Query 011542
Match_columns 483
No_of_seqs 319 out of 2553
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 10:17:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011542.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011542hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zgk_A Kelch-like ECH-associat 100.0 3.6E-47 1.2E-51 372.5 31.5 290 14-345 9-302 (308)
2 2xn4_A Kelch-like protein 2; s 100.0 6.3E-45 2.2E-49 355.3 35.9 275 30-343 15-290 (302)
3 3ii7_A Kelch-like protein 7; p 100.0 6.9E-45 2.4E-49 355.7 33.1 275 31-345 12-287 (306)
4 2vpj_A Kelch-like protein 12; 100.0 1.3E-44 4.4E-49 352.8 31.7 274 30-343 14-291 (301)
5 2xn4_A Kelch-like protein 2; s 100.0 2.7E-43 9.2E-48 343.7 33.5 260 3-304 41-302 (302)
6 1zgk_A Kelch-like ECH-associat 100.0 8.9E-43 3E-47 341.3 32.3 256 2-300 49-308 (308)
7 3ii7_A Kelch-like protein 7; p 100.0 1.5E-42 5.2E-47 339.0 31.5 256 2-301 34-294 (306)
8 2vpj_A Kelch-like protein 12; 100.0 3.6E-42 1.2E-46 335.5 32.5 257 2-301 41-300 (301)
9 2uvk_A YJHT; unknown function, 100.0 2.2E-42 7.6E-47 345.4 28.4 287 15-336 5-348 (357)
10 4asc_A Kelch repeat and BTB do 100.0 1.2E-42 4E-47 341.5 25.1 270 3-309 24-305 (315)
11 4asc_A Kelch repeat and BTB do 100.0 1.3E-41 4.3E-46 334.1 29.0 261 31-336 5-283 (315)
12 2woz_A Kelch repeat and BTB do 100.0 8.2E-42 2.8E-46 335.9 26.0 270 3-309 35-315 (318)
13 2woz_A Kelch repeat and BTB do 100.0 6.9E-41 2.4E-45 329.3 31.3 271 17-336 6-293 (318)
14 2zwa_A Leucine carboxyl methyl 100.0 1.1E-38 3.8E-43 344.8 28.1 285 15-324 384-692 (695)
15 2uvk_A YJHT; unknown function, 100.0 1.5E-36 5.2E-41 303.0 25.3 253 2-285 43-351 (357)
16 2zwa_A Leucine carboxyl methyl 100.0 6E-34 2E-38 307.9 27.0 238 73-336 385-641 (695)
17 1k3i_A Galactose oxidase precu 100.0 4.5E-32 1.6E-36 292.3 28.3 277 3-311 177-531 (656)
18 1k3i_A Galactose oxidase precu 100.0 8.1E-29 2.8E-33 266.9 20.7 263 48-346 168-513 (656)
19 3mbr_X Glutamine cyclotransfer 97.7 0.011 3.7E-07 54.3 23.0 190 77-309 21-223 (243)
20 3dsm_A Uncharacterized protein 97.6 0.042 1.4E-06 52.7 26.8 231 45-325 16-252 (328)
21 3dsm_A Uncharacterized protein 97.6 0.014 4.7E-07 56.2 23.2 207 23-277 87-303 (328)
22 3nol_A Glutamine cyclotransfer 97.4 0.033 1.1E-06 51.6 21.6 188 79-309 45-244 (262)
23 3v9f_A Two-component system se 97.4 0.012 3.9E-07 64.0 21.1 227 29-312 416-648 (781)
24 3mbr_X Glutamine cyclotransfer 97.3 0.058 2E-06 49.4 21.4 187 23-252 24-223 (243)
25 3q7m_A Lipoprotein YFGL, BAMB; 97.3 0.15 5.2E-06 49.5 28.4 209 26-308 99-325 (376)
26 4ery_A WD repeat-containing pr 97.1 0.17 5.9E-06 47.4 24.3 225 28-313 32-260 (312)
27 4a2l_A BT_4663, two-component 97.1 0.041 1.4E-06 59.8 21.3 231 24-312 410-651 (795)
28 3nol_A Glutamine cyclotransfer 97.0 0.056 1.9E-06 50.1 18.6 182 28-252 50-244 (262)
29 4aez_A CDC20, WD repeat-contai 97.0 0.1 3.5E-06 51.2 22.2 222 29-312 144-371 (401)
30 2iwa_A Glutamine cyclotransfer 97.0 0.24 8.2E-06 46.1 22.5 200 23-276 24-237 (266)
31 3nok_A Glutaminyl cyclase; bet 96.9 0.059 2E-06 50.0 18.0 157 79-281 57-215 (268)
32 1k8k_C P40, ARP2/3 complex 41 96.9 0.27 9.1E-06 47.0 23.3 115 25-164 14-129 (372)
33 1l0q_A Surface layer protein; 96.8 0.14 4.7E-06 49.7 20.5 186 31-281 2-194 (391)
34 1gxr_A ESG1, transducin-like e 96.7 0.27 9.1E-06 46.1 21.8 219 28-312 106-328 (337)
35 1rwi_B Serine/threonine-protei 96.7 0.25 8.6E-06 45.0 21.0 221 23-309 27-252 (270)
36 2hqs_A Protein TOLB; TOLB, PAL 96.7 0.09 3.1E-06 52.2 19.0 204 29-284 188-395 (415)
37 1q7f_A NHL, brain tumor CG1071 96.6 0.42 1.4E-05 44.1 25.2 231 23-308 33-268 (286)
38 2xbg_A YCF48-like protein; pho 96.6 0.56 1.9E-05 44.8 23.6 219 28-309 87-311 (327)
39 3nok_A Glutaminyl cyclase; bet 96.6 0.26 8.9E-06 45.6 19.2 150 29-224 63-215 (268)
40 3jrp_A Fusion protein of prote 96.6 0.17 5.9E-06 48.4 19.4 109 29-163 21-135 (379)
41 2hqs_A Protein TOLB; TOLB, PAL 96.6 0.27 9.1E-06 48.8 21.1 223 46-324 159-385 (415)
42 2iwa_A Glutamine cyclotransfer 96.5 0.51 1.8E-05 43.8 23.2 190 80-312 24-228 (266)
43 2ojh_A Uncharacterized protein 96.5 0.21 7E-06 45.7 18.9 190 44-284 20-214 (297)
44 3bws_A Protein LP49; two-domai 96.4 0.6 2E-05 45.8 22.9 207 24-280 127-338 (433)
45 2xbg_A YCF48-like protein; pho 96.3 0.78 2.7E-05 43.8 22.9 240 2-309 25-268 (327)
46 3ow8_A WD repeat-containing pr 96.3 0.76 2.6E-05 43.5 22.9 219 30-313 91-313 (321)
47 1l0q_A Surface layer protein; 96.3 0.22 7.4E-06 48.3 18.5 193 24-279 36-236 (391)
48 3v9f_A Two-component system se 96.3 0.19 6.6E-06 54.3 19.7 225 27-308 370-600 (781)
49 4a2l_A BT_4663, two-component 96.3 0.3 1E-05 52.9 21.0 228 27-308 364-603 (795)
50 3zwl_B Eukaryotic translation 96.2 0.73 2.5E-05 43.6 21.6 110 29-163 42-152 (369)
51 2z2n_A Virginiamycin B lyase; 96.2 0.72 2.5E-05 42.3 24.7 220 23-308 18-242 (299)
52 3q7m_A Lipoprotein YFGL, BAMB; 96.2 0.99 3.4E-05 43.5 30.2 217 28-309 51-285 (376)
53 3bws_A Protein LP49; two-domai 96.2 0.39 1.3E-05 47.2 19.7 205 29-281 179-395 (433)
54 1p22_A F-BOX/WD-repeat protein 96.2 1.2 4E-05 44.0 23.9 216 29-313 141-357 (435)
55 4ery_A WD repeat-containing pr 96.1 0.87 3E-05 42.4 24.9 194 29-278 75-270 (312)
56 3ott_A Two-component system se 96.1 0.49 1.7E-05 50.9 21.6 226 28-312 381-618 (758)
57 2z2n_A Virginiamycin B lyase; 96.1 0.86 2.9E-05 41.8 25.3 220 24-308 61-283 (299)
58 1gxr_A ESG1, transducin-like e 96.0 0.5 1.7E-05 44.2 19.1 222 28-312 60-287 (337)
59 2xdw_A Prolyl endopeptidase; a 96.0 0.34 1.2E-05 51.7 19.7 219 27-283 132-376 (710)
60 3ow8_A WD repeat-containing pr 96.0 0.88 3E-05 43.0 20.6 177 86-313 91-271 (321)
61 4gga_A P55CDC, cell division c 95.9 0.68 2.3E-05 45.6 20.2 106 29-163 157-262 (420)
62 3jro_A Fusion protein of prote 95.9 0.14 4.8E-06 55.2 16.2 109 29-163 19-133 (753)
63 1r5m_A SIR4-interacting protei 95.9 1.3 4.6E-05 42.7 22.0 111 28-165 117-239 (425)
64 3vgz_A Uncharacterized protein 95.8 1.3 4.6E-05 41.6 25.5 209 25-281 46-267 (353)
65 2ojh_A Uncharacterized protein 95.6 0.32 1.1E-05 44.3 15.5 213 26-283 48-265 (297)
66 3vgz_A Uncharacterized protein 95.6 1.6 5.3E-05 41.2 27.8 210 24-281 93-308 (353)
67 3azo_A Aminopeptidase; POP fam 95.6 0.61 2.1E-05 48.9 19.3 214 28-283 138-376 (662)
68 1nir_A Nitrite reductase; hemo 95.6 0.6 2.1E-05 48.2 18.7 211 23-285 182-416 (543)
69 1k8k_C P40, ARP2/3 complex 41 95.6 1.6 5.6E-05 41.3 24.2 110 28-161 61-172 (372)
70 3e5z_A Putative gluconolactona 95.6 1.5 5E-05 40.6 20.1 208 21-284 29-254 (296)
71 2qc5_A Streptogramin B lactona 95.5 1.4 4.9E-05 40.3 24.0 219 24-308 66-289 (300)
72 3mkq_A Coatomer beta'-subunit; 95.4 0.78 2.7E-05 49.2 19.9 108 28-163 22-129 (814)
73 2z3z_A Dipeptidyl aminopeptida 95.4 0.62 2.1E-05 49.3 18.8 194 46-278 235-437 (706)
74 2xdw_A Prolyl endopeptidase; a 95.4 1.2 4.2E-05 47.3 21.1 212 43-285 95-332 (710)
75 2ovr_B FBW7, F-BOX/WD repeat p 95.4 2.3 8E-05 41.8 24.4 182 85-313 247-430 (445)
76 2qc5_A Streptogramin B lactona 95.4 1.6 5.6E-05 39.9 24.6 221 23-308 23-247 (300)
77 1vyh_C Platelet-activating fac 95.3 1.5 5E-05 43.1 19.9 108 29-166 118-227 (410)
78 2z3z_A Dipeptidyl aminopeptida 95.3 1.3 4.4E-05 46.9 20.6 157 102-283 235-398 (706)
79 3scy_A Hypothetical bacterial 95.2 2.2 7.4E-05 40.6 21.8 115 32-163 14-130 (361)
80 3zwl_B Eukaryotic translation 95.2 1.3 4.4E-05 41.8 18.6 113 29-162 84-206 (369)
81 3dwl_C Actin-related protein 2 95.1 0.14 4.8E-06 49.4 11.5 112 28-164 20-133 (377)
82 4g56_B MGC81050 protein; prote 95.1 0.9 3.1E-05 43.7 17.3 178 86-313 150-335 (357)
83 3g4e_A Regucalcin; six bladed 95.1 1.9 6.6E-05 40.1 19.1 232 21-311 14-263 (297)
84 1kb0_A Quinohemoprotein alcoho 95.0 4.3 0.00015 43.0 24.3 127 28-169 75-208 (677)
85 1qhu_A Protein (hemopexin); be 95.0 0.91 3.1E-05 45.6 17.2 59 30-112 158-216 (460)
86 2bkl_A Prolyl endopeptidase; m 95.0 0.5 1.7E-05 50.3 16.4 215 28-282 129-357 (695)
87 2ovr_B FBW7, F-BOX/WD repeat p 95.0 3.1 0.0001 41.0 23.4 174 86-312 208-382 (445)
88 3e5z_A Putative gluconolactona 95.0 1.6 5.6E-05 40.3 18.3 198 24-278 73-288 (296)
89 1pjx_A Dfpase, DIISOPROPYLFLUO 95.0 0.99 3.4E-05 41.9 16.8 132 23-168 21-167 (314)
90 3hfq_A Uncharacterized protein 95.0 1.3 4.3E-05 42.0 17.8 103 47-167 19-123 (347)
91 4gqb_B Methylosome protein 50; 95.0 1.7 5.8E-05 41.6 18.8 177 86-313 138-323 (344)
92 3u4y_A Uncharacterized protein 94.9 2.1 7.2E-05 40.0 19.2 202 24-283 44-259 (331)
93 2ecf_A Dipeptidyl peptidase IV 94.9 1.3 4.4E-05 47.1 19.5 130 23-169 40-188 (741)
94 2bkl_A Prolyl endopeptidase; m 94.9 1.5 5.3E-05 46.4 20.0 231 44-309 92-337 (695)
95 3fm0_A Protein CIAO1; WDR39,SG 94.9 1.1 3.8E-05 42.7 17.2 114 25-163 22-137 (345)
96 1rwi_B Serine/threonine-protei 94.8 1.6 5.4E-05 39.5 17.4 191 24-276 71-264 (270)
97 3iuj_A Prolyl endopeptidase; h 94.7 1.5 5E-05 46.6 19.1 212 28-283 137-366 (693)
98 1yr2_A Prolyl oligopeptidase; 94.7 0.83 2.9E-05 48.9 17.3 216 28-283 171-402 (741)
99 2ecf_A Dipeptidyl peptidase IV 94.7 1.2 4.1E-05 47.3 18.5 73 25-119 114-189 (741)
100 3hfq_A Uncharacterized protein 94.7 1.7 5.8E-05 41.1 17.9 124 25-168 45-178 (347)
101 1p22_A F-BOX/WD-repeat protein 94.7 1.9 6.7E-05 42.4 18.9 183 30-276 182-365 (435)
102 3jrp_A Fusion protein of prote 94.6 2.5 8.6E-05 40.0 18.9 201 31-285 69-297 (379)
103 1qhu_A Protein (hemopexin); be 94.5 4.4 0.00015 40.6 21.8 59 86-163 158-216 (460)
104 3mkq_A Coatomer beta'-subunit; 94.5 5.3 0.00018 42.6 23.2 109 28-164 64-174 (814)
105 1r5m_A SIR4-interacting protei 94.5 3.7 0.00012 39.5 23.0 68 86-168 119-186 (425)
106 3v7d_B Cell division control p 94.4 4.2 0.00014 40.1 23.6 105 31-164 132-238 (464)
107 1vyh_C Platelet-activating fac 94.4 3.1 0.00011 40.6 19.5 68 86-167 203-270 (410)
108 1got_B GT-beta; complex (GTP-b 94.3 3.6 0.00012 38.9 23.5 67 85-166 153-219 (340)
109 2aq5_A Coronin-1A; WD40 repeat 94.3 2.3 8E-05 41.2 18.3 113 30-167 93-212 (402)
110 3c5m_A Oligogalacturonate lyas 94.3 0.57 1.9E-05 45.1 13.7 110 46-169 168-280 (396)
111 1ri6_A Putative isomerase YBHE 94.2 3.1 0.0001 38.7 18.5 104 31-161 5-114 (343)
112 3vl1_A 26S proteasome regulato 94.2 4.3 0.00015 39.2 22.3 109 29-167 107-217 (420)
113 1sq9_A Antiviral protein SKI8; 94.1 3.2 0.00011 39.7 18.7 113 32-167 82-221 (397)
114 2pm7_B Protein transport prote 94.1 2.9 9.9E-05 38.7 17.7 110 28-163 18-133 (297)
115 3azo_A Aminopeptidase; POP fam 94.1 1.5 5E-05 46.0 17.2 237 46-324 102-367 (662)
116 1pgu_A Actin interacting prote 94.0 3.2 0.00011 42.5 19.5 232 30-312 77-319 (615)
117 3fvz_A Peptidyl-glycine alpha- 93.8 4.5 0.00015 38.1 28.5 249 24-310 28-311 (329)
118 3ei3_B DNA damage-binding prot 93.6 2.5 8.6E-05 40.5 16.8 116 28-168 82-200 (383)
119 4ggc_A P55CDC, cell division c 93.6 4.4 0.00015 37.2 20.3 55 243-313 251-307 (318)
120 2dg1_A DRP35, lactonase; beta 93.5 4.9 0.00017 37.5 20.3 129 23-169 48-178 (333)
121 1pgu_A Actin interacting prote 93.4 6.6 0.00023 40.0 20.5 113 23-159 22-148 (615)
122 2ad6_A Methanol dehydrogenase 93.2 8.7 0.0003 39.6 22.2 127 28-169 60-194 (571)
123 2hes_X YDR267CP; beta-propelle 93.2 5.1 0.00017 37.6 18.0 71 86-169 118-191 (330)
124 1qks_A Cytochrome CD1 nitrite 93.1 5 0.00017 41.5 18.9 163 86-284 255-434 (567)
125 4aow_A Guanine nucleotide-bind 93.1 5.5 0.00019 36.9 19.4 137 29-197 96-236 (340)
126 1pjx_A Dfpase, DIISOPROPYLFLUO 93.0 5.4 0.00018 36.7 19.5 201 24-277 75-300 (314)
127 3v7d_B Cell division control p 92.9 7.6 0.00026 38.1 27.5 177 85-312 278-454 (464)
128 1ri6_A Putative isomerase YBHE 92.9 5.8 0.0002 36.7 19.1 117 25-167 43-166 (343)
129 2pm9_A Protein WEB1, protein t 92.8 5.7 0.0002 38.1 18.1 116 28-168 76-203 (416)
130 3g4e_A Regucalcin; six bladed 92.7 5.5 0.00019 36.8 17.2 187 27-253 61-262 (297)
131 1got_B GT-beta; complex (GTP-b 92.7 6.6 0.00023 37.0 24.3 221 29-312 65-292 (340)
132 4e54_B DNA damage-binding prot 92.7 0.94 3.2E-05 44.8 12.3 109 30-163 131-241 (435)
133 2ynn_A Coatomer subunit beta'; 92.6 6.3 0.00022 36.4 20.9 108 28-163 22-129 (304)
134 4aez_A CDC20, WD repeat-contai 92.5 7.9 0.00027 37.4 20.7 181 46-280 113-297 (401)
135 3pe7_A Oligogalacturonate lyas 92.5 0.93 3.2E-05 43.6 11.8 110 46-169 168-280 (388)
136 4g56_B MGC81050 protein; prote 92.4 1.3 4.4E-05 42.6 12.6 122 28-167 51-175 (357)
137 4gqb_B Methylosome protein 50; 92.1 5.4 0.00019 38.0 16.6 110 28-164 136-248 (344)
138 1yr2_A Prolyl oligopeptidase; 92.1 11 0.00038 40.0 20.7 209 44-284 131-360 (741)
139 1sq9_A Antiviral protein SKI8; 92.0 8.6 0.00029 36.6 20.8 111 26-162 22-157 (397)
140 4a11_B DNA excision repair pro 92.0 6.7 0.00023 37.3 17.4 106 30-163 111-219 (408)
141 2vdu_B TRNA (guanine-N(7)-)-me 92.0 9.9 0.00034 37.3 21.3 116 28-167 111-234 (450)
142 1jmx_B Amine dehydrogenase; ox 92.0 7.2 0.00025 36.2 17.2 116 30-164 10-136 (349)
143 1yfq_A Cell cycle arrest prote 91.9 7.9 0.00027 35.9 18.2 106 28-162 20-131 (342)
144 1nir_A Nitrite reductase; hemo 91.9 4.2 0.00014 41.7 16.4 199 46-278 248-460 (543)
145 3dwl_C Actin-related protein 2 91.9 2.9 9.9E-05 39.8 14.4 113 28-164 64-179 (377)
146 3fm0_A Protein CIAO1; WDR39,SG 91.7 3.5 0.00012 39.1 14.7 186 86-313 27-217 (345)
147 2dg1_A DRP35, lactonase; beta 91.6 4.1 0.00014 38.1 14.9 156 86-276 55-213 (333)
148 3sfz_A APAF-1, apoptotic pepti 91.6 8.3 0.00028 43.6 19.9 111 28-167 624-737 (1249)
149 3u4y_A Uncharacterized protein 91.6 8.5 0.00029 35.6 20.0 132 30-195 9-147 (331)
150 3dr2_A Exported gluconolactona 91.3 4.4 0.00015 37.6 14.7 167 28-226 94-274 (305)
151 2vdu_B TRNA (guanine-N(7)-)-me 90.9 13 0.00044 36.5 20.2 67 87-167 210-276 (450)
152 3bg1_A Protein SEC13 homolog; 90.9 5.2 0.00018 37.3 14.8 114 29-168 23-143 (316)
153 1xfd_A DIP, dipeptidyl aminope 90.6 6.7 0.00023 41.2 16.9 82 25-119 66-151 (723)
154 3b7f_A Glycosyl hydrolase, BNR 90.5 13 0.00045 35.9 20.4 215 48-308 33-297 (394)
155 2fp8_A Strictosidine synthase; 90.5 11 0.00038 35.1 19.1 211 23-276 83-313 (322)
156 3no2_A Uncharacterized protein 90.5 10 0.00035 34.8 24.0 213 31-308 5-230 (276)
157 1q7f_A NHL, brain tumor CG1071 90.2 10 0.00035 34.3 23.6 179 29-251 87-268 (286)
158 3dr2_A Exported gluconolactona 90.2 11 0.00039 34.7 17.1 123 24-169 49-185 (305)
159 1erj_A Transcriptional repress 90.2 14 0.00047 35.6 24.1 110 27-166 131-242 (393)
160 2xyi_A Probable histone-bindin 90.2 11 0.00037 36.9 17.1 63 89-163 196-264 (430)
161 4a11_B DNA excision repair pro 90.0 10 0.00035 36.0 16.5 27 135-166 254-280 (408)
162 2hes_X YDR267CP; beta-propelle 89.7 6.3 0.00021 37.0 14.3 72 29-118 117-191 (330)
163 2pm9_A Protein WEB1, protein t 89.6 15 0.0005 35.1 18.0 68 87-164 178-251 (416)
164 2aq5_A Coronin-1A; WD40 repeat 89.6 10 0.00035 36.5 16.1 111 32-164 145-256 (402)
165 3pe7_A Oligogalacturonate lyas 89.5 7.9 0.00027 36.8 15.2 218 27-284 43-281 (388)
166 3jro_A Fusion protein of prote 89.3 3.5 0.00012 44.2 13.5 96 86-197 20-122 (753)
167 2pbi_B Guanine nucleotide-bind 89.3 15 0.00051 34.8 20.2 66 87-166 210-275 (354)
168 2ymu_A WD-40 repeat protein; u 89.3 19 0.00064 36.3 18.6 68 86-168 396-463 (577)
169 2gop_A Trilobed protease; beta 89.1 14 0.00049 34.3 21.9 120 28-169 67-214 (347)
170 3scy_A Hypothetical bacterial 88.9 8.1 0.00028 36.5 14.6 117 88-226 224-346 (361)
171 2ghs_A AGR_C_1268P; regucalcin 88.8 15 0.00052 34.3 22.5 113 31-168 61-174 (326)
172 2pbi_B Guanine nucleotide-bind 88.8 16 0.00055 34.5 22.7 220 29-312 74-306 (354)
173 3c5m_A Oligogalacturonate lyas 88.6 5.6 0.00019 37.9 13.3 109 46-169 216-336 (396)
174 3lrv_A PRE-mRNA-splicing facto 88.5 16 0.00055 34.2 20.8 154 30-222 47-204 (343)
175 3ott_A Two-component system se 88.4 28 0.00097 36.9 23.2 194 26-283 69-267 (758)
176 1kb0_A Quinohemoprotein alcoho 88.4 27 0.00094 36.7 21.4 125 82-226 73-208 (677)
177 3k26_A Polycomb protein EED; W 88.3 16 0.00055 33.9 17.6 107 31-164 85-194 (366)
178 2fp8_A Strictosidine synthase; 88.3 16 0.00055 33.9 19.5 231 46-309 40-301 (322)
179 3sfz_A APAF-1, apoptotic pepti 88.3 6.3 0.00021 44.6 15.3 109 28-166 970-1078(1249)
180 4e54_B DNA damage-binding prot 88.1 2.3 7.9E-05 41.9 10.3 98 86-197 131-230 (435)
181 3odt_A Protein DOA1; ubiquitin 88.0 15 0.00052 33.2 17.3 147 86-282 154-302 (313)
182 2gop_A Trilobed protease; beta 87.9 17 0.00059 33.8 17.3 192 44-284 41-259 (347)
183 4gga_A P55CDC, cell division c 87.6 21 0.00072 34.5 18.7 97 46-165 125-221 (420)
184 3dm0_A Maltose-binding peripla 87.3 31 0.0011 36.0 22.7 140 28-197 439-582 (694)
185 2p4o_A Hypothetical protein; p 87.2 18 0.00063 33.3 23.7 119 17-163 29-148 (306)
186 3i2n_A WD repeat-containing pr 86.9 9.4 0.00032 35.5 13.6 107 32-164 32-150 (357)
187 3ei3_B DNA damage-binding prot 86.3 23 0.00078 33.5 17.8 70 88-169 87-157 (383)
188 3no2_A Uncharacterized protein 86.3 20 0.00068 32.8 17.0 87 86-195 4-95 (276)
189 1yfq_A Cell cycle arrest prote 86.0 21 0.00071 32.9 18.8 106 28-162 65-179 (342)
190 3o4h_A Acylamino-acid-releasin 85.8 15 0.0005 37.6 15.3 98 48-166 134-231 (582)
191 1pex_A Collagenase-3, MMP-13; 85.3 19 0.00064 31.7 14.7 153 81-281 28-197 (207)
192 3vl1_A 26S proteasome regulato 85.3 27 0.00091 33.4 24.8 68 28-115 148-216 (420)
193 3odt_A Protein DOA1; ubiquitin 84.9 22 0.00075 32.1 20.4 15 267-281 246-260 (313)
194 1itv_A MMP9; adaptive molecula 84.3 20 0.00068 31.1 14.5 141 25-196 12-165 (195)
195 4aow_A Guanine nucleotide-bind 84.0 26 0.00088 32.1 21.6 108 31-164 51-161 (340)
196 1w6s_A Methanol dehydrogenase 83.9 43 0.0015 34.7 21.0 126 29-169 61-200 (599)
197 2pm7_B Protein transport prote 83.9 25 0.00087 32.0 17.0 27 31-62 67-93 (297)
198 3mmy_A MRNA export factor; mRN 83.4 28 0.00096 32.1 20.2 106 31-164 54-162 (368)
199 3fvz_A Peptidyl-glycine alpha- 83.4 29 0.00099 32.3 25.2 216 25-276 96-322 (329)
200 3dm0_A Maltose-binding peripla 83.2 47 0.0016 34.6 20.6 64 86-163 441-504 (694)
201 2ad6_A Methanol dehydrogenase 83.1 44 0.0015 34.2 17.8 77 28-117 113-193 (571)
202 3hxj_A Pyrrolo-quinoline quino 82.2 30 0.001 31.7 16.3 101 30-168 107-211 (330)
203 3o4h_A Acylamino-acid-releasin 81.9 14 0.00046 37.8 13.0 154 87-281 75-232 (582)
204 1itv_A MMP9; adaptive molecula 81.7 25 0.00087 30.5 14.3 151 81-279 11-177 (195)
205 1kv9_A Type II quinohemoprotei 81.4 56 0.0019 34.2 26.2 126 28-169 64-196 (668)
206 1yiq_A Quinohemoprotein alcoho 81.0 58 0.002 34.2 27.0 127 28-168 68-200 (689)
207 3ju4_A Endo-N-acetylneuraminid 80.8 43 0.0015 32.6 21.3 190 110-311 268-482 (670)
208 3b7f_A Glycosyl hydrolase, BNR 80.7 41 0.0014 32.2 20.6 195 23-251 58-297 (394)
209 3mmy_A MRNA export factor; mRN 80.3 36 0.0012 31.3 18.2 64 29-113 96-162 (368)
210 3i2n_A WD repeat-containing pr 79.6 38 0.0013 31.1 15.5 68 87-164 31-101 (357)
211 3bg1_A Protein SEC13 homolog; 79.0 25 0.00086 32.4 12.9 68 31-116 71-142 (316)
212 3iuj_A Prolyl endopeptidase; h 79.0 67 0.0023 33.6 20.4 170 86-285 139-326 (693)
213 1k32_A Tricorn protease; prote 78.7 80 0.0027 34.8 18.8 105 46-169 358-468 (1045)
214 1jmx_B Amine dehydrogenase; ox 78.6 24 0.00083 32.5 12.7 69 86-167 10-79 (349)
215 1pby_B Quinohemoprotein amine 78.5 39 0.0013 30.7 18.5 122 24-168 38-169 (337)
216 1erj_A Transcriptional repress 78.2 48 0.0016 31.6 18.4 93 86-197 134-228 (393)
217 3hrp_A Uncharacterized protein 78.0 52 0.0018 31.9 25.8 210 23-284 134-362 (409)
218 3gre_A Serine/threonine-protei 76.6 55 0.0019 31.4 19.0 67 136-222 180-248 (437)
219 2ymu_A WD-40 repeat protein; u 75.5 69 0.0024 32.0 21.4 68 86-168 314-381 (577)
220 2ynn_A Coatomer subunit beta'; 75.4 48 0.0017 30.2 21.9 108 28-163 64-173 (304)
221 1k32_A Tricorn protease; prote 73.3 28 0.00095 38.6 13.1 166 24-226 300-468 (1045)
222 1yiq_A Quinohemoprotein alcoho 72.9 64 0.0022 33.9 15.2 120 137-282 70-200 (689)
223 2xyi_A Probable histone-bindin 72.8 70 0.0024 30.8 15.9 26 132-162 187-213 (430)
224 1pex_A Collagenase-3, MMP-13; 72.5 49 0.0017 28.9 15.1 141 26-195 29-182 (207)
225 2xe4_A Oligopeptidase B; hydro 72.4 1E+02 0.0035 32.6 18.7 203 29-274 184-398 (751)
226 1qks_A Cytochrome CD1 nitrite 71.7 93 0.0032 31.8 21.5 228 46-307 266-520 (567)
227 3lrv_A PRE-mRNA-splicing facto 71.2 65 0.0022 29.8 22.3 68 86-166 138-205 (343)
228 3f3f_A Nucleoporin SEH1; struc 71.1 59 0.002 29.3 22.4 111 29-164 21-145 (351)
229 3iz6_a 40S ribosomal protein R 71.1 71 0.0024 30.2 23.6 59 243-313 308-367 (380)
230 1flg_A Protein (quinoprotein e 68.9 1.1E+02 0.0037 31.4 22.1 122 28-168 66-201 (582)
231 3c7x_A Matrix metalloproteinas 68.6 43 0.0015 29.0 10.6 109 28-164 59-177 (196)
232 3ba0_A Macrophage metalloelast 68.2 79 0.0027 30.3 13.4 153 81-281 185-355 (365)
233 2p4o_A Hypothetical protein; p 67.6 74 0.0025 29.0 20.6 117 23-162 75-198 (306)
234 3c7x_A Matrix metalloproteinas 66.9 28 0.00096 30.2 9.1 66 85-164 60-129 (196)
235 3ju4_A Endo-N-acetylneuraminid 66.6 99 0.0034 30.1 20.8 175 73-254 280-482 (670)
236 1pby_B Quinohemoprotein amine 66.6 75 0.0026 28.7 14.6 57 103-167 12-70 (337)
237 1su3_A Interstitial collagenas 65.5 1.1E+02 0.0038 30.3 14.3 153 81-281 267-437 (450)
238 1gen_A Gelatinase A; hydrolase 65.3 72 0.0025 28.1 15.0 66 80-160 34-103 (218)
239 3kci_A Probable E3 ubiquitin-p 65.1 99 0.0034 29.6 21.0 19 21-39 116-134 (389)
240 3qhy_B Beta-lactamase inhibito 64.5 40 0.0014 31.0 10.2 95 79-196 151-245 (282)
241 1su3_A Interstitial collagenas 63.6 63 0.0022 32.0 12.0 139 29-195 271-422 (450)
242 1kv9_A Type II quinohemoprotei 62.8 98 0.0033 32.3 14.0 119 137-282 66-195 (668)
243 1hxn_A Hemopexin, HPX; heme, b 62.6 82 0.0028 27.8 12.2 113 24-162 21-144 (219)
244 4d9s_A UVB-resistance protein 62.4 1.1E+02 0.0039 29.4 26.9 18 128-145 182-199 (406)
245 1xfd_A DIP, dipeptidyl aminope 61.5 76 0.0026 32.9 13.0 109 47-169 38-150 (723)
246 3k26_A Polycomb protein EED; W 61.2 98 0.0034 28.2 14.9 106 138-277 85-193 (366)
247 1gen_A Gelatinase A; hydrolase 60.7 88 0.003 27.5 12.9 144 24-195 35-192 (218)
248 4d9s_A UVB-resistance protein 59.7 1.3E+02 0.0044 29.0 23.8 19 21-39 25-43 (406)
249 3frx_A Guanine nucleotide-bind 58.2 1.1E+02 0.0038 27.9 21.9 109 28-166 74-189 (319)
250 4a5s_A Dipeptidyl peptidase 4 58.2 1.8E+02 0.0062 30.4 18.3 35 28-62 70-108 (740)
251 1w6s_A Methanol dehydrogenase 57.7 1.7E+02 0.006 30.0 17.1 73 33-118 124-200 (599)
252 3of7_A Regulator of chromosome 57.4 1.5E+02 0.0052 29.2 17.8 19 21-39 76-94 (473)
253 3ba0_A Macrophage metalloelast 57.3 1.1E+02 0.0039 29.1 12.3 109 86-224 236-355 (365)
254 1z68_A Fibroblast activation p 57.3 1.8E+02 0.0062 30.0 17.5 66 103-169 225-298 (719)
255 3mvd_K Regulator of chromosome 57.3 1.4E+02 0.0048 28.8 20.1 18 21-38 136-153 (423)
256 3qhy_B Beta-lactamase inhibito 56.7 1.2E+02 0.004 27.7 14.6 173 21-254 33-207 (282)
257 2ghs_A AGR_C_1268P; regucalcin 56.5 1.2E+02 0.0042 27.8 20.2 111 26-161 96-209 (326)
258 3oyo_A Hemopexin fold protein 56.2 54 0.0018 29.1 9.1 63 86-162 127-198 (225)
259 3iz6_a 40S ribosomal protein R 56.0 1.3E+02 0.0046 28.1 20.3 109 33-168 172-286 (380)
260 2xzm_R RACK1; ribosome, transl 54.9 1.3E+02 0.0044 27.7 18.7 64 29-112 86-150 (343)
261 2xe4_A Oligopeptidase B; hydro 54.5 2.1E+02 0.0073 30.1 17.0 88 101-196 294-387 (751)
262 4h5i_A Guanine nucleotide-exch 54.4 1.4E+02 0.0048 27.9 16.3 76 84-166 228-304 (365)
263 1npe_A Nidogen, entactin; glyc 53.6 1.2E+02 0.004 26.8 25.9 198 23-280 39-242 (267)
264 1a12_A RCC1, regulator of chro 53.0 1.6E+02 0.0056 28.2 19.2 18 21-38 120-137 (413)
265 3hxj_A Pyrrolo-quinoline quino 51.5 1.4E+02 0.0047 27.0 14.3 104 26-167 143-250 (330)
266 1nr0_A Actin interacting prote 50.2 2.2E+02 0.0075 28.9 23.1 73 86-168 201-276 (611)
267 3frx_A Guanine nucleotide-bind 50.0 1.5E+02 0.0051 26.9 16.7 65 86-164 76-140 (319)
268 3gre_A Serine/threonine-protei 49.0 1.8E+02 0.0061 27.6 22.7 70 86-167 181-250 (437)
269 1ck7_A Protein (gelatinase A); 49.0 1.3E+02 0.0046 31.1 11.8 113 24-163 447-567 (631)
270 2cn3_A Xyloglucanase, beta-1,4 48.3 2.7E+02 0.0091 29.3 28.3 264 2-310 11-322 (737)
271 1flg_A Protein (quinoprotein e 43.7 1.5E+02 0.0052 30.3 11.4 77 45-143 465-545 (582)
272 1sqj_A OXG-RCBH, oligoxylogluc 43.2 3.3E+02 0.011 28.9 29.3 209 47-284 38-277 (789)
273 3tc9_A Hypothetical hydrolase; 43.0 2.4E+02 0.0082 27.3 12.9 110 30-168 149-263 (430)
274 4h5i_A Guanine nucleotide-exch 42.6 2.1E+02 0.0073 26.6 23.3 33 24-56 19-53 (365)
275 3lp9_A LS-24; SEED albumin, pl 40.2 42 0.0014 29.8 5.7 62 86-163 129-202 (227)
276 3hrp_A Uncharacterized protein 40.1 2.6E+02 0.0088 26.8 17.6 151 86-277 141-299 (409)
277 3k6s_A Integrin alpha-X; cell 39.7 2.5E+02 0.0084 31.4 12.9 161 19-186 333-509 (1095)
278 1ck7_A Protein (gelatinase A); 38.8 2E+02 0.0069 29.8 11.2 65 81-160 448-516 (631)
279 1a12_A RCC1, regulator of chro 36.4 2.9E+02 0.0098 26.4 11.7 19 21-39 241-259 (413)
280 1fwx_A Nitrous oxide reductase 36.2 3E+02 0.01 28.3 11.9 55 101-163 253-309 (595)
281 3mvd_K Regulator of chromosome 36.2 2.7E+02 0.0092 26.7 11.5 18 21-38 188-205 (423)
282 3f3f_A Nucleoporin SEH1; struc 35.7 2.3E+02 0.008 25.1 18.4 65 86-163 22-91 (351)
283 3oyo_A Hemopexin fold protein 35.1 2.3E+02 0.0079 24.8 14.6 97 85-195 69-188 (225)
284 1n7d_A LDL receptor, low-densi 33.9 4.3E+02 0.015 27.5 18.3 204 47-308 387-601 (699)
285 3of7_A Regulator of chromosome 33.0 1.7E+02 0.0059 28.8 9.6 18 21-38 157-174 (473)
286 2mad_H Methylamine dehydrogena 32.6 3.2E+02 0.011 25.7 16.1 73 85-167 277-355 (373)
287 3kci_A Probable E3 ubiquitin-p 32.2 3E+02 0.01 26.0 11.0 18 128-145 168-185 (389)
288 4ggc_A P55CDC, cell division c 32.2 2.6E+02 0.009 24.6 19.9 58 46-116 45-103 (318)
289 3dw8_B Serine/threonine-protei 31.0 3.4E+02 0.011 25.5 16.1 26 27-57 36-61 (447)
290 3k6s_A Integrin alpha-X; cell 30.9 5.9E+02 0.02 28.3 16.1 185 79-279 336-545 (1095)
291 1n7d_A LDL receptor, low-densi 30.6 4.8E+02 0.016 27.1 16.8 151 85-278 463-616 (699)
292 2p9w_A MAL S 1 allergenic prot 30.0 3.5E+02 0.012 25.4 14.3 148 25-197 142-305 (334)
293 1z68_A Fibroblast activation p 29.1 4.5E+02 0.015 26.9 12.6 129 28-169 261-402 (719)
294 4hvt_A Ritya.17583.B, post-pro 29.0 3.7E+02 0.012 28.2 11.6 102 46-166 269-385 (711)
295 1npe_A Nidogen, entactin; glyc 28.4 3E+02 0.01 24.0 23.1 180 80-308 39-225 (267)
296 4hw6_A Hypothetical protein, I 27.3 4.3E+02 0.015 25.5 12.3 134 30-194 152-291 (433)
297 1nr0_A Actin interacting prote 27.1 4.9E+02 0.017 26.1 18.4 114 29-164 200-315 (611)
298 2p9w_A MAL S 1 allergenic prot 26.7 4E+02 0.014 25.0 22.8 226 46-310 35-304 (334)
299 2ece_A 462AA long hypothetical 26.2 4.8E+02 0.017 25.7 14.0 35 23-58 141-176 (462)
300 2hz6_A Endoplasmic reticulum t 25.4 64 0.0022 30.7 4.6 69 23-115 2-74 (369)
301 4hvt_A Ritya.17583.B, post-pro 25.1 3.8E+02 0.013 28.1 10.9 151 101-285 268-438 (711)
302 2xzm_R RACK1; ribosome, transl 23.1 4.2E+02 0.014 24.0 20.4 64 86-163 87-150 (343)
303 2oiz_A Aromatic amine dehydrog 21.0 2.6E+02 0.0088 26.1 8.0 65 86-163 265-335 (361)
304 2cn3_A Xyloglucanase, beta-1,4 20.9 3.8E+02 0.013 28.1 10.0 81 3-94 233-321 (737)
No 1
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=3.6e-47 Score=372.48 Aligned_cols=290 Identities=18% Similarity=0.247 Sum_probs=245.9
Q ss_pred CCCCCCCcceeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEc
Q 011542 14 GTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFG 93 (483)
Q Consensus 14 g~~p~~R~~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~G 93 (483)
++.|.+|.+|+++.++ ++||+|||. +....+++++||+.+++|..++ ++|.+|.+|++++++++||++|
T Consensus 9 ~~~~~~~~~~~~~~~~-~~i~v~GG~-~~~~~~~~~~~d~~~~~W~~~~---------~~p~~r~~~~~~~~~~~lyv~G 77 (308)
T 1zgk_A 9 HSSGLVPRGSHAPKVG-RLIYTAGGY-FRQSLSYLEAYNPSNGTWLRLA---------DLQVPRSGLAGCVVGGLLYAVG 77 (308)
T ss_dssp ------------CCCC-CCEEEECCB-SSSBCCCEEEEETTTTEEEECC---------CCSSCCBSCEEEEETTEEEEEC
T ss_pred ccCCeeeCCccccCCC-CEEEEEeCc-CCCCcceEEEEcCCCCeEeECC---------CCCcccccceEEEECCEEEEEC
Confidence 3678899999999888 589999999 5667899999999999999986 4688999999999999999999
Q ss_pred cc----cCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEec
Q 011542 94 GR----FGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLP 169 (483)
Q Consensus 94 G~----~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~ 169 (483)
|. .+...++++++||+.+++|+++++ +|.+|..|+++++++ +|||+||..+....+++++||+.+++|+.++
T Consensus 78 G~~~~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 153 (308)
T 1zgk_A 78 GRNNSPDGNTDSSALDCYNPMTNQWSPCAP---MSVPRNRIGVGVIDG-HIYAVGGSHGCIHHNSVERYEPERDEWHLVA 153 (308)
T ss_dssp CEEEETTEEEECCCEEEEETTTTEEEECCC---CSSCCBTCEEEEETT-EEEEECCEETTEECCCEEEEETTTTEEEECC
T ss_pred CCcCCCCCCeecceEEEECCCCCeEeECCC---CCcCccccEEEEECC-EEEEEcCCCCCcccccEEEECCCCCeEeECC
Confidence 98 445667899999999999999985 899999999999965 9999999988778899999999999999998
Q ss_pred cCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEE
Q 011542 170 VTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLL 249 (483)
Q Consensus 170 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v 249 (483)
++|.+|.+|+++.++++|||+||..... .++.++.||+.+++|+.+. ++|.+|..|++++.+++||+
T Consensus 154 ---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-------~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv 220 (308)
T 1zgk_A 154 ---PMLTRRIGVGVAVLNRLLYAVGGFDGTN-------RLNSAECYYPERNEWRMIT---AMNTIRSGAGVCVLHNCIYA 220 (308)
T ss_dssp ---CCSSCCBSCEEEEETTEEEEECCBCSSC-------BCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEE
T ss_pred ---CCCccccceEEEEECCEEEEEeCCCCCC-------cCceEEEEeCCCCeEeeCC---CCCCccccceEEEECCEEEE
Confidence 8999999999999999999999987654 2577888999999999997 78999999999999999999
Q ss_pred EcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEccCCCCCccCcEEEEcCCCCcc
Q 011542 250 FGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDPI 329 (483)
Q Consensus 250 ~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~~~~~~d~w~l~~~~d~~ 329 (483)
+||.+... ..+++++||+.+++|+.++. .|.+|..|++++++++|||+||.++...++++|.|+ +.
