Query 011542
Match_columns 483
No_of_seqs 319 out of 2553
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 02:31:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011542.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011542hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4693 Uncharacterized conser 100.0 2.5E-48 5.5E-53 346.8 25.5 351 1-380 1-366 (392)
2 PLN02193 nitrile-specifier pro 100.0 3.9E-44 8.4E-49 369.8 37.6 304 2-324 151-467 (470)
3 PLN02153 epithiospecifier prot 100.0 1.2E-43 2.6E-48 353.3 36.1 313 2-324 7-338 (341)
4 KOG4441 Proteins containing BT 100.0 1.4E-42 3E-47 362.6 29.2 282 16-338 272-555 (571)
5 PLN02193 nitrile-specifier pro 100.0 1.4E-39 3.1E-44 335.9 36.2 291 20-338 111-419 (470)
6 PHA02713 hypothetical protein; 100.0 1.1E-39 2.3E-44 342.3 30.5 270 32-337 259-541 (557)
7 KOG4441 Proteins containing BT 100.0 2.9E-39 6.3E-44 337.6 27.1 254 3-299 312-567 (571)
8 PLN02153 epithiospecifier prot 100.0 1.1E-37 2.4E-42 310.4 32.2 274 53-337 4-292 (341)
9 KOG0379 Kelch repeat-containin 100.0 8.2E-38 1.8E-42 321.9 31.7 279 12-309 53-340 (482)
10 KOG4152 Host cell transcriptio 100.0 7.3E-39 1.6E-43 308.3 21.4 343 1-373 16-400 (830)
11 TIGR03547 muta_rot_YjhT mutatr 100.0 2.9E-37 6.3E-42 308.3 32.1 278 15-323 3-344 (346)
12 PHA02713 hypothetical protein; 100.0 4.2E-38 9.2E-43 330.3 26.5 241 3-285 283-543 (557)
13 TIGR03548 mutarot_permut cycli 100.0 6.3E-37 1.4E-41 302.8 28.4 268 18-312 2-314 (323)
14 PRK14131 N-acetylneuraminic ac 100.0 1.4E-36 3E-41 306.0 31.1 282 15-325 24-368 (376)
15 KOG4693 Uncharacterized conser 100.0 3.4E-36 7.4E-41 269.1 19.7 241 2-255 54-313 (392)
16 PHA03098 kelch-like protein; P 100.0 5.4E-35 1.2E-39 308.7 28.0 268 32-338 252-520 (534)
17 PHA03098 kelch-like protein; P 100.0 1.7E-34 3.6E-39 304.9 28.2 235 20-285 285-521 (534)
18 KOG0379 Kelch repeat-containin 100.0 2.1E-34 4.5E-39 296.7 27.6 252 72-340 56-312 (482)
19 PHA02790 Kelch-like protein; P 100.0 4.1E-33 8.9E-38 288.6 27.3 214 23-283 264-478 (480)
20 TIGR03548 mutarot_permut cycli 100.0 1E-32 2.2E-37 272.8 24.9 234 2-257 51-316 (323)
21 KOG1230 Protein containing rep 100.0 3E-33 6.5E-38 264.1 19.6 254 15-283 62-348 (521)
22 PHA02790 Kelch-like protein; P 100.0 4.5E-32 9.7E-37 280.9 26.1 211 82-336 267-477 (480)
23 PRK14131 N-acetylneuraminic ac 100.0 1.3E-31 2.9E-36 269.8 27.8 248 3-281 63-374 (376)
24 TIGR03547 muta_rot_YjhT mutatr 100.0 1.2E-31 2.7E-36 267.8 26.9 240 3-273 42-344 (346)
25 KOG1230 Protein containing rep 100.0 1.2E-30 2.5E-35 246.6 19.8 257 71-336 61-347 (521)
26 KOG2437 Muskelin [Signal trans 100.0 2.3E-32 5E-37 263.2 4.0 373 2-406 239-675 (723)
27 KOG4152 Host cell transcriptio 100.0 2.4E-29 5.3E-34 242.8 16.7 242 55-311 16-274 (830)
28 COG3055 Uncharacterized protei 99.8 3.4E-17 7.4E-22 153.9 20.8 277 15-321 32-370 (381)
29 COG3055 Uncharacterized protei 99.7 5.8E-16 1.3E-20 145.7 20.1 241 3-276 71-375 (381)
30 KOG2437 Muskelin [Signal trans 99.6 1.6E-15 3.4E-20 147.5 5.6 203 110-317 237-463 (723)
31 PF13964 Kelch_6: Kelch motif 99.2 3.2E-11 6.9E-16 84.1 6.1 49 76-127 1-50 (50)
32 PF13964 Kelch_6: Kelch motif 99.1 2.1E-10 4.5E-15 79.9 6.4 49 126-178 1-50 (50)
33 PLN02772 guanylate kinase 99.0 2.5E-09 5.5E-14 105.1 11.8 89 73-163 21-110 (398)
34 PF01344 Kelch_1: Kelch motif; 98.9 2E-09 4.3E-14 73.9 5.6 44 76-119 1-45 (47)
35 PF13415 Kelch_3: Galactose ox 98.9 2.1E-09 4.6E-14 74.4 5.7 47 86-135 1-49 (49)
36 PF13418 Kelch_4: Galactose ox 98.9 1.8E-09 3.9E-14 74.8 4.6 44 19-62 1-45 (49)
37 PF07646 Kelch_2: Kelch motif; 98.9 3.9E-09 8.4E-14 73.1 6.2 44 76-119 1-47 (49)
38 PF13415 Kelch_3: Galactose ox 98.9 3.3E-09 7.1E-14 73.5 5.7 46 138-186 2-49 (49)
39 PF13418 Kelch_4: Galactose ox 98.9 2.7E-09 5.9E-14 73.9 4.6 44 76-119 1-46 (49)
40 PLN02772 guanylate kinase 98.8 3.3E-08 7.2E-13 97.4 10.5 83 123-209 21-105 (398)
41 PF01344 Kelch_1: Kelch motif; 98.8 8.4E-09 1.8E-13 70.8 4.4 46 126-175 1-47 (47)
42 PF13854 Kelch_5: Kelch motif 98.7 3.6E-08 7.8E-13 65.7 5.3 40 73-112 1-42 (42)
43 PF07646 Kelch_2: Kelch motif; 98.7 5.4E-08 1.2E-12 67.3 6.0 43 126-169 1-46 (49)
44 smart00612 Kelch Kelch domain. 98.6 5.6E-08 1.2E-12 66.4 4.9 47 139-188 1-47 (47)
45 PF13854 Kelch_5: Kelch motif 98.6 1.5E-07 3.3E-12 62.6 5.4 39 16-55 1-41 (42)
46 PF07250 Glyoxal_oxid_N: Glyox 98.5 1E-05 2.2E-10 75.4 18.3 156 104-294 48-215 (243)
47 smart00612 Kelch Kelch domain. 98.5 1.6E-07 3.4E-12 64.1 4.6 46 88-136 1-46 (47)
48 PF07250 Glyoxal_oxid_N: Glyox 98.3 2.5E-05 5.5E-10 72.7 16.2 146 48-226 48-206 (243)
49 PF03089 RAG2: Recombination a 98.3 2.8E-05 6E-10 72.0 14.5 166 139-313 40-231 (337)
50 TIGR01640 F_box_assoc_1 F-box 98.3 0.00035 7.6E-09 65.5 22.6 204 46-277 14-230 (230)
51 PF03089 RAG2: Recombination a 98.2 4.1E-05 9E-10 70.8 13.9 131 9-149 77-231 (337)
52 TIGR01640 F_box_assoc_1 F-box 98.1 0.00078 1.7E-08 63.1 20.6 187 102-309 14-215 (230)
53 PRK11138 outer membrane biogen 97.1 0.31 6.7E-06 49.6 25.3 222 27-309 66-302 (394)
54 PRK11138 outer membrane biogen 97.1 0.18 3.8E-06 51.4 23.1 193 47-307 171-382 (394)
55 PF07893 DUF1668: Protein of u 97.0 0.037 8.1E-07 55.0 17.0 119 28-169 74-215 (342)
56 PF12768 Rax2: Cortical protei 96.5 0.034 7.3E-07 53.4 11.9 112 44-169 14-129 (281)
57 TIGR03300 assembly_YfgL outer 96.2 1.6 3.4E-05 44.0 23.5 168 83-307 142-326 (377)
58 PRK13684 Ycf48-like protein; P 96.2 1.5 3.3E-05 43.5 24.2 176 86-309 142-321 (334)
59 KOG2055 WD40 repeat protein [G 96.1 0.25 5.3E-06 49.3 15.1 152 86-278 224-377 (514)
60 PF13360 PQQ_2: PQQ-like domai 96.0 1.3 2.8E-05 41.0 24.6 185 26-278 32-233 (238)
61 TIGR03300 assembly_YfgL outer 95.8 2.5 5.4E-05 42.5 24.2 197 46-308 155-368 (377)
62 PRK13684 Ycf48-like protein; P 95.5 2.3 5E-05 42.2 20.1 182 25-254 137-323 (334)
63 PF12768 Rax2: Cortical protei 95.5 0.16 3.5E-06 48.7 11.3 113 100-227 14-130 (281)
64 KOG2055 WD40 repeat protein [G 95.2 1.1 2.5E-05 44.8 15.9 144 28-196 222-365 (514)
65 PF07893 DUF1668: Protein of u 95.1 0.81 1.8E-05 45.5 15.3 117 85-226 75-215 (342)
66 cd00094 HX Hemopexin-like repe 94.8 1.6 3.4E-05 39.6 15.1 152 81-278 11-178 (194)
67 TIGR02800 propeller_TolB tol-p 94.4 6.5 0.00014 40.0 22.8 161 86-284 200-363 (417)
68 PRK04792 tolB translocation pr 94.3 7.4 0.00016 40.3 21.1 146 46-226 242-390 (448)
69 TIGR02800 propeller_TolB tol-p 93.9 8.2 0.00018 39.3 21.1 146 46-226 214-362 (417)
70 PF05096 Glu_cyclase_2: Glutam 93.8 1.6 3.4E-05 41.3 13.0 107 136-278 54-160 (264)
71 PRK04922 tolB translocation pr 93.7 9.4 0.0002 39.3 21.4 183 46-278 228-414 (433)
72 cd00094 HX Hemopexin-like repe 93.6 5.2 0.00011 36.2 15.9 141 25-195 12-166 (194)
73 PRK05137 tolB translocation pr 93.3 11 0.00024 38.8 25.2 146 102-283 226-374 (435)
74 PF08450 SGL: SMP-30/Gluconola 93.3 7.1 0.00015 36.6 19.0 164 29-226 50-221 (246)
75 PF02897 Peptidase_S9_N: Proly 93.1 7.3 0.00016 39.7 18.1 207 29-275 133-357 (414)
76 PF09910 DUF2139: Uncharacteri 93.0 7.4 0.00016 37.2 15.8 160 17-193 30-219 (339)
77 PRK04792 tolB translocation pr 92.9 13 0.00029 38.5 24.1 147 102-284 242-391 (448)
78 PRK05137 tolB translocation pr 92.9 13 0.00028 38.3 23.0 118 29-169 211-330 (435)
79 PRK00178 tolB translocation pr 92.7 13 0.00029 38.1 23.8 146 102-284 223-372 (430)
80 PF12217 End_beta_propel: Cata 92.4 9.5 0.00021 35.7 18.4 268 31-312 26-335 (367)
81 PRK00178 tolB translocation pr 92.4 14 0.00031 37.8 22.0 145 46-226 223-371 (430)
82 PF05096 Glu_cyclase_2: Glutam 92.1 4.6 0.0001 38.2 13.4 157 29-225 54-210 (264)
83 PF08268 FBA_3: F-box associat 91.9 2.9 6.2E-05 35.0 11.0 85 137-227 5-89 (129)
84 PRK03629 tolB translocation pr 91.1 20 0.00044 36.8 24.2 169 102-312 223-395 (429)
85 PF14870 PSII_BNR: Photosynthe 90.6 18 0.00038 35.3 23.0 241 3-311 7-253 (302)
86 PF14870 PSII_BNR: Photosynthe 90.6 18 0.00038 35.3 17.3 200 3-253 92-295 (302)
87 cd00200 WD40 WD40 domain, foun 90.5 14 0.0003 33.9 24.0 108 28-164 60-168 (289)
88 PF13360 PQQ_2: PQQ-like domai 90.4 14 0.00031 33.9 26.9 195 47-308 4-219 (238)
89 cd00200 WD40 WD40 domain, foun 90.0 15 0.00033 33.7 23.3 111 28-166 18-128 (289)
90 PF02191 OLF: Olfactomedin-lik 89.9 18 0.00039 34.2 15.3 157 73-251 65-237 (250)
91 PRK04043 tolB translocation pr 89.7 26 0.00057 35.9 19.7 152 102-285 213-367 (419)
92 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.6 31 0.00067 36.6 24.1 126 28-169 67-199 (527)
93 PRK04922 tolB translocation pr 89.6 27 0.00059 35.9 22.8 147 102-284 228-377 (433)
94 PF08450 SGL: SMP-30/Gluconola 89.5 18 0.0004 33.7 21.9 200 30-284 11-222 (246)
95 PF03178 CPSF_A: CPSF A subuni 89.5 11 0.00024 37.0 14.4 139 138-310 42-192 (321)
96 PF02897 Peptidase_S9_N: Proly 89.2 20 0.00043 36.5 16.5 192 86-310 134-345 (414)
97 KOG0310 Conserved WD40 repeat- 89.2 28 0.0006 35.5 17.1 114 23-163 72-186 (487)
98 TIGR03866 PQQ_ABC_repeats PQQ- 86.4 30 0.00064 32.7 24.4 102 32-164 2-106 (300)
99 PRK11028 6-phosphogluconolacto 86.4 35 0.00075 33.4 24.1 114 24-163 39-158 (330)
100 PF10282 Lactonase: Lactonase, 86.2 23 0.00049 35.2 14.4 171 20-226 144-332 (345)
101 PRK03629 tolB translocation pr 85.6 47 0.001 34.2 22.1 189 46-282 223-413 (429)
102 PRK02889 tolB translocation pr 85.1 48 0.001 34.0 22.1 147 102-284 220-369 (427)
103 PLN00033 photosystem II stabil 84.6 49 0.0011 33.6 26.6 135 3-168 76-214 (398)
104 PF14583 Pectate_lyase22: Olig 84.6 19 0.00041 36.1 12.5 244 23-311 39-303 (386)
105 PF08268 FBA_3: F-box associat 83.6 17 0.00037 30.3 10.4 85 83-169 2-88 (129)
106 PRK11028 6-phosphogluconolacto 80.3 61 0.0013 31.7 23.9 104 32-162 3-111 (330)
107 PLN00033 photosystem II stabil 79.4 76 0.0017 32.3 25.5 218 30-309 146-389 (398)
108 PLN00181 protein SPA1-RELATED; 77.9 1.2E+02 0.0027 33.9 22.6 64 87-164 545-609 (793)
109 PF03178 CPSF_A: CPSF A subuni 76.8 77 0.0017 30.9 14.9 137 87-252 42-190 (321)
110 PRK02889 tolB translocation pr 74.8 1.1E+02 0.0023 31.5 21.4 160 29-226 205-368 (427)
111 PRK04043 tolB translocation pr 74.3 1.1E+02 0.0024 31.4 22.4 151 46-227 213-366 (419)
112 PRK01742 tolB translocation pr 74.0 1.1E+02 0.0024 31.3 22.1 60 102-169 228-288 (429)
113 TIGR03866 PQQ_ABC_repeats PQQ- 72.9 84 0.0018 29.5 24.5 112 25-165 36-149 (300)
114 PTZ00421 coronin; Provisional 70.0 1.5E+02 0.0032 31.2 20.8 64 87-164 138-201 (493)
115 PF10282 Lactonase: Lactonase, 68.8 1.3E+02 0.0027 29.9 22.1 193 48-283 17-232 (345)
116 COG1520 FOG: WD40-like repeat 68.7 1.3E+02 0.0028 30.0 21.3 133 27-193 65-203 (370)
117 COG4946 Uncharacterized protei 67.3 1.6E+02 0.0034 30.4 17.2 188 99-331 104-301 (668)
118 PF02239 Cytochrom_D1: Cytochr 66.6 1.2E+02 0.0026 30.5 12.9 249 22-307 80-333 (369)
119 COG4257 Vgb Streptogramin lyas 65.1 1.3E+02 0.0029 28.8 17.1 84 103-197 84-168 (353)
120 PF13088 BNR_2: BNR repeat-lik 65.1 1.2E+02 0.0027 28.4 14.2 156 26-192 114-275 (275)
121 TIGR03075 PQQ_enz_alc_DH PQQ-d 63.2 1.3E+02 0.0029 31.9 13.1 117 137-281 69-197 (527)
122 cd00216 PQQ_DH Dehydrogenases 59.2 2.3E+02 0.005 29.6 23.0 123 28-169 59-193 (488)
123 PRK10115 protease 2; Provision 58.7 2.9E+02 0.0062 30.5 22.1 218 23-285 175-404 (686)
124 COG4257 Vgb Streptogramin lyas 55.1 2E+02 0.0044 27.6 18.2 182 47-284 125-314 (353)
125 PRK10115 protease 2; Provision 54.9 3.3E+02 0.0071 30.0 22.1 213 29-283 136-354 (686)
126 KOG0310 Conserved WD40 repeat- 51.5 2.9E+02 0.0063 28.4 14.0 131 29-198 164-301 (487)
127 cd00216 PQQ_DH Dehydrogenases 51.4 3.1E+02 0.0067 28.7 27.4 74 31-117 111-192 (488)
128 KOG0291 WD40-repeat-containing 51.3 3.2E+02 0.0069 30.0 12.9 112 27-167 358-472 (893)
129 PF12217 End_beta_propel: Cata 51.1 2.2E+02 0.0048 27.0 17.6 223 24-254 79-334 (367)
130 PF02239 Cytochrom_D1: Cytochr 50.4 2.8E+02 0.006 27.9 14.2 95 46-167 16-114 (369)
131 PLN00181 protein SPA1-RELATED; 49.7 4.2E+02 0.009 29.7 23.2 61 86-163 587-650 (793)
132 PRK01742 tolB translocation pr 49.4 3.1E+02 0.0067 28.1 20.9 117 29-168 213-331 (429)
133 PF13540 RCC1_2: Regulator of 48.7 24 0.00053 21.0 2.8 18 21-38 8-25 (30)
134 KOG1036 Mitotic spindle checkp 48.5 2.6E+02 0.0057 27.1 13.5 90 47-163 76-165 (323)
135 KOG2321 WD40 repeat protein [G 48.4 3.6E+02 0.0078 28.6 13.8 62 125-197 132-196 (703)
136 PF09910 DUF2139: Uncharacteri 48.4 2.7E+02 0.0058 27.1 18.3 102 101-222 77-185 (339)
137 KOG0281 Beta-TrCP (transducin 47.4 84 0.0018 30.9 7.4 77 232-328 357-433 (499)
138 KOG2150 CCR4-NOT transcription 47.3 23 0.00049 37.0 4.0 36 418-456 51-87 (575)
139 KOG0296 Angio-associated migra 46.7 3.1E+02 0.0067 27.3 14.0 110 29-168 74-185 (399)
140 PF02191 OLF: Olfactomedin-lik 45.3 2.7E+02 0.0059 26.3 17.7 138 44-194 87-237 (250)
141 KOG0646 WD40 repeat protein [G 44.0 3.8E+02 0.0081 27.5 15.1 213 23-278 85-310 (476)
142 KOG4649 PQQ (pyrrolo-quinoline 42.5 3.1E+02 0.0067 26.1 13.7 109 23-164 14-126 (354)
143 KOG0289 mRNA splicing factor [ 39.2 4.4E+02 0.0095 26.9 14.4 120 22-169 350-470 (506)
144 KOG2321 WD40 repeat protein [G 38.2 3E+02 0.0065 29.2 10.1 126 18-168 132-265 (703)
145 KOG2048 WD40 repeat protein [G 38.1 5.5E+02 0.012 27.7 17.9 121 132-284 388-514 (691)
146 PF13088 BNR_2: BNR repeat-lik 37.9 3.4E+02 0.0075 25.3 17.8 218 18-249 45-275 (275)
147 KOG0316 Conserved WD40 repeat- 37.5 3.5E+02 0.0076 25.4 13.7 94 46-164 81-176 (307)
148 PF08662 eIF2A: Eukaryotic tra 37.4 2.9E+02 0.0064 24.7 9.4 31 243-284 110-140 (194)
149 smart00284 OLF Olfactomedin-li 33.9 4.2E+02 0.009 25.1 15.7 157 73-250 70-241 (255)
150 PTZ00421 coronin; Provisional 33.8 5.8E+02 0.013 26.8 18.4 63 32-113 139-201 (493)
151 COG3823 Glutamine cyclotransfe 33.4 3.9E+02 0.0084 24.6 11.4 58 133-196 51-109 (262)
152 KOG0649 WD40 repeat protein [G 32.2 4.4E+02 0.0095 24.9 15.1 148 15-194 111-263 (325)
153 COG4880 Secreted protein conta 30.7 6.1E+02 0.013 26.0 12.4 92 42-148 402-493 (603)
154 KOG4649 PQQ (pyrrolo-quinoline 30.4 4.9E+02 0.011 24.9 9.7 80 2-113 45-126 (354)
155 PTZ00420 coronin; Provisional 28.7 7.6E+02 0.016 26.5 20.5 61 88-164 139-200 (568)
156 COG0823 TolB Periplasmic compo 28.4 6.7E+02 0.014 25.8 11.8 106 45-170 261-368 (425)
157 PF07734 FBA_1: F-box associat 28.2 3.9E+02 0.0084 23.0 9.6 82 83-169 2-91 (164)
158 KOG0649 WD40 repeat protein [G 27.3 5.3E+02 0.012 24.3 13.8 65 112-186 99-165 (325)
159 PF09826 Beta_propel: Beta pro 27.1 7.7E+02 0.017 26.1 20.3 173 139-328 173-358 (521)
160 COG1520 FOG: WD40-like repeat 25.6 6.7E+02 0.015 24.9 22.4 109 30-167 111-225 (370)
161 PLN02919 haloacid dehalogenase 24.7 1.2E+03 0.025 27.4 26.1 217 23-278 627-891 (1057)
162 PF13570 PQQ_3: PQQ-like domai 24.0 1.9E+02 0.0042 18.1 4.4 23 27-55 18-40 (40)
163 KOG0308 Conserved WD40 repeat- 23.6 3.1E+02 0.0066 29.5 7.5 76 28-113 127-204 (735)
164 PF05567 Neisseria_PilC: Neiss 23.4 6.5E+02 0.014 24.9 9.7 22 31-54 95-116 (335)
165 KOG0316 Conserved WD40 repeat- 23.2 4.4E+02 0.0095 24.7 7.6 46 267-315 123-168 (307)
166 TIGR02658 TTQ_MADH_Hv methylam 23.1 7.6E+02 0.017 24.6 15.3 148 86-252 12-167 (352)
167 KOG1332 Vesicle coat complex C 22.2 6.8E+02 0.015 23.7 9.7 126 16-169 162-295 (299)
168 KOG0281 Beta-TrCP (transducin 21.7 4.6E+02 0.0099 26.0 7.8 40 268-312 341-380 (499)
169 COG1343 CRISPR-associated prot 21.1 2.8E+02 0.006 21.6 5.1 57 417-481 15-71 (89)
170 PLN03215 ascorbic acid mannose 20.3 9E+02 0.019 24.4 15.1 40 82-121 252-305 (373)
No 1
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=2.5e-48 Score=346.81 Aligned_cols=351 Identities=23% Similarity=0.363 Sum_probs=291.8
Q ss_pred CcceEEceeCCCCCCCCCCCcceeEEEECCcEEEEEcccCCCc-----cccceEEEEcCCCcEEeeeec--CCC--CCCC
Q 011542 1 MHYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKR-----FLSDVVVYDIDNKLWFQPECT--GNG--SNGQ 71 (483)
Q Consensus 1 ~~~W~~~~~~~~~g~~p~~R~~h~~~~~~~~~l~v~GG~~~~~-----~~~~~~~yd~~~~~W~~~~~~--~~~--~~~~ 71 (483)
|+.|+--.. + -..|.+|+++.++ .+||.|||+..+. .--|+++++..+.+|+++++. ... ..-+
T Consensus 1 m~~WTVHLe---G---GPrRVNHAavaVG-~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp 73 (392)
T KOG4693|consen 1 MATWTVHLE---G---GPRRVNHAAVAVG-SRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYP 73 (392)
T ss_pred CceEEEEec---C---Ccccccceeeeec-ceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCC
Confidence 788887652 2 2579999999999 5999999986432 234899999999999999872 211 1123
Q ss_pred CCCCCcceeEEEEECCEEEEEccccC-CCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCC-
Q 011542 72 VGPGPRAFHIAVAIDCHMFIFGGRFG-SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK- 149 (483)
Q Consensus 72 ~~p~~R~~h~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~- 149 (483)
..|-.|++|+.+.+.+++|++||+++ ....|-+++||+++++|++....|.+|.+|.+|++|++++ .+|||||+...
T Consensus 74 ~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn-~MyiFGGye~~a 152 (392)
T KOG4693|consen 74 AVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGN-QMYIFGGYEEDA 152 (392)
T ss_pred ccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECc-EEEEecChHHHH
Confidence 45678999999999999999999987 5567889999999999999888889999999999999988 99999998654
Q ss_pred -cCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCC-c--ccceecccccccccCCCCCeEEe
Q 011542 150 -KWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGP-I--MGDLWALKGLIEEENETPGWTQL 225 (483)
Q Consensus 150 -~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~-~--~~d~~~l~~~~~yd~~~~~W~~~ 225 (483)
.+.++++.+|..|.+|+.+.+.|.+|.-|..|+++++++++|||||+..... + .++.+ .+.+..+|..+..|...
T Consensus 153 ~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Y-c~~i~~ld~~T~aW~r~ 231 (392)
T KOG4693|consen 153 QRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQY-CDTIMALDLATGAWTRT 231 (392)
T ss_pred HhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhh-cceeEEEeccccccccC
Confidence 6789999999999999999999999999999999999999999999876432 2 12333 36777889999999999
Q ss_pred ccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEE
Q 011542 226 KLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYL 305 (483)
Q Consensus 226 ~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~ 305 (483)
...+..|..|..|++.++++++|+|||++..- ..-.+++|.|||.+..|..|...+..|++|..+++++.++++|
T Consensus 232 p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~l-----n~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~ 306 (392)
T KOG4693|consen 232 PENTMKPGGRRSHSTFVYNGKMYMFGGYNGTL-----NVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVY 306 (392)
T ss_pred CCCCcCCCcccccceEEEcceEEEecccchhh-----hhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEE
Confidence 87788999999999999999999999987632 4567999999999999999999888899999999999999999
Q ss_pred EEccCCCCCccCcEEEEcCCCCcccceeecCCCCCCCCCCcccccccccceecccccccchhHhhhhhhcCceee
Q 011542 306 LFGGFDGKSTFGDIWWLVPEEDPIAKRYTESPPKVLPENKDVGMENYNSQFAVKESQRESSAIVELQKKLDISVS 380 (483)
Q Consensus 306 v~GG~~~~~~~~d~w~l~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~ 380 (483)
+|||........ -.| ++--..+++..+.+.+.+++ |+|.|++++++.+.+|+.+++++.+
T Consensus 307 LFGGTsP~~~~~--------~Sp-t~~~G~~~~~~LiD~SDLHv------LDF~PsLKTLa~~~Vl~~~ldqs~L 366 (392)
T KOG4693|consen 307 LFGGTSPLPCHP--------LSP-TNYNGMISPSGLIDLSDLHV------LDFAPSLKTLAMQSVLMFELDQSEL 366 (392)
T ss_pred EecCCCCCCCCC--------CCc-cccCCCCCccccccccccee------eecChhHHHHHHHHHHHHhhhhhhc
Confidence 999976532111 001 11122445556777888887 9999999999999999999998766
No 2
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=3.9e-44 Score=369.82 Aligned_cols=304 Identities=24% Similarity=0.428 Sum_probs=250.1
Q ss_pred cceEEceeCCCCCCCCCCCcceeEEEECCcEEEEEcccCC-C-ccccceEEEEcCCCcEEeeeecCCCCCCCCCCC-Ccc
Q 011542 2 HYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVD-K-RFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPG-PRA 78 (483)
Q Consensus 2 ~~W~~~~~~~~~g~~p~~R~~h~~~~~~~~~l~v~GG~~~-~-~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~-~R~ 78 (483)
-+|.++.+ .+.+|.||.+|++++++ ++|||+||... . ...+++|+||+.+++|..++..+ +.|. +|.
T Consensus 151 ~~W~~~~~---~~~~P~pR~~h~~~~~~-~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g------~~P~~~~~ 220 (470)
T PLN02193 151 GKWIKVEQ---KGEGPGLRCSHGIAQVG-NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATG------DVPHLSCL 220 (470)
T ss_pred ceEEEccc---CCCCCCCccccEEEEEC-CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCC------CCCCCccc
Confidence 37998875 33679999999999998 58999999753 2 34578999999999999876432 1333 467
Q ss_pred eeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEE
Q 011542 79 FHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVL 158 (483)
Q Consensus 79 ~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y 158 (483)
+|++++++++||+|||......++++|+||+.+++|+++++.+..|.+|..|+++++++ +||||||.+....++++++|
T Consensus 221 ~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~-~iYv~GG~~~~~~~~~~~~y 299 (470)
T PLN02193 221 GVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEE-NVYVFGGVSATARLKTLDSY 299 (470)
T ss_pred ceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECC-EEEEECCCCCCCCcceEEEE
Confidence 89999999999999999877778999999999999999987555589999999988865 99999999887788999999
Q ss_pred ECCCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeee
Q 011542 159 DTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGH 238 (483)
Q Consensus 159 d~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~ 238 (483)
|+.+++|+.++..+.+|.+|.+|+++++++++||+||..+. .++.+++||+.+++|+.+...+..|.+|..|
T Consensus 300 d~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~--------~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~ 371 (470)
T PLN02193 300 NIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC--------EVDDVHYYDPVQDKWTQVETFGVRPSERSVF 371 (470)
T ss_pred ECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC--------ccCceEEEECCCCEEEEeccCCCCCCCccee
Confidence 99999999998766788999999999999999999997543 1477888899999999998777789999999
Q ss_pred EEEEeCCEEEEEcCCCCCCC--CcccceeeCcEEEEEcCCCceEEccCCC---CCCCCCcceEEE--EE-C-CEEEEEcc
Q 011542 239 TITSGGHYLLLFGGHGTGGW--LSRYDIYYNDTIILDRLSAQWKRLPIGN---EPPPARAYHSMT--CL-G-SLYLLFGG 309 (483)
Q Consensus 239 ~~~~~~~~i~v~GG~~~~~~--~~~~~~~~~~v~~yd~~~~~W~~v~~~~---~~p~~R~~~~~~--~~-~-~~i~v~GG 309 (483)
++++.+++||||||...... ......+.+++|+||+.+++|+.+...+ .+|.+|..|+++ .+ + +.++||||
T Consensus 372 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG 451 (470)
T PLN02193 372 ASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGG 451 (470)
T ss_pred EEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcC
Confidence 99999999999999864211 0111246789999999999999998654 357788777543 23 3 45999999
Q ss_pred CCC-CCccCcEEEEcC
Q 011542 310 FDG-KSTFGDIWWLVP 324 (483)
Q Consensus 310 ~~~-~~~~~d~w~l~~ 324 (483)
.+. +..++|+|.|..
T Consensus 452 ~~~~~~~~~D~~~~~~ 467 (470)
T PLN02193 452 KAPTNDRFDDLFFYGI 467 (470)
T ss_pred CCCccccccceEEEec
Confidence 975 467999998854
No 3
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.2e-43 Score=353.30 Aligned_cols=313 Identities=23% Similarity=0.384 Sum_probs=242.1
Q ss_pred cceEEceeCCCCCCCCCCCcceeEEEECCcEEEEEcccCC--CccccceEEEEcCCCcEEeeeecCCCCCCCCCCC-Ccc
Q 011542 2 HYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVD--KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPG-PRA 78 (483)
Q Consensus 2 ~~W~~~~~~~~~g~~p~~R~~h~~~~~~~~~l~v~GG~~~--~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~-~R~ 78 (483)
-.|.++.+. .|.+|.||.+|++++++ ++|||+||... ....+++++||+.+++|..+++.+. .|. .+.
T Consensus 7 ~~W~~~~~~--~~~~P~pR~~h~~~~~~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~------~p~~~~~ 77 (341)
T PLN02153 7 GGWIKVEQK--GGKGPGPRCSHGIAVVG-DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGD------VPRISCL 77 (341)
T ss_pred CeEEEecCC--CCCCCCCCCcceEEEEC-CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCC------CCCCccC
Confidence 479999753 24589999999999997 58999999853 3346899999999999998864421 222 345
Q ss_pred eeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecC--CCCCCCCcccEEEEECCcEEEEEecCCCC------c
Q 011542 79 FHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSF--GDLPSPRDFAAASAIGNRKIVMYGGWDGK------K 150 (483)
Q Consensus 79 ~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~--~~~p~~r~~~~~~~~~~~~iyv~GG~~~~------~ 150 (483)
+|++++++++||+|||+.....++++++||+.+++|+.+++. ...|.+|..|+++++++ +||||||.+.. .
T Consensus 78 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~-~iyv~GG~~~~~~~~~~~ 156 (341)
T PLN02153 78 GVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDEN-HVYVFGGVSKGGLMKTPE 156 (341)
T ss_pred ceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECC-EEEEECCccCCCccCCCc
Confidence 789999999999999998777788999999999999998752 12388999999988865 99999998643 2
Q ss_pred CCccEEEEECCCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCc-ccceecccccccccCCCCCeEEeccCC
Q 011542 151 WLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPI-MGDLWALKGLIEEENETPGWTQLKLPG 229 (483)
Q Consensus 151 ~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~-~~d~~~l~~~~~yd~~~~~W~~~~~~g 229 (483)
.++++++||+.+++|+.++..+..|.+|.+|+++.++++|||+||....... -.+...++.+++||+.+++|+.+...+
T Consensus 157 ~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g 236 (341)
T PLN02153 157 RFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTG 236 (341)
T ss_pred ccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccC
Confidence 4578999999999999998655567899999999999999999997532000 000112577889999999999998777
Q ss_pred CCCCCCeeeEEEEeCCEEEEEcCCCCCC--CCcccceeeCcEEEEEcCCCceEEccCCCCCCCCC--cceEEEE-E-CCE
Q 011542 230 QAPSSRCGHTITSGGHYLLLFGGHGTGG--WLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPAR--AYHSMTC-L-GSL 303 (483)
Q Consensus 230 ~~p~~r~~~~~~~~~~~i~v~GG~~~~~--~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R--~~~~~~~-~-~~~ 303 (483)
.+|.+|..|++++.+++||||||..... .........+++|+||+.+++|+.+.....+|.|| ..++++. . +++
T Consensus 237 ~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~ 316 (341)
T PLN02153 237 AKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNG 316 (341)
T ss_pred CCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcce
Confidence 7899999999999999999999974211 00011245789999999999999997654444444 3334443 3 458
Q ss_pred EEEEccCCCC-CccCcEEEEcC
Q 011542 304 YLLFGGFDGK-STFGDIWWLVP 324 (483)
Q Consensus 304 i~v~GG~~~~-~~~~d~w~l~~ 324 (483)
|||+||.++. ..++|+|.+..
T Consensus 317 ~~~~gG~~~~~~~~~~~~~~~~ 338 (341)
T PLN02153 317 LLMHGGKLPTNERTDDLYFYAV 338 (341)
T ss_pred EEEEcCcCCCCccccceEEEec
Confidence 9999999764 57899997753
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.4e-42 Score=362.58 Aligned_cols=282 Identities=24% Similarity=0.400 Sum_probs=252.8
Q ss_pred CCCCCcceeEEEECCcEEEEEcccCC-CccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEcc
Q 011542 16 VPQPRSGHSAVNIGKSKVVVFGGLVD-KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGG 94 (483)
Q Consensus 16 ~p~~R~~h~~~~~~~~~l~v~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG 94 (483)
++.+|..... ...+.||++||+.+ ....+.+..||+.+++|..++ ++|.+|..+++++++|+||++||
T Consensus 272 ~~~~~t~~r~--~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a---------~m~~~r~~~~~~~~~~~lYv~GG 340 (571)
T KOG4441|consen 272 MQSPRTRPRR--SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLA---------PMPSPRCRVGVAVLNGKLYVVGG 340 (571)
T ss_pred ccCCCcccCc--CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecC---------CCCcccccccEEEECCEEEEEcc
Confidence 3444444443 22368999999986 678889999999999999987 57899999999999999999999
Q ss_pred cc-CCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCC
Q 011542 95 RF-GSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGS 173 (483)
Q Consensus 95 ~~-~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~ 173 (483)
++ +...++++|+||+.+++|.++++ |+.+|..++++++++ .||++||+++...++++++||+.+++|+.++ +
T Consensus 341 ~~~~~~~l~~ve~YD~~~~~W~~~a~---M~~~R~~~~v~~l~g-~iYavGG~dg~~~l~svE~YDp~~~~W~~va---~ 413 (571)
T KOG4441|consen 341 YDSGSDRLSSVERYDPRTNQWTPVAP---MNTKRSDFGVAVLDG-KLYAVGGFDGEKSLNSVECYDPVTNKWTPVA---P 413 (571)
T ss_pred ccCCCcccceEEEecCCCCceeccCC---ccCccccceeEEECC-EEEEEeccccccccccEEEecCCCCcccccC---C
Confidence 99 67889999999999999999986 999999999999966 9999999999999999999999999999998 9
Q ss_pred CCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCC
Q 011542 174 VPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGH 253 (483)
Q Consensus 174 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~ 253 (483)
|+.+|++|+++.++++||++||...... .++.+++|||.+++|+.++ +++.+|.++++++.+++||++||+
T Consensus 414 m~~~r~~~gv~~~~g~iYi~GG~~~~~~------~l~sve~YDP~t~~W~~~~---~M~~~R~~~g~a~~~~~iYvvGG~ 484 (571)
T KOG4441|consen 414 MLTRRSGHGVAVLGGKLYIIGGGDGSSN------CLNSVECYDPETNTWTLIA---PMNTRRSGFGVAVLNGKIYVVGGF 484 (571)
T ss_pred CCcceeeeEEEEECCEEEEEcCcCCCcc------ccceEEEEcCCCCceeecC---CcccccccceEEEECCEEEEECCc
Confidence 9999999999999999999999877653 5799999999999999999 899999999999999999999999
Q ss_pred CCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEccCCCCCccCcEEEEcCCCCccccee
Q 011542 254 GTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDPIAKRY 333 (483)
Q Consensus 254 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~~~~~~d~w~l~~~~d~~~~~w 333 (483)
+.. ....++++||+.+++|+.++.+. .+|..++++++++++|++||+++...++. +.+|||.+++|
T Consensus 485 ~~~-------~~~~~VE~ydp~~~~W~~v~~m~---~~rs~~g~~~~~~~ly~vGG~~~~~~l~~----ve~ydp~~d~W 550 (571)
T KOG4441|consen 485 DGT-------SALSSVERYDPETNQWTMVAPMT---SPRSAVGVVVLGGKLYAVGGFDGNNNLNT----VECYDPETDTW 550 (571)
T ss_pred cCC-------CccceEEEEcCCCCceeEcccCc---cccccccEEEECCEEEEEecccCccccce----eEEcCCCCCce
Confidence 873 24566999999999999998764 48999999999999999999999888877 56789999999
Q ss_pred ecCCC
Q 011542 334 TESPP 338 (483)
Q Consensus 334 ~~~~~ 338 (483)
+..+.
T Consensus 551 ~~~~~ 555 (571)
T KOG4441|consen 551 TEVTE 555 (571)
T ss_pred eeCCC
Confidence 98865
No 5
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.4e-39 Score=335.91 Aligned_cols=291 Identities=23% Similarity=0.359 Sum_probs=236.4
Q ss_pred CcceeEEEECCcEEEEEcccCCCccccceEEE--EcCC----CcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEc
Q 011542 20 RSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVY--DIDN----KLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFG 93 (483)
Q Consensus 20 R~~h~~~~~~~~~l~v~GG~~~~~~~~~~~~y--d~~~----~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~G 93 (483)
..|...++ .+++|+.|+|..+. .++.+-+| ++.+ ++|..+++.+ .+|.+|.+|++++++++||+||
T Consensus 111 ~~g~~f~~-~~~~ivgf~G~~~~-~~~~ig~y~~~~~~~~~~~~W~~~~~~~------~~P~pR~~h~~~~~~~~iyv~G 182 (470)
T PLN02193 111 RPGVKFVL-QGGKIVGFHGRSTD-VLHSLGAYISLPSTPKLLGKWIKVEQKG------EGPGLRCSHGIAQVGNKIYSFG 182 (470)
T ss_pred CCCCEEEE-cCCeEEEEeccCCC-cEEeeEEEEecCCChhhhceEEEcccCC------CCCCCccccEEEEECCEEEEEC
Confidence 44555544 56899999998654 34554444 6645 7999987543 3688999999999999999999
Q ss_pred cccC-C-CCCccEEEEECCCCeEEEeecCCCCCC-CCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEecc
Q 011542 94 GRFG-S-RRLGDFWVLDTDIWQWSELTSFGDLPS-PRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPV 170 (483)
Q Consensus 94 G~~~-~-~~~~~~~~yd~~t~~W~~l~~~~~~p~-~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~ 170 (483)
|... . ...+++|+||+.+++|..+++.+.+|. .|..|+++++++ +||||||.+....++++|+||+.+++|+++++
T Consensus 183 G~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~-~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~ 261 (470)
T PLN02193 183 GEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGS-TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTP 261 (470)
T ss_pred CcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECC-EEEEECCCCCCCCCccEEEEECCCCEEEEcCc
Confidence 9853 2 234689999999999999877655665 366888888866 99999999877788999999999999999985
Q ss_pred CCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEE
Q 011542 171 TGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLF 250 (483)
Q Consensus 171 ~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~ 250 (483)
.+..|.+|+.|+++.++++||||||..... .++.++.||+.+++|+.++.++.+|.+|.+|++++.+++||++
T Consensus 262 ~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-------~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyvi 334 (470)
T PLN02193 262 VEEGPTPRSFHSMAADEENVYVFGGVSATA-------RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVV 334 (470)
T ss_pred CCCCCCCccceEEEEECCEEEEECCCCCCC-------CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEE
Confidence 444589999999999999999999986543 2467788999999999998777788999999999999999999
Q ss_pred cCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEccCCCC---------CccCcEEE
Q 011542 251 GGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGK---------STFGDIWW 321 (483)
Q Consensus 251 GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~~---------~~~~d~w~ 321 (483)
||.+. ...+++++||+.+++|+.++.++..|.+|..|+++.++++||||||.... ...+|+|.
T Consensus 335 GG~~g--------~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 335 YGFNG--------CEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred ECCCC--------CccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEE
Confidence 99753 13589999999999999998876678899999999999999999997531 23568876
Q ss_pred EcCCCCcccceeecCCC
Q 011542 322 LVPEEDPIAKRYTESPP 338 (483)
Q Consensus 322 l~~~~d~~~~~w~~~~~ 338 (483)
|+ +.+++|+.++.
T Consensus 407 ~D----~~t~~W~~~~~ 419 (470)
T PLN02193 407 LD----TETLQWERLDK 419 (470)
T ss_pred EE----cCcCEEEEccc
Confidence 55 45778887753
No 6
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=342.33 Aligned_cols=270 Identities=13% Similarity=0.126 Sum_probs=227.0
Q ss_pred EEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEcccc-CCCCCccEEEEECC
Q 011542 32 KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRF-GSRRLGDFWVLDTD 110 (483)
Q Consensus 32 ~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~ 110 (483)
.+++.||.. ......+++||+.+++|..++ ++|.+|.+|++++++++||++||.. +...++++++||+.
T Consensus 259 ~l~~~~g~~-~~~~~~v~~yd~~~~~W~~l~---------~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~ 328 (557)
T PHA02713 259 CLVCHDTKY-NVCNPCILVYNINTMEYSVIS---------TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIE 328 (557)
T ss_pred EEEEecCcc-ccCCCCEEEEeCCCCeEEECC---------CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECC
Confidence 455555521 123357899999999999987 5688999999999999999999986 34457899999999
Q ss_pred CCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEeCCEE
Q 011542 111 IWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRL 190 (483)
Q Consensus 111 t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~l 190 (483)
+++|.++++ ||.+|..++++++++ +||++||.++....+++++||+.+++|+.++ +||.+|.+++++.++++|
T Consensus 329 ~n~W~~~~~---m~~~R~~~~~~~~~g-~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~I 401 (557)
T PHA02713 329 NKIHVELPP---MIKNRCRFSLAVIDD-TIYAIGGQNGTNVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYI 401 (557)
T ss_pred CCeEeeCCC---CcchhhceeEEEECC-EEEEECCcCCCCCCceEEEEECCCCeEEECC---CCCcccccccEEEECCEE
Confidence 999999985 999999999999966 9999999987777889999999999999998 999999999999999999
Q ss_pred EEEccCCCCCCc-----cc------ceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCC
Q 011542 191 LIYGGRGGGGPI-----MG------DLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWL 259 (483)
Q Consensus 191 yv~GG~~~~~~~-----~~------d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~ 259 (483)
|++||....... .+ +...++.+++|||.+++|+.++ ++|.+|..+++++.+++||++||.+...
T Consensus 402 YviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~~IYv~GG~~~~~-- 476 (557)
T PHA02713 402 YIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKDDIYVVCDIKDEK-- 476 (557)
T ss_pred EEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECCEEEEEeCCCCCC--
Confidence 999998643211 00 0112578999999999999998 8999999999999999999999986422
Q ss_pred cccceeeCcEEEEEcCC-CceEEccCCCCCCCCCcceEEEEECCEEEEEccCCCCCccCcEEEEcCCCCcccceeecCC
Q 011542 260 SRYDIYYNDTIILDRLS-AQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDPIAKRYTESP 337 (483)
Q Consensus 260 ~~~~~~~~~v~~yd~~~-~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~~~~~~d~w~l~~~~d~~~~~w~~~~ 337 (483)
...+.+++|||.+ ++|+.++.+ |.+|..+++++++++||++||.++.. ..+.||+.+++|+...
T Consensus 477 ----~~~~~ve~Ydp~~~~~W~~~~~m---~~~r~~~~~~~~~~~iyv~Gg~~~~~-------~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 477 ----NVKTCIFRYNTNTYNGWELITTT---ESRLSALHTILHDNTIMMLHCYESYM-------LQDTFNVYTYEWNHIC 541 (557)
T ss_pred ----ccceeEEEecCCCCCCeeEcccc---CcccccceeEEECCEEEEEeeeccee-------ehhhcCcccccccchh
Confidence 2335689999999 899999885 56999999999999999999988731 3678999999999774
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.9e-39 Score=337.62 Aligned_cols=254 Identities=21% Similarity=0.349 Sum_probs=230.1
Q ss_pred ceEEceeCCCCCCCCCCCcceeEEEECCcEEEEEcccC-CCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeE
Q 011542 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLV-DKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHI 81 (483)
Q Consensus 3 ~W~~~~~~~~~g~~p~~R~~h~~~~~~~~~l~v~GG~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~ 81 (483)
+|...+ ++|.+|..+++++++ +.||++||.+ +...++.+++||+.+++|+.++ ++..+|..++
T Consensus 312 ~w~~~a------~m~~~r~~~~~~~~~-~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a---------~M~~~R~~~~ 375 (571)
T KOG4441|consen 312 EWSSLA------PMPSPRCRVGVAVLN-GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA---------PMNTKRSDFG 375 (571)
T ss_pred cEeecC------CCCcccccccEEEEC-CEEEEEccccCCCcccceEEEecCCCCceeccC---------CccCccccce
Confidence 588887 799999999999998 5999999999 7888999999999999999987 6799999999
Q ss_pred EEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCc-CCccEEEEEC
Q 011542 82 AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK-WLSDVYVLDT 160 (483)
Q Consensus 82 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~ 160 (483)
++++++.||++||.++...++++++|||.+++|..+++ |+.+|+.|+++++++ +||++||.++.. +++++++|||
T Consensus 376 v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~---m~~~r~~~gv~~~~g-~iYi~GG~~~~~~~l~sve~YDP 451 (571)
T KOG4441|consen 376 VAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP---MLTRRSGHGVAVLGG-KLYIIGGGDGSSNCLNSVECYDP 451 (571)
T ss_pred eEEECCEEEEEeccccccccccEEEecCCCCcccccCC---CCcceeeeEEEEECC-EEEEEcCcCCCccccceEEEEcC
Confidence 99999999999999999999999999999999999986 888999999999965 999999998887 9999999999
Q ss_pred CCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEE
Q 011542 161 ISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTI 240 (483)
Q Consensus 161 ~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~ 240 (483)
.|++|+.++ +|+.+|.++++++++++||++||..+.. .++.++.|||.+++|+.+. +++.+|..+.+
T Consensus 452 ~t~~W~~~~---~M~~~R~~~g~a~~~~~iYvvGG~~~~~-------~~~~VE~ydp~~~~W~~v~---~m~~~rs~~g~ 518 (571)
T KOG4441|consen 452 ETNTWTLIA---PMNTRRSGFGVAVLNGKIYVVGGFDGTS-------ALSSVERYDPETNQWTMVA---PMTSPRSAVGV 518 (571)
T ss_pred CCCceeecC---CcccccccceEEEECCEEEEECCccCCC-------ccceEEEEcCCCCceeEcc---cCccccccccE
Confidence 999999999 9999999999999999999999998733 3577999999999999997 89999999999
Q ss_pred EEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEE
Q 011542 241 TSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTC 299 (483)
Q Consensus 241 ~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~ 299 (483)
++.++++|++||++.. .+.+.+..|||.+++|+....+ ...|...++++
T Consensus 519 ~~~~~~ly~vGG~~~~-------~~l~~ve~ydp~~d~W~~~~~~---~~~~~~~~~~~ 567 (571)
T KOG4441|consen 519 VVLGGKLYAVGGFDGN-------NNLNTVECYDPETDTWTEVTEP---ESGRGGAGVAV 567 (571)
T ss_pred EEECCEEEEEecccCc-------cccceeEEcCCCCCceeeCCCc---cccccCcceEE
Confidence 9999999999997764 4789999999999999998872 23444444444
No 8
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.1e-37 Score=310.38 Aligned_cols=274 Identities=24% Similarity=0.368 Sum_probs=214.0
Q ss_pred cCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccC--CCCCccEEEEECCCCeEEEeecCCCCCCC-Ccc
Q 011542 53 IDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFG--SRRLGDFWVLDTDIWQWSELTSFGDLPSP-RDF 129 (483)
Q Consensus 53 ~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~--~~~~~~~~~yd~~t~~W~~l~~~~~~p~~-r~~ 129 (483)
+...+|..+...+ ..+|.+|.+|++++++++|||+||... ....+++++||+.+++|..+++.+..|.. +..
T Consensus 4 ~~~~~W~~~~~~~-----~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~ 78 (341)
T PLN02153 4 TLQGGWIKVEQKG-----GKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLG 78 (341)
T ss_pred ccCCeEEEecCCC-----CCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCc
Confidence 4667899987542 246899999999999999999999854 23457999999999999998864444443 446
Q ss_pred cEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccC--CCCCCCCcCceEEEeCCEEEEEccCCCCCCccccee
Q 011542 130 AAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVT--GSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLW 207 (483)
Q Consensus 130 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~--~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~ 207 (483)
|+++++++ +||||||......++++++||+.+++|+.++.. ...|.+|..|+++.++++|||+||....+. .+...