T Consensus 221 ~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd----~~ 286 (308)
T 1zgk_A 221 AGGYDGQD-------QLNSVERYDVETETWTFVAP---MKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYD----PD 286 (308)
T ss_dssp ECCBCSSS-------BCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEE----TT
T ss_pred EeCCCCCC-------ccceEEEEeCCCCcEEECCC---CCCCccceEEEEECCEEEEEcCcCCCcccceEEEEc----CC
Confidence 99987532 57899999999999999986 466899999999999999999998877888988655 45
Q ss_pred cceeecCCCCCCCCCC
Q 011542 330 AKRYTESPPKVLPENK 345 (483)
Q Consensus 330 ~~~w~~~~~~~~~~~~ 345 (483)
+++|+..+.++.++..
T Consensus 287 ~~~W~~~~~~p~~r~~ 302 (308)
T 1zgk_A 287 TDTWSEVTRMTSGRSG 302 (308)
T ss_dssp TTEEEEEEECSSCCBS
T ss_pred CCEEeecCCCCCCccc
Confidence 7788888666655443
No 2
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=6.3e-45 Score=355.29 Aligned_cols=275 Identities=21% Similarity=0.318 Sum_probs=241.2
Q ss_pred CcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEEC
Q 011542 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDT 109 (483)
Q Consensus 30 ~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 109 (483)
++.||++||.+. ...+++++||+.+++|..++ ++|.+|..|++++++++||++||..+...++++++||+
T Consensus 15 ~~~i~v~GG~~~-~~~~~~~~~d~~~~~W~~~~---------~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~ 84 (302)
T 2xn4_A 15 PKLMVVVGGQAP-KAIRSVECYDFKEERWHQVA---------ELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDP 84 (302)
T ss_dssp CEEEEEECCBSS-SBCCCEEEEETTTTEEEEEC---------CCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEET
T ss_pred CCEEEEECCCCC-CCCCcEEEEcCcCCcEeEcc---------cCCcccccceEEEECCEEEEEeCcCCCccccceEEECC
Confidence 379999999865 46789999999999999986 46889999999999999999999988778899999999
Q ss_pred CCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEeCCE
Q 011542 110 DIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKR 189 (483)
Q Consensus 110 ~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~ 189 (483)
.+++|+++++ +|.+|..|+++++++ +|||+||.++...++++++||+.+++|+.++ ++|.+|..|+++.++++
T Consensus 85 ~~~~W~~~~~---~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~ 157 (302)
T 2xn4_A 85 VKDQWTSVAN---MRDRRSTLGAAVLNG-LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA---PMNTRRSSVGVGVVGGL 157 (302)
T ss_dssp TTTEEEEECC---CSSCCBSCEEEEETT-EEEEEEEECSSCEEEEEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTE
T ss_pred CCCceeeCCC---CCccccceEEEEECC-EEEEEcCCCCCccCceEEEEeCCCCeEeecC---CCCCcccCceEEEECCE
Confidence 9999999985 999999999999965 9999999988778899999999999999998 89999999999999999
Q ss_pred EEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcE
Q 011542 190 LLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDT 269 (483)
Q Consensus 190 lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v 269 (483)
|||+||...... ..++.++.||+.+++|+.+. ++|.+|..|++++.+++||++||.+.. ...+++
T Consensus 158 iyv~GG~~~~~~-----~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~-------~~~~~~ 222 (302)
T 2xn4_A 158 LYAVGGYDVASR-----QCLSTVECYNATTNEWTYIA---EMSTRRSGAGVGVLNNLLYAVGGHDGP-------LVRKSV 222 (302)
T ss_dssp EEEECCEETTTT-----EECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCBSSS-------SBCCCE
T ss_pred EEEEeCCCCCCC-----ccccEEEEEeCCCCcEEECC---CCccccccccEEEECCEEEEECCCCCC-------cccceE
Confidence 999999865431 12467888899999999997 789999999999999999999998753 357899
Q ss_pred EEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEccCCCCCccCcEEEEcCCCCcccceeecCC-CCCCCC
Q 011542 270 IILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDPIAKRYTESP-PKVLPE 343 (483)
Q Consensus 270 ~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~~~~~~d~w~l~~~~d~~~~~w~~~~-~~~~~~ 343 (483)
++||+.+++|+.++.+ |.+|..|+++.++++|||+||.++...++++|.|+ +.+++|+..+ .++.++
T Consensus 223 ~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd----~~~~~W~~~~~~~~~~r 290 (302)
T 2xn4_A 223 EVYDPTTNAWRQVADM---NMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYN----PTTDKWTVVSSCMSTGR 290 (302)
T ss_dssp EEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEE----TTTTEEEECSSCCSSCC
T ss_pred EEEeCCCCCEeeCCCC---CCccccCeEEEECCEEEEECCcCCCcccccEEEEc----CCCCeEEECCcccCccc
Confidence 9999999999999864 56899999999999999999998877788887654 5577898875 444443
No 3
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=6.9e-45 Score=355.69 Aligned_cols=275 Identities=20% Similarity=0.231 Sum_probs=240.8
Q ss_pred cEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECC
Q 011542 31 SKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTD 110 (483)
Q Consensus 31 ~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 110 (483)
+.||++||... .+++++||+.+++|..++ ++|.+|.+|++++++++||++||.. ...++++++||+.
T Consensus 12 ~~l~~~GG~~~---~~~~~~~d~~~~~W~~~~---------~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d~~ 78 (306)
T 3ii7_A 12 DYRIALFGGSQ---PQSCRYFNPKDYSWTDIR---------CPFEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCYNVV 78 (306)
T ss_dssp CEEEEEECCSS---TTSEEEEETTTTEEEECC---------CCSCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEEETT
T ss_pred ceEEEEeCCCC---CceEEEecCCCCCEecCC---------CCCcccceeEEEEECCEEEEEeCCC-CCCcceEEEEeCC
Confidence 68999999765 789999999999999986 4688999999999999999999988 6778999999999
Q ss_pred CCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCC-CCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEeCCE
Q 011542 111 IWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWD-GKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKR 189 (483)
Q Consensus 111 t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~-~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~ 189 (483)
+++|..+++ +|.+|..|+++++++ +|||+||.+ +....+++++||+.+++|+.++ ++|.+|..|+++.++++
T Consensus 79 ~~~W~~~~~---~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~ 151 (306)
T 3ii7_A 79 KDSWYSKLG---PPTPRDSLAACAAEG-KIYTSGGSEVGNSALYLFECYDTRTESWHTKP---SMLTQRCSHGMVEANGL 151 (306)
T ss_dssp TTEEEEEEC---CSSCCBSCEEEEETT-EEEEECCBBTTBSCCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTE
T ss_pred CCeEEECCC---CCccccceeEEEECC-EEEEECCCCCCCcEeeeEEEEeCCCCceEeCC---CCcCCcceeEEEEECCE
Confidence 999999985 899999999999965 999999987 5567899999999999999998 89999999999999999
Q ss_pred EEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcE
Q 011542 190 LLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDT 269 (483)
Q Consensus 190 lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v 269 (483)
|||+||....... . ..++.++.||+.+++|+.+. ++|.+|..|++++.+++||++||.+.. ...+++
T Consensus 152 iyv~GG~~~~~~~-~--~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~-------~~~~~~ 218 (306)
T 3ii7_A 152 IYVCGGSLGNNVS-G--RVLNSCEVYDPATETWTELC---PMIEARKNHGLVFVKDKIFAVGGQNGL-------GGLDNV 218 (306)
T ss_dssp EEEECCEESCTTT-C--EECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEETT-------EEBCCE
T ss_pred EEEECCCCCCCCc-c--cccceEEEeCCCCCeEEECC---CccchhhcceEEEECCEEEEEeCCCCC-------CCCceE
Confidence 9999998654321 0 02577888899999999998 789999999999999999999998653 367899
Q ss_pred EEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEccCCCCCccCcEEEEcCCCCcccceeecCCCCCCCCCC
Q 011542 270 IILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDPIAKRYTESPPKVLPENK 345 (483)
Q Consensus 270 ~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~~~~~~d~w~l~~~~d~~~~~w~~~~~~~~~~~~ 345 (483)
++||+.+++|+.++.+ |.+|..|+++.++++|||+||.++...++++|.|+ +.+++|+..+..+.++..
T Consensus 219 ~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd----~~~~~W~~~~~~~~~r~~ 287 (306)
T 3ii7_A 219 EYYDIKLNEWKMVSPM---PWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYN----TETDKWVANSKVRAFPVT 287 (306)
T ss_dssp EEEETTTTEEEECCCC---SCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEE----TTTTEEEEEEEEECCSCT
T ss_pred EEeeCCCCcEEECCCC---CCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEc----CCCCeEEeCCCcccccce
Confidence 9999999999999764 66999999999999999999998887888988655 557788888666655544
No 4
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-44 Score=352.79 Aligned_cols=274 Identities=20% Similarity=0.325 Sum_probs=242.2
Q ss_pred CcEEEEEcc-cCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEE
Q 011542 30 KSKVVVFGG-LVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLD 108 (483)
Q Consensus 30 ~~~l~v~GG-~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd 108 (483)
+++||++|| .++....+++++||+.+++|..++ ++|.+|.+|++++++++||++||..+...++++++||
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~---------~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d 84 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLP---------SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLD 84 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECC---------CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEE
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCC---------CCChhhccccEEEECCEEEEEcCCCCCccCceEEEEE
Confidence 479999999 566778899999999999999986 4678999999999999999999998777889999999
Q ss_pred CCCCe---EEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEE
Q 011542 109 TDIWQ---WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATM 185 (483)
Q Consensus 109 ~~t~~---W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~ 185 (483)
+.+++ |+.+++ +|.+|..|+++++++ +||++||..+....+++++||+.+++|+.++ ++|.+|.+|+++.
T Consensus 85 ~~~~~~~~W~~~~~---~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~ 157 (301)
T 2vpj_A 85 YTADEDGVWYSVAP---MNVRRGLAGATTLGD-MIYVSGGFDGSRRHTSMERYDPNIDQWSMLG---DMQTAREGAGLVV 157 (301)
T ss_dssp TTCCTTCCCEEECC---CSSCCBSCEEEEETT-EEEEECCBCSSCBCCEEEEEETTTTEEEEEE---ECSSCCBSCEEEE
T ss_pred CCCCCCCeeEECCC---CCCCccceeEEEECC-EEEEEcccCCCcccceEEEEcCCCCeEEECC---CCCCCcccceEEE
Confidence 99999 999974 899999999999965 9999999988778899999999999999998 8999999999999
Q ss_pred eCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCccccee
Q 011542 186 VEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIY 265 (483)
Q Consensus 186 ~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~ 265 (483)
++++|||+||..... .++.++.||+.+++|+.+. ++|.+|..|++++.+++||++||.+... .
T Consensus 158 ~~~~iyv~GG~~~~~-------~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~~-------~ 220 (301)
T 2vpj_A 158 ASGVIYCLGGYDGLN-------ILNSVEKYDPHTGHWTNVT---PMATKRSGAGVALLNDHIYVVGGFDGTA-------H 220 (301)
T ss_dssp ETTEEEEECCBCSSC-------BCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCBCSSS-------B
T ss_pred ECCEEEEECCCCCCc-------ccceEEEEeCCCCcEEeCC---CCCcccccceEEEECCEEEEEeCCCCCc-------c
Confidence 999999999986543 3577888999999999997 7899999999999999999999987643 4
Q ss_pred eCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEccCCCCCccCcEEEEcCCCCcccceeecCCCCCCCC
Q 011542 266 YNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKSTFGDIWWLVPEEDPIAKRYTESPPKVLPE 343 (483)
Q Consensus 266 ~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~~~~~~d~w~l~~~~d~~~~~w~~~~~~~~~~ 343 (483)
.+++++||+.+++|+.++.+ |.+|..|+++.++++|||+||.++...++++|.|+ +.+++|+..+.++.++
T Consensus 221 ~~~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd----~~~~~W~~~~~~~~~r 291 (301)
T 2vpj_A 221 LSSVEAYNIRTDSWTTVTSM---TTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYD----PIIDSWEVVTSMGTQR 291 (301)
T ss_dssp CCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEE----TTTTEEEEEEEEEEEE
T ss_pred cceEEEEeCCCCcEEECCCC---CCcccceeEEEECCEEEEEcCcCCCcccccEEEEc----CCCCeEEEcCCCCccc
Confidence 78999999999999999764 66899999999999999999998877778887655 4567888776544443
No 5
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.7e-43 Score=343.73 Aligned_cols=260 Identities=18% Similarity=0.300 Sum_probs=231.3
Q ss_pred ceEEceeCCCCCCCCCCCcceeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEE
Q 011542 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIA 82 (483)
Q Consensus 3 ~W~~~~~~~~~g~~p~~R~~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~ 82 (483)
+|+++. ++|.+|.+|++++++ ++|||+||.++....+++++||+.+++|+.++ ++|.+|..|++
T Consensus 41 ~W~~~~------~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~---------~~p~~r~~~~~ 104 (302)
T 2xn4_A 41 RWHQVA------ELPSRRCRAGMVYMA-GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA---------NMRDRRSTLGA 104 (302)
T ss_dssp EEEEEC------CCSSCCBSCEEEEET-TEEEEESCBCSSSBCCCEEEEETTTTEEEEEC---------CCSSCCBSCEE
T ss_pred cEeEcc------cCCcccccceEEEEC-CEEEEEeCcCCCccccceEEECCCCCceeeCC---------CCCccccceEE
Confidence 698886 689999999999886 69999999987778899999999999999987 46889999999
Q ss_pred EEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCC--cCCccEEEEEC
Q 011542 83 VAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGK--KWLSDVYVLDT 160 (483)
Q Consensus 83 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~--~~~~~v~~yd~ 160 (483)
++++++||++||..+...++++++||+.+++|+.+++ +|.+|..|+++++++ +||++||.+.. ...+++++||+
T Consensus 105 ~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~ 180 (302)
T 2xn4_A 105 AVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP---MNTRRSSVGVGVVGG-LLYAVGGYDVASRQCLSTVECYNA 180 (302)
T ss_dssp EEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC---CSSCCBSCEEEEETT-EEEEECCEETTTTEECCCEEEEET
T ss_pred EEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC---CCCcccCceEEEECC-EEEEEeCCCCCCCccccEEEEEeC
Confidence 9999999999999887778999999999999999985 899999999999865 99999998665 35889999999
Q ss_pred CCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEE
Q 011542 161 ISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTI 240 (483)
Q Consensus 161 ~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~ 240 (483)
.+++|+.++ ++|.+|.+|+++.++++|||+||..... .++.++.||+++++|+.+. ++|.+|..|++
T Consensus 181 ~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-------~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~ 247 (302)
T 2xn4_A 181 TTNEWTYIA---EMSTRRSGAGVGVLNNLLYAVGGHDGPL-------VRKSVEVYDPTTNAWRQVA---DMNMCRRNAGV 247 (302)
T ss_dssp TTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCBSSSS-------BCCCEEEEETTTTEEEEEC---CCSSCCBSCEE
T ss_pred CCCcEEECC---CCccccccccEEEECCEEEEECCCCCCc-------ccceEEEEeCCCCCEeeCC---CCCCccccCeE
Confidence 999999998 8999999999999999999999986543 2467888899999999998 78999999999
Q ss_pred EEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEE
Q 011542 241 TSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLY 304 (483)
Q Consensus 241 ~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i 304 (483)
++.+++||++||.+.. ...+++++||+.+++|+.++.. .|.+|..|++++++++|
T Consensus 248 ~~~~~~i~v~GG~~~~-------~~~~~v~~yd~~~~~W~~~~~~--~~~~r~~~~~~~~~~~i 302 (302)
T 2xn4_A 248 CAVNGLLYVVGGDDGS-------CNLASVEYYNPTTDKWTVVSSC--MSTGRSYAGVTVIDKRL 302 (302)
T ss_dssp EEETTEEEEECCBCSS-------SBCCCEEEEETTTTEEEECSSC--CSSCCBSCEEEEEEC--
T ss_pred EEECCEEEEECCcCCC-------cccccEEEEcCCCCeEEECCcc--cCcccccceEEEecccC
Confidence 9999999999998653 2578999999999999999732 46799999999998765
No 6
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=8.9e-43 Score=341.30 Aligned_cols=256 Identities=18% Similarity=0.284 Sum_probs=230.4
Q ss_pred cceEEceeCCCCCCCCCCCcceeEEEECCcEEEEEccc----CCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCc
Q 011542 2 HYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGL----VDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPR 77 (483)
Q Consensus 2 ~~W~~~~~~~~~g~~p~~R~~h~~~~~~~~~l~v~GG~----~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R 77 (483)
.+|++++ ++|.+|.+|++++++ ++|||+||. .+....+++++||+.+++|..++ ++|.+|
T Consensus 49 ~~W~~~~------~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~---------~~p~~r 112 (308)
T 1zgk_A 49 GTWLRLA------DLQVPRSGLAGCVVG-GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA---------PMSVPR 112 (308)
T ss_dssp TEEEECC------CCSSCCBSCEEEEET-TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECC---------CCSSCC
T ss_pred CeEeECC------CCCcccccceEEEEC-CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECC---------CCCcCc
Confidence 3699986 689999999999886 699999998 55667899999999999999986 468899
Q ss_pred ceeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEE
Q 011542 78 AFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYV 157 (483)
Q Consensus 78 ~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~ 157 (483)
..|++++++++||++||..+...++++++||+.+++|+.+++ +|.+|..|+++++++ +||++||.++....+++++
T Consensus 113 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~ 188 (308)
T 1zgk_A 113 NRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP---MLTRRIGVGVAVLNR-LLYAVGGFDGTNRLNSAEC 188 (308)
T ss_dssp BTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETT-EEEEECCBCSSCBCCCEEE
T ss_pred cccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCC---CCccccceEEEEECC-EEEEEeCCCCCCcCceEEE
Confidence 999999999999999999887778999999999999999985 899999999999955 9999999988777999999
Q ss_pred EECCCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCee
Q 011542 158 LDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCG 237 (483)
Q Consensus 158 yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~ 237 (483)
||+.+++|+.++ ++|.+|.+|+++.++++|||+||..... .++.++.||+.+++|+.+. ++|.+|..
T Consensus 189 yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-------~~~~v~~yd~~~~~W~~~~---~~p~~r~~ 255 (308)
T 1zgk_A 189 YYPERNEWRMIT---AMNTIRSGAGVCVLHNCIYAAGGYDGQD-------QLNSVERYDVETETWTFVA---PMKHRRSA 255 (308)
T ss_dssp EETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSS-------BCCCEEEEETTTTEEEECC---CCSSCCBS
T ss_pred EeCCCCeEeeCC---CCCCccccceEEEECCEEEEEeCCCCCC-------ccceEEEEeCCCCcEEECC---CCCCCccc
Confidence 999999999998 8999999999999999999999987543 2577888899999999998 78999999
Q ss_pred eEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEE
Q 011542 238 HTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL 300 (483)
Q Consensus 238 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~ 300 (483)
|++++.+++||++||.+.. ...+++++||+.+++|+.++.+ |.+|..|+++++
T Consensus 256 ~~~~~~~~~i~v~GG~~~~-------~~~~~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~l 308 (308)
T 1zgk_A 256 LGITVHQGRIYVLGGYDGH-------TFLDSVECYDPDTDTWSEVTRM---TSGRSGVGVAVT 308 (308)
T ss_dssp CEEEEETTEEEEECCBCSS-------CBCCEEEEEETTTTEEEEEEEC---SSCCBSCEEEEC
T ss_pred eEEEEECCEEEEEcCcCCC-------cccceEEEEcCCCCEEeecCCC---CCCcccceeEeC
Confidence 9999999999999998753 3678999999999999999775 669999998864
No 7
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=1.5e-42 Score=339.04 Aligned_cols=256 Identities=18% Similarity=0.272 Sum_probs=229.6
Q ss_pred cceEEceeCCCCCCCCCCCcceeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeE
Q 011542 2 HYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHI 81 (483)
Q Consensus 2 ~~W~~~~~~~~~g~~p~~R~~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~ 81 (483)
-+|++++ ++|.+|.+|++++++ ++|||+||.+ ....+++++||+.+++|..++ ++|.+|..|+
T Consensus 34 ~~W~~~~------~~p~~r~~~~~~~~~-~~lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~---------~~p~~r~~~~ 96 (306)
T 3ii7_A 34 YSWTDIR------CPFEKRRDAACVFWD-NVVYILGGSQ-LFPIKRMDCYNVVKDSWYSKL---------GPPTPRDSLA 96 (306)
T ss_dssp TEEEECC------CCSCCCBSCEEEEET-TEEEEECCBS-SSBCCEEEEEETTTTEEEEEE---------CCSSCCBSCE
T ss_pred CCEecCC------CCCcccceeEEEEEC-CEEEEEeCCC-CCCcceEEEEeCCCCeEEECC---------CCCcccccee
Confidence 3699887 689999999999987 5899999998 677899999999999999987 4688999999
Q ss_pred EEEECCEEEEEcccc-CCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcC----CccEE
Q 011542 82 AVAIDCHMFIFGGRF-GSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKW----LSDVY 156 (483)
Q Consensus 82 ~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~----~~~v~ 156 (483)
+++++++||++||.+ +...++++++||+.+++|+.+++ +|.+|..|+++++++ +||++||...... .++++
T Consensus 97 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~ 172 (306)
T 3ii7_A 97 ACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS---MLTQRCSHGMVEANG-LIYVCGGSLGNNVSGRVLNSCE 172 (306)
T ss_dssp EEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETT-EEEEECCEESCTTTCEECCCEE
T ss_pred EEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC---CcCCcceeEEEEECC-EEEEECCCCCCCCcccccceEE
Confidence 999999999999998 56678999999999999999975 999999999999865 9999999876654 89999
Q ss_pred EEECCCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCe
Q 011542 157 VLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRC 236 (483)
Q Consensus 157 ~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~ 236 (483)
+||+.+++|+.++ ++|.+|.+|+++.++++|||+||..... .++.++.||+.+++|+.+. ++|.+|.
T Consensus 173 ~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~~-------~~~~~~~yd~~~~~W~~~~---~~p~~r~ 239 (306)
T 3ii7_A 173 VYDPATETWTELC---PMIEARKNHGLVFVKDKIFAVGGQNGLG-------GLDNVEYYDIKLNEWKMVS---PMPWKGV 239 (306)
T ss_dssp EEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEETTE-------EBCCEEEEETTTTEEEECC---CCSCCBS
T ss_pred EeCCCCCeEEECC---CccchhhcceEEEECCEEEEEeCCCCCC-------CCceEEEeeCCCCcEEECC---CCCCCcc
Confidence 9999999999998 8999999999999999999999976543 3577888999999999997 7899999
Q ss_pred eeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEEC
Q 011542 237 GHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLG 301 (483)
Q Consensus 237 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~ 301 (483)
.|++++.+++|||+||.+..+ ..+++++||+.+++|+.++.+ |.+|.+|+++++.
T Consensus 240 ~~~~~~~~~~i~v~GG~~~~~-------~~~~~~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~ 294 (306)
T 3ii7_A 240 TVKCAAVGSIVYVLAGFQGVG-------RLGHILEYNTETDKWVANSKV---RAFPVTSCLICVV 294 (306)
T ss_dssp CCEEEEETTEEEEEECBCSSS-------BCCEEEEEETTTTEEEEEEEE---ECCSCTTCEEEEE
T ss_pred ceeEEEECCEEEEEeCcCCCe-------eeeeEEEEcCCCCeEEeCCCc---ccccceeEEEEEC
Confidence 999999999999999987543 678999999999999999875 5689999988764
No 8
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=3.6e-42 Score=335.49 Aligned_cols=257 Identities=21% Similarity=0.323 Sum_probs=232.2
Q ss_pred cceEEceeCCCCCCCCCCCcceeEEEECCcEEEEEcccCCCccccceEEEEcCCCc---EEeeeecCCCCCCCCCCCCcc
Q 011542 2 HYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKL---WFQPECTGNGSNGQVGPGPRA 78 (483)
Q Consensus 2 ~~W~~~~~~~~~g~~p~~R~~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~---W~~~~~~~~~~~~~~~p~~R~ 78 (483)
-+|++++ .+|.+|.+|+++.++ ++||++||.++....+++++||+.+++ |..++ ++|.+|.
T Consensus 41 ~~W~~~~------~~p~~r~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~---------~~p~~r~ 104 (301)
T 2vpj_A 41 QEWSFLP------SITRKRRYVASVSLH-DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVA---------PMNVRRG 104 (301)
T ss_dssp TEEEECC------CCSSCCBSCEEEEET-TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEEC---------CCSSCCB
T ss_pred CeEEeCC------CCChhhccccEEEEC-CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECC---------CCCCCcc
Confidence 3699887 688999999999987 699999999877788999999999999 99986 4688999
Q ss_pred eeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEE
Q 011542 79 FHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVL 158 (483)
Q Consensus 79 ~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y 158 (483)
.|++++++++||++||..+...++++++||+.+++|+.+++ +|.+|..|+++++++ +||++||.++....+++++|
T Consensus 105 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~ 180 (301)
T 2vpj_A 105 LAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGD---MQTAREGAGLVVASG-VIYCLGGYDGLNILNSVEKY 180 (301)
T ss_dssp SCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE---CSSCCBSCEEEEETT-EEEEECCBCSSCBCCCEEEE
T ss_pred ceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCC---CCCCcccceEEEECC-EEEEECCCCCCcccceEEEE
Confidence 99999999999999999887778999999999999999985 899999999999855 99999999888789999999
Q ss_pred ECCCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeee
Q 011542 159 DTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGH 238 (483)
Q Consensus 159 d~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~ 238 (483)
|+.+++|+.++ ++|.+|.+|+++.++++|||+||..... .++.++.||+++++|+.+. .+|.+|..|
T Consensus 181 d~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~~-------~~~~v~~yd~~~~~W~~~~---~~p~~r~~~ 247 (301)
T 2vpj_A 181 DPHTGHWTNVT---PMATKRSGAGVALLNDHIYVVGGFDGTA-------HLSSVEAYNIRTDSWTTVT---SMTTPRCYV 247 (301)
T ss_dssp ETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCBCSSS-------BCCCEEEEETTTTEEEEEC---CCSSCCBSC
T ss_pred eCCCCcEEeCC---CCCcccccceEEEECCEEEEEeCCCCCc-------ccceEEEEeCCCCcEEECC---CCCCcccce
Confidence 99999999997 8999999999999999999999987653 2577888999999999997 789999999
Q ss_pred EEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEEC
Q 011542 239 TITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLG 301 (483)
Q Consensus 239 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~ 301 (483)
++++.+++||++||.+.. ...+++++||+++++|+.++.+ |.+|..|+++.++
T Consensus 248 ~~~~~~~~i~v~GG~~~~-------~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~ 300 (301)
T 2vpj_A 248 GATVLRGRLYAIAGYDGN-------SLLSSIECYDPIIDSWEVVTSM---GTQRCDAGVCVLR 300 (301)
T ss_dssp EEEEETTEEEEECCBCSS-------SBEEEEEEEETTTTEEEEEEEE---EEEEESCEEEEEE
T ss_pred eEEEECCEEEEEcCcCCC-------cccccEEEEcCCCCeEEEcCCC---CcccccceEEEeC
Confidence 999999999999998653 2568999999999999999875 6699999999874
No 9
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=2.2e-42 Score=345.35 Aligned_cols=287 Identities=18% Similarity=0.206 Sum_probs=226.1
Q ss_pred CCCCCCcceeEEEECCcEEEEEcccCCCccccceEEEEcC--CCcEEeeeecCCCCCCCCCC-CCcceeEEEEECCEEEE
Q 011542 15 TVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDID--NKLWFQPECTGNGSNGQVGP-GPRAFHIAVAIDCHMFI 91 (483)
Q Consensus 15 ~~p~~R~~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~~~~~~~~~~p-~~R~~h~~~~~~~~iyv 91 (483)
++|.+|.+|++++++ ++|||+||... +++++||+. +++|..++ ++| .+|.+|++++++++||+
T Consensus 5 ~lP~~r~~~~~~~~~-~~iyv~GG~~~----~~~~~~d~~~~~~~W~~~~---------~~p~~~R~~~~~~~~~~~lyv 70 (357)
T 2uvk_A 5 ETPVPFKSGTGAIDN-DTVYIGLGSAG----TAWYKLDTQAKDKKWTALA---------AFPGGPRDQATSAFIDGNLYV 70 (357)
T ss_dssp CCSSCCCSCEEEEET-TEEEEECGGGT----TCEEEEETTSSSCCEEECC---------CCTTCCCBSCEEEEETTEEEE
T ss_pred CCCccccceEEEEEC-CEEEEEeCcCC----CeEEEEccccCCCCeeECC---------CCCCCcCccceEEEECCEEEE
Confidence 689999999998886 69999999864 489999998 49999986 457 79999999999999999
Q ss_pred Eccc-c----CCCCCccEEEEECCCCeEEEeecCCCC-CCCCcccEEEEECCcEEEEEecCCCC----------------
Q 011542 92 FGGR-F----GSRRLGDFWVLDTDIWQWSELTSFGDL-PSPRDFAAASAIGNRKIVMYGGWDGK---------------- 149 (483)
Q Consensus 92 ~GG~-~----~~~~~~~~~~yd~~t~~W~~l~~~~~~-p~~r~~~~~~~~~~~~iyv~GG~~~~---------------- 149 (483)
|||. . ....++++++||+.+++|+++++ + |.+|..|+++++++ +||||||.+..
T Consensus 71 ~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~ 146 (357)
T 2uvk_A 71 FGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMS---HAPMGMAGHVTFVHNG-KAYVTGGVNQNIFNGYFEDLNEAGKDS 146 (357)
T ss_dssp ECCEEECTTSCEEECCCEEEEETTTTEEEECSC---CCSSCCSSEEEEEETT-EEEEEECCCHHHHHHHHHHHHHHTTCH
T ss_pred EcCCCCCCCccceeeccEEEEeCCCCcEEECCC---CCCcccccceEEEECC-EEEEEeCcCCCcCcccccchhhcCCcc
Confidence 9998 3 13457899999999999999986 4 49999999999755 99999998653
Q ss_pred ------------------cCCccEEEEECCCCceEEeccCCCCCCCC-cCceEEEeCCEEEEEccCCCCCCcccceeccc
Q 011542 150 ------------------KWLSDVYVLDTISLEWMQLPVTGSVPPPR-CGHTATMVEKRLLIYGGRGGGGPIMGDLWALK 210 (483)
Q Consensus 150 ------------------~~~~~v~~yd~~t~~W~~i~~~~~~p~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~ 210 (483)
..++++++||+.+++|+.+. ++|.+| .+|+++.++++|||+||....+.. .+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~------~~ 217 (357)
T 2uvk_A 147 TAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAG---ESPWYGTAGAAVVNKGDKTWLINGEAKPGLR------TD 217 (357)
T ss_dssp HHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEE---ECSSCCCBSCEEEEETTEEEEECCEEETTEE------CC
T ss_pred cchhhhhhhhccccccccCCcccEEEEeCCCCcEEECC---CCCCCCcccccEEEECCEEEEEeeecCCCcc------cC
Confidence 24689999999999999997 788765 459999999999999997654322 34
Q ss_pred ccccccC--CCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCC----------cccceeeCcEEEEEcCCCc
Q 011542 211 GLIEEEN--ETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWL----------SRYDIYYNDTIILDRLSAQ 278 (483)
Q Consensus 211 ~~~~yd~--~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~----------~~~~~~~~~v~~yd~~~~~ 278 (483)
.++.||+ ++++|+.+... +.|.+|.+|++++.+++|||+||.+..+.. .......+++++||+.+++
T Consensus 218 ~v~~~d~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~ 296 (357)
T 2uvk_A 218 AVFELDFTGNNLKWNKLAPV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK 296 (357)
T ss_dssp CEEEEECC---CEEEECCCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---
T ss_pred ceEEEEecCCCCcEEecCCC-CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc
Confidence 4555655 99999998732 234456788899999999999997543200 0001235789999999999
Q ss_pred eEEccCCCCCCCCCcceEEEEECCEEEEEccCCCCC-ccCcEEEEcCCCCcccceeecC
Q 011542 279 WKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGKS-TFGDIWWLVPEEDPIAKRYTES 336 (483)
Q Consensus 279 W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~~~-~~~d~w~l~~~~d~~~~~w~~~ 336 (483)
|+.++.+ |.+|..|+++.++++||||||.+... .++|+|.|.+. .++|...
T Consensus 297 W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~----~~~~~~~ 348 (357)
T 2uvk_A 297 WDKSGEL---SQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVK----DNKVTVQ 348 (357)
T ss_dssp CEEEEEC---SSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-----CCSCEEE
T ss_pred eeeCCCC---CCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEc----CcEeEee
Confidence 9999874 66899999999999999999987654 47899987766 5566655
No 10
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=1.2e-42 Score=341.47 Aligned_cols=270 Identities=20% Similarity=0.235 Sum_probs=229.9
Q ss_pred ceEEceeCCCCCCCCCCCcceeEEEECCcEEEEEcccC------CCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCC
Q 011542 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLV------DKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGP 76 (483)
Q Consensus 3 ~W~~~~~~~~~g~~p~~R~~h~~~~~~~~~l~v~GG~~------~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~ 76 (483)
+|+... .+.|.+|.+|++++++ ++|||+||.. .....+++++||+.+++|..++ ++|.+
T Consensus 24 ~W~~~~-----~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~---------~~p~~ 88 (315)
T 4asc_A 24 ECYCAS-----LSSQVPKNHVSLVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP---------PLPSP 88 (315)
T ss_dssp EEEEEE-----CCCCSCSSEEEEECTT-CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC---------CBSSC
T ss_pred eEecCC-----CCCCCCccceEEEEEC-CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC---------CCCcc
Confidence 688622 1346789999999876 6899999962 1234567999999999999986 46889
Q ss_pred cceeEEEEECCEEEEEcccc---CCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecC-CCCcCC
Q 011542 77 RAFHIAVAIDCHMFIFGGRF---GSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGW-DGKKWL 152 (483)
Q Consensus 77 R~~h~~~~~~~~iyv~GG~~---~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~-~~~~~~ 152 (483)
|.+|++++++++||++||.. +...++++++||+.+++|+++++ +|.+|..|+++++++ +|||+||. ......
T Consensus 89 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~ 164 (315)
T 4asc_A 89 RCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP---LPYVVYGHTVLSHMD-LVYVIGGKGSDRKCL 164 (315)
T ss_dssp EESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETT-EEEEECCBCTTSCBC
T ss_pred hhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC---CCCcccceeEEEECC-EEEEEeCCCCCCccc
Confidence 99999999999999999985 35678999999999999999985 999999999999866 99999998 555678
Q ss_pred ccEEEEECCCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCC
Q 011542 153 SDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAP 232 (483)
Q Consensus 153 ~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p 232 (483)
+++++||+.+++|+.++ ++|.+|..|+++.++++|||+||....+ .++.+++||+.+++|+.+. ++|
T Consensus 165 ~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-------~~~~~~~yd~~~~~W~~~~---~~p 231 (315)
T 4asc_A 165 NKMCVYDPKKFEWKELA---PMQTARSLFGATVHDGRIIVAAGVTDTG-------LTSSAEVYSITDNKWAPFE---AFP 231 (315)
T ss_dssp CCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEEEEECSSS-------EEEEEEEEETTTTEEEEEC---CCS
T ss_pred ceEEEEeCCCCeEEECC---CCCCchhceEEEEECCEEEEEeccCCCC-------ccceEEEEECCCCeEEECC---CCC
Confidence 99999999999999998 8999999999999999999999987654 3577888999999999998 789
Q ss_pred CCCeeeEEEEeCCEEEEEcCCCCCCC--CcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEcc
Q 011542 233 SSRCGHTITSGGHYLLLFGGHGTGGW--LSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGG 309 (483)
Q Consensus 233 ~~r~~~~~~~~~~~i~v~GG~~~~~~--~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG 309 (483)
.+|..|++++.+++||++||.+.... ........+++|+||+.+++|+.+ +|.+|..|++++++++||++..
T Consensus 232 ~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~-----~~~~r~~~~~~~~~~~l~v~~~ 305 (315)
T 4asc_A 232 QERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV-----LREIAYAAGATFLPVRLNVLRL 305 (315)
T ss_dssp SCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE-----ESCSSCCSSCEEEEEEECGGGS
T ss_pred CcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh-----ccCCcCccceEEeCCEEEEEEe
Confidence 99999999999999999999753100 001114678999999999999999 3458999999999999999865
No 11
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=1.3e-41 Score=334.09 Aligned_cols=261 Identities=20% Similarity=0.346 Sum_probs=223.0
Q ss_pred cEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEcccc----C--CCCCccE
Q 011542 31 SKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRF----G--SRRLGDF 104 (483)
Q Consensus 31 ~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~----~--~~~~~~~ 104 (483)
+.||++|| +++++||+.+++|.. +.. +.|.+|.+|++++++++||++||.. . ....+++
T Consensus 5 ~~l~~~GG-------~~~~~yd~~~~~W~~-~~~-------~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 69 (315)
T 4asc_A 5 DLIFMISE-------EGAVAYDPAANECYC-ASL-------SSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYF 69 (315)
T ss_dssp EEEEEEET-------TEEEEEETTTTEEEE-EEC-------CCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEE
T ss_pred eEEEEEcC-------CceEEECCCCCeEec-CCC-------CCCCCccceEEEEECCEEEEEcCcccCCCCCccccccce
Confidence 57999999 689999999999987 322 3477999999999999999999973 1 2234569
Q ss_pred EEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCC---CCcCCccEEEEECCCCceEEeccCCCCCCCCcCc
Q 011542 105 WVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWD---GKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGH 181 (483)
Q Consensus 105 ~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~---~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~ 181 (483)
++||+.+++|+.+++ +|.+|..|+++++++ +|||+||.+ +....+++++||+.+++|++++ ++|.+|.+|
T Consensus 70 ~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~ 142 (315)
T 4asc_A 70 LQFDHLDSEWLGMPP---LPSPRCLFGLGEALN-SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---PLPYVVYGH 142 (315)
T ss_dssp EEEETTTTEEEECCC---BSSCEESCEEEEETT-EEEEECCEESSTTCCBCCCEEEEETTTTEEEECC---CCSSCCBSC
T ss_pred EEecCCCCeEEECCC---CCcchhceeEEEECC-EEEEEeCCcCCCCCcccceEEEECCCCCcEeECC---CCCCcccce
Confidence 999999999999975 999999999999965 999999974 3567899999999999999998 899999999
Q ss_pred eEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcc
Q 011542 182 TATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSR 261 (483)
Q Consensus 182 ~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~ 261 (483)
+++.++++|||+||...... .++.+++||+.+++|+.+. ++|.+|..|++++.+++|||+||.+..+
T Consensus 143 ~~~~~~~~iyv~GG~~~~~~------~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~---- 209 (315)
T 4asc_A 143 TVLSHMDLVYVIGGKGSDRK------CLNKMCVYDPKKFEWKELA---PMQTARSLFGATVHDGRIIVAAGVTDTG---- 209 (315)
T ss_dssp EEEEETTEEEEECCBCTTSC------BCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEEEEECSSS----
T ss_pred eEEEECCEEEEEeCCCCCCc------ccceEEEEeCCCCeEEECC---CCCCchhceEEEEECCEEEEEeccCCCC----
Confidence 99999999999999854433 3466777899999999998 7899999999999999999999987643
Q ss_pred cceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEccCCCC---------CccCcEEEEcCCCCcccce
Q 011542 262 YDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGK---------STFGDIWWLVPEEDPIAKR 332 (483)
Q Consensus 262 ~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~~---------~~~~d~w~l~~~~d~~~~~ 332 (483)
..+++++||+.+++|+.++. .|.+|..|+++.++++|||+||.++. ..++++|.|+ +.+++
T Consensus 210 ---~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd----~~~~~ 279 (315)
T 4asc_A 210 ---LTSSAEVYSITDNKWAPFEA---FPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYN----EEEKK 279 (315)
T ss_dssp ---EEEEEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEE----TTTTE
T ss_pred ---ccceEEEEECCCCeEEECCC---CCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEec----CCCCh
Confidence 67899999999999999986 46799999999999999999998542 2456777655 55677
Q ss_pred eecC
Q 011542 333 YTES 336 (483)
Q Consensus 333 w~~~ 336 (483)
|+..
T Consensus 280 W~~~ 283 (315)
T 4asc_A 280 WEGV 283 (315)
T ss_dssp EEEE
T ss_pred hhhh
Confidence 8777
No 12
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=8.2e-42 Score=335.89 Aligned_cols=270 Identities=20% Similarity=0.254 Sum_probs=227.4
Q ss_pred ceEEceeCCCCCCCCCCCcceeEEEECCcEEEEEcccCC------CccccceEEEEcCCCcEEeeeecCCCCCCCCCCCC
Q 011542 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVD------KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGP 76 (483)
Q Consensus 3 ~W~~~~~~~~~g~~p~~R~~h~~~~~~~~~l~v~GG~~~------~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~ 76 (483)
+|.+... +.|.+|.+|+++.++ ++||++||... ....+++++||+.+++|..++ ++|.+
T Consensus 35 ~W~~~~~-----~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~---------~~p~~ 99 (318)
T 2woz_A 35 ECYLTAL-----AEQIPRNHSSIVTQQ-NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP---------PLPSA 99 (318)
T ss_dssp EEEEEEE-----CTTSCSSEEEEECSS-SCEEEEESSCC-------CCCBEEEEEETTTTEEEECS---------CBSSC
T ss_pred ceecccC-----CccCCccceEEEEEC-CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC---------CCCcc
Confidence 6887431 446789999988776 68999999631 123346999999999999986 46889
Q ss_pred cceeEEEEECCEEEEEcccc--CCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCC-CcCCc
Q 011542 77 RAFHIAVAIDCHMFIFGGRF--GSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDG-KKWLS 153 (483)
Q Consensus 77 R~~h~~~~~~~~iyv~GG~~--~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~-~~~~~ 153 (483)
|..|++++++++||++||.. +...++++++||+.+++|+++++ +|.+|..|+++++++ +|||+||... ....+
T Consensus 100 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~ 175 (318)
T 2woz_A 100 RCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN---LPIKVYGHNVISHNG-MIYCLGGKTDDKKCTN 175 (318)
T ss_dssp BCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC---CSSCEESCEEEEETT-EEEEECCEESSSCBCC
T ss_pred ccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC---CCCcccccEEEEECC-EEEEEcCCCCCCCccc
Confidence 99999999999999999986 35668899999999999999984 899999999999855 9999999853 45689
Q ss_pred cEEEEECCCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCC
Q 011542 154 DVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPS 233 (483)
Q Consensus 154 ~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~ 233 (483)
++++||+.+++|+.++ ++|.+|..|+++.++++|||+||..... .++.+++||+++++|+.+. ++|.
T Consensus 176 ~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-------~~~~~~~yd~~~~~W~~~~---~~p~ 242 (318)
T 2woz_A 176 RVFIYNPKKGDWKDLA---PMKTPRSMFGVAIHKGKIVIAGGVTEDG-------LSASVEAFDLKTNKWEVMT---EFPQ 242 (318)
T ss_dssp CEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEEEEEETTE-------EEEEEEEEETTTCCEEECC---CCSS
T ss_pred eEEEEcCCCCEEEECC---CCCCCcccceEEEECCEEEEEcCcCCCC-------ccceEEEEECCCCeEEECC---CCCC
Confidence 9999999999999998 8999999999999999999999986543 3577888999999999997 7899
Q ss_pred CCeeeEEEEeCCEEEEEcCCCCCCCCc--ccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEcc
Q 011542 234 SRCGHTITSGGHYLLLFGGHGTGGWLS--RYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGG 309 (483)
Q Consensus 234 ~r~~~~~~~~~~~i~v~GG~~~~~~~~--~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG 309 (483)
+|..|++++.+++||++||........ ......+++|+||+.+++|+.+ .|.+|+.|+++.++++|||+..
T Consensus 243 ~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~-----~~~~r~~~~~~~~~~~iyi~~~ 315 (318)
T 2woz_A 243 ERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM-----LKEIRYASGASCLATRLNLFKL 315 (318)
T ss_dssp CCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE-----ESCCGGGTTCEEEEEEEEGGGC
T ss_pred cccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh-----cccccccccceeeCCEEEEEEe
Confidence 999999999999999999986521000 0013578999999999999998 3558999999999999999853
No 13
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=6.9e-41 Score=329.29 Aligned_cols=271 Identities=19% Similarity=0.309 Sum_probs=228.4
Q ss_pred CCCCcceeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEcccc
Q 011542 17 PQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRF 96 (483)
Q Consensus 17 p~~R~~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~ 96 (483)
..+|.++... +.||++||. ++++||+.+++|...+ . +.|.+|..|++++++++||++||..
T Consensus 6 ~~~r~~~~~~----~~i~~~GG~-------~~~~yd~~~~~W~~~~-~-------~~~~~r~~~~~~~~~~~lyv~GG~~ 66 (318)
T 2woz_A 6 DIPRHGMFVK----DLILLVNDT-------AAVAYDPMENECYLTA-L-------AEQIPRNHSSIVTQQNQVYVVGGLY 66 (318)
T ss_dssp SSCCCCCSEE----EEEEEECSS-------EEEEEETTTTEEEEEE-E-------CTTSCSSEEEEECSSSCEEEEESSC
T ss_pred ccccccceec----chhhhcccc-------ceEEECCCCCceeccc-C-------CccCCccceEEEEECCEEEEECCcc
Confidence 3577776553 689999993 4899999999999843 2 2467899999999999999999963
Q ss_pred C------CCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCC--CCcCCccEEEEECCCCceEEe
Q 011542 97 G------SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWD--GKKWLSDVYVLDTISLEWMQL 168 (483)
Q Consensus 97 ~------~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~--~~~~~~~v~~yd~~t~~W~~i 168 (483)
. ....+++++||+.+++|.++++ +|.+|..|+++++++ +|||+||.. +....+++++||+.+++|+++
T Consensus 67 ~~~~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~ 142 (318)
T 2woz_A 67 VDEENKDQPLQSYFFQLDNVSSEWVGLPP---LPSARCLFGLGEVDD-KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV 142 (318)
T ss_dssp C-------CCCBEEEEEETTTTEEEECSC---BSSCBCSCEEEEETT-EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE
T ss_pred cCccccCCCccccEEEEeCCCCcEEECCC---CCccccccceEEECC-EEEEEcCccCCCCcccceEEEEeCCCCCEeEC
Confidence 1 1223459999999999999974 999999999999965 999999986 456789999999999999999
Q ss_pred ccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEE
Q 011542 169 PVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLL 248 (483)
Q Consensus 169 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~ 248 (483)
+ ++|.+|.+|+++.++++|||+||...... .++.++.||+.+++|+.+. ++|.+|..|++++.+++||
T Consensus 143 ~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~------~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iy 210 (318)
T 2woz_A 143 K---NLPIKVYGHNVISHNGMIYCLGGKTDDKK------CTNRVFIYNPKKGDWKDLA---PMKTPRSMFGVAIHKGKIV 210 (318)
T ss_dssp C---CCSSCEESCEEEEETTEEEEECCEESSSC------BCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEE
T ss_pred C---CCCCcccccEEEEECCEEEEEcCCCCCCC------ccceEEEEcCCCCEEEECC---CCCCCcccceEEEECCEEE
Confidence 8 89999999999999999999999854433 2466777899999999998 7899999999999999999
Q ss_pred EEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEccCCCC---------CccCcE
Q 011542 249 LFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDGK---------STFGDI 319 (483)
Q Consensus 249 v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~~---------~~~~d~ 319 (483)
|+||.... ...+++++||+.+++|+.++.+ |.+|..|+++.++++|||+||.+.. ..++++
T Consensus 211 v~GG~~~~-------~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v 280 (318)
T 2woz_A 211 IAGGVTED-------GLSASVEAFDLKTNKWEVMTEF---PQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDI 280 (318)
T ss_dssp EEEEEETT-------EEEEEEEEEETTTCCEEECCCC---SSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCE
T ss_pred EEcCcCCC-------CccceEEEEECCCCeEEECCCC---CCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeE
Confidence 99998753 3678999999999999999774 6689999999999999999998752 347888
Q ss_pred EEEcCCCCcccceeecC
Q 011542 320 WWLVPEEDPIAKRYTES 336 (483)
Q Consensus 320 w~l~~~~d~~~~~w~~~ 336 (483)
|.|++ .+++|+.+
T Consensus 281 ~~yd~----~~~~W~~~ 293 (318)
T 2woz_A 281 WKYED----DKKEWAGM 293 (318)
T ss_dssp EEEET----TTTEEEEE
T ss_pred EEEeC----CCCEehhh
Confidence 87654 46778766
No 14
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=1.1e-38 Score=344.85 Aligned_cols=285 Identities=18% Similarity=0.198 Sum_probs=230.1
Q ss_pred CCCCCCcceeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeee-ecCCCCCCCCCCCCcceeEEEEE--CCEEEE
Q 011542 15 TVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPE-CTGNGSNGQVGPGPRAFHIAVAI--DCHMFI 91 (483)
Q Consensus 15 ~~p~~R~~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv 91 (483)
..|.+|.+|+++ ++ ++|||+||.+. ...+++++||+.+++|..++ +.+ ...+|.+|.+|+++++ +++||+
T Consensus 384 ~~p~rr~g~~~~-~~-~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p----~~~~p~~R~~hs~~~~~~~~~lyv 456 (695)
T 2zwa_A 384 CPINRKFGDVDV-AG-NDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVS----SSEVPVARMCHTFTTISRNNQLLL 456 (695)
T ss_dssp CTTCCBSCEEEE-CS-SCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCC----CSCCCCCCBSCEEEEETTTTEEEE
T ss_pred CCCCCceeEEEE-EC-CEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCC----CCCCCccccceEEEEEccCCEEEE
Confidence 456678777655 55 68999999977 78899999999999999987 432 1247899999999999 999999
Q ss_pred EccccCCC-CCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEecc
Q 011542 92 FGGRFGSR-RLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPV 170 (483)
Q Consensus 92 ~GG~~~~~-~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~ 170 (483)
+||.+... .++++|+||+.+++|+.+++ +|.+|..|+++++.+++||||||.+... ++++||+.+++|+.+++
T Consensus 457 ~GG~~~~~~~~~dv~~yd~~t~~W~~~~~---~p~~R~~h~~~~~~~~~iyv~GG~~~~~---~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 457 IGGRKAPHQGLSDNWIFDMKTREWSMIKS---LSHTRFRHSACSLPDGNVLILGGVTEGP---AMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp ECCBSSTTCBCCCCEEEETTTTEEEECCC---CSBCCBSCEEEECTTSCEEEECCBCSSC---SEEEEETTTTEEEECCC
T ss_pred EcCCCCCCCccccEEEEeCCCCcEEECCC---CCCCcccceEEEEcCCEEEEECCCCCCC---CEEEEECCCCceEEccC
Confidence 99998744 78999999999999999974 9999999999997556999999987665 89999999999999997
Q ss_pred CCCCCCCCcCceEEEeC---CEEEEEccCCCCC-CcccceecccccccccCCCCC------eEEeccCCCCCCCCeeeEE
Q 011542 171 TGSVPPPRCGHTATMVE---KRLLIYGGRGGGG-PIMGDLWALKGLIEEENETPG------WTQLKLPGQAPSSRCGHTI 240 (483)
Q Consensus 171 ~~~~p~~r~~~~~~~~~---~~lyv~GG~~~~~-~~~~d~~~l~~~~~yd~~~~~------W~~~~~~g~~p~~r~~~~~ 240 (483)
.+.+|.+|++|+++.++ ++|||+||....+ . .++.+++||+.+++ |+.+.. .++.+|.+|++
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~------~~~~v~~yd~~~~~w~~~~~W~~~~~--~p~~~R~~~~~ 602 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTT------VSDKAIIFKYDAENATEPITVIKKLQ--HPLFQRYGSQI 602 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSC------BCCEEEEEEECTTCSSCCEEEEEEEE--CGGGCCBSCEE
T ss_pred CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCe------eeCcEEEEEccCCccccceEEEEcCC--CCCCCcccceE
Confidence 77799999999988876 8999999986543 2 34667788999999 888873 13689999999
Q ss_pred EEeC-CEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCC----CCCCCcceEEEEECC-EEEEEccCCCCC
Q 011542 241 TSGG-HYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNE----PPPARAYHSMTCLGS-LYLLFGGFDGKS 314 (483)
Q Consensus 241 ~~~~-~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~----~p~~R~~~~~~~~~~-~i~v~GG~~~~~ 314 (483)
++.+ ++|||+||.+..+. ....+++++||+.+++|+.++.... +++.+.+|+++.+++ +|||+||.....
T Consensus 603 ~~~~~~~iyv~GG~~~~~~----~~~~~~v~~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~cf 678 (695)
T 2zwa_A 603 KYITPRKLLIVGGTSPSGL----FDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATCY 678 (695)
T ss_dssp EEEETTEEEEECCBCSSCC----CCTTTSEEEEETTTTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCEEECT
T ss_pred EEeCCCEEEEECCccCCCC----CCCCCeEEEEECCCCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCCccCc
Confidence 9998 99999999865431 1357899999999999997543211 123678899998876 999999964332
Q ss_pred ----ccCcEEEEcC
Q 011542 315 ----TFGDIWWLVP 324 (483)
Q Consensus 315 ----~~~d~w~l~~ 324 (483)
.++++|.+++
T Consensus 679 sfGt~~n~i~~ldl 692 (695)
T 2zwa_A 679 GFGSVTNVGLKLIA 692 (695)
T ss_dssp TSCEEECCCEEEEE
T ss_pred CccccccceEEEEE
Confidence 3456776654
No 15
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=1.5e-36 Score=303.01 Aligned_cols=253 Identities=21% Similarity=0.270 Sum_probs=201.5
Q ss_pred cceEEceeCCCCCCCC-CCCcceeEEEECCcEEEEEccc-C----CCccccceEEEEcCCCcEEeeeecCCCCCCCCCCC
Q 011542 2 HYWVRASSSDFGGTVP-QPRSGHSAVNIGKSKVVVFGGL-V----DKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPG 75 (483)
Q Consensus 2 ~~W~~~~~~~~~g~~p-~~R~~h~~~~~~~~~l~v~GG~-~----~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~ 75 (483)
.+|++++ ++| .+|.+|++++++ ++|||+||. . ....++++++||+.+++|+.++.. .|.
T Consensus 43 ~~W~~~~------~~p~~~R~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--------~p~ 107 (357)
T 2uvk_A 43 KKWTALA------AFPGGPRDQATSAFID-GNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSH--------APM 107 (357)
T ss_dssp CCEEECC------CCTTCCCBSCEEEEET-TEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCC--------CSS
T ss_pred CCeeECC------CCCCCcCccceEEEEC-CEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCC--------CCc
Confidence 4699997 688 799999999997 699999998 3 235689999999999999998743 258
Q ss_pred CcceeEEEEECCEEEEEccccCC----------------------------------CCCccEEEEECCCCeEEEeecCC
Q 011542 76 PRAFHIAVAIDCHMFIFGGRFGS----------------------------------RRLGDFWVLDTDIWQWSELTSFG 121 (483)
Q Consensus 76 ~R~~h~~~~~~~~iyv~GG~~~~----------------------------------~~~~~~~~yd~~t~~W~~l~~~~ 121 (483)
+|.+|++++.+++||++||.+.. ..++++++||+.+++|+.+++
T Consensus 108 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~-- 185 (357)
T 2uvk_A 108 GMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE-- 185 (357)
T ss_dssp CCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEE--
T ss_pred ccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCC--
Confidence 99999999999999999998643 246899999999999999975
Q ss_pred CCCCCCcc-cEEEEECCcEEEEEecCCCC-cCCccEEEEEC--CCCceEEeccCCCCCC--CCcCceEEEeCCEEEEEcc
Q 011542 122 DLPSPRDF-AAASAIGNRKIVMYGGWDGK-KWLSDVYVLDT--ISLEWMQLPVTGSVPP--PRCGHTATMVEKRLLIYGG 195 (483)
Q Consensus 122 ~~p~~r~~-~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~--~t~~W~~i~~~~~~p~--~r~~~~~~~~~~~lyv~GG 195 (483)
+|.+|.. |+++++++ +||||||.... ...+++++||+ .+++|+.++ ++|. +|.+|+++.++++|||+||
T Consensus 186 -~p~~~~~~~~~~~~~~-~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~---~~~~~~~~~~~~~~~~~~~iyv~GG 260 (357)
T 2uvk_A 186 -SPWYGTAGAAVVNKGD-KTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLA---PVSSPDGVAGGFAGISNDSLIFAGG 260 (357)
T ss_dssp -CSSCCCBSCEEEEETT-EEEEECCEEETTEECCCEEEEECC---CEEEECC---CSSTTTCCBSCEEEEETTEEEEECC
T ss_pred -CCCCCcccccEEEECC-EEEEEeeecCCCcccCceEEEEecCCCCcEEecC---CCCCCcccccceEEEECCEEEEEcC
Confidence 7876555 88888865 99999997654 35788999986 999999997 5544 4668889999999999999
Q ss_pred CCCCCC--------c--ccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCccccee
Q 011542 196 RGGGGP--------I--MGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIY 265 (483)
Q Consensus 196 ~~~~~~--------~--~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~ 265 (483)
....+. . .+....++.+++||+++++|+.+. .+|.+|..|++++.+++||||||.+..+ ..
T Consensus 261 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~~------~~ 331 (357)
T 2uvk_A 261 AGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSG---ELSQGRAYGVSLPWNNSLLIIGGETAGG------KA 331 (357)
T ss_dssp EECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEE---ECSSCCBSSEEEEETTEEEEEEEECGGG------CE
T ss_pred ccccCCcccccccceeccccccceeeEEEEecCCCceeeCC---CCCCCcccceeEEeCCEEEEEeeeCCCC------CE
Confidence 754321 0 111123467889999999999997 7899999999999999999999987643 35
Q ss_pred eCcEEEEEcCCCceEEccCC
Q 011542 266 YNDTIILDRLSAQWKRLPIG 285 (483)
Q Consensus 266 ~~~v~~yd~~~~~W~~v~~~ 285 (483)
.+++++|++++++|......
T Consensus 332 ~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 332 VTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp EEEEEEEEC-CCSCEEEC--
T ss_pred eeeEEEEEEcCcEeEeeecc
Confidence 79999999999999987654
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=6e-34 Score=307.87 Aligned_cols=238 Identities=16% Similarity=0.196 Sum_probs=202.1
Q ss_pred CCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEee-c--CCCCCCCCcccEEEEEC-CcEEEEEecCCC
Q 011542 73 GPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELT-S--FGDLPSPRDFAAASAIG-NRKIVMYGGWDG 148 (483)
Q Consensus 73 ~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~-~--~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~ 148 (483)
.|.+|++|++ +++++||++||... ..++++++||+.+++|+.++ + .+.+|.+|.+|+++++. +++|||+||.+.
T Consensus 385 ~p~rr~g~~~-~~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~ 462 (695)
T 2zwa_A 385 PINRKFGDVD-VAGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKA 462 (695)
T ss_dssp TTCCBSCEEE-ECSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSS
T ss_pred CCCCceeEEE-EECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCC
Confidence 4666776554 48999999999987 77899999999999999998 4 35689999999999994 459999999987
Q ss_pred Cc-CCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEec
Q 011542 149 KK-WLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLK 226 (483)
Q Consensus 149 ~~-~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~ 226 (483)
.. .++++|+||+.+++|+.++ ++|.+|++|+++.+ +++|||+||..... .+++||+.+++|+.+.
T Consensus 463 ~~~~~~dv~~yd~~t~~W~~~~---~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----------~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 463 PHQGLSDNWIFDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEGP----------AMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTCBCCCCEEEETTTTEEEECC---CCSBCCBSCEEEECTTSCEEEECCBCSSC----------SEEEEETTTTEEEECC
T ss_pred CCCccccEEEEeCCCCcEEECC---CCCCCcccceEEEEcCCEEEEECCCCCCC----------CEEEEECCCCceEEcc
Confidence 54 7899999999999999998 89999999999997 99999999986542 5778899999999999
Q ss_pred cCCCCCCCCeeeEEEEeC---CEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCc------eEEccCCCCCCCCCcceEE
Q 011542 227 LPGQAPSSRCGHTITSGG---HYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ------WKRLPIGNEPPPARAYHSM 297 (483)
Q Consensus 227 ~~g~~p~~r~~~~~~~~~---~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~------W~~v~~~~~~p~~R~~~~~ 297 (483)
..+.+|.+|.+|++++++ ++|||+||...++ ....+++|+||+.+++ |+.+..+ ++.+|.+|++
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~-----~~~~~~v~~yd~~~~~w~~~~~W~~~~~~--p~~~R~~~~~ 602 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQ-----TTVSDKAIIFKYDAENATEPITVIKKLQH--PLFQRYGSQI 602 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTS-----SCBCCEEEEEEECTTCSSCCEEEEEEEEC--GGGCCBSCEE
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCC-----CeeeCcEEEEEccCCccccceEEEEcCCC--CCCCcccceE
Confidence 777799999999977766 8999999986543 2467999999999999 8988774 4678999999
Q ss_pred EEEC-CEEEEEccCCCCC---ccCcEEEEcCCCCcccceeecC
Q 011542 298 TCLG-SLYLLFGGFDGKS---TFGDIWWLVPEEDPIAKRYTES 336 (483)
Q Consensus 298 ~~~~-~~i~v~GG~~~~~---~~~d~w~l~~~~d~~~~~w~~~ 336 (483)
++++ ++|||+||.+... ..+++|.|++ .+++|+..
T Consensus 603 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~----~t~~W~~~ 641 (695)
T 2zwa_A 603 KYITPRKLLIVGGTSPSGLFDRTNSIISLDP----LSETLTSI 641 (695)
T ss_dssp EEEETTEEEEECCBCSSCCCCTTTSEEEEET----TTTEEEEC
T ss_pred EEeCCCEEEEECCccCCCCCCCCCeEEEEEC----CCCeEEEe
Confidence 9999 9999999987654 5788886554 46677744
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=100.00 E-value=4.5e-32 Score=292.31 Aligned_cols=277 Identities=16% Similarity=0.157 Sum_probs=209.3
Q ss_pred ceEEceeCCCCCCCCCCCcceeEEEEC-CcEEEEEcccCCCc------cccceEEEEcCCCcEEeeeecCCCCCCCCCCC
Q 011542 3 YWVRASSSDFGGTVPQPRSGHSAVNIG-KSKVVVFGGLVDKR------FLSDVVVYDIDNKLWFQPECTGNGSNGQVGPG 75 (483)
Q Consensus 3 ~W~~~~~~~~~g~~p~~R~~h~~~~~~-~~~l~v~GG~~~~~------~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~ 75 (483)
+|+.+.+ .||.+|.++++. +++||++||.+... ..+++++||+.+++|+.++.. |.
T Consensus 177 ~W~~~~~--------~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~---------~~ 239 (656)
T 1k3i_A 177 RWGPTID--------LPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT---------VT 239 (656)
T ss_dssp EEEEEEE--------CSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE---------EC
T ss_pred eeeeecc--------CCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc---------CC
Confidence 6887763 345677777774 68999999986432 235799999999999998743 44
Q ss_pred Ccc--eeEEEE-ECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEec-CCCCcC
Q 011542 76 PRA--FHIAVA-IDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGG-WDGKKW 151 (483)
Q Consensus 76 ~R~--~h~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG-~~~~~~ 151 (483)
+|. ++++++ .+++||++||.... ++++||+.+++|.++++ +|.+|..|+++++.+++|||+|| .++...
T Consensus 240 ~~~~~~~~~~~~~~g~lyv~GG~~~~----~v~~yd~~t~~W~~~~~---~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~ 312 (656)
T 1k3i_A 240 KHDMFCPGISMDGNGQIVVTGGNDAK----KTSLYDSSSDSWIPGPD---MQVARGYQSSATMSDGRVFTIGGSWSGGVF 312 (656)
T ss_dssp SCCCSSCEEEECTTSCEEEECSSSTT----CEEEEEGGGTEEEECCC---CSSCCSSCEEEECTTSCEEEECCCCCSSSC
T ss_pred CCCCccccccCCCCCCEEEeCCCCCC----ceEEecCcCCceeECCC---CCccccccceEEecCCeEEEEeCcccCCcc
Confidence 554 444444 58999999997653 79999999999999974 99999999999985669999999 556667
Q ss_pred CccEEEEECCCCceEEeccCC--CCCCC----------------------------------------------------
Q 011542 152 LSDVYVLDTISLEWMQLPVTG--SVPPP---------------------------------------------------- 177 (483)
Q Consensus 152 ~~~v~~yd~~t~~W~~i~~~~--~~p~~---------------------------------------------------- 177 (483)
.+++++||+.+++|+.++..+ +++..
T Consensus 313 ~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~ 392 (656)
T 1k3i_A 313 EKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNR 392 (656)
T ss_dssp CCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETT
T ss_pred cccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccccc
Confidence 899999999999999973211 12211
Q ss_pred -----CcCceEEE---eCCEEEEEccCCCCC--CcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEe-CCE
Q 011542 178 -----RCGHTATM---VEKRLLIYGGRGGGG--PIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSG-GHY 246 (483)
Q Consensus 178 -----r~~~~~~~---~~~~lyv~GG~~~~~--~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~-~~~ 246 (483)
+..+++++ .+++|||+||..... ...++ ...+++||+.+++|+.+. .+.+|.+|..|++++. +++
T Consensus 393 ~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~---~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~ 468 (656)
T 1k3i_A 393 GVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTN---AHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGS 468 (656)
T ss_dssp EECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCC---EEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSC
T ss_pred ccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCc---ceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCC
Confidence 22344443 489999999975321 11111 236788999999999886 2378999999998887 999
Q ss_pred EEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEE--CCEEEEEccCC
Q 011542 247 LLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL--GSLYLLFGGFD 311 (483)
Q Consensus 247 i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~--~~~i~v~GG~~ 311 (483)
|||+||....... ......+++++||+.+++|+.++.+ |.+|.+|+++++ +++|||+||..