T Consensus 79 ~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~-~~~~~ 156 (341)
T PLN02153 79 VRMVAVGT-KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGL-MKTPE 156 (341)
T ss_pred eEEEEECC-EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCc-cCCCc
Confidence 78888866 999999998777789999999999999998721 123889999999999999999999865431 11112
Q ss_pred cccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCC-cccceeeCcEEEEEcCCCceEEccCCC
Q 011542 208 ALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWL-SRYDIYYNDTIILDRLSAQWKRLPIGN 286 (483)
Q Consensus 208 ~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~-~~~~~~~~~v~~yd~~~~~W~~v~~~~ 286 (483)
.++.+++||+.+++|+.++..+..|.+|.+|++++.+++|||+||....-.. .......+++++||+.+++|+.++..+
T Consensus 157 ~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g 236 (341)
T PLN02153 157 RFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTG 236 (341)
T ss_pred ccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccC
Confidence 3577889999999999998666667899999999999999999997531000 000123688999999999999998766
Q ss_pred CCCCCCcceEEEEECCEEEEEccCCC---------CCccCcEEEEcCCCCcccceeecCC
Q 011542 287 EPPPARAYHSMTCLGSLYLLFGGFDG---------KSTFGDIWWLVPEEDPIAKRYTESP 337 (483)
Q Consensus 287 ~~p~~R~~~~~~~~~~~i~v~GG~~~---------~~~~~d~w~l~~~~d~~~~~w~~~~ 337 (483)
..|.+|..|++++++++||||||... ....+|+|.|+ +.+++|+...
T Consensus 237 ~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d----~~~~~W~~~~ 292 (341)
T PLN02153 237 AKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALD----TETLVWEKLG 292 (341)
T ss_pred CCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEE----cCccEEEecc
Confidence 66889999999999999999999742 22356887655 4577787664
No 9
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=8.2e-38 Score=321.93 Aligned_cols=279 Identities=35% Similarity=0.611 Sum_probs=246.8
Q ss_pred CCCCCCCCCcceeEEEECCcEEEEEcccCCCccccc--eEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEE
Q 011542 12 FGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSD--VVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHM 89 (483)
Q Consensus 12 ~~g~~p~~R~~h~~~~~~~~~l~v~GG~~~~~~~~~--~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~i 89 (483)
..+..|.+|.+|+++.++ +++|||||........+ +|+||..+..|......+. .|.+|++|++++++++|
T Consensus 53 ~~~~~p~~R~~hs~~~~~-~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~------~p~~r~g~~~~~~~~~l 125 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIG-NKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGD------EPSPRYGHSLSAVGDKL 125 (482)
T ss_pred cCCCCcchhhccceeEEC-CEEEEECCCCCCCccccceeEEeecCCcccccccccCC------CCCcccceeEEEECCeE
Confidence 456789999999999996 59999999876655555 9999999999999887654 57899999999999999
Q ss_pred EEEccccC-CCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCc-CCccEEEEECCCCceEE
Q 011542 90 FIFGGRFG-SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK-WLSDVYVLDTISLEWMQ 167 (483)
Q Consensus 90 yv~GG~~~-~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~ 167 (483)
|+|||.+. ...+++++.||+.|++|..+.+.+++|.+|.+|+++++++ ++|||||.+... ..+++|+||+.+.+|.+
T Consensus 126 ~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~-~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~ 204 (482)
T KOG0379|consen 126 YLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGT-KLVVFGGIGGTGDSLNDLHIYDLETSTWSE 204 (482)
T ss_pred EEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECC-EEEEECCccCcccceeeeeeecccccccee
Confidence 99999985 5668899999999999999999999999999999999986 999999998776 89999999999999999
Q ss_pred eccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEE
Q 011542 168 LPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYL 247 (483)
Q Consensus 168 i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i 247 (483)
+.+.|..|.||++|+++.++++++||||......+++|+|.| |+.+.+|..+...+..|.+|.+|+.++.++.+
T Consensus 205 ~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~l------dl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~ 278 (482)
T KOG0379|consen 205 LDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHIL------DLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHL 278 (482)
T ss_pred cccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEee------ecccceeeeccccCCCCCCcceeeeEEECCEE
Confidence 999999999999999999999999999988666677777776 99999999888889999999999999999999
Q ss_pred EEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCC-CCCCCCcceEEEEEC----CEEEEEcc
Q 011542 248 LLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGN-EPPPARAYHSMTCLG----SLYLLFGG 309 (483)
Q Consensus 248 ~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~-~~p~~R~~~~~~~~~----~~i~v~GG 309 (483)
+++||..... .....++|.||..+..|..+.... ..|.+|..|+.+.+. ....++||
T Consensus 279 ~l~gG~~~~~-----~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
T KOG0379|consen 279 LLFGGGTDPK-----QEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGG 340 (482)
T ss_pred EEEcCCcccc-----cccccccccccccccceeeeeccccccccccccccceeeccCCccceeeecC
Confidence 9999987642 015789999999999999998887 678999999988874 23445555
No 10
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=7.3e-39 Score=308.34 Aligned_cols=343 Identities=29% Similarity=0.533 Sum_probs=277.5
Q ss_pred CcceEEceeCCCCCCCCCCCcceeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCccee
Q 011542 1 MHYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFH 80 (483)
Q Consensus 1 ~~~W~~~~~~~~~g~~p~~R~~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h 80 (483)
+.+|.++. .+.|+.|.||.||.++.+. +-|+||||-+. +..+++++|+..+++|+..+..+ +.|.+...|
T Consensus 16 ~~rWrrV~--~~tGPvPrpRHGHRAVaik-ELiviFGGGNE-GiiDELHvYNTatnqWf~PavrG------DiPpgcAA~ 85 (830)
T KOG4152|consen 16 VVRWRRVQ--QSTGPVPRPRHGHRAVAIK-ELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRG------DIPPGCAAF 85 (830)
T ss_pred ccceEEEe--cccCCCCCccccchheeee-eeEEEecCCcc-cchhhhhhhccccceeecchhcC------CCCCchhhc
Confidence 35899997 5679999999999999998 69999999744 56799999999999999987655 478888899
Q ss_pred EEEEECCEEEEEccccC-CCCCccEEEEECCCCeEEEeec----CCCCCCCCcccEEEEECCcEEEEEecCCC-------
Q 011542 81 IAVAIDCHMFIFGGRFG-SRRLGDFWVLDTDIWQWSELTS----FGDLPSPRDFAAASAIGNRKIVMYGGWDG------- 148 (483)
Q Consensus 81 ~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~t~~W~~l~~----~~~~p~~r~~~~~~~~~~~~iyv~GG~~~------- 148 (483)
..+..+.+||+|||+.. +++.||+|.+....+.|+++.+ .|.+|++|.+|+...+++ +.|+|||..+
T Consensus 86 GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gn-KcYlFGGLaNdseDpkn 164 (830)
T KOG4152|consen 86 GFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGN-KCYLFGGLANDSEDPKN 164 (830)
T ss_pred ceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEecc-EeEEeccccccccCccc
Confidence 99999999999999987 7788999988888889988754 567899999999999987 9999999743
Q ss_pred --CcCCccEEEEECCCC----ceEEeccCCCCCCCCcCceEEEe------CCEEEEEccCCCCCCcccceeccccccccc
Q 011542 149 --KKWLSDVYVLDTISL----EWMQLPVTGSVPPPRCGHTATMV------EKRLLIYGGRGGGGPIMGDLWALKGLIEEE 216 (483)
Q Consensus 149 --~~~~~~v~~yd~~t~----~W~~i~~~~~~p~~r~~~~~~~~------~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd 216 (483)
..++||+|++++.-+ -|...-..|..|.+|..|+++.. ..++||+||..+- .+.|+|.| |
T Consensus 165 NvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~--RLgDLW~L------d 236 (830)
T KOG4152|consen 165 NVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC--RLGDLWTL------D 236 (830)
T ss_pred ccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc--cccceeEE------e
Confidence 247999999998744 49998888999999999999987 2489999998764 56777777 9
Q ss_pred CCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCC----C---CCCcccceeeCcEEEEEcCCCceEEccCC----
Q 011542 217 NETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGT----G---GWLSRYDIYYNDTIILDRLSAQWKRLPIG---- 285 (483)
Q Consensus 217 ~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~----~---~~~~~~~~~~~~v~~yd~~~~~W~~v~~~---- 285 (483)
+++.+|.+....|-.|.||.-|+++.+++++|||||.-- + .....+-.+.+++-.+|++++.|..+-.-
T Consensus 237 l~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed 316 (830)
T KOG4152|consen 237 LDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLED 316 (830)
T ss_pred cceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccc
Confidence 999999999999999999999999999999999999631 1 11223345788899999999999986321
Q ss_pred CCCCCCCcceEEEEECCEEEEEccCCCCC-------ccCcEEEEcCCCCcccceeecCCCCCCCCCCcccccccccceec
Q 011542 286 NEPPPARAYHSMTCLGSLYLLFGGFDGKS-------TFGDIWWLVPEEDPIAKRYTESPPKVLPENKDVGMENYNSQFAV 358 (483)
Q Consensus 286 ~~~p~~R~~~~~~~~~~~i~v~GG~~~~~-------~~~d~w~l~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~l~~ 358 (483)
.-.|.+|.+|+++.++.++|+..|.+|-. ...|+|.|+.+..+.-.+.... .......++.+
T Consensus 317 ~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekPp~P~~VQL~-----------rA~tNSlevsW 385 (830)
T KOG4152|consen 317 NTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKPPPPARVQLV-----------RANTNSLEVSW 385 (830)
T ss_pred cccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcccCCCCCceEEEE-----------ecccceeEEec
Confidence 11488999999999999999999988632 4567777765543332222211 22334456777
Q ss_pred ccccccchhHhhhhh
Q 011542 359 KESQRESSAIVELQK 373 (483)
Q Consensus 359 ~~~~~~~~~l~~l~~ 373 (483)
..-.....|+++|++
T Consensus 386 ~~V~ta~gYlLQl~~ 400 (830)
T KOG4152|consen 386 GAVATADGYLLQLQY 400 (830)
T ss_pred hhhccccceeEEeec
Confidence 777888888888874
No 11
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=2.9e-37 Score=308.35 Aligned_cols=278 Identities=22% Similarity=0.303 Sum_probs=214.7
Q ss_pred CCCCCCcceeEEEECCcEEEEEcccCCCccccceEEEEc--CCCcEEeeeecCCCCCCCCCC-CCcceeEEEEECCEEEE
Q 011542 15 TVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDI--DNKLWFQPECTGNGSNGQVGP-GPRAFHIAVAIDCHMFI 91 (483)
Q Consensus 15 ~~p~~R~~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~~~~~~~~~~p-~~R~~h~~~~~~~~iyv 91 (483)
++|.+|..+++++++ ++|||+||... +++++||+ .+++|..++ ++| .+|..|++++++++||+
T Consensus 3 ~lp~~~~~~~~~~~~-~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~---------~~p~~~R~~~~~~~~~~~iYv 68 (346)
T TIGR03547 3 DLPVGFKNGTGAIIG-DKVYVGLGSAG----TSWYKLDLKKPSKGWQKIA---------DFPGGPRNQAVAAAIDGKLYV 68 (346)
T ss_pred CCCccccCceEEEEC-CEEEEEccccC----CeeEEEECCCCCCCceECC---------CCCCCCcccceEEEECCEEEE
Confidence 588999998888887 69999999743 67899996 578999987 456 58999999999999999
Q ss_pred EccccCC------CCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCc---------------
Q 011542 92 FGGRFGS------RRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK--------------- 150 (483)
Q Consensus 92 ~GG~~~~------~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~--------------- 150 (483)
+||.... ..++++|+||+.+++|++++. .+|.+|..++++++.+++||++||.+...
T Consensus 69 ~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 146 (346)
T TIGR03547 69 FGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDS 146 (346)
T ss_pred EeCCCCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccc
Confidence 9998642 147899999999999999873 36777877877743356999999986321
Q ss_pred -------------------CCccEEEEECCCCceEEeccCCCCCC-CCcCceEEEeCCEEEEEccCCCCCCcccceeccc
Q 011542 151 -------------------WLSDVYVLDTISLEWMQLPVTGSVPP-PRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALK 210 (483)
Q Consensus 151 -------------------~~~~v~~yd~~t~~W~~i~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~ 210 (483)
..+++++||+.+++|+.++ ++|. +|++++++.++++|||+||....+.. ..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~------~~ 217 (346)
T TIGR03547 147 EPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNKLLLINGEIKPGLR------TA 217 (346)
T ss_pred hhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEECCEEEEEeeeeCCCcc------ch
Confidence 2478999999999999998 8885 68999999999999999997543311 12
Q ss_pred ccccc--cCCCCCeEEeccCCCCCCCC-------eeeEEEEeCCEEEEEcCCCCCCCC----------cccceeeCcEEE
Q 011542 211 GLIEE--ENETPGWTQLKLPGQAPSSR-------CGHTITSGGHYLLLFGGHGTGGWL----------SRYDIYYNDTII 271 (483)
Q Consensus 211 ~~~~y--d~~~~~W~~~~~~g~~p~~r-------~~~~~~~~~~~i~v~GG~~~~~~~----------~~~~~~~~~v~~ 271 (483)
.++.| |+++++|+.++ ++|.+| .+|++++.+++||++||....+.. .......+.+.+
T Consensus 218 ~~~~y~~~~~~~~W~~~~---~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 294 (346)
T TIGR03547 218 EVKQYLFTGGKLEWNKLP---PLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEV 294 (346)
T ss_pred heEEEEecCCCceeeecC---CCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeE
Confidence 33334 56778999988 565544 466677899999999998632110 000012246899
Q ss_pred EEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEccCCCC-CccCcEEEEc
Q 011542 272 LDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGK-STFGDIWWLV 323 (483)
Q Consensus 272 yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~~-~~~~d~w~l~ 323 (483)
||+.+++|+.+..+ |.+|..+++++++++|||+||.+.. ..++|++.+.
T Consensus 295 yd~~~~~W~~~~~l---p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 295 YALDNGKWSKVGKL---PQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred EEecCCcccccCCC---CCCceeeEEEEcCCEEEEEeccCCCCCEeeeEEEEE
Confidence 99999999999875 5588889888999999999998754 4677777654
No 12
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=4.2e-38 Score=330.28 Aligned_cols=241 Identities=14% Similarity=0.194 Sum_probs=211.8
Q ss_pred ceEEceeCCCCCCCCCCCcceeEEEECCcEEEEEcccC-CCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeE
Q 011542 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLV-DKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHI 81 (483)
Q Consensus 3 ~W~~~~~~~~~g~~p~~R~~h~~~~~~~~~l~v~GG~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~ 81 (483)
+|..++ ++|.+|.+|++++++ ++||++||.+ +....+++++||+.+++|..++ ++|.+|..++
T Consensus 283 ~W~~l~------~mp~~r~~~~~a~l~-~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~---------~m~~~R~~~~ 346 (557)
T PHA02713 283 EYSVIS------TIPNHIINYASAIVD-NEIIIAGGYNFNNPSLNKVYKINIENKIHVELP---------PMIKNRCRFS 346 (557)
T ss_pred eEEECC------CCCccccceEEEEEC-CEEEEEcCCCCCCCccceEEEEECCCCeEeeCC---------CCcchhhcee
Confidence 688887 689999999998887 5999999985 3445789999999999999876 6789999999
Q ss_pred EEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCC------------
Q 011542 82 AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK------------ 149 (483)
Q Consensus 82 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~------------ 149 (483)
+++++++||++||.++...++++++|||.+++|..+++ ||.+|..++++++++ +||++||.++.
T Consensus 347 ~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~---mp~~r~~~~~~~~~g-~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 347 LAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD---MPIALSSYGMCVLDQ-YIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred EEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCC---CCcccccccEEEECC-EEEEEeCCCcccccccccccccc
Confidence 99999999999999876678899999999999999985 999999999999865 99999998642
Q ss_pred ------cCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCC-CCe
Q 011542 150 ------KWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENET-PGW 222 (483)
Q Consensus 150 ------~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~-~~W 222 (483)
...+++++|||.+++|+.++ +|+.+|..++++.++++|||+||.+.... ..+.+++|||++ ++|
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~~IYv~GG~~~~~~------~~~~ve~Ydp~~~~~W 493 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKDDIYVVCDIKDEKN------VKTCIFRYNTNTYNGW 493 (557)
T ss_pred cccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECCEEEEEeCCCCCCc------cceeEEEecCCCCCCe
Confidence 13678999999999999998 99999999999999999999999864321 125678999999 899
Q ss_pred EEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCC
Q 011542 223 TQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIG 285 (483)
Q Consensus 223 ~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~ 285 (483)
+.++ ++|.+|..+++++.+++||++||.+. ..++.+||+.+++|+.+...
T Consensus 494 ~~~~---~m~~~r~~~~~~~~~~~iyv~Gg~~~----------~~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 494 ELIT---TTESRLSALHTILHDNTIMMLHCYES----------YMLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred eEcc---ccCcccccceeEEECCEEEEEeeecc----------eeehhhcCcccccccchhhh
Confidence 9998 89999999999999999999999864 13689999999999998765
No 13
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=6.3e-37 Score=302.81 Aligned_cols=268 Identities=19% Similarity=0.298 Sum_probs=210.8
Q ss_pred CCCcceeEEEECCcEEEEEcccCCC----------ccccceEEEE-cC-CCcEEeeeecCCCCCCCCCCCCcceeEEEEE
Q 011542 18 QPRSGHSAVNIGKSKVVVFGGLVDK----------RFLSDVVVYD-ID-NKLWFQPECTGNGSNGQVGPGPRAFHIAVAI 85 (483)
Q Consensus 18 ~~R~~h~~~~~~~~~l~v~GG~~~~----------~~~~~~~~yd-~~-~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~ 85 (483)
..+.||.+++++ +.|||+||.+.. ...+++++|+ +. +.+|..++ ++|.+|..++++++
T Consensus 2 ~~~~g~~~~~~~-~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~---------~lp~~r~~~~~~~~ 71 (323)
T TIGR03548 2 LGVAGCYAGIIG-DYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDG---------QLPYEAAYGASVSV 71 (323)
T ss_pred CceeeEeeeEEC-CEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcc---------cCCccccceEEEEE
Confidence 457788899998 489999998642 2456889886 33 23798876 56889988888999
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeE----EEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECC
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQW----SELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI 161 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W----~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 161 (483)
+++||++||.++...++++++||+.+++| ..++ ++|.+|..|+++++++ +|||+||.......+++++||+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~---~lp~~~~~~~~~~~~~-~iYv~GG~~~~~~~~~v~~yd~~ 147 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIG---NLPFTFENGSACYKDG-TLYVGGGNRNGKPSNKSYLFNLE 147 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC---CCCcCccCceEEEECC-EEEEEeCcCCCccCceEEEEcCC
Confidence 99999999998777789999999999998 4444 5999999999998865 99999998666668999999999
Q ss_pred CCceEEeccCCCCC-CCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCC--CCCCCCeee
Q 011542 162 SLEWMQLPVTGSVP-PPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPG--QAPSSRCGH 238 (483)
Q Consensus 162 t~~W~~i~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g--~~p~~r~~~ 238 (483)
+++|++++ ++| .+|..|+++.++++|||+||..... ...+++||+++++|+.+.... ..|..+.++
T Consensus 148 ~~~W~~~~---~~p~~~r~~~~~~~~~~~iYv~GG~~~~~--------~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~ 216 (323)
T TIGR03548 148 TQEWFELP---DFPGEPRVQPVCVKLQNELYVFGGGSNIA--------YTDGYKYSPKKNQWQKVADPTTDSEPISLLGA 216 (323)
T ss_pred CCCeeECC---CCCCCCCCcceEEEECCEEEEEcCCCCcc--------ccceEEEecCCCeeEECCCCCCCCCceeccce
Confidence 99999997 676 4799999999999999999975432 245678999999999987431 234444444
Q ss_pred EEE-EeCCEEEEEcCCCCCCCCc-------------------------ccceeeCcEEEEEcCCCceEEccCCCCCCCCC
Q 011542 239 TIT-SGGHYLLLFGGHGTGGWLS-------------------------RYDIYYNDTIILDRLSAQWKRLPIGNEPPPAR 292 (483)
Q Consensus 239 ~~~-~~~~~i~v~GG~~~~~~~~-------------------------~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R 292 (483)
+++ +.+++||++||.+...... ....+.+++++||+.+++|+.++.+ +..+|
T Consensus 217 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--p~~~r 294 (323)
T TIGR03548 217 ASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNS--PFFAR 294 (323)
T ss_pred eEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccc--ccccc
Confidence 444 5678999999986421000 0011347899999999999999865 33589
Q ss_pred cceEEEEECCEEEEEccCCC
Q 011542 293 AYHSMTCLGSLYLLFGGFDG 312 (483)
Q Consensus 293 ~~~~~~~~~~~i~v~GG~~~ 312 (483)
..++++.++++||++||...
T Consensus 295 ~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 295 CGAALLLTGNNIFSINGELK 314 (323)
T ss_pred CchheEEECCEEEEEecccc
Confidence 99999999999999999643
No 14
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.4e-36 Score=305.98 Aligned_cols=282 Identities=20% Similarity=0.259 Sum_probs=215.1
Q ss_pred CCCCCCcceeEEEECCcEEEEEcccCCCccccceEEEEcC--CCcEEeeeecCCCCCCCCCC-CCcceeEEEEECCEEEE
Q 011542 15 TVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDID--NKLWFQPECTGNGSNGQVGP-GPRAFHIAVAIDCHMFI 91 (483)
Q Consensus 15 ~~p~~R~~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~~~~~~~~~~p-~~R~~h~~~~~~~~iyv 91 (483)
++|.+|..+++++++ ++|||+||... +.+++||+. +++|..++. +| .+|.+|++++++++||+
T Consensus 24 ~lP~~~~~~~~~~~~-~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~---------~p~~~r~~~~~v~~~~~IYV 89 (376)
T PRK14131 24 DLPVPFKNGTGAIDN-NTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAA---------FPGGPREQAVAAFIDGKLYV 89 (376)
T ss_pred CCCcCccCCeEEEEC-CEEEEEeCCCC----CeEEEEECCCCCCCeEECCc---------CCCCCcccceEEEECCEEEE
Confidence 799999988888886 69999999743 458999987 478998863 34 48999999999999999
Q ss_pred EccccC------CCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCC----------------
Q 011542 92 FGGRFG------SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK---------------- 149 (483)
Q Consensus 92 ~GG~~~------~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~---------------- 149 (483)
+||+.. ...++++|+||+.+++|+.+++ ..|.++..|+++++.+++||++||....
T Consensus 90 ~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~ 167 (376)
T PRK14131 90 FGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDK 167 (376)
T ss_pred EcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccch
Confidence 999864 1246889999999999999974 3577788888877445699999997532
Q ss_pred ------------------cCCccEEEEECCCCceEEeccCCCCCC-CCcCceEEEeCCEEEEEccCCCCCCcccceeccc
Q 011542 150 ------------------KWLSDVYVLDTISLEWMQLPVTGSVPP-PRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALK 210 (483)
Q Consensus 150 ------------------~~~~~v~~yd~~t~~W~~i~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~ 210 (483)
...+++++||+.+++|+.+. ++|. +|.+|+++.++++|||+||....+....+++.
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~-- 242 (376)
T PRK14131 168 TPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQ-- 242 (376)
T ss_pred hhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheE--
Confidence 12478999999999999987 7885 78899999999999999997544322222222
Q ss_pred ccccccCCCCCeEEeccCCCCCCCCe--------eeEEEEeCCEEEEEcCCCCCCCCc--------c--cceeeCcEEEE
Q 011542 211 GLIEEENETPGWTQLKLPGQAPSSRC--------GHTITSGGHYLLLFGGHGTGGWLS--------R--YDIYYNDTIIL 272 (483)
Q Consensus 211 ~~~~yd~~~~~W~~~~~~g~~p~~r~--------~~~~~~~~~~i~v~GG~~~~~~~~--------~--~~~~~~~v~~y 272 (483)
..||+++++|+.+. ++|.+|. ++.+++.+++|||+||.+..+... . .......+.+|
T Consensus 243 --~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~y 317 (376)
T PRK14131 243 --GKFTGNNLKWQKLP---DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIY 317 (376)
T ss_pred --EEecCCCcceeecC---CCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheE
Confidence 24588999999988 5666553 233567899999999976422100 0 00012357789
Q ss_pred EcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEccCCCC-CccCcEEEEcCC
Q 011542 273 DRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGK-STFGDIWWLVPE 325 (483)
Q Consensus 273 d~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~~-~~~~d~w~l~~~ 325 (483)
|+.+++|+.++.+ |.+|..++++.++++|||+||.... ..+++++.+...
T Consensus 318 d~~~~~W~~~~~l---p~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~ 368 (376)
T PRK14131 318 ALVNGKWQKVGEL---PQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWD 368 (376)
T ss_pred EecCCcccccCcC---CCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEc
Confidence 9999999998765 5589999999999999999997643 577888876654
No 15
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=3.4e-36 Score=269.14 Aligned_cols=241 Identities=28% Similarity=0.499 Sum_probs=209.1
Q ss_pred cceEEceeC----CCCC---CCCCCCcceeEEEECCcEEEEEcccCC-CccccceEEEEcCCCcEEeeeecCCCCCCCCC
Q 011542 2 HYWVRASSS----DFGG---TVPQPRSGHSAVNIGKSKVVVFGGLVD-KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVG 73 (483)
Q Consensus 2 ~~W~~~~~~----~~~g---~~p~~R~~h~~~~~~~~~l~v~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~ 73 (483)
++|++.+|- ...+ ..|..|+||+++.+. +++||+||.++ .+..+-++.|||.++.|......+ -.
T Consensus 54 ~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~-d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G------~v 126 (392)
T KOG4693|consen 54 YRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ-DKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEG------FV 126 (392)
T ss_pred eeEEecCcccccccccCCCCccchhhcCceEEEEc-ceEEEEcCccCcccccceeeeeccccccccccceee------ec
Confidence 689998872 1222 356789999999998 59999999986 678899999999999999977654 36
Q ss_pred CCCcceeEEEEECCEEEEEccccC--CCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCC--
Q 011542 74 PGPRAFHIAVAIDCHMFIFGGRFG--SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK-- 149 (483)
Q Consensus 74 p~~R~~h~~~~~~~~iyv~GG~~~--~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~-- 149 (483)
|.+|-+|++|++++.+|||||+.. +...++++++|..|.+|+.+.+.+.+|.=|..|++++++ +.+|||||+...
T Consensus 127 PgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~-~~MYiFGGR~D~~g 205 (392)
T KOG4693|consen 127 PGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVID-GMMYIFGGRSDESG 205 (392)
T ss_pred CCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhcc-ceEEEeccccccCC
Confidence 889999999999999999999975 566789999999999999999999999999999999997 499999998642
Q ss_pred -------cCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCe
Q 011542 150 -------KWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGW 222 (483)
Q Consensus 150 -------~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W 222 (483)
.+.+.+-.+|..|..|...++.+-.|..|..|++.+.+++||||||+.+.-+. .++++++|||.+..|
T Consensus 206 pfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~-----HfndLy~FdP~t~~W 280 (392)
T KOG4693|consen 206 PFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNV-----HFNDLYCFDPKTSMW 280 (392)
T ss_pred CccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhh-----hhcceeecccccchh
Confidence 35677888999999999998888889999999999999999999998764321 245666679999999
Q ss_pred EEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCC
Q 011542 223 TQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGT 255 (483)
Q Consensus 223 ~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~ 255 (483)
..+...|.-|.+|..+++++.++++|+|||.+.
T Consensus 281 ~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 281 SVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred eeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 999999999999999999999999999999654
No 16
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=5.4e-35 Score=308.66 Aligned_cols=268 Identities=16% Similarity=0.139 Sum_probs=220.5
Q ss_pred EEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCC-CCCccEEEEECC
Q 011542 32 KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGS-RRLGDFWVLDTD 110 (483)
Q Consensus 32 ~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~ 110 (483)
.+++.||.. .....+..|++...+|..++. .| .+.+|+++++++.||++||.... ...+++++||+.
T Consensus 252 ~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~ 319 (534)
T PHA03098 252 IIYIHITMS--IFTYNYITNYSPLSEINTIID---------IH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTK 319 (534)
T ss_pred ceEeecccc--hhhceeeecchhhhhcccccC---------cc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCC
Confidence 455556654 233456678888999988752 23 24567889999999999998763 346789999999
Q ss_pred CCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEeCCEE
Q 011542 111 IWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRL 190 (483)
Q Consensus 111 t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~l 190 (483)
+++|..+++ +|.+|..|+++++++ +||++||.+.....+++++||+.+++|+.++ ++|.+|.+|+++.++++|
T Consensus 320 ~~~W~~~~~---~~~~R~~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~i 392 (534)
T PHA03098 320 TKSWNKVPE---LIYPRKNPGVTVFNN-RIYVIGGIYNSISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNLI 392 (534)
T ss_pred CCeeeECCC---CCcccccceEEEECC-EEEEEeCCCCCEecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCEE
Confidence 999999875 889999999999865 9999999987777899999999999999998 899999999999999999
Q ss_pred EEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEE
Q 011542 191 LIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTI 270 (483)
Q Consensus 191 yv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~ 270 (483)
||+||...... .++.+++||+.+++|+.+. ++|.+|.+|++++.+++||++||.+.... ....++++
T Consensus 393 Yv~GG~~~~~~------~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~----~~~~~~v~ 459 (534)
T PHA03098 393 YVIGGISKNDE------LLKTVECFSLNTNKWSKGS---PLPISHYGGCAIYHDGKIYVIGGISYIDN----IKVYNIVE 459 (534)
T ss_pred EEECCcCCCCc------ccceEEEEeCCCCeeeecC---CCCccccCceEEEECCEEEEECCccCCCC----CcccceEE
Confidence 99999754432 2477889999999999987 78999999999999999999999865321 11346799
Q ss_pred EEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEccCCCCCccCcEEEEcCCCCcccceeecCCC
Q 011542 271 ILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDPIAKRYTESPP 338 (483)
Q Consensus 271 ~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~~~~~~d~w~l~~~~d~~~~~w~~~~~ 338 (483)
+||+.+++|+.++.+ |.+|..++++.++++|||+||.+.....++++ .||+.+++|+..+.
T Consensus 460 ~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~----~yd~~~~~W~~~~~ 520 (534)
T PHA03098 460 SYNPVTNKWTELSSL---NFPRINASLCIFNNKIYVVGGDKYEYYINEIE----VYDDKTNTWTLFCK 520 (534)
T ss_pred EecCCCCceeeCCCC---CcccccceEEEECCEEEEEcCCcCCcccceeE----EEeCCCCEEEecCC
Confidence 999999999999875 45799999999999999999988766567765 46677889987754
No 17
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.7e-34 Score=304.94 Aligned_cols=235 Identities=19% Similarity=0.255 Sum_probs=202.0
Q ss_pred CcceeEEEECCcEEEEEcccCCC-ccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCC
Q 011542 20 RSGHSAVNIGKSKVVVFGGLVDK-RFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGS 98 (483)
Q Consensus 20 R~~h~~~~~~~~~l~v~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~ 98 (483)
+..|++++++ +.||++||.... ...+++++||+.+++|..++ ++|.+|.+|++++++++||++||....
T Consensus 285 ~~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---------~~~~~R~~~~~~~~~~~lyv~GG~~~~ 354 (534)
T PHA03098 285 VYCFGSVVLN-NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP---------ELIYPRKNPGVTVFNNRIYVIGGIYNS 354 (534)
T ss_pred cccceEEEEC-CEEEEECCCcCCCCeeccEEEEeCCCCeeeECC---------CCCcccccceEEEECCEEEEEeCCCCC
Confidence 4456777777 599999998753 35679999999999998876 568899999999999999999999876
Q ss_pred CCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCC-CcCCccEEEEECCCCceEEeccCCCCCCC
Q 011542 99 RRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDG-KKWLSDVYVLDTISLEWMQLPVTGSVPPP 177 (483)
Q Consensus 99 ~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~i~~~~~~p~~ 177 (483)
...+++++||+.+++|+.+++ +|.+|..|+++++++ +||++||... ...++++++||+.+++|+.++ ++|.+
T Consensus 355 ~~~~~v~~yd~~~~~W~~~~~---lp~~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~ 427 (534)
T PHA03098 355 ISLNTVESWKPGESKWREEPP---LIFPRYNPCVVNVNN-LIYVIGGISKNDELLKTVECFSLNTNKWSKGS---PLPIS 427 (534)
T ss_pred EecceEEEEcCCCCceeeCCC---cCcCCccceEEEECC-EEEEECCcCCCCcccceEEEEeCCCCeeeecC---CCCcc
Confidence 778899999999999999885 899999999988865 9999999753 345789999999999999998 89999
Q ss_pred CcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCC
Q 011542 178 RCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGG 257 (483)
Q Consensus 178 r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~ 257 (483)
|.+|+++.++++|||+||....... ..++.+++||+.+++|+.++ ++|.+|..+++++.+++||++||.....
T Consensus 428 r~~~~~~~~~~~iyv~GG~~~~~~~----~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 500 (534)
T PHA03098 428 HYGGCAIYHDGKIYVIGGISYIDNI----KVYNIVESYNPVTNKWTELS---SLNFPRINASLCIFNNKIYVVGGDKYEY 500 (534)
T ss_pred ccCceEEEECCEEEEECCccCCCCC----cccceEEEecCCCCceeeCC---CCCcccccceEEEECCEEEEEcCCcCCc
Confidence 9999999999999999997643311 12456889999999999998 6788999999999999999999987532
Q ss_pred CCcccceeeCcEEEEEcCCCceEEccCC
Q 011542 258 WLSRYDIYYNDTIILDRLSAQWKRLPIG 285 (483)
Q Consensus 258 ~~~~~~~~~~~v~~yd~~~~~W~~v~~~ 285 (483)
..+++++||+.+++|+.++..
T Consensus 501 -------~~~~v~~yd~~~~~W~~~~~~ 521 (534)
T PHA03098 501 -------YINEIEVYDDKTNTWTLFCKF 521 (534)
T ss_pred -------ccceeEEEeCCCCEEEecCCC
Confidence 468899999999999998764
No 18
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=2.1e-34 Score=296.71 Aligned_cols=252 Identities=40% Similarity=0.688 Sum_probs=224.4
Q ss_pred CCCCCcceeEEEEECCEEEEEccccCCCCCcc--EEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCC-
Q 011542 72 VGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGD--FWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDG- 148 (483)
Q Consensus 72 ~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~--~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~- 148 (483)
..|.+|++|+++.+++++|+|||........+ +|++|..+..|......+..|.+|++|+++++++ +||+|||.+.
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~-~l~lfGG~~~~ 134 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGD-KLYLFGGTDKK 134 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECC-eEEEEccccCC
Confidence 57899999999999999999999987555555 9999999999999999999999999999999986 9999999985
Q ss_pred CcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccC
Q 011542 149 KKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLP 228 (483)
Q Consensus 149 ~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~ 228 (483)
...+++++.||+.|++|+.+.+.+.+|.+|.+|+++.++++||||||.+..+... +.+++||+.+.+|.++.+.
T Consensus 135 ~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~------ndl~i~d~~~~~W~~~~~~ 208 (482)
T KOG0379|consen 135 YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSL------NDLHIYDLETSTWSELDTQ 208 (482)
T ss_pred CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccce------eeeeeeccccccceecccC
Confidence 5668999999999999999999999999999999999999999999998876544 5555569999999999999
Q ss_pred CCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEc
Q 011542 229 GQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFG 308 (483)
Q Consensus 229 g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~G 308 (483)
|..|.||++|++++++++++||||.... +.+++|+|.||+.+..|..+...+..|.+|++|++++.+++++|+|
T Consensus 209 g~~P~pR~gH~~~~~~~~~~v~gG~~~~------~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~g 282 (482)
T KOG0379|consen 209 GEAPSPRYGHAMVVVGNKLLVFGGGDDG------DVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFG 282 (482)
T ss_pred CCCCCCCCCceEEEECCeEEEEeccccC------CceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEc
Confidence 9999999999999999999999998832 3699999999999999999988888899999999999999999999
Q ss_pred cCCCC--CccCcEEEEcCCCCcccceeecCCCCC
Q 011542 309 GFDGK--STFGDIWWLVPEEDPIAKRYTESPPKV 340 (483)
Q Consensus 309 G~~~~--~~~~d~w~l~~~~d~~~~~w~~~~~~~ 340 (483)
|.... ..+.|+|.|+.. +..|.......
T Consensus 283 G~~~~~~~~l~~~~~l~~~----~~~w~~~~~~~ 312 (482)
T KOG0379|consen 283 GGTDPKQEPLGDLYGLDLE----TLVWSKVESVG 312 (482)
T ss_pred CCccccccccccccccccc----ccceeeeeccc
Confidence 98875 268898876666 66676664333
No 19
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=4.1e-33 Score=288.61 Aligned_cols=214 Identities=19% Similarity=0.285 Sum_probs=187.1
Q ss_pred eeEEE-ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCC
Q 011542 23 HSAVN-IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRL 101 (483)
Q Consensus 23 h~~~~-~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~ 101 (483)
|+++. ++ +.||++||.++....+.+++|||.+++|..++ ++|.+|..+++++++++||++||..+.
T Consensus 264 ~~~~~~~~-~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~---------~m~~~r~~~~~v~~~~~iYviGG~~~~--- 330 (480)
T PHA02790 264 MCTSTHVG-EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIP---------PMNSPRLYASGVPANNKLYVVGGLPNP--- 330 (480)
T ss_pred CcceEEEC-CEEEEEcCCCCCCcCCeEEEEECCCCEEEECC---------CCCchhhcceEEEECCEEEEECCcCCC---
Confidence 44344 55 69999999977677789999999999999987 568899999999999999999997542
Q ss_pred ccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCc
Q 011542 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGH 181 (483)
Q Consensus 102 ~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~ 181 (483)
+.+++||+.+++|..+++ +|.+|..++++++++ +||++||.++. .+.+++||+.+++|+.++ +|+.+|.+|
T Consensus 331 ~sve~ydp~~n~W~~~~~---l~~~r~~~~~~~~~g-~IYviGG~~~~--~~~ve~ydp~~~~W~~~~---~m~~~r~~~ 401 (480)
T PHA02790 331 TSVERWFHGDAAWVNMPS---LLKPRCNPAVASINN-VIYVIGGHSET--DTTTEYLLPNHDQWQFGP---STYYPHYKS 401 (480)
T ss_pred CceEEEECCCCeEEECCC---CCCCCcccEEEEECC-EEEEecCcCCC--CccEEEEeCCCCEEEeCC---CCCCccccc
Confidence 569999999999999985 999999999999865 99999998643 467999999999999998 899999999
Q ss_pred eEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcc
Q 011542 182 TATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSR 261 (483)
Q Consensus 182 ~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~ 261 (483)
+++.++++|||+||. ++.||+++++|+.++ ++|.+|..+++++.+++||++||.+..
T Consensus 402 ~~~~~~~~IYv~GG~---------------~e~ydp~~~~W~~~~---~m~~~r~~~~~~v~~~~IYviGG~~~~----- 458 (480)
T PHA02790 402 CALVFGRRLFLVGRN---------------AEFYCESSNTWTLID---DPIYPRDNPELIIVDNKLLLIGGFYRG----- 458 (480)
T ss_pred eEEEECCEEEEECCc---------------eEEecCCCCcEeEcC---CCCCCccccEEEEECCEEEEECCcCCC-----
Confidence 999999999999983 356899999999998 789999999999999999999998643
Q ss_pred cceeeCcEEEEEcCCCceEEcc
Q 011542 262 YDIYYNDTIILDRLSAQWKRLP 283 (483)
Q Consensus 262 ~~~~~~~v~~yd~~~~~W~~v~ 283 (483)
...+.+++||+.+++|+...
T Consensus 459 --~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 459 --SYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred --cccceEEEEECCCCeEEecC
Confidence 24578999999999998754
No 20
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1e-32 Score=272.81 Aligned_cols=234 Identities=19% Similarity=0.287 Sum_probs=183.8
Q ss_pred cceEEceeCCCCCCCCCCCcceeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEE-eeeecCCCCCCCCCCCCccee
Q 011542 2 HYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWF-QPECTGNGSNGQVGPGPRAFH 80 (483)
Q Consensus 2 ~~W~~~~~~~~~g~~p~~R~~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~~~~~p~~R~~h 80 (483)
++|.++. ++|.+|..|++++++ ++||++||.++...++++++||+.+++|. .... .+++|.+|..|
T Consensus 51 ~~W~~~~------~lp~~r~~~~~~~~~-~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~------~~~lp~~~~~~ 117 (323)
T TIGR03548 51 LKWVKDG------QLPYEAAYGASVSVE-NGIYYIGGSNSSERFSSVYRITLDESKEELICET------IGNLPFTFENG 117 (323)
T ss_pred eeEEEcc------cCCccccceEEEEEC-CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeE------cCCCCcCccCc
Confidence 3688876 689999888888886 58999999987777899999999999983 1111 12578899999
Q ss_pred EEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCC-CCCcccEEEEECCcEEEEEecCCCCcCCccEEEEE
Q 011542 81 IAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP-SPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLD 159 (483)
Q Consensus 81 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p-~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd 159 (483)
++++++++||++||......++++++||+.+++|+++++ +| .+|..++++++++ +|||+||.++.. ..++++||
T Consensus 118 ~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~~r~~~~~~~~~~-~iYv~GG~~~~~-~~~~~~yd 192 (323)
T TIGR03548 118 SACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPD---FPGEPRVQPVCVKLQN-ELYVFGGGSNIA-YTDGYKYS 192 (323)
T ss_pred eEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCC---CCCCCCCcceEEEECC-EEEEEcCCCCcc-ccceEEEe
Confidence 999999999999998666668899999999999999975 66 4788888878865 999999986543 46789999
Q ss_pred CCCCceEEeccCC--CCCCCCcCceEEE-eCCEEEEEccCCCCCCccc-------------------------ceec-cc
Q 011542 160 TISLEWMQLPVTG--SVPPPRCGHTATM-VEKRLLIYGGRGGGGPIMG-------------------------DLWA-LK 210 (483)
Q Consensus 160 ~~t~~W~~i~~~~--~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~-------------------------d~~~-l~ 210 (483)
+.+++|+.++... ..|.++.+++++. .+++|||+||...... .+ +... .+
T Consensus 193 ~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (323)
T TIGR03548 193 PKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVY-NDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNR 271 (323)
T ss_pred cCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHH-HHHHhhhhhccchhhhhhHHHHhCCCccccCcCc
Confidence 9999999997321 2344444555444 4789999999864210 00 0001 25
Q ss_pred ccccccCCCCCeEEeccCCCCC-CCCeeeEEEEeCCEEEEEcCCCCCC
Q 011542 211 GLIEEENETPGWTQLKLPGQAP-SSRCGHTITSGGHYLLLFGGHGTGG 257 (483)
Q Consensus 211 ~~~~yd~~~~~W~~~~~~g~~p-~~r~~~~~~~~~~~i~v~GG~~~~~ 257 (483)
.+++||+.+++|+.+. ++| .+|.+++++..+++||++||....+
T Consensus 272 ~v~~yd~~~~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~pg 316 (323)
T TIGR03548 272 KILIYNVRTGKWKSIG---NSPFFARCGAALLLTGNNIFSINGELKPG 316 (323)
T ss_pred eEEEEECCCCeeeEcc---cccccccCchheEEECCEEEEEeccccCC
Confidence 6899999999999988 565 6899999999999999999986644
No 21
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=3e-33 Score=264.07 Aligned_cols=254 Identities=29% Similarity=0.557 Sum_probs=211.7
Q ss_pred CCCCCCcceeEEEE-CCcEEEEEcccC--C--CccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEEC-CE
Q 011542 15 TVPQPRSGHSAVNI-GKSKVVVFGGLV--D--KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAID-CH 88 (483)
Q Consensus 15 ~~p~~R~~h~~~~~-~~~~l~v~GG~~--~--~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~-~~ 88 (483)
+.|.||.+.++++. ..+-+++|||.. + ....+|++.||+.+++|..+.. +..|.||+.|.+|++. |.
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~s-------pn~P~pRsshq~va~~s~~ 134 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVS-------PNAPPPRSSHQAVAVPSNI 134 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEecc-------CCCcCCCccceeEEeccCe
Confidence 57889999999884 334699999953 2 2457899999999999999874 4679999999999986 89
Q ss_pred EEEEccccCC------CCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCC----cCCccEEEE
Q 011542 89 MFIFGGRFGS------RRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK----KWLSDVYVL 158 (483)
Q Consensus 89 iyv~GG~~~~------~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~----~~~~~v~~y 158 (483)
+|||||.-.. -...|+|+||..+++|.++...| .|.+|++|-|++... +|++|||+-.. .++|+||+|
T Consensus 135 l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~-~lilFGGFhd~nr~y~YyNDvy~F 212 (521)
T KOG1230|consen 135 LWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKR-QLILFGGFHDSNRDYIYYNDVYAF 212 (521)
T ss_pred EEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeee-eEEEEcceecCCCceEEeeeeEEE
Confidence 9999997431 13679999999999999998744 899999999999966 99999997543 478999999
Q ss_pred ECCCCceEEeccCCCCCCCCcCceEEEe-CCEEEEEccCCC--------CCCcccceecccccccccCCC-----CCeEE
Q 011542 159 DTISLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGG--------GGPIMGDLWALKGLIEEENET-----PGWTQ 224 (483)
Q Consensus 159 d~~t~~W~~i~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~--------~~~~~~d~~~l~~~~~yd~~~-----~~W~~ 224 (483)
|+.|.+|+++.+.|.-|.||++|++.+. .+.|||+||+.. .+...+|+|.| +++. -.|+.
T Consensus 213 dLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L------~p~~~~~dKw~W~k 286 (521)
T KOG1230|consen 213 DLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLL------KPEDGREDKWVWTK 286 (521)
T ss_pred eccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeee------cCCcCCCcceeEee
Confidence 9999999999998889999999999998 899999999864 44567788877 6665 78999
Q ss_pred eccCCCCCCCCeeeEEEEeC-CEEEEEcCCCCCC--CCcccceeeCcEEEEEcCCCceEEcc
Q 011542 225 LKLPGQAPSSRCGHTITSGG-HYLLLFGGHGTGG--WLSRYDIYYNDTIILDRLSAQWKRLP 283 (483)
Q Consensus 225 ~~~~g~~p~~r~~~~~~~~~-~~i~v~GG~~~~~--~~~~~~~~~~~v~~yd~~~~~W~~v~ 283 (483)
+...|..|.||.++++++.. ++.+.|||..+-. ...-...+.|++|.||++.++|....
T Consensus 287 vkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~q 348 (521)
T KOG1230|consen 287 VKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQ 348 (521)
T ss_pred ccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhh
Confidence 99989999999999999864 5999999986511 11122358899999999999998763
No 22
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=4.5e-32 Score=280.86 Aligned_cols=211 Identities=16% Similarity=0.233 Sum_probs=183.7
Q ss_pred EEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECC
Q 011542 82 AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI 161 (483)
Q Consensus 82 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 161 (483)
.+..++.||++||.++....+++++||+.+++|..+++ ||.+|..++++++++ +||++||.++ .+++++||+.
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~---m~~~r~~~~~v~~~~-~iYviGG~~~---~~sve~ydp~ 339 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPP---MNSPRLYASGVPANN-KLYVVGGLPN---PTSVERWFHG 339 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCC---CCchhhcceEEEECC-EEEEECCcCC---CCceEEEECC
Confidence 34589999999998776677889999999999999986 999999999988865 9999999754 2679999999
Q ss_pred CCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEE
Q 011542 162 SLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTIT 241 (483)
Q Consensus 162 t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~ 241 (483)
+++|+.++ +||.+|.+|+++.++++||++||.... .+.+++|||.+++|+.++ ++|.+|..|+++
T Consensus 340 ~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~---------~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~ 404 (480)
T PHA02790 340 DAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET---------DTTTEYLLPNHDQWQFGP---STYYPHYKSCAL 404 (480)
T ss_pred CCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC---------CccEEEEeCCCCEEEeCC---CCCCccccceEE
Confidence 99999998 999999999999999999999997532 256788999999999988 789999999999
Q ss_pred EeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEccCCCCCccCcEEE
Q 011542 242 SGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWW 321 (483)
Q Consensus 242 ~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~~~~~~d~w~ 321 (483)
+.+++||++||. +.+||+.+++|+.++++ |.+|..+++++++++|||+||.++...++.
T Consensus 405 ~~~~~IYv~GG~---------------~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~~~~IYviGG~~~~~~~~~--- 463 (480)
T PHA02790 405 VFGRRLFLVGRN---------------AEFYCESSNTWTLIDDP---IYPRDNPELIIVDNKLLLIGGFYRGSYIDT--- 463 (480)
T ss_pred EECCEEEEECCc---------------eEEecCCCCcEeEcCCC---CCCccccEEEEECCEEEEECCcCCCcccce---
Confidence 999999999983 46799999999999875 558999999999999999999876544444
Q ss_pred EcCCCCcccceeecC
Q 011542 322 LVPEEDPIAKRYTES 336 (483)
Q Consensus 322 l~~~~d~~~~~w~~~ 336 (483)
.+.||+.+++|+..
T Consensus 464 -ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 464 -IEVYNNRTYSWNIW 477 (480)
T ss_pred -EEEEECCCCeEEec
Confidence 45788889999765
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.3e-31 Score=269.78 Aligned_cols=248 Identities=24% Similarity=0.295 Sum_probs=190.7
Q ss_pred ceEEceeCCCCCCCC-CCCcceeEEEECCcEEEEEcccCC------CccccceEEEEcCCCcEEeeeecCCCCCCCCCCC
Q 011542 3 YWVRASSSDFGGTVP-QPRSGHSAVNIGKSKVVVFGGLVD------KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPG 75 (483)
Q Consensus 3 ~W~~~~~~~~~g~~p-~~R~~h~~~~~~~~~l~v~GG~~~------~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~ 75 (483)
+|.+++ ++| .+|.+|++++++ ++|||+||... ...++++|+||+.+++|..++. ..|.