T Consensus 469 i~v~GG~~~~~~~-~~~~~~~~v~~ydp~t~~W~~~~~~---~~~R~~hs~a~ll~dg~v~v~GG~~ 531 (656)
T 1k3i_A 469 TFITGGQRRGIPF-EDSTPVFTPEIYVPEQDTFYKQNPN---SIVRVYHSISLLLPDGRVFNGGGGL 531 (656)
T ss_dssp EEEECCBSBCCTT-CCCSBCCCCEEEEGGGTEEEECCCC---SSCCCTTEEEEECTTSCEEEEECCC
T ss_pred EEEECCcccCcCc-CCCCcccceEEEcCCCCceeecCCC---CCccccccHhhcCCCcEEEecCCCC
Confidence 9999997632100 0124678999999999999998764 669999998888 99999999963
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.96 E-value=8.1e-29 Score=266.91 Aligned_cols=263 Identities=16% Similarity=0.103 Sum_probs=194.9
Q ss_pred eEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCC------CCccEEEEECCCCeEEEeec
Q 011542 48 VVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSR------RLGDFWVLDTDIWQWSELTS 119 (483)
Q Consensus 48 ~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~------~~~~~~~yd~~t~~W~~l~~ 119 (483)
+..||+.+++|..++ |.||..|+++++ +++||++||..... ..+++++||+.+++|+.++.
T Consensus 168 ~~~~dp~~~~W~~~~-----------~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~ 236 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTI-----------DLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV 236 (656)
T ss_dssp CCCCCTTSCEEEEEE-----------ECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE
T ss_pred cccCCCCCCeeeeec-----------cCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc
Confidence 556888899999886 334456666666 89999999986532 24579999999999999875
Q ss_pred CCCCCCCCcccE--EEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe-CCEEEEEccC
Q 011542 120 FGDLPSPRDFAA--ASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGR 196 (483)
Q Consensus 120 ~~~~p~~r~~~~--~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~-~~~lyv~GG~ 196 (483)
+|.+|..++ ++++.+++||++||.... ++++||+.+++|++++ +||.+|..|+++.+ +++|||+||.
T Consensus 237 ---~~~~~~~~~~~~~~~~~g~lyv~GG~~~~----~v~~yd~~t~~W~~~~---~~~~~R~~~s~~~~~dg~iyv~GG~ 306 (656)
T 1k3i_A 237 ---TVTKHDMFCPGISMDGNGQIVVTGGNDAK----KTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGS 306 (656)
T ss_dssp ---EECSCCCSSCEEEECTTSCEEEECSSSTT----CEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCC
T ss_pred ---cCCCCCCccccccCCCCCCEEEeCCCCCC----ceEEecCcCCceeECC---CCCccccccceEEecCCeEEEEeCc
Confidence 777776554 555567799999997653 7999999999999998 89999999999999 9999999995
Q ss_pred CCCCCcccceecccccccccCCCCCeEEeccCC--CCCC-----------------------------------------
Q 011542 197 GGGGPIMGDLWALKGLIEEENETPGWTQLKLPG--QAPS----------------------------------------- 233 (483)
Q Consensus 197 ~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g--~~p~----------------------------------------- 233 (483)
..... .++.+++||+.+++|+.+...+ +++.
T Consensus 307 ~~~~~------~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~ 380 (656)
T 1k3i_A 307 WSGGV------FEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG 380 (656)
T ss_dssp CCSSS------CCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred ccCCc------ccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcc
Confidence 43322 3467788899999999873110 1111
Q ss_pred ----------------CCeeeEEEE---eCCEEEEEcCCCCCCCCcccceeeC---cEEEEEcCCCceEEccCCCCCCCC
Q 011542 234 ----------------SRCGHTITS---GGHYLLLFGGHGTGGWLSRYDIYYN---DTIILDRLSAQWKRLPIGNEPPPA 291 (483)
Q Consensus 234 ----------------~r~~~~~~~---~~~~i~v~GG~~~~~~~~~~~~~~~---~v~~yd~~~~~W~~v~~~~~~p~~ 291 (483)
++..+++++ .+++||++||...... ....+ ++++||+.+++|..+. ....|.+
T Consensus 381 w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~----~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~ 455 (656)
T 1k3i_A 381 DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD----SDATTNAHIITLGEPGTSPNTVFA-SNGLYFA 455 (656)
T ss_dssp EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS----SBCCCCEEEEECCSTTSCCEEEEC-TTCCSSC
T ss_pred eeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC----CCcCCcceEEEcCCCCCCCeeEEc-cCCCCCC
Confidence 122334443 5899999999753110 11233 7899999999999986 1224779
Q ss_pred CcceEEEEE-CCEEEEEccCCC------CCccCcEEEEcCCCCcccceeecCCCCCCCCCCc
Q 011542 292 RAYHSMTCL-GSLYLLFGGFDG------KSTFGDIWWLVPEEDPIAKRYTESPPKVLPENKD 346 (483)
Q Consensus 292 R~~~~~~~~-~~~i~v~GG~~~------~~~~~d~w~l~~~~d~~~~~w~~~~~~~~~~~~~ 346 (483)
|..|+++.+ +++|||+||.+. ...+++++ .||+.+++|+..++.+.++...
T Consensus 456 R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~----~ydp~t~~W~~~~~~~~~R~~h 513 (656)
T 1k3i_A 456 RTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPE----IYVPEQDTFYKQNPNSIVRVYH 513 (656)
T ss_dssp CBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCE----EEEGGGTEEEECCCCSSCCCTT
T ss_pred cccCCeEECCCCCEEEECCcccCcCcCCCCcccceE----EEcCCCCceeecCCCCCccccc
Confidence 999999988 999999999753 23456655 4667789999988777776554
No 19
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.74 E-value=0.011 Score=54.32 Aligned_cols=190 Identities=13% Similarity=0.038 Sum_probs=116.7
Q ss_pred cceeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEE
Q 011542 77 RAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVY 156 (483)
Q Consensus 77 R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~ 156 (483)
-+-+.....++.+|.-.|..+. +.+.++|+.+++=..-.. +|..-++.+++..++ +||+.... .+.++
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~---S~v~~vD~~tgkv~~~~~---l~~~~fgeGi~~~~~-~ly~ltw~-----~~~v~ 88 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGR---SSVRKVDLETGRILQRAE---VPPPYFGAGIVAWRD-RLIQLTWR-----NHEGF 88 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTS---CEEEEEETTTCCEEEEEE---CCTTCCEEEEEEETT-EEEEEESS-----SSEEE
T ss_pred cccccEEEECCEEEEECCCCCC---ceEEEEECCCCCEEEEEe---CCCCcceeEEEEeCC-EEEEEEee-----CCEEE
Confidence 3455677788999999886553 358899999987655442 555556666666655 99998643 46799
Q ss_pred EEECCCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEE-eccCCCCCCC-
Q 011542 157 VLDTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQ-LKLPGQAPSS- 234 (483)
Q Consensus 157 ~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~-~~~~g~~p~~- 234 (483)
+||..|.+-..- .+.+..+.+++..+++||+.-|. +.+..+|+++.+-.. +.+. ..+.+
T Consensus 89 v~D~~tl~~~~t-----i~~~~~Gwglt~dg~~L~vSdgs-------------~~l~~iDp~t~~~~~~I~V~-~~g~~~ 149 (243)
T 3mbr_X 89 VYDLATLTPRAR-----FRYPGEGWALTSDDSHLYMSDGT-------------AVIRKLDPDTLQQVGSIKVT-AGGRPL 149 (243)
T ss_dssp EEETTTTEEEEE-----EECSSCCCEEEECSSCEEEECSS-------------SEEEEECTTTCCEEEEEECE-ETTEEC
T ss_pred EEECCcCcEEEE-----EeCCCCceEEeeCCCEEEEECCC-------------CeEEEEeCCCCeEEEEEEEc-cCCccc
Confidence 999988765432 22233566777667889997652 445566998876543 2221 11222
Q ss_pred CeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEE---ccCCCC------CCCCCcceEEEEE--CCE
Q 011542 235 RCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKR---LPIGNE------PPPARAYHSMTCL--GSL 303 (483)
Q Consensus 235 r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~---v~~~~~------~p~~R~~~~~~~~--~~~ 303 (483)
+.-.-+...+++||+--- ..++|.+.|+.+.+-.. ++.... .+..-.-.+.+.. +++
T Consensus 150 ~~lNeLe~~~G~lyanvw------------~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 217 (243)
T 3mbr_X 150 DNLNELEWVNGELLANVW------------LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR 217 (243)
T ss_dssp CCEEEEEEETTEEEEEET------------TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTE
T ss_pred ccceeeEEeCCEEEEEEC------------CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCE
Confidence 111234456888886332 24689999999886543 222110 0111122345554 478
Q ss_pred EEEEcc
Q 011542 304 YLLFGG 309 (483)
Q Consensus 304 i~v~GG 309 (483)
+||.|-
T Consensus 218 lfVTGK 223 (243)
T 3mbr_X 218 LFVTGK 223 (243)
T ss_dssp EEEEET
T ss_pred EEEECC
Confidence 988873
No 20
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.63 E-value=0.042 Score=52.74 Aligned_cols=231 Identities=10% Similarity=0.015 Sum_probs=128.7
Q ss_pred ccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEE-EeecCCCC
Q 011542 45 LSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWS-ELTSFGDL 123 (483)
Q Consensus 45 ~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~-~l~~~~~~ 123 (483)
.+.+-+||+.+++....-.... ...+.....+.++..++++|+.... .+.+.++|+.+.+-. .++. .
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~----n~~~lg~~~~~i~~~~~~lyv~~~~-----~~~v~viD~~t~~~~~~i~~---~ 83 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRA----NGFKLGDVAQSMVIRDGIGWIVVNN-----SHVIFAIDINTFKEVGRITG---F 83 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHH----HSSCCBSCEEEEEEETTEEEEEEGG-----GTEEEEEETTTCCEEEEEEC---C
T ss_pred CceEEEEECCCCEEhhhhHhhh----cCcccCccceEEEEECCEEEEEEcC-----CCEEEEEECcccEEEEEcCC---C
Confidence 4678999999998765211000 0113334456677789999998753 246899999988763 3431 2
Q ss_pred CCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEE-eccCCCCC-CCCcCceEEEeCCEEEEEccCCCCCC
Q 011542 124 PSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQ-LPVTGSVP-PPRCGHTATMVEKRLLIYGGRGGGGP 201 (483)
Q Consensus 124 p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~-i~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~ 201 (483)
..-+.++...++++|+.... .+.+.++|+.+++-.. ++. +... ....-+.++..++++||..-..
T Consensus 84 ---~~p~~i~~~~~g~lyv~~~~-----~~~v~~iD~~t~~~~~~i~~-g~~~~~~~~p~~i~~~~~~lyv~~~~~---- 150 (328)
T 3dsm_A 84 ---TSPRYIHFLSDEKAYVTQIW-----DYRIFIINPKTYEITGYIEC-PDMDMESGSTEQMVQYGKYVYVNCWSY---- 150 (328)
T ss_dssp ---SSEEEEEEEETTEEEEEEBS-----CSEEEEEETTTTEEEEEEEC-TTCCTTTCBCCCEEEETTEEEEEECTT----
T ss_pred ---CCCcEEEEeCCCeEEEEECC-----CCeEEEEECCCCeEEEEEEc-CCccccCCCcceEEEECCEEEEEcCCC----
Confidence 22234444345699998743 4679999999987653 321 1200 0002234445788999985210
Q ss_pred cccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceE
Q 011542 202 IMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWK 280 (483)
Q Consensus 202 ~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 280 (483)
-+.+.++|+.+.+....-..+..| +.+++ -++++|+.......... .....+.++++|+.+.+..
T Consensus 151 -------~~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~--~~~~~~~v~~id~~t~~v~ 216 (328)
T 3dsm_A 151 -------QNRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSP--YGYEAPSLYRIDAETFTVE 216 (328)
T ss_dssp -------CCEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCS--SCBCCCEEEEEETTTTEEE
T ss_pred -------CCEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCc--cccCCceEEEEECCCCeEE
Confidence 145667799887765433222222 23333 45788876532211100 0011367999999988765
Q ss_pred EccCCCCCCCCCcceEEEEE--CCEEEEEccCCCCCccCcEEEEcCC
Q 011542 281 RLPIGNEPPPARAYHSMTCL--GSLYLLFGGFDGKSTFGDIWWLVPE 325 (483)
Q Consensus 281 ~v~~~~~~p~~R~~~~~~~~--~~~i~v~GG~~~~~~~~d~w~l~~~ 325 (483)
..-.. |.......++.. ++.+|+..+ .++.++..
T Consensus 217 ~~~~~---~~g~~p~~la~~~d~~~lyv~~~--------~v~~~d~~ 252 (328)
T 3dsm_A 217 KQFKF---KLGDWPSEVQLNGTRDTLYWINN--------DIWRMPVE 252 (328)
T ss_dssp EEEEC---CTTCCCEEEEECTTSCEEEEESS--------SEEEEETT
T ss_pred EEEec---CCCCCceeEEEecCCCEEEEEcc--------EEEEEECC
Confidence 32221 112223445554 567888643 56666554
No 21
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.62 E-value=0.014 Score=56.25 Aligned_cols=207 Identities=6% Similarity=-0.133 Sum_probs=113.8
Q ss_pred eeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCc
Q 011542 23 HSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLG 102 (483)
Q Consensus 23 h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~ 102 (483)
+.+++..++++|+.... .+.+.++|+.+.+-...-..+.. ..... .-+.++..++++|+..- ..-+
T Consensus 87 ~~i~~~~~g~lyv~~~~-----~~~v~~iD~~t~~~~~~i~~g~~----~~~~~-~p~~i~~~~~~lyv~~~----~~~~ 152 (328)
T 3dsm_A 87 RYIHFLSDEKAYVTQIW-----DYRIFIINPKTYEITGYIECPDM----DMESG-STEQMVQYGKYVYVNCW----SYQN 152 (328)
T ss_dssp EEEEEEETTEEEEEEBS-----CSEEEEEETTTTEEEEEEECTTC----CTTTC-BCCCEEEETTEEEEEEC----TTCC
T ss_pred cEEEEeCCCeEEEEECC-----CCeEEEEECCCCeEEEEEEcCCc----cccCC-CcceEEEECCEEEEEcC----CCCC
Confidence 34444355789987743 25689999998875432211110 00000 11234447889999842 0124
Q ss_pred cEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCc-----CCccEEEEECCCCceEEeccCCCCCCC
Q 011542 103 DFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK-----WLSDVYVLDTISLEWMQLPVTGSVPPP 177 (483)
Q Consensus 103 ~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~-----~~~~v~~yd~~t~~W~~i~~~~~~p~~ 177 (483)
.+.++|+.+++....-..+..| +.++.-.++++|+........ ..+.++++|+.+++....- ..+..
T Consensus 153 ~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~---~~~~g 224 (328)
T 3dsm_A 153 RILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF---KFKLG 224 (328)
T ss_dssp EEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE---ECCTT
T ss_pred EEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEE---ecCCC
Confidence 6999999998865543322222 334444567888875322111 1367999999998876432 22222
Q ss_pred CcCceEEEe--CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCC-CCeeeEEEE--eCCEEEEEcC
Q 011542 178 RCGHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPS-SRCGHTITS--GGHYLLLFGG 252 (483)
Q Consensus 178 r~~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~-~r~~~~~~~--~~~~i~v~GG 252 (483)
..-..+++. ++.||+..+ .+..+|+++.+..... ..+. ...-.++++ .++.||+...
T Consensus 225 ~~p~~la~~~d~~~lyv~~~---------------~v~~~d~~t~~~~~~~---~~~~~~~~p~gi~vdp~~g~lyva~~ 286 (328)
T 3dsm_A 225 DWPSEVQLNGTRDTLYWINN---------------DIWRMPVEADRVPVRP---FLEFRDTKYYGLTVNPNNGEVYVADA 286 (328)
T ss_dssp CCCEEEEECTTSCEEEEESS---------------SEEEEETTCSSCCSSC---SBCCCSSCEEEEEECTTTCCEEEEEC
T ss_pred CCceeEEEecCCCEEEEEcc---------------EEEEEECCCCceeeee---eecCCCCceEEEEEcCCCCeEEEEcc
Confidence 223445555 568888643 2334587776643111 1111 233345555 4678999863
Q ss_pred CCCCCCCcccceeeCcEEEEEcCCC
Q 011542 253 HGTGGWLSRYDIYYNDTIILDRLSA 277 (483)
Q Consensus 253 ~~~~~~~~~~~~~~~~v~~yd~~~~ 277 (483)
.+.. ..+.|.+||+...
T Consensus 287 ~~y~--------~~~~V~v~d~~g~ 303 (328)
T 3dsm_A 287 IDYQ--------QQGIVYRYSPQGK 303 (328)
T ss_dssp TTSS--------SEEEEEEECTTCC
T ss_pred cccc--------cCCEEEEECCCCC
Confidence 2110 2467999998733
No 22
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.42 E-value=0.033 Score=51.57 Aligned_cols=188 Identities=11% Similarity=-0.048 Sum_probs=111.8
Q ss_pred eeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEE
Q 011542 79 FHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVL 158 (483)
Q Consensus 79 ~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y 158 (483)
.......++.||+-.|..+. +.+.++|+++++=..--+ ++..-+..+++..++ +||+.... .+.+++|
T Consensus 45 tqGL~~~~~~LyestG~~g~---S~v~~vD~~Tgkv~~~~~---l~~~~FgeGit~~g~-~ly~ltw~-----~~~v~v~ 112 (262)
T 3nol_A 45 TEGFFYRNGYFYESTGLNGR---SSIRKVDIESGKTLQQIE---LGKRYFGEGISDWKD-KIVGLTWK-----NGLGFVW 112 (262)
T ss_dssp EEEEEEETTEEEEEEEETTE---EEEEEECTTTCCEEEEEE---CCTTCCEEEEEEETT-EEEEEESS-----SSEEEEE
T ss_pred cceEEEECCEEEEECCCCCC---ceEEEEECCCCcEEEEEe---cCCccceeEEEEeCC-EEEEEEee-----CCEEEEE
Confidence 34555568899999886543 358899999987654432 444444455566655 99998653 4679999
Q ss_pred ECCCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEE-eccC-CCCCCCCe
Q 011542 159 DTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQ-LKLP-GQAPSSRC 236 (483)
Q Consensus 159 d~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~-~~~~-g~~p~~r~ 236 (483)
|+.|.+-..- .+.+-.+.+++..+++||+.-|. +.+..+|+++.+-.. +... ...|...-
T Consensus 113 D~~t~~~~~t-----i~~~~eG~glt~dg~~L~~SdGs-------------~~i~~iDp~T~~v~~~I~V~~~g~~~~~l 174 (262)
T 3nol_A 113 NIRNLRQVRS-----FNYDGEGWGLTHNDQYLIMSDGT-------------PVLRFLDPESLTPVRTITVTAHGEELPEL 174 (262)
T ss_dssp ETTTCCEEEE-----EECSSCCCCEEECSSCEEECCSS-------------SEEEEECTTTCSEEEEEECEETTEECCCE
T ss_pred ECccCcEEEE-----EECCCCceEEecCCCEEEEECCC-------------CeEEEEcCCCCeEEEEEEeccCCcccccc
Confidence 9998775432 22223566777667788887552 345556998866543 3321 01122211
Q ss_pred eeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCC-CC-------CCCCcceEEEEE--CCEEEE
Q 011542 237 GHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGN-EP-------PPARAYHSMTCL--GSLYLL 306 (483)
Q Consensus 237 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~-~~-------p~~R~~~~~~~~--~~~i~v 306 (483)
. -+...+++||+--- ..++|.+.|+.+.+-...-... .. +..-.-.+.+.. ++++||
T Consensus 175 N-ELe~~~G~lyan~w------------~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfV 241 (262)
T 3nol_A 175 N-ELEWVDGEIFANVW------------QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFV 241 (262)
T ss_dssp E-EEEEETTEEEEEET------------TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEE
T ss_pred c-eeEEECCEEEEEEc------------cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEE
Confidence 1 23445888886321 2478999999988754422221 11 111222455554 478888
Q ss_pred Ecc
Q 011542 307 FGG 309 (483)
Q Consensus 307 ~GG 309 (483)
.|-
T Consensus 242 TGK 244 (262)
T 3nol_A 242 TGK 244 (262)
T ss_dssp EET
T ss_pred ECC
Confidence 873
No 23
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.37 E-value=0.012 Score=64.05 Aligned_cols=227 Identities=9% Similarity=0.031 Sum_probs=125.1
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~y 107 (483)
.++.|++ |.. ..-+++||+.++++...... ..+ ...-.+++.. ++.|++- .. +-+++|
T Consensus 416 ~~g~lWi-gt~-----~~Gl~~~~~~~~~~~~~~~~-------~~~-~~~v~~i~~d~~g~lwig-t~------~Gl~~~ 474 (781)
T 3v9f_A 416 SEGNLWF-GTY-----LGNISYYNTRLKKFQIIELE-------KNE-LLDVRVFYEDKNKKIWIG-TH------AGVFVI 474 (781)
T ss_dssp TTSCEEE-EET-----TEEEEEECSSSCEEEECCST-------TTC-CCCEEEEEECTTSEEEEE-ET------TEEEEE
T ss_pred CCCCEEE-Eec-----cCCEEEEcCCCCcEEEeccC-------CCC-CCeEEEEEECCCCCEEEE-EC------CceEEE
Confidence 4566666 221 13478899999988776421 011 1222334444 4577764 21 248999
Q ss_pred ECCCCeEEEeecCCCCCC-CCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEE-
Q 011542 108 DTDIWQWSELTSFGDLPS-PRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATM- 185 (483)
Q Consensus 108 d~~t~~W~~l~~~~~~p~-~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~- 185 (483)
|+.+++|.........+. ...-.+++...++.|++.. . ...+++||+.+++++.......++.... .+++.
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-----~~Gl~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d 547 (781)
T 3v9f_A 475 DLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-F-----GGGVGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRS 547 (781)
T ss_dssp ESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-S-----SSCEEEECTTCCEEEEECTTTTCSCSCE-EEEEEC
T ss_pred eCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-c-----CCCEEEEeCCCCeEEEccCCCCCCCCee-EEEEEC
Confidence 999998877653211111 1122233334456777743 2 1348999999999998863222322211 12222
Q ss_pred eCCEEEEEccCCCCCCcccceeccccc-ccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCCCCCCCCcccc
Q 011542 186 VEKRLLIYGGRGGGGPIMGDLWALKGL-IEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLSRYD 263 (483)
Q Consensus 186 ~~~~lyv~GG~~~~~~~~~d~~~l~~~-~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~ 263 (483)
.++.||+... +.+ ..||+.+.+++.......+|.... .+++. .++.|++.+.
T Consensus 548 ~~g~lWi~T~--------------~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~----------- 601 (781)
T 3v9f_A 548 SKGQMWLATG--------------EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN----------- 601 (781)
T ss_dssp TTSCEEEEET--------------TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS-----------
T ss_pred CCCCEEEEEC--------------CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC-----------
Confidence 1567777432 223 567888888887754323444333 34444 4567887542
Q ss_pred eeeCcEEEEEcCCCceEEccCCCCCCCCCcce-EEEEECCEEEEEccCCC
Q 011542 264 IYYNDTIILDRLSAQWKRLPIGNEPPPARAYH-SMTCLGSLYLLFGGFDG 312 (483)
Q Consensus 264 ~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~-~~~~~~~~i~v~GG~~~ 312 (483)
+.+.+||+.+.++.........+...+.. +++...+.-+.|||.+|
T Consensus 602 ---~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~G 648 (781)
T 3v9f_A 602 ---TGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSING 648 (781)
T ss_dssp ---SCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEETTE
T ss_pred ---CceEEEECCCCceEEecccCCccccccccCceEECCCCEEEEECCCc
Confidence 23888999999888765433234444433 33333344455677665
No 24
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.29 E-value=0.058 Score=49.43 Aligned_cols=187 Identities=16% Similarity=0.061 Sum_probs=111.3
Q ss_pred eeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCc
Q 011542 23 HSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLG 102 (483)
Q Consensus 23 h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~ 102 (483)
+.....+ +.+|+-.|..+. +.+.++|+.+++=..-- ++|..-++..++..+++||+.... .+
T Consensus 24 qGL~~~~-~~LyestG~~g~---S~v~~vD~~tgkv~~~~---------~l~~~~fgeGi~~~~~~ly~ltw~-----~~ 85 (243)
T 3mbr_X 24 EGLFYLR-GHLYESTGETGR---SSVRKVDLETGRILQRA---------EVPPPYFGAGIVAWRDRLIQLTWR-----NH 85 (243)
T ss_dssp EEEEEET-TEEEEEECCTTS---CEEEEEETTTCCEEEEE---------ECCTTCCEEEEEEETTEEEEEESS-----SS
T ss_pred ccEEEEC-CEEEEECCCCCC---ceEEEEECCCCCEEEEE---------eCCCCcceeEEEEeCCEEEEEEee-----CC
Confidence 3444444 799999887543 57899999998765533 234455677888899999998543 34
Q ss_pred cEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEE-eccCCCCCCCC-cC
Q 011542 103 DFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQ-LPVTGSVPPPR-CG 180 (483)
Q Consensus 103 ~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~-i~~~~~~p~~r-~~ 180 (483)
.+++||+.+.+-..- .+.+..+.+++.- ++++|+.=| .+.++.+|+.|.+-.. +.+. ..+.+. .-
T Consensus 86 ~v~v~D~~tl~~~~t-----i~~~~~Gwglt~d-g~~L~vSdg------s~~l~~iDp~t~~~~~~I~V~-~~g~~~~~l 152 (243)
T 3mbr_X 86 EGFVYDLATLTPRAR-----FRYPGEGWALTSD-DSHLYMSDG------TAVIRKLDPDTLQQVGSIKVT-AGGRPLDNL 152 (243)
T ss_dssp EEEEEETTTTEEEEE-----EECSSCCCEEEEC-SSCEEEECS------SSEEEEECTTTCCEEEEEECE-ETTEECCCE
T ss_pred EEEEEECCcCcEEEE-----EeCCCCceEEeeC-CCEEEEECC------CCeEEEEeCCCCeEEEEEEEc-cCCcccccc
Confidence 699999998764332 2222345555544 347888643 4579999999976543 3221 222221 11
Q ss_pred ceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEe-ccCCCC--------CCCCeeeEEEE--eCCEEEE
Q 011542 181 HTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQL-KLPGQA--------PSSRCGHTITS--GGHYLLL 249 (483)
Q Consensus 181 ~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~-~~~g~~--------p~~r~~~~~~~--~~~~i~v 249 (483)
-.+...+++||+--- .-+.+.+.|+.+.+-... ...+-. |..-.-.+.+. .++++||
T Consensus 153 NeLe~~~G~lyanvw------------~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfV 220 (243)
T 3mbr_X 153 NELEWVNGELLANVW------------LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFV 220 (243)
T ss_dssp EEEEEETTEEEEEET------------TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEE
T ss_pred eeeEEeCCEEEEEEC------------CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEE
Confidence 234455888886432 225566669988875433 221111 11122234444 3678888
Q ss_pred EcC
Q 011542 250 FGG 252 (483)
Q Consensus 250 ~GG 252 (483)
.|=
T Consensus 221 TGK 223 (243)
T 3mbr_X 221 TGK 223 (243)
T ss_dssp EET
T ss_pred ECC
Confidence 773
No 25
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.28 E-value=0.15 Score=49.49 Aligned_cols=209 Identities=16% Similarity=0.153 Sum_probs=112.0
Q ss_pred EEECCcEEEEEcccCCCccccceEEEEcCCCc--EEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCcc
Q 011542 26 VNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGD 103 (483)
Q Consensus 26 ~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~ 103 (483)
..+.++.||+.... ..+++||+.+++ |..... . ....+.++.++.||+... -..
T Consensus 99 ~~~~~~~v~v~~~~------g~l~a~d~~tG~~~W~~~~~-----------~-~~~~~p~~~~~~v~v~~~------~g~ 154 (376)
T 3q7m_A 99 VTVSGGHVYIGSEK------AQVYALNTSDGTVAWQTKVA-----------G-EALSRPVVSDGLVLIHTS------NGQ 154 (376)
T ss_dssp EEEETTEEEEEETT------SEEEEEETTTCCEEEEEECS-----------S-CCCSCCEEETTEEEEECT------TSE
T ss_pred ceEeCCEEEEEcCC------CEEEEEECCCCCEEEEEeCC-----------C-ceEcCCEEECCEEEEEcC------CCe
Confidence 33455788885431 468999998774 765321 0 112223455788887542 135
Q ss_pred EEEEECCCCe--EEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc--eEEeccCCCCCCCC-
Q 011542 104 FWVLDTDIWQ--WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPPPR- 178 (483)
Q Consensus 104 ~~~yd~~t~~--W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~i~~~~~~p~~r- 178 (483)
++.||+.+++ |..-... .....+...+.++. ++.+|+ |.. ...++.||+.+++ |+.-. ..+...
T Consensus 155 l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~-~~~v~~-g~~-----~g~l~~~d~~tG~~~w~~~~---~~~~~~~ 223 (376)
T 3q7m_A 155 LQALNEADGAVKWTVNLDM-PSLSLRGESAPTTA-FGAAVV-GGD-----NGRVSAVLMEQGQMIWQQRI---SQATGST 223 (376)
T ss_dssp EEEEETTTCCEEEEEECCC------CCCCCCEEE-TTEEEE-CCT-----TTEEEEEETTTCCEEEEEEC---CC-----
T ss_pred EEEEECCCCcEEEEEeCCC-CceeecCCCCcEEE-CCEEEE-EcC-----CCEEEEEECCCCcEEEEEec---ccCCCCc
Confidence 8999998775 8764321 01011111222333 447766 322 2358999988664 76543 111111
Q ss_pred -------cCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCC--CeEEeccCCCCCCCCeeeEEEEeCCEEEE
Q 011542 179 -------CGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETP--GWTQLKLPGQAPSSRCGHTITSGGHYLLL 249 (483)
Q Consensus 179 -------~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~--~W~~~~~~g~~p~~r~~~~~~~~~~~i~v 249 (483)
.....+..++.+|+.+.. ..+..+|+.+. .|+... +. ..+.++.++.+|+
T Consensus 224 ~~~~~~~~~~~p~~~~~~v~~~~~~-------------g~l~~~d~~tG~~~w~~~~-----~~---~~~~~~~~~~l~~ 282 (376)
T 3q7m_A 224 EIDRLSDVDTTPVVVNGVVFALAYN-------------GNLTALDLRSGQIMWKREL-----GS---VNDFIVDGNRIYL 282 (376)
T ss_dssp ------CCCCCCEEETTEEEEECTT-------------SCEEEEETTTCCEEEEECC-----CC---EEEEEEETTEEEE
T ss_pred ccccccccCCCcEEECCEEEEEecC-------------cEEEEEECCCCcEEeeccC-----CC---CCCceEECCEEEE
Confidence 223344568888886521 22344577655 465432 11 2345567888888
Q ss_pred EcCCCCCCCCcccceeeCcEEEEEcCCCc--eEEccCCCCCCCCCcceEEEEECCEEEEEc
Q 011542 250 FGGHGTGGWLSRYDIYYNDTIILDRLSAQ--WKRLPIGNEPPPARAYHSMTCLGSLYLLFG 308 (483)
Q Consensus 250 ~GG~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~v~~~~~~p~~R~~~~~~~~~~~i~v~G 308 (483)
.... ..++.||+.+.+ |+.-... .+...+.+..++.||+..
T Consensus 283 ~~~~-------------g~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~~~l~v~~ 325 (376)
T 3q7m_A 283 VDQN-------------DRVMALTIDGGVTLWTQSDLL-----HRLLTSPVLYNGNLVVGD 325 (376)
T ss_dssp EETT-------------CCEEEEETTTCCEEEEECTTT-----TSCCCCCEEETTEEEEEC
T ss_pred EcCC-------------CeEEEEECCCCcEEEeecccC-----CCcccCCEEECCEEEEEe
Confidence 6531 358999987654 7653111 223334455678877764
No 26
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.14 E-value=0.17 Score=47.42 Aligned_cols=225 Identities=7% Similarity=-0.005 Sum_probs=108.8
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWV 106 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~ 106 (483)
..++..++.|+.++ .+.++|..+.+....-.. . ...-.+++.. ++++++.|+.++ .+.+
T Consensus 32 s~~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~---------h-~~~v~~~~~~~~~~~l~s~~~d~-----~i~v 91 (312)
T 4ery_A 32 SPNGEWLASSSADK-----LIKIWGAYDGKFEKTISG---------H-KLGISDVAWSSDSNLLVSASDDK-----TLKI 91 (312)
T ss_dssp CTTSSEEEEEETTS-----CEEEEETTTCCEEEEECC---------C-SSCEEEEEECTTSSEEEEEETTS-----EEEE
T ss_pred CCCCCEEEEeeCCC-----eEEEEeCCCcccchhhcc---------C-CCceEEEEEcCCCCEEEEECCCC-----EEEE
Confidence 35566777777543 477889888776543211 1 1112222222 556777776543 4788
Q ss_pred EECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe
Q 011542 107 LDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV 186 (483)
Q Consensus 107 yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~ 186 (483)
||..+++-...-. . ....-.+++...++.+++.|+.++ .+.+||+.+.+-...-. ....+ -.++...
T Consensus 92 wd~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~--~~~~~--v~~~~~~ 158 (312)
T 4ery_A 92 WDVSSGKCLKTLK---G-HSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDVKTGKCLKTLP--AHSDP--VSAVHFN 158 (312)
T ss_dssp EETTTCCEEEEEE---C-CSSCEEEEEECSSSSEEEEEETTS-----CEEEEETTTCCEEEEEC--CCSSC--EEEEEEC
T ss_pred EECCCCcEEEEEc---C-CCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCEEEEEec--CCCCc--EEEEEEc
Confidence 9988775433211 1 111112223334556777787644 47889988776433220 11111 1122222
Q ss_pred -CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCccccee
Q 011542 187 -EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIY 265 (483)
Q Consensus 187 -~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~ 265 (483)
++.+++.|+.. ..+..||+.+.+-..... ..........+...++..++.|+.+
T Consensus 159 ~~~~~l~~~~~d------------~~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d----------- 213 (312)
T 4ery_A 159 RDGSLIVSSSYD------------GLCRIWDTASGQCLKTLI--DDDNPPVSFVKFSPNGKYILAATLD----------- 213 (312)
T ss_dssp TTSSEEEEEETT------------SCEEEEETTTCCEEEEEC--CSSCCCEEEEEECTTSSEEEEEETT-----------
T ss_pred CCCCEEEEEeCC------------CcEEEEECCCCceeeEEe--ccCCCceEEEEECCCCCEEEEEcCC-----------
Confidence 45666777653 234456776655432221 1111111112222344555555533
Q ss_pred eCcEEEEEcCCCceEE-ccCCCCCCCCCcceEEEE-ECCEEEEEccCCCC
Q 011542 266 YNDTIILDRLSAQWKR-LPIGNEPPPARAYHSMTC-LGSLYLLFGGFDGK 313 (483)
Q Consensus 266 ~~~v~~yd~~~~~W~~-v~~~~~~p~~R~~~~~~~-~~~~i~v~GG~~~~ 313 (483)
+.+.+||+.+..-.. +..... .......... .++.+++.|+.++.
T Consensus 214 -~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~sg~~dg~ 260 (312)
T 4ery_A 214 -NTLKLWDYSKGKCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNL 260 (312)
T ss_dssp -TEEEEEETTTTEEEEEECSSCC--SSSCCCEEEECSSSCEEEECCTTSC
T ss_pred -CeEEEEECCCCcEEEEEEecCC--ceEEEEEEEEeCCCcEEEEECCCCE
Confidence 358888987665332 222111 1111112222 35677788876653
No 27
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.06 E-value=0.041 Score=59.78 Aligned_cols=231 Identities=8% Similarity=0.050 Sum_probs=123.7
Q ss_pred eEEEECCcE-EEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCC
Q 011542 24 SAVNIGKSK-VVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRL 101 (483)
Q Consensus 24 ~~~~~~~~~-l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~ 101 (483)
+++...++. |+| |..+ .-+.+||+.++++....... +..+.. .-.+++.. ++.|++-. .
T Consensus 410 ~i~~d~~g~~lWi-gt~~-----~Gl~~~d~~~~~~~~~~~~~-----~~l~~~-~v~~i~~d~~g~lwigt-~------ 470 (795)
T 4a2l_A 410 AVYVDEKKSLVYI-GTHA-----GGLSILHRNSGQVENFNQRN-----SQLVNE-NVYAILPDGEGNLWLGT-L------ 470 (795)
T ss_dssp EEEEETTTTEEEE-EETT-----TEEEEEETTTCCEEEECTTT-----SCCSCS-CEEEEEECSSSCEEEEE-S------
T ss_pred EEEEcCCCCEEEE-EeCc-----CceeEEeCCCCcEEEeecCC-----CCcCCC-eeEEEEECCCCCEEEEe-c------
Confidence 333345566 665 3221 23789999999887765321 011211 22333333 45777643 2
Q ss_pred ccEEEEECCCCeEEEeecCC---CCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccC---CCCC
Q 011542 102 GDFWVLDTDIWQWSELTSFG---DLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVT---GSVP 175 (483)
Q Consensus 102 ~~~~~yd~~t~~W~~l~~~~---~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~---~~~p 175 (483)
+.+++||+.+++|....... .++. ..-.+++...++.|++... ..+++||+.++++ ..... ..++
T Consensus 471 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~d~~g~lWigt~-------~Gl~~~~~~~~~~-~~~~~~~~~~l~ 541 (795)
T 4a2l_A 471 SALVRFNPEQRSFTTIEKEKDGTPVVS-KQITTLFRDSHKRLWIGGE-------EGLSVFKQEGLDI-QKASILPVSNVT 541 (795)
T ss_dssp SCEEEEETTTTEEEECCBCTTCCBCCC-CCEEEEEECTTCCEEEEES-------SCEEEEEEETTEE-EECCCSCSCGGG
T ss_pred CceeEEeCCCCeEEEccccccccccCC-ceEEEEEECCCCCEEEEeC-------CceEEEeCCCCeE-EEecCCCCCCCC
Confidence 23899999999998875421 1111 1122333334567877542 3589999999988 54311 0111
Q ss_pred CCCcCceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCC
Q 011542 176 PPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGH 253 (483)
Q Consensus 176 ~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~ 253 (483)
.. .-.+++.. ++.|++... ..+..||+.+.+++.......+|.... .+++. .++.|++.+.
T Consensus 542 ~~-~i~~i~~d~~g~lWigT~--------------~Gl~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lWi~t~- 604 (795)
T 4a2l_A 542 KL-FTNCIYEASNGIIWVGTR--------------EGFYCFNEKDKQIKRYNTTNGLPNNVV-YGILEDSFGRLWLSTN- 604 (795)
T ss_dssp GS-CEEEEEECTTSCEEEEES--------------SCEEEEETTTTEEEEECGGGTCSCSCE-EEEEECTTSCEEEEET-
T ss_pred CC-eeEEEEECCCCCEEEEeC--------------CCceeECCCCCcEEEeCCCCCCchhhe-EEEEECCCCCEEEEcC-
Confidence 11 11122221 567887432 224557888888887653323444333 33443 3567887552
Q ss_pred CCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcc-eEEEEECCEEEEEccCCC
Q 011542 254 GTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAY-HSMTCLGSLYLLFGGFDG 312 (483)
Q Consensus 254 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~-~~~~~~~~~i~v~GG~~~ 312 (483)
+.+.+||+.+.++.........+...+. .+++...+.-+.|||.+|
T Consensus 605 -------------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~G 651 (795)
T 4a2l_A 605 -------------RGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGING 651 (795)
T ss_dssp -------------TEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEETTE
T ss_pred -------------CceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEEecCCc
Confidence 3478899999988876543323434443 233444334455677665
No 28
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.03 E-value=0.056 Score=50.07 Aligned_cols=182 Identities=14% Similarity=0.022 Sum_probs=106.2
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~y 107 (483)
+.++.+|+-.|..+. +.+.++|+.+++=..--. ++..-++..++..+++||+.... -+.+++|
T Consensus 50 ~~~~~LyestG~~g~---S~v~~vD~~Tgkv~~~~~---------l~~~~FgeGit~~g~~ly~ltw~-----~~~v~v~ 112 (262)
T 3nol_A 50 YRNGYFYESTGLNGR---SSIRKVDIESGKTLQQIE---------LGKRYFGEGISDWKDKIVGLTWK-----NGLGFVW 112 (262)
T ss_dssp EETTEEEEEEEETTE---EEEEEECTTTCCEEEEEE---------CCTTCCEEEEEEETTEEEEEESS-----SSEEEEE
T ss_pred EECCEEEEECCCCCC---ceEEEEECCCCcEEEEEe---------cCCccceeEEEEeCCEEEEEEee-----CCEEEEE
Confidence 336799998886542 568899999987544331 23334566778889999998543 2469999
Q ss_pred ECCCCeEEE-eecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEE-eccCCCCCCCCcC-ceEE
Q 011542 108 DTDIWQWSE-LTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQ-LPVTGSVPPPRCG-HTAT 184 (483)
Q Consensus 108 d~~t~~W~~-l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~-i~~~~~~p~~r~~-~~~~ 184 (483)
|+.+.+-.. ++ .+-.+.+++.- ++.+|+.-| .+.++.+|+.|.+-.. +.+. ....+... -.+.
T Consensus 113 D~~t~~~~~ti~------~~~eG~glt~d-g~~L~~SdG------s~~i~~iDp~T~~v~~~I~V~-~~g~~~~~lNELe 178 (262)
T 3nol_A 113 NIRNLRQVRSFN------YDGEGWGLTHN-DQYLIMSDG------TPVLRFLDPESLTPVRTITVT-AHGEELPELNELE 178 (262)
T ss_dssp ETTTCCEEEEEE------CSSCCCCEEEC-SSCEEECCS------SSEEEEECTTTCSEEEEEECE-ETTEECCCEEEEE
T ss_pred ECccCcEEEEEE------CCCCceEEecC-CCEEEEECC------CCeEEEEcCCCCeEEEEEEec-cCCccccccceeE
Confidence 998876432 33 22244455543 347887543 4679999999876443 3321 11112111 1244
Q ss_pred EeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEe-ccCCCC-------CCCCeeeEEEE--eCCEEEEEcC
Q 011542 185 MVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQL-KLPGQA-------PSSRCGHTITS--GGHYLLLFGG 252 (483)
Q Consensus 185 ~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~-~~~g~~-------p~~r~~~~~~~--~~~~i~v~GG 252 (483)
..+++||+--- .-+.+.+.|+.+.+-... ...+-. +..-.-.+.+. .++++||.|-
T Consensus 179 ~~~G~lyan~w------------~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 179 WVDGEIFANVW------------QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EETTEEEEEET------------TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EECCEEEEEEc------------cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 55888886321 125566669988876433 222111 11122234554 4578888774
No 29
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.02 E-value=0.1 Score=51.21 Aligned_cols=222 Identities=15% Similarity=0.056 Sum_probs=106.2
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLD 108 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd 108 (483)
.++.+++.|+.+ ..+.+||+.+.+-...-. .... ...++..++.+++.|+.++ .+.++|
T Consensus 144 ~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~---------~~~~--~v~~~~~~~~~l~~~~~dg-----~i~i~d 202 (401)
T 4aez_A 144 HDGSFLSVGLGN-----GLVDIYDVESQTKLRTMA---------GHQA--RVGCLSWNRHVLSSGSRSG-----AIHHHD 202 (401)
T ss_dssp TTSSEEEEEETT-----SCEEEEETTTCCEEEEEC---------CCSS--CEEEEEEETTEEEEEETTS-----EEEEEE
T ss_pred CCCCEEEEECCC-----CeEEEEECcCCeEEEEec---------CCCC--ceEEEEECCCEEEEEcCCC-----CEEEEe
Confidence 344455555432 357788887765433221 1111 1222333556667776543 578889
Q ss_pred CCCCe--EEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe
Q 011542 109 TDIWQ--WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV 186 (483)
Q Consensus 109 ~~t~~--W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~ 186 (483)
..+.. -..+.. ....-.+++...++.+++.|+.++ .+.+||..+.+-...- . .....-.++...
T Consensus 203 ~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~~---~-~~~~~v~~~~~~ 268 (401)
T 4aez_A 203 VRIANHQIGTLQG-----HSSEVCGLAWRSDGLQLASGGNDN-----VVQIWDARSSIPKFTK---T-NHNAAVKAVAWC 268 (401)
T ss_dssp TTSSSCEEEEEEC-----CSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTCSSEEEEE---C-CCSSCCCEEEEC
T ss_pred cccCcceeeEEcC-----CCCCeeEEEEcCCCCEEEEEeCCC-----eEEEccCCCCCccEEe---c-CCcceEEEEEEC
Confidence 87432 122221 111122333334567788887643 5888998876543321 1 111112233343
Q ss_pred --CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE--eCCEEEEEcCCCCCCCCccc
Q 011542 187 --EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS--GGHYLLLFGGHGTGGWLSRY 262 (483)
Q Consensus 187 --~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~ 262 (483)
++.+++.||...+ ..+..||..+..-...- ..... -.+++. .+..+++.+|..+
T Consensus 269 p~~~~ll~~~~gs~d----------~~i~i~d~~~~~~~~~~---~~~~~--v~~~~~s~~~~~l~~~~g~~d------- 326 (401)
T 4aez_A 269 PWQSNLLATGGGTMD----------KQIHFWNAATGARVNTV---DAGSQ--VTSLIWSPHSKEIMSTHGFPD------- 326 (401)
T ss_dssp TTSTTEEEEECCTTT----------CEEEEEETTTCCEEEEE---ECSSC--EEEEEECSSSSEEEEEECTTT-------
T ss_pred CCCCCEEEEecCCCC----------CEEEEEECCCCCEEEEE---eCCCc--EEEEEECCCCCeEEEEeecCC-------
Confidence 3467777652222 33455677665543322 11111 112222 3445555545433
Q ss_pred ceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEccCCC
Q 011542 263 DIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDG 312 (483)
Q Consensus 263 ~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~ 312 (483)
+.+.+||..+.....+..... ...+....+..-++.+++.||.++
T Consensus 327 ----g~i~v~~~~~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~s~~~dg 371 (401)
T 4aez_A 327 ----NNLSIWSYSSSGLTKQVDIPA-HDTRVLYSALSPDGRILSTAASDE 371 (401)
T ss_dssp ----CEEEEEEEETTEEEEEEEEEC-CSSCCCEEEECTTSSEEEEECTTS
T ss_pred ----CcEEEEecCCccceeEEEecC-CCCCEEEEEECCCCCEEEEEeCCC
Confidence 458888888776655432110 112222222223567777777665
No 30
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.95 E-value=0.24 Score=46.05 Aligned_cols=200 Identities=8% Similarity=-0.065 Sum_probs=114.5
Q ss_pred eeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCc
Q 011542 23 HSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLG 102 (483)
Q Consensus 23 h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~ 102 (483)
|.+....++.+|+..|..+ .+.+.++|+.+++=...-. .+....+..++..+++||+..-. .+
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~i~---------l~~~~fgeGi~~~g~~lyv~t~~-----~~ 86 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENIHK---------MDDSYFGEGLTLLNEKLYQVVWL-----KN 86 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEEEE---------CCTTCCEEEEEEETTEEEEEETT-----CS
T ss_pred ccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEEEe---------cCCCcceEEEEEeCCEEEEEEec-----CC
Confidence 6666666689999877422 2679999999987544321 22333456677789999998532 34
Q ss_pred cEEEEECCCCeEE-EeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEE-eccCCCCCCCC-c
Q 011542 103 DFWVLDTDIWQWS-ELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQ-LPVTGSVPPPR-C 179 (483)
Q Consensus 103 ~~~~yd~~t~~W~-~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~-i~~~~~~p~~r-~ 179 (483)
.+++||+.+.+=. .++. + +|. +.+++. .++++|+.-| .+.++.+|+.|.+=.. +.+. ..+.+. .
T Consensus 87 ~v~viD~~t~~v~~~i~~-g-~~~---g~glt~-Dg~~l~vs~g------s~~l~viD~~t~~v~~~I~Vg-~~~~p~~~ 153 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTH-Q-MKD---GWGLAT-DGKILYGSDG------TSILYEIDPHTFKLIKKHNVK-YNGHRVIR 153 (266)
T ss_dssp EEEEEETTTTEEEEEEEC-C-SSS---CCEEEE-CSSSEEEECS------SSEEEEECTTTCCEEEEEECE-ETTEECCC
T ss_pred EEEEEECCCCcEEEEEEC-C-CCC---eEEEEE-CCCEEEEECC------CCeEEEEECCCCcEEEEEEEC-CCCccccc
Confidence 6999999987532 2331 1 122 233333 3447888643 5679999999876433 3321 112221 1
Q ss_pred CceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEe-ccCCC--------CCCCCeeeEEEE--eCCEEE
Q 011542 180 GHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQL-KLPGQ--------APSSRCGHTITS--GGHYLL 248 (483)
Q Consensus 180 ~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~-~~~g~--------~p~~r~~~~~~~--~~~~i~ 248 (483)
-..+...++++|+--.. -+.+.+.|+.+.+-... ...+. .+..-.-.++++ .++++|
T Consensus 154 ~nele~~dg~lyvn~~~------------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lf 221 (266)
T 2iwa_A 154 LNELEYINGEVWANIWQ------------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIF 221 (266)
T ss_dssp EEEEEEETTEEEEEETT------------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEE
T ss_pred ceeEEEECCEEEEecCC------------CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEE
Confidence 12334447888875321 14455568888765332 21110 111112234444 456899
Q ss_pred EEcCCCCCCCCcccceeeCcEEEEEcCC
Q 011542 249 LFGGHGTGGWLSRYDIYYNDTIILDRLS 276 (483)
Q Consensus 249 v~GG~~~~~~~~~~~~~~~~v~~yd~~~ 276 (483)
|.|+.. +++++.++..
T Consensus 222 VTgk~~------------~~v~~i~l~~ 237 (266)
T 2iwa_A 222 VTGKLW------------PKLFEIKLHL 237 (266)
T ss_dssp EEETTC------------SEEEEEEEEE
T ss_pred EECCCC------------CeEEEEEEec
Confidence 988743 5577777644
No 31
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.94 E-value=0.059 Score=49.95 Aligned_cols=157 Identities=10% Similarity=-0.039 Sum_probs=96.0
Q ss_pred eeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEE
Q 011542 79 FHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVL 158 (483)
Q Consensus 79 ~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y 158 (483)
.......++.||+..|..+. +.++|+++++=..-- ++..-+..+++..+ ++||+.... .+.+++|
T Consensus 57 tqGL~~~~~~Ly~stG~~g~-----v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g-~~Ly~ltw~-----~~~v~V~ 121 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGHQGT-----LRQLSLESAQPVWME----RLGNIFAEGLASDG-ERLYQLTWT-----EGLLFTW 121 (268)
T ss_dssp EEEEEEETTEEEEEETTTTE-----EEECCSSCSSCSEEE----ECTTCCEEEEEECS-SCEEEEESS-----SCEEEEE
T ss_pred cceEEEECCEEEEEcCCCCE-----EEEEECCCCcEEeEE----CCCCcceeEEEEeC-CEEEEEEcc-----CCEEEEE
Confidence 35666678999999886543 889999887643221 22323334455554 499998543 4568999
Q ss_pred ECCCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEE-eccCCCCCCCC-e
Q 011542 159 DTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQ-LKLPGQAPSSR-C 236 (483)
Q Consensus 159 d~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~-~~~~g~~p~~r-~ 236 (483)
|+.|.+-..- .+.+-.+.+++..+++||+.-|. +.+..+|+++.+-.. +... ..+.+. .
T Consensus 122 D~~Tl~~~~t-----i~~~~eGwGLt~Dg~~L~vSdGs-------------~~l~~iDp~T~~v~~~I~V~-~~g~~v~~ 182 (268)
T 3nok_A 122 SGMPPQRERT-----TRYSGEGWGLCYWNGKLVRSDGG-------------TMLTFHEPDGFALVGAVQVK-LRGQPVEL 182 (268)
T ss_dssp ETTTTEEEEE-----EECSSCCCCEEEETTEEEEECSS-------------SEEEEECTTTCCEEEEEECE-ETTEECCC
T ss_pred ECCcCcEEEE-----EeCCCceeEEecCCCEEEEECCC-------------CEEEEEcCCCCeEEEEEEeC-CCCccccc
Confidence 9988765532 22223456777778899998652 445566998876543 2221 111111 1
Q ss_pred eeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEE
Q 011542 237 GHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKR 281 (483)
Q Consensus 237 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 281 (483)
-.-+...+++||+-- . ..++|.+.|+.+.+-..
T Consensus 183 lNeLe~~dG~lyanv-w-----------~s~~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 183 INELECANGVIYANI-W-----------HSSDVLEIDPATGTVVG 215 (268)
T ss_dssp EEEEEEETTEEEEEE-T-----------TCSEEEEECTTTCBEEE
T ss_pred ccccEEeCCEEEEEE-C-----------CCCeEEEEeCCCCcEEE
Confidence 112344588888622 1 24789999999886543
No 32
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.87 E-value=0.27 Score=47.02 Aligned_cols=115 Identities=11% Similarity=0.022 Sum_probs=64.8
Q ss_pred EEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCcc
Q 011542 25 AVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGD 103 (483)
Q Consensus 25 ~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~ 103 (483)
++...++.+++.|+.+ ..+.+||..+.+|..+..... ... .-.+++.. ++.+++.|+.++ .
T Consensus 14 ~~~s~~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~-------h~~-~v~~~~~~~~~~~l~~~~~dg-----~ 75 (372)
T 1k8k_C 14 HAWNKDRTQIAICPNN-----HEVHIYEKSGNKWVQVHELKE-------HNG-QVTGVDWAPDSNRIVTCGTDR-----N 75 (372)
T ss_dssp EEECTTSSEEEEECSS-----SEEEEEEEETTEEEEEEEEEC-------CSS-CEEEEEEETTTTEEEEEETTS-----C
T ss_pred EEECCCCCEEEEEeCC-----CEEEEEeCCCCcEEeeeeecC-------CCC-cccEEEEeCCCCEEEEEcCCC-----e
Confidence 3344567778887653 458899999988766654421 111 12223333 566677776543 4
Q ss_pred EEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 104 FWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 104 ~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
+.+||..++++...... ......-.+++...++.+++.|+.++ .+.+||..+..
T Consensus 76 i~vwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~ 129 (372)
T 1k8k_C 76 AYVWTLKGRTWKPTLVI--LRINRAARCVRWAPNEKKFAVGSGSR-----VISICYFEQEN 129 (372)
T ss_dssp EEEEEEETTEEEEEEEC--CCCSSCEEEEEECTTSSEEEEEETTS-----SEEEEEEETTT
T ss_pred EEEEECCCCeeeeeEEe--ecCCCceeEEEECCCCCEEEEEeCCC-----EEEEEEecCCC
Confidence 78899988887655431 11122222333334556777777543 35666665543
No 33
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.76 E-value=0.14 Score=49.74 Aligned_cols=186 Identities=11% Similarity=0.024 Sum_probs=100.9
Q ss_pred cEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCCCCccEEEEE
Q 011542 31 SKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRRLGDFWVLD 108 (483)
Q Consensus 31 ~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~~~~~~~yd 108 (483)
+.+|+.|+.+ ..+.++|..+++-...-.. .. .-.+++.. +..||+.|+.+ ..+.++|
T Consensus 2 ~~l~vs~~~d-----~~v~v~d~~~~~~~~~~~~---------~~--~~~~~~~s~dg~~l~~~~~~d-----~~i~v~d 60 (391)
T 1l0q_A 2 TFAYIANSES-----DNISVIDVTSNKVTATIPV---------GS--NPMGAVISPDGTKVYVANAHS-----NDVSIID 60 (391)
T ss_dssp EEEEEEETTT-----TEEEEEETTTTEEEEEEEC---------SS--SEEEEEECTTSSEEEEEEGGG-----TEEEEEE
T ss_pred CEEEEEcCCC-----CEEEEEECCCCeEEEEeec---------CC--CcceEEECCCCCEEEEECCCC-----CeEEEEE
Confidence 4677777653 3588999988765443211 11 12333332 34677776544 3588999
Q ss_pred CCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe-
Q 011542 109 TDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV- 186 (483)
Q Consensus 109 ~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~- 186 (483)
+.+++-...-. .+. .-.+++...++ .||+.|.. ...+.+||+.+++-..... .. ..-..++..
T Consensus 61 ~~~~~~~~~~~---~~~--~v~~~~~spdg~~l~~~~~~-----~~~v~v~d~~~~~~~~~~~---~~--~~~~~~~~s~ 125 (391)
T 1l0q_A 61 TATNNVIATVP---AGS--SPQGVAVSPDGKQVYVTNMA-----SSTLSVIDTTSNTVAGTVK---TG--KSPLGLALSP 125 (391)
T ss_dssp TTTTEEEEEEE---CSS--SEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEEEE---CS--SSEEEEEECT
T ss_pred CCCCeEEEEEE---CCC--CccceEECCCCCEEEEEECC-----CCEEEEEECCCCeEEEEEe---CC--CCcceEEECC
Confidence 98887655432 111 22333333343 56666543 2458999999887655431 11 112333343
Q ss_pred -CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE--eCCEEEEEcCCCCCCCCcccc
Q 011542 187 -EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS--GGHYLLLFGGHGTGGWLSRYD 263 (483)
Q Consensus 187 -~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~ 263 (483)
++.+|+.++.. ..+..+|+.+.+.......+. ....++. .+..+|+.++.+
T Consensus 126 dg~~l~~~~~~~------------~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~dg~~l~~~~~~~--------- 179 (391)
T 1l0q_A 126 DGKKLYVTNNGD------------KTVSVINTVTKAVINTVSVGR-----SPKGIAVTPDGTKVYVANFDS--------- 179 (391)
T ss_dssp TSSEEEEEETTT------------TEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTT---------
T ss_pred CCCEEEEEeCCC------------CEEEEEECCCCcEEEEEecCC-----CcceEEECCCCCEEEEEeCCC---------
Confidence 34677776532 345567887766554432111 1123333 244676665432
Q ss_pred eeeCcEEEEEcCCCceEE
Q 011542 264 IYYNDTIILDRLSAQWKR 281 (483)
Q Consensus 264 ~~~~~v~~yd~~~~~W~~ 281 (483)
+.+.+||+.+.+...
T Consensus 180 ---~~v~~~d~~~~~~~~ 194 (391)
T 1l0q_A 180 ---MSISVIDTVTNSVID 194 (391)
T ss_dssp ---TEEEEEETTTTEEEE
T ss_pred ---CEEEEEECCCCeEEE
Confidence 458899988775443
No 34
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.74 E-value=0.27 Score=46.12 Aligned_cols=219 Identities=12% Similarity=0.001 Sum_probs=109.3
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWV 106 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~ 106 (483)
..++..++.|+.+ ..+.+||..+.+......... .... -.+++.. +++.++.|+.++ .+.+
T Consensus 106 ~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~-------~~~~-i~~~~~~~~~~~l~~~~~dg-----~v~~ 167 (337)
T 1gxr_A 106 LPDGCTLIVGGEA-----STLSIWDLAAPTPRIKAELTS-------SAPA-CYALAISPDSKVCFSCCSDG-----NIAV 167 (337)
T ss_dssp CTTSSEEEEEESS-----SEEEEEECCCC--EEEEEEEC-------SSSC-EEEEEECTTSSEEEEEETTS-----CEEE
T ss_pred cCCCCEEEEEcCC-----CcEEEEECCCCCcceeeeccc-------CCCc-eEEEEECCCCCEEEEEeCCC-----cEEE
Confidence 4556666776643 358899999887544433211 1111 1222222 556666776543 4889
Q ss_pred EECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe
Q 011542 107 LDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV 186 (483)
Q Consensus 107 yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~ 186 (483)
||..+.+....-. . ....-.+++...++..++.|+.+ ..+.+||+.+.+-.... ..+. .-.++...
T Consensus 168 ~d~~~~~~~~~~~---~-~~~~i~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~---~~~~--~v~~~~~s 233 (337)
T 1gxr_A 168 WDLHNQTLVRQFQ---G-HTDGASCIDISNDGTKLWTGGLD-----NTVRSWDLREGRQLQQH---DFTS--QIFSLGYC 233 (337)
T ss_dssp EETTTTEEEEEEC---C-CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEE---ECSS--CEEEEEEC
T ss_pred EeCCCCceeeeee---c-ccCceEEEEECCCCCEEEEEecC-----CcEEEEECCCCceEeee---cCCC--ceEEEEEC
Confidence 9998876544321 1 11122233333455677777653 35888998877644332 1111 11233333
Q ss_pred -CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCCCCCCCCcccce
Q 011542 187 -EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLSRYDI 264 (483)
Q Consensus 187 -~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~ 264 (483)
+++++++|+.. ..+..||+.+..-..+. ... .. -.++.. .++.+++.|+.+
T Consensus 234 ~~~~~l~~~~~~------------~~i~~~~~~~~~~~~~~---~~~-~~-v~~~~~~~~~~~l~~~~~d---------- 286 (337)
T 1gxr_A 234 PTGEWLAVGMES------------SNVEVLHVNKPDKYQLH---LHE-SC-VLSLKFAYCGKWFVSTGKD---------- 286 (337)
T ss_dssp TTSSEEEEEETT------------SCEEEEETTSSCEEEEC---CCS-SC-EEEEEECTTSSEEEEEETT----------
T ss_pred CCCCEEEEEcCC------------CcEEEEECCCCCeEEEc---CCc-cc-eeEEEECCCCCEEEEecCC----------
Confidence 45666666543 23445666665433332 111 11 122333 345556666543
Q ss_pred eeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEE-CCEEEEEccCCC
Q 011542 265 YYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFGGFDG 312 (483)
Q Consensus 265 ~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~-~~~i~v~GG~~~ 312 (483)
+.+.+||+.+.+-...... .....+++.. ++.+++.|+.++
T Consensus 287 --g~i~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~dg 328 (337)
T 1gxr_A 287 --NLLNAWRTPYGASIFQSKE-----SSSVLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp --SEEEEEETTTCCEEEEEEC-----SSCEEEEEECTTSCEEEEEETTS
T ss_pred --CcEEEEECCCCeEEEEecC-----CCcEEEEEECCCCCEEEEecCCC
Confidence 3588889877654432221 1112233332 566777777655
No 35
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=96.73 E-value=0.25 Score=45.01 Aligned_cols=221 Identities=10% Similarity=-0.051 Sum_probs=109.4
Q ss_pred eeEEEECCcEEEE-EcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCC
Q 011542 23 HSAVNIGKSKVVV-FGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRR 100 (483)
Q Consensus 23 h~~~~~~~~~l~v-~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~ 100 (483)
+.++...++.+|+ .... ...+.+||+.+......... ... .-+.++.. +++||+... .
T Consensus 27 ~~i~~~~~g~l~v~~~~~-----~~~i~~~~~~~~~~~~~~~~-------~~~---~p~~i~~~~~g~l~v~~~-~---- 86 (270)
T 1rwi_B 27 SGVAVDSAGNVYVTSEGM-----YGRVVKLATGSTGTTVLPFN-------GLY---QPQGLAVDGAGTVYVTDF-N---- 86 (270)
T ss_dssp EEEEECTTCCEEEEECSS-----SCEEEEECC-----EECCCC-------SCC---SCCCEEECTTCCEEEEET-T----
T ss_pred cceEECCCCCEEEEccCC-----CCcEEEecCCCcccceEeeC-------CcC---CcceeEECCCCCEEEEcC-C----
Confidence 4445556678888 5332 14578888877665443211 001 11234443 567888754 1
Q ss_pred CccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcC
Q 011542 101 LGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (483)
Q Consensus 101 ~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~ 180 (483)
+.+.+||+.+.....+.. .....-.+++...++++|+.... ...+++|+..+......... .. ..-
T Consensus 87 -~~i~~~d~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~~~-~~---~~p 152 (270)
T 1rwi_B 87 -NRVVTLAAGSNNQTVLPF----DGLNYPEGLAVDTQGAVYVADRG-----NNRVVKLAAGSKTQTVLPFT-GL---NDP 152 (270)
T ss_dssp -TEEEEECTTCSCCEECCC----CSCSSEEEEEECTTCCEEEEEGG-----GTEEEEECTTCCSCEECCCC-SC---CSC
T ss_pred -CEEEEEeCCCceEeeeec----CCcCCCcceEECCCCCEEEEECC-----CCEEEEEECCCceeEeeccc-cC---CCc
Confidence 358899998765444331 11122234444446688887532 34588888776665543211 11 112
Q ss_pred ceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEe-CCEEEEEcCCCCCCC
Q 011542 181 HTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSG-GHYLLLFGGHGTGGW 258 (483)
Q Consensus 181 ~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~ 258 (483)
..++.. ++++|+..... ..+..||+.+..-...... .. ..-.++++. ++.+|+.....
T Consensus 153 ~~i~~~~~g~l~v~~~~~------------~~i~~~~~~~~~~~~~~~~-~~---~~p~~i~~d~~g~l~v~~~~~---- 212 (270)
T 1rwi_B 153 DGVAVDNSGNVYVTDTDN------------NRVVKLEAESNNQVVLPFT-DI---TAPWGIAVDEAGTVYVTEHNT---- 212 (270)
T ss_dssp CCEEECTTCCEEEEEGGG------------TEEEEECTTTCCEEECCCS-SC---CSEEEEEECTTCCEEEEETTT----
T ss_pred eeEEEeCCCCEEEEECCC------------CEEEEEecCCCceEeeccc-CC---CCceEEEECCCCCEEEEECCC----
Confidence 334444 56788875421 3455667776654333211 11 222344443 45788765321
Q ss_pred CcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEE-CCEEEEEcc
Q 011542 259 LSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFGG 309 (483)
Q Consensus 259 ~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~-~~~i~v~GG 309 (483)
+.+.+||+....-....... ...-.+++.. ++.+|+...
T Consensus 213 --------~~v~~~~~~~~~~~~~~~~~----~~~p~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 213 --------NQVVKLLAGSTTSTVLPFTG----LNTPLAVAVDSDRTVYVADR 252 (270)
T ss_dssp --------SCEEEECTTCSCCEECCCCS----CSCEEEEEECTTCCEEEEEG
T ss_pred --------CcEEEEcCCCCcceeeccCC----CCCceeEEECCCCCEEEEEC
Confidence 45889998765433322111 1122333332 467887754
No 36
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.72 E-value=0.09 Score=52.25 Aligned_cols=204 Identities=12% Similarity=0.071 Sum_probs=108.1
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CC-EEEEEccccCCCCCccEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DC-HMFIFGGRFGSRRLGDFWV 106 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~-~iyv~GG~~~~~~~~~~~~ 106 (483)
.+++.+++++.+++ ...++++|+.+++...+... + ....+.+.. ++ .|++.+..++ ...+++
T Consensus 188 pdg~~la~~s~~~~--~~~i~~~d~~tg~~~~l~~~---------~--~~~~~~~~spdg~~la~~~~~~g---~~~i~~ 251 (415)
T 2hqs_A 188 PDGSKLAYVTFESG--RSALVIQTLANGAVRQVASF---------P--RHNGAPAFSPDGSKLAFALSKTG---SLNLYV 251 (415)
T ss_dssp TTSSEEEEEECTTS--SCEEEEEETTTCCEEEEECC---------S--SCEEEEEECTTSSEEEEEECTTS---SCEEEE
T ss_pred CCCCEEEEEEecCC--CcEEEEEECCCCcEEEeecC---------C--CcccCEEEcCCCCEEEEEEecCC---CceEEE
Confidence 45666666664332 25799999999887765421 1 112222222 44 4554444322 236999
Q ss_pred EECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe
Q 011542 107 LDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV 186 (483)
Q Consensus 107 yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~ 186 (483)
+|+.+++...+.. . .....+.+...+++.+++++... ....++.+|+.+.+-..+.. . ......++..
T Consensus 252 ~d~~~~~~~~l~~---~--~~~~~~~~~spdg~~l~~~s~~~--g~~~i~~~d~~~~~~~~l~~---~--~~~~~~~~~s 319 (415)
T 2hqs_A 252 MDLASGQIRQVTD---G--RSNNTEPTWFPDSQNLAFTSDQA--GRPQVYKVNINGGAPQRITW---E--GSQNQDADVS 319 (415)
T ss_dssp EETTTCCEEECCC---C--SSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTSSCCEECCC---S--SSEEEEEEEC
T ss_pred EECCCCCEEeCcC---C--CCcccceEECCCCCEEEEEECCC--CCcEEEEEECCCCCEEEEec---C--CCcccCeEEC
Confidence 9999888766542 1 11122223334555445554321 13468999999887665541 1 1111222332
Q ss_pred -CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCCCCCCCCcccce
Q 011542 187 -EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLSRYDI 264 (483)
Q Consensus 187 -~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~ 264 (483)
+++.+++++..... ..+..+|+.+.+...+.. .. . ..+.+. -+++.+++++....
T Consensus 320 pdG~~l~~~~~~~g~---------~~i~~~d~~~~~~~~l~~---~~--~-~~~~~~spdg~~l~~~s~~~~-------- 376 (415)
T 2hqs_A 320 SDGKFMVMVSSNGGQ---------QHIAKQDLATGGVQVLSS---TF--L-DETPSLAPNGTMVIYSSSQGM-------- 376 (415)
T ss_dssp TTSSEEEEEEECSSC---------EEEEEEETTTCCEEECCC---SS--S-CEEEEECTTSSEEEEEEEETT--------
T ss_pred CCCCEEEEEECcCCc---------eEEEEEECCCCCEEEecC---CC--C-cCCeEEcCCCCEEEEEEcCCC--------
Confidence 44444444432211 345667888888766542 11 2 222333 35555666653321
Q ss_pred eeCcEEEEEcCCCceEEccC
Q 011542 265 YYNDTIILDRLSAQWKRLPI 284 (483)
Q Consensus 265 ~~~~v~~yd~~~~~W~~v~~ 284 (483)
...++++|+.......+..
T Consensus 377 -~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 377 -GSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp -EEEEEEEETTSCCEEECCC
T ss_pred -ccEEEEEECCCCcEEEeeC
Confidence 2479999998777777654
No 37
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=96.63 E-value=0.42 Score=44.10 Aligned_cols=231 Identities=8% Similarity=0.027 Sum_probs=115.9
Q ss_pred eeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCCC
Q 011542 23 HSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRR 100 (483)
Q Consensus 23 h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~ 100 (483)
+.+++..++.+|+.+..+ ..+.+||+....-..+...+. .......-+.+++. ++++|+.+...
T Consensus 33 ~~v~~~~~g~l~v~~~~~-----~~i~~~d~~g~~~~~~~~~~~-----~~~~~~~p~~i~~~~~~g~l~v~~~~~---- 98 (286)
T 1q7f_A 33 SGVAVNAQNDIIVADTNN-----HRIQIFDKEGRFKFQFGECGK-----RDSQLLYPNRVAVVRNSGDIIVTERSP---- 98 (286)
T ss_dssp EEEEECTTCCEEEEEGGG-----TEEEEECTTSCEEEEECCBSS-----STTCBSSEEEEEEETTTTEEEEEECGG----
T ss_pred ceEEECCCCCEEEEECCC-----CEEEEECCCCcEEEEecccCC-----CcccccCceEEEEEcCCCeEEEEcCCC----
Confidence 334444567888876432 358899988554444332110 00011122344442 67888876421
Q ss_pred CccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcC
Q 011542 101 LGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (483)
Q Consensus 101 ~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~ 180 (483)
...+.+||.....-..+.. +....-..+++..++++|+.... ...+.+||+.......+...+.... -
T Consensus 99 ~~~i~~~d~~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~~~~~~---p 166 (286)
T 1q7f_A 99 THQIQIYNQYGQFVRKFGA----TILQHPRGVTVDNKGRIIVVECK-----VMRVIIFDQNGNVLHKFGCSKHLEF---P 166 (286)
T ss_dssp GCEEEEECTTSCEEEEECT----TTCSCEEEEEECTTSCEEEEETT-----TTEEEEECTTSCEEEEEECTTTCSS---E
T ss_pred CCEEEEECCCCcEEEEecC----ccCCCceEEEEeCCCCEEEEECC-----CCEEEEEcCCCCEEEEeCCCCccCC---c
Confidence 1358899965544333331 11122234444456688887542 3468899976655444431111111 1
Q ss_pred ceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCCCCCCC
Q 011542 181 HTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGW 258 (483)
Q Consensus 181 ~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~ 258 (483)
..+++. ++++|+..... ..+.+||++......+...+.. ..-.++++ .++.+|+......
T Consensus 167 ~~i~~~~~g~l~v~~~~~------------~~i~~~~~~g~~~~~~~~~g~~---~~p~~i~~d~~G~l~v~~~~~~--- 228 (286)
T 1q7f_A 167 NGVVVNDKQEIFISDNRA------------HCVKVFNYEGQYLRQIGGEGIT---NYPIGVGINSNGEILIADNHNN--- 228 (286)
T ss_dssp EEEEECSSSEEEEEEGGG------------TEEEEEETTCCEEEEESCTTTS---CSEEEEEECTTCCEEEEECSSS---
T ss_pred EEEEECCCCCEEEEECCC------------CEEEEEcCCCCEEEEEccCCcc---CCCcEEEECCCCCEEEEeCCCC---
Confidence 233333 57888875421 4456678766544444422211 12223444 3567888654321
Q ss_pred CcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEE-CCEEEEEc
Q 011542 259 LSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFG 308 (483)
Q Consensus 259 ~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~-~~~i~v~G 308 (483)
..|.+||+....-..+..... .. ..++++.. ++++|+..