T Consensus 63 ~W~~l~------~~p~~~r~~~~~v~~~-~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--------~~p~ 127 (376)
T PRK14131 63 GWTKIA------AFPGGPREQAVAAFID-GKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--------RSPV 127 (376)
T ss_pred CeEECC------cCCCCCcccceEEEEC-CEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--------CCCC
Confidence 588886 466 489999988887 69999999864 1346899999999999999862 1367
Q ss_pred CcceeEEEE-ECCEEEEEccccCC----------------------------------CCCccEEEEECCCCeEEEeecC
Q 011542 76 PRAFHIAVA-IDCHMFIFGGRFGS----------------------------------RRLGDFWVLDTDIWQWSELTSF 120 (483)
Q Consensus 76 ~R~~h~~~~-~~~~iyv~GG~~~~----------------------------------~~~~~~~~yd~~t~~W~~l~~~ 120 (483)
+|.+|++++ .+++||++||.... ...+++++||+.+++|+.+++
T Consensus 128 ~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~- 206 (376)
T PRK14131 128 GLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE- 206 (376)
T ss_pred cccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc-
Confidence 778888877 79999999997531 124789999999999999875
Q ss_pred CCCCC-CCcccEEEEECCcEEEEEecCCCCc-CCccEE--EEECCCCceEEeccCCCCCCCCcC--------ceEEEeCC
Q 011542 121 GDLPS-PRDFAAASAIGNRKIVMYGGWDGKK-WLSDVY--VLDTISLEWMQLPVTGSVPPPRCG--------HTATMVEK 188 (483)
Q Consensus 121 ~~~p~-~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~--~yd~~t~~W~~i~~~~~~p~~r~~--------~~~~~~~~ 188 (483)
+|. +|..++++++++ +|||+||..... ...+++ .||+.+++|+.++ ++|.+|.+ +.++.+++
T Consensus 207 --~p~~~~~~~a~v~~~~-~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~~ 280 (376)
T PRK14131 207 --SPFLGTAGSAVVIKGN-KLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP---DLPPAPGGSSQEGVAGAFAGYSNG 280 (376)
T ss_pred --CCCCCCCcceEEEECC-EEEEEeeeECCCcCChhheEEEecCCCcceeecC---CCCCCCcCCcCCccceEeceeECC
Confidence 775 677888877765 999999975432 334444 4577899999998 78777642 33566799
Q ss_pred EEEEEccCCCCCCcc----------cceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCC
Q 011542 189 RLLIYGGRGGGGPIM----------GDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGW 258 (483)
Q Consensus 189 ~lyv~GG~~~~~~~~----------~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 258 (483)
+|||+||........ ..+.....+++||+++++|+.+. .+|.+|..++++..+++|||+||....+
T Consensus 281 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~---~lp~~r~~~~av~~~~~iyv~GG~~~~~- 356 (376)
T PRK14131 281 VLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG---ELPQGLAYGVSVSWNNGVLLIGGETAGG- 356 (376)
T ss_pred EEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC---cCCCCccceEEEEeCCEEEEEcCCCCCC-
Confidence 999999976422100 00111235789999999999887 8899999999999999999999986543
Q ss_pred CcccceeeCcEEEEEcCCCceEE
Q 011542 259 LSRYDIYYNDTIILDRLSAQWKR 281 (483)
Q Consensus 259 ~~~~~~~~~~v~~yd~~~~~W~~ 281 (483)
...+++++|++..+.+..
T Consensus 357 -----~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 357 -----KAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred -----cEeeeEEEEEEcCCEEEE
Confidence 367899999998877754
No 24
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.2e-31 Score=267.76 Aligned_cols=240 Identities=24% Similarity=0.333 Sum_probs=185.5
Q ss_pred ceEEceeCCCCCCCC-CCCcceeEEEECCcEEEEEcccCCC------ccccceEEEEcCCCcEEeeeecCCCCCCCCCCC
Q 011542 3 YWVRASSSDFGGTVP-QPRSGHSAVNIGKSKVVVFGGLVDK------RFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPG 75 (483)
Q Consensus 3 ~W~~~~~~~~~g~~p-~~R~~h~~~~~~~~~l~v~GG~~~~------~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~ 75 (483)
+|.+++ ++| .+|.+|++++++ ++|||+||.... ..++++++||+.+++|+.++. ++|.
T Consensus 42 ~W~~l~------~~p~~~R~~~~~~~~~-~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--------~~p~ 106 (346)
T TIGR03547 42 GWQKIA------DFPGGPRNQAVAAAID-GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--------RSPV 106 (346)
T ss_pred CceECC------CCCCCCcccceEEEEC-CEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC--------CCCC
Confidence 688887 678 589999999887 699999998532 246899999999999999852 2467
Q ss_pred CcceeEEE-EECCEEEEEccccCCC----------------------------------CCccEEEEECCCCeEEEeecC
Q 011542 76 PRAFHIAV-AIDCHMFIFGGRFGSR----------------------------------RLGDFWVLDTDIWQWSELTSF 120 (483)
Q Consensus 76 ~R~~h~~~-~~~~~iyv~GG~~~~~----------------------------------~~~~~~~yd~~t~~W~~l~~~ 120 (483)
+|.+|+++ +++++||++||.+... .++++++||+.+++|+.+++
T Consensus 107 ~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~- 185 (346)
T TIGR03547 107 GLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGE- 185 (346)
T ss_pred cccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECcc-
Confidence 78888777 6899999999986321 14789999999999999975
Q ss_pred CCCCC-CCcccEEEEECCcEEEEEecCCCCc-CCccEEEEE--CCCCceEEeccCCCCCCCC-------cCceEEEeCCE
Q 011542 121 GDLPS-PRDFAAASAIGNRKIVMYGGWDGKK-WLSDVYVLD--TISLEWMQLPVTGSVPPPR-------CGHTATMVEKR 189 (483)
Q Consensus 121 ~~~p~-~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd--~~t~~W~~i~~~~~~p~~r-------~~~~~~~~~~~ 189 (483)
+|. +|..++++++++ +|||+||..... ....++.|+ +.+++|+.++ +||.+| .+|+++.++++
T Consensus 186 --~p~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~---~m~~~r~~~~~~~~~~~a~~~~~~ 259 (346)
T TIGR03547 186 --NPFLGTAGSAIVHKGN-KLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLP---PLPPPKSSSQEGLAGAFAGISNGV 259 (346)
T ss_pred --CCCCcCCCceEEEECC-EEEEEeeeeCCCccchheEEEEecCCCceeeecC---CCCCCCCCccccccEEeeeEECCE
Confidence 775 688888888865 999999986443 234566665 5778999998 777665 35557788999
Q ss_pred EEEEccCCCCCC---------ccc-ceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCC
Q 011542 190 LLIYGGRGGGGP---------IMG-DLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWL 259 (483)
Q Consensus 190 lyv~GG~~~~~~---------~~~-d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~ 259 (483)
|||+||...... ... ....+..+++||+++++|+.+. ++|.+|..+++++.+++|||+||.+..+
T Consensus 260 Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~---~lp~~~~~~~~~~~~~~iyv~GG~~~~~-- 334 (346)
T TIGR03547 260 LLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG---KLPQGLAYGVSVSWNNGVLLIGGENSGG-- 334 (346)
T ss_pred EEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC---CCCCCceeeEEEEcCCEEEEEeccCCCC--
Confidence 999999863211 000 0112346889999999999998 7899999999889999999999987654
Q ss_pred cccceeeCcEEEEE
Q 011542 260 SRYDIYYNDTIILD 273 (483)
Q Consensus 260 ~~~~~~~~~v~~yd 273 (483)
...++++.|.
T Consensus 335 ----~~~~~v~~~~ 344 (346)
T TIGR03547 335 ----KAVTDVYLLS 344 (346)
T ss_pred ----CEeeeEEEEE
Confidence 4567777664
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.97 E-value=1.2e-30 Score=246.60 Aligned_cols=257 Identities=22% Similarity=0.425 Sum_probs=207.8
Q ss_pred CCCCCCcceeEEEEE--CCEEEEEccc--cC--CCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEe
Q 011542 71 QVGPGPRAFHIAVAI--DCHMFIFGGR--FG--SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYG 144 (483)
Q Consensus 71 ~~~p~~R~~h~~~~~--~~~iyv~GG~--~~--~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~G 144 (483)
.++|.||+.+++++. .+.|++|||. ++ ....|++|.||+.++.|+++.+ ...|.+|+.|+++++..+.+|+||
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~s-pn~P~pRsshq~va~~s~~l~~fG 139 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVS-PNAPPPRSSHQAVAVPSNILWLFG 139 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEecc-CCCcCCCccceeEEeccCeEEEec
Confidence 367999999999886 5689999996 33 2347999999999999999875 347899999999999877999999
Q ss_pred cCCCC------cCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCC
Q 011542 145 GWDGK------KWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENE 218 (483)
Q Consensus 145 G~~~~------~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~ 218 (483)
|--.. ....++|.||+.|++|+++...| .|.+|.+|-|+...++|++|||+.... .+...+|.+++||++
T Consensus 140 GEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~n---r~y~YyNDvy~FdLd 215 (521)
T KOG1230|consen 140 GEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSN---RDYIYYNDVYAFDLD 215 (521)
T ss_pred cccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCC---CceEEeeeeEEEecc
Confidence 95322 24689999999999999998655 899999999999999999999987642 344455666667999
Q ss_pred CCCeEEeccCCCCCCCCeeeEEEEe-CCEEEEEcCCCCCCCCc--ccceeeCcEEEEEcCC-----CceEEccCCCCCCC
Q 011542 219 TPGWTQLKLPGQAPSSRCGHTITSG-GHYLLLFGGHGTGGWLS--RYDIYYNDTIILDRLS-----AQWKRLPIGNEPPP 290 (483)
Q Consensus 219 ~~~W~~~~~~g~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~--~~~~~~~~v~~yd~~~-----~~W~~v~~~~~~p~ 290 (483)
+-+|+.+.++|.-|.||.+|.+.+. .+.|||+||++.....+ ......+++|.+++.. -.|+++.+.+..|.
T Consensus 216 tykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPs 295 (521)
T KOG1230|consen 216 TYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPS 295 (521)
T ss_pred ceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCC
Confidence 9999999998889999999999987 89999999987532111 1234789999999988 67999999988999
Q ss_pred CCcceEEEEEC-CEEEEEccCCC---------CCccCcEEEEcCCCCcccceeecC
Q 011542 291 ARAYHSMTCLG-SLYLLFGGFDG---------KSTFGDIWWLVPEEDPIAKRYTES 336 (483)
Q Consensus 291 ~R~~~~~~~~~-~~i~v~GG~~~---------~~~~~d~w~l~~~~d~~~~~w~~~ 336 (483)
||.++++++.. ++-|.|||... ...++|++.|++. .++|+..
T Consensus 296 pRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt----~nrW~~~ 347 (521)
T KOG1230|consen 296 PRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLT----RNRWSEG 347 (521)
T ss_pred CCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecc----cchhhHh
Confidence 99999999885 59999999654 1246777655554 5566544
No 26
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.97 E-value=2.3e-32 Score=263.18 Aligned_cols=373 Identities=21% Similarity=0.290 Sum_probs=267.1
Q ss_pred cceEEceeCCCCC----CCCCCCcceeEEE-ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCC
Q 011542 2 HYWVRASSSDFGG----TVPQPRSGHSAVN-IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGP 76 (483)
Q Consensus 2 ~~W~~~~~~~~~g----~~p~~R~~h~~~~-~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~ 76 (483)
..|.++.+++..| ..|.+|+||+||. .+++.||++|||++.+.+.|+|.|+...+.|+.+..-+ ..|.+
T Consensus 239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t------~~PG~ 312 (723)
T KOG2437|consen 239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDT------EGPGA 312 (723)
T ss_pred ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCC------CCCcc
Confidence 3699999887554 5789999999998 56679999999999999999999999999999987554 36899
Q ss_pred cceeEEEEECC--EEEEEccccCC------CCCccEEEEECCCCeEEEeec---CCCCCCCCcccEEEEECC-cEEEEEe
Q 011542 77 RAFHIAVAIDC--HMFIFGGRFGS------RRLGDFWVLDTDIWQWSELTS---FGDLPSPRDFAAASAIGN-RKIVMYG 144 (483)
Q Consensus 77 R~~h~~~~~~~--~iyv~GG~~~~------~~~~~~~~yd~~t~~W~~l~~---~~~~p~~r~~~~~~~~~~-~~iyv~G 144 (483)
|++|-||+.-. ++|++|-+-+. ..-+|+|+||+.++.|..+.. ..+.|...+.|+|++.++ +.|||||
T Consensus 313 RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfG 392 (723)
T KOG2437|consen 313 RSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFG 392 (723)
T ss_pred hhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEec
Confidence 99999999855 99999988542 234689999999999998864 335889999999999976 2499999
Q ss_pred cCCCC---cCCccEEEEECCCCceEEeccC----C---CCCCCCcCceEEEe--CCEEEEEccCCCCCCcccceeccccc
Q 011542 145 GWDGK---KWLSDVYVLDTISLEWMQLPVT----G---SVPPPRCGHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGL 212 (483)
Q Consensus 145 G~~~~---~~~~~v~~yd~~t~~W~~i~~~----~---~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~ 212 (483)
|+.-. ..+..+|.||.....|..+... + .-...|.+|+|-.+ ++.+|++||...+. .++.+
T Consensus 393 Gr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~-------El~L~ 465 (723)
T KOG2437|consen 393 GRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKT-------ELNLF 465 (723)
T ss_pred CeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccce-------EEeeh
Confidence 97532 4578899999999999987632 1 12346788888777 56999999987765 35666
Q ss_pred ccccCCCCCeEEec-----cCCCCCCCCeeeEEEE--eCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCC
Q 011542 213 IEEENETPGWTQLK-----LPGQAPSSRCGHTITS--GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIG 285 (483)
Q Consensus 213 ~~yd~~~~~W~~~~-----~~g~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~ 285 (483)
..||+...+=..+. .....|.+.....++. ..+.|.+.-|.+... ..++....+++|+|++.++.|.++...
T Consensus 466 f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~-~~~e~~~rns~wi~~i~~~~w~cI~~I 544 (723)
T KOG2437|consen 466 FSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDK-EKREENVRNSFWIYDIVRNSWSCIYKI 544 (723)
T ss_pred hcceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhc-cCccccccCcEEEEEecccchhhHhhh
Confidence 77766544333222 0112344433333332 567899888887654 223345789999999999999987432
Q ss_pred C---------------------CCCCCCcceEEEEE--CCEEEEEccCCCCC-----ccCcEEEEcCCCCcccceeecCC
Q 011542 286 N---------------------EPPPARAYHSMTCL--GSLYLLFGGFDGKS-----TFGDIWWLVPEEDPIAKRYTESP 337 (483)
Q Consensus 286 ~---------------------~~p~~R~~~~~~~~--~~~i~v~GG~~~~~-----~~~d~w~l~~~~d~~~~~w~~~~ 337 (483)
. ..|++|++|+.++. .+-+|++||+.+.. .++|+|.+++.......-.+.+
T Consensus 545 ~~~~~d~dtvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I~rp~~~~~l~~~- 623 (723)
T KOG2437|consen 545 DQAAKDNDTVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPGKSCSPKMRLDDFWSLKICRPSKDYLLRHC- 623 (723)
T ss_pred HHhhccCCceeeccCCcccccceeccccchhHHHHHHhhhhhhhhcCCCCCCCCchhhhhhHHHHhhcccchhhhhhcc-
Confidence 1 13789999987763 57789999988754 4678998887744444434433
Q ss_pred CCCCCCCCcccccccccceecccccccchhHhhhhhhcCceeeecCCcccccCccchHHHHHHHHhHhc
Q 011542 338 PKVLPENKDVGMENYNSQFAVKESQRESSAIVELQKKLDISVSLSRPGLQIMDELEDEEFLELASRLMG 406 (483)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~ 406 (483)
+ ....+..+.+++-...+++.. .+|+ +.....+.+ +...++|++.+|+.|+.
T Consensus 624 --~-----~~~~~HrF~E~~~~~~l~a~~---ylq~--~~~~~~D~s-----~~~~~~e~~lla~~l~~ 675 (723)
T KOG2437|consen 624 --K-----YLIRKHRFEEKAQVDPLSALK---YLQN--DLYITVDHS-----DPEETKEFQLLASALFK 675 (723)
T ss_pred --h-----hhhHHHHHHHHhhhhhHHHhH---hhhh--cceeccccC-----chhhhHHHHHHHHHHHh
Confidence 2 222223333444333444443 3443 344444555 55667899999999886
No 27
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.4e-29 Score=242.81 Aligned_cols=242 Identities=26% Similarity=0.411 Sum_probs=201.9
Q ss_pred CCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEE
Q 011542 55 NKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASA 134 (483)
Q Consensus 55 ~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~ 134 (483)
.-+|+.+.... .+.|.||-+|-++++..-|.+|||-+. ...+++++||..+++|......|++|.+...|..+.
T Consensus 16 ~~rWrrV~~~t-----GPvPrpRHGHRAVaikELiviFGGGNE-GiiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfvc 89 (830)
T KOG4152|consen 16 VVRWRRVQQST-----GPVPRPRHGHRAVAIKELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVC 89 (830)
T ss_pred ccceEEEeccc-----CCCCCccccchheeeeeeEEEecCCcc-cchhhhhhhccccceeecchhcCCCCCchhhcceEe
Confidence 34799988764 367889999999999999999999765 457889999999999999888899999999999988
Q ss_pred ECCcEEEEEecCCCC-cCCccEEEEECCCCceEEecc----CCCCCCCCcCceEEEeCCEEEEEccCCCCCC--ccccee
Q 011542 135 IGNRKIVMYGGWDGK-KWLSDVYVLDTISLEWMQLPV----TGSVPPPRCGHTATMVEKRLLIYGGRGGGGP--IMGDLW 207 (483)
Q Consensus 135 ~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~i~~----~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~--~~~d~~ 207 (483)
.++ +||+|||.-.. .+.|++|.+-...-.|+++.+ .|.+|.||-+|+..+++++.|+|||...+.. -.|-..
T Consensus 90 dGt-rilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPr 168 (830)
T KOG4152|consen 90 DGT-RILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPR 168 (830)
T ss_pred cCc-eEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccch
Confidence 877 99999997654 578998888777778888864 4788999999999999999999999754322 111123
Q ss_pred cccccccccCC----CCCeEEeccCCCCCCCCeeeEEEEe------CCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCC
Q 011542 208 ALKGLIEEENE----TPGWTQLKLPGQAPSSRCGHTITSG------GHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSA 277 (483)
Q Consensus 208 ~l~~~~~yd~~----~~~W~~~~~~g~~p~~r~~~~~~~~------~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 277 (483)
.|+++++.++. .-.|+...+.|..|++|..|+++++ ..++||+||.+. ....|+|.+|+++.
T Consensus 169 YLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G--------~RLgDLW~Ldl~Tl 240 (830)
T KOG4152|consen 169 YLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG--------CRLGDLWTLDLDTL 240 (830)
T ss_pred hhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc--------ccccceeEEeccee
Confidence 34444444554 2359998889999999999999986 348999999986 46899999999999
Q ss_pred ceEEccCCCCCCCCCcceEEEEECCEEEEEccCC
Q 011542 278 QWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFD 311 (483)
Q Consensus 278 ~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~ 311 (483)
.|.+....+.+|-||..|+++.+++++|||||+-
T Consensus 241 ~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWV 274 (830)
T KOG4152|consen 241 TWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWV 274 (830)
T ss_pred ecccccccCCCCCCcccccceeecceeEEeccee
Confidence 9999988888899999999999999999999975
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.77 E-value=3.4e-17 Score=153.92 Aligned_cols=277 Identities=20% Similarity=0.301 Sum_probs=196.1
Q ss_pred CCCCCCcceeEEEECCcEEEEEcccCCCccccceEEEEcCC--CcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEE
Q 011542 15 TVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDN--KLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIF 92 (483)
Q Consensus 15 ~~p~~R~~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~ 92 (483)
++|.+-.+-+-+.+++ .+||-=|..+ .+++..|... ..|+.++.. +-.+|....+++++++||+|
T Consensus 32 dlPvg~KnG~Ga~ig~-~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~F--------pG~~rnqa~~a~~~~kLyvF 98 (381)
T COG3055 32 DLPVGFKNGAGALIGD-TVYVGLGSAG----TAFYVLDLKKPGKGWTKIADF--------PGGARNQAVAAVIGGKLYVF 98 (381)
T ss_pred CCCccccccccceecc-eEEEEeccCC----ccceehhhhcCCCCceEcccC--------CCcccccchheeeCCeEEEe
Confidence 4566655556667775 8888666433 3567777664 589999865 35689999999999999999
Q ss_pred ccccC-----CCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCC-------------------
Q 011542 93 GGRFG-----SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDG------------------- 148 (483)
Q Consensus 93 GG~~~-----~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~------------------- 148 (483)
||... ...++++|+|||.+++|.++.+ ..|.....+.++...+.+||++||.+.
T Consensus 99 gG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~ 176 (381)
T COG3055 99 GGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEA 176 (381)
T ss_pred eccccCCCCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHH
Confidence 99854 2347899999999999999986 467777888888887779999999431
Q ss_pred ---------------CcCCccEEEEECCCCceEEeccCCCCC-CCCcCceEEEeCCEEEEEccCCCCCCcccceeccccc
Q 011542 149 ---------------KKWLSDVYVLDTISLEWMQLPVTGSVP-PPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGL 212 (483)
Q Consensus 149 ---------------~~~~~~v~~yd~~t~~W~~i~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~ 212 (483)
..+...+..|++.+++|+.+- ..| .++++.+.+.-++++.++-|.-..+......+..
T Consensus 177 ~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G---~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~--- 250 (381)
T COG3055 177 VDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLG---ENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQA--- 250 (381)
T ss_pred HHHHHHHHhCCCHHHhcccccccccccccchhhhcC---cCcccCccCcceeecCCeEEEEcceecCCccccceeEE---
Confidence 113566899999999999875 344 5677755555578899999876554322222211
Q ss_pred ccccCCCCCeEEeccCCCCCCCC-------eeeEEEEeCCEEEEEcCCCCCCCC------------cccceeeCcEEEEE
Q 011542 213 IEEENETPGWTQLKLPGQAPSSR-------CGHTITSGGHYLLLFGGHGTGGWL------------SRYDIYYNDTIILD 273 (483)
Q Consensus 213 ~~yd~~~~~W~~~~~~g~~p~~r-------~~~~~~~~~~~i~v~GG~~~~~~~------------~~~~~~~~~v~~yd 273 (483)
.+.-+..+|..+. +.|.+. .++-.-..++.+.+.||..-.+.. .....+.++||.+|
T Consensus 251 -~~~~~~~~w~~l~---~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d 326 (381)
T COG3055 251 -DFGGDNLKWLKLS---DLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD 326 (381)
T ss_pred -EeccCceeeeecc---CCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc
Confidence 2234567898886 333332 333333478899999986532211 12345778999999
Q ss_pred cCCCceEEccCCCCCCCCCcceEEEEECCEEEEEccCCCC-CccCcEEE
Q 011542 274 RLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGK-STFGDIWW 321 (483)
Q Consensus 274 ~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~~-~~~~d~w~ 321 (483)
.+.|+.+..+ |.++.+-.++..++.+|++||.+.. ....++..
T Consensus 327 --~g~Wk~~GeL---p~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~ 370 (381)
T COG3055 327 --NGSWKIVGEL---PQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYS 370 (381)
T ss_pred --CCceeeeccc---CCCccceEEEecCCcEEEEccccCCCeeeeeEEE
Confidence 8999999885 4478888888899999999997643 34555543
No 29
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.72 E-value=5.8e-16 Score=145.71 Aligned_cols=241 Identities=22% Similarity=0.349 Sum_probs=170.5
Q ss_pred ceEEceeCCCCCCCCCCCcceeEEEECCcEEEEEcccCC-----CccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCc
Q 011542 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVD-----KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPR 77 (483)
Q Consensus 3 ~W~~~~~~~~~g~~p~~R~~h~~~~~~~~~l~v~GG~~~-----~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R 77 (483)
.|++++ +|+| .+|-+..+++++ ++||+|||... .+..+|+++|||.+++|.++.+. .|..-
T Consensus 71 ~W~~~a--~FpG---~~rnqa~~a~~~-~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~--------sP~gl 136 (381)
T COG3055 71 GWTKIA--DFPG---GARNQAVAAVIG-GKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR--------SPTGL 136 (381)
T ss_pred CceEcc--cCCC---cccccchheeeC-CeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccc--------ccccc
Confidence 599998 4544 579998888888 69999999853 35678999999999999999764 46667
Q ss_pred ceeEEEEECC-EEEEEccccCC----------------------------------CCCccEEEEECCCCeEEEeecCCC
Q 011542 78 AFHIAVAIDC-HMFIFGGRFGS----------------------------------RRLGDFWVLDTDIWQWSELTSFGD 122 (483)
Q Consensus 78 ~~h~~~~~~~-~iyv~GG~~~~----------------------------------~~~~~~~~yd~~t~~W~~l~~~~~ 122 (483)
.+++++..++ +||++||++.. .....++.|+|.+++|+.+-.
T Consensus 137 ~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~--- 213 (381)
T COG3055 137 VGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE--- 213 (381)
T ss_pred ccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCc---
Confidence 8999999987 99999998421 113468899999999988763
Q ss_pred CCC-CCcccEEEEECCcEEEEEecCCCC-cCCccEEEEEC--CCCceEEeccCCCCCCCC-------cCceEEEeCCEEE
Q 011542 123 LPS-PRDFAAASAIGNRKIVMYGGWDGK-KWLSDVYVLDT--ISLEWMQLPVTGSVPPPR-------CGHTATMVEKRLL 191 (483)
Q Consensus 123 ~p~-~r~~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~--~t~~W~~i~~~~~~p~~r-------~~~~~~~~~~~ly 191 (483)
.|- ++.+ ++++++++++.++-|.--+ -....+..++. ...+|..++ ++|.+. .++-.-..++.+.
T Consensus 214 ~pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~---~lp~~~~~~~eGvAGaf~G~s~~~~l 289 (381)
T COG3055 214 NPFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLS---DLPAPIGSNKEGVAGAFSGKSNGEVL 289 (381)
T ss_pred CcccCccC-cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeecc---CCCCCCCCCccccceeccceeCCeEE
Confidence 444 4444 5556666688888886433 23445566555 467899996 444333 3333334478999
Q ss_pred EEccCCCCCC--------cc-----cceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCC
Q 011542 192 IYGGRGGGGP--------IM-----GDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGW 258 (483)
Q Consensus 192 v~GG~~~~~~--------~~-----~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 258 (483)
|.||..-.+. .+ .--|. ++++.+| .+.|..+- .+|.++..-+++..++.+|++||.+..+
T Consensus 290 v~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~-~~Vy~~d--~g~Wk~~G---eLp~~l~YG~s~~~nn~vl~IGGE~~~G- 362 (381)
T COG3055 290 VAGGANFPGALKAYKNGKFYAHEGLSKSWN-SEVYIFD--NGSWKIVG---ELPQGLAYGVSLSYNNKVLLIGGETSGG- 362 (381)
T ss_pred EecCCCChhHHHHHHhcccccccchhhhhh-ceEEEEc--CCceeeec---ccCCCccceEEEecCCcEEEEccccCCC-
Confidence 9999764221 10 11121 3444445 89999887 8999998888889999999999998876
Q ss_pred CcccceeeCcEEEEEcCC
Q 011542 259 LSRYDIYYNDTIILDRLS 276 (483)
Q Consensus 259 ~~~~~~~~~~v~~yd~~~ 276 (483)
....+++.+....
T Consensus 363 -----ka~~~v~~l~~~g 375 (381)
T COG3055 363 -----KATTRVYSLSWDG 375 (381)
T ss_pred -----eeeeeEEEEEEcC
Confidence 4455565554433
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.58 E-value=1.6e-15 Score=147.52 Aligned_cols=203 Identities=18% Similarity=0.269 Sum_probs=154.5
Q ss_pred CCCeEEEeecCC-------CCCCCCcccEEEEE-CCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCc
Q 011542 110 DIWQWSELTSFG-------DLPSPRDFAAASAI-GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGH 181 (483)
Q Consensus 110 ~t~~W~~l~~~~-------~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~ 181 (483)
-+-.|.+++++. ..|..|.+|+|+.. ++++||++||+++...+.|+|.|+...+.|+.+...+..|..|..|
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCH 316 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCH 316 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhh
Confidence 355799887654 47889999999985 5569999999999999999999999999999998888899999999
Q ss_pred eEEEeC--CEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCC---CCCCCCeeeEEEEeCCE--EEEEcCCC
Q 011542 182 TATMVE--KRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPG---QAPSSRCGHTITSGGHY--LLLFGGHG 254 (483)
Q Consensus 182 ~~~~~~--~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g---~~p~~r~~~~~~~~~~~--i~v~GG~~ 254 (483)
-|+... .+||+.|-+-+.... +..-.-+.++.||.+++.|..++-.. .-|...+.|.+++.+++ +|||||..
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r-~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVR-NSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccc-cccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 999984 499999976543211 00111245666799999999887432 24788899999998887 99999986
Q ss_pred CCCCCcccceeeCcEEEEEcCCCceEEccCCCC-------CCCCCcceEEEEE--CCEEEEEccCCCCCccC
Q 011542 255 TGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNE-------PPPARAYHSMTCL--GSLYLLFGGFDGKSTFG 317 (483)
Q Consensus 255 ~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~-------~p~~R~~~~~~~~--~~~i~v~GG~~~~~~~~ 317 (483)
-.. .+.....+|.||.....|..+..... .-..|.+|+|-.. ++.+|+|||......++
T Consensus 396 ~~~----~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~ 463 (723)
T KOG2437|consen 396 LTC----NEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELN 463 (723)
T ss_pred ccC----CCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEe
Confidence 432 12356789999999999987643210 1236778877654 57899999976655443
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.21 E-value=3.2e-11 Score=84.11 Aligned_cols=49 Identities=31% Similarity=0.599 Sum_probs=45.4
Q ss_pred CcceeEEEEECCEEEEEccccC-CCCCccEEEEECCCCeEEEeecCCCCCCCC
Q 011542 76 PRAFHIAVAIDCHMFIFGGRFG-SRRLGDFWVLDTDIWQWSELTSFGDLPSPR 127 (483)
Q Consensus 76 ~R~~h~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r 127 (483)
||.+|++++++++|||+||... ...++++++||+.+++|+++++ ||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~---mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPP---MPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCC---CCCCC
Confidence 6899999999999999999988 7889999999999999999985 88876
No 32
>PF13964 Kelch_6: Kelch motif
Probab=99.11 E-value=2.1e-10 Score=79.94 Aligned_cols=49 Identities=41% Similarity=0.740 Sum_probs=44.9
Q ss_pred CCcccEEEEECCcEEEEEecCCC-CcCCccEEEEECCCCceEEeccCCCCCCCC
Q 011542 126 PRDFAAASAIGNRKIVMYGGWDG-KKWLSDVYVLDTISLEWMQLPVTGSVPPPR 178 (483)
Q Consensus 126 ~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r 178 (483)
+|..|+++++++ +|||+||... ....+++++||+.|++|++++ +||.+|
T Consensus 1 pR~~~s~v~~~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGG-KIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECC-EEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 588999999976 9999999988 678999999999999999998 899887
No 33
>PLN02772 guanylate kinase
Probab=99.01 E-value=2.5e-09 Score=105.15 Aligned_cols=89 Identities=17% Similarity=0.257 Sum_probs=78.1
Q ss_pred CCCCcceeEEEEECCEEEEEccccCCC-CCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcC
Q 011542 73 GPGPRAFHIAVAIDCHMFIFGGRFGSR-RLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKW 151 (483)
Q Consensus 73 ~p~~R~~h~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~ 151 (483)
.+.++.+|+++.+++++|||||.++.. ..+.+++||+.|++|...+..|..|.+|.+|++|++++.+|+|+++-.+.
T Consensus 21 ~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~-- 98 (398)
T PLN02772 21 GVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP-- 98 (398)
T ss_pred cCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC--
Confidence 466899999999999999999988754 67899999999999999998899999999999999988899999975443
Q ss_pred CccEEEEECCCC
Q 011542 152 LSDVYVLDTISL 163 (483)
Q Consensus 152 ~~~v~~yd~~t~ 163 (483)
-.++|.+.+.|.
T Consensus 99 ~~~~w~l~~~t~ 110 (398)
T PLN02772 99 DDSIWFLEVDTP 110 (398)
T ss_pred ccceEEEEcCCH
Confidence 377888888764
No 34
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.93 E-value=2e-09 Score=73.92 Aligned_cols=44 Identities=30% Similarity=0.551 Sum_probs=40.7
Q ss_pred CcceeEEEEECCEEEEEccccC-CCCCccEEEEECCCCeEEEeec
Q 011542 76 PRAFHIAVAIDCHMFIFGGRFG-SRRLGDFWVLDTDIWQWSELTS 119 (483)
Q Consensus 76 ~R~~h~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~t~~W~~l~~ 119 (483)
||.+|++++++++||++||.+. ...++++++||+.+++|+.+++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 6899999999999999999998 7788999999999999999985
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.93 E-value=2.1e-09 Score=74.40 Aligned_cols=47 Identities=40% Similarity=0.836 Sum_probs=42.3
Q ss_pred CCEEEEEcccc--CCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEE
Q 011542 86 DCHMFIFGGRF--GSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAI 135 (483)
Q Consensus 86 ~~~iyv~GG~~--~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~ 135 (483)
+++||||||.+ ....++++|+||+.+++|+++. ++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence 57999999998 5777899999999999999994 59999999999874
No 36
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.90 E-value=1.8e-09 Score=74.83 Aligned_cols=44 Identities=41% Similarity=0.759 Sum_probs=30.2
Q ss_pred CCcceeEEEECCcEEEEEcccCCC-ccccceEEEEcCCCcEEeee
Q 011542 19 PRSGHSAVNIGKSKVVVFGGLVDK-RFLSDVVVYDIDNKLWFQPE 62 (483)
Q Consensus 19 ~R~~h~~~~~~~~~l~v~GG~~~~-~~~~~~~~yd~~~~~W~~~~ 62 (483)
||.+|+++.+++++||||||.+.. ..++|+|+||+.+++|+.++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~ 45 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP 45 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC
Confidence 699999999977899999999865 69999999999999999985
No 37
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.90 E-value=3.9e-09 Score=73.11 Aligned_cols=44 Identities=43% Similarity=0.833 Sum_probs=40.1
Q ss_pred CcceeEEEEECCEEEEEccc---cCCCCCccEEEEECCCCeEEEeec
Q 011542 76 PRAFHIAVAIDCHMFIFGGR---FGSRRLGDFWVLDTDIWQWSELTS 119 (483)
Q Consensus 76 ~R~~h~~~~~~~~iyv~GG~---~~~~~~~~~~~yd~~t~~W~~l~~ 119 (483)
||++|++++++++||||||+ ......+++++||+++++|+.+++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 68999999999999999999 446778999999999999999875
No 38
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.90 E-value=3.3e-09 Score=73.49 Aligned_cols=46 Identities=43% Similarity=0.936 Sum_probs=41.7
Q ss_pred cEEEEEecCC--CCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe
Q 011542 138 RKIVMYGGWD--GKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV 186 (483)
Q Consensus 138 ~~iyv~GG~~--~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~ 186 (483)
++||||||.+ ....++++|+||+.+++|+++. ++|.+|++|+++++
T Consensus 2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 2 NKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI 49 (49)
T ss_pred CEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence 4899999998 5678999999999999999995 89999999999863
No 39
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.87 E-value=2.7e-09 Score=73.94 Aligned_cols=44 Identities=43% Similarity=0.838 Sum_probs=30.4
Q ss_pred CcceeEEEEE-CCEEEEEccccCC-CCCccEEEEECCCCeEEEeec
Q 011542 76 PRAFHIAVAI-DCHMFIFGGRFGS-RRLGDFWVLDTDIWQWSELTS 119 (483)
Q Consensus 76 ~R~~h~~~~~-~~~iyv~GG~~~~-~~~~~~~~yd~~t~~W~~l~~ 119 (483)
||.+|+++.+ +++||||||++.. ..++++|+||+.+++|+++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--S
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCC
Confidence 6999999998 5899999999875 689999999999999999964
No 40
>PLN02772 guanylate kinase
Probab=98.78 E-value=3.3e-08 Score=97.37 Aligned_cols=83 Identities=25% Similarity=0.449 Sum_probs=71.2
Q ss_pred CCCCCcccEEEEECCcEEEEEecCCCCc-CCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe-CCEEEEEccCCCCC
Q 011542 123 LPSPRDFAAASAIGNRKIVMYGGWDGKK-WLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGG 200 (483)
Q Consensus 123 ~p~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~ 200 (483)
-+.++..++++++++ ++||+||.+... ..+.+++||..|.+|....+.|..|.+|.+|+++.+ +++|+|+++.....
T Consensus 21 ~~~~~~~~tav~igd-k~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~ 99 (398)
T PLN02772 21 GVKPKNRETSVTIGD-KTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD 99 (398)
T ss_pred cCCCCCcceeEEECC-EEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc
Confidence 456888899999987 999999987765 789999999999999999999999999999999999 57999999765432
Q ss_pred Ccccceecc
Q 011542 201 PIMGDLWAL 209 (483)
Q Consensus 201 ~~~~d~~~l 209 (483)
.++|.|
T Consensus 100 ---~~~w~l 105 (398)
T PLN02772 100 ---DSIWFL 105 (398)
T ss_pred ---cceEEE
Confidence 455655
No 41
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.78 E-value=8.4e-09 Score=70.77 Aligned_cols=46 Identities=41% Similarity=0.702 Sum_probs=40.5
Q ss_pred CCcccEEEEECCcEEEEEecCCC-CcCCccEEEEECCCCceEEeccCCCCC
Q 011542 126 PRDFAAASAIGNRKIVMYGGWDG-KKWLSDVYVLDTISLEWMQLPVTGSVP 175 (483)
Q Consensus 126 ~r~~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~i~~~~~~p 175 (483)
+|..|+++++++ +|||+||.+. ...++++++||+.+++|+.++ +||
T Consensus 1 pR~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGN-KIYVIGGYDGNNQPTNSVEVYDPETNTWEELP---PMP 47 (47)
T ss_dssp -BBSEEEEEETT-EEEEEEEBESTSSBEEEEEEEETTTTEEEEEE---EES
T ss_pred CCccCEEEEECC-EEEEEeeecccCceeeeEEEEeCCCCEEEEcC---CCC
Confidence 588899999976 9999999988 678999999999999999998 554
No 42
>PF13854 Kelch_5: Kelch motif
Probab=98.69 E-value=3.6e-08 Score=65.67 Aligned_cols=40 Identities=35% Similarity=0.572 Sum_probs=35.8
Q ss_pred CCCCcceeEEEEECCEEEEEcccc--CCCCCccEEEEECCCC
Q 011542 73 GPGPRAFHIAVAIDCHMFIFGGRF--GSRRLGDFWVLDTDIW 112 (483)
Q Consensus 73 ~p~~R~~h~~~~~~~~iyv~GG~~--~~~~~~~~~~yd~~t~ 112 (483)
.|.+|++|++++++++||||||+. ....++++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 378999999999999999999998 3677899999999763
No 43
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.68 E-value=5.4e-08 Score=67.30 Aligned_cols=43 Identities=35% Similarity=0.658 Sum_probs=38.2
Q ss_pred CCcccEEEEECCcEEEEEecC---CCCcCCccEEEEECCCCceEEec
Q 011542 126 PRDFAAASAIGNRKIVMYGGW---DGKKWLSDVYVLDTISLEWMQLP 169 (483)
Q Consensus 126 ~r~~~~~~~~~~~~iyv~GG~---~~~~~~~~v~~yd~~t~~W~~i~ 169 (483)
+|..|+++++++ +||||||. ......+++++||+.+++|+.++
T Consensus 1 ~r~~hs~~~~~~-kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 1 PRYGHSAVVLDG-KIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred CccceEEEEECC-EEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 588899998866 99999999 45568999999999999999997
No 44
>smart00612 Kelch Kelch domain.
Probab=98.62 E-value=5.6e-08 Score=66.43 Aligned_cols=47 Identities=40% Similarity=0.777 Sum_probs=42.2
Q ss_pred EEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEeCC
Q 011542 139 KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK 188 (483)
Q Consensus 139 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~ 188 (483)
+||++||.......+++++||+.+++|+.++ +||.+|..|+++.+++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 4899999987677899999999999999998 9999999999988754
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.56 E-value=1.5e-07 Score=62.59 Aligned_cols=39 Identities=38% Similarity=0.842 Sum_probs=34.9
Q ss_pred CCCCCcceeEEEECCcEEEEEcccC--CCccccceEEEEcCC
Q 011542 16 VPQPRSGHSAVNIGKSKVVVFGGLV--DKRFLSDVVVYDIDN 55 (483)
Q Consensus 16 ~p~~R~~h~~~~~~~~~l~v~GG~~--~~~~~~~~~~yd~~~ 55 (483)
.|.+|.+|++++++ ++||||||.. .....+|+|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~-~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVG-NNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEEC-CEEEEEcCccCCCCCEECcEEEEECCC
Confidence 48899999999998 5999999998 477889999999876
No 46
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.52 E-value=1e-05 Score=75.35 Aligned_cols=156 Identities=17% Similarity=0.204 Sum_probs=105.3
Q ss_pred EEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCC----CceEEeccCCCCCCCCc
Q 011542 104 FWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTIS----LEWMQLPVTGSVPPPRC 179 (483)
Q Consensus 104 ~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t----~~W~~i~~~~~~p~~r~ 179 (483)
--.||+.+++++.+. ...-.++.+.+...||++++.||... -...+..|++.+ ..|.+... .|..+|-
T Consensus 48 s~~yD~~tn~~rpl~----v~td~FCSgg~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~~~--~m~~~RW 119 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLT----VQTDTFCSGGAFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTESPN--DMQSGRW 119 (243)
T ss_pred EEEEecCCCcEEecc----CCCCCcccCcCCCCCCCEEEeCCCCc--cccceEEEecCCCCCCCCceECcc--cccCCCc
Confidence 356999999999886 44555555556678899999999865 245577788765 67988752 4899999
Q ss_pred CceEEEe-CCEEEEEccCCCCCCcccceecccccccccCC-----CCCeEEec-cCCCCCCCCeeeEEEEeCCEEEEEcC
Q 011542 180 GHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENE-----TPGWTQLK-LPGQAPSSRCGHTITSGGHYLLLFGG 252 (483)
Q Consensus 180 ~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~-----~~~W~~~~-~~g~~p~~r~~~~~~~~~~~i~v~GG 252 (483)
..+++.+ +++++|+||.... ..|.+... ...|..+. +....+...+-+..+.-+++||+++.
T Consensus 120 YpT~~~L~DG~vlIvGG~~~~-----------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an 188 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNNP-----------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN 188 (243)
T ss_pred cccceECCCCCEEEEeCcCCC-----------cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc
Confidence 9998888 7899999998632 12222221 11222222 11134556666667778899999987
Q ss_pred CCCCCCCcccceeeCcEEEEEcCCCce-EEccCCCCCCCCCcc
Q 011542 253 HGTGGWLSRYDIYYNDTIILDRLSAQW-KRLPIGNEPPPARAY 294 (483)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~yd~~~~~W-~~v~~~~~~p~~R~~ 294 (483)
. +-++||..++++ +.++.++.. +|.+
T Consensus 189 ~--------------~s~i~d~~~n~v~~~lP~lPg~--~R~Y 215 (243)
T PF07250_consen 189 R--------------GSIIYDYKTNTVVRTLPDLPGG--PRNY 215 (243)
T ss_pred C--------------CcEEEeCCCCeEEeeCCCCCCC--ceec
Confidence 4 357889999987 677776432 4543
No 47
>smart00612 Kelch Kelch domain.
Probab=98.51 E-value=1.6e-07 Score=64.15 Aligned_cols=46 Identities=30% Similarity=0.608 Sum_probs=40.7
Q ss_pred EEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEEC
Q 011542 88 HMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIG 136 (483)
Q Consensus 88 ~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~ 136 (483)
+||++||..+...++++++||+.+++|..+++ +|.+|..|++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPS---MPTPRSGHGVAVIN 46 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCC---CCCccccceEEEeC
Confidence 48999999776678899999999999999885 99999999988874
No 48
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.34 E-value=2.5e-05 Score=72.74 Aligned_cols=146 Identities=17% Similarity=0.233 Sum_probs=94.3
Q ss_pred eEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE-ECCEEEEEccccCCCCCccEEEEECCC----CeEEEeecCCC
Q 011542 48 VVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSRRLGDFWVLDTDI----WQWSELTSFGD 122 (483)
Q Consensus 48 ~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t----~~W~~l~~~~~ 122 (483)
-..||+.+++++.+... .--+|.+.+. -++++++.||...+ ...+-.|++.+ ..|.+... .
T Consensus 48 s~~yD~~tn~~rpl~v~----------td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~--~ 113 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ----------TDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPN--D 113 (243)
T ss_pred EEEEecCCCcEEeccCC----------CCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECcc--c
Confidence 45699999999998643 2223333333 37799999998653 23567788765 67988764 4
Q ss_pred CCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECC------CCceEEeccC-CCCCCCCcCceEEEeCCEEEEEcc
Q 011542 123 LPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI------SLEWMQLPVT-GSVPPPRCGHTATMVEKRLLIYGG 195 (483)
Q Consensus 123 ~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~------t~~W~~i~~~-~~~p~~r~~~~~~~~~~~lyv~GG 195 (483)
|..+|.+.+++.+.||+++|+||.... .+.|-+. ...|..+... ...+...+-+..+.-+++||+++.
T Consensus 114 m~~~RWYpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an 188 (243)
T PF07250_consen 114 MQSGRWYPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN 188 (243)
T ss_pred ccCCCccccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc
Confidence 889999999999999999999998632 2223222 1223223211 123334444555555899999998
Q ss_pred CCCCCCcccceecccccccccCCCCCe-EEec
Q 011542 196 RGGGGPIMGDLWALKGLIEEENETPGW-TQLK 226 (483)
Q Consensus 196 ~~~~~~~~~d~~~l~~~~~yd~~~~~W-~~~~ 226 (483)
.. ...||..++++ ..++
T Consensus 189 ~~--------------s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 189 RG--------------SIIYDYKTNTVVRTLP 206 (243)
T ss_pred CC--------------cEEEeCCCCeEEeeCC
Confidence 42 23468888877 4444
No 49
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.28 E-value=2.8e-05 Score=71.98 Aligned_cols=166 Identities=20% Similarity=0.287 Sum_probs=97.4
Q ss_pred EEEEEecCCCC-cCCccEEEEECCCCc--------eEEeccCCCCCCCCcCceEEEe----CCEEEEEccCCCC--CCcc
Q 011542 139 KIVMYGGWDGK-KWLSDVYVLDTISLE--------WMQLPVTGSVPPPRCGHTATMV----EKRLLIYGGRGGG--GPIM 203 (483)
Q Consensus 139 ~iyv~GG~~~~-~~~~~v~~yd~~t~~--------W~~i~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~--~~~~ 203 (483)
..++.||+..+ ...+.+|+..+.+.. ..+...-|..|.+|++|++.++ +...++|||+..- +...
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 56677888765 456778888776543 2222334799999999999888 2368889997642 1122
Q ss_pred cceec-----ccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCC--
Q 011542 204 GDLWA-----LKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLS-- 276 (483)
Q Consensus 204 ~d~~~-----l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~-- 276 (483)
.+-|. ...++..|++-+..+.-..+ .+-.....|.+...++.+|++||+.-.. +.....++++..+-
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~lp-El~dG~SFHvslar~D~VYilGGHsl~s-----d~Rpp~l~rlkVdLll 193 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTLP-ELQDGQSFHVSLARNDCVYILGGHSLES-----DSRPPRLYRLKVDLLL 193 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccch-hhcCCeEEEEEEecCceEEEEccEEccC-----CCCCCcEEEEEEeecC
Confidence 22221 12345557766666554432 4556677788888999999999987543 12334455554321
Q ss_pred -CceEEccCCCCCCCCCcceEEEEE---CCEEEEEccCCCC
Q 011542 277 -AQWKRLPIGNEPPPARAYHSMTCL---GSLYLLFGGFDGK 313 (483)
Q Consensus 277 -~~W~~v~~~~~~p~~R~~~~~~~~---~~~i~v~GG~~~~ 313 (483)
.-+-.... .+......++++. .+..+|+||+...
T Consensus 194 GSP~vsC~v---l~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 194 GSPAVSCTV---LQGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred CCceeEEEE---CCCCceEeeeeEeecCCCceEEEeccccc
Confidence 11111111 1223333333332 4788899998643
No 50
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.27 E-value=0.00035 Score=65.49 Aligned_cols=204 Identities=12% Similarity=0.038 Sum_probs=111.2
Q ss_pred cceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE---CC-EEEEEccccCCCCCccEEEEECCCCeEEEeecCC
Q 011542 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI---DC-HMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFG 121 (483)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~---~~-~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~ 121 (483)
..+.++||.|++|..++..... ..-..+...+.... +. +|..+...........+++|+..++.|+.+.+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~----~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~- 88 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSR----RSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECS- 88 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCc----ccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccC-
Confidence 5789999999999999743110 00001110111111 12 555554432222334689999999999998741
Q ss_pred CCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEE-eccCCCCCCCC----cCceEEEeCCEEEEEccC
Q 011542 122 DLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQ-LPVTGSVPPPR----CGHTATMVEKRLLIYGGR 196 (483)
Q Consensus 122 ~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~-i~~~~~~p~~r----~~~~~~~~~~~lyv~GG~ 196 (483)
.+........+.+ +|.+|.+.-.........+..||+.+.+|.. ++ +|..+ ....++..+++|.++...
T Consensus 89 -~~~~~~~~~~v~~-~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L~~v~~~ 162 (230)
T TIGR01640 89 -PPHHPLKSRGVCI-NGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKLAVLKQK 162 (230)
T ss_pred -CCCccccCCeEEE-CCEEEEEEEECCCCCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEEEEEEec
Confidence 1211112224444 5688888754332222268999999999995 64 33322 234455668999888754
Q ss_pred CCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCe----eeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEE
Q 011542 197 GGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRC----GHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIIL 272 (483)
Q Consensus 197 ~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~----~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~y 272 (483)
.... .-++|.++ |-....|++.-.-...+.+.. ....+..+++|++.... ..+ .-+..|
T Consensus 163 ~~~~--~~~IWvl~-----d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~~---------~~~~~y 225 (230)
T TIGR01640 163 KDTN--NFDLWVLN-----DAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-ENP---------FYIFYY 225 (230)
T ss_pred CCCC--cEEEEEEC-----CCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CCc---------eEEEEE
Confidence 3221 24677764 333456987542111111111 12344567888886652 111 127888
Q ss_pred EcCCC
Q 011542 273 DRLSA 277 (483)
Q Consensus 273 d~~~~ 277 (483)
|+.++
T Consensus 226 ~~~~~ 230 (230)
T TIGR01640 226 NVGEN 230 (230)
T ss_pred eccCC
Confidence 88764
No 51
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.20 E-value=4.1e-05 Score=70.83 Aligned_cols=131 Identities=22% Similarity=0.342 Sum_probs=83.9
Q ss_pred eCCCCCCCCCCCcceeEEEE---CCcEEEEEcccCCC--------------ccccceEEEEcCCCcEEeeeecCCCCCCC
Q 011542 9 SSDFGGTVPQPRSGHSAVNI---GKSKVVVFGGLVDK--------------RFLSDVVVYDIDNKLWFQPECTGNGSNGQ 71 (483)
Q Consensus 9 ~~~~~g~~p~~R~~h~~~~~---~~~~l~v~GG~~~~--------------~~~~~~~~yd~~~~~W~~~~~~~~~~~~~ 71 (483)
.++..|+.|.+|+||++-++ ++...++|||..-. ...-.|+.+|++-+-.+.-.. +
T Consensus 77 EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l-------p 149 (337)
T PF03089_consen 77 EKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL-------P 149 (337)
T ss_pred cceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc-------h
Confidence 35678999999999999886 55569999997521 123357788888776654331 1
Q ss_pred CCCCCcceeEEEEECCEEEEEccccC--CCCCccEEEEECC---CCeEEEeecCCCCCCCCcccEEEE--ECCcEEEEEe
Q 011542 72 VGPGPRAFHIAVAIDCHMFIFGGRFG--SRRLGDFWVLDTD---IWQWSELTSFGDLPSPRDFAAASA--IGNRKIVMYG 144 (483)
Q Consensus 72 ~~p~~R~~h~~~~~~~~iyv~GG~~~--~~~~~~~~~yd~~---t~~W~~l~~~~~~p~~r~~~~~~~--~~~~~iyv~G 144 (483)
.+...-++|.+.+-++.||++||-.- +.+-..+++...+ ..-...... ++.+.+..++++ ++....+|+|
T Consensus 150 El~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~vsC~v---l~~glSisSAIvt~~~~~e~iIlG 226 (337)
T PF03089_consen 150 ELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAVSCTV---LQGGLSISSAIVTQTGPHEYIILG 226 (337)
T ss_pred hhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCceeEEEE---CCCCceEeeeeEeecCCCceEEEe
Confidence 23456789999999999999999753 3444456655432 222222222 444444433333 3445889999
Q ss_pred cCCCC
Q 011542 145 GWDGK 149 (483)
Q Consensus 145 G~~~~ 149 (483)
|+..+
T Consensus 227 GY~sd 231 (337)
T PF03089_consen 227 GYQSD 231 (337)
T ss_pred ccccc
Confidence 98654
No 52
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.08 E-value=0.00078 Score=63.13 Aligned_cols=187 Identities=13% Similarity=0.059 Sum_probs=106.0
Q ss_pred ccEEEEECCCCeEEEeecCCCCCCCCccc-EEEEE----CCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCC
Q 011542 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFA-AASAI----GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPP 176 (483)
Q Consensus 102 ~~~~~yd~~t~~W~~l~~~~~~p~~r~~~-~~~~~----~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~ 176 (483)
..+.++||.|++|..+++....+.....+ ....+ ++=+|..+...........+++|+..++.|+.+... .+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~--~~~ 91 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECS--PPH 91 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccC--CCC
Confidence 46899999999999997421110001111 11112 112566665432222345789999999999998722 111
Q ss_pred CCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEE-eccCCCCCCCC----eeeEEEEeCCEEEEEc
Q 011542 177 PRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQ-LKLPGQAPSSR----CGHTITSGGHYLLLFG 251 (483)
Q Consensus 177 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~-~~~~g~~p~~r----~~~~~~~~~~~i~v~G 251 (483)
.......+.++|.||-+.-...... ...+..||+.+.+|.. +.. |..+ ....++..+++|.++.
T Consensus 92 ~~~~~~~v~~~G~lyw~~~~~~~~~-------~~~IvsFDl~~E~f~~~i~~----P~~~~~~~~~~~L~~~~G~L~~v~ 160 (230)
T TIGR01640 92 HPLKSRGVCINGVLYYLAYTLKTNP-------DYFIVSFDVSSERFKEFIPL----PCGNSDSVDYLSLINYKGKLAVLK 160 (230)
T ss_pred ccccCCeEEECCEEEEEEEECCCCC-------cEEEEEEEcccceEeeeeec----CccccccccceEEEEECCEEEEEE
Confidence 1112226778999998875332110 1257788999999995 552 3322 2334556788888876
Q ss_pred CCCCCCCCcccceeeCcEEEEE-cCCCceEEccCCCCCCCCCcc----eEEEEECCEEEEEcc
Q 011542 252 GHGTGGWLSRYDIYYNDTIILD-RLSAQWKRLPIGNEPPPARAY----HSMTCLGSLYLLFGG 309 (483)
Q Consensus 252 G~~~~~~~~~~~~~~~~v~~yd-~~~~~W~~v~~~~~~p~~R~~----~~~~~~~~~i~v~GG 309 (483)
...... .-+||+++ -....|++.-..+.++.+... ...+.-+++|++..+
T Consensus 161 ~~~~~~--------~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~ 215 (230)
T TIGR01640 161 QKKDTN--------NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE 215 (230)
T ss_pred ecCCCC--------cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence 543211 14789986 345679875443322222221 233445788888765
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.12 E-value=0.31 Score=49.57 Aligned_cols=222 Identities=14% Similarity=0.106 Sum_probs=113.6
Q ss_pred EECCcEEEEEcccCCCccccceEEEEcCCC--cEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccE
Q 011542 27 NIGKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDF 104 (483)
Q Consensus 27 ~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~ 104 (483)
++.+++||+.+.. ..+++||..++ .|+.-....... ......++.....++.+++||+.+. + ..+
T Consensus 66 vv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~v~v~~~-~-----g~l 132 (394)
T PRK11138 66 AVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKDGW-FSKNKSALLSGGVTVAGGKVYIGSE-K-----GQV 132 (394)
T ss_pred EEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCcccc-cccccccccccccEEECCEEEEEcC-C-----CEE
Confidence 3445789987652 36899998866 587532110000 0000012333345667889887432 2 358
Q ss_pred EEEECCCC--eEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc--eEEeccCCCCCCCCcC
Q 011542 105 WVLDTDIW--QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPPPRCG 180 (483)
Q Consensus 105 ~~yd~~t~--~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~i~~~~~~p~~r~~ 180 (483)
+++|.+++ .|+.-.. ... .+..++.++.+|+..+ ...++.+|+.|++ |+.-.. .+....+..
T Consensus 133 ~ald~~tG~~~W~~~~~-----~~~--~ssP~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~ 198 (394)
T PRK11138 133 YALNAEDGEVAWQTKVA-----GEA--LSRPVVSDGLVLVHTS------NGMLQALNESDGAVKWTVNLD-VPSLTLRGE 198 (394)
T ss_pred EEEECCCCCCcccccCC-----Cce--ecCCEEECCEEEEECC------CCEEEEEEccCCCEeeeecCC-CCcccccCC
Confidence 99999876 4865331 111 1222333557877433 2358999998876 876431 111111222
Q ss_pred ceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCC--CeEEecc--CCCCCCCC---eeeEEEEeCCEEEEEcCC
Q 011542 181 HTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETP--GWTQLKL--PGQAPSSR---CGHTITSGGHYLLLFGGH 253 (483)
Q Consensus 181 ~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~--~W~~~~~--~g~~p~~r---~~~~~~~~~~~i~v~GG~ 253 (483)
.+-+..++.+|+..+. ..+..+|+++. .|+.-.. .+.....| ...+.++.++.+|+.+..
T Consensus 199 ~sP~v~~~~v~~~~~~-------------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~ 265 (394)
T PRK11138 199 SAPATAFGGAIVGGDN-------------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN 265 (394)
T ss_pred CCCEEECCEEEEEcCC-------------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC
Confidence 2334456777664432 11223355443 5764221 00000001 112344578888875531
Q ss_pred CCCCCCcccceeeCcEEEEEcCCC--ceEEccCCCCCCCCCcceEEEEECCEEEEEcc
Q 011542 254 GTGGWLSRYDIYYNDTIILDRLSA--QWKRLPIGNEPPPARAYHSMTCLGSLYLLFGG 309 (483)
Q Consensus 254 ~~~~~~~~~~~~~~~v~~yd~~~~--~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG 309 (483)
..++.+|+.+. .|+.--.. . ...+..+++||+...
T Consensus 266 -------------g~l~ald~~tG~~~W~~~~~~-----~---~~~~~~~~~vy~~~~ 302 (394)
T PRK11138 266 -------------GNLVALDLRSGQIVWKREYGS-----V---NDFAVDGGRIYLVDQ 302 (394)
T ss_pred -------------CeEEEEECCCCCEEEeecCCC-----c---cCcEEECCEEEEEcC
Confidence 35889998765 48752111 1 134567888888753
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.09 E-value=0.18 Score=51.35 Aligned_cols=193 Identities=11% Similarity=0.046 Sum_probs=101.4
Q ss_pred ceEEEEcCCCc--EEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCCCe--EEEeecCCC
Q 011542 47 DVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQ--WSELTSFGD 122 (483)
Q Consensus 47 ~~~~yd~~~~~--W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~l~~~~~ 122 (483)
.++.||+.+++ |..-... +....+...+-++.++.+|+..+ + ..++.+|+.+++ |+.-..
T Consensus 171 ~l~ald~~tG~~~W~~~~~~-------~~~~~~~~~sP~v~~~~v~~~~~-~-----g~v~a~d~~~G~~~W~~~~~--- 234 (394)
T PRK11138 171 MLQALNESDGAVKWTVNLDV-------PSLTLRGESAPATAFGGAIVGGD-N-----GRVSAVLMEQGQLIWQQRIS--- 234 (394)
T ss_pred EEEEEEccCCCEeeeecCCC-------CcccccCCCCCEEECCEEEEEcC-C-----CEEEEEEccCChhhheeccc---
Confidence 57889988774 7764311 00111222233455677766433 1 247888887764 764221
Q ss_pred CCCC-----C---cccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc--eEEeccCCCCCCCCcCceEEEeCCEEEE
Q 011542 123 LPSP-----R---DFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPPPRCGHTATMVEKRLLI 192 (483)
Q Consensus 123 ~p~~-----r---~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~i~~~~~~p~~r~~~~~~~~~~~lyv 192 (483)
.|.. + ...+-++. ++.+|+.+. ...++.+|+.+++ |+.-. ... ...+..++++|+
T Consensus 235 ~~~~~~~~~~~~~~~~sP~v~-~~~vy~~~~------~g~l~ald~~tG~~~W~~~~-----~~~---~~~~~~~~~vy~ 299 (394)
T PRK11138 235 QPTGATEIDRLVDVDTTPVVV-GGVVYALAY------NGNLVALDLRSGQIVWKREY-----GSV---NDFAVDGGRIYL 299 (394)
T ss_pred cCCCccchhcccccCCCcEEE-CCEEEEEEc------CCeEEEEECCCCCEEEeecC-----CCc---cCcEEECCEEEE
Confidence 1111 1 11222333 458887652 2358999998875 87632 111 134566889999
Q ss_pred EccCCCCCCcccceecccccccccCCCC--CeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEE
Q 011542 193 YGGRGGGGPIMGDLWALKGLIEEENETP--GWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTI 270 (483)
Q Consensus 193 ~GG~~~~~~~~~d~~~l~~~~~yd~~~~--~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~ 270 (483)
.... ..+..+|+.+. .|+.-. ...+...+.++.++.||+.... ..++
T Consensus 300 ~~~~-------------g~l~ald~~tG~~~W~~~~-----~~~~~~~sp~v~~g~l~v~~~~-------------G~l~ 348 (394)
T PRK11138 300 VDQN-------------DRVYALDTRGGVELWSQSD-----LLHRLLTAPVLYNGYLVVGDSE-------------GYLH 348 (394)
T ss_pred EcCC-------------CeEEEEECCCCcEEEcccc-----cCCCcccCCEEECCEEEEEeCC-------------CEEE
Confidence 7532 22334466554 465322 1122223445678888874321 3478
Q ss_pred EEEcCCCc--eEE-ccCCCCCCCCCcceEEEEECCEEEEE
Q 011542 271 ILDRLSAQ--WKR-LPIGNEPPPARAYHSMTCLGSLYLLF 307 (483)
Q Consensus 271 ~yd~~~~~--W~~-v~~~~~~p~~R~~~~~~~~~~~i~v~ 307 (483)
.+|..+.+ |+. +.. .....+-++.+++|||-
T Consensus 349 ~ld~~tG~~~~~~~~~~------~~~~s~P~~~~~~l~v~ 382 (394)
T PRK11138 349 WINREDGRFVAQQKVDS------SGFLSEPVVADDKLLIQ 382 (394)
T ss_pred EEECCCCCEEEEEEcCC------CcceeCCEEECCEEEEE
Confidence 88887654 443 211 22344456678877776
No 55
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.03 E-value=0.037 Score=55.02 Aligned_cols=119 Identities=23% Similarity=0.350 Sum_probs=75.7
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCC-----c
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRL-----G 102 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~-----~ 102 (483)
+.+.+|+..+.. ....+||+.+..-...+ .++.+...-.++.++++||++......... .
T Consensus 74 l~gskIv~~d~~------~~t~vyDt~t~av~~~P---------~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~ 138 (342)
T PF07893_consen 74 LHGSKIVAVDQS------GRTLVYDTDTRAVATGP---------RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFP 138 (342)
T ss_pred ecCCeEEEEcCC------CCeEEEECCCCeEeccC---------CCCCCCcceEEEEeCCeEEEeeccCccccccCccce
Confidence 445788888664 34789999998777554 344555555777789999999876432111 1
Q ss_pred cEEEE--E--------CCCCeEEEeecCCCCCCCCc-------ccEEEEECCcEEEE-EecCCCCcCCccEEEEECCCCc
Q 011542 103 DFWVL--D--------TDIWQWSELTSFGDLPSPRD-------FAAASAIGNRKIVM-YGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 103 ~~~~y--d--------~~t~~W~~l~~~~~~p~~r~-------~~~~~~~~~~~iyv-~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
.++++ + .....|..+++ +|-.+. -.+-+++++..|+| .-|.. ...|+||+.+.+
T Consensus 139 ~FE~l~~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~ 210 (342)
T PF07893_consen 139 CFEALVYRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHE 210 (342)
T ss_pred eEEEeccccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcc
Confidence 45555 3 34567888875 333222 22333344558888 33321 348999999999
Q ss_pred eEEec
Q 011542 165 WMQLP 169 (483)
Q Consensus 165 W~~i~ 169 (483)
|++.-
T Consensus 211 W~~~G 215 (342)
T PF07893_consen 211 WRKHG 215 (342)
T ss_pred eeecc
Confidence 99984
No 56
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.54 E-value=0.034 Score=53.36 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=70.6
Q ss_pred cccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCC-CCccEEEEECCCCeEEEeecC-
Q 011542 44 FLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSR-RLGDFWVLDTDIWQWSELTSF- 120 (483)
Q Consensus 44 ~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~-~~~~~~~yd~~t~~W~~l~~~- 120 (483)
....++.||+.+.+|..+... -..- -..+... +++||+.|-..-.. ....+-.||..+++|..+...
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~---------i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~ 83 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNG---------ISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGS 83 (281)
T ss_pred CCCEEEEEECCCCEeecCCCC---------ceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcc
Confidence 578899999999999997521 1111 1233333 67888887665433 455688999999999888752
Q ss_pred -CCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEec
Q 011542 121 -GDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLP 169 (483)
Q Consensus 121 -~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~ 169 (483)
..+|.+.........+...+++.|.. ..-..-+..| +-.+|..+.
T Consensus 84 s~~ipgpv~a~~~~~~d~~~~~~aG~~--~~g~~~l~~~--dGs~W~~i~ 129 (281)
T PF12768_consen 84 SNSIPGPVTALTFISNDGSNFWVAGRS--ANGSTFLMKY--DGSSWSSIG 129 (281)
T ss_pred cccCCCcEEEEEeeccCCceEEEecee--cCCCceEEEE--cCCceEecc
Confidence 34566653333333333478887765 2123335555 567999886
No 57
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.23 E-value=1.6 Score=44.00 Aligned_cols=168 Identities=13% Similarity=0.123 Sum_probs=84.3
Q ss_pred EEECCEEEEEccccCCCCCccEEEEECCCC--eEEEeecCCCCCC-CCcccEEEEECCcEEEEEecCCCCcCCccEEEEE
Q 011542 83 VAIDCHMFIFGGRFGSRRLGDFWVLDTDIW--QWSELTSFGDLPS-PRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLD 159 (483)
Q Consensus 83 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~--~W~~l~~~~~~p~-~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd 159 (483)
++.++.+|+..+ -..++.+|+.++ .|+.-.. ..+. .+...+.++. ++.+| +|..+ ..++.+|
T Consensus 142 ~v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~--~~~~~~~~~~sp~~~-~~~v~-~~~~~-----g~v~ald 206 (377)
T TIGR03300 142 LVANGLVVVRTN------DGRLTALDAATGERLWTYSRV--TPALTLRGSASPVIA-DGGVL-VGFAG-----GKLVALD 206 (377)
T ss_pred EEECCEEEEECC------CCeEEEEEcCCCceeeEEccC--CCceeecCCCCCEEE-CCEEE-EECCC-----CEEEEEE
Confidence 345667766432 134889999876 4765432 1111 1222233334 33554 44322 3588899
Q ss_pred CCCC--ceEEeccCCCCCCC--------CcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCC--CeEEecc
Q 011542 160 TISL--EWMQLPVTGSVPPP--------RCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETP--GWTQLKL 227 (483)
Q Consensus 160 ~~t~--~W~~i~~~~~~p~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~--~W~~~~~ 227 (483)
+.++ .|+.-. ..+.. ....+.+..++.+|+.... ..+..||+++. .|+.-.
T Consensus 207 ~~tG~~~W~~~~---~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~-------------g~l~a~d~~tG~~~W~~~~- 269 (377)
T TIGR03300 207 LQTGQPLWEQRV---ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ-------------GRVAALDLRSGRVLWKRDA- 269 (377)
T ss_pred ccCCCEeeeecc---ccCCCCCchhhhhccCCccEEECCEEEEEEcC-------------CEEEEEECCCCcEEEeecc-
Confidence 8876 476432 11111 1122334457888885432 22444576554 365421
Q ss_pred CCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCC--ceEEccCCCCCCCCCcceEEEEECCEEE
Q 011542 228 PGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSA--QWKRLPIGNEPPPARAYHSMTCLGSLYL 305 (483)
Q Consensus 228 ~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~v~~~~~~p~~R~~~~~~~~~~~i~ 305 (483)
+ ...+.++.++.+|+... ...++.+|..+. .|+.-... .+...+.++.++.+|
T Consensus 270 ----~---~~~~p~~~~~~vyv~~~-------------~G~l~~~d~~tG~~~W~~~~~~-----~~~~ssp~i~g~~l~ 324 (377)
T TIGR03300 270 ----S---SYQGPAVDDNRLYVTDA-------------DGVVVALDRRSGSELWKNDELK-----YRQLTAPAVVGGYLV 324 (377)
T ss_pred ----C---CccCceEeCCEEEEECC-------------CCeEEEEECCCCcEEEcccccc-----CCccccCEEECCEEE
Confidence 1 11233457888888642 135888888654 47652211 122333445677776
Q ss_pred EE
Q 011542 306 LF 307 (483)
Q Consensus 306 v~ 307 (483)
+.
T Consensus 325 ~~ 326 (377)
T TIGR03300 325 VG 326 (377)
T ss_pred EE
Confidence 64
No 58
>PRK13684 Ycf48-like protein; Provisional
Probab=96.19 E-value=1.5 Score=43.47 Aligned_cols=176 Identities=13% Similarity=0.195 Sum_probs=87.4
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEE-EECCCCc
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYV-LDTISLE 164 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~-yd~~t~~ 164 (483)
++.+|+.|... .+++=+-.-.+|+.+.. +..-..+.+....++.++++|. .+ .++. .|....+
T Consensus 142 ~~~~~~~g~~G------~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~-~G-----~i~~s~~~gg~t 205 (334)
T PRK13684 142 PGTAEMATNVG------AIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSS-RG-----NFYSTWEPGQTA 205 (334)
T ss_pred CCcceeeeccc------eEEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeC-Cc-----eEEEEcCCCCCe
Confidence 44566665421 24433335568998763 2222344555555655554443 22 1222 2344467
Q ss_pred eEEeccCCCCCCCCcCceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-
Q 011542 165 WMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS- 242 (483)
Q Consensus 165 W~~i~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~- 242 (483)
|+.+. .+..+.-.+++.. +++++++|....- .+. =+-...+|+.+..+. ......-++++.
T Consensus 206 W~~~~----~~~~~~l~~i~~~~~g~~~~vg~~G~~--------~~~----s~d~G~sW~~~~~~~-~~~~~~l~~v~~~ 268 (334)
T PRK13684 206 WTPHQ----RNSSRRLQSMGFQPDGNLWMLARGGQI--------RFN----DPDDLESWSKPIIPE-ITNGYGYLDLAYR 268 (334)
T ss_pred EEEee----CCCcccceeeeEcCCCCEEEEecCCEE--------EEc----cCCCCCccccccCCc-cccccceeeEEEc
Confidence 99875 2344444555554 6788888753210 010 023456899765211 101111233333
Q ss_pred eCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEE-CCEEEEEcc
Q 011542 243 GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFGG 309 (483)
Q Consensus 243 ~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~-~~~i~v~GG 309 (483)
.++.++++|.... ++.-.....+|+.++..... +.....++.. +++.|+.|.
T Consensus 269 ~~~~~~~~G~~G~-------------v~~S~d~G~tW~~~~~~~~~--~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 269 TPGEIWAGGGNGT-------------LLVSKDGGKTWEKDPVGEEV--PSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred CCCCEEEEcCCCe-------------EEEeCCCCCCCeECCcCCCC--CcceEEEEEeCCCceEEECC
Confidence 3567888875421 33323345799998642212 2234445544 677877765
No 59
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.09 E-value=0.25 Score=49.30 Aligned_cols=152 Identities=14% Similarity=0.157 Sum_probs=83.3
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcc-cEEEEECCcE-EEEEecCCCCcCCccEEEEECCCC
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDF-AAASAIGNRK-IVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~-~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
.-.+.+.+|+++.- .++..|-++|. .+.+ +.-.++- .+++...+|. ..+++|+ ..-+|.||+.+.
T Consensus 224 ~~plllvaG~d~~l---rifqvDGk~N~--~lqS---~~l~~fPi~~a~f~p~G~~~i~~s~r-----rky~ysyDle~a 290 (514)
T KOG2055|consen 224 TAPLLLVAGLDGTL---RIFQVDGKVNP--KLQS---IHLEKFPIQKAEFAPNGHSVIFTSGR-----RKYLYSYDLETA 290 (514)
T ss_pred CCceEEEecCCCcE---EEEEecCccCh--hhee---eeeccCccceeeecCCCceEEEeccc-----ceEEEEeecccc
Confidence 34688888887643 35666666665 3322 1111111 1222223444 6666764 344899999999
Q ss_pred ceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEe
Q 011542 164 EWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSG 243 (483)
Q Consensus 164 ~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~ 243 (483)
+-.++.+...++.+-.....+...+.++++-|..+. +......+..|..-- .++......+....
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~------------I~lLhakT~eli~s~---KieG~v~~~~fsSd 355 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH------------IHLLHAKTKELITSF---KIEGVVSDFTFSSD 355 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCce------------EEeehhhhhhhhhee---eeccEEeeEEEecC
Confidence 999987544444333333344455556666665442 112244555554221 12222233333345
Q ss_pred CCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCc
Q 011542 244 GHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (483)
Q Consensus 244 ~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (483)
+..|++.||.+ .||++|+.++.
T Consensus 356 sk~l~~~~~~G-------------eV~v~nl~~~~ 377 (514)
T KOG2055|consen 356 SKELLASGGTG-------------EVYVWNLRQNS 377 (514)
T ss_pred CcEEEEEcCCc-------------eEEEEecCCcc
Confidence 56788888754 49999998873
No 60
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.00 E-value=1.3 Score=41.03 Aligned_cols=185 Identities=17% Similarity=0.224 Sum_probs=102.1
Q ss_pred EEECCcEEEEEcccCCCccccceEEEEcCCCc--EEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCcc
Q 011542 26 VNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGD 103 (483)
Q Consensus 26 ~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~ 103 (483)
.+..++.+|+..+ ...++++|+.+++ |+.-. +. +.....+..++.||+.... +.
T Consensus 32 ~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~-----------~~-~~~~~~~~~~~~v~v~~~~------~~ 87 (238)
T PF13360_consen 32 AVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL-----------PG-PISGAPVVDGGRVYVGTSD------GS 87 (238)
T ss_dssp EEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC-----------SS-CGGSGEEEETTEEEEEETT------SE
T ss_pred EEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec-----------cc-cccceeeecccccccccce------ee
Confidence 4445578888743 3579999998874 66642 11 1112246778899887621 26
Q ss_pred EEEEECCCC--eEE-EeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc--eEEeccCCCCCCCC
Q 011542 104 FWVLDTDIW--QWS-ELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPPPR 178 (483)
Q Consensus 104 ~~~yd~~t~--~W~-~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~i~~~~~~p~~r 178 (483)
++.+|..++ .|+ ........+ ........+. ++.+|+... ...++.+|+.+++ |+.-. ..+...
T Consensus 88 l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~------~g~l~~~d~~tG~~~w~~~~---~~~~~~ 156 (238)
T PF13360_consen 88 LYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVD-GDRLYVGTS------SGKLVALDPKTGKLLWKYPV---GEPRGS 156 (238)
T ss_dssp EEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEE-TTEEEEEET------CSEEEEEETTTTEEEEEEES---STT-SS
T ss_pred eEecccCCcceeeeeccccccccc-cccccCceEe-cCEEEEEec------cCcEEEEecCCCcEEEEeec---CCCCCC
Confidence 899998776 488 343211111 2222333333 436666543 4568999998775 76643 222211
Q ss_pred --------cCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCC--eEEeccCCCCCCCCeeeEEEEeCCEEE
Q 011542 179 --------CGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPG--WTQLKLPGQAPSSRCGHTITSGGHYLL 248 (483)
Q Consensus 179 --------~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~--W~~~~~~g~~p~~r~~~~~~~~~~~i~ 248 (483)
.....+..++.+|+..+... +..+|..+.. |+.. ..+ ........++.+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~-------------~~~~d~~tg~~~w~~~-~~~------~~~~~~~~~~~l~ 216 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDGRVYVSSGDGR-------------VVAVDLATGEKLWSKP-ISG------IYSLPSVDGGTLY 216 (238)
T ss_dssp --EEEETTEEEEEECCTTEEEEECCTSS-------------EEEEETTTTEEEEEEC-SS-------ECECEECCCTEEE
T ss_pred cceeeecccccceEEECCEEEEEcCCCe-------------EEEEECCCCCEEEEec-CCC------ccCCceeeCCEEE
Confidence 11233334678888776431 2223777775 7433 211 2212445677888
Q ss_pred EEcCCCCCCCCcccceeeCcEEEEEcCCCc
Q 011542 249 LFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (483)
Q Consensus 249 v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (483)
+.. . .+.++.+|+.+.+
T Consensus 217 ~~~-~------------~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 217 VTS-S------------DGRLYALDLKTGK 233 (238)
T ss_dssp EEE-T------------TTEEEEEETTTTE
T ss_pred EEe-C------------CCEEEEEECCCCC
Confidence 765 2 1468999988764
No 61
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.77 E-value=2.5 Score=42.52 Aligned_cols=197 Identities=17% Similarity=0.163 Sum_probs=98.4
Q ss_pred cceEEEEcCCC--cEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCCC--eEEEeecCC
Q 011542 46 SDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIW--QWSELTSFG 121 (483)
Q Consensus 46 ~~~~~yd~~~~--~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~--~W~~l~~~~ 121 (483)
..++++|+.++ .|+..... +....+...+.++.++.+|+ |..+ ..+..+|+.++ .|+.-..
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~-------~~~~~~~~~sp~~~~~~v~~-~~~~-----g~v~ald~~tG~~~W~~~~~-- 219 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVT-------PALTLRGSASPVIADGGVLV-GFAG-----GKLVALDLQTGQPLWEQRVA-- 219 (377)
T ss_pred CeEEEEEcCCCceeeEEccCC-------CceeecCCCCCEEECCEEEE-ECCC-----CEEEEEEccCCCEeeeeccc--
Confidence 35888998866 47653311 00011222334555665554 4322 25889998776 4754321
Q ss_pred CCCCCC-------cccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc--eEEeccCCCCCCCCcCceEEEeCCEEEE
Q 011542 122 DLPSPR-------DFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPPPRCGHTATMVEKRLLI 192 (483)
Q Consensus 122 ~~p~~r-------~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~i~~~~~~p~~r~~~~~~~~~~~lyv 192 (483)
.|... ...+..++.++.+|+... ...+++||+.+++ |+.-. . ...+.+..++++|+
T Consensus 220 -~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~------~g~l~a~d~~tG~~~W~~~~-----~---~~~~p~~~~~~vyv 284 (377)
T TIGR03300 220 -LPKGRTELERLVDVDGDPVVDGGQVYAVSY------QGRVAALDLRSGRVLWKRDA-----S---SYQGPAVDDNRLYV 284 (377)
T ss_pred -cCCCCCchhhhhccCCccEEECCEEEEEEc------CCEEEEEECCCCcEEEeecc-----C---CccCceEeCCEEEE
Confidence 11111 011222333557877542 2358999998764 76431 1 11233456888888
Q ss_pred EccCCCCCCcccceecccccccccCCCC--CeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEE
Q 011542 193 YGGRGGGGPIMGDLWALKGLIEEENETP--GWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTI 270 (483)
Q Consensus 193 ~GG~~~~~~~~~d~~~l~~~~~yd~~~~--~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~ 270 (483)
.... ..+..+|..+. .|+.... ..+...+.++.++.+|+... ...++
T Consensus 285 ~~~~-------------G~l~~~d~~tG~~~W~~~~~-----~~~~~ssp~i~g~~l~~~~~-------------~G~l~ 333 (377)
T TIGR03300 285 TDAD-------------GVVVALDRRSGSELWKNDEL-----KYRQLTAPAVVGGYLVVGDF-------------EGYLH 333 (377)
T ss_pred ECCC-------------CeEEEEECCCCcEEEccccc-----cCCccccCEEECCEEEEEeC-------------CCEEE
Confidence 6521 22334466544 4654221 11122233456777776421 13488
Q ss_pred EEEcCCCc--eEEccCCCCCCCCCcceEEEEECCEEEEEc
Q 011542 271 ILDRLSAQ--WKRLPIGNEPPPARAYHSMTCLGSLYLLFG 308 (483)
Q Consensus 271 ~yd~~~~~--W~~v~~~~~~p~~R~~~~~~~~~~~i~v~G 308 (483)
.+|..+.+ |+. +.. ......+.++.+++||+.+
T Consensus 334 ~~d~~tG~~~~~~-~~~----~~~~~~sp~~~~~~l~v~~ 368 (377)
T TIGR03300 334 WLSREDGSFVARL-KTD----GSGIASPPVVVGDGLLVQT 368 (377)
T ss_pred EEECCCCCEEEEE-EcC----CCccccCCEEECCEEEEEe
Confidence 88876543 422 211 1123445567788877554
No 62
>PRK13684 Ycf48-like protein; Provisional
Probab=95.55 E-value=2.3 Score=42.18 Aligned_cols=182 Identities=11% Similarity=0.104 Sum_probs=92.1
Q ss_pred EEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccE
Q 011542 25 AVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDF 104 (483)
Q Consensus 25 ~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~ 104 (483)
...++++.+++.|.. ..+++=+-.-.+|..+.. +..-..+.+....+..|+..|..+ .+
T Consensus 137 i~~~~~~~~~~~g~~------G~i~~S~DgG~tW~~~~~----------~~~g~~~~i~~~~~g~~v~~g~~G-----~i 195 (334)
T PRK13684 137 ITALGPGTAEMATNV------GAIYRTTDGGKNWEALVE----------DAAGVVRNLRRSPDGKYVAVSSRG-----NF 195 (334)
T ss_pred EEEECCCcceeeecc------ceEEEECCCCCCceeCcC----------CCcceEEEEEECCCCeEEEEeCCc-----eE
Confidence 444555566666642 234444444579998752 122234455554444444444332 13
Q ss_pred EEE-ECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEE-CC-CCceEEeccCCCCCCCCc-C
Q 011542 105 WVL-DTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLD-TI-SLEWMQLPVTGSVPPPRC-G 180 (483)
Q Consensus 105 ~~y-d~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd-~~-t~~W~~i~~~~~~p~~r~-~ 180 (483)
+.- |....+|..+. .+..+..++++...++.++++|.. + ...+. .+ -.+|+.+.. +...... -
T Consensus 196 ~~s~~~gg~tW~~~~----~~~~~~l~~i~~~~~g~~~~vg~~-G------~~~~~s~d~G~sW~~~~~--~~~~~~~~l 262 (334)
T PRK13684 196 YSTWEPGQTAWTPHQ----RNSSRRLQSMGFQPDGNLWMLARG-G------QIRFNDPDDLESWSKPII--PEITNGYGY 262 (334)
T ss_pred EEEcCCCCCeEEEee----CCCcccceeeeEcCCCCEEEEecC-C------EEEEccCCCCCccccccC--Cccccccce
Confidence 322 34446799886 345555566666666788888743 2 22232 22 248997641 1111112 2
Q ss_pred ceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCC
Q 011542 181 HTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHG 254 (483)
Q Consensus 181 ~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~ 254 (483)
++++.. ++.+|+.|....- + .-.....+|+.+......|. -....+...+++.|+.|...
T Consensus 263 ~~v~~~~~~~~~~~G~~G~v---------~----~S~d~G~tW~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~~G 323 (334)
T PRK13684 263 LDLAYRTPGEIWAGGGNGTL---------L----VSKDGGKTWEKDPVGEEVPS-NFYKIVFLDPEKGFVLGQRG 323 (334)
T ss_pred eeEEEcCCCCEEEEcCCCeE---------E----EeCCCCCCCeECCcCCCCCc-ceEEEEEeCCCceEEECCCc
Confidence 333333 5688888764210 1 11334578998763222332 22223334577888888643
No 63
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.53 E-value=0.16 Score=48.71 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=69.1
Q ss_pred CCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCc-CCccEEEEECCCCceEEeccC--CCCCC
Q 011542 100 RLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK-WLSDVYVLDTISLEWMQLPVT--GSVPP 176 (483)
Q Consensus 100 ~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~i~~~--~~~p~ 176 (483)
....++.||+.+.+|..+.. . -.+. -.++....++++|+.|-..-.. ....+-.||..+.+|+.+... ..+|.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~--~-i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGN--G-ISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG 89 (281)
T ss_pred CCCEEEEEECCCCEeecCCC--C-ceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC
Confidence 46679999999999998763 1 1111 1233334456888888655443 466789999999999988742 23455
Q ss_pred CCcCceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEecc
Q 011542 177 PRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKL 227 (483)
Q Consensus 177 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~ 227 (483)
+......... .+.+++.|...... .-+..| +..+|..+..
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g~---------~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANGS---------TFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCCC---------ceEEEE--cCCceEeccc
Confidence 5322222222 34788877752221 233444 5678998873
No 64
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.19 E-value=1.1 Score=44.78 Aligned_cols=144 Identities=13% Similarity=0.092 Sum_probs=78.6
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~y 107 (483)
...-.+++.+|+++.- .++..|-.++. .+..... --.|-.....+..|....+++|+.. -++.|
T Consensus 222 Hp~~plllvaG~d~~l---rifqvDGk~N~--~lqS~~l------~~fPi~~a~f~p~G~~~i~~s~rrk-----y~ysy 285 (514)
T KOG2055|consen 222 HPTAPLLLVAGLDGTL---RIFQVDGKVNP--KLQSIHL------EKFPIQKAEFAPNGHSVIFTSGRRK-----YLYSY 285 (514)
T ss_pred cCCCceEEEecCCCcE---EEEEecCccCh--hheeeee------ccCccceeeecCCCceEEEecccce-----EEEEe
Confidence 3445699999987642 35555555554 2221110 0112112112222333777776542 38999
Q ss_pred ECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEeC
Q 011542 108 DTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVE 187 (483)
Q Consensus 108 d~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~ 187 (483)
|..+.+-.++.+...++. +..+...+-.++.++++-|..+ -++.+...|+.|-.-- .++......+....+
T Consensus 286 Dle~ak~~k~~~~~g~e~-~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s~---KieG~v~~~~fsSds 356 (514)
T KOG2055|consen 286 DLETAKVTKLKPPYGVEE-KSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITSF---KIEGVVSDFTFSSDS 356 (514)
T ss_pred eccccccccccCCCCccc-chhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhhee---eeccEEeeEEEecCC
Confidence 999999988886555552 2222233323445667766544 3677788888875322 333333334444445
Q ss_pred CEEEEEccC
Q 011542 188 KRLLIYGGR 196 (483)
Q Consensus 188 ~~lyv~GG~ 196 (483)
..|++.||.
T Consensus 357 k~l~~~~~~ 365 (514)
T KOG2055|consen 357 KELLASGGT 365 (514)
T ss_pred cEEEEEcCC
Confidence 688888875
No 65
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.12 E-value=0.81 Score=45.52 Aligned_cols=117 Identities=20% Similarity=0.251 Sum_probs=71.8
Q ss_pred ECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCc-----cEEEE-
Q 011542 85 IDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLS-----DVYVL- 158 (483)
Q Consensus 85 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~-----~v~~y- 158 (483)
.+++|+..+.. ....+||+.+..-...+. ++.+.....++.+++ +||++.......... .++.+
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~---l~~pk~~pisv~VG~-~LY~m~~~~~~~~~~~~~~~~FE~l~ 144 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPR---LHSPKRCPISVSVGD-KLYAMDRSPFPEPAGRPDFPCFEALV 144 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCC---CCCCCcceEEEEeCC-eEEEeeccCccccccCccceeEEEec
Confidence 48899988654 237899999987775553 666666666677777 699998764332111 44444
Q ss_pred -E--------CCCCceEEeccCCCCCCCCcC-------ceEEEe-CCEEEE-EccCCCCCCcccceecccccccccCCCC
Q 011542 159 -D--------TISLEWMQLPVTGSVPPPRCG-------HTATMV-EKRLLI-YGGRGGGGPIMGDLWALKGLIEEENETP 220 (483)
Q Consensus 159 -d--------~~t~~W~~i~~~~~~p~~r~~-------~~~~~~-~~~lyv-~GG~~~~~~~~~d~~~l~~~~~yd~~~~ 220 (483)
+ ...-.|+.++ ++|..+.. .+-+++ +..|+| .-|.. ...+.||+.+.
T Consensus 145 ~~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------------~GTysfDt~~~ 209 (342)
T PF07893_consen 145 YRPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------------WGTYSFDTESH 209 (342)
T ss_pred cccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc------------eEEEEEEcCCc
Confidence 3 2233677776 33333222 233344 567887 33321 13456799999
Q ss_pred CeEEec
Q 011542 221 GWTQLK 226 (483)
Q Consensus 221 ~W~~~~ 226 (483)
+|+.+-
T Consensus 210 ~W~~~G 215 (342)
T PF07893_consen 210 EWRKHG 215 (342)
T ss_pred ceeecc
Confidence 999985
No 66
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.78 E-value=1.6 Score=39.59 Aligned_cols=152 Identities=20% Similarity=0.261 Sum_probs=72.8
Q ss_pred EEEEECCEEEEEccccCCCCCccEEEEECCCCeE--EEeecC-CCCCCCCcccEEEEEC-CcEEEEEecCCCCcCCccEE
Q 011542 81 IAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQW--SELTSF-GDLPSPRDFAAASAIG-NRKIVMYGGWDGKKWLSDVY 156 (483)
Q Consensus 81 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W--~~l~~~-~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~v~ 156 (483)
+++...+++|+|-|. .+|+++...... ..+... ..+|.. .. ++.... ++++|+|-|. ..|
T Consensus 11 A~~~~~g~~y~FkG~-------~~w~~~~~~~~~~p~~I~~~w~~~p~~-ID-Aa~~~~~~~~~yfFkg~-------~yw 74 (194)
T cd00094 11 AVTTLRGELYFFKGR-------YFWRLSPGKPPGSPFLISSFWPSLPSP-VD-AAFERPDTGKIYFFKGD-------KYW 74 (194)
T ss_pred eEEEeCCEEEEEeCC-------EEEEEeCCCCCCCCeEhhhhCCCCCCC-cc-EEEEECCCCEEEEECCC-------EEE
Confidence 344456899999762 478887652211 122210 112322 22 222333 3689999652 477
Q ss_pred EEECCCCceEE---eccCCCCCC--CCcCceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEE-----e
Q 011542 157 VLDTISLEWMQ---LPVTGSVPP--PRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQ-----L 225 (483)
Q Consensus 157 ~yd~~t~~W~~---i~~~~~~p~--~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~-----~ 225 (483)
+|+..+..+.- +..- ..|. .....+.... ++++|+|.|. ..+.||...++... +
T Consensus 75 ~~~~~~~~~~~Pk~i~~~-~~~~~~~~iDAA~~~~~~~~~yfFkg~--------------~y~ry~~~~~~v~~~yP~~i 139 (194)
T cd00094 75 VYTGKNLEPGYPKPISDL-GFPPTVKQIDAALRWPDNGKTYFFKGD--------------KYWRYDEKTQKMDPGYPKLI 139 (194)
T ss_pred EEcCcccccCCCcchhhc-CCCCCCCCccEEEEEcCCCEEEEEeCC--------------EEEEEeCCCccccCCCCcch
Confidence 88765422211 1100 1111 1222222222 5799999883 23334443332210 1
Q ss_pred ccC-CCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCc
Q 011542 226 KLP-GQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (483)
Q Consensus 226 ~~~-g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (483)
... ..+|.. ...+....++++|+|-| +..|+||..+.+
T Consensus 140 ~~~w~g~p~~-idaa~~~~~~~~yfF~g--------------~~y~~~d~~~~~ 178 (194)
T cd00094 140 ETDFPGVPDK-VDAAFRWLDGYYYFFKG--------------DQYWRFDPRSKE 178 (194)
T ss_pred hhcCCCcCCC-cceeEEeCCCcEEEEEC--------------CEEEEEeCccce
Confidence 000 012322 22233334488999987 458999987665
No 67
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.44 E-value=6.5 Score=39.99 Aligned_cols=161 Identities=17% Similarity=0.161 Sum_probs=82.2
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCc
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
+++.+++....+. ...++++|+.++.-..+.. .+... .+.+...++ .|++....++ ..+++.+|+.++.
T Consensus 200 dg~~la~~~~~~~--~~~i~v~d~~~g~~~~~~~---~~~~~--~~~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~ 269 (417)
T TIGR02800 200 DGQKLAYVSFESG--KPEIYVQDLATGQREKVAS---FPGMN--GAPAFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQ 269 (417)
T ss_pred CCCEEEEEEcCCC--CcEEEEEECCCCCEEEeec---CCCCc--cceEECCCCCEEEEEECCCC---CccEEEEECCCCC
Confidence 4444444433322 2569999999887666653 22211 122233343 5655443222 3579999999988
Q ss_pred eEEeccCCCCCCCCcCceEEEeCC-EEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEE-E
Q 011542 165 WMQLPVTGSVPPPRCGHTATMVEK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTIT-S 242 (483)
Q Consensus 165 W~~i~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~-~ 242 (483)
.+.+... ...... ....-++ +|++.....+. ..++.+|..+..+..+...+ ....... .
T Consensus 270 ~~~l~~~---~~~~~~-~~~s~dg~~l~~~s~~~g~----------~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~s 330 (417)
T TIGR02800 270 LTRLTNG---PGIDTE-PSWSPDGKSIAFTSDRGGS----------PQIYMMDADGGEVRRLTFRG-----GYNASPSWS 330 (417)
T ss_pred EEECCCC---CCCCCC-EEECCCCCEEEEEECCCCC----------ceEEEEECCCCCEEEeecCC-----CCccCeEEC
Confidence 8877522 111111 1111234 55554332211 23455677777777665321 1111222 2
Q ss_pred eCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccC
Q 011542 243 GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPI 284 (483)
Q Consensus 243 ~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (483)
-+++.+++...... ...++++|+.+..+..+..
T Consensus 331 pdg~~i~~~~~~~~---------~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 331 PDGDLIAFVHREGG---------GFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred CCCCEEEEEEccCC---------ceEEEEEeCCCCCeEEccC
Confidence 34455555543321 2468999998877776654
No 68
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.35 E-value=7.4 Score=40.30 Aligned_cols=146 Identities=13% Similarity=0.143 Sum_probs=76.9
Q ss_pred cceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCC
Q 011542 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPS 125 (483)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~ 125 (483)
..+|++|+.+++-..+.... ..-...+..-.+.+|++....++ ..++|.+|..+++..++....
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~---------g~~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~---- 305 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFP---------GINGAPRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRHR---- 305 (448)
T ss_pred cEEEEEECCCCCeEEecCCC---------CCcCCeeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccCC----
Confidence 57999999888776664321 11111111123445655433222 247999999999888776311
Q ss_pred CCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe-CC-EEEEEccCCCCCCc
Q 011542 126 PRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV-EK-RLLIYGGRGGGGPI 202 (483)
Q Consensus 126 ~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~ 202 (483)
.. ....+...|+ .|++.....+ ...+|.+|..+++++.+...+.. ....... ++ .|++.+ .....
T Consensus 306 ~~-~~~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~-----~~~~~~SpDG~~l~~~~-~~~g~-- 373 (448)
T PRK04792 306 AI-DTEPSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQ-----NLGGSITPDGRSMIMVN-RTNGK-- 373 (448)
T ss_pred CC-ccceEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCC-----CcCeeECCCCCEEEEEE-ecCCc--
Confidence 11 1112222333 4555443222 25799999999999988532211 1112222 44 555543 22211
Q ss_pred ccceecccccccccCCCCCeEEec
Q 011542 203 MGDLWALKGLIEEENETPGWTQLK 226 (483)
Q Consensus 203 ~~d~~~l~~~~~yd~~~~~W~~~~ 226 (483)
..++.+|+.+.....+.
T Consensus 374 -------~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 374 -------FNIARQDLETGAMQVLT 390 (448)
T ss_pred -------eEEEEEECCCCCeEEcc
Confidence 23455688888777665
No 69
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.94 E-value=8.2 Score=39.25 Aligned_cols=146 Identities=19% Similarity=0.203 Sum_probs=76.3
Q ss_pred cceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE-ECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCC
Q 011542 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (483)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p 124 (483)
..++++|+.+++-..+... +..... .... .+..|++.....+ ..+++.+|..++...++....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~---------~~~~~~-~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~--- 277 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASF---------PGMNGA-PAFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGP--- 277 (417)
T ss_pred cEEEEEECCCCCEEEeecC---------CCCccc-eEECCCCCEEEEEECCCC---CccEEEEECCCCCEEECCCCC---
Confidence 5688999988876665422 111111 1222 2345655433222 246999999988877775311
Q ss_pred CCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe-CCEEEEEccCCCCCCc
Q 011542 125 SPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPI 202 (483)
Q Consensus 125 ~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~ 202 (483)
... .......++ +|++.....+ ...+|.+|..+.++..+...+ ......... +++.+++.......
T Consensus 278 ~~~--~~~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~~~-- 345 (417)
T TIGR02800 278 GID--TEPSWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREGGG-- 345 (417)
T ss_pred CCC--CCEEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccCCc--
Confidence 111 111122233 4555443322 247999999999888776322 111222222 45555555433211
Q ss_pred ccceecccccccccCCCCCeEEec
Q 011542 203 MGDLWALKGLIEEENETPGWTQLK 226 (483)
Q Consensus 203 ~~d~~~l~~~~~yd~~~~~W~~~~ 226 (483)
..+..+|+.+..++.+.
T Consensus 346 -------~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 346 -------FNIAVMDLDGGGERVLT 362 (417)
T ss_pred -------eEEEEEeCCCCCeEEcc
Confidence 34566788886666554
No 70
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.85 E-value=1.6 Score=41.34 Aligned_cols=107 Identities=19% Similarity=0.213 Sum_probs=74.7
Q ss_pred CCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccc
Q 011542 136 GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEE 215 (483)
Q Consensus 136 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~y 215 (483)
.++.+|.--|..+ .+.+..||+.|++-.+.. ++|...++-+++.++++||..--.. ....+|
T Consensus 54 ~~g~LyESTG~yG---~S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk~------------~~~f~y 115 (264)
T PF05096_consen 54 DDGTLYESTGLYG---QSSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWKE------------GTGFVY 115 (264)
T ss_dssp ETTEEEEEECSTT---EEEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESSS------------SEEEEE
T ss_pred CCCEEEEeCCCCC---cEEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEecC------------CeEEEE
Confidence 6679999888765 467889999999877666 7888889999999999999986432 445678
Q ss_pred cCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCc
Q 011542 216 ENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (483)
Q Consensus 216 d~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (483)
|+++ .+.+. ..+.+..+-.+|..+..+++--|. +.++.+||.+-+
T Consensus 116 d~~t--l~~~~---~~~y~~EGWGLt~dg~~Li~SDGS-------------~~L~~~dP~~f~ 160 (264)
T PF05096_consen 116 DPNT--LKKIG---TFPYPGEGWGLTSDGKRLIMSDGS-------------SRLYFLDPETFK 160 (264)
T ss_dssp ETTT--TEEEE---EEE-SSS--EEEECSSCEEEE-SS-------------SEEEEE-TTT-S
T ss_pred cccc--ceEEE---EEecCCcceEEEcCCCEEEEECCc-------------cceEEECCcccc
Confidence 8765 45554 445556778888888899997773 568899987543
No 71
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.74 E-value=9.4 Score=39.29 Aligned_cols=183 Identities=14% Similarity=0.079 Sum_probs=92.2
Q ss_pred cceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCC
Q 011542 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (483)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p 124 (483)
..++++|..+++-..+.... . ........- +.+|++....++ ..+++++|+.++.-.++... .
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~---------g-~~~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~---~ 291 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFR---------G-INGAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNH---F 291 (433)
T ss_pred cEEEEEECCCCCEEEeccCC---------C-CccCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccC---C
Confidence 56899999888877665321 1 111112222 345554432222 24799999998887766531 1
Q ss_pred CCCcccEEEEECCcE-EEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe--CCEEEEEccCCCCCC
Q 011542 125 SPRDFAAASAIGNRK-IVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV--EKRLLIYGGRGGGGP 201 (483)
Q Consensus 125 ~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~ 201 (483)
. .....+...|++ |++.....+ ...+|.+|..+++.+.+...+ ......... ++.|++..+. ...
T Consensus 292 ~--~~~~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~-~~~- 359 (433)
T PRK04922 292 G--IDTEPTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHGS-GGQ- 359 (433)
T ss_pred C--CccceEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEECC-CCc-
Confidence 1 111222333444 444433322 246999999999988876322 122222332 3456555442 111
Q ss_pred cccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCc
Q 011542 202 IMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (483)
Q Consensus 202 ~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (483)
..+..+|+.+.....+... +. -... ...-+++.+++...... ...++.+|.....
T Consensus 360 --------~~I~v~d~~~g~~~~Lt~~---~~-~~~p-~~spdG~~i~~~s~~~g---------~~~L~~~~~~g~~ 414 (433)
T PRK04922 360 --------YRIAVMDLSTGSVRTLTPG---SL-DESP-SFAPNGSMVLYATREGG---------RGVLAAVSTDGRV 414 (433)
T ss_pred --------eeEEEEECCCCCeEECCCC---CC-CCCc-eECCCCCEEEEEEecCC---------ceEEEEEECCCCc
Confidence 2455668888777766521 11 1111 22334554454433221 2458888876543
No 72
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=93.58 E-value=5.2 Score=36.18 Aligned_cols=141 Identities=13% Similarity=0.132 Sum_probs=68.0
Q ss_pred EEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCCCCc
Q 011542 25 AVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRRLG 102 (483)
Q Consensus 25 ~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~~~ 102 (483)
++... +.+|+|-| +.+|+++.............. -+..| ..--++... ++++|+|-|.
T Consensus 12 ~~~~~-g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~---w~~~p--~~IDAa~~~~~~~~~yfFkg~------- 71 (194)
T cd00094 12 VTTLR-GELYFFKG-------RYFWRLSPGKPPGSPFLISSF---WPSLP--SPVDAAFERPDTGKIYFFKGD------- 71 (194)
T ss_pred EEEeC-CEEEEEeC-------CEEEEEeCCCCCCCCeEhhhh---CCCCC--CCccEEEEECCCCEEEEECCC-------
Confidence 33344 78999977 457888876222222111111 01112 222233333 2789999662
Q ss_pred cEEEEECCCCeEE---EeecCCCCCC--CCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEecc---C---
Q 011542 103 DFWVLDTDIWQWS---ELTSFGDLPS--PRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPV---T--- 171 (483)
Q Consensus 103 ~~~~yd~~t~~W~---~l~~~~~~p~--~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~---~--- 171 (483)
.+|+|+..+..+. .+... ..|. .....+...-.++++|+|-| +..|+||..+++...--+ .