T Consensus 229 --------~~i~~~~~~g~~~~~~~~~~~--~~-~~~~i~~~~~g~l~vs~ 268 (286)
T 1q7f_A 229 --------FNLTIFTQDGQLISALESKVK--HA-QCFDVALMDDGSVVLAS 268 (286)
T ss_dssp --------CEEEEECTTSCEEEEEEESSC--CS-CEEEEEEETTTEEEEEE
T ss_pred --------EEEEEECCCCCEEEEEcccCC--CC-cceeEEECCCCcEEEEC
Confidence 158889976554444433211 11 12233333 57888874
No 38
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.57 E-value=0.56 Score=44.78 Aligned_cols=219 Identities=11% Similarity=0.114 Sum_probs=106.8
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEE-EECCEEEEEccccCCCCCccEEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAV-AIDCHMFIFGGRFGSRRLGDFWV 106 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~-~~~~~iyv~GG~~~~~~~~~~~~ 106 (483)
+.++.+|+.|-. .-+++-+-.-.+|+.+.... +.+-....++ .-++.+|+.|.. + .+++
T Consensus 87 ~~~~~~~~~g~~------g~i~~S~DgG~tW~~~~~~~--------~~~~~~~~i~~~~~~~~~~~~~~-g-----~v~~ 146 (327)
T 2xbg_A 87 FQGNEGWIVGEP------PIMLHTTDGGQSWSQIPLDP--------KLPGSPRLIKALGNGSAEMITNV-G-----AIYR 146 (327)
T ss_dssp EETTEEEEEEET------TEEEEESSTTSSCEECCCCT--------TCSSCEEEEEEEETTEEEEEETT-C-----CEEE
T ss_pred ecCCeEEEEECC------CeEEEECCCCCCceECcccc--------CCCCCeEEEEEECCCCEEEEeCC-c-----cEEE
Confidence 334678887531 12443222246899976321 1111123333 346788887642 1 2444
Q ss_pred EECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECC-CCceEEeccCCCCCCCCcCceEEE
Q 011542 107 LDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI-SLEWMQLPVTGSVPPPRCGHTATM 185 (483)
Q Consensus 107 yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-t~~W~~i~~~~~~p~~r~~~~~~~ 185 (483)
-.=.-.+|+.+.. +.....++++...++.+|++|-. ..+++-+-. -.+|+.+. . +.+...+.++.
T Consensus 147 S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~------G~~~~S~d~gG~tW~~~~---~-~~~~~~~~~~~ 212 (327)
T 2xbg_A 147 TKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSR------GSFYSTWEPGQTAWEPHN---R-TTSRRLHNMGF 212 (327)
T ss_dssp ESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETT------SSEEEEECTTCSSCEEEE---C-CSSSCEEEEEE
T ss_pred EcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECC------CcEEEEeCCCCCceeECC---C-CCCCccceeEE
Confidence 3323568999873 22223445544455677776632 124444322 57899885 2 23333344444
Q ss_pred e-CCEEEEEccCCCCCCcccceecccccccccCC-CCCeEEeccCCCCCCCCeeeEEEEe-CCEEEEEcCCCCCCCCccc
Q 011542 186 V-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENE-TPGWTQLKLPGQAPSSRCGHTITSG-GHYLLLFGGHGTGGWLSRY 262 (483)
Q Consensus 186 ~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~-~~~W~~~~~~g~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~ 262 (483)
. ++.+|+.+.... + ...+.+ ..+|+.+..+ ..+.....++++.. ++.+|+.|+..
T Consensus 213 ~~~g~~~~~~~~G~-------~------~~s~~D~G~tW~~~~~~-~~~~~~~~~~v~~~~~~~~~~~g~~g-------- 270 (327)
T 2xbg_A 213 TPDGRLWMIVNGGK-------I------AFSDPDNSENWGELLSP-LRRNSVGFLDLAYRTPNEVWLAGGAG-------- 270 (327)
T ss_dssp CTTSCEEEEETTTE-------E------EEEETTEEEEECCCBCT-TSSCCSCEEEEEESSSSCEEEEESTT--------
T ss_pred CCCCCEEEEeCCce-------E------EEecCCCCCeeEeccCC-cccCCcceEEEEecCCCEEEEEeCCC--------
Confidence 3 568887764210 1 111122 5578876521 12222223344433 56788887632
Q ss_pred ceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEE-CCEEEEEcc
Q 011542 263 DIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFGG 309 (483)
Q Consensus 263 ~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~-~~~i~v~GG 309 (483)
.+++-.-...+|+.+...... +-..+.++.. ++.+++.|.
T Consensus 271 -----~i~~S~DgG~tW~~~~~~~~~--~~~~~~v~~~~~~~~~~~G~ 311 (327)
T 2xbg_A 271 -----ALLCSQDGGQTWQQDVDVKKV--PSNFYKILFFSPDQGFILGQ 311 (327)
T ss_dssp -----CEEEESSTTSSCEECGGGTTS--SSCCCEEEEEETTEEEEECS
T ss_pred -----eEEEeCCCCcccEEcCccCCC--CCCeEEEEEECCCceEEEcC
Confidence 243332346799998743111 1223444443 566665553
No 39
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.56 E-value=0.26 Score=45.62 Aligned_cols=150 Identities=9% Similarity=-0.052 Sum_probs=90.9
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLD 108 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd 108 (483)
.++.+|+..|..+. +.++|+.+++=..-- . +..-++..++..+++||+.... -+.+++||
T Consensus 63 ~~~~Ly~stG~~g~-----v~~iD~~Tgkv~~~~-l---------~~~~FgeGit~~g~~Ly~ltw~-----~~~v~V~D 122 (268)
T 3nok_A 63 HQGHFFESTGHQGT-----LRQLSLESAQPVWME-R---------LGNIFAEGLASDGERLYQLTWT-----EGLLFTWS 122 (268)
T ss_dssp ETTEEEEEETTTTE-----EEECCSSCSSCSEEE-E---------CTTCCEEEEEECSSCEEEEESS-----SCEEEEEE
T ss_pred ECCEEEEEcCCCCE-----EEEEECCCCcEEeEE-C---------CCCcceeEEEEeCCEEEEEEcc-----CCEEEEEE
Confidence 44789988886443 889999988643321 1 2233556678889999998543 24699999
Q ss_pred CCCCeEEE-eecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEE-eccCCCCCCCCc-CceEEE
Q 011542 109 TDIWQWSE-LTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQ-LPVTGSVPPPRC-GHTATM 185 (483)
Q Consensus 109 ~~t~~W~~-l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~-i~~~~~~p~~r~-~~~~~~ 185 (483)
+.+.+-.. ++ .+-.+.+++.-+ +.+|+.-| .+.++.+|+.|.+-.. +.+. ..+.+.. --.+..
T Consensus 123 ~~Tl~~~~ti~------~~~eGwGLt~Dg-~~L~vSdG------s~~l~~iDp~T~~v~~~I~V~-~~g~~v~~lNeLe~ 188 (268)
T 3nok_A 123 GMPPQRERTTR------YSGEGWGLCYWN-GKLVRSDG------GTMLTFHEPDGFALVGAVQVK-LRGQPVELINELEC 188 (268)
T ss_dssp TTTTEEEEEEE------CSSCCCCEEEET-TEEEEECS------SSEEEEECTTTCCEEEEEECE-ETTEECCCEEEEEE
T ss_pred CCcCcEEEEEe------CCCceeEEecCC-CEEEEECC------CCEEEEEcCCCCeEEEEEEeC-CCCcccccccccEE
Confidence 99876543 33 222345555554 48888754 4579999999976543 2221 1222211 122344
Q ss_pred eCCEEEEEccCCCCCCcccceecccccccccCCCCCeEE
Q 011542 186 VEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQ 224 (483)
Q Consensus 186 ~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~ 224 (483)
.+++||+-- |.-+.+.+.|+.+.+-..
T Consensus 189 ~dG~lyanv------------w~s~~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 189 ANGVIYANI------------WHSSDVLEIDPATGTVVG 215 (268)
T ss_dssp ETTEEEEEE------------TTCSEEEEECTTTCBEEE
T ss_pred eCCEEEEEE------------CCCCeEEEEeCCCCcEEE
Confidence 578888632 122556666998887543
No 40
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.17 Score=48.36 Aligned_cols=109 Identities=7% Similarity=0.043 Sum_probs=62.4
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-C--CEEEEEccccCCCCCccEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-D--CHMFIFGGRFGSRRLGDFW 105 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~--~~iyv~GG~~~~~~~~~~~ 105 (483)
.++..++.|+.++ .+.+||....++..+..... . ...-.+++.. + +.+++.|+.++ .+.
T Consensus 21 ~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~-------h-~~~v~~~~~~~~~~~~~l~s~~~dg-----~v~ 82 (379)
T 3jrp_A 21 YYGKRLATCSSDK-----TIKIFEVEGETHKLIDTLTG-------H-EGPVWRVDWAHPKFGTILASCSYDG-----KVL 82 (379)
T ss_dssp SSSSEEEEEETTS-----CEEEEEEETTEEEEEEEECC-------C-SSCEEEEEECCGGGCSEEEEEETTS-----CEE
T ss_pred CCCCEEEEEECCC-----cEEEEecCCCcceeeeEecC-------C-CCcEEEEEeCCCCCCCEEEEeccCC-----EEE
Confidence 5566777777543 47888888777766654311 1 1112223322 2 56777776543 478
Q ss_pred EEECCCCeEEEeecCCCCCCCC-cccEEEEECC--cEEEEEecCCCCcCCccEEEEECCCC
Q 011542 106 VLDTDIWQWSELTSFGDLPSPR-DFAAASAIGN--RKIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 106 ~yd~~t~~W~~l~~~~~~p~~r-~~~~~~~~~~--~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
++|..+++|..+.. ..... .-.+++...+ +.+++.|+.++ .+.+||+.+.
T Consensus 83 iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~ 135 (379)
T 3jrp_A 83 IWKEENGRWSQIAV---HAVHSASVNSVQWAPHEYGPLLLVASSDG-----KVSVVEFKEN 135 (379)
T ss_dssp EEEEETTEEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETTS-----EEEEEECCTT
T ss_pred EEEcCCCceeEeee---ecCCCcceEEEEeCCCCCCCEEEEecCCC-----cEEEEecCCC
Confidence 89999998876654 22211 2222333333 46777777543 4778888765
No 41
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.55 E-value=0.27 Score=48.76 Aligned_cols=223 Identities=10% Similarity=0.036 Sum_probs=113.2
Q ss_pred cceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCC
Q 011542 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPS 125 (483)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~ 125 (483)
..++++|.....-..+... ..........-+++.+++++..+. ...++++|+.+++...+.. .+
T Consensus 159 ~~i~i~d~~g~~~~~l~~~----------~~~v~~~~~Spdg~~la~~s~~~~--~~~i~~~d~~tg~~~~l~~---~~- 222 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRS----------PQPLMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQVAS---FP- 222 (415)
T ss_dssp EEEEEEETTSCSCEEEEEE----------SSCEEEEEECTTSSEEEEEECTTS--SCEEEEEETTTCCEEEEEC---CS-
T ss_pred ceEEEEcCCCCCCEEEeCC----------CCcceeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCcEEEeec---CC-
Confidence 5789999887655554421 111122222225555666654432 2479999999988776653 21
Q ss_pred CCcccEEEEECCcE-EEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe-CCEEEEEccCCCCCCcc
Q 011542 126 PRDFAAASAIGNRK-IVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIM 203 (483)
Q Consensus 126 ~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~ 203 (483)
....+.+.-.+++ |++.+..++ ...++.+|+.+++...+. .... ........ +++.+++++.....
T Consensus 223 -~~~~~~~~spdg~~la~~~~~~g---~~~i~~~d~~~~~~~~l~---~~~~--~~~~~~~spdg~~l~~~s~~~g~--- 290 (415)
T 2hqs_A 223 -RHNGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVT---DGRS--NNTEPTWFPDSQNLAFTSDQAGR--- 290 (415)
T ss_dssp -SCEEEEEECTTSSEEEEEECTTS---SCEEEEEETTTCCEEECC---CCSS--CEEEEEECTTSSEEEEEECTTSS---
T ss_pred -CcccCEEEcCCCCEEEEEEecCC---CceEEEEECCCCCEEeCc---CCCC--cccceEECCCCCEEEEEECCCCC---
Confidence 1222333334444 554554322 346999999998887665 2211 11222232 44444444322111
Q ss_pred cceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEc
Q 011542 204 GDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRL 282 (483)
Q Consensus 204 ~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v 282 (483)
..++.+|+.+..-..+.. ......+++. -+++.+++++.... ...++++|+.+.....+
T Consensus 291 ------~~i~~~d~~~~~~~~l~~-----~~~~~~~~~~spdG~~l~~~~~~~g---------~~~i~~~d~~~~~~~~l 350 (415)
T 2hqs_A 291 ------PQVYKVNINGGAPQRITW-----EGSQNQDADVSSDGKFMVMVSSNGG---------QQHIAKQDLATGGVQVL 350 (415)
T ss_dssp ------CEEEEEETTSSCCEECCC-----SSSEEEEEEECTTSSEEEEEEECSS---------CEEEEEEETTTCCEEEC
T ss_pred ------cEEEEEECCCCCEEEEec-----CCCcccCeEECCCCCEEEEEECcCC---------ceEEEEEECCCCCEEEe
Confidence 234556777766554431 1122223333 34444444443221 24699999998887765
Q ss_pred cCCCCCCCCCcceEEEEE-CCEEEEEccCCCCCccCcEEEEcC
Q 011542 283 PIGNEPPPARAYHSMTCL-GSLYLLFGGFDGKSTFGDIWWLVP 324 (483)
Q Consensus 283 ~~~~~~p~~R~~~~~~~~-~~~i~v~GG~~~~~~~~d~w~l~~ 324 (483)
... . ...+.+.. +++.+++++.++. ...+|.++.
T Consensus 351 ~~~-----~-~~~~~~~spdg~~l~~~s~~~~--~~~l~~~d~ 385 (415)
T 2hqs_A 351 SST-----F-LDETPSLAPNGTMVIYSSSQGM--GSVLNLVST 385 (415)
T ss_dssp CCS-----S-SCEEEEECTTSSEEEEEEEETT--EEEEEEEET
T ss_pred cCC-----C-CcCCeEEcCCCCEEEEEEcCCC--ccEEEEEEC
Confidence 442 1 22223332 5666666664432 235665554
No 42
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.52 E-value=0.51 Score=43.78 Aligned_cols=190 Identities=9% Similarity=-0.049 Sum_probs=106.9
Q ss_pred eEEEEEC-CEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEE
Q 011542 80 HIAVAID-CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVL 158 (483)
Q Consensus 80 h~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y 158 (483)
+.++..+ +.+|+..|..+ .+.+.++|+.+++=..--+ ++...+..+++..++ ++|+..- ..+.+++|
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~i~---l~~~~fgeGi~~~g~-~lyv~t~-----~~~~v~vi 91 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENIHK---MDDSYFGEGLTLLNE-KLYQVVW-----LKNIGFIY 91 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEEEE---CCTTCCEEEEEEETT-EEEEEET-----TCSEEEEE
T ss_pred ccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEEEe---cCCCcceEEEEEeCC-EEEEEEe-----cCCEEEEE
Confidence 5666665 79999877432 2469999999987554332 333334445555554 9999854 34569999
Q ss_pred ECCCCceEE-eccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCC--CCCC
Q 011542 159 DTISLEWMQ-LPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQA--PSSR 235 (483)
Q Consensus 159 d~~t~~W~~-i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~--p~~r 235 (483)
|+.|.+=.. ++ .+ + -.+.+++.-++++|+.-|. +.+..+|+++.+-...-..+.. |..+
T Consensus 92 D~~t~~v~~~i~-~g-~---~~g~glt~Dg~~l~vs~gs-------------~~l~viD~~t~~v~~~I~Vg~~~~p~~~ 153 (266)
T 2iwa_A 92 DRRTLSNIKNFT-HQ-M---KDGWGLATDGKILYGSDGT-------------SILYEIDPHTFKLIKKHNVKYNGHRVIR 153 (266)
T ss_dssp ETTTTEEEEEEE-CC-S---SSCCEEEECSSSEEEECSS-------------SEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred ECCCCcEEEEEE-CC-C---CCeEEEEECCCEEEEECCC-------------CeEEEEECCCCcEEEEEEECCCCccccc
Confidence 998765332 22 11 1 2334455556789987541 4455568888664432211111 2222
Q ss_pred eeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEE-ccCCCC--------CCCCCcceEEEEE--CCEE
Q 011542 236 CGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKR-LPIGNE--------PPPARAYHSMTCL--GSLY 304 (483)
Q Consensus 236 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~-v~~~~~--------~p~~R~~~~~~~~--~~~i 304 (483)
-. .+...++++|+--. ..++|.+.|+.+.+-.. ++..+. .+..-.-.+++.. ++++
T Consensus 154 ~n-ele~~dg~lyvn~~------------~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l 220 (266)
T 2iwa_A 154 LN-ELEYINGEVWANIW------------QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI 220 (266)
T ss_dssp EE-EEEEETTEEEEEET------------TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred ce-eEEEECCEEEEecC------------CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEE
Confidence 22 33334778887432 24789999998876433 221100 0111122445554 4689
Q ss_pred EEEccCCC
Q 011542 305 LLFGGFDG 312 (483)
Q Consensus 305 ~v~GG~~~ 312 (483)
||.|+..+
T Consensus 221 fVTgk~~~ 228 (266)
T 2iwa_A 221 FVTGKLWP 228 (266)
T ss_dssp EEEETTCS
T ss_pred EEECCCCC
Confidence 99987543
No 43
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.52 E-value=0.21 Score=45.70 Aligned_cols=190 Identities=8% Similarity=-0.082 Sum_probs=98.0
Q ss_pred cccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCC-CeEEEeecCCC
Q 011542 44 FLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDI-WQWSELTSFGD 122 (483)
Q Consensus 44 ~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t-~~W~~l~~~~~ 122 (483)
.-..++++|+.+++...+.... .........-+++.+++++ . ..++++|+.+ ++...+..
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~----------~~v~~~~~spdg~~l~~~~-~-----~~i~~~d~~~~~~~~~~~~--- 80 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTP----------ELFEAPNWSPDGKYLLLNS-E-----GLLYRLSLAGDPSPEKVDT--- 80 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEES----------SCCEEEEECTTSSEEEEEE-T-----TEEEEEESSSCCSCEECCC---
T ss_pred cceeEEEEeCCCCceeeeccCC----------cceEeeEECCCCCEEEEEc-C-----CeEEEEeCCCCCCceEecc---
Confidence 3467999999998877654321 1112222223556566654 1 2699999998 77665542
Q ss_pred CCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe-CC-EEEEEccCCCCC
Q 011542 123 LPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV-EK-RLLIYGGRGGGG 200 (483)
Q Consensus 123 ~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~ 200 (483)
.+......+++...+++.+++++.... ....+|.++..+.+-..+.. ... ...+... ++ .|++.++....
T Consensus 81 ~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~---~~~---~~~~~~spdg~~l~~~~~~~~~- 152 (297)
T 2ojh_A 81 GFATICNNDHGISPDGALYAISDKVEF-GKSAIYLLPSTGGTPRLMTK---NLP---SYWHGWSPDGKSFTYCGIRDQV- 152 (297)
T ss_dssp TTCCCBCSCCEECTTSSEEEEEECTTT-SSCEEEEEETTCCCCEECCS---SSS---EEEEEECTTSSEEEEEEEETTE-
T ss_pred ccccccccceEECCCCCEEEEEEeCCC-CcceEEEEECCCCceEEeec---CCC---ccceEECCCCCEEEEEECCCCc-
Confidence 221122223334445566666653322 35678999988887666541 111 2222333 33 55555543211
Q ss_pred CcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCE-EEEEcCCCCCCCCcccceeeCcEEEEEcCCCc
Q 011542 201 PIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHY-LLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (483)
Q Consensus 201 ~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~-i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (483)
..++.++..+.....+. ..+ ... ..+.. -+++ |++.+.... ...+|.+++....
T Consensus 153 ---------~~l~~~~~~~~~~~~~~---~~~-~~~-~~~~~s~dg~~l~~~~~~~~----------~~~i~~~~~~~~~ 208 (297)
T 2ojh_A 153 ---------FDIYSMDIDSGVETRLT---HGE-GRN-DGPDYSPDGRWIYFNSSRTG----------QMQIWRVRVDGSS 208 (297)
T ss_dssp ---------EEEEEEETTTCCEEECC---CSS-SCE-EEEEECTTSSEEEEEECTTS----------SCEEEEEETTSSC
T ss_pred ---------eEEEEEECCCCcceEcc---cCC-Ccc-ccceECCCCCEEEEEecCCC----------CccEEEECCCCCC
Confidence 13344466666655544 111 112 22222 3444 444433221 2568888887777
Q ss_pred eEEccC
Q 011542 279 WKRLPI 284 (483)
Q Consensus 279 W~~v~~ 284 (483)
...+..
T Consensus 209 ~~~~~~ 214 (297)
T 2ojh_A 209 VERITD 214 (297)
T ss_dssp EEECCC
T ss_pred cEEEec
Confidence 666644
No 44
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.44 E-value=0.6 Score=45.80 Aligned_cols=207 Identities=8% Similarity=-0.070 Sum_probs=101.7
Q ss_pred eEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE-ECCEEEEEccccCCCCCc
Q 011542 24 SAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSRRLG 102 (483)
Q Consensus 24 ~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~~iyv~GG~~~~~~~~ 102 (483)
+++...++.+++.++.+ ..+.+||+.+++......... ...+... -.+++. -++++|+.|+.++
T Consensus 127 ~~~~s~~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~----~~~~~~~-v~~~~~~~~~~~~~s~~~d~----- 191 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLED-----EGMDVLDINSGQTVRLSPPEK----YKKKLGF-VETISIPEHNELWVSQMQAN----- 191 (433)
T ss_dssp CCEESSSSEEEEEBTTS-----SSEEEEETTTCCEEEECCCHH----HHTTCCE-EEEEEEGGGTEEEEEEGGGT-----
T ss_pred EEEEeCCCeEEEEeCCC-----CeEEEEECCCCeEeeecCccc----ccccCCc-eeEEEEcCCCEEEEEECCCC-----
Confidence 33343456787777643 348999999887665321100 0011111 112222 2678888776443
Q ss_pred cEEEEECCCCeEEEeecCCCCCCCCcccEEEEECC-cEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCc
Q 011542 103 DFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGN-RKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGH 181 (483)
Q Consensus 103 ~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~ 181 (483)
.+.+||+.+.+-...-. .....-.+++...+ +.+|+.++.+ ..+.+||+.+.+..... .. ...-.
T Consensus 192 ~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~-----~~i~~~d~~~~~~~~~~---~~--~~~~~ 257 (433)
T 3bws_A 192 AVHVFDLKTLAYKATVD----LTGKWSKILLYDPIRDLVYCSNWIS-----EDISVIDRKTKLEIRKT---DK--IGLPR 257 (433)
T ss_dssp EEEEEETTTCCEEEEEE----CSSSSEEEEEEETTTTEEEEEETTT-----TEEEEEETTTTEEEEEC---CC--CSEEE
T ss_pred EEEEEECCCceEEEEEc----CCCCCeeEEEEcCCCCEEEEEecCC-----CcEEEEECCCCcEEEEe---cC--CCCce
Confidence 58899998765433221 11112223333333 3676766543 36899999988765543 11 11122
Q ss_pred eEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE--eCCEEEEEcCCCCCCC
Q 011542 182 TATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS--GGHYLLLFGGHGTGGW 258 (483)
Q Consensus 182 ~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~ 258 (483)
.++.. +++.+++++.........| ..+..||+.+.+-.... ..+. ....++. .++.+|+.++.+
T Consensus 258 ~~~~~~~g~~l~~~~~~~~~~~~~d----g~i~~~d~~~~~~~~~~---~~~~--~~~~~~~~~~g~~l~~~~~~~---- 324 (433)
T 3bws_A 258 GLLLSKDGKELYIAQFSASNQESGG----GRLGIYSMDKEKLIDTI---GPPG--NKRHIVSGNTENKIYVSDMCC---- 324 (433)
T ss_dssp EEEECTTSSEEEEEEEESCTTCSCC----EEEEEEETTTTEEEEEE---EEEE--CEEEEEECSSTTEEEEEETTT----
T ss_pred EEEEcCCCCEEEEEECCCCccccCC----CeEEEEECCCCcEEeec---cCCC--CcceEEECCCCCEEEEEecCC----
Confidence 33333 3434444433221100001 34566787766443322 1111 1112222 244677776533
Q ss_pred CcccceeeCcEEEEEcCCCceE
Q 011542 259 LSRYDIYYNDTIILDRLSAQWK 280 (483)
Q Consensus 259 ~~~~~~~~~~v~~yd~~~~~W~ 280 (483)
+.+.+||+.+.+-.
T Consensus 325 --------~~v~v~d~~~~~~~ 338 (433)
T 3bws_A 325 --------SKIEVYDLKEKKVQ 338 (433)
T ss_dssp --------TEEEEEETTTTEEE
T ss_pred --------CEEEEEECCCCcEE
Confidence 45889998866543
No 45
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.33 E-value=0.78 Score=43.76 Aligned_cols=240 Identities=15% Similarity=0.139 Sum_probs=117.6
Q ss_pred cceEEceeCCCCCCCCCCCcceeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeE
Q 011542 2 HYWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHI 81 (483)
Q Consensus 2 ~~W~~~~~~~~~g~~p~~R~~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~ 81 (483)
..|+++.. |....-..+...+++.+|++|-. .-++.-.-.-.+|+.+.... ........+
T Consensus 25 ~~W~~~~~-------~~~~~~~~v~~~~~~~~~~~G~~------g~i~~s~DgG~tW~~~~~~~-------~~~~~~~~~ 84 (327)
T 2xbg_A 25 NPWEAIQL-------PTTATILDMSFIDRHHGWLVGVN------ATLMETRDGGQTWEPRTLVL-------DHSDYRFNS 84 (327)
T ss_dssp CCEEEEEC-------SCSSCEEEEEESSSSCEEEEETT------TEEEEESSTTSSCEECCCCC-------SCCCCEEEE
T ss_pred CCceEeec-------CCCCcEEEEEECCCCcEEEEcCC------CeEEEeCCCCCCCeECCCCC-------CCCCccEEE
Confidence 36888752 22222233333455678886531 12443322345899975321 011122344
Q ss_pred EEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECC
Q 011542 82 AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI 161 (483)
Q Consensus 82 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 161 (483)
++..++.+|+.|- .+ .+++-.=.-.+|+.+......|. ..+.++...++.+|+.|.. ..+++-.-.
T Consensus 85 i~~~~~~~~~~g~-~g-----~i~~S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~------g~v~~S~Dg 150 (327)
T 2xbg_A 85 VSFQGNEGWIVGE-PP-----IMLHTTDGGQSWSQIPLDPKLPG--SPRLIKALGNGSAEMITNV------GAIYRTKDS 150 (327)
T ss_dssp EEEETTEEEEEEE-TT-----EEEEESSTTSSCEECCCCTTCSS--CEEEEEEEETTEEEEEETT------CCEEEESST
T ss_pred EEecCCeEEEEEC-CC-----eEEEECCCCCCceECccccCCCC--CeEEEEEECCCCEEEEeCC------ccEEEEcCC
Confidence 4555778888752 11 23332222468998864211222 2234444556688887742 134444334
Q ss_pred CCceEEeccCCCCCCCCcCceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEE
Q 011542 162 SLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTI 240 (483)
Q Consensus 162 t~~W~~i~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~ 240 (483)
-.+|+.+.. +.+..-+.++.. ++.+|++|.. + .++.. -|....+|+.+.. +.+...+.+
T Consensus 151 G~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~-G------~~~~S-----~d~gG~tW~~~~~----~~~~~~~~~ 210 (327)
T 2xbg_A 151 GKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSR-G------SFYST-----WEPGQTAWEPHNR----TTSRRLHNM 210 (327)
T ss_dssp TSSEEEEEC----SCCCCEEEEEECTTSCEEEEETT-S------SEEEE-----ECTTCSSCEEEEC----CSSSCEEEE
T ss_pred CCCCEEeec----CCCcceEEEEEcCCCcEEEEECC-C------cEEEE-----eCCCCCceeECCC----CCCCcccee
Confidence 568999862 222223344444 4567766532 1 11221 1333678998862 223333444
Q ss_pred EE-eCCEEEEEcCCCCCCCCcccceeeCcEEEEEcC-CCceEEccCCCCCCCCCcceEEEEE-CCEEEEEcc
Q 011542 241 TS-GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRL-SAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFGG 309 (483)
Q Consensus 241 ~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~-~~~W~~v~~~~~~p~~R~~~~~~~~-~~~i~v~GG 309 (483)
++ .++.+|+.+.. + .+++.+.. ..+|+.+..... +.....++++.. ++.+|+.|+
T Consensus 211 ~~~~~g~~~~~~~~---G----------~~~~s~~D~G~tW~~~~~~~~-~~~~~~~~v~~~~~~~~~~~g~ 268 (327)
T 2xbg_A 211 GFTPDGRLWMIVNG---G----------KIAFSDPDNSENWGELLSPLR-RNSVGFLDLAYRTPNEVWLAGG 268 (327)
T ss_dssp EECTTSCEEEEETT---T----------EEEEEETTEEEEECCCBCTTS-SCCSCEEEEEESSSSCEEEEES
T ss_pred EECCCCCEEEEeCC---c----------eEEEecCCCCCeeEeccCCcc-cCCcceEEEEecCCCEEEEEeC
Confidence 44 45678876642 1 14444322 568888754211 112223344333 567888876
No 46
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.32 E-value=0.76 Score=43.50 Aligned_cols=219 Identities=11% Similarity=0.081 Sum_probs=104.8
Q ss_pred CcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEEC
Q 011542 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDT 109 (483)
Q Consensus 30 ~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 109 (483)
++.+++.|+.+ ..+.++|..+.+-...-.. .+. .....+..-+++.++.|+.++ .+.+||.
T Consensus 91 ~~~~l~s~s~D-----~~i~lWd~~~~~~~~~~~~--------~~~-~~~~~~~spdg~~l~~g~~dg-----~v~i~~~ 151 (321)
T 3ow8_A 91 TLPIAASSSLD-----AHIRLWDLENGKQIKSIDA--------GPV-DAWTLAFSPDSQYLATGTHVG-----KVNIFGV 151 (321)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEEC--------CTT-CCCCEEECTTSSEEEEECTTS-----EEEEEET
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCCEEEEEeC--------CCc-cEEEEEECCCCCEEEEEcCCC-----cEEEEEc
Confidence 34455555543 3477888887754332111 111 111122223556667776443 4778888
Q ss_pred CCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe-CC
Q 011542 110 DIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV-EK 188 (483)
Q Consensus 110 ~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~-~~ 188 (483)
.+.+-...-. .......+++...+++.++.|+.++ .+.+||+.+++-...- .+ ... .-.+++.. ++
T Consensus 152 ~~~~~~~~~~----~~~~~v~~~~~spdg~~lasg~~dg-----~i~iwd~~~~~~~~~~-~~-h~~--~v~~l~~spd~ 218 (321)
T 3ow8_A 152 ESGKKEYSLD----TRGKFILSIAYSPDGKYLASGAIDG-----IINIFDIATGKLLHTL-EG-HAM--PIRSLTFSPDS 218 (321)
T ss_dssp TTCSEEEEEE----CSSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEE-CC-CSS--CCCEEEECTTS
T ss_pred CCCceeEEec----CCCceEEEEEECCCCCEEEEEcCCC-----eEEEEECCCCcEEEEE-cc-cCC--ceeEEEEcCCC
Confidence 7765332211 1112223333445667788887654 4788999887644321 11 111 11233333 55
Q ss_pred EEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCCCCCCCCcccceeeC
Q 011542 189 RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLSRYDIYYN 267 (483)
Q Consensus 189 ~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~ 267 (483)
++++.|+..+ .+..||+.+......- . . ... .-.+++. -++..++.|+.+ .
T Consensus 219 ~~l~s~s~dg------------~i~iwd~~~~~~~~~~-~-~-h~~-~v~~~~~sp~~~~l~s~s~D------------~ 270 (321)
T 3ow8_A 219 QLLVTASDDG------------YIKIYDVQHANLAGTL-S-G-HAS-WVLNVAFCPDDTHFVSSSSD------------K 270 (321)
T ss_dssp CEEEEECTTS------------CEEEEETTTCCEEEEE-C-C-CSS-CEEEEEECTTSSEEEEEETT------------S
T ss_pred CEEEEEcCCC------------eEEEEECCCcceeEEE-c-C-CCC-ceEEEEECCCCCEEEEEeCC------------C
Confidence 6777776532 2445666655443221 0 1 111 1112233 245566666543 3
Q ss_pred cEEEEEcCCCceEE-ccCCCCCCCCCcceEEEEE-CCEEEEEccCCCC
Q 011542 268 DTIILDRLSAQWKR-LPIGNEPPPARAYHSMTCL-GSLYLLFGGFDGK 313 (483)
Q Consensus 268 ~v~~yd~~~~~W~~-v~~~~~~p~~R~~~~~~~~-~~~i~v~GG~~~~ 313 (483)
.+.+||+.+.+-.. +... .....+++.. ++..++.||.++.
T Consensus 271 ~v~iwd~~~~~~~~~~~~h-----~~~v~~v~~s~~g~~l~s~~~d~~ 313 (321)
T 3ow8_A 271 SVKVWDVGTRTCVHTFFDH-----QDQVWGVKYNGNGSKIVSVGDDQE 313 (321)
T ss_dssp CEEEEETTTTEEEEEECCC-----SSCEEEEEECTTSSEEEEEETTCC
T ss_pred cEEEEeCCCCEEEEEEcCC-----CCcEEEEEECCCCCEEEEEeCCCe
Confidence 47888887654322 1111 1112233332 4567777776653
No 47
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.31 E-value=0.22 Score=48.27 Aligned_cols=193 Identities=11% Similarity=0.052 Sum_probs=100.7
Q ss_pred eEEEECCc-EEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCCC
Q 011542 24 SAVNIGKS-KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRR 100 (483)
Q Consensus 24 ~~~~~~~~-~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~ 100 (483)
+++...++ .+|+.|+.+ ..+.++|+.+++....-.. +. .-..++.. +..||+.|..+
T Consensus 36 ~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~~~~~~~~~---------~~--~v~~~~~spdg~~l~~~~~~~---- 95 (391)
T 1l0q_A 36 GAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIATVPA---------GS--SPQGVAVSPDGKQVYVTNMAS---- 95 (391)
T ss_dssp EEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEEEEEC---------SS--SEEEEEECTTSSEEEEEETTT----
T ss_pred eEEECCCCCEEEEECCCC-----CeEEEEECCCCeEEEEEEC---------CC--CccceEECCCCCEEEEEECCC----
Confidence 34444444 466666543 4689999988876543321 11 22333333 34566665422
Q ss_pred CccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCc
Q 011542 101 LGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRC 179 (483)
Q Consensus 101 ~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~ 179 (483)
..+.+||+.+++-..... ......+++...++ .+|+.++.+ ..+++||+.+.+....-..+. .
T Consensus 96 -~~v~v~d~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~-----~ 159 (391)
T 1l0q_A 96 -STLSVIDTTSNTVAGTVK-----TGKSPLGLALSPDGKKLYVTNNGD-----KTVSVINTVTKAVINTVSVGR-----S 159 (391)
T ss_dssp -TEEEEEETTTTEEEEEEE-----CSSSEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECCS-----S
T ss_pred -CEEEEEECCCCeEEEEEe-----CCCCcceEEECCCCCEEEEEeCCC-----CEEEEEECCCCcEEEEEecCC-----C
Confidence 358999999887655432 11122333433343 577776542 468999999887665432111 1
Q ss_pred CceEEEe--CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEe-CC-EEEEEcCCCC
Q 011542 180 GHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSG-GH-YLLLFGGHGT 255 (483)
Q Consensus 180 ~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~-~~-~i~v~GG~~~ 255 (483)
-..++.. ++.+|+.++.. ..+..||+.+.+...... ....-.+++.. ++ .+++.+. ..