T Consensus 72 ~yw~~~~~~~~~~~Pk~i~~~-~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w 143 (194)
T cd00094 72 KYWVYTGKNLEPGYPKPISDL-GFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDF 143 (194)
T ss_pred EEEEEcCcccccCCCcchhhc-CCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcC
Confidence 4788886542221 11110 1221 22222222222569999987 357888876655421100 0
Q ss_pred CCCCCCCcCceEEEe-CCEEEEEcc
Q 011542 172 GSVPPPRCGHTATMV-EKRLLIYGG 195 (483)
Q Consensus 172 ~~~p~~r~~~~~~~~-~~~lyv~GG 195 (483)
..+|.. . .++... ++++|+|-|
T Consensus 144 ~g~p~~-i-daa~~~~~~~~yfF~g 166 (194)
T cd00094 144 PGVPDK-V-DAAFRWLDGYYYFFKG 166 (194)
T ss_pred CCcCCC-c-ceeEEeCCCcEEEEEC
Confidence 012221 2 233334 489999987
No 73
>PRK05137 tolB translocation protein TolB; Provisional
Probab=93.34 E-value=11 Score=38.81 Aligned_cols=146 Identities=16% Similarity=0.167 Sum_probs=73.4
Q ss_pred ccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcC
Q 011542 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (483)
Q Consensus 102 ~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~ 180 (483)
..++++|+.+++..++.. .+.... +...-.|+ +|++....++ ..++|.+|..++.-+++. ..+.. ..
T Consensus 226 ~~i~~~dl~~g~~~~l~~---~~g~~~--~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt---~~~~~-~~ 293 (435)
T PRK05137 226 PRVYLLDLETGQRELVGN---FPGMTF--APRFSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLT---DSPAI-DT 293 (435)
T ss_pred CEEEEEECCCCcEEEeec---CCCccc--CcEECCCCCEEEEEEecCC---CceEEEEECCCCceEEcc---CCCCc-cC
Confidence 579999999998877763 222211 22222334 5544433322 357999999999888775 22211 11
Q ss_pred ceEEEeCC-EEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCCCCCCC
Q 011542 181 HTATMVEK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGW 258 (483)
Q Consensus 181 ~~~~~~~~-~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~ 258 (483)
.....-++ +|++.....+. ..++.+|..+...+.+... .......... .+..|++... ...
T Consensus 294 ~~~~spDG~~i~f~s~~~g~----------~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~-~~~-- 356 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSGS----------PQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQ-GGG-- 356 (435)
T ss_pred ceeEcCCCCEEEEEECCCCC----------CeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEc-CCC--
Confidence 11112234 45443322111 2345557777776666521 1111111122 3445544332 111
Q ss_pred CcccceeeCcEEEEEcCCCceEEcc
Q 011542 259 LSRYDIYYNDTIILDRLSAQWKRLP 283 (483)
Q Consensus 259 ~~~~~~~~~~v~~yd~~~~~W~~v~ 283 (483)
...++++|+.......+.
T Consensus 357 -------~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 357 -------QFSIGVMKPDGSGERILT 374 (435)
T ss_pred -------ceEEEEEECCCCceEecc
Confidence 146899998776665554
No 74
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.32 E-value=7.1 Score=36.56 Aligned_cols=164 Identities=11% Similarity=0.053 Sum_probs=86.7
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccC-CCCC--ccEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFG-SRRL--GDFW 105 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~-~~~~--~~~~ 105 (483)
.++.+|+... ..+.++|+.++++..+..... ...+..+..-.++.-+++||+---... .... ..++
T Consensus 50 ~~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~----~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~ 118 (246)
T PF08450_consen 50 PDGRLYVADS-------GGIAVVDPDTGKVTVLADLPD----GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVY 118 (246)
T ss_dssp TTSEEEEEET-------TCEEEEETTTTEEEEEEEEET----TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEE
T ss_pred cCCEEEEEEc-------CceEEEecCCCcEEEEeeccC----CCcccCCCceEEEcCCCCEEEEecCCCccccccccceE
Confidence 5677877664 235677999999998876521 011334444444444678777532211 1112 5699
Q ss_pred EEECCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCc--eEEeccCCCCCCCC-cCc
Q 011542 106 VLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPPPR-CGH 181 (483)
Q Consensus 106 ~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~i~~~~~~p~~r-~~~ 181 (483)
++++. ++...+.. .+ ..-..++...++ .+|+.- .....+++|++.... +.....-...+... .--
T Consensus 119 ~~~~~-~~~~~~~~--~~---~~pNGi~~s~dg~~lyv~d-----s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pD 187 (246)
T PF08450_consen 119 RIDPD-GKVTVVAD--GL---GFPNGIAFSPDGKTLYVAD-----SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPD 187 (246)
T ss_dssp EEETT-SEEEEEEE--EE---SSEEEEEEETTSSEEEEEE-----TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEE
T ss_pred EECCC-CeEEEEec--Cc---ccccceEECCcchheeecc-----cccceeEEEeccccccceeeeeeEEEcCCCCcCCC
Confidence 99999 66666543 11 112344444444 577642 234568999886433 43322111222221 122
Q ss_pred eEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEec
Q 011542 182 TATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLK 226 (483)
Q Consensus 182 ~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~ 226 (483)
.+++- +++|||..-. -..+.+||++......+.
T Consensus 188 G~~vD~~G~l~va~~~------------~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 188 GLAVDSDGNLWVADWG------------GGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp EEEEBTTS-EEEEEET------------TTEEEEEETTSCEEEEEE
T ss_pred cceEcCCCCEEEEEcC------------CCEEEEECCCccEEEEEc
Confidence 33333 6799997321 155677899866566665
No 75
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.13 E-value=7.3 Score=39.74 Aligned_cols=207 Identities=14% Similarity=0.081 Sum_probs=106.4
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCC------C
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRR------L 101 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~------~ 101 (483)
.|++.++++=-.++.....+.++|+.+++...-. .+.++... ++-. ++..+++........ -
T Consensus 133 pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~----------i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 133 PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG----------IENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE----------EEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred CCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc----------ccccccce-EEEeCCCCEEEEEEeCcccccccCCCC
Confidence 4566777765545555667999999998543321 11122222 3333 445555555544322 5
Q ss_pred ccEEEEECCCCeEE--EeecCCCCCCCCc-ccEEEEECCcEEEEEecCCCCcCCccEEEEECCCC-----ceEEeccCCC
Q 011542 102 GDFWVLDTDIWQWS--ELTSFGDLPSPRD-FAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL-----EWMQLPVTGS 173 (483)
Q Consensus 102 ~~~~~yd~~t~~W~--~l~~~~~~p~~r~-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~-----~W~~i~~~~~ 173 (483)
..+++...-+..-. .+-. .+.... ...+..-.+++..++.-..... .+.++.+|.... .|..+. .
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe---~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~---~ 274 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFE---EPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLS---P 274 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC----TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEE---E
T ss_pred cEEEEEECCCChHhCeeEEe---ecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEe---C
Confidence 57888888766433 2221 222222 2233333444433333222222 588999999875 888875 2
Q ss_pred CCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCC---eEEeccCCCCCCCCeeeEEEEeCCEEEEE
Q 011542 174 VPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPG---WTQLKLPGQAPSSRCGHTITSGGHYLLLF 250 (483)
Q Consensus 174 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~---W~~~~~~g~~p~~r~~~~~~~~~~~i~v~ 250 (483)
...-..+.+...++.+|+........ ..+..+++.... |..+-. +......-..+...++.|++.
T Consensus 275 -~~~~~~~~v~~~~~~~yi~Tn~~a~~---------~~l~~~~l~~~~~~~~~~~l~--~~~~~~~l~~~~~~~~~Lvl~ 342 (414)
T PF02897_consen 275 -REDGVEYYVDHHGDRLYILTNDDAPN---------GRLVAVDLADPSPAEWWTVLI--PEDEDVSLEDVSLFKDYLVLS 342 (414)
T ss_dssp -SSSS-EEEEEEETTEEEEEE-TT-TT----------EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEEETTEEEEE
T ss_pred -CCCceEEEEEccCCEEEEeeCCCCCC---------cEEEEecccccccccceeEEc--CCCCceeEEEEEEECCEEEEE
Confidence 22222233444588999987643321 223334555443 664331 112222333445678888876
Q ss_pred cCCCCCCCCcccceeeCcEEEEEcC
Q 011542 251 GGHGTGGWLSRYDIYYNDTIILDRL 275 (483)
Q Consensus 251 GG~~~~~~~~~~~~~~~~v~~yd~~ 275 (483)
-=.+ ....+.++|+.
T Consensus 343 ~~~~----------~~~~l~v~~~~ 357 (414)
T PF02897_consen 343 YREN----------GSSRLRVYDLD 357 (414)
T ss_dssp EEET----------TEEEEEEEETT
T ss_pred EEEC----------CccEEEEEECC
Confidence 5322 34679999988
No 76
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.01 E-value=7.4 Score=37.21 Aligned_cols=160 Identities=21% Similarity=0.196 Sum_probs=85.4
Q ss_pred CCCCcc---eeEEEECCcEEEEEcccCC-----------------CccccceEEEEcCCCcEEeeeecCCCCCCCCCCCC
Q 011542 17 PQPRSG---HSAVNIGKSKVVVFGGLVD-----------------KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGP 76 (483)
Q Consensus 17 p~~R~~---h~~~~~~~~~l~v~GG~~~-----------------~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~ 76 (483)
|.||+| |.++..-|+ ...||||-- ....+.++.||.++++=+.+=..+ -.-+..
T Consensus 30 ~~P~SGGDTYNAV~~vDd-~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkes-----ih~~~~ 103 (339)
T PF09910_consen 30 PPPTSGGDTYNAVEWVDD-FIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKES-----IHDKTK 103 (339)
T ss_pred CCCCCCCccceeeeeecc-eEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecc-----cCCccc
Confidence 456655 667765544 555788741 123567999999988633332110 011111
Q ss_pred cceeEE-EE---ECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCC
Q 011542 77 RAFHIA-VA---IDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWL 152 (483)
Q Consensus 77 R~~h~~-~~---~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~ 152 (483)
-++=.+ .+ .+++|++.-+ ++.. ---+|..|..++.=+.+.. -|... . +.+.|-.+|-+ ..-..-.
T Consensus 104 WaGEVSdIlYdP~~D~LLlAR~-DGh~-nLGvy~ldr~~g~~~~L~~---~ps~K---G-~~~~D~a~F~i--~~~~~g~ 172 (339)
T PF09910_consen 104 WAGEVSDILYDPYEDRLLLARA-DGHA-NLGVYSLDRRTGKAEKLSS---NPSLK---G-TLVHDYACFGI--NNFHKGV 172 (339)
T ss_pred cccchhheeeCCCcCEEEEEec-CCcc-eeeeEEEcccCCceeeccC---CCCcC---c-eEeeeeEEEec--cccccCC
Confidence 111111 11 2567776532 2211 1247888988888887764 33331 1 23333233322 2233457
Q ss_pred ccEEEEECCCCce--EEecc----CCCCCCCCcCceEEEeCCEEEEE
Q 011542 153 SDVYVLDTISLEW--MQLPV----TGSVPPPRCGHTATMVEKRLLIY 193 (483)
Q Consensus 153 ~~v~~yd~~t~~W--~~i~~----~~~~p~~r~~~~~~~~~~~lyv~ 193 (483)
+.+.+||+.+++| +.... ++.....|....++...+++|.|
T Consensus 173 ~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 173 SGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred ceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 8899999999999 44432 23333345556667777776665
No 77
>PRK04792 tolB translocation protein TolB; Provisional
Probab=92.88 E-value=13 Score=38.47 Aligned_cols=147 Identities=17% Similarity=0.246 Sum_probs=78.4
Q ss_pred ccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcC
Q 011542 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (483)
Q Consensus 102 ~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~ 180 (483)
..+|++|+.+++-..+.. .+... .+.+...|+ .|++....++ ..++|.+|..+++.+++... .. ..
T Consensus 242 ~~L~~~dl~tg~~~~lt~---~~g~~--~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~---~~--~~ 308 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTS---FPGIN--GAPRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRH---RA--ID 308 (448)
T ss_pred cEEEEEECCCCCeEEecC---CCCCc--CCeeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccC---CC--Cc
Confidence 479999999887766653 22211 122222333 5655543332 35799999999998887621 11 11
Q ss_pred ceEEEe-CC-EEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCC
Q 011542 181 HTATMV-EK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGW 258 (483)
Q Consensus 181 ~~~~~~-~~-~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 258 (483)
...... ++ .|++.....+. ..++.+|+++.+++.+...+... ...+....++.|++.+ ....
T Consensus 309 ~~p~wSpDG~~I~f~s~~~g~----------~~Iy~~dl~~g~~~~Lt~~g~~~---~~~~~SpDG~~l~~~~-~~~g-- 372 (448)
T PRK04792 309 TEPSWHPDGKSLIFTSERGGK----------PQIYRVNLASGKVSRLTFEGEQN---LGGSITPDGRSMIMVN-RTNG-- 372 (448)
T ss_pred cceEECCCCCEEEEEECCCCC----------ceEEEEECCCCCEEEEecCCCCC---cCeeECCCCCEEEEEE-ecCC--
Confidence 112222 33 55554332211 34555688888888775322111 1111212334555443 2221
Q ss_pred CcccceeeCcEEEEEcCCCceEEccC
Q 011542 259 LSRYDIYYNDTIILDRLSAQWKRLPI 284 (483)
Q Consensus 259 ~~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (483)
...++++|+.+.....+..
T Consensus 373 -------~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 373 -------KFNIARQDLETGAMQVLTS 391 (448)
T ss_pred -------ceEEEEEECCCCCeEEccC
Confidence 2468999999888877654
No 78
>PRK05137 tolB translocation protein TolB; Provisional
Probab=92.86 E-value=13 Score=38.30 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=62.9
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE-ECCEEEEEccccCCCCCccEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~~iyv~GG~~~~~~~~~~~~y 107 (483)
.|++-++|....++ ...++++|+.+++...+.... .. ....... .+.+|++....++ ..++|++
T Consensus 211 pDG~~lay~s~~~g--~~~i~~~dl~~g~~~~l~~~~---------g~-~~~~~~SPDG~~la~~~~~~g---~~~Iy~~ 275 (435)
T PRK05137 211 PNRQEITYMSYANG--RPRVYLLDLETGQRELVGNFP---------GM-TFAPRFSPDGRKVVMSLSQGG---NTDIYTM 275 (435)
T ss_pred CCCCEEEEEEecCC--CCEEEEEECCCCcEEEeecCC---------Cc-ccCcEECCCCCEEEEEEecCC---CceEEEE
Confidence 44554444433222 267999999999887775321 11 1111222 2345544433222 2479999
Q ss_pred ECCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCceEEec
Q 011542 108 DTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLP 169 (483)
Q Consensus 108 d~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~ 169 (483)
|..++.-.++.. .+. . ........|+ .|++.....+ ...+|.+|..+...+.+.
T Consensus 276 d~~~~~~~~Lt~---~~~-~-~~~~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 276 DLRSGTTTRLTD---SPA-I-DTSPSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRIS 330 (435)
T ss_pred ECCCCceEEccC---CCC-c-cCceeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEee
Confidence 999988777753 111 1 1112222344 4443332222 347899999888888775
No 79
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.71 E-value=13 Score=38.06 Aligned_cols=146 Identities=15% Similarity=0.154 Sum_probs=77.3
Q ss_pred ccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcC
Q 011542 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (483)
Q Consensus 102 ~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~ 180 (483)
..++++|+.+++-..+.. .+. .........|+ +|++..-.++ ..++|++|+.+++.+++. ..+.. .
T Consensus 223 ~~l~~~~l~~g~~~~l~~---~~g--~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt---~~~~~--~ 289 (430)
T PRK00178 223 PRIFVQNLDTGRREQITN---FEG--LNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVT---NHPAI--D 289 (430)
T ss_pred CEEEEEECCCCCEEEccC---CCC--CcCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcc---cCCCC--c
Confidence 469999999988777653 211 11122222343 4544332222 257999999999988876 21111 1
Q ss_pred ceEEEe-C-CEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCCCCCC
Q 011542 181 HTATMV-E-KRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGG 257 (483)
Q Consensus 181 ~~~~~~-~-~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~ 257 (483)
...... + ++|++.....+. ..++.+|+.+..++.+...+ ......... .++.|++......
T Consensus 290 ~~~~~spDg~~i~f~s~~~g~----------~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~~~~-- 353 (430)
T PRK00178 290 TEPFWGKDGRTLYFTSDRGGK----------PQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVHRQDG-- 353 (430)
T ss_pred CCeEECCCCCEEEEEECCCCC----------ceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEEccCC--
Confidence 112222 3 355554322211 23555688888887775322 111111222 3445555433211
Q ss_pred CCcccceeeCcEEEEEcCCCceEEccC
Q 011542 258 WLSRYDIYYNDTIILDRLSAQWKRLPI 284 (483)
Q Consensus 258 ~~~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (483)
...++++|+.+...+.+..
T Consensus 354 --------~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 354 --------NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred --------ceEEEEEECCCCCEEEccC
Confidence 1359999999988887754
No 80
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=92.42 E-value=9.5 Score=35.70 Aligned_cols=268 Identities=13% Similarity=0.143 Sum_probs=107.8
Q ss_pred cEEE--EEcccC-CCccccceEEEEcCC-CcEEeeeecCCCCCCCCCCC-CcceeEEEEECCEEEEEccc--cCCCCCcc
Q 011542 31 SKVV--VFGGLV-DKRFLSDVVVYDIDN-KLWFQPECTGNGSNGQVGPG-PRAFHIAVAIDCHMFIFGGR--FGSRRLGD 103 (483)
Q Consensus 31 ~~l~--v~GG~~-~~~~~~~~~~yd~~~-~~W~~~~~~~~~~~~~~~p~-~R~~h~~~~~~~~iyv~GG~--~~~~~~~~ 103 (483)
+.|| .++|.. +-..+.-.|+=+.+. ++|+...-.... -++-|. .--|.+|-+++|++|++=-. -....+..
T Consensus 26 ~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~--H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~km~~ 103 (367)
T PF12217_consen 26 NVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDL--HPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNKMVR 103 (367)
T ss_dssp TEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS-----TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--EEE
T ss_pred CeeecccccccccCccceEEEEEEecCCCCcccCchhhhhc--CCCCCccceeeeeeeeecceeeEEEeehhhhhhhhhh
Confidence 4555 234432 333444556666554 578775544221 011121 22355678899999987322 12233334
Q ss_pred EEEEE---CCCCeEEEeecCCCCCC-------CCcccEEEEECCcEEEEEecCCCCcCCccE--EEEE----CCCCc-eE
Q 011542 104 FWVLD---TDIWQWSELTSFGDLPS-------PRDFAAASAIGNRKIVMYGGWDGKKWLSDV--YVLD----TISLE-WM 166 (483)
Q Consensus 104 ~~~yd---~~t~~W~~l~~~~~~p~-------~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v--~~yd----~~t~~-W~ 166 (483)
.+.|| ...+.|..-.. +..|. ...-|+.|.+.+ .=|.+|=.+++..-..+ ..|. ..... =+
T Consensus 104 ~~Lw~RpMF~~spW~~teL-~~~~~~~~a~~~vTe~HSFa~i~~-~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr 181 (367)
T PF12217_consen 104 AELWSRPMFHDSPWRITEL-GTIASFTSAGVAVTELHSFATIDD-NQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRR 181 (367)
T ss_dssp EEEEEEE-STTS--EEEEE-ES-TT--------SEEEEEEE-SS-S-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEE
T ss_pred hhhhcccccccCCceeeec-ccccccccccceeeeeeeeeEecC-CceeEEeccCCCCcceeeEEEecccccCCcceeee
Confidence 45555 36778865321 12333 455688888866 56688865554322222 2221 11111 12
Q ss_pred EeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCE
Q 011542 167 QLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHY 246 (483)
Q Consensus 167 ~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~ 246 (483)
.++ ......-...++-..++.||+.--.+-....-+-+ ..-+.....|+.+..+.. .--...-.+..++.
T Consensus 182 ~i~--sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L------~rs~d~G~~w~slrfp~n--vHhtnlPFakvgD~ 251 (367)
T PF12217_consen 182 IIP--SEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSL------HRSDDNGQNWSSLRFPNN--VHHTNLPFAKVGDV 251 (367)
T ss_dssp E----GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EE------EEESSTTSS-EEEE-TT-----SS---EEEETTE
T ss_pred ech--hhhccccccchhhhhCCEEEEEEcCcCCCCCccee------eeecccCCchhhcccccc--ccccCCCceeeCCE
Confidence 222 01222223344555699999986332222222223 333677889999985311 11122234568999
Q ss_pred EEEEcCCCCCC------CCcccceeeCcEEEE-------EcCCCceEEccCC---CCCCCCCcceEEEE-ECCEEE-EEc
Q 011542 247 LLLFGGHGTGG------WLSRYDIYYNDTIIL-------DRLSAQWKRLPIG---NEPPPARAYHSMTC-LGSLYL-LFG 308 (483)
Q Consensus 247 i~v~GG~~~~~------~~~~~~~~~~~v~~y-------d~~~~~W~~v~~~---~~~p~~R~~~~~~~-~~~~i~-v~G 308 (483)
||+||.....+ ...|+.......... .++.-+|.-+... +.....-.+-++++ -++.|| +||
T Consensus 252 l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FG 331 (367)
T PF12217_consen 252 LYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFG 331 (367)
T ss_dssp EEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEE
T ss_pred EEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEec
Confidence 99998543211 122333333333333 3344455555432 11122233334444 366654 899
Q ss_pred cCCC
Q 011542 309 GFDG 312 (483)
Q Consensus 309 G~~~ 312 (483)
|.+-
T Consensus 332 gED~ 335 (367)
T PF12217_consen 332 GEDF 335 (367)
T ss_dssp EB-S
T ss_pred Cccc
Confidence 9653
No 81
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.41 E-value=14 Score=37.78 Aligned_cols=145 Identities=12% Similarity=0.073 Sum_probs=76.6
Q ss_pred cceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE-ECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCC
Q 011542 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (483)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p 124 (483)
..+|++|+.+++-..+..... . ....... .+++|++.....+ ..++|++|+.++...++.. .+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g-------~---~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~---~~ 286 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEG-------L---NGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTN---HP 286 (430)
T ss_pred CEEEEEECCCCCEEEccCCCC-------C---cCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEccc---CC
Confidence 479999999888777653210 0 0111122 2345544322222 1479999999998887763 11
Q ss_pred CCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe--CCEEEEEccCCCCCC
Q 011542 125 SPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV--EKRLLIYGGRGGGGP 201 (483)
Q Consensus 125 ~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~ 201 (483)
.. ........++ .|++.....+ ...+|.+|+.+++++++...+ ......... ++.|++..... ..
T Consensus 287 -~~-~~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~~~-~~- 354 (430)
T PRK00178 287 -AI-DTEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVMVHRQD-GN- 354 (430)
T ss_pred -CC-cCCeEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEEEEccC-Cc-
Confidence 11 1112222233 5555433222 347999999999998875221 111122222 34555544321 11
Q ss_pred cccceecccccccccCCCCCeEEec
Q 011542 202 IMGDLWALKGLIEEENETPGWTQLK 226 (483)
Q Consensus 202 ~~~d~~~l~~~~~yd~~~~~W~~~~ 226 (483)
..+..+|+.+...+.+.
T Consensus 355 --------~~l~~~dl~tg~~~~lt 371 (430)
T PRK00178 355 --------FHVAAQDLQRGSVRILT 371 (430)
T ss_pred --------eEEEEEECCCCCEEEcc
Confidence 23556788888877765
No 82
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.11 E-value=4.6 Score=38.20 Aligned_cols=157 Identities=15% Similarity=0.218 Sum_probs=90.1
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLD 108 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd 108 (483)
.++.+|.--|.-+ .+.+..||+.+++=.... ++|..-++=.++.++++||..== .....++||
T Consensus 54 ~~g~LyESTG~yG---~S~l~~~d~~tg~~~~~~---------~l~~~~FgEGit~~~d~l~qLTW-----k~~~~f~yd 116 (264)
T PF05096_consen 54 DDGTLYESTGLYG---QSSLRKVDLETGKVLQSV---------PLPPRYFGEGITILGDKLYQLTW-----KEGTGFVYD 116 (264)
T ss_dssp ETTEEEEEECSTT---EEEEEEEETTTSSEEEEE---------E-TTT--EEEEEEETTEEEEEES-----SSSEEEEEE
T ss_pred CCCEEEEeCCCCC---cEEEEEEECCCCcEEEEE---------ECCccccceeEEEECCEEEEEEe-----cCCeEEEEc
Confidence 5566666666544 367889999999865543 34566677788999999999832 123578999
Q ss_pred CCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEeCC
Q 011542 109 TDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK 188 (483)
Q Consensus 109 ~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~ 188 (483)
+.+- ..+.. .+.+..+-.+|..++ .+++--| .+.++.+||.+.+=..- ......+..+..+|.
T Consensus 117 ~~tl--~~~~~---~~y~~EGWGLt~dg~-~Li~SDG------S~~L~~~dP~~f~~~~~-----i~V~~~g~pv~~LNE 179 (264)
T PF05096_consen 117 PNTL--KKIGT---FPYPGEGWGLTSDGK-RLIMSDG------SSRLYFLDPETFKEVRT-----IQVTDNGRPVSNLNE 179 (264)
T ss_dssp TTTT--EEEEE---EE-SSS--EEEECSS-CEEEE-S------SSEEEEE-TTT-SEEEE-----EE-EETTEE---EEE
T ss_pred cccc--eEEEE---EecCCcceEEEcCCC-EEEEECC------ccceEEECCcccceEEE-----EEEEECCEECCCcEe
Confidence 9864 34432 334456777776544 7777655 56789999987643321 111111222222232
Q ss_pred EEEEEccCCCCCCcccceecccccccccCCCCCeEEe
Q 011542 189 RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQL 225 (483)
Q Consensus 189 ~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~ 225 (483)
-=| +.| .++..+|.-+.+.+.||+++.-...
T Consensus 180 LE~-i~G-----~IyANVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 180 LEY-ING-----KIYANVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp EEE-ETT-----EEEEEETTSSEEEEEETTT-BEEEE
T ss_pred EEE-EcC-----EEEEEeCCCCeEEEEeCCCCeEEEE
Confidence 223 233 3566677778888889999876543
No 83
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=91.87 E-value=2.9 Score=35.01 Aligned_cols=85 Identities=15% Similarity=0.217 Sum_probs=57.2
Q ss_pred CcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceeccccccccc
Q 011542 137 NRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEE 216 (483)
Q Consensus 137 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd 216 (483)
||-+|...-. .....+.+.+||+.+.+|+.+..............++-.+|+|-++.-........-++|.+. |
T Consensus 5 nGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLe-----D 78 (129)
T PF08268_consen 5 NGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLE-----D 78 (129)
T ss_pred CcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEee-----c
Confidence 5577776654 333466789999999999998732113345566677777999888765443322345778775 6
Q ss_pred CCCCCeEEecc
Q 011542 217 NETPGWTQLKL 227 (483)
Q Consensus 217 ~~~~~W~~~~~ 227 (483)
.+..+|++...
T Consensus 79 ~~k~~Wsk~~~ 89 (129)
T PF08268_consen 79 YEKQEWSKKHI 89 (129)
T ss_pred cccceEEEEEE
Confidence 66789997753
No 84
>PRK03629 tolB translocation protein TolB; Provisional
Probab=91.08 E-value=20 Score=36.81 Aligned_cols=169 Identities=12% Similarity=0.107 Sum_probs=83.6
Q ss_pred ccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcC
Q 011542 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (483)
Q Consensus 102 ~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~ 180 (483)
..++++|+.+++-..+.. .+.. ..+.....|+ +|++.....+ ..++|.+|+.+++.+++. ..... .
T Consensus 223 ~~i~i~dl~~G~~~~l~~---~~~~--~~~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt---~~~~~--~ 289 (429)
T PRK03629 223 SALVIQTLANGAVRQVAS---FPRH--NGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVT---DGRSN--N 289 (429)
T ss_pred cEEEEEECCCCCeEEccC---CCCC--cCCeEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEcc---CCCCC--c
Confidence 468999998887666653 2221 1122233344 5555433222 235999999999888775 22111 1
Q ss_pred ceEEEe-CCE-EEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEe-CCEEEEEcCCCCCC
Q 011542 181 HTATMV-EKR-LLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSG-GHYLLLFGGHGTGG 257 (483)
Q Consensus 181 ~~~~~~-~~~-lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~-~~~i~v~GG~~~~~ 257 (483)
...... +++ |+......+ . ..++.+|+++..-+.+...+. ........- +..|+..+....
T Consensus 290 ~~~~wSPDG~~I~f~s~~~g----~------~~Iy~~d~~~g~~~~lt~~~~----~~~~~~~SpDG~~Ia~~~~~~g-- 353 (429)
T PRK03629 290 TEPTWFPDSQNLAYTSDQAG----R------PQVYKVNINGGAPQRITWEGS----QNQDADVSSDGKFMVMVSSNGG-- 353 (429)
T ss_pred CceEECCCCCEEEEEeCCCC----C------ceEEEEECCCCCeEEeecCCC----CccCEEECCCCCEEEEEEccCC--
Confidence 122222 444 444332211 1 233445777766666642111 111112223 334444433221
Q ss_pred CCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEccCCC
Q 011542 258 WLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDG 312 (483)
Q Consensus 258 ~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~ 312 (483)
...++++|+.+..+..+..... .......-+++.+++.+.++
T Consensus 354 --------~~~I~~~dl~~g~~~~Lt~~~~-----~~~p~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 354 --------QQHIAKQDLATGGVQVLTDTFL-----DETPSIAPNGTMVIYSSSQG 395 (429)
T ss_pred --------CceEEEEECCCCCeEEeCCCCC-----CCCceECCCCCEEEEEEcCC
Confidence 1368999999998888764211 11112223566666666554
No 85
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.64 E-value=18 Score=35.30 Aligned_cols=241 Identities=13% Similarity=0.123 Sum_probs=103.8
Q ss_pred ceEEceeCCCCCCCCCCCcceeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEE
Q 011542 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIA 82 (483)
Q Consensus 3 ~W~~~~~~~~~g~~p~~R~~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~ 82 (483)
.|+++. .|....-..+..++++.-|++|-. ..++.=+---.+|........ .+......++
T Consensus 7 ~W~~v~-------l~t~~~l~dV~F~d~~~G~~VG~~------g~il~T~DGG~tW~~~~~~~~------~~~~~~l~~I 67 (302)
T PF14870_consen 7 SWQQVS-------LPTDKPLLDVAFVDPNHGWAVGAY------GTILKTTDGGKTWQPVSLDLD------NPFDYHLNSI 67 (302)
T ss_dssp -EEEEE--------S-SS-EEEEEESSSS-EEEEETT------TEEEEESSTTSS-EE-----S-----------EEEEE
T ss_pred CcEEee-------cCCCCceEEEEEecCCEEEEEecC------CEEEEECCCCccccccccCCC------ccceeeEEEE
Confidence 589886 455555566666677788988753 112221112358998763211 1111223344
Q ss_pred EEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCC
Q 011542 83 VAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTIS 162 (483)
Q Consensus 83 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t 162 (483)
...++..|+.|-.. -+..-.=.-.+|++++.. .+.+-..+....++++.++++|.. ..+++=.-.-
T Consensus 68 ~f~~~~g~ivG~~g------~ll~T~DgG~tW~~v~l~--~~lpgs~~~i~~l~~~~~~l~~~~------G~iy~T~DgG 133 (302)
T PF14870_consen 68 SFDGNEGWIVGEPG------LLLHTTDGGKTWERVPLS--SKLPGSPFGITALGDGSAELAGDR------GAIYRTTDGG 133 (302)
T ss_dssp EEETTEEEEEEETT------EEEEESSTTSS-EE------TT-SS-EEEEEEEETTEEEEEETT--------EEEESSTT
T ss_pred EecCCceEEEcCCc------eEEEecCCCCCcEEeecC--CCCCCCeeEEEEcCCCcEEEEcCC------CcEEEeCCCC
Confidence 45678899887421 122222245689998742 223334455666677788887743 3355544456
Q ss_pred CceEEeccCCCCCCCCcCceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEE
Q 011542 163 LEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTIT 241 (483)
Q Consensus 163 ~~W~~i~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~ 241 (483)
.+|+.+.. .... .-..+... ++++++++.... -+...|+....|+... .+..|.-.++.
T Consensus 134 ~tW~~~~~---~~~g-s~~~~~r~~dG~~vavs~~G~------------~~~s~~~G~~~w~~~~----r~~~~riq~~g 193 (302)
T PF14870_consen 134 KTWQAVVS---ETSG-SINDITRSSDGRYVAVSSRGN------------FYSSWDPGQTTWQPHN----RNSSRRIQSMG 193 (302)
T ss_dssp SSEEEEE----S-----EEEEEE-TTS-EEEEETTSS------------EEEEE-TT-SS-EEEE------SSS-EEEEE
T ss_pred CCeeEccc---CCcc-eeEeEEECCCCcEEEEECccc------------EEEEecCCCccceEEc----cCccceehhce
Confidence 68998752 1111 11112222 456555553321 1123477777899886 34445445555
Q ss_pred E-eCCEEEEEcCCCCCCCCcccceeeCcEEEEE--cCCCceEEccCCCCCCCCCcc-eEEEEE-CCEEEEEccCC
Q 011542 242 S-GGHYLLLFGGHGTGGWLSRYDIYYNDTIILD--RLSAQWKRLPIGNEPPPARAY-HSMTCL-GSLYLLFGGFD 311 (483)
Q Consensus 242 ~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd--~~~~~W~~v~~~~~~p~~R~~-~~~~~~-~~~i~v~GG~~ 311 (483)
. -++.++++. .. + .+..=+ -...+|.+.... .....++ ..++.- ++.+++.||..
T Consensus 194 f~~~~~lw~~~-~G--g----------~~~~s~~~~~~~~w~~~~~~--~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 194 FSPDGNLWMLA-RG--G----------QIQFSDDPDDGETWSEPIIP--IKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp E-TTS-EEEEE-TT--T----------EEEEEE-TTEEEEE---B-T--TSS--S-EEEEEESSSS-EEEEESTT
T ss_pred ecCCCCEEEEe-CC--c----------EEEEccCCCCccccccccCC--cccCceeeEEEEecCCCCEEEEeCCc
Confidence 4 556787765 11 1 122222 245677773221 1122332 233333 58999999864
No 86
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.59 E-value=18 Score=35.28 Aligned_cols=200 Identities=15% Similarity=0.192 Sum_probs=87.9
Q ss_pred ceEEceeCCCCCCCCCCCcceeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEE
Q 011542 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIA 82 (483)
Q Consensus 3 ~W~~~~~~~~~g~~p~~R~~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~ 82 (483)
.|+++.-+ .+.|-..+....++++.++++|.. ..+++=.-.-.+|..+... ..-....+
T Consensus 92 tW~~v~l~-----~~lpgs~~~i~~l~~~~~~l~~~~------G~iy~T~DgG~tW~~~~~~----------~~gs~~~~ 150 (302)
T PF14870_consen 92 TWERVPLS-----SKLPGSPFGITALGDGSAELAGDR------GAIYRTTDGGKTWQAVVSE----------TSGSINDI 150 (302)
T ss_dssp S-EE---------TT-SS-EEEEEEEETTEEEEEETT--------EEEESSTTSSEEEEE-S--------------EEEE
T ss_pred CcEEeecC-----CCCCCCeeEEEEcCCCcEEEEcCC------CcEEEeCCCCCCeeEcccC----------CcceeEeE
Confidence 68888521 122333355566677788887643 3355444455699987632 11112222
Q ss_pred EE-ECCEEEEEccccCCCCCccEE-EEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEEC
Q 011542 83 VA-IDCHMFIFGGRFGSRRLGDFW-VLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDT 160 (483)
Q Consensus 83 ~~-~~~~iyv~GG~~~~~~~~~~~-~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 160 (483)
.. -++++++++... .++ ..|+-...|.... .+..|.--+|....++.++++. +.+.-.+++ ..-
T Consensus 151 ~r~~dG~~vavs~~G------~~~~s~~~G~~~w~~~~----r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~---~~~ 216 (302)
T PF14870_consen 151 TRSSDGRYVAVSSRG------NFYSSWDPGQTTWQPHN----RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD---DPD 216 (302)
T ss_dssp EE-TTS-EEEEETTS------SEEEEE-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE----TT
T ss_pred EECCCCcEEEEECcc------cEEEEecCCCccceEEc----cCccceehhceecCCCCEEEEe-CCcEEEEcc---CCC
Confidence 22 355655555322 233 4577777898887 5566777777777777888876 333211111 112
Q ss_pred CCCceEEeccCCCCCCCCcCce-EEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeee
Q 011542 161 ISLEWMQLPVTGSVPPPRCGHT-ATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGH 238 (483)
Q Consensus 161 ~t~~W~~i~~~~~~p~~r~~~~-~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~ 238 (483)
...+|.+.. .+.....++.. ++.. ++.+++.||... ++.. .-...+|++.......|...+.
T Consensus 217 ~~~~w~~~~--~~~~~~~~~~ld~a~~~~~~~wa~gg~G~-------l~~S------~DgGktW~~~~~~~~~~~n~~~- 280 (302)
T PF14870_consen 217 DGETWSEPI--IPIKTNGYGILDLAYRPPNEIWAVGGSGT-------LLVS------TDGGKTWQKDRVGENVPSNLYR- 280 (302)
T ss_dssp EEEEE---B---TTSS--S-EEEEEESSSS-EEEEESTT--------EEEE------SSTTSS-EE-GGGTTSSS---E-
T ss_pred Ccccccccc--CCcccCceeeEEEEecCCCCEEEEeCCcc-------EEEe------CCCCccceECccccCCCCceEE-
Confidence 345677632 02222223322 2333 579999998642 1111 3357799998743233433332
Q ss_pred EEEEeCCEEEEEcCC
Q 011542 239 TITSGGHYLLLFGGH 253 (483)
Q Consensus 239 ~~~~~~~~i~v~GG~ 253 (483)
-.....++-+++|-.
T Consensus 281 i~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 281 IVFVNPDKGFVLGQD 295 (302)
T ss_dssp EEEEETTEEEEE-ST
T ss_pred EEEcCCCceEEECCC
Confidence 222356789998853
No 87
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=90.47 E-value=14 Score=33.91 Aligned_cols=108 Identities=8% Similarity=-0.002 Sum_probs=50.3
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWV 106 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~ 106 (483)
..++..++.|+.+ ..+.+||..+.+-...-. .....-.++... ++.+++.|+.+ ..+.+
T Consensus 60 ~~~~~~l~~~~~~-----~~i~i~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~ 119 (289)
T cd00200 60 SADGTYLASGSSD-----KTIRLWDLETGECVRTLT----------GHTSYVSSVAFSPDGRILSSSSRD-----KTIKV 119 (289)
T ss_pred CCCCCEEEEEcCC-----CeEEEEEcCcccceEEEe----------ccCCcEEEEEEcCCCCEEEEecCC-----CeEEE
Confidence 3444466666642 457888887753222110 011111222222 34566665523 35888
Q ss_pred EECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 107 LDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 107 yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
||+.+.+-...-. .....-.++....++.+++.|..+ ..+.+||..+.+
T Consensus 120 ~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~ 168 (289)
T cd00200 120 WDVETGKCLTTLR----GHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGK 168 (289)
T ss_pred EECCCcEEEEEec----cCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEccccc
Confidence 9988554332211 111112223333334555555422 357888887543
No 88
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=90.40 E-value=14 Score=33.91 Aligned_cols=195 Identities=16% Similarity=0.247 Sum_probs=103.1
Q ss_pred ceEEEEcCCC--cEEeeeecCCCCCCCCCCCCcceeE--EEEECCEEEEEccccCCCCCccEEEEECCCCe--EEEeecC
Q 011542 47 DVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHI--AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQ--WSELTSF 120 (483)
Q Consensus 47 ~~~~yd~~~~--~W~~~~~~~~~~~~~~~p~~R~~h~--~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~l~~~ 120 (483)
.+.++|+.++ .|..-. ..+..... .+..++.+|+..+ ...++++|+.+++ |+.-.
T Consensus 4 ~l~~~d~~tG~~~W~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~-- 64 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL-----------GPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL-- 64 (238)
T ss_dssp EEEEEETTTTEEEEEEEC-----------SSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC--
T ss_pred EEEEEECCCCCEEEEEEC-----------CCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec--
Confidence 4677888766 476631 01122222 3447889998832 2469999998875 55432
Q ss_pred CCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc--eE-EeccCCCCCCCCcCceEEEeCCEEEEEccCC
Q 011542 121 GDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WM-QLPVTGSVPPPRCGHTATMVEKRLLIYGGRG 197 (483)
Q Consensus 121 ~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~-~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~ 197 (483)
+..... ..... ++.+|+..+ -+.++.+|..+++ |+ ........+ .+........++.+|+....
T Consensus 65 ---~~~~~~-~~~~~-~~~v~v~~~------~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 131 (238)
T PF13360_consen 65 ---PGPISG-APVVD-GGRVYVGTS------DGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTSS- 131 (238)
T ss_dssp ---SSCGGS-GEEEE-TTEEEEEET------TSEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEETC-
T ss_pred ---cccccc-eeeec-ccccccccc------eeeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEecc-
Confidence 122111 13334 458888762 2279999977764 88 443111111 22334444457777776531
Q ss_pred CCCCcccceecccccccccCCCCC--eEEeccCCCCCCC--------CeeeEEEEeCCEEEEEcCCCCCCCCcccceeeC
Q 011542 198 GGGPIMGDLWALKGLIEEENETPG--WTQLKLPGQAPSS--------RCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYN 267 (483)
Q Consensus 198 ~~~~~~~d~~~l~~~~~yd~~~~~--W~~~~~~g~~p~~--------r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~ 267 (483)
..+..+|+++.+ |+... ..|.. ......++.++.+|+..+..
T Consensus 132 ------------g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------------- 183 (238)
T PF13360_consen 132 ------------GKLVALDPKTGKLLWKYPV---GEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------------- 183 (238)
T ss_dssp ------------SEEEEEETTTTEEEEEEES---STT-SS--EEEETTEEEEEECCTTEEEEECCTS-------------
T ss_pred ------------CcEEEEecCCCcEEEEeec---CCCCCCcceeeecccccceEEECCEEEEEcCCC-------------
Confidence 334556877553 55543 12211 12234445667888876532
Q ss_pred cEEEEEcCCCc--eEEccCCCCCCCCCcceEEEEECCEEEEEc
Q 011542 268 DTIILDRLSAQ--WKRLPIGNEPPPARAYHSMTCLGSLYLLFG 308 (483)
Q Consensus 268 ~v~~yd~~~~~--W~~v~~~~~~p~~R~~~~~~~~~~~i~v~G 308 (483)
.+..+|..+.. |+.. .. . ........++.+|+..
T Consensus 184 ~~~~~d~~tg~~~w~~~-~~-~-----~~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 184 RVVAVDLATGEKLWSKP-IS-G-----IYSLPSVDGGTLYVTS 219 (238)
T ss_dssp SEEEEETTTTEEEEEEC-SS-------ECECEECCCTEEEEEE
T ss_pred eEEEEECCCCCEEEEec-CC-C-----ccCCceeeCCEEEEEe
Confidence 25666988876 7443 21 1 1122344567777765
No 89
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=90.02 E-value=15 Score=33.65 Aligned_cols=111 Identities=12% Similarity=0.091 Sum_probs=53.6
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~y 107 (483)
..++.++++|+.+ ..+.+||..+..-..... ............-++..++.|+.+ ..+.+|
T Consensus 18 ~~~~~~l~~~~~~-----g~i~i~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~ 78 (289)
T cd00200 18 SPDGKLLATGSGD-----GTIKVWDLETGELLRTLK---------GHTGPVRDVAASADGTYLASGSSD-----KTIRLW 78 (289)
T ss_pred cCCCCEEEEeecC-----cEEEEEEeeCCCcEEEEe---------cCCcceeEEEECCCCCEEEEEcCC-----CeEEEE
Confidence 3445677777643 357788887665211110 011111122222244466666643 357888
Q ss_pred ECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceE
Q 011542 108 DTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWM 166 (483)
Q Consensus 108 d~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 166 (483)
|..+++-...-. . ....-.++....++.+++.|+.+ ..+..||+.+.+-.
T Consensus 79 ~~~~~~~~~~~~---~-~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~ 128 (289)
T cd00200 79 DLETGECVRTLT---G-HTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCL 128 (289)
T ss_pred EcCcccceEEEe---c-cCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEE
Confidence 887653222111 0 11112233333444666666532 45888998755433
No 90
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=89.87 E-value=18 Score=34.21 Aligned_cols=157 Identities=15% Similarity=0.004 Sum_probs=83.8
Q ss_pred CCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEE-EeecCCCCCCCCcc------------cEEEEECCcE
Q 011542 73 GPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWS-ELTSFGDLPSPRDF------------AAASAIGNRK 139 (483)
Q Consensus 73 ~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~-~l~~~~~~p~~r~~------------~~~~~~~~~~ 139 (483)
+|-+-.+...++.++.+|.--. ..+.+.+||+.++.-. +.. +|.+... .-.++-++ =
T Consensus 65 Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~t~~v~~~~~----L~~A~~~n~~~y~~~~~t~iD~AvDE~-G 134 (250)
T PF02191_consen 65 LPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLTTRSVVARRE----LPGAGYNNRFPYYWSGYTDIDFAVDEN-G 134 (250)
T ss_pred EeceeccCCeEEECCcEEEEec-----CCceEEEEECcCCcEEEEEE----CCccccccccceecCCCceEEEEEcCC-C
Confidence 3444456666778888776532 3467999999888655 332 2332222 23344444 3
Q ss_pred EEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCC
Q 011542 140 IVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENET 219 (483)
Q Consensus 140 iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~ 219 (483)
|+|+=......-.--+-..|+.+..-++.=.+ ..+++..+. +.++-|.||++-....... .-.+.||+.+
T Consensus 135 LWvIYat~~~~g~ivvskld~~tL~v~~tw~T-~~~k~~~~n-aFmvCGvLY~~~s~~~~~~--------~I~yafDt~t 204 (250)
T PF02191_consen 135 LWVIYATEDNNGNIVVSKLDPETLSVEQTWNT-SYPKRSAGN-AFMVCGVLYATDSYDTRDT--------EIFYAFDTYT 204 (250)
T ss_pred EEEEEecCCCCCcEEEEeeCcccCceEEEEEe-ccCchhhcc-eeeEeeEEEEEEECCCCCc--------EEEEEEECCC
Confidence 55554433322222345567665432222111 344444443 4556789999877654321 3356788887
Q ss_pred CCeEEeccCCCCCCCCeeeEEEE---eCCEEEEEc
Q 011542 220 PGWTQLKLPGQAPSSRCGHTITS---GGHYLLLFG 251 (483)
Q Consensus 220 ~~W~~~~~~g~~p~~r~~~~~~~---~~~~i~v~G 251 (483)
++=..+.+ +.+.+-..+++.. .+.+||++-
T Consensus 205 ~~~~~~~i--~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 205 GKEEDVSI--PFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred Cceeceee--eeccccCceEeeeECCCCCeEEEEE
Confidence 76655543 2333334445554 355788864
No 91
>PRK04043 tolB translocation protein TolB; Provisional
Probab=89.66 E-value=26 Score=35.88 Aligned_cols=152 Identities=13% Similarity=0.188 Sum_probs=83.1
Q ss_pred ccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcC
Q 011542 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (483)
Q Consensus 102 ~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~ 180 (483)
.++|++|+.+++=.++.. .+. ... +.....|+ +|++.-...+ ..++|.+|..++.++++. ..+. ..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~---~~g-~~~-~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT---~~~~--~d 279 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIAS---SQG-MLV-VSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQIT---NYPG--ID 279 (419)
T ss_pred CEEEEEECCCCcEEEEec---CCC-cEE-eeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcc---cCCC--cc
Confidence 379999998887777763 111 111 11122233 5555443322 468999999999999886 2222 11
Q ss_pred ceEEEe--CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCC
Q 011542 181 HTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGW 258 (483)
Q Consensus 181 ~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 258 (483)
...... +++|++.....+. ..++.+|+++...+++...+. ........+..|..........
T Consensus 280 ~~p~~SPDG~~I~F~Sdr~g~----------~~Iy~~dl~~g~~~rlt~~g~-----~~~~~SPDG~~Ia~~~~~~~~~- 343 (419)
T PRK04043 280 VNGNFVEDDKRIVFVSDRLGY----------PNIFMKKLNSGSVEQVVFHGK-----NNSSVSTYKNYIVYSSRETNNE- 343 (419)
T ss_pred CccEECCCCCEEEEEECCCCC----------ceEEEEECCCCCeEeCccCCC-----cCceECCCCCEEEEEEcCCCcc-
Confidence 122222 4467776544221 345556888888877763222 1122222444554444322110
Q ss_pred CcccceeeCcEEEEEcCCCceEEccCC
Q 011542 259 LSRYDIYYNDTIILDRLSAQWKRLPIG 285 (483)
Q Consensus 259 ~~~~~~~~~~v~~yd~~~~~W~~v~~~ 285 (483)
......+++++|+.+..++.+...
T Consensus 344 ---~~~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 344 ---FGKNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred ---cCCCCcEEEEEECCCCCeEECCCC
Confidence 000135799999999999888764
No 92
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=89.62 E-value=31 Score=36.59 Aligned_cols=126 Identities=16% Similarity=0.051 Sum_probs=63.6
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCC--cEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFW 105 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~ 105 (483)
+.+++||+.... ..++++|..++ .|+.-....... .............++.+++||+... + ..++
T Consensus 67 v~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~-~~~~~~~~~~rg~av~~~~v~v~t~-d-----g~l~ 133 (527)
T TIGR03075 67 VVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDV-IPVMCCDVVNRGVALYDGKVFFGTL-D-----ARLV 133 (527)
T ss_pred EECCEEEEECCC------CcEEEEECCCCceeeEecCCCCccc-ccccccccccccceEECCEEEEEcC-C-----CEEE
Confidence 335788885542 35889998876 587643211000 0000011112234566788886422 1 3589
Q ss_pred EEECCCCe--EEEeecCCCCCCCC-cccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc--eEEec
Q 011542 106 VLDTDIWQ--WSELTSFGDLPSPR-DFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLP 169 (483)
Q Consensus 106 ~yd~~t~~--W~~l~~~~~~p~~r-~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~i~ 169 (483)
++|.+|++ |+.-.. +..... ...+-++. ++.||+-...........+..||..|++ |+.-.
T Consensus 134 ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 134 ALDAKTGKVVWSKKNG--DYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred EEECCCCCEEeecccc--cccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 99998875 754321 121111 11222334 4477664322112234568899998875 76543
No 93
>PRK04922 tolB translocation protein TolB; Provisional
Probab=89.60 E-value=27 Score=35.90 Aligned_cols=147 Identities=16% Similarity=0.205 Sum_probs=76.5
Q ss_pred ccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcC
Q 011542 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (483)
Q Consensus 102 ~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~ 180 (483)
..++++|..+++-..+.. .+... .+...-.++ +|++....++ ..+++.+|+.+++-+++.. ... ..
T Consensus 228 ~~l~~~dl~~g~~~~l~~---~~g~~--~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~---~~~--~~ 294 (433)
T PRK04922 228 SAIYVQDLATGQRELVAS---FRGIN--GAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTN---HFG--ID 294 (433)
T ss_pred cEEEEEECCCCCEEEecc---CCCCc--cCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECcc---CCC--Cc
Confidence 469999999888777653 22111 122222333 5555433322 2579999999988777652 111 11
Q ss_pred ceEEEe-CC-EEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCC
Q 011542 181 HTATMV-EK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGW 258 (483)
Q Consensus 181 ~~~~~~-~~-~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 258 (483)
...... ++ +|++.....+. ..++.+|..+.+.+.+...+... ...+....+..|++..+...
T Consensus 295 ~~~~~spDG~~l~f~sd~~g~----------~~iy~~dl~~g~~~~lt~~g~~~---~~~~~SpDG~~Ia~~~~~~~--- 358 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDRGGR----------PQIYRVAASGGSAERLTFQGNYN---ARASVSPDGKKIAMVHGSGG--- 358 (433)
T ss_pred cceEECCCCCEEEEEECCCCC----------ceEEEEECCCCCeEEeecCCCCc---cCEEECCCCCEEEEEECCCC---
Confidence 122233 34 44444332211 23445577777777775322111 11122123455655544211
Q ss_pred CcccceeeCcEEEEEcCCCceEEccC
Q 011542 259 LSRYDIYYNDTIILDRLSAQWKRLPI 284 (483)
Q Consensus 259 ~~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (483)
...++++|+.+.....+..
T Consensus 359 -------~~~I~v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 359 -------QYRIAVMDLSTGSVRTLTP 377 (433)
T ss_pred -------ceeEEEEECCCCCeEECCC
Confidence 1369999998888877654
No 94
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=89.46 E-value=18 Score=33.74 Aligned_cols=200 Identities=11% Similarity=0.039 Sum_probs=104.8
Q ss_pred CcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCCCCccEEEE
Q 011542 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 30 ~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~~~~~~~y 107 (483)
++.+|+..-. ...++++|+.++.-..+.. +. -.++++. ++++|+.... .+.++
T Consensus 11 ~g~l~~~D~~-----~~~i~~~~~~~~~~~~~~~----------~~---~~G~~~~~~~g~l~v~~~~-------~~~~~ 65 (246)
T PF08450_consen 11 DGRLYWVDIP-----GGRIYRVDPDTGEVEVIDL----------PG---PNGMAFDRPDGRLYVADSG-------GIAVV 65 (246)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTTEEEEEES----------SS---EEEEEEECTTSEEEEEETT-------CEEEE
T ss_pred CCEEEEEEcC-----CCEEEEEECCCCeEEEEec----------CC---CceEEEEccCCEEEEEEcC-------ceEEE
Confidence 4677776432 3579999999987766541 22 2334443 6788877542 25677
Q ss_pred ECCCCeEEEeecCCCCC-CCCcccEEEEECCcEEEEEecCCCC-cCC--ccEEEEECCCCceEEeccCCCCCCCCcCceE
Q 011542 108 DTDIWQWSELTSFGDLP-SPRDFAAASAIGNRKIVMYGGWDGK-KWL--SDVYVLDTISLEWMQLPVTGSVPPPRCGHTA 183 (483)
Q Consensus 108 d~~t~~W~~l~~~~~~p-~~r~~~~~~~~~~~~iyv~GG~~~~-~~~--~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~ 183 (483)
|+.+++++.+....... .......+++-.++.||+---.... ... ..++++++. .+.+.+.. .+. ....+
T Consensus 66 d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~---~pNGi 139 (246)
T PF08450_consen 66 DPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLG---FPNGI 139 (246)
T ss_dssp ETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EES---SEEEE
T ss_pred ecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Ccc---cccce
Confidence 99999998887521111 1222223445566788775422211 112 579999998 66665541 111 11344
Q ss_pred EEe--CCEEEEEccCCCCCCcccceecccccccccCCCCC--eEEeccCCCCCCC-CeeeEEEE-eCCEEEEEcCCCCCC
Q 011542 184 TMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPG--WTQLKLPGQAPSS-RCGHTITS-GGHYLLLFGGHGTGG 257 (483)
Q Consensus 184 ~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~--W~~~~~~g~~p~~-r~~~~~~~-~~~~i~v~GG~~~~~ 257 (483)
++. ++.||+.--. -..++.|+++... +.....-...+.. ..--.+++ ..+.||+..- .
T Consensus 140 ~~s~dg~~lyv~ds~------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~--- 203 (246)
T PF08450_consen 140 AFSPDGKTLYVADSF------------NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-G--- 203 (246)
T ss_dssp EEETTSSEEEEEETT------------TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-T---
T ss_pred EECCcchheeecccc------------cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-C---
Confidence 444 3467774321 1335556665333 3322210012222 12234444 4678888632 1
Q ss_pred CCcccceeeCcEEEEEcCCCceEEccC
Q 011542 258 WLSRYDIYYNDTIILDRLSAQWKRLPI 284 (483)
Q Consensus 258 ~~~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (483)
.+.|++||++...-..+..
T Consensus 204 --------~~~I~~~~p~G~~~~~i~~ 222 (246)
T PF08450_consen 204 --------GGRIVVFDPDGKLLREIEL 222 (246)
T ss_dssp --------TTEEEEEETTSCEEEEEE-
T ss_pred --------CCEEEEECCCccEEEEEcC
Confidence 2569999999665666654
No 95
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=89.46 E-value=11 Score=36.99 Aligned_cols=139 Identities=11% Similarity=0.035 Sum_probs=78.6
Q ss_pred cEEEEEecC-CCC---cCC-ccEEEEECCCC-----ceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCccccee
Q 011542 138 RKIVMYGGW-DGK---KWL-SDVYVLDTISL-----EWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLW 207 (483)
Q Consensus 138 ~~iyv~GG~-~~~---~~~-~~v~~yd~~t~-----~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~ 207 (483)
..++++|-. ... ... ..+..|++... +.+.+. ....+-.-.+++.++++|.+.-|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~~~~lv~~~g------------ 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH---STEVKGPVTAICSFNGRLVVAVG------------ 106 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEETTEEEEEET------------
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhhCCEEEEeec------------
Confidence 466777742 211 122 66889998885 666664 33333334566667888776665
Q ss_pred cccccccccCCCCC-eEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCC
Q 011542 208 ALKGLIEEENETPG-WTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGN 286 (483)
Q Consensus 208 ~l~~~~~yd~~~~~-W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~ 286 (483)
+.+..|++.... +.... ....+-...++.+.++.|++ |-... .-.++.|+....+-..++..
T Consensus 107 --~~l~v~~l~~~~~l~~~~---~~~~~~~i~sl~~~~~~I~v-gD~~~----------sv~~~~~~~~~~~l~~va~d- 169 (321)
T PF03178_consen 107 --NKLYVYDLDNSKTLLKKA---FYDSPFYITSLSVFKNYILV-GDAMK----------SVSLLRYDEENNKLILVARD- 169 (321)
T ss_dssp --TEEEEEEEETTSSEEEEE---EE-BSSSEEEEEEETTEEEE-EESSS----------SEEEEEEETTTE-EEEEEEE-
T ss_pred --CEEEEEEccCcccchhhh---eecceEEEEEEeccccEEEE-EEccc----------CEEEEEEEccCCEEEEEEec-
Confidence 445567777777 77766 33333355566677886665 42211 12345667766667777663
Q ss_pred CCCCCCcceEEEEE-CCEEEEEccC
Q 011542 287 EPPPARAYHSMTCL-GSLYLLFGGF 310 (483)
Q Consensus 287 ~~p~~R~~~~~~~~-~~~i~v~GG~ 310 (483)
+.+++..++..+ ++..++++-.
T Consensus 170 --~~~~~v~~~~~l~d~~~~i~~D~ 192 (321)
T PF03178_consen 170 --YQPRWVTAAEFLVDEDTIIVGDK 192 (321)
T ss_dssp --SS-BEEEEEEEE-SSSEEEEEET
T ss_pred --CCCccEEEEEEecCCcEEEEEcC
Confidence 337777777777 5555555433
No 96
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.19 E-value=20 Score=36.55 Aligned_cols=192 Identities=11% Similarity=0.076 Sum_probs=98.3
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcC------CccEEEEE
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKW------LSDVYVLD 159 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~------~~~v~~yd 159 (483)
+++.++++=-.++.-...+.++|+.+++...-. ++.+.... ++-..+++.+++...+.... ...+++..
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~----i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG----IENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE----EEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc----ccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 567667764444455557999999999553322 22222221 44445555666665554333 67789999
Q ss_pred CCCCceE--EeccCCCCCCCCc-CceEEEe-CC-EEEEEccCCCCCCcccceecccccccccCCCC-----CeEEeccCC
Q 011542 160 TISLEWM--QLPVTGSVPPPRC-GHTATMV-EK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETP-----GWTQLKLPG 229 (483)
Q Consensus 160 ~~t~~W~--~i~~~~~~p~~r~-~~~~~~~-~~-~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~-----~W~~~~~~g 229 (483)
+.+..-. .+- ..+.... ...+..- ++ .|+|.-..... .+++|. .|.... .|..+..
T Consensus 209 ~gt~~~~d~lvf---e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~---~s~v~~------~d~~~~~~~~~~~~~l~~-- 274 (414)
T PF02897_consen 209 LGTPQSEDELVF---EEPDEPFWFVSVSRSKDGRYLFISSSSGTS---ESEVYL------LDLDDGGSPDAKPKLLSP-- 274 (414)
T ss_dssp TTS-GGG-EEEE---C-TTCTTSEEEEEE-TTSSEEEEEEESSSS---EEEEEE------EECCCTTTSS-SEEEEEE--
T ss_pred CCCChHhCeeEE---eecCCCcEEEEEEecCcccEEEEEEEcccc---CCeEEE------EeccccCCCcCCcEEEeC--
Confidence 8887654 222 1222222 2222222 33 44443332221 234444 466654 7887762
Q ss_pred CCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCc---eE-EccCCCCCCCCCcceEEEEECCEEE
Q 011542 230 QAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ---WK-RLPIGNEPPPARAYHSMTCLGSLYL 305 (483)
Q Consensus 230 ~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~---W~-~v~~~~~~p~~R~~~~~~~~~~~i~ 305 (483)
+.......+...++.+|+....+. ....+..+++.... |. .+.... .....-.+...+++|+
T Consensus 275 --~~~~~~~~v~~~~~~~yi~Tn~~a---------~~~~l~~~~l~~~~~~~~~~~l~~~~---~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 275 --REDGVEYYVDHHGDRLYILTNDDA---------PNGRLVAVDLADPSPAEWWTVLIPED---EDVSLEDVSLFKDYLV 340 (414)
T ss_dssp --SSSS-EEEEEEETTEEEEEE-TT----------TT-EEEEEETTSTSGGGEEEEEE--S---SSEEEEEEEEETTEEE
T ss_pred --CCCceEEEEEccCCEEEEeeCCCC---------CCcEEEEecccccccccceeEEcCCC---CceeEEEEEEECCEEE
Confidence 222233344456889999876332 34678899987664 66 443321 1223344455678887
Q ss_pred EEccC
Q 011542 306 LFGGF 310 (483)
Q Consensus 306 v~GG~ 310 (483)
+.-=.
T Consensus 341 l~~~~ 345 (414)
T PF02897_consen 341 LSYRE 345 (414)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76543
No 97
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.18 E-value=28 Score=35.46 Aligned_cols=114 Identities=22% Similarity=0.174 Sum_probs=58.5
Q ss_pred eeEEEECCcEEEEEcccCCCccccceEEEEcCCCc-EEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCC
Q 011542 23 HSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKL-WFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRL 101 (483)
Q Consensus 23 h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~ 101 (483)
.++..-.||++++.|+.. ..+-+||..+.. -..+. +...|..+. ..+..++.++++|+-+.
T Consensus 72 ~s~~fR~DG~LlaaGD~s-----G~V~vfD~k~r~iLR~~~-------ah~apv~~~--~f~~~d~t~l~s~sDd~---- 133 (487)
T KOG0310|consen 72 YSVDFRSDGRLLAAGDES-----GHVKVFDMKSRVILRQLY-------AHQAPVHVT--KFSPQDNTMLVSGSDDK---- 133 (487)
T ss_pred eEEEeecCCeEEEccCCc-----CcEEEeccccHHHHHHHh-------hccCceeEE--EecccCCeEEEecCCCc----
Confidence 344444678899988854 358889954421 11111 011122111 12335789999987443
Q ss_pred ccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCC
Q 011542 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 102 ~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
.+-.+|..+.. .+....+.--.-|. ..+.-.++.|++-||+++. +-.||+.+.
T Consensus 134 -v~k~~d~s~a~-v~~~l~~htDYVR~--g~~~~~~~hivvtGsYDg~-----vrl~DtR~~ 186 (487)
T KOG0310|consen 134 -VVKYWDLSTAY-VQAELSGHTDYVRC--GDISPANDHIVVTGSYDGK-----VRLWDTRSL 186 (487)
T ss_pred -eEEEEEcCCcE-EEEEecCCcceeEe--eccccCCCeEEEecCCCce-----EEEEEeccC
Confidence 23344555544 34332111111121 1222235589999998775 566777766
No 98
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=86.45 E-value=30 Score=32.69 Aligned_cols=102 Identities=14% Similarity=-0.025 Sum_probs=53.3
Q ss_pred EEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE-E-CCEEEEEccccCCCCCccEEEEEC
Q 011542 32 KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA-I-DCHMFIFGGRFGSRRLGDFWVLDT 109 (483)
Q Consensus 32 ~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~-~~~iyv~GG~~~~~~~~~~~~yd~ 109 (483)
.+|+.++.+ ..+.+||+.+++-...-.. ...++ .++. - +..+|+.++.. +.+.+||.
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~--------~~~~~---~l~~~~dg~~l~~~~~~~-----~~v~~~d~ 60 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPV--------GQRPR---GITLSKDGKLLYVCASDS-----DTIQVIDL 60 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEEC--------CCCCC---ceEECCCCCEEEEEECCC-----CeEEEEEC
Confidence 466666643 3688899887764332211 11122 2222 2 34577776532 35888999
Q ss_pred CCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCc
Q 011542 110 DIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 110 ~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
.+++....-.. .+. ...++...++ .+|+.++. .+.+..||+.+.+
T Consensus 61 ~~~~~~~~~~~--~~~---~~~~~~~~~g~~l~~~~~~-----~~~l~~~d~~~~~ 106 (300)
T TIGR03866 61 ATGEVIGTLPS--GPD---PELFALHPNGKILYIANED-----DNLVTVIDIETRK 106 (300)
T ss_pred CCCcEEEeccC--CCC---ccEEEECCCCCEEEEEcCC-----CCeEEEEECCCCe
Confidence 88766442211 111 1223333333 56665542 2358889998764
No 99
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=86.38 E-value=35 Score=33.43 Aligned_cols=114 Identities=11% Similarity=-0.057 Sum_probs=53.4
Q ss_pred eEEEECCcE-EEEEcccCCCccccceEEEEcC-CCcEEeeeecCCCCCCCCCCCCcceeEEEEECC-EEEEEccccCCCC
Q 011542 24 SAVNIGKSK-VVVFGGLVDKRFLSDVVVYDID-NKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC-HMFIFGGRFGSRR 100 (483)
Q Consensus 24 ~~~~~~~~~-l~v~GG~~~~~~~~~~~~yd~~-~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~-~iyv~GG~~~~~~ 100 (483)
.+++..+++ +|+.+. . .+.+..|++. ++++..+..... + ....|.+..-++ .+|+.. +.
T Consensus 39 ~l~~spd~~~lyv~~~-~----~~~i~~~~~~~~g~l~~~~~~~~-------~-~~p~~i~~~~~g~~l~v~~-~~---- 100 (330)
T PRK11028 39 PMVISPDKRHLYVGVR-P----EFRVLSYRIADDGALTFAAESPL-------P-GSPTHISTDHQGRFLFSAS-YN---- 100 (330)
T ss_pred cEEECCCCCEEEEEEC-C----CCcEEEEEECCCCceEEeeeecC-------C-CCceEEEECCCCCEEEEEE-cC----
Confidence 344443444 555433 2 2457777776 456765543211 1 112333333344 566653 22
Q ss_pred CccEEEEECCCCe--EEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCC
Q 011542 101 LGDFWVLDTDIWQ--WSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 101 ~~~~~~yd~~t~~--W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
-+.+.+||+.++. ...+.. .+.....|+++...++ .+|+.. . ..+.+.+||+.+.
T Consensus 101 ~~~v~v~~~~~~g~~~~~~~~---~~~~~~~~~~~~~p~g~~l~v~~-~----~~~~v~v~d~~~~ 158 (330)
T PRK11028 101 ANCVSVSPLDKDGIPVAPIQI---IEGLEGCHSANIDPDNRTLWVPC-L----KEDRIRLFTLSDD 158 (330)
T ss_pred CCeEEEEEECCCCCCCCceee---ccCCCcccEeEeCCCCCEEEEee-C----CCCEEEEEEECCC
Confidence 2357778775321 112221 2222234555444343 566643 2 2456889998763
No 100
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=86.18 E-value=23 Score=35.22 Aligned_cols=171 Identities=18% Similarity=0.170 Sum_probs=82.7
Q ss_pred CcceeEEEECCcE-EEEEcccCCCccccceEEEEcCCCc--EEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccc
Q 011542 20 RSGHSAVNIGKSK-VVVFGGLVDKRFLSDVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGR 95 (483)
Q Consensus 20 R~~h~~~~~~~~~-l~v~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~ 95 (483)
-.-|++....+++ +|+.. .. .+.+++|+..... ........ .+.+..|| |.+..- +..+|+..-.
T Consensus 144 ~h~H~v~~~pdg~~v~v~d-lG----~D~v~~~~~~~~~~~l~~~~~~~----~~~G~GPR--h~~f~pdg~~~Yv~~e~ 212 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPD-LG----ADRVYVYDIDDDTGKLTPVDSIK----VPPGSGPR--HLAFSPDGKYAYVVNEL 212 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEE-TT----TTEEEEEEE-TTS-TEEEEEEEE----CSTTSSEE--EEEE-TTSSEEEEEETT
T ss_pred ccceeEEECCCCCEEEEEe-cC----CCEEEEEEEeCCCceEEEeeccc----cccCCCCc--EEEEcCCcCEEEEecCC
Confidence 3447777776655 55532 21 2568888887765 54433221 11223344 444333 4578998643
Q ss_pred cCCCCCccEEEEEC--CCCeEEEeecCCCCCCC---C-cccEEEEECCc-EEEEEecCCCCcCCccEEEEEC--CCCceE
Q 011542 96 FGSRRLGDFWVLDT--DIWQWSELTSFGDLPSP---R-DFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDT--ISLEWM 166 (483)
Q Consensus 96 ~~~~~~~~~~~yd~--~t~~W~~l~~~~~~p~~---r-~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~--~t~~W~ 166 (483)
+ +.+.+|+. .+..++.+.....+|.. . ..+.++.-.|+ .+||.-. ..+.+.+|++ .+++-+
T Consensus 213 s-----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr-----~~~sI~vf~~d~~~g~l~ 282 (345)
T PF10282_consen 213 S-----NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR-----GSNSISVFDLDPATGTLT 282 (345)
T ss_dssp T-----TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC-----TTTEEEEEEECTTTTTEE
T ss_pred C-----CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec-----cCCEEEEEEEecCCCceE
Confidence 3 34555554 47777766543233332 2 22233333343 6777542 2566777776 456666
Q ss_pred EeccCCCCCC-CCcCceEEEe--CCEEEEEccCCCCCCcccceecccccccc--cCCCCCeEEec
Q 011542 167 QLPVTGSVPP-PRCGHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEE--ENETPGWTQLK 226 (483)
Q Consensus 167 ~i~~~~~~p~-~r~~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~y--d~~~~~W~~~~ 226 (483)
.+. ..+. ...-..+++. ++.|||... .+ +.+.+| |.++..++.+.
T Consensus 283 ~~~---~~~~~G~~Pr~~~~s~~g~~l~Va~~-~s-----------~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 283 LVQ---TVPTGGKFPRHFAFSPDGRYLYVANQ-DS-----------NTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEE---EEEESSSSEEEEEE-TTSSEEEEEET-TT-----------TEEEEEEEETTTTEEEEEE
T ss_pred EEE---EEeCCCCCccEEEEeCCCCEEEEEec-CC-----------CeEEEEEEeCCCCcEEEec
Confidence 554 2222 1111123332 456666543 22 223333 66777787665
No 101
>PRK03629 tolB translocation protein TolB; Provisional
Probab=85.56 E-value=47 Score=34.16 Aligned_cols=189 Identities=12% Similarity=0.035 Sum_probs=91.7
Q ss_pred cceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE-ECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCC
Q 011542 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (483)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p 124 (483)
..++++|..+++-..+..... . ....... .+.+|++.....+ ..++|.+|..+++..++.. .+
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~---------~-~~~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~---~~ 286 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPR---------H-NGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTD---GR 286 (429)
T ss_pred cEEEEEECCCCCeEEccCCCC---------C-cCCeEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccC---CC
Confidence 568889988877666543211 0 1111222 2345555433222 2359999999988877763 11
Q ss_pred CCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEeCC-EEEEEccCCCCCCcc
Q 011542 125 SPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK-RLLIYGGRGGGGPIM 203 (483)
Q Consensus 125 ~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~ 203 (483)
. .........+++.++|..... ....+|.+|+.+..-+++...+ .........-++ .|++.+.. ...
T Consensus 287 ~--~~~~~~wSPDG~~I~f~s~~~--g~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~-~g~--- 354 (429)
T PRK03629 287 S--NNTEPTWFPDSQNLAYTSDQA--GRPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSN-GGQ--- 354 (429)
T ss_pred C--CcCceEECCCCCEEEEEeCCC--CCceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEcc-CCC---
Confidence 1 111222233444344433211 1347899999988777775211 111111222244 44444332 211
Q ss_pred cceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEc
Q 011542 204 GDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRL 282 (483)
Q Consensus 204 ~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v 282 (483)
..++.+|+++..++.+.... . -.. ....-+++.+++.+.... ...+++.+.+...=..+
T Consensus 355 ------~~I~~~dl~~g~~~~Lt~~~---~-~~~-p~~SpDG~~i~~~s~~~~---------~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 355 ------QHIAKQDLATGGVQVLTDTF---L-DET-PSIAPNGTMVIYSSSQGM---------GSVLNLVSTDGRFKARL 413 (429)
T ss_pred ------ceEEEEECCCCCeEEeCCCC---C-CCC-ceECCCCCEEEEEEcCCC---------ceEEEEEECCCCCeEEC
Confidence 23455688888888776211 0 011 112245555666554321 13466667654443444
No 102
>PRK02889 tolB translocation protein TolB; Provisional
Probab=85.14 E-value=48 Score=33.98 Aligned_cols=147 Identities=13% Similarity=0.118 Sum_probs=72.4
Q ss_pred ccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcC
Q 011542 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (483)
Q Consensus 102 ~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~ 180 (483)
..+|++|+.+++=..+.. .+.. ..+.+.-.|+ +|++....++ ..++|.+|..+...+++. ... ....
T Consensus 220 ~~I~~~dl~~g~~~~l~~---~~g~--~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt---~~~-~~~~ 287 (427)
T PRK02889 220 PVVYVHDLATGRRRVVAN---FKGS--NSAPAWSPDGRTLAVALSRDG---NSQIYTVNADGSGLRRLT---QSS-GIDT 287 (427)
T ss_pred cEEEEEECCCCCEEEeec---CCCC--ccceEECCCCCEEEEEEccCC---CceEEEEECCCCCcEECC---CCC-CCCc
Confidence 469999998886555542 2211 1122222343 5555443332 357999999888877765 211 1111
Q ss_pred ceEEEe-CC-EEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCC
Q 011542 181 HTATMV-EK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGW 258 (483)
Q Consensus 181 ~~~~~~-~~-~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 258 (483)
..... ++ .|++.....+. ..++.++..+...+.+...+.. ....+....+..|+.......
T Consensus 288 -~~~wSpDG~~l~f~s~~~g~----------~~Iy~~~~~~g~~~~lt~~g~~---~~~~~~SpDG~~Ia~~s~~~g--- 350 (427)
T PRK02889 288 -EPFFSPDGRSIYFTSDRGGA----------PQIYRMPASGGAAQRVTFTGSY---NTSPRISPDGKLLAYISRVGG--- 350 (427)
T ss_pred -CeEEcCCCCEEEEEecCCCC----------cEEEEEECCCCceEEEecCCCC---cCceEECCCCCEEEEEEccCC---
Confidence 12222 44 45443322111 2234446666666666532210 011111123445544333211
Q ss_pred CcccceeeCcEEEEEcCCCceEEccC
Q 011542 259 LSRYDIYYNDTIILDRLSAQWKRLPI 284 (483)
Q Consensus 259 ~~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (483)
...++++|+.+.....+..
T Consensus 351 -------~~~I~v~d~~~g~~~~lt~ 369 (427)
T PRK02889 351 -------AFKLYVQDLATGQVTALTD 369 (427)
T ss_pred -------cEEEEEEECCCCCeEEccC
Confidence 1368999998888777653
No 103
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.64 E-value=49 Score=33.64 Aligned_cols=135 Identities=13% Similarity=0.133 Sum_probs=66.3
Q ss_pred ceEEceeCCCCCCCCC-C-CcceeEEE--ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcc
Q 011542 3 YWVRASSSDFGGTVPQ-P-RSGHSAVN--IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRA 78 (483)
Q Consensus 3 ~W~~~~~~~~~g~~p~-~-R~~h~~~~--~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~ 78 (483)
.|+++. .|. + +.-..+.. .+++..+++|-.. -+..=+-.-.+|........ ........
T Consensus 76 ~W~q~~-------~p~~~~~~L~~V~F~~~d~~~GwAVG~~G------~IL~T~DGG~tW~~~~~~~~----~~~~~~~~ 138 (398)
T PLN00033 76 EWEQVD-------LPIDPGVVLLDIAFVPDDPTHGFLLGTRQ------TLLETKDGGKTWVPRSIPSA----EDEDFNYR 138 (398)
T ss_pred ccEEee-------cCCCCCCceEEEEeccCCCCEEEEEcCCC------EEEEEcCCCCCceECccCcc----cccccccc
Confidence 688885 222 2 23344444 2445788888631 12222223458988642110 00111112
Q ss_pred eeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEE
Q 011542 79 FHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVL 158 (483)
Q Consensus 79 ~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y 158 (483)
...+...++.+|+.|-.. -++.=.=.-.+|+.++....+|.. .+....++++.++++|.. ..+++-
T Consensus 139 l~~v~f~~~~g~~vG~~G------~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~------G~v~~S 204 (398)
T PLN00033 139 FNSISFKGKEGWIIGKPA------ILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE------GAIYVT 204 (398)
T ss_pred eeeeEEECCEEEEEcCce------EEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEecc------ceEEEE
Confidence 344555677888886421 111112234689987642223333 233444555567787732 224544
Q ss_pred ECCCCceEEe
Q 011542 159 DTISLEWMQL 168 (483)
Q Consensus 159 d~~t~~W~~i 168 (483)
+-.-.+|+.+
T Consensus 205 ~D~G~tW~~~ 214 (398)
T PLN00033 205 SNAGRNWKAA 214 (398)
T ss_pred CCCCCCceEc
Confidence 4455689986
No 104
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=84.59 E-value=19 Score=36.08 Aligned_cols=244 Identities=11% Similarity=0.027 Sum_probs=107.5
Q ss_pred eeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEE-ccccCCCCC
Q 011542 23 HSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIF-GGRFGSRRL 101 (483)
Q Consensus 23 h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~-GG~~~~~~~ 101 (483)
+.-+...||+-+||+|-.+ -...++..|..+.+=++++.-. .....+...+.-++.+|.+ .+
T Consensus 39 ~~~~ft~dG~kllF~s~~d--g~~nly~lDL~t~~i~QLTdg~--------g~~~~g~~~s~~~~~~~Yv~~~------- 101 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFD--GNRNLYLLDLATGEITQLTDGP--------GDNTFGGFLSPDDRALYYVKNG------- 101 (386)
T ss_dssp TS--B-TTS-EEEEEE-TT--SS-EEEEEETTT-EEEE---SS---------B-TTT-EE-TTSSEEEEEETT-------
T ss_pred cCCCcCCCCCEEEEEeccC--CCcceEEEEcccCEEEECccCC--------CCCccceEEecCCCeEEEEECC-------
Confidence 3444456677777766432 2357899999999999987421 1122222222234566544 33
Q ss_pred ccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCC----C--------------CcCCccEEEEECCCC
Q 011542 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWD----G--------------KKWLSDVYVLDTISL 163 (483)
Q Consensus 102 ~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~----~--------------~~~~~~v~~yd~~t~ 163 (483)
..++..|+.|.+=+.+.. .|..-..+...++..+.-.++|=.. . ......+...|+.|+
T Consensus 102 ~~l~~vdL~T~e~~~vy~---~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG 178 (386)
T PF14583_consen 102 RSLRRVDLDTLEERVVYE---VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG 178 (386)
T ss_dssp TEEEEEETTT--EEEEEE-----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-
T ss_pred CeEEEEECCcCcEEEEEE---CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC
Confidence 357888888887666654 5555444434333222222323110 0 123456788899998
Q ss_pred ceEEeccCCCCCCCCcCceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE
Q 011542 164 EWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS 242 (483)
Q Consensus 164 ~W~~i~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~ 242 (483)
+.+.+-... .-.+|.-..= +..+++|.=.+.-..+-.-+|.+ |.+......+.. ..+....+|-...
T Consensus 179 ~~~~v~~~~----~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i------~~dg~~~~~v~~--~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 179 ERKVVFEDT----DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTI------NTDGSNVKKVHR--RMEGESVGHEFWV 246 (386)
T ss_dssp -EEEEEEES----S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEE------ETTS---EESS-----TTEEEEEEEE-
T ss_pred ceeEEEecC----ccccCcccCCCCCCEEEEeccCCcceeceEEEEE------EcCCCcceeeec--CCCCccccccccc
Confidence 887764211 1112322221 34566663222222122234444 666555555542 3445566776666
Q ss_pred eCCE-EEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEccCC
Q 011542 243 GGHY-LLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFD 311 (483)
Q Consensus 243 ~~~~-i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~ 311 (483)
.++. |+-.+.... + ...-+..||+.+..=+.+..+ ++..|-.+..++++++--|.+
T Consensus 247 ~DG~~i~y~~~~~~-~-------~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 247 PDGSTIWYDSYTPG-G-------QDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TTSS-EEEEEEETT-T---------EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCEEEEEeecCC-C-------CceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCC
Confidence 5554 333333222 1 112377788887654444433 346677788888888877754
No 105
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=83.61 E-value=17 Score=30.27 Aligned_cols=85 Identities=14% Similarity=0.074 Sum_probs=53.4
Q ss_pred EEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCC-cCCccEEEE-EC
Q 011542 83 VAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK-KWLSDVYVL-DT 160 (483)
Q Consensus 83 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~y-d~ 160 (483)
+.++|-+|...-. .....+.+.+||..+.+|+.+...............+.+ +|+|-++.-.... ...-++|++ |.
T Consensus 2 icinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 2 ICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEY-KGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred EEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEe-CCeEEEEEecCCCCcceEEEEEeecc
Confidence 3567888777655 333445689999999999988742112233444455555 4477776544332 234567877 56
Q ss_pred CCCceEEec
Q 011542 161 ISLEWMQLP 169 (483)
Q Consensus 161 ~t~~W~~i~ 169 (483)
.+.+|.+..
T Consensus 80 ~k~~Wsk~~ 88 (129)
T PF08268_consen 80 EKQEWSKKH 88 (129)
T ss_pred ccceEEEEE
Confidence 678999875
No 106
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=80.30 E-value=61 Score=31.67 Aligned_cols=104 Identities=10% Similarity=-0.034 Sum_probs=50.8
Q ss_pred EEEEEcccCCCccccceEEEEcCC-CcEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCCCCccEEEEE
Q 011542 32 KVVVFGGLVDKRFLSDVVVYDIDN-KLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRRLGDFWVLD 108 (483)
Q Consensus 32 ~l~v~GG~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~~~~~~~yd 108 (483)
.+|+..+.+ ..+.+||..+ +++..+..... ....+.++.. +..||+.+. . .+.+..|+
T Consensus 3 ~~y~~~~~~-----~~I~~~~~~~~g~l~~~~~~~~---------~~~~~~l~~spd~~~lyv~~~-~----~~~i~~~~ 63 (330)
T PRK11028 3 IVYIASPES-----QQIHVWNLNHEGALTLLQVVDV---------PGQVQPMVISPDKRHLYVGVR-P----EFRVLSYR 63 (330)
T ss_pred EEEEEcCCC-----CCEEEEEECCCCceeeeeEEec---------CCCCccEEECCCCCEEEEEEC-C----CCcEEEEE
Confidence 466665432 4577888863 57776654422 1111222232 445676433 2 24566777
Q ss_pred CC-CCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCC
Q 011542 109 TD-IWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTIS 162 (483)
Q Consensus 109 ~~-t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t 162 (483)
+. ++++..+.. .+.+..-+.++...++ .+|+.. .. .+.+.+|++.+
T Consensus 64 ~~~~g~l~~~~~---~~~~~~p~~i~~~~~g~~l~v~~-~~----~~~v~v~~~~~ 111 (330)
T PRK11028 64 IADDGALTFAAE---SPLPGSPTHISTDHQGRFLFSAS-YN----ANCVSVSPLDK 111 (330)
T ss_pred ECCCCceEEeee---ecCCCCceEEEECCCCCEEEEEE-cC----CCeEEEEEECC
Confidence 75 456665542 2222111223333343 566653 21 35577787754
No 107
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=79.41 E-value=76 Score=32.28 Aligned_cols=218 Identities=11% Similarity=0.105 Sum_probs=102.3
Q ss_pred CcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEEEE
Q 011542 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWVLD 108 (483)
Q Consensus 30 ~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~yd 108 (483)
++..|++|-. + -++.=+-.-.+|..++.... .|.+ .+....+ ++.+++.|... .+++=+
T Consensus 146 ~~~g~~vG~~-G-----~il~T~DgG~tW~~~~~~~~------~p~~--~~~i~~~~~~~~~ivg~~G------~v~~S~ 205 (398)
T PLN00033 146 GKEGWIIGKP-A-----ILLHTSDGGETWERIPLSPK------LPGE--PVLIKATGPKSAEMVTDEG------AIYVTS 205 (398)
T ss_pred CCEEEEEcCc-e-----EEEEEcCCCCCceECccccC------CCCC--ceEEEEECCCceEEEeccc------eEEEEC
Confidence 4578887632 1 12222223468998764211 1222 2233334 45677777422 244444
Q ss_pred CCCCeEEEeecCC-CCCC--------------CCcccEEEEECCcEEEEEecCCCCcCCccEEE-EECCCCceEEeccCC
Q 011542 109 TDIWQWSELTSFG-DLPS--------------PRDFAAASAIGNRKIVMYGGWDGKKWLSDVYV-LDTISLEWMQLPVTG 172 (483)
Q Consensus 109 ~~t~~W~~l~~~~-~~p~--------------~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~-yd~~t~~W~~i~~~~ 172 (483)
-...+|..+.... ..|. .-..+.+....++.++++|-.. .+++ .|.-...|+.+.
T Consensus 206 D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G------~~~~s~d~G~~~W~~~~--- 276 (398)
T PLN00033 206 NAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG------NFYLTWEPGQPYWQPHN--- 276 (398)
T ss_pred CCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc------cEEEecCCCCcceEEec---
Confidence 4456898762100 0011 0112223334555666666321 2333 233333489885
Q ss_pred CCCCCCcCceEEE-eCCEEEEEccCCCCCCcccceecccccccccCCCC-----CeEEeccCCCCCCCCeee-EEEE-eC
Q 011542 173 SVPPPRCGHTATM-VEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETP-----GWTQLKLPGQAPSSRCGH-TITS-GG 244 (483)
Q Consensus 173 ~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~-----~W~~~~~~g~~p~~r~~~-~~~~-~~ 244 (483)
.+.++.-.++.. .++.+++.|....- +.. +.... +|..+. .+..+... ++.. .+
T Consensus 277 -~~~~~~l~~v~~~~dg~l~l~g~~G~l-------~~S------~d~G~~~~~~~f~~~~----~~~~~~~l~~v~~~~d 338 (398)
T PLN00033 277 -RASARRIQNMGWRADGGLWLLTRGGGL-------YVS------KGTGLTEEDFDFEEAD----IKSRGFGILDVGYRSK 338 (398)
T ss_pred -CCCccceeeeeEcCCCCEEEEeCCceE-------EEe------cCCCCcccccceeecc----cCCCCcceEEEEEcCC
Confidence 333444344433 36788888754221 011 22223 344443 22223222 2323 46
Q ss_pred CEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEE-CCEEEEEcc
Q 011542 245 HYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFGG 309 (483)
Q Consensus 245 ~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~-~~~i~v~GG 309 (483)
+.+++.|.... +++-...-++|++.......+...+ .+... +++.|+.|-
T Consensus 339 ~~~~a~G~~G~-------------v~~s~D~G~tW~~~~~~~~~~~~ly--~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 339 KEAWAAGGSGI-------------LLRSTDGGKSWKRDKGADNIAANLY--SVKFFDDKKGFVLGN 389 (398)
T ss_pred CcEEEEECCCc-------------EEEeCCCCcceeEccccCCCCccee--EEEEcCCCceEEEeC
Confidence 68888886532 4444556789999764321222222 34433 478888864
No 108
>PLN00181 protein SPA1-RELATED; Provisional
Probab=77.91 E-value=1.2e+02 Score=33.87 Aligned_cols=64 Identities=13% Similarity=-0.052 Sum_probs=33.4
Q ss_pred CEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEE-CCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 87 CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAI-GNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 87 ~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
+..++.|+.++ .+.++|..+++-...-. . ....-.+++.. .++.+++.||.++ .+.+||+.+..
T Consensus 545 ~~~las~~~Dg-----~v~lWd~~~~~~~~~~~---~-H~~~V~~l~~~p~~~~~L~Sgs~Dg-----~v~iWd~~~~~ 609 (793)
T PLN00181 545 KSQVASSNFEG-----VVQVWDVARSQLVTEMK---E-HEKRVWSIDYSSADPTLLASGSDDG-----SVKLWSINQGV 609 (793)
T ss_pred CCEEEEEeCCC-----eEEEEECCCCeEEEEec---C-CCCCEEEEEEcCCCCCEEEEEcCCC-----EEEEEECCCCc
Confidence 44555565543 47788988765322211 1 11112222222 2456788887644 37778887654
No 109
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=76.83 E-value=77 Score=30.93 Aligned_cols=137 Identities=13% Similarity=0.154 Sum_probs=75.6
Q ss_pred CEEEEEccccC--CC--CC-ccEEEEECCCC-----eEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEE
Q 011542 87 CHMFIFGGRFG--SR--RL-GDFWVLDTDIW-----QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVY 156 (483)
Q Consensus 87 ~~iyv~GG~~~--~~--~~-~~~~~yd~~t~-----~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~ 156 (483)
...+++|..-. .. .. ..+.+|+.... +...+.. ....-.-++++.+++ ++.+.-| +.+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~---~~~~g~V~ai~~~~~-~lv~~~g-------~~l~ 110 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS---TEVKGPVTAICSFNG-RLVVAVG-------NKLY 110 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE---EEESS-EEEEEEETT-EEEEEET-------TEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE---EeecCcceEhhhhCC-EEEEeec-------CEEE
Confidence 46666665421 11 12 56899999884 6666543 112222456666755 6655544 4678
Q ss_pred EEECCCCc-eEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCC
Q 011542 157 VLDTISLE-WMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSR 235 (483)
Q Consensus 157 ~yd~~t~~-W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r 235 (483)
.|+....+ +.... ....+-...++...++.|++ |....+ -.+..|+.+..+-..+. ..+.++
T Consensus 111 v~~l~~~~~l~~~~---~~~~~~~i~sl~~~~~~I~v-gD~~~s----------v~~~~~~~~~~~l~~va---~d~~~~ 173 (321)
T PF03178_consen 111 VYDLDNSKTLLKKA---FYDSPFYITSLSVFKNYILV-GDAMKS----------VSLLRYDEENNKLILVA---RDYQPR 173 (321)
T ss_dssp EEEEETTSSEEEEE---EE-BSSSEEEEEEETTEEEE-EESSSS----------EEEEEEETTTE-EEEEE---EESS-B
T ss_pred EEEccCcccchhhh---eecceEEEEEEeccccEEEE-EEcccC----------EEEEEEEccCCEEEEEE---ecCCCc
Confidence 88888887 88876 55555566666667886665 432211 12335576666667666 345566
Q ss_pred eeeEEEEe-CCEEEEEcC
Q 011542 236 CGHTITSG-GHYLLLFGG 252 (483)
Q Consensus 236 ~~~~~~~~-~~~i~v~GG 252 (483)
...++... ++. .++++
T Consensus 174 ~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 174 WVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp EEEEEEEE-SSS-EEEEE
T ss_pred cEEEEEEecCCc-EEEEE
Confidence 65555554 444 44444
No 110
>PRK02889 tolB translocation protein TolB; Provisional
Probab=74.78 E-value=1.1e+02 Score=31.49 Aligned_cols=160 Identities=15% Similarity=0.079 Sum_probs=78.6
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~y 107 (483)
.|++.++|....+. ...+|++|+.+++=..+... +. ...+....- +.+|++.....+ ..++|.+
T Consensus 205 PDG~~la~~s~~~~--~~~I~~~dl~~g~~~~l~~~---------~g-~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~ 269 (427)
T PRK02889 205 PDGTKLAYVSFESK--KPVVYVHDLATGRRRVVANF---------KG-SNSAPAWSPDGRTLAVALSRDG---NSQIYTV 269 (427)
T ss_pred CCCCEEEEEEccCC--CcEEEEEECCCCCEEEeecC---------CC-CccceEECCCCCEEEEEEccCC---CceEEEE
Confidence 44554444433221 24699999988865555422 10 111122222 345554333222 2479999
Q ss_pred ECCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe
Q 011542 108 DTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV 186 (483)
Q Consensus 108 d~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~ 186 (483)
|..++...++... . ... ...+...|+ .|++.....+ ...+|.+|..+...+.+...+ .+.......
T Consensus 270 d~~~~~~~~lt~~---~-~~~-~~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~S 336 (427)
T PRK02889 270 NADGSGLRRLTQS---S-GID-TEPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVTFTG-----SYNTSPRIS 336 (427)
T ss_pred ECCCCCcEECCCC---C-CCC-cCeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEecCC-----CCcCceEEC
Confidence 9988776666431 1 111 112223344 4544332222 346888998888887775222 111122222
Q ss_pred -CC-EEEEEccCCCCCCcccceecccccccccCCCCCeEEec
Q 011542 187 -EK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLK 226 (483)
Q Consensus 187 -~~-~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~ 226 (483)
++ .|+...... .. ..+..+|+.+.....+.
T Consensus 337 pDG~~Ia~~s~~~-g~---------~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 337 PDGKLLAYISRVG-GA---------FKLYVQDLATGQVTALT 368 (427)
T ss_pred CCCCEEEEEEccC-Cc---------EEEEEEECCCCCeEEcc
Confidence 34 455443321 11 24556688877776664
No 111
>PRK04043 tolB translocation protein TolB; Provisional
Probab=74.27 E-value=1.1e+02 Score=31.41 Aligned_cols=151 Identities=11% Similarity=0.077 Sum_probs=82.4
Q ss_pred cceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE-ECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCC
Q 011542 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (483)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p 124 (483)
.++|++|+.+++=+.+.... ......... .+.+|.+.-...+ ..++|.+|..++.+++++. .+
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~----------g~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~---~~ 276 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQ----------GMLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITN---YP 276 (419)
T ss_pred CEEEEEECCCCcEEEEecCC----------CcEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEccc---CC
Confidence 48999999998777775321 111111222 2445655433222 3579999999999998874 22
Q ss_pred CCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEeCC-EEEEEccCCCCCCc
Q 011542 125 SPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK-RLLIYGGRGGGGPI 202 (483)
Q Consensus 125 ~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~ 202 (483)
. .........|+ +|++.-...+ ...+|.+|..+++.+++...+. ... ...-++ .|.+.... .....
T Consensus 277 ~--~d~~p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~-~~~~~ 344 (419)
T PRK04043 277 G--IDVNGNFVEDDKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRE-TNNEF 344 (419)
T ss_pred C--ccCccEECCCCCEEEEEECCCC---CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcC-CCccc
Confidence 1 11112222333 6766654422 3579999999999988863221 122 222244 44444322 21111
Q ss_pred ccceecccccccccCCCCCeEEecc
Q 011542 203 MGDLWALKGLIEEENETPGWTQLKL 227 (483)
Q Consensus 203 ~~d~~~l~~~~~yd~~~~~W~~~~~ 227 (483)
... ...++.+|+++..++.+..
T Consensus 345 ~~~---~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 345 GKN---TFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred CCC---CcEEEEEECCCCCeEECCC
Confidence 000 1345556888888888763
No 112
>PRK01742 tolB translocation protein TolB; Provisional
Probab=73.97 E-value=1.1e+02 Score=31.35 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=34.6
Q ss_pred ccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEec-CCCCcCCccEEEEECCCCceEEec
Q 011542 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGG-WDGKKWLSDVYVLDTISLEWMQLP 169 (483)
Q Consensus 102 ~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG-~~~~~~~~~v~~yd~~t~~W~~i~ 169 (483)
..++.+|..++.-..+.. .+.. ..+.+...|++.++++. .++. .++|.+|+.++..+++.
T Consensus 228 ~~i~i~dl~tg~~~~l~~---~~g~--~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~~~~~lt 288 (429)
T PRK01742 228 SQLVVHDLRSGARKVVAS---FRGH--NGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGGTPSQLT 288 (429)
T ss_pred cEEEEEeCCCCceEEEec---CCCc--cCceeECCCCCEEEEEEecCCc---EEEEEEECCCCCeEeec
Confidence 458999998887666653 2211 11223334444444433 3222 35889999888877765
No 113
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=72.93 E-value=84 Score=29.49 Aligned_cols=112 Identities=15% Similarity=0.084 Sum_probs=55.4
Q ss_pred EEEECCc-EEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE-ECCEEEEEccccCCCCCc
Q 011542 25 AVNIGKS-KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSRRLG 102 (483)
Q Consensus 25 ~~~~~~~-~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~~iyv~GG~~~~~~~~ 102 (483)
++...++ .+|+.++.+ +.+.+||+.+.+....-.. ...++ ..++. .++.+|+.++.+ +
T Consensus 36 l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~--------~~~~~--~~~~~~~g~~l~~~~~~~-----~ 95 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDS-----DTIQVIDLATGEVIGTLPS--------GPDPE--LFALHPNGKILYIANEDD-----N 95 (300)
T ss_pred eEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEeccC--------CCCcc--EEEECCCCCEEEEEcCCC-----C
Confidence 3333444 466666532 4588899988766442111 11111 11222 234566665422 2
Q ss_pred cEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCce
Q 011542 103 DFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEW 165 (483)
Q Consensus 103 ~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 165 (483)
.+.+||+.+.+-... .+......+++...++.+++++..+. +.+..||..+.+-
T Consensus 96 ~l~~~d~~~~~~~~~-----~~~~~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~~ 149 (300)
T TIGR03866 96 LVTVIDIETRKVLAE-----IPVGVEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTYEI 149 (300)
T ss_pred eEEEEECCCCeEEeE-----eeCCCCcceEEECCCCCEEEEEecCC----CeEEEEeCCCCeE
Confidence 588999987542211 11111123344445566777765422 2356678776543
No 114
>PTZ00421 coronin; Provisional
Probab=69.95 E-value=1.5e+02 Score=31.17 Aligned_cols=64 Identities=9% Similarity=-0.033 Sum_probs=35.8
Q ss_pred CEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 87 CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 87 ~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
+.+++.||.++ .+.++|+.+++-...-. .... .-.+++...++.+++.|+.++ .+.+||+.+++
T Consensus 138 ~~iLaSgs~Dg-----tVrIWDl~tg~~~~~l~--~h~~--~V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGADM-----VVNVWDVERGKAVEVIK--CHSD--QITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCCC-----EEEEEECCCCeEEEEEc--CCCC--ceEEEEEECCCCEEEEecCCC-----EEEEEECCCCc
Confidence 45777776543 47788988764322110 1111 122233334567788887543 47789988765
No 115
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=68.75 E-value=1.3e+02 Score=29.85 Aligned_cols=193 Identities=15% Similarity=0.145 Sum_probs=91.4
Q ss_pred eEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEE-EECCEEEEEccccCCCCCccEEEE--ECCCCeEEEeecCCCCC
Q 011542 48 VVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAV-AIDCHMFIFGGRFGSRRLGDFWVL--DTDIWQWSELTSFGDLP 124 (483)
Q Consensus 48 ~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~-~~~~~iyv~GG~~~~~~~~~~~~y--d~~t~~W~~l~~~~~~p 124 (483)
++.||..++++..+..... ...|- +.+. ..++.||+..... .....+..| +.++++.+.+.. .+
T Consensus 17 ~~~~d~~~g~l~~~~~~~~------~~~Ps--~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~---~~ 83 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVAE------GENPS--WLAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNS---VP 83 (345)
T ss_dssp EEEEETTTTEEEEEEEEEE------SSSEC--CEEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEE---EE
T ss_pred EEEEcCCCCCceEeeeecC------CCCCc--eEEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEeee---ec
Confidence 4456679999988775321 11111 1111 1356788885543 122345555 455578877764 33
Q ss_pred CCCcccEEEEE--CCcEEEEEecCCCCcCCccEEEEECCCC-ceEEec----c--CCCC---CCCCcCceEEEe--CCEE
Q 011542 125 SPRDFAAASAI--GNRKIVMYGGWDGKKWLSDVYVLDTISL-EWMQLP----V--TGSV---PPPRCGHTATMV--EKRL 190 (483)
Q Consensus 125 ~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~t~-~W~~i~----~--~~~~---p~~r~~~~~~~~--~~~l 190 (483)
..-...+-+.+ .++.+|+.- +. ...+.+|++..+ +-.... . .++. ...-.-|.+... ++.+
T Consensus 84 ~~g~~p~~i~~~~~g~~l~van-y~----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v 158 (345)
T PF10282_consen 84 SGGSSPCHIAVDPDGRFLYVAN-YG----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV 158 (345)
T ss_dssp ESSSCEEEEEECTTSSEEEEEE-TT----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE
T ss_pred cCCCCcEEEEEecCCCEEEEEE-cc----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEE
Confidence 22222222333 333666643 21 344677777653 222211 0 0111 122233555555 3467
Q ss_pred EEEccCCCCCCcccceecccccccccCCCCC--eEEeccCCCCCCC-CeeeEEEE-eCCEEEEEcCCCCCCCCcccceee
Q 011542 191 LIYGGRGGGGPIMGDLWALKGLIEEENETPG--WTQLKLPGQAPSS-RCGHTITS-GGHYLLLFGGHGTGGWLSRYDIYY 266 (483)
Q Consensus 191 yv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~--W~~~~~~g~~p~~-r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~ 266 (483)
|+..= . .+.+..|+.+... .+..... ..|.. .-.|.+.. .+..+||..-.+
T Consensus 159 ~v~dl-G-----------~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~s------------ 213 (345)
T PF10282_consen 159 YVPDL-G-----------ADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNELS------------ 213 (345)
T ss_dssp EEEET-T-----------TTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETTT------------
T ss_pred EEEec-C-----------CCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCCC------------
Confidence 77531 1 2556667776655 5443211 12222 22233332 345899987543
Q ss_pred CcEEEEEcC--CCceEEcc
Q 011542 267 NDTIILDRL--SAQWKRLP 283 (483)
Q Consensus 267 ~~v~~yd~~--~~~W~~v~ 283 (483)
+.|.+|+.. +..++.+.