T Consensus 160 ~~~~~~~~dg~~l~~~~~~~------------~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~-~~ 221 (391)
T 1l0q_A 160 PKGIAVTPDGTKVYVANFDS------------MSISVIDTVTNSVIDTVK-----VEAAPSGIAVNPEGTKAYVTNV-DK 221 (391)
T ss_dssp EEEEEECTTSSEEEEEETTT------------TEEEEEETTTTEEEEEEE-----CSSEEEEEEECTTSSEEEEEEE-CS
T ss_pred cceEEECCCCCEEEEEeCCC------------CEEEEEECCCCeEEEEEe-----cCCCccceEECCCCCEEEEEec-Cc
Confidence 1233333 34677766532 335566877765443321 11122233332 33 4555442 11
Q ss_pred CCCCcccceeeCcEEEEEcCCCce
Q 011542 256 GGWLSRYDIYYNDTIILDRLSAQW 279 (483)
Q Consensus 256 ~~~~~~~~~~~~~v~~yd~~~~~W 279 (483)
..+.+.+||+.+.+-
T Consensus 222 ---------~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 222 ---------YFNTVSMIDTGTNKI 236 (391)
T ss_dssp ---------SCCEEEEEETTTTEE
T ss_pred ---------CCCcEEEEECCCCeE
Confidence 125689999887653
No 48
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.29 E-value=0.19 Score=54.30 Aligned_cols=225 Identities=11% Similarity=0.009 Sum_probs=118.8
Q ss_pred EECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEE
Q 011542 27 NIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFW 105 (483)
Q Consensus 27 ~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~ 105 (483)
...++.|++.. .+ .-+.+||+.+.++....... ..+. ..-++++.. ++.|++ |... ..++
T Consensus 370 ~d~~g~lWigt-~~-----~Gl~~~~~~~~~~~~~~~~~------~~~~-~~v~~i~~d~~g~lWi-gt~~-----~Gl~ 430 (781)
T 3v9f_A 370 DDGQGKLWIGT-DG-----GGINVFENGKRVAIYNKENR------ELLS-NSVLCSLKDSEGNLWF-GTYL-----GNIS 430 (781)
T ss_dssp ECTTSCEEEEE-BS-----SCEEEEETTEEEEECC-----------CCC-SBEEEEEECTTSCEEE-EETT-----EEEE
T ss_pred EcCCCCEEEEe-CC-----CcEEEEECCCCeEEEccCCC------CCCC-cceEEEEECCCCCEEE-Eecc-----CCEE
Confidence 33456677632 11 23788999887776653110 1111 223344444 567777 3321 2488
Q ss_pred EEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCC-CcCceEE
Q 011542 106 VLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPP-RCGHTAT 184 (483)
Q Consensus 106 ~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~-r~~~~~~ 184 (483)
+||+.++++...... .+ ....-.+++...++.|++.. ...+++||+.+++|+........... ..-.+++
T Consensus 431 ~~~~~~~~~~~~~~~-~~-~~~~v~~i~~d~~g~lwigt-------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 501 (781)
T 3v9f_A 431 YYNTRLKKFQIIELE-KN-ELLDVRVFYEDKNKKIWIGT-------HAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIA 501 (781)
T ss_dssp EECSSSCEEEECCST-TT-CCCCEEEEEECTTSEEEEEE-------TTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEE
T ss_pred EEcCCCCcEEEeccC-CC-CCCeEEEEEECCCCCEEEEE-------CCceEEEeCCCCeEEecccCcccccccceeEEEE
Confidence 999999999877531 11 11222333334456887743 14589999999999877521110111 1111222
Q ss_pred Ee-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCCCCCCCCccc
Q 011542 185 MV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLSRY 262 (483)
Q Consensus 185 ~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~ 262 (483)
.. +++|+|-.-. ..+.+||+.+.+++.......+|..... +++. .++.|++-..
T Consensus 502 ~d~~g~lWigt~~-------------~Gl~~~~~~~~~~~~~~~~~~l~~~~i~-~i~~d~~g~lWi~T~---------- 557 (781)
T 3v9f_A 502 QDSEGRFWIGTFG-------------GGVGIYTPDMQLVRKFNQYEGFCSNTIN-QIYRSSKGQMWLATG---------- 557 (781)
T ss_dssp ECTTCCEEEEESS-------------SCEEEECTTCCEEEEECTTTTCSCSCEE-EEEECTTSCEEEEET----------
T ss_pred EcCCCCEEEEEcC-------------CCEEEEeCCCCeEEEccCCCCCCCCeeE-EEEECCCCCEEEEEC----------
Confidence 22 5678774311 2345578888888877643233333222 2333 4567777432
Q ss_pred ceeeCcE-EEEEcCCCceEEccCCCCCCCCCcceEEEEE-CCEEEEEc
Q 011542 263 DIYYNDT-IILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFG 308 (483)
Q Consensus 263 ~~~~~~v-~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~-~~~i~v~G 308 (483)
+-+ .+||+.+.++.........|.... .+++.. ++.|++.+
T Consensus 558 ----~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 558 ----EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWAST 600 (781)
T ss_dssp ----TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEEC
T ss_pred ----CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEc
Confidence 225 888998888877654322333332 344443 46676654
No 49
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.27 E-value=0.3 Score=52.93 Aligned_cols=228 Identities=13% Similarity=0.024 Sum_probs=115.1
Q ss_pred EECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCC-CCCCcceeEEEEE-CCE-EEEEccccCCCCCcc
Q 011542 27 NIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQV-GPGPRAFHIAVAI-DCH-MFIFGGRFGSRRLGD 103 (483)
Q Consensus 27 ~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~-~p~~R~~h~~~~~-~~~-iyv~GG~~~~~~~~~ 103 (483)
...++.|+|- ... .-+.+||+.++++........ ... ......-.+++.. +++ |++ |... ..
T Consensus 364 ~d~~g~lWiG-t~~-----~Gl~~~~~~~~~~~~~~~~~~---~~~~~l~~~~v~~i~~d~~g~~lWi-gt~~-----~G 428 (795)
T 4a2l_A 364 EDKDKNLWIG-TND-----GGLNLYNPITQRFTSYTLQED---ESARGIGSNNIKAVYVDEKKSLVYI-GTHA-----GG 428 (795)
T ss_dssp ECTTSCEEEE-ESS-----SCEEEECTTTCCEEEECCC---------CCSCSCEEEEEEETTTTEEEE-EETT-----TE
T ss_pred ECCCCCEEEE-ECC-----CCeEEEcCCCCcEEEEecCCC---CcccCCCCccEEEEEEcCCCCEEEE-EeCc-----Cc
Confidence 3455667762 221 237889999988877642210 000 0111223444444 456 666 3321 23
Q ss_pred EEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCC--cC-
Q 011542 104 FWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPR--CG- 180 (483)
Q Consensus 104 ~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r--~~- 180 (483)
+++||+.++++..............-.+++...++.|++-.. +.+++||+.+++|+.+.... .+... ..
T Consensus 429 l~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~-~~~~~~~~~i 500 (795)
T 4a2l_A 429 LSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-------SALVRFNPEQRSFTTIEKEK-DGTPVVSKQI 500 (795)
T ss_dssp EEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-------SCEEEEETTTTEEEECCBCT-TCCBCCCCCE
T ss_pred eeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-------CceeEEeCCCCeEEEccccc-cccccCCceE
Confidence 889999999888776311111111222333334567777432 35899999999999875321 01111 11
Q ss_pred ceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEecc---CCCCCCCCeeeEEEE-eCCEEEEEcCCCC
Q 011542 181 HTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKL---PGQAPSSRCGHTITS-GGHYLLLFGGHGT 255 (483)
Q Consensus 181 ~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~---~g~~p~~r~~~~~~~-~~~~i~v~GG~~~ 255 (483)
.++... +++||+... ..+..||+.+..+ .... ....+.. .-.+++. .++.|++-..
T Consensus 501 ~~i~~d~~g~lWigt~--------------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~-~i~~i~~d~~g~lWigT~--- 561 (795)
T 4a2l_A 501 TTLFRDSHKRLWIGGE--------------EGLSVFKQEGLDI-QKASILPVSNVTKL-FTNCIYEASNGIIWVGTR--- 561 (795)
T ss_dssp EEEEECTTCCEEEEES--------------SCEEEEEEETTEE-EECCCSCSCGGGGS-CEEEEEECTTSCEEEEES---
T ss_pred EEEEECCCCCEEEEeC--------------CceEEEeCCCCeE-EEecCCCCCCCCCC-eeEEEEECCCCCEEEEeC---
Confidence 122222 567887542 2234457777766 3321 0011111 1223333 3567777332
Q ss_pred CCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEE-CCEEEEEc
Q 011542 256 GGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFG 308 (483)
Q Consensus 256 ~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~-~~~i~v~G 308 (483)
+.+++||+.+.++.........|... ..+++.- ++.|++.+
T Consensus 562 -----------~Gl~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t 603 (795)
T 4a2l_A 562 -----------EGFYCFNEKDKQIKRYNTTNGLPNNV-VYGILEDSFGRLWLST 603 (795)
T ss_dssp -----------SCEEEEETTTTEEEEECGGGTCSCSC-EEEEEECTTSCEEEEE
T ss_pred -----------CCceeECCCCCcEEEeCCCCCCchhh-eEEEEECCCCCEEEEc
Confidence 13889999999888765432223322 2333333 46677665
No 50
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.73 Score=43.60 Aligned_cols=110 Identities=9% Similarity=-0.147 Sum_probs=58.9
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~y 107 (483)
.++.+++.|+.+ ..+.+||..+.+-...-. ..... -.+++.. +++.++.|+.++ .+.+|
T Consensus 42 ~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~---------~h~~~-v~~~~~~~~~~~l~s~~~dg-----~i~iw 101 (369)
T 3zwl_B 42 KEGDLLFSCSKD-----SSASVWYSLNGERLGTLD---------GHTGT-IWSIDVDCFTKYCVTGSADY-----SIKLW 101 (369)
T ss_dssp TTSCEEEEEESS-----SCEEEEETTTCCEEEEEC---------CCSSC-EEEEEECTTSSEEEEEETTT-----EEEEE
T ss_pred CCCCEEEEEeCC-----CEEEEEeCCCchhhhhhh---------hcCCc-EEEEEEcCCCCEEEEEeCCC-----eEEEE
Confidence 456677777654 358899988776433221 11111 2222222 456667776543 58889
Q ss_pred ECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCC
Q 011542 108 DTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 108 d~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
|+.+.+-...-. ......+++...++..++.++.+.......+.+||+.+.
T Consensus 102 d~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~ 152 (369)
T 3zwl_B 102 DVSNGQCVATWK-----SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD 152 (369)
T ss_dssp ETTTCCEEEEEE-----CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred ECCCCcEEEEee-----cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence 998876544432 112223333444556666666542223345777776543
No 51
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.22 E-value=0.72 Score=42.34 Aligned_cols=220 Identities=12% Similarity=0.015 Sum_probs=115.4
Q ss_pred eeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCC
Q 011542 23 HSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRL 101 (483)
Q Consensus 23 h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~ 101 (483)
++++...++.+|+.... ...+.+||+. +......... ....-+.++.. ++.+|+.....
T Consensus 18 ~~i~~d~~g~l~v~~~~-----~~~v~~~d~~-~~~~~~~~~~---------~~~~~~~i~~~~~g~l~v~~~~~----- 77 (299)
T 2z2n_A 18 YGITVSDKGKVWITQHK-----ANMISCINLD-GKITEYPLPT---------PDAKVMCLTISSDGEVWFTENAA----- 77 (299)
T ss_dssp EEEEECTTSCEEEEETT-----TTEEEEECTT-CCEEEEECSS---------TTCCEEEEEECTTSCEEEEETTT-----
T ss_pred cceEECCCCCEEEEecC-----CCcEEEEcCC-CCeEEecCCc---------ccCceeeEEECCCCCEEEeCCCC-----
Confidence 44555566788886432 1358899998 7776654210 11223344443 56788764321
Q ss_pred ccEEEEECCCCeEEEeecCCCCC-CCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcC
Q 011542 102 GDFWVLDTDIWQWSELTSFGDLP-SPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (483)
Q Consensus 102 ~~~~~yd~~t~~W~~l~~~~~~p-~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~ 180 (483)
..+++||+. ++...+. .| ....-++++...++.+|+.... ...+++||+ +++...+.... ....-
T Consensus 78 ~~i~~~~~~-g~~~~~~----~~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~d~-~g~~~~~~~~~---~~~~~ 143 (299)
T 2z2n_A 78 NKIGRITKK-GIIKEYT----LPNPDSAPYGITEGPNGDIWFTEMN-----GNRIGRITD-DGKIREYELPN---KGSYP 143 (299)
T ss_dssp TEEEEECTT-SCEEEEE----CSSTTCCEEEEEECTTSCEEEEETT-----TTEEEEECT-TCCEEEEECSS---TTCCE
T ss_pred CeEEEECCC-CcEEEEe----CCCcCCCceeeEECCCCCEEEEecC-----CceEEEECC-CCCEEEecCCC---CCCCC
Confidence 248889986 5555554 22 1222334444456788887532 345889998 67766654211 11122
Q ss_pred ceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEe-CCEEEEEcCCCCCCC
Q 011542 181 HTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSG-GHYLLLFGGHGTGGW 258 (483)
Q Consensus 181 ~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~ 258 (483)
..++.. ++++|+..... ..+..||+ +.+......+.. ...-.++++. ++.+|+....
T Consensus 144 ~~i~~~~~g~l~v~~~~~------------~~i~~~~~-~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~----- 202 (299)
T 2z2n_A 144 SFITLGSDNALWFTENQN------------NAIGRITE-SGDITEFKIPTP---ASGPVGITKGNDDALWFVEII----- 202 (299)
T ss_dssp EEEEECTTSCEEEEETTT------------TEEEEECT-TCCEEEEECSST---TCCEEEEEECTTSSEEEEETT-----
T ss_pred ceEEEcCCCCEEEEeCCC------------CEEEEEcC-CCcEEEeeCCCC---CCcceeEEECCCCCEEEEccC-----
Confidence 333333 56888864211 34556687 666665532111 1122234443 4677775432
Q ss_pred CcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEE-CCEEEEEc
Q 011542 259 LSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFG 308 (483)
Q Consensus 259 ~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~-~~~i~v~G 308 (483)
.+.+.+||+ +.....+.... + ...-.+++.. ++.+|+..
T Consensus 203 -------~~~i~~~~~-~g~~~~~~~~~--~-~~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 203 -------GNKIGRITT-SGEITEFKIPT--P-NARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp -------TTEEEEECT-TCCEEEEECSS--T-TCCEEEEEECSTTCEEEEE
T ss_pred -------CceEEEECC-CCcEEEEECCC--C-CCCceeEEECCCCCEEEec
Confidence 245889998 66666543211 1 1122333333 46777764
No 52
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.18 E-value=0.99 Score=43.53 Aligned_cols=217 Identities=13% Similarity=0.102 Sum_probs=113.3
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCC--cEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFW 105 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~ 105 (483)
+.++.||+.... ..+++||+.++ .|..-..... ..............++.++.||+... ...++
T Consensus 51 v~~~~v~~~~~~------g~v~a~d~~tG~~~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~v~~~------~g~l~ 116 (376)
T 3q7m_A 51 LADNVVYAADRA------GLVKALNADDGKEIWSVSLAEKD--GWFSKEPALLSGGVTVSGGHVYIGSE------KAQVY 116 (376)
T ss_dssp EETTEEEEECTT------SEEEEEETTTCCEEEEEECCC-----CCSCCCCCEEEEEEEETTEEEEEET------TSEEE
T ss_pred EECCEEEEEcCC------CeEEEEEccCCceeeeecCcccc--ccccccCcccccCceEeCCEEEEEcC------CCEEE
Confidence 345788887642 36899999876 4765431100 00000022233445667888888543 13689
Q ss_pred EEECCCCe--EEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc--eEEeccCCCCCCCCcCc
Q 011542 106 VLDTDIWQ--WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSVPPPRCGH 181 (483)
Q Consensus 106 ~yd~~t~~--W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~i~~~~~~p~~r~~~ 181 (483)
++|+.+++ |+.-.. ... ..+.++. ++.+|+..+ ...++.||..+++ |+.-... +....+...
T Consensus 117 a~d~~tG~~~W~~~~~-----~~~-~~~p~~~-~~~v~v~~~------~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~ 182 (376)
T 3q7m_A 117 ALNTSDGTVAWQTKVA-----GEA-LSRPVVS-DGLVLIHTS------NGQLQALNEADGAVKWTVNLDM-PSLSLRGES 182 (376)
T ss_dssp EEETTTCCEEEEEECS-----SCC-CSCCEEE-TTEEEEECT------TSEEEEEETTTCCEEEEEECCC------CCCC
T ss_pred EEECCCCCEEEEEeCC-----Cce-EcCCEEE-CCEEEEEcC------CCeEEEEECCCCcEEEEEeCCC-CceeecCCC
Confidence 99998764 755321 111 1122233 557777432 2369999998876 8765411 111112223
Q ss_pred eEEEeCCEEEEEccCCCCCCcccceecccccccccCCCC--CeEEeccCCCCCCC-----C---eeeEEEEeCCEEEEEc
Q 011542 182 TATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETP--GWTQLKLPGQAPSS-----R---CGHTITSGGHYLLLFG 251 (483)
Q Consensus 182 ~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~--~W~~~~~~g~~p~~-----r---~~~~~~~~~~~i~v~G 251 (483)
+.+..++.+|+ |... ..+..+|+.+. .|+... ..|.. + .....++.++.+|+.+
T Consensus 183 ~~~~~~~~v~~-g~~~------------g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~ 246 (376)
T 3q7m_A 183 APTTAFGAAVV-GGDN------------GRVSAVLMEQGQMIWQQRI---SQATGSTEIDRLSDVDTTPVVVNGVVFALA 246 (376)
T ss_dssp CCEEETTEEEE-CCTT------------TEEEEEETTTCCEEEEEEC---CC-----------CCCCCCEEETTEEEEEC
T ss_pred CcEEECCEEEE-EcCC------------CEEEEEECCCCcEEEEEec---ccCCCCcccccccccCCCcEEECCEEEEEe
Confidence 44555777777 3211 23445576544 466543 11111 1 1223345678888754
Q ss_pred CCCCCCCCcccceeeCcEEEEEcCCC--ceEEccCCCCCCCCCcceEEEEECCEEEEEcc
Q 011542 252 GHGTGGWLSRYDIYYNDTIILDRLSA--QWKRLPIGNEPPPARAYHSMTCLGSLYLLFGG 309 (483)
Q Consensus 252 G~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG 309 (483)
. ...++.+|+.+. .|+.-.. ...+.+..++.+|+...
T Consensus 247 ~-------------~g~l~~~d~~tG~~~w~~~~~--------~~~~~~~~~~~l~~~~~ 285 (376)
T 3q7m_A 247 Y-------------NGNLTALDLRSGQIMWKRELG--------SVNDFIVDGNRIYLVDQ 285 (376)
T ss_dssp T-------------TSCEEEEETTTCCEEEEECCC--------CEEEEEEETTEEEEEET
T ss_pred c-------------CcEEEEEECCCCcEEeeccCC--------CCCCceEECCEEEEEcC
Confidence 2 134889998765 4665311 12345556888888753
No 53
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.16 E-value=0.39 Score=47.20 Aligned_cols=205 Identities=11% Similarity=-0.004 Sum_probs=99.0
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCCCCccEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRRLGDFWV 106 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~~~~~~~ 106 (483)
.++.+++.|+.+ ..+.+||+.+.+....-.. .. ..-..++.. ++.+|+.++.+ ..+.+
T Consensus 179 ~~~~~~~s~~~d-----~~v~~~d~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~~l~~~~~~~-----~~i~~ 238 (433)
T 3bws_A 179 EHNELWVSQMQA-----NAVHVFDLKTLAYKATVDL---------TG-KWSKILLYDPIRDLVYCSNWIS-----EDISV 238 (433)
T ss_dssp GGTEEEEEEGGG-----TEEEEEETTTCCEEEEEEC---------SS-SSEEEEEEETTTTEEEEEETTT-----TEEEE
T ss_pred CCCEEEEEECCC-----CEEEEEECCCceEEEEEcC---------CC-CCeeEEEEcCCCCEEEEEecCC-----CcEEE
Confidence 456777777643 3588999987654332211 11 112233333 44677766433 25899
Q ss_pred EECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCc---CCccEEEEECCCCceEEeccCCCCCCCCcCceE
Q 011542 107 LDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK---WLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTA 183 (483)
Q Consensus 107 yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~---~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~ 183 (483)
||+.+++...... ....-.+++...++..+++++..... .-..+.+||+.+.+-.... ..+. .-..+
T Consensus 239 ~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~---~~~~--~~~~~ 308 (433)
T 3bws_A 239 IDRKTKLEIRKTD-----KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI---GPPG--NKRHI 308 (433)
T ss_dssp EETTTTEEEEECC-----CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE---EEEE--CEEEE
T ss_pred EECCCCcEEEEec-----CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec---cCCC--CcceE
Confidence 9999887644332 22222333333455444455433221 1346889999887654432 1111 11123
Q ss_pred EEe--CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEe-CC-EEEEEcCCCCC---
Q 011542 184 TMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSG-GH-YLLLFGGHGTG--- 256 (483)
Q Consensus 184 ~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~-~~-~i~v~GG~~~~--- 256 (483)
+.. ++.+|+.++.. ..+..||+.+.+-...- +....-.+++.. ++ .+++.+.....
T Consensus 309 ~~~~~g~~l~~~~~~~------------~~v~v~d~~~~~~~~~~-----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 371 (433)
T 3bws_A 309 VSGNTENKIYVSDMCC------------SKIEVYDLKEKKVQKSI-----PVFDKPNTIALSPDGKYLYVSCRGPNHPTE 371 (433)
T ss_dssp EECSSTTEEEEEETTT------------TEEEEEETTTTEEEEEE-----ECSSSEEEEEECTTSSEEEEEECCCCCTTT
T ss_pred EECCCCCEEEEEecCC------------CEEEEEECCCCcEEEEe-----cCCCCCCeEEEcCCCCEEEEEecCCCcccc
Confidence 333 33788876542 34555677765433222 111112234433 33 45554432110
Q ss_pred CCCcccceeeCcEEEEEcCCCceEE
Q 011542 257 GWLSRYDIYYNDTIILDRLSAQWKR 281 (483)
Q Consensus 257 ~~~~~~~~~~~~v~~yd~~~~~W~~ 281 (483)
.... .......+++||+.+.+...
T Consensus 372 ~~~~-~g~~dg~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 372 GYLK-KGLVLGKVYVIDTTTDTVKE 395 (433)
T ss_dssp CTTS-CCSSCCEEEEEETTTTEEEE
T ss_pred cccc-ccccceEEEEEECCCCcEEE
Confidence 0000 00012479999998776544
No 54
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.15 E-value=1.2 Score=44.04 Aligned_cols=216 Identities=13% Similarity=0.077 Sum_probs=107.1
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLD 108 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd 108 (483)
-++..++.|+.+ ..+.+||..+.+-...-. .. ...-.++..++.+++.|+.++ .+.++|
T Consensus 141 ~d~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~---------~h--~~~v~~l~~~~~~l~sg~~dg-----~i~vwd 199 (435)
T 1p22_A 141 YDDQKIVSGLRD-----NTIKIWDKNTLECKRILT---------GH--TGSVLCLQYDERVIITGSSDS-----TVRVWD 199 (435)
T ss_dssp CCSSEEEEEESS-----SCEEEEESSSCCEEEEEC---------CC--SSCEEEEECCSSEEEEEETTS-----CEEEEE
T ss_pred ECCCEEEEEeCC-----CeEEEEeCCCCeEEEEEc---------CC--CCcEEEEEECCCEEEEEcCCC-----eEEEEE
Confidence 346677777754 358899988776433221 11 112233334777777777554 488899
Q ss_pred CCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEeCC
Q 011542 109 TDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK 188 (483)
Q Consensus 109 ~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~ 188 (483)
..+++-...-. .....-.++.+.+ ..++.|+.++ .+.+||..+..-..... ..........++..++
T Consensus 200 ~~~~~~~~~~~-----~h~~~v~~l~~~~-~~l~s~s~dg-----~i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~ 266 (435)
T 1p22_A 200 VNTGEMLNTLI-----HHCEAVLHLRFNN-GMMVTCSKDR-----SIAVWDMASPTDITLRR--VLVGHRAAVNVVDFDD 266 (435)
T ss_dssp SSSCCEEEEEC-----CCCSCEEEEECCT-TEEEEEETTS-----CEEEEECSSSSCCEEEE--EECCCSSCEEEEEEET
T ss_pred CCCCcEEEEEc-----CCCCcEEEEEEcC-CEEEEeeCCC-----cEEEEeCCCCCCceeee--EecCCCCcEEEEEeCC
Confidence 98876433221 1111222233344 4667777543 47888887654321100 0011111122223355
Q ss_pred EEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCc
Q 011542 189 RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYND 268 (483)
Q Consensus 189 ~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~ 268 (483)
..++.|+.. ..+..||+.+.+-...-. .... ...++..++.+++.|+.+ +.
T Consensus 267 ~~l~s~~~d------------g~i~vwd~~~~~~~~~~~--~~~~---~v~~~~~~~~~l~~g~~d------------g~ 317 (435)
T 1p22_A 267 KYIVSASGD------------RTIKVWNTSTCEFVRTLN--GHKR---GIACLQYRDRLVVSGSSD------------NT 317 (435)
T ss_dssp TEEEEEETT------------SEEEEEETTTCCEEEEEE--CCSS---CEEEEEEETTEEEEEETT------------SC
T ss_pred CEEEEEeCC------------CeEEEEECCcCcEEEEEc--CCCC---cEEEEEeCCCEEEEEeCC------------Ce
Confidence 555556542 234456766654332211 1111 112222345566666543 35
Q ss_pred EEEEEcCCCceEE-ccCCCCCCCCCcceEEEEECCEEEEEccCCCC
Q 011542 269 TIILDRLSAQWKR-LPIGNEPPPARAYHSMTCLGSLYLLFGGFDGK 313 (483)
Q Consensus 269 v~~yd~~~~~W~~-v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~~ 313 (483)
+.+||+.+..-.. +... ...-.++..++..++.|+.++.
T Consensus 318 i~iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~l~sg~~dg~ 357 (435)
T 1p22_A 318 IRLWDIECGACLRVLEGH------EELVRCIRFDNKRIVSGAYDGK 357 (435)
T ss_dssp EEEEETTTCCEEEEECCC------SSCEEEEECCSSEEEEEETTSC
T ss_pred EEEEECCCCCEEEEEeCC------cCcEEEEEecCCEEEEEeCCCc
Confidence 8889987654322 2221 1112333447788888887653
No 55
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.13 E-value=0.87 Score=42.44 Aligned_cols=194 Identities=10% Similarity=0.096 Sum_probs=92.4
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLD 108 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd 108 (483)
.++.+++.|+.+ ..+.+||..+.+-...-. ............-++.+++.|+.++ .+.++|
T Consensus 75 ~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~s~~~d~-----~i~iwd 135 (312)
T 4ery_A 75 SDSNLLVSASDD-----KTLKIWDVSSGKCLKTLK---------GHSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWD 135 (312)
T ss_dssp TTSSEEEEEETT-----SEEEEEETTTCCEEEEEE---------CCSSCEEEEEECSSSSEEEEEETTS-----CEEEEE
T ss_pred CCCCEEEEECCC-----CEEEEEECCCCcEEEEEc---------CCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEE
Confidence 455566666643 357788887765432211 0111111111222456677776553 478899
Q ss_pred CCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe-C
Q 011542 109 TDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV-E 187 (483)
Q Consensus 109 ~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~-~ 187 (483)
+.+++-...-. . ....-.+++...++.+++.|+.++ .+.+||+.+.+-...-.. .....-..+... +
T Consensus 136 ~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~ 203 (312)
T 4ery_A 136 VKTGKCLKTLP---A-HSDPVSAVHFNRDGSLIVSSSYDG-----LCRIWDTASGQCLKTLID---DDNPPVSFVKFSPN 203 (312)
T ss_dssp TTTCCEEEEEC---C-CSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEECC---SSCCCEEEEEECTT
T ss_pred CCCCEEEEEec---C-CCCcEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeeEEec---cCCCceEEEEECCC
Confidence 98765433211 0 111112223334557778887644 478899988765433211 111011122222 4
Q ss_pred CEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeE-EEEeCCEEEEEcCCCCCCCCcccceee
Q 011542 188 KRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHT-ITSGGHYLLLFGGHGTGGWLSRYDIYY 266 (483)
Q Consensus 188 ~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~~~~~~ 266 (483)
++.++.|+.. ..+..||..+..-...- .+.......... ....++.+++.|+.+
T Consensus 204 ~~~l~~~~~d------------~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sg~~d------------ 258 (312)
T 4ery_A 204 GKYILAATLD------------NTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSED------------ 258 (312)
T ss_dssp SSEEEEEETT------------TEEEEEETTTTEEEEEE-CSSCCSSSCCCEEEECSSSCEEEECCTT------------
T ss_pred CCEEEEEcCC------------CeEEEEECCCCcEEEEE-EecCCceEEEEEEEEeCCCcEEEEECCC------------
Confidence 5555666543 23445666655432221 111111111112 222456666666643
Q ss_pred CcEEEEEcCCCc
Q 011542 267 NDTIILDRLSAQ 278 (483)
Q Consensus 267 ~~v~~yd~~~~~ 278 (483)
+.+.+||+.+..
T Consensus 259 g~i~vwd~~~~~ 270 (312)
T 4ery_A 259 NLVYIWNLQTKE 270 (312)
T ss_dssp SCEEEEETTTCC
T ss_pred CEEEEEECCCch
Confidence 358889987664
No 56
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.10 E-value=0.49 Score=50.91 Aligned_cols=226 Identities=11% Similarity=0.064 Sum_probs=113.6
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWV 106 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~ 106 (483)
..++.|+|.. . .-+.+||+.++++........ ........-++++.. ++.|++ |...+ -+++
T Consensus 381 d~~g~lWigt--~-----~GL~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~i~~d~~g~lWi-gT~~~-----Gl~~ 443 (758)
T 3ott_A 381 DKEQQLWIAT--D-----GSINRYDYATRQFIHYNIVDN----TGTYNTNWTYYIFEDTAGQLWI-STCLG-----GIFV 443 (758)
T ss_dssp CTTSCEEEEE--T-----TEEEEEETTTTEEEEEEEECC----C--CBSSSEEEEEECTTSEEEE-EESSS-----CEEE
T ss_pred CCCCCEEEEe--C-----CcHhhcCcCCCcEEEeecCCC----cCCCCCceEEEEEEcCCCCEEE-EECCC-----ceEE
Confidence 3456677732 1 238899999999887653211 000011223344443 457777 33221 2778
Q ss_pred EECCC------CeEE---EeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCC
Q 011542 107 LDTDI------WQWS---ELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPP 177 (483)
Q Consensus 107 yd~~t------~~W~---~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~ 177 (483)
||+.+ ..+. .......++. ..-.+++...++.|+++||.. +.+++||+.+++++.+... .....
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~i~~i~~d~~g~lWi~~~t~-----~Gl~~~d~~~~~~~~~~~~-~~~~~ 516 (758)
T 3ott_A 444 VDKHKLMQSTSGQYIAEQNYSVHNGLSG-MFINQIIPDNEGNVWVLLYNN-----KGIDKINPRTREVTKLFAD-ELTGE 516 (758)
T ss_dssp EEHHHHHHCCSSEEECSEEECGGGTCSC-SCEEEEEECTTSCEEEEETTC-----SSEEEEETTTTEEEEECTT-TSCGG
T ss_pred EccccccccCCcceeccccccccccccc-ceeeeEEEcCCCCEEEEccCC-----CCcEEEeCCCCceEEecCC-CcCCC
Confidence 88653 2232 1111112222 122333444556899876643 3589999999999987521 11111
Q ss_pred CcCceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCC
Q 011542 178 RCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTG 256 (483)
Q Consensus 178 r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~ 256 (483)
..-.+++.. ++.|++-. . ..+..||+.+..++..... .+|.. .-.+++..++.|++...
T Consensus 517 ~~~~~i~~d~~g~lWigt-~-------------~Gl~~~~~~~~~~~~~~~~-gl~~~-~i~~i~~~~g~lWi~t~---- 576 (758)
T 3ott_A 517 KSPNYLLCDEDGLLWVGF-H-------------GGVMRINPKDESQQSISFG-SFSNN-EILSMTCVKNSIWVSTT---- 576 (758)
T ss_dssp GCEEEEEECTTSCEEEEE-T-------------TEEEEECC--CCCCBCCCC-C---C-CEEEEEEETTEEEEEES----
T ss_pred cccceEEECCCCCEEEEe-c-------------CceEEEecCCCceEEeccc-CCCcc-ceEEEEECCCCEEEECC----
Confidence 111122222 56888643 1 2345568877776655321 23322 22344445788888542
Q ss_pred CCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEE-CCEEEEEccCCC
Q 011542 257 GWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFGGFDG 312 (483)
Q Consensus 257 ~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~-~~~i~v~GG~~~ 312 (483)
+.+.+||+.+.+...... |...+. +++.. .+.-+.|||.+|
T Consensus 577 ----------~Gl~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~G~l~fG~~~G 618 (758)
T 3ott_A 577 ----------NGLWIIDRKTMDARQQNM----TNKRFT-SLLFDPKEDCVYLGGADG 618 (758)
T ss_dssp ----------SCEEEEETTTCCEEEC------CCCCCS-EEEEETTTTEEEEECBSE
T ss_pred ----------CCeEEEcCCCceeEEecC----CCCcee-eeEEECCCCcEEEecCCc
Confidence 338899999888765432 222333 33333 344456677665
No 57
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.07 E-value=0.86 Score=41.83 Aligned_cols=220 Identities=10% Similarity=-0.045 Sum_probs=112.6
Q ss_pred eEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCc
Q 011542 24 SAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLG 102 (483)
Q Consensus 24 ~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~ 102 (483)
.++...++.+|+..... ..+++||+. ++...+... .....-+.++.. ++++|+.... ..
T Consensus 61 ~i~~~~~g~l~v~~~~~-----~~i~~~~~~-g~~~~~~~~---------~~~~~~~~i~~~~~g~l~v~~~~-----~~ 120 (299)
T 2z2n_A 61 CLTISSDGEVWFTENAA-----NKIGRITKK-GIIKEYTLP---------NPDSAPYGITEGPNGDIWFTEMN-----GN 120 (299)
T ss_dssp EEEECTTSCEEEEETTT-----TEEEEECTT-SCEEEEECS---------STTCCEEEEEECTTSCEEEEETT-----TT
T ss_pred eEEECCCCCEEEeCCCC-----CeEEEECCC-CcEEEEeCC---------CcCCCceeeEECCCCCEEEEecC-----Cc
Confidence 34444567777765321 347888886 455444311 011223444444 5688886432 23
Q ss_pred cEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCce
Q 011542 103 DFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHT 182 (483)
Q Consensus 103 ~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~ 182 (483)
.++++|+ +++....... .....-.+++...++.+|+... ....+++||+ +++...+...... ..-..
T Consensus 121 ~i~~~d~-~g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~-----~~~~i~~~~~-~g~~~~~~~~~~~---~~~~~ 187 (299)
T 2z2n_A 121 RIGRITD-DGKIREYELP---NKGSYPSFITLGSDNALWFTEN-----QNNAIGRITE-SGDITEFKIPTPA---SGPVG 187 (299)
T ss_dssp EEEEECT-TCCEEEEECS---STTCCEEEEEECTTSCEEEEET-----TTTEEEEECT-TCCEEEEECSSTT---CCEEE
T ss_pred eEEEECC-CCCEEEecCC---CCCCCCceEEEcCCCCEEEEeC-----CCCEEEEEcC-CCcEEEeeCCCCC---Cccee
Confidence 5889999 6666655421 1122233444445668888652 1346899999 7887765311111 11123
Q ss_pred EEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCCCCCCCCc
Q 011542 183 ATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLS 260 (483)
Q Consensus 183 ~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~ 260 (483)
++.. ++++|+..... ..+..||+ +..+.....+. + ...-.++++ .++.+|+....
T Consensus 188 i~~~~~g~l~v~~~~~------------~~i~~~~~-~g~~~~~~~~~--~-~~~~~~i~~~~~g~l~v~~~~------- 244 (299)
T 2z2n_A 188 ITKGNDDALWFVEIIG------------NKIGRITT-SGEITEFKIPT--P-NARPHAITAGAGIDLWFTEWG------- 244 (299)
T ss_dssp EEECTTSSEEEEETTT------------TEEEEECT-TCCEEEEECSS--T-TCCEEEEEECSTTCEEEEETT-------
T ss_pred EEECCCCCEEEEccCC------------ceEEEECC-CCcEEEEECCC--C-CCCceeEEECCCCCEEEeccC-------
Confidence 3333 46788865321 34556688 66666554211 1 112234444 35577775421
Q ss_pred ccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEc
Q 011542 261 RYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFG 308 (483)
Q Consensus 261 ~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~G 308 (483)
.+.+.+||+ +.....+..... ...-.+++.-++.+|+..
T Consensus 245 -----~~~i~~~d~-~g~~~~~~~~~~---~~~~~~i~~~~g~l~v~~ 283 (299)
T 2z2n_A 245 -----ANKIGRLTS-NNIIEEYPIQIK---SAEPHGICFDGETIWFAM 283 (299)
T ss_dssp -----TTEEEEEET-TTEEEEEECSSS---SCCEEEEEECSSCEEEEE
T ss_pred -----CceEEEECC-CCceEEEeCCCC---CCccceEEecCCCEEEEe
Confidence 145889998 445544432111 112233334456777764
No 58
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.04 E-value=0.5 Score=44.17 Aligned_cols=222 Identities=14% Similarity=0.047 Sum_probs=106.5
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEe-eeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQ-PECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFW 105 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~ 105 (483)
..++.+++.|+ + ..+.+||..+..... +..... ......-.+++.. +++.++.|+.++ .+.