T Consensus 214 ~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 214 NTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp TEEEEEEEETTTTEEEEEE
T ss_pred CcEEEEeecccCCceeEEE
Confidence 556666665 66666554
No 116
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=68.74 E-value=1.3e+02 Score=30.02 Aligned_cols=133 Identities=15% Similarity=0.182 Sum_probs=70.8
Q ss_pred EECCcEEEEEcccCCCccccceEEEEcCCCc--EEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccE
Q 011542 27 NIGKSKVVVFGGLVDKRFLSDVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDF 104 (483)
Q Consensus 27 ~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~ 104 (483)
++.++++|+... + ..++.+|+.+.+ |....... ...........+++||+- ..++ .+
T Consensus 65 ~~~dg~v~~~~~--~----G~i~A~d~~~g~~~W~~~~~~~---------~~~~~~~~~~~~G~i~~g-~~~g-----~~ 123 (370)
T COG1520 65 ADGDGTVYVGTR--D----GNIFALNPDTGLVKWSYPLLGA---------VAQLSGPILGSDGKIYVG-SWDG-----KL 123 (370)
T ss_pred EeeCCeEEEecC--C----CcEEEEeCCCCcEEecccCcCc---------ceeccCceEEeCCeEEEe-cccc-----eE
Confidence 667788998611 1 179999999887 97653210 001111112226676654 3333 68
Q ss_pred EEEECCCC--eEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCC--ceEEeccCCCCCCCCcC
Q 011542 105 WVLDTDIW--QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL--EWMQLPVTGSVPPPRCG 180 (483)
Q Consensus 105 ~~yd~~t~--~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~i~~~~~~p~~r~~ 180 (483)
++||..++ .|..-... . .+. ...+++.++.+|+.- ..+.++++|..|+ .|+.-...+ ...+..
T Consensus 124 y~ld~~~G~~~W~~~~~~---~-~~~-~~~~v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~--~~~~~~ 190 (370)
T COG1520 124 YALDASTGTLVWSRNVGG---S-PYY-ASPPVVGDGTVYVGT------DDGHLYALNADTGTLKWTYETPAP--LSLSIY 190 (370)
T ss_pred EEEECCCCcEEEEEecCC---C-eEE-ecCcEEcCcEEEEec------CCCeEEEEEccCCcEEEEEecCCc--cccccc
Confidence 99999644 58765531 1 222 233444565666643 2355888888754 587544221 222222
Q ss_pred ceEEEeCCEEEEE
Q 011542 181 HTATMVEKRLLIY 193 (483)
Q Consensus 181 ~~~~~~~~~lyv~ 193 (483)
...+...+.+|+-
T Consensus 191 ~~~~~~~~~vy~~ 203 (370)
T COG1520 191 GSPAIASGTVYVG 203 (370)
T ss_pred cCceeecceEEEe
Confidence 2222445666664
No 117
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=67.26 E-value=1.6e+02 Score=30.39 Aligned_cols=188 Identities=16% Similarity=0.275 Sum_probs=89.0
Q ss_pred CCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEE-ECCcEEEEEecCCCC-cCCccEEEEECCCCceEEeccCCCCCC
Q 011542 99 RRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASA-IGNRKIVMYGGWDGK-KWLSDVYVLDTISLEWMQLPVTGSVPP 176 (483)
Q Consensus 99 ~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~-~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~i~~~~~~p~ 176 (483)
....|+++++.+.++=++++-.| |...-++. ..++.|.|.--.-.. .....+|..+....+...+.
T Consensus 104 ~~taDly~v~~e~Ge~kRiTyfG-----r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~Ln------- 171 (668)
T COG4946 104 LQTADLYVVPSEDGEAKRITYFG-----RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLN------- 171 (668)
T ss_pred CccccEEEEeCCCCcEEEEEEec-----cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeecc-------
Confidence 34568999999999999888532 33322332 456788887543222 11233444444444344332
Q ss_pred CCcCceEEEeCCEEEEEccCCCC--------CCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEE
Q 011542 177 PRCGHTATMVEKRLLIYGGRGGG--------GPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLL 248 (483)
Q Consensus 177 ~r~~~~~~~~~~~lyv~GG~~~~--------~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~ 248 (483)
..-.+..+..+-+.|+|-.+.+ +..-..+|.- .....+++++- +++.... +-+++++++|
T Consensus 172 -lGpathiv~~dg~ivigRntydLP~WK~YkGGtrGklWis------~d~g~tFeK~v---dl~~~vS--~PmIV~~RvY 239 (668)
T COG4946 172 -LGPATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWIS------SDGGKTFEKFV---DLDGNVS--SPMIVGERVY 239 (668)
T ss_pred -CCceeeEEEeCCEEEEccCcccCcccccccCCccceEEEE------ecCCcceeeee---ecCCCcC--CceEEcceEE
Confidence 1112333344446666643221 1112223322 22223444443 2332222 3356889999
Q ss_pred EEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEccCCCCCccCcEEEEcCCCCc
Q 011542 249 LFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDP 328 (483)
Q Consensus 249 v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~~~~~~d~w~l~~~~d~ 328 (483)
.+.-...-| .+|.-|+..+--.+.....+ ++.--+..+++-+|| ..-.|+|.++++.|.
T Consensus 240 FlsD~eG~G----------nlYSvdldGkDlrrHTnFtd-----YY~R~~nsDGkrIvF------q~~GdIylydP~td~ 298 (668)
T COG4946 240 FLSDHEGVG----------NLYSVDLDGKDLRRHTNFTD-----YYPRNANSDGKRIVF------QNAGDIYLYDPETDS 298 (668)
T ss_pred EEecccCcc----------ceEEeccCCchhhhcCCchh-----ccccccCCCCcEEEE------ecCCcEEEeCCCcCc
Confidence 988665533 35666665544333332211 111112234444444 223567766666554
Q ss_pred ccc
Q 011542 329 IAK 331 (483)
Q Consensus 329 ~~~ 331 (483)
.++
T Consensus 299 lek 301 (668)
T COG4946 299 LEK 301 (668)
T ss_pred cee
Confidence 443
No 118
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=66.62 E-value=1.2e+02 Score=30.51 Aligned_cols=249 Identities=16% Similarity=0.105 Sum_probs=106.2
Q ss_pred ceeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEE-eeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCC
Q 011542 22 GHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWF-QPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRR 100 (483)
Q Consensus 22 ~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~ 100 (483)
.+.+++..||+.++.+.+ ..+.+.++|..+.+=. .++..+. ....+.+|.....+...+..|++--.+
T Consensus 80 ~~~i~~s~DG~~~~v~n~----~~~~v~v~D~~tle~v~~I~~~~~---~~~~~~~Rv~aIv~s~~~~~fVv~lkd---- 148 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANY----EPGTVSVIDAETLEPVKTIPTGGM---PVDGPESRVAAIVASPGRPEFVVNLKD---- 148 (369)
T ss_dssp EEEEEE--TTTEEEEEEE----ETTEEEEEETTT--EEEEEE--EE----TTTS---EEEEEE-SSSSEEEEEETT----
T ss_pred cceEEEcCCCCEEEEEec----CCCceeEeccccccceeecccccc---cccccCCCceeEEecCCCCEEEEEEcc----
Confidence 344444444554444433 2356888998776432 2222111 011144555433344456667765432
Q ss_pred CccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcC
Q 011542 101 LGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (483)
Q Consensus 101 ~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~ 180 (483)
...+|..|.....=..... ...++.-|-...-.+++.|+.+-. ..+.+-..|..+++=..+-..+..|.+..+
T Consensus 149 ~~~I~vVdy~d~~~~~~~~---i~~g~~~~D~~~dpdgry~~va~~----~sn~i~viD~~~~k~v~~i~~g~~p~~~~~ 221 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVTT---IKVGRFPHDGGFDPDGRYFLVAAN----GSNKIAVIDTKTGKLVALIDTGKKPHPGPG 221 (369)
T ss_dssp TTEEEEEETTTSSCEEEEE---EE--TTEEEEEE-TTSSEEEEEEG----GGTEEEEEETTTTEEEEEEE-SSSBEETTE
T ss_pred CCeEEEEEeccccccceee---ecccccccccccCcccceeeeccc----ccceeEEEeeccceEEEEeecccccccccc
Confidence 3468888865432111121 345666777666666555544422 245788899988876655434444444433
Q ss_pred ceEEEeC-CEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEe--CCEEEEEcCCCCCC
Q 011542 181 HTATMVE-KRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSG--GHYLLLFGGHGTGG 257 (483)
Q Consensus 181 ~~~~~~~-~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~--~~~i~v~GG~~~~~ 257 (483)
..+.... +.++..+|..... -....-+.+.. .+...|+.+. ..+....++.+... ...+|+---.+.
T Consensus 222 ~~~php~~g~vw~~~~~~~~~---~~~ig~~~v~v--~d~~~wkvv~---~I~~~G~glFi~thP~s~~vwvd~~~~~-- 291 (369)
T PF02239_consen 222 ANFPHPGFGPVWATSGLGYFA---IPLIGTDPVSV--HDDYAWKVVK---TIPTQGGGLFIKTHPDSRYVWVDTFLNP-- 291 (369)
T ss_dssp EEEEETTTEEEEEEEBSSSSE---EEEEE--TTT---STTTBTSEEE---EEE-SSSS--EE--TT-SEEEEE-TT-S--
T ss_pred ccccCCCcceEEeecccccee---cccccCCcccc--chhhcCeEEE---EEECCCCcceeecCCCCccEEeeccCCC--
Confidence 3333322 3556555543221 00000111212 2345687776 33433333343433 335666311111
Q ss_pred CCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEE-CCEEEEE
Q 011542 258 WLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLF 307 (483)
Q Consensus 258 ~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~-~~~i~v~ 307 (483)
-.+.+.++|.++.+ .+......+..|..|--..- |..+||-
T Consensus 292 -------~~~~v~viD~~tl~--~~~~i~~~~~~~~~h~ef~~dG~~v~vS 333 (369)
T PF02239_consen 292 -------DADTVQVIDKKTLK--VVKTITPGPGKRVVHMEFNPDGKEVWVS 333 (369)
T ss_dssp -------SHT-EEEEECCGTE--EEE-HHHHHT--EEEEEE-TTSSEEEEE
T ss_pred -------CCceEEEEECcCcc--eeEEEeccCCCcEeccEECCCCCEEEEE
Confidence 15789999988773 22221111223444444433 4566654
No 119
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=65.15 E-value=1.3e+02 Score=28.78 Aligned_cols=84 Identities=17% Similarity=0.026 Sum_probs=53.7
Q ss_pred cEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCce
Q 011542 103 DFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHT 182 (483)
Q Consensus 103 ~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~ 182 (483)
.+=.+||.|++=.+.+ ++.+-.-|..++-.|+..++.-+ -+.+-++|++|..-++.+....++..-- -+
T Consensus 84 aiGhLdP~tGev~~yp----Lg~Ga~Phgiv~gpdg~~Witd~------~~aI~R~dpkt~evt~f~lp~~~a~~nl-et 152 (353)
T COG4257 84 AIGHLDPATGEVETYP----LGSGASPHGIVVGPDGSAWITDT------GLAIGRLDPKTLEVTRFPLPLEHADANL-ET 152 (353)
T ss_pred cceecCCCCCceEEEe----cCCCCCCceEEECCCCCeeEecC------cceeEEecCcccceEEeecccccCCCcc-cc
Confidence 3567899999988877 66777777777766666666432 1268889999998888864333322222 22
Q ss_pred EEEe-CCEEEEEccCC
Q 011542 183 ATMV-EKRLLIYGGRG 197 (483)
Q Consensus 183 ~~~~-~~~lyv~GG~~ 197 (483)
+++. .+.|+..|-.+
T Consensus 153 ~vfD~~G~lWFt~q~G 168 (353)
T COG4257 153 AVFDPWGNLWFTGQIG 168 (353)
T ss_pred eeeCCCccEEEeeccc
Confidence 3333 46888887543
No 120
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=65.10 E-value=1.2e+02 Score=28.45 Aligned_cols=156 Identities=15% Similarity=0.206 Sum_probs=78.9
Q ss_pred EEECCcEEEEEcccCCCccccceEEEEcCC-CcEEeeeecCCCCCCCCCCCCcceeEEEE-E-CCEEEEEccccCCCCCc
Q 011542 26 VNIGKSKVVVFGGLVDKRFLSDVVVYDIDN-KLWFQPECTGNGSNGQVGPGPRAFHIAVA-I-DCHMFIFGGRFGSRRLG 102 (483)
Q Consensus 26 ~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~-~~~iyv~GG~~~~~~~~ 102 (483)
+.+.++.+++..=.........+..|+.+. .+|....... ........+.+ . ++.|+++-...... .
T Consensus 114 i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--------~~~~~~e~~~~~~~dG~l~~~~R~~~~~--~ 183 (275)
T PF13088_consen 114 IQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSGSPIP--------DGQGECEPSIVELPDGRLLAVFRTEGND--D 183 (275)
T ss_dssp EEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEEEECE--------CSEEEEEEEEEEETTSEEEEEEEECSST--E
T ss_pred eEecCCCEEEEEeeccccCcceEEEEeCCCCceeecccccc--------ccCCcceeEEEECCCCcEEEEEEccCCC--c
Confidence 345678888762111112234455566664 4698876431 22244444443 2 56888886543111 2
Q ss_pred cEEEEECC-CCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCc
Q 011542 103 DFWVLDTD-IWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGH 181 (483)
Q Consensus 103 ~~~~yd~~-t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~ 181 (483)
-...+..+ -.+|+...+. .+|.+.....++...++.++++.........-.++.-.-...+|..+..-.+-+...+++
T Consensus 184 ~~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y 262 (275)
T PF13088_consen 184 IYISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGY 262 (275)
T ss_dssp EEEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEE
T ss_pred EEEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEEC
Confidence 34445554 3579875421 356666555555666778888887322222222333333478898764211222222333
Q ss_pred e-EEEe-CCEEEE
Q 011542 182 T-ATMV-EKRLLI 192 (483)
Q Consensus 182 ~-~~~~-~~~lyv 192 (483)
. ++.. +++|||
T Consensus 263 ~~~~~~~dg~l~i 275 (275)
T PF13088_consen 263 PSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEEETTEEEE
T ss_pred CeeEEeCCCcCCC
Confidence 3 3334 568886
No 121
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=63.18 E-value=1.3e+02 Score=31.86 Aligned_cols=117 Identities=14% Similarity=0.104 Sum_probs=58.3
Q ss_pred CcEEEEEecCCCCcCCccEEEEECCCC--ceEEeccCC-CC-C---CCCcCceEEEeCCEEEEEccCCCCCCcccceecc
Q 011542 137 NRKIVMYGGWDGKKWLSDVYVLDTISL--EWMQLPVTG-SV-P---PPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWAL 209 (483)
Q Consensus 137 ~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~i~~~~-~~-p---~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l 209 (483)
++.||+... ...++.+|..|+ .|+.-.... .. + ........++.++++|+....
T Consensus 69 ~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d------------- 129 (527)
T TIGR03075 69 DGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD------------- 129 (527)
T ss_pred CCEEEEECC------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC-------------
Confidence 558888543 235899998875 487643110 00 0 001122345567888874321
Q ss_pred cccccccCCCC--CeEEeccCCCCC-CCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCC--ceEE
Q 011542 210 KGLIEEENETP--GWTQLKLPGQAP-SSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSA--QWKR 281 (483)
Q Consensus 210 ~~~~~yd~~~~--~W~~~~~~g~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~ 281 (483)
..+..+|..+. .|+.-.. ... ......+.++.++.||+-...... .....+..||.++. .|+.
T Consensus 130 g~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~~~-------~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 130 ARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITGISGGEF-------GVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CEEEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEeeccccc-------CCCcEEEEEECCCCceeEec
Confidence 22344576654 4654321 111 111223445677877764322111 12356888888765 4664
No 122
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=59.21 E-value=2.3e+02 Score=29.62 Aligned_cols=123 Identities=12% Similarity=0.050 Sum_probs=61.4
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCC--cEEeeeecCCCCCCCCCCCCc-ceeEEEEEC-CEEEEEccccCCCCCcc
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPR-AFHIAVAID-CHMFIFGGRFGSRRLGD 103 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~p~~R-~~h~~~~~~-~~iyv~GG~~~~~~~~~ 103 (483)
+.+++||+.... ..++++|..++ .|+.-..... ....+. .....++.+ ++||+... -..
T Consensus 59 v~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~-----~~~~~~~~~~g~~~~~~~~V~v~~~------~g~ 121 (488)
T cd00216 59 VVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPA-----DRGCCDVVNRGVAYWDPRKVFFGTF------DGR 121 (488)
T ss_pred EECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCc-----cccccccccCCcEEccCCeEEEecC------CCe
Confidence 334788876542 46889998876 4876432110 000000 111233445 78876432 235
Q ss_pred EEEEECCCC--eEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCC----cCCccEEEEECCCCc--eEEec
Q 011542 104 FWVLDTDIW--QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK----KWLSDVYVLDTISLE--WMQLP 169 (483)
Q Consensus 104 ~~~yd~~t~--~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~----~~~~~v~~yd~~t~~--W~~i~ 169 (483)
++.+|.+|+ .|+.-......+......+.++. ++.+| +|..+.. .....++.||..|++ |+.-.
T Consensus 122 v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 122 LVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVI-IGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred EEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEE-EeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 889998876 47654320000000011222333 44555 4533222 234578999998764 87643
No 123
>PRK10115 protease 2; Provisional
Probab=58.74 E-value=2.9e+02 Score=30.49 Aligned_cols=218 Identities=11% Similarity=-0.043 Sum_probs=105.8
Q ss_pred eeEEEECCcEEEEEcccCCC-ccccceEEEEcCCCcE--EeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCC
Q 011542 23 HSAVNIGKSKVVVFGGLVDK-RFLSDVVVYDIDNKLW--FQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGS 98 (483)
Q Consensus 23 h~~~~~~~~~l~v~GG~~~~-~~~~~~~~yd~~~~~W--~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~ 98 (483)
...+-..|+.-+++.-.... ....++|++++.+..- ..+-.. +........... +++..++...+
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e---------~~~~~~~~~~~s~d~~~l~i~~~~-- 243 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEE---------KDDTFYVSLHKTTSKHYVVIHLAS-- 243 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEee---------CCCCEEEEEEEcCCCCEEEEEEEC--
Confidence 34444555555555554332 2447899999988832 333221 111222223333 33332343332
Q ss_pred CCCccEEEEEC--CCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECC-CCceEEeccCCCCC
Q 011542 99 RRLGDFWVLDT--DIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI-SLEWMQLPVTGSVP 175 (483)
Q Consensus 99 ~~~~~~~~yd~--~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-t~~W~~i~~~~~~p 175 (483)
...+.++.|+. .+..|..+.+ .+... .+..... ++.+|+.--.+.. ...+...++. +.+|+.+- +..
T Consensus 244 ~~~~~~~l~~~~~~~~~~~~~~~---~~~~~-~~~~~~~-~~~ly~~tn~~~~--~~~l~~~~~~~~~~~~~l~---~~~ 313 (686)
T PRK10115 244 ATTSEVLLLDAELADAEPFVFLP---RRKDH-EYSLDHY-QHRFYLRSNRHGK--NFGLYRTRVRDEQQWEELI---PPR 313 (686)
T ss_pred CccccEEEEECcCCCCCceEEEE---CCCCC-EEEEEeC-CCEEEEEEcCCCC--CceEEEecCCCcccCeEEE---CCC
Confidence 23356888884 3344433321 22221 1222223 3488888655332 3346777776 67899886 221
Q ss_pred CCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE----eCCEEE-EE
Q 011542 176 PPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS----GGHYLL-LF 250 (483)
Q Consensus 176 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~----~~~~i~-v~ 250 (483)
..+.--.+...++.|++..-..+. ..+..+|..+.....+.. +.+........ ..+.++ .+
T Consensus 314 ~~~~i~~~~~~~~~l~~~~~~~g~----------~~l~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~ 379 (686)
T PRK10115 314 ENIMLEGFTLFTDWLVVEERQRGL----------TSLRQINRKTREVIGIAF----DDPAYVTWIAYNPEPETSRLRYGY 379 (686)
T ss_pred CCCEEEEEEEECCEEEEEEEeCCE----------EEEEEEcCCCCceEEecC----CCCceEeeecccCCCCCceEEEEE
Confidence 222222344457777776543321 344555665554444431 22222211111 112333 33
Q ss_pred cCCCCCCCCcccceeeCcEEEEEcCCCceEEccCC
Q 011542 251 GGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIG 285 (483)
Q Consensus 251 GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~ 285 (483)
.+.. ...++|.||+.+.+|+.+...
T Consensus 380 ss~~----------~P~~~y~~d~~~~~~~~l~~~ 404 (686)
T PRK10115 380 SSMT----------TPDTLFELDMDTGERRVLKQT 404 (686)
T ss_pred ecCC----------CCCEEEEEECCCCcEEEEEec
Confidence 3332 346799999998888877643
No 124
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=55.07 E-value=2e+02 Score=27.61 Aligned_cols=182 Identities=16% Similarity=0.066 Sum_probs=103.2
Q ss_pred ceEEEEcCCCcEEeeeecCCCCCCCCCCCCcce--e-EEEEE-CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCC
Q 011542 47 DVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAF--H-IAVAI-DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGD 122 (483)
Q Consensus 47 ~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~--h-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~ 122 (483)
.+-++|+++..-+..+ +|..+.. - +.+.. .++++..|- .+ . .=++||.++.-+..+
T Consensus 125 aI~R~dpkt~evt~f~----------lp~~~a~~nlet~vfD~~G~lWFt~q-~G--~---yGrLdPa~~~i~vfp---- 184 (353)
T COG4257 125 AIGRLDPKTLEVTRFP----------LPLEHADANLETAVFDPWGNLWFTGQ-IG--A---YGRLDPARNVISVFP---- 184 (353)
T ss_pred eeEEecCcccceEEee----------cccccCCCcccceeeCCCccEEEeec-cc--c---ceecCcccCceeeec----
Confidence 6778888887766654 2322221 1 22333 346666653 21 0 115677776655444
Q ss_pred CCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCC-cCceEEEe--CCEEEEEccCCCC
Q 011542 123 LPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPR-CGHTATMV--EKRLLIYGGRGGG 199 (483)
Q Consensus 123 ~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r-~~~~~~~~--~~~lyv~GG~~~~ 199 (483)
.|.+-.-+.+|+--|+.+|+.- -.-|-+-+.|+.+..=+.++ .|.+. .+.--+.. -+++++.--
T Consensus 185 aPqG~gpyGi~atpdGsvwyas-----lagnaiaridp~~~~aev~p----~P~~~~~gsRriwsdpig~~wittw---- 251 (353)
T COG4257 185 APQGGGPYGICATPDGSVWYAS-----LAGNAIARIDPFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWITTW---- 251 (353)
T ss_pred cCCCCCCcceEECCCCcEEEEe-----ccccceEEcccccCCcceec----CCCcccccccccccCccCcEEEecc----
Confidence 4555566778887788888862 12344667788777555553 23221 11111111 356666511
Q ss_pred CCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCc
Q 011542 200 GPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (483)
Q Consensus 200 ~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (483)
.--.+..||+....|..-..++.-|.+- ++-+ ..+++++.- .-.+.+-+||+.+.+
T Consensus 252 --------g~g~l~rfdPs~~sW~eypLPgs~arpy---s~rVD~~grVW~se------------a~agai~rfdpeta~ 308 (353)
T COG4257 252 --------GTGSLHRFDPSVTSWIEYPLPGSKARPY---SMRVDRHGRVWLSE------------ADAGAIGRFDPETAR 308 (353)
T ss_pred --------CCceeeEeCcccccceeeeCCCCCCCcc---eeeeccCCcEEeec------------cccCceeecCcccce
Confidence 1144667899999999987655433322 2333 334555521 234678999999999
Q ss_pred eEEccC
Q 011542 279 WKRLPI 284 (483)
Q Consensus 279 W~~v~~ 284 (483)
.+.++.
T Consensus 309 ftv~p~ 314 (353)
T COG4257 309 FTVLPI 314 (353)
T ss_pred EEEecC
Confidence 988765
No 125
>PRK10115 protease 2; Provisional
Probab=54.90 E-value=3.3e+02 Score=30.02 Aligned_cols=213 Identities=10% Similarity=0.058 Sum_probs=99.0
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCC-CCCccEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGS-RRLGDFWVL 107 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~-~~~~~~~~y 107 (483)
.|++.++++--.++....++++.|+.++... +. ..+..+ ...+..-+++-+++...... ..-.++|++
T Consensus 136 pdg~~la~~~d~~G~E~~~l~v~d~~tg~~l--~~--------~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 136 PDNTIMALAEDFLSRRQYGIRFRNLETGNWY--PE--------LLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred CCCCEEEEEecCCCcEEEEEEEEECCCCCCC--Cc--------cccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 3455555554334444556777777665311 10 011112 22222324443444433322 234679999
Q ss_pred ECCCCeE--EEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEEC--CCCceEEeccCCCCCCCCcCceE
Q 011542 108 DTDIWQW--SELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDT--ISLEWMQLPVTGSVPPPRCGHTA 183 (483)
Q Consensus 108 d~~t~~W--~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~--~t~~W~~i~~~~~~p~~r~~~~~ 183 (483)
++.|..- ..+-. -+............+++..++..... ..+.++.|+. .+..|..+. ..+.. .....
T Consensus 205 ~lgt~~~~d~lv~~---e~~~~~~~~~~~s~d~~~l~i~~~~~--~~~~~~l~~~~~~~~~~~~~~---~~~~~-~~~~~ 275 (686)
T PRK10115 205 TIGTPASQDELVYE---EKDDTFYVSLHKTTSKHYVVIHLASA--TTSEVLLLDAELADAEPFVFL---PRRKD-HEYSL 275 (686)
T ss_pred ECCCChhHCeEEEe---eCCCCEEEEEEEcCCCCEEEEEEECC--ccccEEEEECcCCCCCceEEE---ECCCC-CEEEE
Confidence 9988732 22322 11122222222232434334444322 3456888873 345544332 22221 11223
Q ss_pred EEeCCEEEEEccCCCCCCcccceecccccccccCC-CCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCccc
Q 011542 184 TMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENE-TPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRY 262 (483)
Q Consensus 184 ~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~-~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~ 262 (483)
...++.+|+.-...... ..+...++. ...|+.+.. ......--.+.+.++.|++..-...
T Consensus 276 ~~~~~~ly~~tn~~~~~---------~~l~~~~~~~~~~~~~l~~---~~~~~~i~~~~~~~~~l~~~~~~~g------- 336 (686)
T PRK10115 276 DHYQHRFYLRSNRHGKN---------FGLYRTRVRDEQQWEELIP---PRENIMLEGFTLFTDWLVVEERQRG------- 336 (686)
T ss_pred EeCCCEEEEEEcCCCCC---------ceEEEecCCCcccCeEEEC---CCCCCEEEEEEEECCEEEEEEEeCC-------
Confidence 33467888886543221 112333544 578988762 2122222244455777777653322
Q ss_pred ceeeCcEEEEEcCCCceEEcc
Q 011542 263 DIYYNDTIILDRLSAQWKRLP 283 (483)
Q Consensus 263 ~~~~~~v~~yd~~~~~W~~v~ 283 (483)
...++++|..+.....+.
T Consensus 337 ---~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 337 ---LTSLRQINRKTREVIGIA 354 (686)
T ss_pred ---EEEEEEEcCCCCceEEec
Confidence 345888887655555544
No 126
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=51.52 E-value=2.9e+02 Score=28.43 Aligned_cols=131 Identities=16% Similarity=0.133 Sum_probs=64.3
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEEC-CEEEEEccccCCCCCccEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAID-CHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~-~~iyv~GG~~~~~~~~~~~~y 107 (483)
.++.|++-||+++. +-.||+.+.+ ..+..... ..|..+ .++.-+ ..|...|| +.+-+.
T Consensus 164 ~~~hivvtGsYDg~-----vrl~DtR~~~-~~v~elnh-----g~pVe~---vl~lpsgs~iasAgG-------n~vkVW 222 (487)
T KOG0310|consen 164 ANDHIVVTGSYDGK-----VRLWDTRSLT-SRVVELNH-----GCPVES---VLALPSGSLIASAGG-------NSVKVW 222 (487)
T ss_pred CCCeEEEecCCCce-----EEEEEeccCC-ceeEEecC-----CCceee---EEEcCCCCEEEEcCC-------CeEEEE
Confidence 44679999998764 6778887763 22222211 122221 222223 34444455 346667
Q ss_pred ECCCCeEEEeecCCCCCCCCcc-----cEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCce
Q 011542 108 DTDIWQWSELTSFGDLPSPRDF-----AAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHT 182 (483)
Q Consensus 108 d~~t~~W~~l~~~~~~p~~r~~-----~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~ 182 (483)
|..++.= ++..+.. -+++...++.-.+-||.++. +-+|| +..|.-+. .+..|-.--+
T Consensus 223 Dl~~G~q--------ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-----VKVfd--~t~~Kvv~---s~~~~~pvLs 284 (487)
T KOG0310|consen 223 DLTTGGQ--------LLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-----VKVFD--TTNYKVVH---SWKYPGPVLS 284 (487)
T ss_pred EecCCce--------ehhhhhcccceEEEEEeecCCceEeecccccc-----eEEEE--ccceEEEE---eeecccceee
Confidence 7664421 2222221 12223345566677777654 66788 34455443 2222211122
Q ss_pred EEEe-CCEEEEEccCCC
Q 011542 183 ATMV-EKRLLIYGGRGG 198 (483)
Q Consensus 183 ~~~~-~~~lyv~GG~~~ 198 (483)
+.+. ++.-.++|..++
T Consensus 285 iavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 285 IAVSPDDQTVVIGMSNG 301 (487)
T ss_pred EEecCCCceEEEecccc
Confidence 3332 667778887654
No 127
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=51.42 E-value=3.1e+02 Score=28.69 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=38.6
Q ss_pred cEEEEEcccCCCccccceEEEEcCCC--cEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCC----CCCccE
Q 011542 31 SKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGS----RRLGDF 104 (483)
Q Consensus 31 ~~l~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~----~~~~~~ 104 (483)
++||+... ...++++|..++ .|+.-.... ..+......+.++.++.+|+ |..... .....+
T Consensus 111 ~~V~v~~~------~g~v~AlD~~TG~~~W~~~~~~~------~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v 177 (488)
T cd00216 111 RKVFFGTF------DGRLVALDAETGKQVWKFGNNDQ------VPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGAL 177 (488)
T ss_pred CeEEEecC------CCeEEEEECCCCCEeeeecCCCC------cCcceEecCCCEEECCEEEE-eccccccccCCCCcEE
Confidence 57776432 246889998876 587643110 00000112233455666665 432221 123468
Q ss_pred EEEECCCCe--EEEe
Q 011542 105 WVLDTDIWQ--WSEL 117 (483)
Q Consensus 105 ~~yd~~t~~--W~~l 117 (483)
+.+|..|++ |+.-
T Consensus 178 ~alD~~TG~~~W~~~ 192 (488)
T cd00216 178 RAYDVETGKLLWRFY 192 (488)
T ss_pred EEEECCCCceeeEee
Confidence 999998764 8653
No 128
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=51.29 E-value=3.2e+02 Score=29.98 Aligned_cols=112 Identities=14% Similarity=0.218 Sum_probs=61.0
Q ss_pred EECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE--ECCEEEEEccccCCCCCccE
Q 011542 27 NIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA--IDCHMFIFGGRFGSRRLGDF 104 (483)
Q Consensus 27 ~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~--~~~~iyv~GG~~~~~~~~~~ 104 (483)
.-.||.+.+.|+.++ .+-+||..++-... +..+ .-++++++. ..++..+..-.++. |
T Consensus 358 YSpDgq~iaTG~eDg-----KVKvWn~~SgfC~v--TFte---------Hts~Vt~v~f~~~g~~llssSLDGt-----V 416 (893)
T KOG0291|consen 358 YSPDGQLIATGAEDG-----KVKVWNTQSGFCFV--TFTE---------HTSGVTAVQFTARGNVLLSSSLDGT-----V 416 (893)
T ss_pred ECCCCcEEEeccCCC-----cEEEEeccCceEEE--Eecc---------CCCceEEEEEEecCCEEEEeecCCe-----E
Confidence 346788888888654 47788876654332 2211 223444433 24455554444432 4
Q ss_pred EEEECCCCe-EEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEE
Q 011542 105 WVLDTDIWQ-WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQ 167 (483)
Q Consensus 105 ~~yd~~t~~-W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~ 167 (483)
-.+|..... .+... .|.++...+.++-..|.|.++|+.+.. ++++++..|++-..
T Consensus 417 RAwDlkRYrNfRTft----~P~p~QfscvavD~sGelV~AG~~d~F----~IfvWS~qTGqllD 472 (893)
T KOG0291|consen 417 RAWDLKRYRNFRTFT----SPEPIQFSCVAVDPSGELVCAGAQDSF----EIFVWSVQTGQLLD 472 (893)
T ss_pred Eeeeecccceeeeec----CCCceeeeEEEEcCCCCEEEeeccceE----EEEEEEeecCeeee
Confidence 455554332 22333 567776666666555789999886432 24555555555443
No 129
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=51.12 E-value=2.2e+02 Score=26.96 Aligned_cols=223 Identities=13% Similarity=0.162 Sum_probs=89.7
Q ss_pred eEEEECCcEEEEEccc-C-CCccccceEEEE---cCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCC
Q 011542 24 SAVNIGKSKVVVFGGL-V-DKRFLSDVVVYD---IDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGS 98 (483)
Q Consensus 24 ~~~~~~~~~l~v~GG~-~-~~~~~~~~~~yd---~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~ 98 (483)
+|-+++| ++|.+=-. . .+..+.....|| .....|......+-.......-..---|+.+.+++.-|.+|=-+++
T Consensus 79 SMGv~~N-RLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD 157 (367)
T PF12217_consen 79 SMGVVGN-RLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGD 157 (367)
T ss_dssp -EEEETT-EEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-S
T ss_pred eeeeecc-eeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCC
Confidence 3445674 66654321 1 122222333344 4567887755433211101111234568889999988999866554
Q ss_pred CCCccE--EEEEC-----CCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEe-cCCCCcCCccEEEEECCCCceEEecc
Q 011542 99 RRLGDF--WVLDT-----DIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYG-GWDGKKWLSDVYVLDTISLEWMQLPV 170 (483)
Q Consensus 99 ~~~~~~--~~yd~-----~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~G-G~~~~~~~~~v~~yd~~t~~W~~i~~ 170 (483)
..-..+ ..|.. ..-.=++++. ......+..+ +-..++.+|+.- |..+...-+.+.+-+..-..|+.+.
T Consensus 158 ~sPRe~G~~yfs~~~~sp~~~vrr~i~s--ey~~~AsEPC-vkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr- 233 (367)
T PF12217_consen 158 VSPRELGFLYFSDAFASPGVFVRRIIPS--EYERNASEPC-VKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR- 233 (367)
T ss_dssp SSS-EEEEEEETTTTT-TT--EEEE--G--GG-TTEEEEE-EEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-
T ss_pred CCcceeeEEEecccccCCcceeeeechh--hhccccccch-hhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc-
Confidence 332222 22211 1112223332 1111222222 223456888876 4445456677888888888999986
Q ss_pred CCCCCCCCc--CceEEEeCCEEEEEccCCCCCC--------cc----cceecc-cccccccCCCCCeEEecc---CCCCC
Q 011542 171 TGSVPPPRC--GHTATMVEKRLLIYGGRGGGGP--------IM----GDLWAL-KGLIEEENETPGWTQLKL---PGQAP 232 (483)
Q Consensus 171 ~~~~p~~r~--~~~~~~~~~~lyv~GG~~~~~~--------~~----~d~~~l-~~~~~yd~~~~~W~~~~~---~g~~p 232 (483)
.|.... ..-.+.+++.||+||-....+. .+ ...+.+ -.+....++.-+|..+.. .|...
T Consensus 234 ---fp~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~iv 310 (367)
T PF12217_consen 234 ---FPNNVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIV 310 (367)
T ss_dssp ----TT---SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS
T ss_pred ---ccccccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccc
Confidence 232222 2223456999999986443111 01 111111 123334666777776652 13333
Q ss_pred CCCeeeE-EEEeCCE-EEEEcCCC
Q 011542 233 SSRCGHT-ITSGGHY-LLLFGGHG 254 (483)
Q Consensus 233 ~~r~~~~-~~~~~~~-i~v~GG~~ 254 (483)
..-.+.. +++-++. -|+|||.+
T Consensus 311 NSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 311 NSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp ---SEEEEEEEETTEEEEEEEEB-
T ss_pred cccccceeEEEECCEEEEEecCcc
Confidence 3333444 4445554 46788864
No 130
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=50.42 E-value=2.8e+02 Score=27.87 Aligned_cols=95 Identities=16% Similarity=0.104 Sum_probs=52.0
Q ss_pred cceEEEEcCCCcE-EeeeecCCCCCCCCCCCCcceeEEEEE---CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCC
Q 011542 46 SDVVVYDIDNKLW-FQPECTGNGSNGQVGPGPRAFHIAVAI---DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFG 121 (483)
Q Consensus 46 ~~~~~yd~~~~~W-~~~~~~~~~~~~~~~p~~R~~h~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~ 121 (483)
+.+.+.|..+.+= ..++ ....-|..... +.++|+.+. + ..+-++|+.+.+= +..
T Consensus 16 ~~v~viD~~t~~~~~~i~------------~~~~~h~~~~~s~Dgr~~yv~~r-d-----g~vsviD~~~~~~--v~~-- 73 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIP------------TGGAPHAGLKFSPDGRYLYVANR-D-----GTVSVIDLATGKV--VAT-- 73 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-------------STTEEEEEE-TT-SSEEEEEET-T-----SEEEEEETTSSSE--EEE--
T ss_pred CEEEEEECCCCeEEEEEc------------CCCCceeEEEecCCCCEEEEEcC-C-----CeEEEEECCcccE--EEE--
Confidence 5788899888653 3333 11122554433 457898853 2 2588999998872 322
Q ss_pred CCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEE
Q 011542 122 DLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQ 167 (483)
Q Consensus 122 ~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~ 167 (483)
.+.+....++++-.|++..+.+.+ ..+.+.++|..|.+=.+
T Consensus 74 -i~~G~~~~~i~~s~DG~~~~v~n~----~~~~v~v~D~~tle~v~ 114 (369)
T PF02239_consen 74 -IKVGGNPRGIAVSPDGKYVYVANY----EPGTVSVIDAETLEPVK 114 (369)
T ss_dssp -EE-SSEEEEEEE--TTTEEEEEEE----ETTEEEEEETTT--EEE
T ss_pred -EecCCCcceEEEcCCCCEEEEEec----CCCceeEecccccccee
Confidence 345555555555555554444443 24568889988866443
No 131
>PLN00181 protein SPA1-RELATED; Provisional
Probab=49.68 E-value=4.2e+02 Score=29.69 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=33.8
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeE-EEeecCCCCCCCCcccEEEEE--CCcEEEEEecCCCCcCCccEEEEECCC
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQW-SELTSFGDLPSPRDFAAASAI--GNRKIVMYGGWDGKKWLSDVYVLDTIS 162 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W-~~l~~~~~~p~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~t 162 (483)
++.+++.||.++ .+.+||+.+..- ..+.. .....++.+ .++.++++|+.++ .+.+||+.+
T Consensus 587 ~~~~L~Sgs~Dg-----~v~iWd~~~~~~~~~~~~-------~~~v~~v~~~~~~g~~latgs~dg-----~I~iwD~~~ 649 (793)
T PLN00181 587 DPTLLASGSDDG-----SVKLWSINQGVSIGTIKT-------KANICCVQFPSESGRSLAFGSADH-----KVYYYDLRN 649 (793)
T ss_pred CCCEEEEEcCCC-----EEEEEECCCCcEEEEEec-------CCCeEEEEEeCCCCCEEEEEeCCC-----eEEEEECCC
Confidence 456777777553 377888876532 22221 111122222 3457788887543 588899875
Q ss_pred C
Q 011542 163 L 163 (483)
Q Consensus 163 ~ 163 (483)
.
T Consensus 650 ~ 650 (793)
T PLN00181 650 P 650 (793)
T ss_pred C
Confidence 4
No 132
>PRK01742 tolB translocation protein TolB; Provisional
Probab=49.35 E-value=3.1e+02 Score=28.06 Aligned_cols=117 Identities=16% Similarity=0.095 Sum_probs=56.6
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCE-EEEEccccCCCCCccEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCH-MFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~-iyv~GG~~~~~~~~~~~~y 107 (483)
.|++.+++....+. ...++++|..+++-..+.... . ........-+++ |++....++. .++|.+
T Consensus 213 PDG~~la~~s~~~~--~~~i~i~dl~tg~~~~l~~~~---------g-~~~~~~wSPDG~~La~~~~~~g~---~~Iy~~ 277 (429)
T PRK01742 213 PDGSKLAYVSFENK--KSQLVVHDLRSGARKVVASFR---------G-HNGAPAFSPDGSRLAFASSKDGV---LNIYVM 277 (429)
T ss_pred CCCCEEEEEEecCC--CcEEEEEeCCCCceEEEecCC---------C-ccCceeECCCCCEEEEEEecCCc---EEEEEE
Confidence 44444455443221 246888998887766654221 0 111122222444 4443322221 358999
Q ss_pred ECCCCeEEEeecCCCCCCCCcccEEEEECCcE-EEEEecCCCCcCCccEEEEECCCCceEEe
Q 011542 108 DTDIWQWSELTSFGDLPSPRDFAAASAIGNRK-IVMYGGWDGKKWLSDVYVLDTISLEWMQL 168 (483)
Q Consensus 108 d~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~t~~W~~i 168 (483)
|+.++...++.. ... .....+...|++ |++.....+ ...+|.+|..+..-+.+
T Consensus 278 d~~~~~~~~lt~---~~~--~~~~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 278 GANGGTPSQLTS---GAG--NNTEPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLV 331 (429)
T ss_pred ECCCCCeEeecc---CCC--CcCCEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEe
Confidence 998888777653 111 112222233444 544433322 23677777766544433
No 133
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=48.71 E-value=24 Score=21.01 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=14.5
Q ss_pred cceeEEEECCcEEEEEcc
Q 011542 21 SGHSAVNIGKSKVVVFGG 38 (483)
Q Consensus 21 ~~h~~~~~~~~~l~v~GG 38 (483)
..|++++..++.||.+|-
T Consensus 8 ~~ht~al~~~g~v~~wG~ 25 (30)
T PF13540_consen 8 GYHTCALTSDGEVYCWGD 25 (30)
T ss_dssp SSEEEEEE-TTEEEEEE-
T ss_pred CCEEEEEEcCCCEEEEcC
Confidence 579999999999999995
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=48.52 E-value=2.6e+02 Score=27.06 Aligned_cols=90 Identities=16% Similarity=0.053 Sum_probs=48.1
Q ss_pred ceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCC
Q 011542 47 DVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSP 126 (483)
Q Consensus 47 ~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~ 126 (483)
.+-+||..+..=..+..... +.....+ ......+|.||++. .+...|+.... . .+..-.+
T Consensus 76 ~vr~~Dln~~~~~~igth~~-------~i~ci~~---~~~~~~vIsgsWD~-----~ik~wD~R~~~---~--~~~~d~~ 135 (323)
T KOG1036|consen 76 QVRRYDLNTGNEDQIGTHDE-------GIRCIEY---SYEVGCVISGSWDK-----TIKFWDPRNKV---V--VGTFDQG 135 (323)
T ss_pred eEEEEEecCCcceeeccCCC-------ceEEEEe---eccCCeEEEcccCc-----cEEEEeccccc---c--ccccccC
Confidence 47788888887666643211 1111111 12345667787764 36677877511 1 1122233
Q ss_pred CcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCC
Q 011542 127 RDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 127 r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
-.-+++.+.++ +.|+|+. -..+.+||+.+.
T Consensus 136 kkVy~~~v~g~--~LvVg~~-----~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 136 KKVYCMDVSGN--RLVVGTS-----DRKVLIYDLRNL 165 (323)
T ss_pred ceEEEEeccCC--EEEEeec-----CceEEEEEcccc
Confidence 35566666654 5566654 234778887654
No 135
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=48.40 E-value=3.6e+02 Score=28.61 Aligned_cols=62 Identities=16% Similarity=0.108 Sum_probs=34.8
Q ss_pred CCCcccEEEEE-CCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe--CCEEEEEccCC
Q 011542 125 SPRDFAAASAI-GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV--EKRLLIYGGRG 197 (483)
Q Consensus 125 ~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~ 197 (483)
.|+.+..++.. .+..||+.| .-++||++|++.++|-..- .... ..--++.+ -+.|+.+||..
T Consensus 132 IP~~GRDm~y~~~scDly~~g------sg~evYRlNLEqGrfL~P~---~~~~--~~lN~v~in~~hgLla~Gt~~ 196 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVG------SGSEVYRLNLEQGRFLNPF---ETDS--GELNVVSINEEHGLLACGTED 196 (703)
T ss_pred cCcCCccccccCCCccEEEee------cCcceEEEEcccccccccc---cccc--ccceeeeecCccceEEecccC
Confidence 34444444442 222566655 3567999999999997542 1111 11122333 35788888854
No 136
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=48.39 E-value=2.7e+02 Score=27.07 Aligned_cols=102 Identities=15% Similarity=0.131 Sum_probs=55.3
Q ss_pred CccEEEEECCCCe----EEEeecCCCCCCCCcccEEEEE---CCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCC
Q 011542 101 LGDFWVLDTDIWQ----WSELTSFGDLPSPRDFAAASAI---GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGS 173 (483)
Q Consensus 101 ~~~~~~yd~~t~~----W~~l~~~~~~p~~r~~~~~~~~---~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~ 173 (483)
.+.++.||+++.+ |++-- .-+..-++-.+-.+ .++++++.-+ ++. ..-.+|..|..++.=+++. .
T Consensus 77 YSHVH~yd~e~~~VrLLWkesi---h~~~~WaGEVSdIlYdP~~D~LLlAR~-DGh-~nLGvy~ldr~~g~~~~L~---~ 148 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKESI---HDKTKWAGEVSDILYDPYEDRLLLARA-DGH-ANLGVYSLDRRTGKAEKLS---S 148 (339)
T ss_pred cceEEEEEcCCCeEEEEEeccc---CCccccccchhheeeCCCcCEEEEEec-CCc-ceeeeEEEcccCCceeecc---C
Confidence 4568999998886 44321 11111111111112 1236766543 222 2345899999999999887 4
Q ss_pred CCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCe
Q 011542 174 VPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGW 222 (483)
Q Consensus 174 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W 222 (483)
-|.+. .+.+++..+|-+ ..... -++.+.+||+.+++|
T Consensus 149 ~ps~K---G~~~~D~a~F~i--~~~~~-------g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 149 NPSLK---GTLVHDYACFGI--NNFHK-------GVSGIHCLDLISGKW 185 (339)
T ss_pred CCCcC---ceEeeeeEEEec--ccccc-------CCceEEEEEccCCeE
Confidence 44332 233333344422 11111 247888999999999
No 137
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=47.44 E-value=84 Score=30.88 Aligned_cols=77 Identities=21% Similarity=0.284 Sum_probs=47.2
Q ss_pred CCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEccCC
Q 011542 232 PSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFD 311 (483)
Q Consensus 232 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~ 311 (483)
..-+.+-++..++++++|-|..+ +.+-.+|+..+.--++-...+ .---++-.+++-+|-||++
T Consensus 357 ~gHkRGIAClQYr~rlvVSGSSD------------ntIRlwdi~~G~cLRvLeGHE-----eLvRciRFd~krIVSGaYD 419 (499)
T KOG0281|consen 357 NGHKRGIACLQYRDRLVVSGSSD------------NTIRLWDIECGACLRVLEGHE-----ELVRCIRFDNKRIVSGAYD 419 (499)
T ss_pred hcccccceehhccCeEEEecCCC------------ceEEEEeccccHHHHHHhchH-----HhhhheeecCceeeecccc
Confidence 34455667778999998877543 568888988775433321111 1113556788889999998
Q ss_pred CCCccCcEEEEcCCCCc
Q 011542 312 GKSTFGDIWWLVPEEDP 328 (483)
Q Consensus 312 ~~~~~~d~w~l~~~~d~ 328 (483)
|.- .+|-|....||
T Consensus 420 Gki---kvWdl~aaldp 433 (499)
T KOG0281|consen 420 GKI---KVWDLQAALDP 433 (499)
T ss_pred ceE---EEEecccccCC
Confidence 852 34544444443
No 138
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=47.31 E-value=23 Score=37.01 Aligned_cols=36 Identities=36% Similarity=0.438 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhhh-CCCCcccccccchhhHHHHHHHHHHH
Q 011542 418 IQATQVLRDHWKK-STPRSIPIKELGPLLRDYQRLIARHL 456 (483)
Q Consensus 418 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (483)
..++|++|+.=++ ..+.+||=| ..|=||||||+..-
T Consensus 51 IKKLQRlRdQIKtW~ss~dIKDK---~~L~d~RrlIE~~M 87 (575)
T KOG2150|consen 51 IKKLQRLRDQIKTWQSSSDIKDK---DSLLDNRRLIEQRM 87 (575)
T ss_pred HHHHHHHHHHHHhhhcccccccH---HHHHHHHHHHHHHH
Confidence 5688999987543 455667666 67779999999754
No 139
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=46.69 E-value=3.1e+02 Score=27.30 Aligned_cols=110 Identities=18% Similarity=0.212 Sum_probs=59.5
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLD 108 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd 108 (483)
.+..+.+.||-++. .++++..++.|-..-+ ...--.-..+...++.+...|++++. +.++.
T Consensus 74 P~~~l~aTGGgDD~-----AflW~~~~ge~~~elt---------gHKDSVt~~~FshdgtlLATGdmsG~-----v~v~~ 134 (399)
T KOG0296|consen 74 PNNNLVATGGGDDL-----AFLWDISTGEFAGELT---------GHKDSVTCCSFSHDGTLLATGDMSGK-----VLVFK 134 (399)
T ss_pred CCCceEEecCCCce-----EEEEEccCCcceeEec---------CCCCceEEEEEccCceEEEecCCCcc-----EEEEE
Confidence 35678888887654 5678888888644321 11111223344557888888988764 44454
Q ss_pred CCC--CeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEe
Q 011542 109 TDI--WQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQL 168 (483)
Q Consensus 109 ~~t--~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i 168 (483)
..+ -+|....+..++-=-+. .....|+++|-.++ .+|+|.+.+..=.++
T Consensus 135 ~stg~~~~~~~~e~~dieWl~W------Hp~a~illAG~~DG-----svWmw~ip~~~~~kv 185 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKW------HPRAHILLAGSTDG-----SVWMWQIPSQALCKV 185 (399)
T ss_pred cccCceEEEeecccCceEEEEe------cccccEEEeecCCC-----cEEEEECCCcceeeE
Confidence 433 34544322111100000 11235777775433 488998887644444
No 140
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=45.27 E-value=2.7e+02 Score=26.27 Aligned_cols=138 Identities=14% Similarity=0.131 Sum_probs=75.5
Q ss_pred cccceEEEEcCCCcEE---eeeecCCCCCCCCCCC---CcceeEEEEECCEEEEEccccCCCCCccEEEEECCC----Ce
Q 011542 44 FLSDVVVYDIDNKLWF---QPECTGNGSNGQVGPG---PRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDI----WQ 113 (483)
Q Consensus 44 ~~~~~~~yd~~~~~W~---~~~~~~~~~~~~~~p~---~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t----~~ 113 (483)
-.+.+..||+.+++=. .++.... ....|- +-...-.++.++-|+++=........=.+-..|+.+ .+
T Consensus 87 ~s~~IvkydL~t~~v~~~~~L~~A~~---~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~t 163 (250)
T PF02191_consen 87 NSRNIVKYDLTTRSVVARRELPGAGY---NNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQT 163 (250)
T ss_pred CCceEEEEECcCCcEEEEEECCcccc---ccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEE
Confidence 3578999999998655 3332111 000111 111233455566677774433322111244556643 35
Q ss_pred EEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe---CCEE
Q 011542 114 WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV---EKRL 190 (483)
Q Consensus 114 W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~---~~~l 190 (483)
|.. ..+......+.++++ .+|++-...... ..-.+.||+.+++=..+.. +.+.+-..++++.. +++|
T Consensus 164 w~T-----~~~k~~~~naFmvCG--vLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i--~f~~~~~~~~~l~YNP~dk~L 233 (250)
T PF02191_consen 164 WNT-----SYPKRSAGNAFMVCG--VLYATDSYDTRD-TEIFYAFDTYTGKEEDVSI--PFPNPYGNISMLSYNPRDKKL 233 (250)
T ss_pred EEe-----ccCchhhcceeeEee--EEEEEEECCCCC-cEEEEEEECCCCceeceee--eeccccCceEeeeECCCCCeE
Confidence 653 145555566655663 799987765443 3345889999887765542 33344445555555 5689
Q ss_pred EEEc
Q 011542 191 LIYG 194 (483)
Q Consensus 191 yv~G 194 (483)
|++-
T Consensus 234 Y~wd 237 (250)
T PF02191_consen 234 YAWD 237 (250)
T ss_pred EEEE
Confidence 9875
No 141
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=44.03 E-value=3.8e+02 Score=27.54 Aligned_cols=213 Identities=15% Similarity=0.106 Sum_probs=0.0
Q ss_pred eeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE---CCEEEEEccccCCC
Q 011542 23 HSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI---DCHMFIFGGRFGSR 99 (483)
Q Consensus 23 h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~---~~~iyv~GG~~~~~ 99 (483)
|+.+..++|..++.|+..++ +|++...++.--.+ ..+.+....+.. ++..++-||.++
T Consensus 85 ~al~s~n~G~~l~ag~i~g~-----lYlWelssG~LL~v------------~~aHYQ~ITcL~fs~dgs~iiTgskDg-- 145 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGN-----LYLWELSSGILLNV------------LSAHYQSITCLKFSDDGSHIITGSKDG-- 145 (476)
T ss_pred eeeecCCCceEEEeecccCc-----EEEEEeccccHHHH------------HHhhccceeEEEEeCCCcEEEecCCCc--
Q ss_pred CCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCC----cCCccEEEEECCCCceEEeccCCCCC
Q 011542 100 RLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK----KWLSDVYVLDTISLEWMQLPVTGSVP 175 (483)
Q Consensus 100 ~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~----~~~~~v~~yd~~t~~W~~i~~~~~~p 175 (483)
.|.++++..-.=..-.-...+-.--..|++.+. | .-.=+||.+.. ..-..+-+||+..+ .-+. ...
T Consensus 146 ---~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsIT-D-l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g--~LLl---ti~ 215 (476)
T KOG0646|consen 146 ---AVLVWLLTDLVSADNDHSVKPLHIFSDHTLSIT-D-LQIGSGGTNARLYTASEDRTIKLWDLSLG--VLLL---TIT 215 (476)
T ss_pred ---cEEEEEEEeecccccCCCccceeeeccCcceeE-E-EEecCCCccceEEEecCCceEEEEEeccc--eeeE---EEe
Q ss_pred CCCcCceEEEeCCEEEEEccCCCCCCcccceeccccccc------ccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEE
Q 011542 176 PPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIE------EENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLL 249 (483)
Q Consensus 176 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~------yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v 249 (483)
.|+.-+++++....-.||-|...+.-+...++.+..... |+.+..+...+. |..-..-...=+...++.+.+
T Consensus 216 fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~--Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 216 FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV--GHENESAITCLAISTDGTLLL 293 (476)
T ss_pred cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeec--cccCCcceeEEEEecCccEEE
Q ss_pred EcCCCCCCCCcccceeeCcEEEEEcCCCc
Q 011542 250 FGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (483)
Q Consensus 250 ~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (483)
.|+.+ +.+-++|+.+.+
T Consensus 294 SGd~d------------g~VcvWdi~S~Q 310 (476)
T KOG0646|consen 294 SGDED------------GKVCVWDIYSKQ 310 (476)
T ss_pred eeCCC------------CCEEEEecchHH
No 142
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=42.49 E-value=3.1e+02 Score=26.14 Aligned_cols=109 Identities=21% Similarity=0.266 Sum_probs=64.1
Q ss_pred eeEEEECCcEEEEEcccCCCccccceEEEEcCCC--cEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCC
Q 011542 23 HSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRR 100 (483)
Q Consensus 23 h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~ 100 (483)
.-.+++++.+-+++-|.- ...+-..|+.++ .|+.+ ...|...++.++|+. .|+|-+++.
T Consensus 14 spLVV~~dskT~v~igSH----s~~~~avd~~sG~~~We~i------------lg~RiE~sa~vvgdf-VV~GCy~g~-- 74 (354)
T KOG4649|consen 14 SPLVVCNDSKTLVVIGSH----SGIVIAVDPQSGNLIWEAI------------LGVRIECSAIVVGDF-VVLGCYSGG-- 74 (354)
T ss_pred CcEEEecCCceEEEEecC----CceEEEecCCCCcEEeehh------------hCceeeeeeEEECCE-EEEEEccCc--
Confidence 345667766666665532 235677888876 58876 356888888889988 566766553
Q ss_pred CccEEEEECCCC--eEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 101 LGDFWVLDTDIW--QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 101 ~~~~~~yd~~t~--~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
+|.++..|+ -|.-... .....-+.+....+.|| .|-.++ .+|.+|+.+..
T Consensus 75 ---lYfl~~~tGs~~w~f~~~-----~~vk~~a~~d~~~glIy-cgshd~-----~~yalD~~~~~ 126 (354)
T KOG4649|consen 75 ---LYFLCVKTGSQIWNFVIL-----ETVKVRAQCDFDGGLIY-CGSHDG-----NFYALDPKTYG 126 (354)
T ss_pred ---EEEEEecchhheeeeeeh-----hhhccceEEcCCCceEE-EecCCC-----cEEEecccccc
Confidence 666776665 4765432 11222233334343444 455443 36777777654
No 143
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=39.16 E-value=4.4e+02 Score=26.94 Aligned_cols=120 Identities=12% Similarity=0.085 Sum_probs=59.1
Q ss_pred ceeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCC
Q 011542 22 GHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRL 101 (483)
Q Consensus 22 ~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~ 101 (483)
.+++++..||-||..|-.+ +.+-+||..+.. .++.. ++..+-.......-|++ |+.=+.+..
T Consensus 350 ~ts~~fHpDgLifgtgt~d-----~~vkiwdlks~~--~~a~F-------pght~~vk~i~FsENGY-~Lat~add~--- 411 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD-----GVVKIWDLKSQT--NVAKF-------PGHTGPVKAISFSENGY-WLATAADDG--- 411 (506)
T ss_pred eEEeeEcCCceEEeccCCC-----ceEEEEEcCCcc--ccccC-------CCCCCceeEEEeccCce-EEEEEecCC---
Confidence 4555556666666655433 347778887766 33322 11111111111122333 333332222
Q ss_pred ccEEEEECCCCe-EEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEec
Q 011542 102 GDFWVLDTDIWQ-WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLP 169 (483)
Q Consensus 102 ~~~~~yd~~t~~-W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~ 169 (483)
.|.++|.+..+ ...++ ++...---+...-..|...+++|. .-.+|.|+-.+..|+++.
T Consensus 412 -~V~lwDLRKl~n~kt~~----l~~~~~v~s~~fD~SGt~L~~~g~-----~l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 412 -SVKLWDLRKLKNFKTIQ----LDEKKEVNSLSFDQSGTYLGIAGS-----DLQVYICKKKTKSWTEIK 470 (506)
T ss_pred -eEEEEEehhhcccceee----ccccccceeEEEcCCCCeEEeecc-----eeEEEEEecccccceeee
Confidence 27788886543 22222 222221122222234567777753 334788888899999997
No 144
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=38.23 E-value=3e+02 Score=29.16 Aligned_cols=126 Identities=14% Similarity=0.110 Sum_probs=65.1
Q ss_pred CCCcceeEEEECCc-EEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEcccc
Q 011542 18 QPRSGHSAVNIGKS-KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRF 96 (483)
Q Consensus 18 ~~R~~h~~~~~~~~-~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~ 96 (483)
-|+.|.-++...-+ -||+.|- .+++++++...+.|-..-... .+-..+..+.--+.|+.+||.+
T Consensus 132 IP~~GRDm~y~~~scDly~~gs------g~evYRlNLEqGrfL~P~~~~---------~~~lN~v~in~~hgLla~Gt~~ 196 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQGRFLNPFETD---------SGELNVVSINEEHGLLACGTED 196 (703)
T ss_pred cCcCCccccccCCCccEEEeec------CcceEEEEccccccccccccc---------cccceeeeecCccceEEecccC
Confidence 35666666653222 2666553 368999999999996532221 1112222222345789999865
Q ss_pred CCCCCccEEEEECCCCeEE-EeecC---CCCCCCCcc--cEEEEECC-cEEEEEecCCCCcCCccEEEEECCCCceEEe
Q 011542 97 GSRRLGDFWVLDTDIWQWS-ELTSF---GDLPSPRDF--AAASAIGN-RKIVMYGGWDGKKWLSDVYVLDTISLEWMQL 168 (483)
Q Consensus 97 ~~~~~~~~~~yd~~t~~W~-~l~~~---~~~p~~r~~--~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i 168 (483)
+ .|+.+|+.+..-. .+... ...|..-.. .++..+.| +--+.+|-. ...+++||+.+.+=..+
T Consensus 197 g-----~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts-----~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 197 G-----VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS-----TGSVLIYDLRASKPLLV 265 (703)
T ss_pred c-----eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc-----CCcEEEEEcccCCceee
Confidence 4 3777888655321 11110 112222222 23333444 433344432 34589999887654443
No 145
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=38.10 E-value=5.5e+02 Score=27.75 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=61.2
Q ss_pred EEEECCcEEEEEecCCCCcCCccEEEEECCCC-ceEEeccCCCCCCCCcCceEEEe---CCEEEEEccCCCCCCccccee
Q 011542 132 ASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL-EWMQLPVTGSVPPPRCGHTATMV---EKRLLIYGGRGGGGPIMGDLW 207 (483)
Q Consensus 132 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~-~W~~i~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~d~~ 207 (483)
++...++.++++|-.. .-.+|.+.+.-+ +=+.+. .+|..+...+.... ++++++.. .+
T Consensus 388 ~aiSPdg~~Ia~st~~----~~~iy~L~~~~~vk~~~v~---~~~~~~~~a~~i~ftid~~k~~~~s-~~---------- 449 (691)
T KOG2048|consen 388 AAISPDGNLIAISTVS----RTKIYRLQPDPNVKVINVD---DVPLALLDASAISFTIDKNKLFLVS-KN---------- 449 (691)
T ss_pred eccCCCCCEEEEeecc----ceEEEEeccCcceeEEEec---cchhhhccceeeEEEecCceEEEEe-cc----------
Confidence 3333455677776321 122344443332 222233 67777755555544 56777765 10
Q ss_pred cccccccccCCCCCeEEeccC-CC-CCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccC
Q 011542 208 ALKGLIEEENETPGWTQLKLP-GQ-APSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPI 284 (483)
Q Consensus 208 ~l~~~~~yd~~~~~W~~~~~~-g~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (483)
...++.++.++.+...+..- .. .-++......-..++.|.++++. ..|++||+++.+-+.+..
T Consensus 450 -~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~-------------g~I~v~nl~~~~~~~l~~ 514 (691)
T KOG2048|consen 450 -IFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR-------------GQIFVYNLETLESHLLKV 514 (691)
T ss_pred -cceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc-------------ceEEEEEcccceeecchh
Confidence 13344455555555544311 01 11112211222367888888754 348999999888777653
No 146
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=37.89 E-value=3.4e+02 Score=25.35 Aligned_cols=218 Identities=15% Similarity=0.160 Sum_probs=99.0
Q ss_pred CCCcceeEEE-ECCcEEEEEccc--CCCcccc-c-eEEEEcC-CCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEE
Q 011542 18 QPRSGHSAVN-IGKSKVVVFGGL--VDKRFLS-D-VVVYDID-NKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFI 91 (483)
Q Consensus 18 ~~R~~h~~~~-~~~~~l~v~GG~--~~~~~~~-~-~~~yd~~-~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv 91 (483)
..+.+..+++ ..+++|++|-.. ....... . .+....+ -.+|.......... ....+.+-....+...++++++
T Consensus 45 ~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~-~~~~~~~~~~~~i~~~~G~l~~ 123 (275)
T PF13088_consen 45 GRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGW-FGNFSGPGRGPPIQLPDGRLIA 123 (275)
T ss_dssp TCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHC-CCSCEECSEEEEEEECTTEEEE
T ss_pred CCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCcccccccc-ccceeccceeeeeEecCCCEEE
Confidence 3444544444 367898888632 1111111 1 1355555 45899876432100 0001111122224444778877
Q ss_pred EccccC-CCCCccEEEEECCC-CeEEEeecCCCCCCCCcccEE-EEECCcEEEEEecCCCCcCCccEEEEECC-CCceEE
Q 011542 92 FGGRFG-SRRLGDFWVLDTDI-WQWSELTSFGDLPSPRDFAAA-SAIGNRKIVMYGGWDGKKWLSDVYVLDTI-SLEWMQ 167 (483)
Q Consensus 92 ~GG~~~-~~~~~~~~~yd~~t-~~W~~l~~~~~~p~~r~~~~~-~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-t~~W~~ 167 (483)
. .+.. ......+..+..+. .+|....... +.......+ +...++.|+++--..... .....+..+ -.+|+.
T Consensus 124 ~-~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~~~~--~~~~~~S~D~G~TWs~ 198 (275)
T PF13088_consen 124 P-YYHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTEGND--DIYISRSTDGGRTWSP 198 (275)
T ss_dssp E-EEEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEECSST--EEEEEEESSTTSS-EE
T ss_pred E-EeeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEccCCC--cEEEEEECCCCCcCCC
Confidence 6 2211 12233345566654 5698887511 121233333 334777888886543111 223334444 357998
Q ss_pred eccCCCCCCCCcCceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEE-EE-eC
Q 011542 168 LPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTI-TS-GG 244 (483)
Q Consensus 168 i~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~-~~-~~ 244 (483)
.... .+|.+.....++.. +++++++........ .+..... .-+..+|.....-...+...+++.. +. -+
T Consensus 199 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~------~l~l~~S-~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~d 270 (275)
T PF13088_consen 199 PQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGRS------NLSLYVS-EDGGKTWSRPKTIDDGPNGDSGYPSLTQLPD 270 (275)
T ss_dssp EEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTSE------EEEEEEE-CTTCEEEEEEEEEEEEE-CCEEEEEEEEEET
T ss_pred ceec-ccCcccCCceEEEcCCCCEEEEEECCCCCC------ceEEEEE-eCCCCcCCccEEEeCCCCCcEECCeeEEeCC
Confidence 6422 34555544444444 568888877322111 1111112 2247889866421122222333333 33 45
Q ss_pred CEEEE
Q 011542 245 HYLLL 249 (483)
Q Consensus 245 ~~i~v 249 (483)
++|+|
T Consensus 271 g~l~i 275 (275)
T PF13088_consen 271 GKLYI 275 (275)
T ss_dssp TEEEE
T ss_pred CcCCC
Confidence 68876
No 147
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=37.55 E-value=3.5e+02 Score=25.35 Aligned_cols=94 Identities=15% Similarity=0.109 Sum_probs=54.9
Q ss_pred cceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECC--EEEEEccccCCCCCccEEEEECCCCeEEEeecCCCC
Q 011542 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC--HMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDL 123 (483)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~--~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~ 123 (483)
..+.++|..+++=...- .+..+ .-.++..+. .+.+-|+++. .+-++|-.++.-+++.. +
T Consensus 81 k~v~vwDV~TGkv~Rr~---------rgH~a--qVNtV~fNeesSVv~SgsfD~-----s~r~wDCRS~s~ePiQi---l 141 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRF---------RGHLA--QVNTVRFNEESSVVASGSFDS-----SVRLWDCRSRSFEPIQI---L 141 (307)
T ss_pred ceEEEEEcccCeeeeec---------ccccc--eeeEEEecCcceEEEeccccc-----eeEEEEcccCCCCccch---h
Confidence 35788999887532210 00111 112333433 5666666543 47788888887777764 5
Q ss_pred CCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 124 PSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 124 p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
-.++..-..+.+.+ ..+|.|-.++ .+..||+..++
T Consensus 142 dea~D~V~Si~v~~-heIvaGS~DG-----tvRtydiR~G~ 176 (307)
T KOG0316|consen 142 DEAKDGVSSIDVAE-HEIVAGSVDG-----TVRTYDIRKGT 176 (307)
T ss_pred hhhcCceeEEEecc-cEEEeeccCC-----cEEEEEeecce
Confidence 56666666666755 6666665444 36678876554
No 148
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=37.41 E-value=2.9e+02 Score=24.68 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=20.1
Q ss_pred eCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccC
Q 011542 243 GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPI 284 (483)
Q Consensus 243 ~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (483)
-.++++++||..+ ...++.+||.. +...+..
T Consensus 110 P~G~~l~~~g~~n---------~~G~l~~wd~~--~~~~i~~ 140 (194)
T PF08662_consen 110 PDGRFLVLAGFGN---------LNGDLEFWDVR--KKKKIST 140 (194)
T ss_pred CCCCEEEEEEccC---------CCcEEEEEECC--CCEEeec
Confidence 4667888888654 23568889987 4444444
No 149
>smart00284 OLF Olfactomedin-like domains.
Probab=33.95 E-value=4.2e+02 Score=25.14 Aligned_cols=157 Identities=11% Similarity=-0.015 Sum_probs=78.8
Q ss_pred CCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCC------------CcccEEEEECCcEE
Q 011542 73 GPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSP------------RDFAAASAIGNRKI 140 (483)
Q Consensus 73 ~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~------------r~~~~~~~~~~~~i 140 (483)
+|.+-.+...++.++.+|.--. ....+.+||..+++-..... +|.+ -...-.++-++| |
T Consensus 70 Lp~~~~GtG~VVYngslYY~~~-----~s~~iiKydL~t~~v~~~~~---Lp~a~y~~~~~Y~~~~~sdiDlAvDE~G-L 140 (255)
T smart00284 70 LPHAGQGTGVVVYNGSLYFNKF-----NSHDICRFDLTTETYQKEPL---LNGAGYNNRFPYAWGGFSDIDLAVDENG-L 140 (255)
T ss_pred CCCccccccEEEECceEEEEec-----CCccEEEEECCCCcEEEEEe---cCccccccccccccCCCccEEEEEcCCc-e
Confidence 4555567777888999988532 23569999999887643321 2322 112223344443 4
Q ss_pred EEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCC
Q 011542 141 VMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETP 220 (483)
Q Consensus 141 yv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~ 220 (483)
+|+=......-.--+-.+|+.|..-++.=.+ ..++...+ -+.++-|.||++-...... -.-.+.||+.+.
T Consensus 141 WvIYat~~~~g~ivvSkLnp~tL~ve~tW~T-~~~k~sa~-naFmvCGvLY~~~s~~~~~--------~~I~yayDt~t~ 210 (255)
T smart00284 141 WVIYATEQNAGKIVISKLNPATLTIENTWIT-TYNKRSAS-NAFMICGILYVTRSLGSKG--------EKVFYAYDTNTG 210 (255)
T ss_pred EEEEeccCCCCCEEEEeeCcccceEEEEEEc-CCCccccc-ccEEEeeEEEEEccCCCCC--------cEEEEEEECCCC
Confidence 4442111111112234567766543333211 23333333 4455578999985322221 133567888876
Q ss_pred CeEEeccCCCCCCCCeeeEEEE---eCCEEEEE
Q 011542 221 GWTQLKLPGQAPSSRCGHTITS---GGHYLLLF 250 (483)
Q Consensus 221 ~W~~~~~~g~~p~~r~~~~~~~---~~~~i~v~ 250 (483)
+=..+.+ +.+.+...+++.- .+.+||+.
T Consensus 211 ~~~~~~i--~f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 211 KEGHLDI--PFENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred ccceeee--eeccccccceeceeCCCCCeEEEE
Confidence 6444332 2333333334443 34578875
No 150
>PTZ00421 coronin; Provisional
Probab=33.80 E-value=5.8e+02 Score=26.79 Aligned_cols=63 Identities=11% Similarity=0.060 Sum_probs=33.5
Q ss_pred EEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCC
Q 011542 32 KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDI 111 (483)
Q Consensus 32 ~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t 111 (483)
.+++.||.++ .+.+||+.+.+-... .. ............-++.+++.|+.++ .+.+||+.+
T Consensus 139 ~iLaSgs~Dg-----tVrIWDl~tg~~~~~--l~-------~h~~~V~sla~spdG~lLatgs~Dg-----~IrIwD~rs 199 (493)
T PTZ00421 139 NVLASAGADM-----VVNVWDVERGKAVEV--IK-------CHSDQITSLEWNLDGSLLCTTSKDK-----KLNIIDPRD 199 (493)
T ss_pred CEEEEEeCCC-----EEEEEECCCCeEEEE--Ec-------CCCCceEEEEEECCCCEEEEecCCC-----EEEEEECCC
Confidence 4666666543 477888877643221 10 0111111122223567777777543 477899987
Q ss_pred Ce
Q 011542 112 WQ 113 (483)
Q Consensus 112 ~~ 113 (483)
++
T Consensus 200 g~ 201 (493)
T PTZ00421 200 GT 201 (493)
T ss_pred Cc
Confidence 65
No 151
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.43 E-value=3.9e+02 Score=24.65 Aligned_cols=58 Identities=14% Similarity=0.056 Sum_probs=38.5
Q ss_pred EEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCC-CCCcCceEEEeCCEEEEEccC
Q 011542 133 SAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVP-PPRCGHTATMVEKRLLIYGGR 196 (483)
Q Consensus 133 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p-~~r~~~~~~~~~~~lyv~GG~ 196 (483)
-.+.+++||.--|.-+ .+.+..+|+.+++=..-. .++ ...++-..+..++++|..--.
T Consensus 51 L~~~~g~i~esTG~yg---~S~ir~~~L~~gq~~~s~---~l~~~~~FgEGit~~gd~~y~LTw~ 109 (262)
T COG3823 51 LEYLDGHILESTGLYG---FSKIRVSDLTTGQEIFSE---KLAPDTVFGEGITKLGDYFYQLTWK 109 (262)
T ss_pred eeeeCCEEEEeccccc---cceeEEEeccCceEEEEe---ecCCccccccceeeccceEEEEEec
Confidence 3444568888777644 467889999866533222 333 455777888889999988643
No 152
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=32.19 E-value=4.4e+02 Score=24.86 Aligned_cols=148 Identities=16% Similarity=0.139 Sum_probs=75.4
Q ss_pred CCCCCCcceeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEEC-CEEEEEc
Q 011542 15 TVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAID-CHMFIFG 93 (483)
Q Consensus 15 ~~p~~R~~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~-~~iyv~G 93 (483)
..|.|-.+...+.-..+.|+..||- .-+++.|.++++-+..-. ...-+-|+.+.-+ +--++-|
T Consensus 111 ~~evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G~i~r~~r----------GHtDYvH~vv~R~~~~qilsG 174 (325)
T KOG0649|consen 111 AVEVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDGRIQREYR----------GHTDYVHSVVGRNANGQILSG 174 (325)
T ss_pred cccCCccceeEeccCCCcEEEecCC------eEEEEEEecCCEEEEEEc----------CCcceeeeeeecccCcceeec
Confidence 3455555555555466789999973 357889999998766431 2234667766633 2233446
Q ss_pred cccCCCCCccEEEEECCCCeEEEe-ecCCCCCCCC--ccc-EEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEec
Q 011542 94 GRFGSRRLGDFWVLDTDIWQWSEL-TSFGDLPSPR--DFA-AASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLP 169 (483)
Q Consensus 94 G~~~~~~~~~~~~yd~~t~~W~~l-~~~~~~p~~r--~~~-~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~ 169 (483)
+.++. +-+.|.+|.+=.+. .+-......| .+- -+|.-.+..-.|.||- ..+-.+++.+.+=+.+-
T Consensus 175 ~EDGt-----vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------p~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 175 AEDGT-----VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------PKLSLWHLRSSESTCVF 243 (325)
T ss_pred CCCcc-----EEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC------CceeEEeccCCCceEEE
Confidence 65542 55677777654433 2211111122 111 1233223345566652 12445566665555443
Q ss_pred cCCCCCCCCcCceEEEeCCEEEEEc
Q 011542 170 VTGSVPPPRCGHTATMVEKRLLIYG 194 (483)
Q Consensus 170 ~~~~~p~~r~~~~~~~~~~~lyv~G 194 (483)
+. |-.-|-+.++++.+.+.|
T Consensus 244 ---pi--pa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 244 ---PI--PARVHLVDFVDDCVLIGG 263 (325)
T ss_pred ---ec--ccceeEeeeecceEEEec
Confidence 22 222334444555555544
No 153
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=30.70 E-value=6.1e+02 Score=26.04 Aligned_cols=92 Identities=17% Similarity=0.245 Sum_probs=51.5
Q ss_pred CccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCC
Q 011542 42 KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFG 121 (483)
Q Consensus 42 ~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~ 121 (483)
....++++++|-.-+.=-+++-. .|..|. +++-.+++.+|+.-=+ ..+-+++.|+..-.=-++ .|
T Consensus 402 de~~N~vYilDe~lnvvGkltGl--------~~gERI-YAvRf~gdv~yiVTfr----qtDPlfviDlsNPenPkv--lG 466 (603)
T COG4880 402 DEPVNAVYILDENLNVVGKLTGL--------APGERI-YAVRFVGDVLYIVTFR----QTDPLFVIDLSNPENPKV--LG 466 (603)
T ss_pred CCccceeEEEcCCCcEEEEEecc--------CCCceE-EEEEEeCceEEEEEEe----ccCceEEEEcCCCCCCce--eE
Confidence 45678999999888776666522 355664 4555678888887432 334578888754321111 11
Q ss_pred CCCCCCcccEEEEECCcEEEEEecCCC
Q 011542 122 DLPSPRDFAAASAIGNRKIVMYGGWDG 148 (483)
Q Consensus 122 ~~p~~r~~~~~~~~~~~~iyv~GG~~~ 148 (483)
.+..|-+.--.--++++.+.=+|-..+
T Consensus 467 eLKIPGfS~YLHpigen~~lGvG~~~g 493 (603)
T COG4880 467 ELKIPGFSEYLHPIGENRLLGVGAYQG 493 (603)
T ss_pred EEecCCchhhccccCCCcEEEeecccC
Confidence 222232222233356667766665543
No 154
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.40 E-value=4.9e+02 Score=24.86 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=44.9
Q ss_pred cceEEceeCCCCCCCCCCCcceeEEEECCcEEEEEcccCCCccccceEEEEcCCC--cEEeeeecCCCCCCCCCCCCcce
Q 011542 2 HYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAF 79 (483)
Q Consensus 2 ~~W~~~~~~~~~g~~p~~R~~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~p~~R~~ 79 (483)
++|++|- +.|.-.++++++| .+|+|=.++ .++..+..++ -|.-.... .-...
T Consensus 45 ~~We~il---------g~RiE~sa~vvgd--fVV~GCy~g-----~lYfl~~~tGs~~w~f~~~~----------~vk~~ 98 (354)
T KOG4649|consen 45 LIWEAIL---------GVRIECSAIVVGD--FVVLGCYSG-----GLYFLCVKTGSQIWNFVILE----------TVKVR 98 (354)
T ss_pred EEeehhh---------CceeeeeeEEECC--EEEEEEccC-----cEEEEEecchhheeeeeehh----------hhccc
Confidence 5677775 5677777788886 355554433 4677777766 47654421 11112
Q ss_pred eEEEEECCEEEEEccccCCCCCccEEEEECCCCe
Q 011542 80 HIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQ 113 (483)
Q Consensus 80 h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 113 (483)
..+...++-||+ |--+ ..++.+|+.+..
T Consensus 99 a~~d~~~glIyc-gshd-----~~~yalD~~~~~ 126 (354)
T KOG4649|consen 99 AQCDFDGGLIYC-GSHD-----GNFYALDPKTYG 126 (354)
T ss_pred eEEcCCCceEEE-ecCC-----CcEEEecccccc
Confidence 233333445554 4332 247888887753
No 155
>PTZ00420 coronin; Provisional
Probab=28.71 E-value=7.6e+02 Score=26.53 Aligned_cols=61 Identities=8% Similarity=0.026 Sum_probs=33.8
Q ss_pred EEEEEccccCCCCCccEEEEECCCCeE-EEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 88 HMFIFGGRFGSRRLGDFWVLDTDIWQW-SELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 88 ~iyv~GG~~~~~~~~~~~~yd~~t~~W-~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
.+++.||.++ .+.++|+.+.+= ..+. .+ ..-.++....++.+++.++.+ ..+.+||+.+.+
T Consensus 139 ~iLaSgS~Dg-----tIrIWDl~tg~~~~~i~----~~--~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~ 200 (568)
T PTZ00420 139 YIMCSSGFDS-----FVNIWDIENEKRAFQIN----MP--KKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQE 200 (568)
T ss_pred eEEEEEeCCC-----eEEEEECCCCcEEEEEe----cC--CcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCc
Confidence 4556666543 477888877641 1111 11 112233333456777777643 348889998764
No 156
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=28.38 E-value=6.7e+02 Score=25.78 Aligned_cols=106 Identities=15% Similarity=0.053 Sum_probs=57.2
Q ss_pred ccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCC
Q 011542 45 LSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDL 123 (483)
Q Consensus 45 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~ 123 (483)
..++|++|..++.=..+.. ......+....- |.+|+..-.+.+ ..+++++|++..+=.++...+.
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~----------~~gi~~~Ps~spdG~~ivf~Sdr~G---~p~I~~~~~~g~~~~riT~~~~- 326 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTN----------GFGINTSPSWSPDGSKIVFTSDRGG---RPQIYLYDLEGSQVTRLTFSGG- 326 (425)
T ss_pred CccEEEEcCCCCcceeccc----------CCccccCccCCCCCCEEEEEeCCCC---CcceEEECCCCCceeEeeccCC-
Confidence 4689999999887333331 112222333333 444444432222 2379999999888777764221
Q ss_pred CCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc-eEEecc
Q 011542 124 PSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE-WMQLPV 170 (483)
Q Consensus 124 p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~-W~~i~~ 170 (483)
...+.... .+++.++|=+..... .++..+|+.++. |+.+..
T Consensus 327 ---~~~~p~~S-pdG~~i~~~~~~~g~--~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 327 ---GNSNPVWS-PDGDKIVFESSSGGQ--WDIDKNDLASGGKIRILTS 368 (425)
T ss_pred ---CCcCccCC-CCCCEEEEEeccCCc--eeeEEeccCCCCcEEEccc
Confidence 11122222 233444444333222 668889988777 887763
No 157
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=28.18 E-value=3.9e+02 Score=23.01 Aligned_cols=82 Identities=12% Similarity=0.118 Sum_probs=47.3
Q ss_pred EEECCEEEEEccccCCCCCccEEEEECCCCeE-EEeecCCCCCCCCc----ccEEEEECCcEEEEEecCCCCcCCccEEE
Q 011542 83 VAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQW-SELTSFGDLPSPRD----FAAASAIGNRKIVMYGGWDGKKWLSDVYV 157 (483)
Q Consensus 83 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W-~~l~~~~~~p~~r~----~~~~~~~~~~~iyv~GG~~~~~~~~~v~~ 157 (483)
+.++|.+|=++.........-+..||..+.+. ..++ +|.... ...+.++.++++-++--. .....-++|+
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~----lP~~~~~~~~~~~L~~v~~~~L~~~~~~-~~~~~~~IWv 76 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLP----LPFCNDDDDDSVSLSVVRGDCLCVLYQC-DETSKIEIWV 76 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEEC----CCCccCccCCEEEEEEecCCEEEEEEec-cCCccEEEEE
Confidence 46678777776554433222588999999998 5555 343332 223323434467766321 1222356777
Q ss_pred EE---CCCCceEEec
Q 011542 158 LD---TISLEWMQLP 169 (483)
Q Consensus 158 yd---~~t~~W~~i~ 169 (483)
.+ .....|+++-
T Consensus 77 m~~~~~~~~SWtK~~ 91 (164)
T PF07734_consen 77 MKKYGYGKESWTKLF 91 (164)
T ss_pred EeeeccCcceEEEEE
Confidence 66 2377899875
No 158
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=27.34 E-value=5.3e+02 Score=24.32 Aligned_cols=65 Identities=14% Similarity=0.046 Sum_probs=36.4
Q ss_pred CeEEEeec--CCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe
Q 011542 112 WQWSELTS--FGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV 186 (483)
Q Consensus 112 ~~W~~l~~--~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~ 186 (483)
..|....| .+..+.|-.+.-...-..+.|+..||- .-+|..|+++++.++.- ....-+-|+++.-
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G~i~r~~----rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDGRIQREY----RGHTDYVHSVVGR 165 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecCC------eEEEEEEecCCEEEEEE----cCCcceeeeeeec
Confidence 34665544 122344444322222244588888873 34788999999888753 2233455666654
No 159
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=27.10 E-value=7.7e+02 Score=26.11 Aligned_cols=173 Identities=17% Similarity=0.124 Sum_probs=89.2
Q ss_pred EEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCc----------ccceec
Q 011542 139 KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPI----------MGDLWA 208 (483)
Q Consensus 139 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~----------~~d~~~ 208 (483)
.+|+-++.....+ ..+-.+|+.+.+=.... .. .. .+..+-+..+.|||..-....... ......
T Consensus 173 ~~y~p~~~~~~~~-~~i~s~dl~~~~~~~~~---~~-~g-~~~~vY~S~~~LYia~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (521)
T PF09826_consen 173 IIYFPGGPSGSNY-TTITSIDLDPDKASDST---SV-LG-SGGNVYMSENNLYIASNRYYYEPYAMMRFEASAEPEESNE 246 (521)
T ss_pred eEEecCCCCCCcE-EEEEEEeCCCCCcccee---EE-Ee-cCCEEEEeCCcEEEEEecccccccccchhccccccccCCC
Confidence 5666554444433 36677777444322111 00 01 222333336788888654332100 000112
Q ss_pred ccccccccCCCCCeEEec---cCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCC
Q 011542 209 LKGLIEEENETPGWTQLK---LPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIG 285 (483)
Q Consensus 209 l~~~~~yd~~~~~W~~~~---~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~ 285 (483)
-..++.|+++....+-.. ++|.+ ...+++-.+++.+-|+-..... +........|.++++|..-+.--.+...
T Consensus 247 ~T~I~kf~~~~~~~~y~~sg~V~G~l---lnqFsmdE~~G~LRvaTT~~~~-~~~~~~~s~N~lyVLD~~L~~vG~l~~l 322 (521)
T PF09826_consen 247 STTIYKFALDGGKIEYVGSGSVPGYL---LNQFSMDEYDGYLRVATTSGNW-WWDSEDTSSNNLYVLDEDLKIVGSLEGL 322 (521)
T ss_pred ceEEEEEEccCCcEEEEEEEEECcEE---cccccEeccCCEEEEEEecCcc-cccCCCCceEEEEEECCCCcEeEEcccc
Confidence 245666677766665332 22222 3345555677877776543221 0011134678999999655555666654
Q ss_pred CCCCCCCcceEEEEECCEEEEEccCCCCCccCcEEEEcCCCCc
Q 011542 286 NEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDP 328 (483)
Q Consensus 286 ~~~p~~R~~~~~~~~~~~i~v~GG~~~~~~~~d~w~l~~~~d~ 328 (483)
.|..|. +++=.++++.|++- ....+-++.+++..+.
T Consensus 323 --a~gE~I-ysvRF~Gd~~Y~VT----FrqvDPLfviDLsdP~ 358 (521)
T PF09826_consen 323 --APGERI-YSVRFMGDRAYLVT----FRQVDPLFVIDLSDPA 358 (521)
T ss_pred --CCCceE-EEEEEeCCeEEEEE----EeecCceEEEECCCCC
Confidence 344444 56667899999874 2345667777766443
No 160
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=25.55 E-value=6.7e+02 Score=24.85 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=58.0
Q ss_pred CcEEEEEcccCCCccccceEEEEcCCC--cEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEE
Q 011542 30 KSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 30 ~~~l~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~y 107 (483)
+|+||+-.. ++ .+++||..++ .|..-.. .. ++..-.+++.++.+|+.- ..+.++++
T Consensus 111 ~G~i~~g~~-~g-----~~y~ld~~~G~~~W~~~~~---------~~-~~~~~~~v~~~~~v~~~s------~~g~~~al 168 (370)
T COG1520 111 DGKIYVGSW-DG-----KLYALDASTGTLVWSRNVG---------GS-PYYASPPVVGDGTVYVGT------DDGHLYAL 168 (370)
T ss_pred CCeEEEecc-cc-----eEEEEECCCCcEEEEEecC---------CC-eEEecCcEEcCcEEEEec------CCCeEEEE
Confidence 566555433 22 7899999644 6877531 11 444444455566666653 22358888
Q ss_pred ECCCC--eEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCC--ceEE
Q 011542 108 DTDIW--QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL--EWMQ 167 (483)
Q Consensus 108 d~~t~--~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~ 167 (483)
|..+. .|..-.+.+ ...+.....+ +.++.+|+- ... ....++.+|+.++ .|..
T Consensus 169 ~~~tG~~~W~~~~~~~--~~~~~~~~~~-~~~~~vy~~-~~~---~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 169 NADTGTLKWTYETPAP--LSLSIYGSPA-IASGTVYVG-SDG---YDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred EccCCcEEEEEecCCc--cccccccCce-eecceEEEe-cCC---CcceEEEEEccCCcEeeee
Confidence 88755 577543211 1222222222 445466654 322 1225888998755 5875
No 161
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=24.71 E-value=1.2e+03 Score=27.37 Aligned_cols=217 Identities=12% Similarity=-0.020 Sum_probs=0.0
Q ss_pred eeEEEE-CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCC------CcceeEEEEE--CCEEEEEc
Q 011542 23 HSAVNI-GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPG------PRAFHIAVAI--DCHMFIFG 93 (483)
Q Consensus 23 h~~~~~-~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~------~R~~h~~~~~--~~~iyv~G 93 (483)
+.+++. .++.|||.-..+ +.+.++|+.++.=+.+...+.......... -..-+.+++. ++.||+..
T Consensus 627 ~GIavd~~gn~LYVaDt~n-----~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTEN-----HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCC-----ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Q ss_pred cccCCCCCccEEEEECCCCeEEEeecCCCCC----------CCCcccEEEEECCcE-EEEEecCCCCcCCccEEEEECCC
Q 011542 94 GRFGSRRLGDFWVLDTDIWQWSELTSFGDLP----------SPRDFAAASAIGNRK-IVMYGGWDGKKWLSDVYVLDTIS 162 (483)
Q Consensus 94 G~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p----------~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~t 162 (483)
..+.. +++||+.++....+...+... ....-..+++..++. |||.-.. .+.+.+||+.+
T Consensus 702 ~~~~~-----I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----n~~Irv~D~~t 771 (1057)
T PLN02919 702 AGQHQ-----IWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----SSSIRALDLKT 771 (1057)
T ss_pred CCCCe-----EEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-----CCeEEEEECCC
Q ss_pred CceEEec---------------cCCCCCCCCcCceEEEe---CCEEEEEccCCCCCCcccceecccccccccCCCCCeEE
Q 011542 163 LEWMQLP---------------VTGSVPPPRCGHTATMV---EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQ 224 (483)
Q Consensus 163 ~~W~~i~---------------~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~ 224 (483)
+....+. ..+........+-..+. ++.+||.-..+ +.+.+||+++.....
T Consensus 772 g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N------------~rIrviD~~tg~v~t 839 (1057)
T PLN02919 772 GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN------------HKIKKLDPATKRVTT 839 (1057)
T ss_pred CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC------------CEEEEEECCCCeEEE
Q ss_pred eccCCCCCCC----------CeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCc
Q 011542 225 LKLPGQAPSS----------RCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (483)
Q Consensus 225 ~~~~g~~p~~----------r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (483)
+...|..-.. +-..-++.-++++||.-..+ +.|.++|+.+.+
T Consensus 840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N------------n~Irvid~~~~~ 891 (1057)
T PLN02919 840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN------------SLIRYLDLNKGE 891 (1057)
T ss_pred EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC------------CEEEEEECCCCc
No 162
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=24.00 E-value=1.9e+02 Score=18.05 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=14.3
Q ss_pred EECCcEEEEEcccCCCccccceEEEEcCC
Q 011542 27 NIGKSKVVVFGGLVDKRFLSDVVVYDIDN 55 (483)
Q Consensus 27 ~~~~~~l~v~GG~~~~~~~~~~~~yd~~~ 55 (483)
.+.++.||+.+. -..++++|+++
T Consensus 18 ~v~~g~vyv~~~------dg~l~ald~~t 40 (40)
T PF13570_consen 18 AVAGGRVYVGTG------DGNLYALDAAT 40 (40)
T ss_dssp EECTSEEEEE-T------TSEEEEEETT-
T ss_pred EEECCEEEEEcC------CCEEEEEeCCC
Confidence 444578887765 24688888764
No 163
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=23.63 E-value=3.1e+02 Score=29.52 Aligned_cols=76 Identities=20% Similarity=0.275 Sum_probs=39.6
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcce-eEEEEE-CCEEEEEccccCCCCCccEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAF-HIAVAI-DCHMFIFGGRFGSRRLGDFW 105 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~-h~~~~~-~~~iyv~GG~~~~~~~~~~~ 105 (483)
..++-+++-||++.. +.++|..+..=+.+......+...-+..++.. ++.+.- .+.+++-||... ++-
T Consensus 127 ak~~~lvaSgGLD~~-----IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek-----~lr 196 (735)
T KOG0308|consen 127 AKNNELVASGGLDRK-----IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK-----DLR 196 (735)
T ss_pred ccCceeEEecCCCcc-----EEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc-----ceE
Confidence 356678999998653 66777765533222222221111111123322 222222 235788777543 577
Q ss_pred EEECCCCe
Q 011542 106 VLDTDIWQ 113 (483)
Q Consensus 106 ~yd~~t~~ 113 (483)
.||+.+++
T Consensus 197 ~wDprt~~ 204 (735)
T KOG0308|consen 197 LWDPRTCK 204 (735)
T ss_pred Eecccccc
Confidence 88887764
No 164
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=23.37 E-value=6.5e+02 Score=24.88 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=13.2
Q ss_pred cEEEEEcccCCCccccceEEEEcC
Q 011542 31 SKVVVFGGLVDKRFLSDVVVYDID 54 (483)
Q Consensus 31 ~~l~v~GG~~~~~~~~~~~~yd~~ 54 (483)
.+.+++||+..++ +.++.+|+.
T Consensus 95 wktilvggmg~GG--~~~yALDVT 116 (335)
T PF05567_consen 95 WKTILVGGMGRGG--RGYYALDVT 116 (335)
T ss_dssp EEEEEEEE-TTS---SEEEEEE-S
T ss_pred ceEEEEeCCCCCc--ceEEEEecc
Confidence 5689999986443 346777766
No 165
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=23.19 E-value=4.4e+02 Score=24.74 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=35.8
Q ss_pred CcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEccCCCCCc
Q 011542 267 NDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKST 315 (483)
Q Consensus 267 ~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~~~~ 315 (483)
.++-.+|..+...+.+..... .+.+-..+.+.++.+|.|-.+|..+
T Consensus 123 ~s~r~wDCRS~s~ePiQilde---a~D~V~Si~v~~heIvaGS~DGtvR 168 (307)
T KOG0316|consen 123 SSVRLWDCRSRSFEPIQILDE---AKDGVSSIDVAEHEIVAGSVDGTVR 168 (307)
T ss_pred ceeEEEEcccCCCCccchhhh---hcCceeEEEecccEEEeeccCCcEE
Confidence 457888988888888877544 7788888888888888887777643
No 166
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=23.09 E-value=7.6e+02 Score=24.65 Aligned_cols=148 Identities=8% Similarity=-0.002 Sum_probs=0.0
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEec----CCCCcCCccEEEEECC
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGG----WDGKKWLSDVYVLDTI 161 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG----~~~~~~~~~v~~yd~~ 161 (483)
..++|+.-....... +.+.++|..+ ++.+.. .+.+..-+.+..-+.+.+|+.-. .......+.+.+||+.
T Consensus 12 ~~~v~V~d~~~~~~~-~~v~ViD~~~--~~v~g~---i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 12 ARRVYVLDPGHFAAT-TQVYTIDGEA--GRVLGM---TDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred CCEEEEECCcccccC-ceEEEEECCC--CEEEEE---EEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECc
Q ss_pred CCceEEeccCCCCCC---CCcCceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCee
Q 011542 162 SLEWMQLPVTGSVPP---PRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCG 237 (483)
Q Consensus 162 t~~W~~i~~~~~~p~---~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~ 237 (483)
|.+=..--+.++-|. .-.....++. +++...+...+.. +.+-+.|+.+++-...- +.|.....
T Consensus 86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~----------~~V~VvD~~~~kvv~ei---~vp~~~~v 152 (352)
T TIGR02658 86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPS----------PAVGVVDLEGKAFVRMM---DVPDCYHI 152 (352)
T ss_pred cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCC----------CEEEEEECCCCcEEEEE---eCCCCcEE
Q ss_pred eEEEEeCCEEEEEcC
Q 011542 238 HTITSGGHYLLLFGG 252 (483)
Q Consensus 238 ~~~~~~~~~i~v~GG 252 (483)
+...-....+.+.-|
T Consensus 153 y~t~e~~~~~~~~Dg 167 (352)
T TIGR02658 153 FPTANDTFFMHCRDG 167 (352)
T ss_pred EEecCCccEEEeecC
No 167
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.17 E-value=6.8e+02 Score=23.69 Aligned_cols=126 Identities=16% Similarity=0.211 Sum_probs=62.2
Q ss_pred CCCCCcceeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecC---CC-CC---CCCCCCCcceeEEEEECCE
Q 011542 16 VPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTG---NG-SN---GQVGPGPRAFHIAVAIDCH 88 (483)
Q Consensus 16 ~p~~R~~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~---~~-~~---~~~~p~~R~~h~~~~~~~~ 88 (483)
.|++-..|..+.- -+=++-||+++. -.+|.|| +++|..-.... +. .| .|....+++.-+.+.-+++
T Consensus 162 ~~g~~~~~~~~~~--~krlvSgGcDn~---VkiW~~~--~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~ 234 (299)
T KOG1332|consen 162 APGSLVDQGPAAK--VKRLVSGGCDNL---VKIWKFD--SDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT 234 (299)
T ss_pred CCccccccCcccc--cceeeccCCccc---eeeeecC--CcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc
Confidence 3444444444321 245788998653 2455555 44675432110 00 00 1223355666666666666
Q ss_pred EEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECC-CCceEE
Q 011542 89 MFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI-SLEWMQ 167 (483)
Q Consensus 89 iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-t~~W~~ 167 (483)
++++ .-+.+...|+.... .+.|.+.+..+-...++ .+-|-|| .|.+.++-.. .++|.+
T Consensus 235 viIw-------------t~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn-~LaVs~G------dNkvtlwke~~~Gkw~~ 293 (299)
T KOG1332|consen 235 VIIW-------------TKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGN-ILAVSGG------DNKVTLWKENVDGKWEE 293 (299)
T ss_pred EEEE-------------EecCccCccccccc-ccCCcceEEEEEecccc-EEEEecC------CcEEEEEEeCCCCcEEE
Confidence 6665 23345566754321 12555555433333333 4555554 3445566554 458998
Q ss_pred ec
Q 011542 168 LP 169 (483)
Q Consensus 168 i~ 169 (483)
+.
T Consensus 294 v~ 295 (299)
T KOG1332|consen 294 VG 295 (299)
T ss_pred cc
Confidence 75
No 168
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=21.71 E-value=4.6e+02 Score=26.00 Aligned_cols=40 Identities=10% Similarity=0.064 Sum_probs=25.9
Q ss_pred cEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEccCCC
Q 011542 268 DTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDG 312 (483)
Q Consensus 268 ~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~ 312 (483)
.+-++++.+....+.-.. .+.+-+|....++++|-|..+.
T Consensus 341 TikvW~~st~efvRtl~g-----HkRGIAClQYr~rlvVSGSSDn 380 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTLNG-----HKRGIACLQYRDRLVVSGSSDN 380 (499)
T ss_pred eEEEEeccceeeehhhhc-----ccccceehhccCeEEEecCCCc
Confidence 466677777665543221 4456677778899888887653
No 169
>COG1343 CRISPR-associated protein Cas2 [Defense mechanisms]
Probab=21.07 E-value=2.8e+02 Score=21.60 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhhhhCCCCcccccccchhhHHHHHHHHHHHhcccccCCCCCCceeEEEEEecCCC
Q 011542 417 RIQATQVLRDHWKKSTPRSIPIKELGPLLRDYQRLIARHLANLQSTELGLPGKEAYTFYHLKNSS 481 (483)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (483)
+-.++..+-.++-..-|.+.-+.||.+ .|+++|..+.-+-.. ++....++|.+.+..
T Consensus 15 R~~~~~~l~~~~l~rVQnSvFeg~l~~--~~~~~l~~~~~kii~------~~~Dsi~iy~~~~~~ 71 (89)
T COG1343 15 RVRKVAKLLKRGLQRVQNSVFEGELTP--ADLEKLKRRLKKIID------EDEDSIRIYPLRRRA 71 (89)
T ss_pred HHHHHHHHHHhhhhhheeeeeEEecCH--HHHHHHHHHHHhhhc------cccceEEEEEccchh
Confidence 344555566677788999999999999 899999988875443 567788888877653
No 170
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=20.28 E-value=9e+02 Score=24.39 Aligned_cols=40 Identities=18% Similarity=0.334 Sum_probs=25.7
Q ss_pred EEEECCEEEEEccccCCC------------CCc--cEEEEECCCCeEEEeecCC
Q 011542 82 AVAIDCHMFIFGGRFGSR------------RLG--DFWVLDTDIWQWSELTSFG 121 (483)
Q Consensus 82 ~~~~~~~iyv~GG~~~~~------------~~~--~~~~yd~~t~~W~~l~~~~ 121 (483)
.|...+.++++..+.... ... .|+..|.+..+|.++...+
T Consensus 252 LVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 252 FVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 455677899998753211 112 2455688889999998643
Done!