T Consensus 60 ~~~~~~l~~~~-d-----g~i~iw~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~ 122 (337)
T 1gxr_A 60 SNPTRHVYTGG-K-----GCVKVWDISHPGNKSPVSQLDC------LNRDNYIRSCKLLPDGCTLIVGGEAS-----TLS 122 (337)
T ss_dssp CSSSSEEEEEC-B-----SEEEEEETTSTTCCSCSEEEEC------SCTTSBEEEEEECTTSSEEEEEESSS-----EEE
T ss_pred ecCCcEEEEcC-C-----CeEEEEECCCCCceeeeecccc------cCCCCcEEEEEEcCCCCEEEEEcCCC-----cEE
Confidence 45566777776 3 358889987754211 111000 0111112222222 456666666442 588
Q ss_pred EEECCCCeEEEeecCCCCCCCCc-ccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEE
Q 011542 106 VLDTDIWQWSELTSFGDLPSPRD-FAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTAT 184 (483)
Q Consensus 106 ~yd~~t~~W~~l~~~~~~p~~r~-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~ 184 (483)
+||+.+.+...... ...... ..+++...++..++.|+.++ .+.+||+.+.+....- ..... .-.++.
T Consensus 123 ~~d~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~v~~~d~~~~~~~~~~---~~~~~-~i~~~~ 190 (337)
T 1gxr_A 123 IWDLAAPTPRIKAE---LTSSAPACYALAISPDSKVCFSCCSDG-----NIAVWDLHNQTLVRQF---QGHTD-GASCID 190 (337)
T ss_dssp EEECCCC--EEEEE---EECSSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEE---CCCSS-CEEEEE
T ss_pred EEECCCCCcceeee---cccCCCceEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCceeeee---ecccC-ceEEEE
Confidence 99998877544332 111111 22333334556777777543 4889999887654432 11111 112223
Q ss_pred Ee-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCCCCCCCCccc
Q 011542 185 MV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLSRY 262 (483)
Q Consensus 185 ~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~ 262 (483)
.. ++..++.|+.. ..+..||+.+.+-.... ..+.+ -.+++. .++..+++|+.+
T Consensus 191 ~~~~~~~l~~~~~d------------g~i~~~d~~~~~~~~~~---~~~~~--v~~~~~s~~~~~l~~~~~~-------- 245 (337)
T 1gxr_A 191 ISNDGTKLWTGGLD------------NTVRSWDLREGRQLQQH---DFTSQ--IFSLGYCPTGEWLAVGMES-------- 245 (337)
T ss_dssp ECTTSSEEEEEETT------------SEEEEEETTTTEEEEEE---ECSSC--EEEEEECTTSSEEEEEETT--------
T ss_pred ECCCCCEEEEEecC------------CcEEEEECCCCceEeee---cCCCc--eEEEEECCCCCEEEEEcCC--------
Confidence 33 45566666542 23455676655433222 11111 123333 345566666533
Q ss_pred ceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEE-CCEEEEEccCCC
Q 011542 263 DIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFGGFDG 312 (483)
Q Consensus 263 ~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~-~~~i~v~GG~~~ 312 (483)
..+.+||+.+..-..+... .....++... ++.+++.|+.++
T Consensus 246 ----~~i~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg 287 (337)
T 1gxr_A 246 ----SNVEVLHVNKPDKYQLHLH-----ESCVLSLKFAYCGKWFVSTGKDN 287 (337)
T ss_dssp ----SCEEEEETTSSCEEEECCC-----SSCEEEEEECTTSSEEEEEETTS
T ss_pred ----CcEEEEECCCCCeEEEcCC-----ccceeEEEECCCCCEEEEecCCC
Confidence 3488899877654333222 1112233332 466777777554
No 59
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=96.02 E-value=0.34 Score=51.67 Aligned_cols=219 Identities=12% Similarity=0.051 Sum_probs=112.1
Q ss_pred EECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCC--------
Q 011542 27 NIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGS-------- 98 (483)
Q Consensus 27 ~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~-------- 98 (483)
...|++.++|+...++.....++++|..+++........ .........-+++.++++.....
T Consensus 132 ~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~----------~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 132 FSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER----------VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp ECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE----------ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred ECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC----------cccceEEEEeCCCEEEEEEECCccccccccc
Confidence 346677777765444433458999999999887643210 11111222224444444443322
Q ss_pred ---CCCccEEEEECCCCeEE--EeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCC------C--ce
Q 011542 99 ---RRLGDFWVLDTDIWQWS--ELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTIS------L--EW 165 (483)
Q Consensus 99 ---~~~~~~~~yd~~t~~W~--~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t------~--~W 165 (483)
.....++++++.+.+.. .+.. ....+........-.+++..+++...+....+.++.+|..+ . .+
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~--~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAE--FPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEEC--CTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccCCCCEEEEEECCCCcccceEEec--cCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 22345888998876532 2221 11112223334444455544444432222357899999876 4 68
Q ss_pred EEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCC---CeEEeccCCCCCCCCeeeEEEE
Q 011542 166 MQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETP---GWTQLKLPGQAPSSRCGHTITS 242 (483)
Q Consensus 166 ~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~---~W~~~~~~g~~p~~r~~~~~~~ 242 (483)
..+. ....... ......++.||+.+...... ..+..+|+++. .|+.+.. ......-..+..
T Consensus 280 ~~l~---~~~~~~~-~~~s~dg~~l~~~s~~~~~~---------~~l~~~d~~~~~~~~~~~l~~---~~~~~~~~~~~~ 343 (710)
T 2xdw_A 280 VKLI---DNFEGEY-DYVTNEGTVFTFKTNRHSPN---------YRLINIDFTDPEESKWKVLVP---EHEKDVLEWVAC 343 (710)
T ss_dssp EEEE---CSSSSCE-EEEEEETTEEEEEECTTCTT---------CEEEEEETTSCCGGGCEEEEC---CCSSCEEEEEEE
T ss_pred EEee---CCCCcEE-EEEeccCCEEEEEECCCCCC---------CEEEEEeCCCCCcccceeccC---CCCCCeEEEEEE
Confidence 8876 2111111 12222367888887543211 23444576654 5887762 111112223334
Q ss_pred e-CCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCc-eEEcc
Q 011542 243 G-GHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ-WKRLP 283 (483)
Q Consensus 243 ~-~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~-W~~v~ 283 (483)
. ++.+++....+. ...++++|+.+.+ ...+.
T Consensus 344 ~~~~~lv~~~~~~g----------~~~l~~~~~~~g~~~~~l~ 376 (710)
T 2xdw_A 344 VRSNFLVLCYLHDV----------KNTLQLHDLATGALLKIFP 376 (710)
T ss_dssp ETTTEEEEEEEETT----------EEEEEEEETTTCCEEEEEC
T ss_pred EcCCEEEEEEEECC----------EEEEEEEECCCCCEEEecC
Confidence 4 677777654332 3568999985543 45543
No 60
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=95.98 E-value=0.88 Score=43.03 Aligned_cols=177 Identities=10% Similarity=-0.062 Sum_probs=86.6
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCce
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEW 165 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 165 (483)
++.+++.|+.++ .+.++|..+++-...-. ..+. ...+++...++..++.|+.+ ..+.+||..+.+-
T Consensus 91 ~~~~l~s~s~D~-----~i~lWd~~~~~~~~~~~--~~~~--~~~~~~~spdg~~l~~g~~d-----g~v~i~~~~~~~~ 156 (321)
T 3ow8_A 91 TLPIAASSSLDA-----HIRLWDLENGKQIKSID--AGPV--DAWTLAFSPDSQYLATGTHV-----GKVNIFGVESGKK 156 (321)
T ss_dssp SSSEEEEEETTS-----EEEEEETTTTEEEEEEE--CCTT--CCCCEEECTTSSEEEEECTT-----SEEEEEETTTCSE
T ss_pred CCCEEEEEeCCC-----cEEEEECCCCCEEEEEe--CCCc--cEEEEEECCCCCEEEEEcCC-----CcEEEEEcCCCce
Confidence 445666666543 47888998876433221 1111 12234444566777777753 3477888877654
Q ss_pred EEeccCCCCCCCCcCceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-e
Q 011542 166 MQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-G 243 (483)
Q Consensus 166 ~~i~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~ 243 (483)
...- .. ....-.+++.. ++++++.|+.. ..+..||+.+.+-...- . ....+ . .+++. -
T Consensus 157 ~~~~---~~-~~~~v~~~~~spdg~~lasg~~d------------g~i~iwd~~~~~~~~~~-~-~h~~~-v-~~l~~sp 216 (321)
T 3ow8_A 157 EYSL---DT-RGKFILSIAYSPDGKYLASGAID------------GIINIFDIATGKLLHTL-E-GHAMP-I-RSLTFSP 216 (321)
T ss_dssp EEEE---EC-SSSCEEEEEECTTSSEEEEEETT------------SCEEEEETTTTEEEEEE-C-CCSSC-C-CEEEECT
T ss_pred eEEe---cC-CCceEEEEEECCCCCEEEEEcCC------------CeEEEEECCCCcEEEEE-c-ccCCc-e-eEEEEcC
Confidence 3321 00 11111222333 55666767653 23445677665432221 1 11111 1 12333 3
Q ss_pred CCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEE-ccCCCCCCCCCcceEEEEE-CCEEEEEccCCCC
Q 011542 244 GHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKR-LPIGNEPPPARAYHSMTCL-GSLYLLFGGFDGK 313 (483)
Q Consensus 244 ~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~-v~~~~~~p~~R~~~~~~~~-~~~i~v~GG~~~~ 313 (483)
++.+++.|+.+ ..+.+||+.+..... +... .....+++.. ++.+++.|+.++.
T Consensus 217 d~~~l~s~s~d------------g~i~iwd~~~~~~~~~~~~h-----~~~v~~~~~sp~~~~l~s~s~D~~ 271 (321)
T 3ow8_A 217 DSQLLVTASDD------------GYIKIYDVQHANLAGTLSGH-----ASWVLNVAFCPDDTHFVSSSSDKS 271 (321)
T ss_dssp TSCEEEEECTT------------SCEEEEETTTCCEEEEECCC-----SSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCEEEEEcCC------------CeEEEEECCCcceeEEEcCC-----CCceEEEEECCCCCEEEEEeCCCc
Confidence 55666767643 347888987655432 2211 1111222222 5667778876653
No 61
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=95.92 E-value=0.68 Score=45.56 Aligned_cols=106 Identities=13% Similarity=0.133 Sum_probs=49.6
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLD 108 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd 108 (483)
.++..++.|+.+ ..+.++|..+++-.... .....+ ..++..++.+++.|+.++ .+..+|
T Consensus 157 pdg~~lasgs~D-----g~v~iWd~~~~~~~~~~---------~~h~~~--v~~~s~~~~~l~sgs~d~-----~i~~~d 215 (420)
T 4gga_A 157 KEGNYLAVGTSS-----AEVQLWDVQQQKRLRNM---------TSHSAR--VGSLSWNSYILSSGSRSG-----HIHHHD 215 (420)
T ss_dssp TTSSEEEEEETT-----SCEEEEETTTTEEEEEE---------CCCSSC--EEEEEEETTEEEEEETTS-----EEEEEE
T ss_pred CCCCEEEEEECC-----CeEEEEEcCCCcEEEEE---------eCCCCc--eEEEeeCCCEEEEEeCCC-----ceeEee
Confidence 444555555543 24677787776533221 111222 233444666777776543 366777
Q ss_pred CCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCC
Q 011542 109 TDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 109 ~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
..+......... . ............++..++.|+.++ .+.++|..+.
T Consensus 216 ~~~~~~~~~~~~--~-h~~~~~~~~~~~~g~~l~s~~~D~-----~v~i~~~~~~ 262 (420)
T 4gga_A 216 VRVAEHHVATLS--G-HSQEVCGLRWAPDGRHLASGGNDN-----LVNVWPSAPG 262 (420)
T ss_dssp TTSSSCEEEEEE--C-CSSCEEEEEECTTSSEEEEEETTS-----CEEEEESSCC
T ss_pred ecccceeeEEec--c-cccceeeeeecCCCCeeeeeeccc-----cceEEeeccc
Confidence 655433221110 0 111112222233446666666543 3666776654
No 62
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.14 Score=55.18 Aligned_cols=109 Identities=7% Similarity=0.036 Sum_probs=63.4
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE-EC--CEEEEEccccCCCCCccEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA-ID--CHMFIFGGRFGSRRLGDFW 105 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~--~~iyv~GG~~~~~~~~~~~ 105 (483)
.++..++.||.+ ..+.+||....++..+..... . ...-.+++. -+ +..++.|+.++ .+.
T Consensus 19 ~dg~~latg~~d-----g~I~vwd~~~~~~~~~~~l~~-------h-~~~V~~l~~s~~~~~~~l~s~s~Dg-----~I~ 80 (753)
T 3jro_A 19 YYGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTG-------H-EGPVWRVDWAHPKFGTILASCSYDG-----KVL 80 (753)
T ss_dssp SSSCCEEEEETT-----TEEEEEEEETTEEEEEEEECC-------C-SSCEEEEEECCTTSCSEEEEEETTS-----CEE
T ss_pred CCCCeEEEEECC-----CcEEEEecCCCCCccceeccC-------C-cCceEEEEecCCCCCCEEEEEeCCC-----eEE
Confidence 456677777754 358888888777777654421 1 111222222 23 56777777554 478
Q ss_pred EEECCCCeEEEeecCCCCCCCCc-ccEEEEECC--cEEEEEecCCCCcCCccEEEEECCCC
Q 011542 106 VLDTDIWQWSELTSFGDLPSPRD-FAAASAIGN--RKIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 106 ~yd~~t~~W~~l~~~~~~p~~r~-~~~~~~~~~--~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
++|+.++.|..+.. ...... -.+++...+ +.+++.|+.++ .+.+||+.+.
T Consensus 81 vwd~~~~~~~~~~~---~~~h~~~V~~v~~sp~~~~~~l~sgs~dg-----~I~vwdl~~~ 133 (753)
T 3jro_A 81 IWKEENGRWSQIAV---HAVHSASVNSVQWAPHEYGPLLLVASSDG-----KVSVVEFKEN 133 (753)
T ss_dssp EEEEETTEEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETTS-----EEEEEECCSS
T ss_pred EEECCCCccccccc---ccCCCCCeEEEEECCCCCCCEEEEEeCCC-----cEEEEEeecC
Confidence 89998888876654 222122 222333333 56788887544 4777887765
No 63
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=95.88 E-value=1.3 Score=42.66 Aligned_cols=111 Identities=7% Similarity=-0.093 Sum_probs=56.0
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWV 106 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~ 106 (483)
..++.+++.|+.++ .+.+||.....-..+.. . ...-.+++.. ++..++.|+.++ .+.+
T Consensus 117 s~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~----------~-~~~v~~~~~~~~~~~l~~~~~d~-----~i~i 175 (425)
T 1r5m_A 117 SHDGNSIVTGVENG-----ELRLWNKTGALLNVLNF----------H-RAPIVSVKWNKDGTHIISMDVEN-----VTIL 175 (425)
T ss_dssp CTTSSEEEEEETTS-----CEEEEETTSCEEEEECC----------C-CSCEEEEEECTTSSEEEEEETTC-----CEEE
T ss_pred cCCCCEEEEEeCCC-----eEEEEeCCCCeeeeccC----------C-CccEEEEEECCCCCEEEEEecCC-----eEEE
Confidence 45667777777543 47888854443333321 1 1112223332 455666666443 4788
Q ss_pred EECCCCeEEEeecCCCCC-----------CCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCce
Q 011542 107 LDTDIWQWSELTSFGDLP-----------SPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEW 165 (483)
Q Consensus 107 yd~~t~~W~~l~~~~~~p-----------~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 165 (483)
||..+++-...-.....+ ......+++...++. +++|+.+ ..+.+||+.+.+-
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----g~i~~~d~~~~~~ 239 (425)
T 1r5m_A 176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPK-----GAIFVYQITEKTP 239 (425)
T ss_dssp EETTTTEEEEEECCC---------------CCCBSCCEEEETTE-EEEECGG-----GCEEEEETTCSSC
T ss_pred EECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCC-----CeEEEEEcCCCce
Confidence 999877654432211111 000023333344544 5666543 4588999887643
No 64
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=95.76 E-value=1.3 Score=41.61 Aligned_cols=209 Identities=10% Similarity=-0.030 Sum_probs=101.6
Q ss_pred EEEECC-cEEEEEcccCC-CccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCC
Q 011542 25 AVNIGK-SKVVVFGGLVD-KRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRL 101 (483)
Q Consensus 25 ~~~~~~-~~l~v~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~ 101 (483)
++...+ +.+|+...... ......++++|+.+.+-...-..+ .+....++.- ++.+|+.+..+
T Consensus 46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~----------~~~~~~~~s~dg~~l~v~~~~~----- 110 (353)
T 3vgz_A 46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND----------LKPFGATINNTTQTLWFGNTVN----- 110 (353)
T ss_dssp EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES----------SCCCSEEEETTTTEEEEEETTT-----
T ss_pred eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC----------CCcceEEECCCCCEEEEEecCC-----
Confidence 333333 35666553211 112457999999888654432221 1111222232 34588776532
Q ss_pred ccEEEEECCCCeEEEeecCCCCCC-----CCcccEEEEECC-cEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCC
Q 011542 102 GDFWVLDTDIWQWSELTSFGDLPS-----PRDFAAASAIGN-RKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVP 175 (483)
Q Consensus 102 ~~~~~yd~~t~~W~~l~~~~~~p~-----~r~~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p 175 (483)
+.++++|+.+++-...-..+.... +..-+.++...+ +.+|+.+... ...++++|+.+.+-...- +.
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----~~~i~~~d~~~~~~~~~~---~~- 182 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK----ESVIWVVDGGNIKLKTAI---QN- 182 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS----SCEEEEEETTTTEEEEEE---CC-
T ss_pred CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC----CceEEEEcCCCCceEEEe---cC-
Confidence 368999998876533222111111 111233444333 3677766321 345899999887654432 11
Q ss_pred CCCcCceEEEe--CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE--eCCEEEEEc
Q 011542 176 PPRCGHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS--GGHYLLLFG 251 (483)
Q Consensus 176 ~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~--~~~~i~v~G 251 (483)
....-+.++.. ++.+|+... . ..+..+|+.+.+-......+..........+++ .++.+|+..
T Consensus 183 ~~~~~~~~~~s~dg~~l~~~~~---~----------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 249 (353)
T 3vgz_A 183 TGKMSTGLALDSEGKRLYTTNA---D----------GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITD 249 (353)
T ss_dssp CCTTCCCCEEETTTTEEEEECT---T----------SEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEE
T ss_pred CCCccceEEECCCCCEEEEEcC---C----------CeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEe
Confidence 11112233343 446777543 1 234456877665433221111111112223333 355677754
Q ss_pred CCCCCCCCcccceeeCcEEEEEcCCCceEE
Q 011542 252 GHGTGGWLSRYDIYYNDTIILDRLSAQWKR 281 (483)
Q Consensus 252 G~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 281 (483)
.. .+.+++||+.+.+...
T Consensus 250 ~~------------~~~v~~~d~~~~~~~~ 267 (353)
T 3vgz_A 250 SK------------AAEVLVVDTRNGNILA 267 (353)
T ss_dssp SS------------SSEEEEEETTTCCEEE
T ss_pred CC------------CCEEEEEECCCCcEEE
Confidence 32 2569999998776544
No 65
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=95.64 E-value=0.32 Score=44.35 Aligned_cols=213 Identities=8% Similarity=-0.041 Sum_probs=102.1
Q ss_pred EEECCcEEEEEcccCCCccccceEEEEcCC-CcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccE
Q 011542 26 VNIGKSKVVVFGGLVDKRFLSDVVVYDIDN-KLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDF 104 (483)
Q Consensus 26 ~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~ 104 (483)
....+++.+++++ ...++++|+.+ .+...+... ............-+++.+++++.... ....+
T Consensus 48 ~~spdg~~l~~~~------~~~i~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~l 112 (297)
T 2ojh_A 48 NWSPDGKYLLLNS------EGLLYRLSLAGDPSPEKVDTG--------FATICNNDHGISPDGALYAISDKVEF-GKSAI 112 (297)
T ss_dssp EECTTSSEEEEEE------TTEEEEEESSSCCSCEECCCT--------TCCCBCSCCEECTTSSEEEEEECTTT-SSCEE
T ss_pred EECCCCCEEEEEc------CCeEEEEeCCCCCCceEeccc--------cccccccceEECCCCCEEEEEEeCCC-CcceE
Confidence 3345566666654 13699999998 776655421 01112222222335555555553321 34578
Q ss_pred EEEECCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceE
Q 011542 105 WVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTA 183 (483)
Q Consensus 105 ~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~ 183 (483)
|.+|..+..-..+.. . .. ...++...++ .|++.++.++ ...+|.++..+.....+. ..+.. -..+
T Consensus 113 ~~~~~~~~~~~~~~~---~-~~--~~~~~~spdg~~l~~~~~~~~---~~~l~~~~~~~~~~~~~~---~~~~~--~~~~ 178 (297)
T 2ojh_A 113 YLLPSTGGTPRLMTK---N-LP--SYWHGWSPDGKSFTYCGIRDQ---VFDIYSMDIDSGVETRLT---HGEGR--NDGP 178 (297)
T ss_dssp EEEETTCCCCEECCS---S-SS--EEEEEECTTSSEEEEEEEETT---EEEEEEEETTTCCEEECC---CSSSC--EEEE
T ss_pred EEEECCCCceEEeec---C-CC--ccceEECCCCCEEEEEECCCC---ceEEEEEECCCCcceEcc---cCCCc--cccc
Confidence 999988777555542 1 11 2223333344 4555554432 236788888888777664 22111 1222
Q ss_pred EEe-CC-EEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCCCCCCCCc
Q 011542 184 TMV-EK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLS 260 (483)
Q Consensus 184 ~~~-~~-~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~ 260 (483)
... ++ .|++.+..... ..++.+++.......+. ... .....+.. -+++.+++++...... .
T Consensus 179 ~~s~dg~~l~~~~~~~~~----------~~i~~~~~~~~~~~~~~---~~~--~~~~~~~~s~dg~~l~~~~~~~~~~-~ 242 (297)
T 2ojh_A 179 DYSPDGRWIYFNSSRTGQ----------MQIWRVRVDGSSVERIT---DSA--YGDWFPHPSPSGDKVVFVSYDADVF-D 242 (297)
T ss_dssp EECTTSSEEEEEECTTSS----------CEEEEEETTSSCEEECC---CCS--EEEEEEEECTTSSEEEEEEEETTCC-S
T ss_pred eECCCCCEEEEEecCCCC----------ccEEEECCCCCCcEEEe---cCC--cccCCeEECCCCCEEEEEEcCCCCC-c
Confidence 232 44 45544432221 22334465555555544 111 11122222 3444444444322110 0
Q ss_pred ccceeeCcEEEEEcCCCceEEcc
Q 011542 261 RYDIYYNDTIILDRLSAQWKRLP 283 (483)
Q Consensus 261 ~~~~~~~~v~~yd~~~~~W~~v~ 283 (483)
........++++|+.+.+...+.
T Consensus 243 ~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 243 HPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp CCSSEEEEEEEEETTSCSCEEEE
T ss_pred ccccCceEEEEEecCCCCceeee
Confidence 00012356999999887766554
No 66
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=95.60 E-value=1.6 Score=41.16 Aligned_cols=210 Identities=10% Similarity=0.008 Sum_probs=102.1
Q ss_pred eEEEECCc-EEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCCC
Q 011542 24 SAVNIGKS-KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRR 100 (483)
Q Consensus 24 ~~~~~~~~-~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~ 100 (483)
.++...++ .+|+.+..+ +.+++||+.+++-...-..+.+.. +....+..-+.++.. ++.+|+.+...
T Consensus 93 ~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~---- 162 (353)
T 3vgz_A 93 GATINNTTQTLWFGNTVN-----SAVTAIDAKTGEVKGRLVLDDRKR-TEEVRPLQPRELVADDATNTVYISGIGK---- 162 (353)
T ss_dssp SEEEETTTTEEEEEETTT-----TEEEEEETTTCCEEEEEESCCCCC-CSSCCCCEEEEEEEETTTTEEEEEEESS----
T ss_pred eEEECCCCCEEEEEecCC-----CEEEEEeCCCCeeEEEEecCCCcc-ccccCCCCCceEEECCCCCEEEEEecCC----
Confidence 34444444 466655432 368999998876533222211000 000011112334443 45677765322
Q ss_pred CccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECC-cEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCc
Q 011542 101 LGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGN-RKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRC 179 (483)
Q Consensus 101 ~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~ 179 (483)
-..++++|+.+.+-...-+ . .....+.++...+ +.+|+... .+.+.+||+.+.+-......+.......
T Consensus 163 ~~~i~~~d~~~~~~~~~~~---~-~~~~~~~~~~s~dg~~l~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 232 (353)
T 3vgz_A 163 ESVIWVVDGGNIKLKTAIQ---N-TGKMSTGLALDSEGKRLYTTNA------DGELITIDTADNKILSRKKLLDDGKEHF 232 (353)
T ss_dssp SCEEEEEETTTTEEEEEEC---C-CCTTCCCCEEETTTTEEEEECT------TSEEEEEETTTTEEEEEEECCCSSSCCC
T ss_pred CceEEEEcCCCCceEEEec---C-CCCccceEEECCCCCEEEEEcC------CCeEEEEECCCCeEEEEEEcCCCCCCcc
Confidence 2358999998876544322 0 1111223334333 35666542 3468899998876543321111111111
Q ss_pred CceEEEe--CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCC
Q 011542 180 GHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGG 257 (483)
Q Consensus 180 ~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~ 257 (483)
...+++. ++.+|+..... ..+..||+.+.+...... .+.+ ...+....++.+|+.+..+
T Consensus 233 ~~~~~~s~dg~~l~~~~~~~------------~~v~~~d~~~~~~~~~~~---~~~~-~~~~~s~dg~~l~v~~~~~--- 293 (353)
T 3vgz_A 233 FINISLDTARQRAFITDSKA------------AEVLVVDTRNGNILAKVA---APES-LAVLFNPARNEAYVTHRQA--- 293 (353)
T ss_dssp EEEEEEETTTTEEEEEESSS------------SEEEEEETTTCCEEEEEE---CSSC-CCEEEETTTTEEEEEETTT---
T ss_pred cceEEECCCCCEEEEEeCCC------------CEEEEEECCCCcEEEEEE---cCCC-ceEEECCCCCEEEEEECCC---
Confidence 1223343 45677765321 445667887776544331 1222 1112222345677765422
Q ss_pred CCcccceeeCcEEEEEcCCCceEE
Q 011542 258 WLSRYDIYYNDTIILDRLSAQWKR 281 (483)
Q Consensus 258 ~~~~~~~~~~~v~~yd~~~~~W~~ 281 (483)
+.+.+||+.+.+...
T Consensus 294 ---------~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 294 ---------GKVSVIDAKSYKVVK 308 (353)
T ss_dssp ---------TEEEEEETTTTEEEE
T ss_pred ---------CeEEEEECCCCeEEE
Confidence 468999998776544
No 67
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=95.59 E-value=0.61 Score=48.91 Aligned_cols=214 Identities=9% Similarity=-0.060 Sum_probs=111.8
Q ss_pred ECCcEEEEEcccCC-----CccccceEEEEcCC------CcEEeee-ecCCCCCCCCCCCCcceeEEEEECCEEEEEccc
Q 011542 28 IGKSKVVVFGGLVD-----KRFLSDVVVYDIDN------KLWFQPE-CTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGR 95 (483)
Q Consensus 28 ~~~~~l~v~GG~~~-----~~~~~~~~~yd~~~------~~W~~~~-~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~ 95 (483)
..|++.+++...+. ......++++|..+ .+-..+. .. + .........-+++.+++...
T Consensus 138 spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~---------~-~~~~~~~~SpDG~~la~~~~ 207 (662)
T 3azo_A 138 LPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDA---------H-RFVTGPRLSPDGRQAVWLAW 207 (662)
T ss_dssp ETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSC---------S-SEECCCEECTTSSEEEEEEE
T ss_pred CCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecC---------C-CcccCceECCCCCEEEEEEC
Confidence 45666555555431 02235799999988 6655543 11 1 11111222235554444443
Q ss_pred cCC-C--CCccEEEEECC-CC---eEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEe
Q 011542 96 FGS-R--RLGDFWVLDTD-IW---QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQL 168 (483)
Q Consensus 96 ~~~-~--~~~~~~~yd~~-t~---~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i 168 (483)
... . ...+++++|+. ++ ....+.. . ........+...|+++|+.+..++ ...++.+|+.+++++.+
T Consensus 208 ~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~---~-~~~~~~~~~~spdg~l~~~~~~~~---~~~l~~~~~~~~~~~~l 280 (662)
T 3azo_A 208 DHPRMPWEGTELKTARVTEDGRFADTRTLLG---G-PEEAIAQAEWAPDGSLIVATDRTG---WWNLHRVDPATGAATQL 280 (662)
T ss_dssp CTTCCTTTCEEEEEEEECTTSCEEEEEEEEE---E-TTBCEEEEEECTTSCEEEEECTTS---SCEEEEECTTTCCEEES
T ss_pred CCCCCCCCCcEEEEEEECCCCcccccEEeCC---C-CCceEcceEECCCCeEEEEECCCC---CeEEEEEECCCCceeec
Confidence 321 1 13579999998 56 4555442 1 011222333334667777765543 34699999999999988
Q ss_pred ccCCC-CCCCCc---CceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEE-EE
Q 011542 169 PVTGS-VPPPRC---GHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTI-TS 242 (483)
Q Consensus 169 ~~~~~-~p~~r~---~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~-~~ 242 (483)
..... ...+.. ....+.. ++++++.+.. .. ..++.+|+++.....+.. +.. ....+ ..
T Consensus 281 ~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~----------~~l~~~d~~~~~~~~l~~----~~~-~~~~~~s~ 344 (662)
T 3azo_A 281 CRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA----------AVLGILDPESGELVDAAG----PWT-EWAATLTV 344 (662)
T ss_dssp SCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS----------CEEEEEETTTTEEEECCS----SCC-EEEEEEEE
T ss_pred ccccccccCccccccCceEeEeCCCEEEEEEEc-Cc----------cEEEEEECCCCcEEEecC----CCC-eEEEEEec
Confidence 63110 000111 1233343 5677766654 21 334444777776666542 111 11223 34
Q ss_pred eCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEcc
Q 011542 243 GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLP 283 (483)
Q Consensus 243 ~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~ 283 (483)
.++.+++..+... ...++|.+|+.+.+.+.+.
T Consensus 345 ~~~~~~~~~~~~~---------~~~~i~~~d~~~g~~~~l~ 376 (662)
T 3azo_A 345 SGTRAVGVAASPR---------TAYEVVELDTVTGRARTIG 376 (662)
T ss_dssp ETTEEEEEEEETT---------EEEEEEEEETTTCCEEEEE
T ss_pred CCCEEEEEEcCCC---------CCCEEEEEECCCCceEEee
Confidence 5666666654332 3457899998888877764
No 68
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=95.58 E-value=0.6 Score=48.15 Aligned_cols=211 Identities=11% Similarity=0.109 Sum_probs=99.3
Q ss_pred eeEEEECCcEEEEEcccCCCccccceEEEEc--CCCcEEeeeecCCCCCCCCCCCCcceeEEEEE----CC-EEEEEccc
Q 011542 23 HSAVNIGKSKVVVFGGLVDKRFLSDVVVYDI--DNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI----DC-HMFIFGGR 95 (483)
Q Consensus 23 h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~----~~-~iyv~GG~ 95 (483)
|.+++..+++.++.++.+ +.+.+||+ .+.+- +..... ...+ .+.++.- ++ .+|+ +.+
T Consensus 182 ~~v~~spdg~~l~v~~~d-----~~V~v~D~~~~t~~~--~~~i~~------g~~p--~~va~sp~~~~dg~~l~v-~~~ 245 (543)
T 1nir_A 182 HISRMSASGRYLLVIGRD-----ARIDMIDLWAKEPTK--VAEIKI------GIEA--RSVESSKFKGYEDRYTIA-GAY 245 (543)
T ss_dssp EEEEECTTSCEEEEEETT-----SEEEEEETTSSSCEE--EEEEEC------CSEE--EEEEECCSTTCTTTEEEE-EEE
T ss_pred ceEEECCCCCEEEEECCC-----CeEEEEECcCCCCcE--EEEEec------CCCc--ceEEeCCCcCCCCCEEEE-EEc
Confidence 444454455433333332 56889999 55443 222211 1111 2333332 44 4555 443
Q ss_pred cCCCCCccEEEEECCCCeEEEeecCCCC--------CCCCcccEEEEEC-CcEEEEEecCCCCcCCccEEEEECCCCceE
Q 011542 96 FGSRRLGDFWVLDTDIWQWSELTSFGDL--------PSPRDFAAASAIG-NRKIVMYGGWDGKKWLSDVYVLDTISLEWM 166 (483)
Q Consensus 96 ~~~~~~~~~~~yd~~t~~W~~l~~~~~~--------p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 166 (483)
.+ +.+.++|..+.+-...-+...+ |.++.. +++.-. ++.+|+... ..+.++.+|..+.+-.
T Consensus 246 ~~----~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~-~i~~s~~~~~~~vs~~-----~~g~i~vvd~~~~~~l 315 (543)
T 1nir_A 246 WP----PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVA-AIIASHEHPEFIVNVK-----ETGKVLLVNYKDIDNL 315 (543)
T ss_dssp ES----SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEE-EEEECSSSSEEEEEET-----TTTEEEEEECTTSSSC
T ss_pred cC----CeEEEEeccccccceeecccCcccCccccccCCceE-EEEECCCCCEEEEEEC-----CCCeEEEEEecCCCcc
Confidence 22 3477889887654332221111 122221 222222 335555442 2456888998775432
Q ss_pred EeccCCCCCCCCcCceEEEe-CC-EEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEe-
Q 011542 167 QLPVTGSVPPPRCGHTATMV-EK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSG- 243 (483)
Q Consensus 167 ~i~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~- 243 (483)
.+. ..+..+.-+.+++. ++ ++|+.+... +.+.++|+.+.+-...-..+..|.+..+.....-
T Consensus 316 ~~~---~i~~~~~~~~~~~spdg~~l~va~~~~------------~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~ 380 (543)
T 1nir_A 316 TVT---SIGAAPFLHDGGWDSSHRYFMTAANNS------------NKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPK 380 (543)
T ss_dssp EEE---EEECCSSCCCEEECTTSCEEEEEEGGG------------TEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETT
T ss_pred eeE---EeccCcCccCceECCCCCEEEEEecCC------------CeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCC
Confidence 221 11223334445554 34 455554321 4455578888765443323444544333333222
Q ss_pred CCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCC-----ceEEccCC
Q 011542 244 GHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSA-----QWKRLPIG 285 (483)
Q Consensus 244 ~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~-----~W~~v~~~ 285 (483)
++.+|+.+...+ +.|-++|..+. .|+.+...
T Consensus 381 ~g~~~~s~~~~d-----------~~V~v~d~~~~~~~~~~~~~v~~l 416 (543)
T 1nir_A 381 YGPVWSTSHLGD-----------GSISLIGTDPKNHPQYAWKKVAEL 416 (543)
T ss_dssp TEEEEEEEBSSS-----------SEEEEEECCTTTCTTTBTSEEEEE
T ss_pred CccEEEeccCCC-----------ceEEEEEeCCCCCchhcCeEEEEE
Confidence 367777664332 45778887652 37665543
No 69
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=95.57 E-value=1.6 Score=41.28 Aligned_cols=110 Identities=13% Similarity=0.076 Sum_probs=55.3
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWV 106 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~ 106 (483)
..++.+++.|+.+ ..+.+||..+.++....... .....-.+++.. +++.++.|+.++ .+.+
T Consensus 61 ~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~-----~v~i 122 (372)
T 1k8k_C 61 APDSNRIVTCGTD-----RNAYVWTLKGRTWKPTLVIL--------RINRAARCVRWAPNEKKFAVGSGSR-----VISI 122 (372)
T ss_dssp ETTTTEEEEEETT-----SCEEEEEEETTEEEEEEECC--------CCSSCEEEEEECTTSSEEEEEETTS-----SEEE
T ss_pred eCCCCEEEEEcCC-----CeEEEEECCCCeeeeeEEee--------cCCCceeEEEECCCCCEEEEEeCCC-----EEEE
Confidence 4456677777653 35888998888876554321 111112222222 456677776543 3556
Q ss_pred EECCCCe-EEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECC
Q 011542 107 LDTDIWQ-WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI 161 (483)
Q Consensus 107 yd~~t~~-W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 161 (483)
||..+.. |...... ..+....-.+++...++..++.|+.++ .+.+||+.
T Consensus 123 ~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~~~d~~ 172 (372)
T 1k8k_C 123 CYFEQENDWWVCKHI-KKPIRSTVLSLDWHPNSVLLAAGSCDF-----KCRIFSAY 172 (372)
T ss_dssp EEEETTTTEEEEEEE-CTTCCSCEEEEEECTTSSEEEEEETTS-----CEEEEECC
T ss_pred EEecCCCcceeeeee-ecccCCCeeEEEEcCCCCEEEEEcCCC-----CEEEEEcc
Confidence 6654432 3222210 011122222333334556777787543 47788854
No 70
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=95.55 E-value=1.5 Score=40.60 Aligned_cols=208 Identities=9% Similarity=-0.052 Sum_probs=104.7
Q ss_pred cceeEEEECCcE-EEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCC
Q 011542 21 SGHSAVNIGKSK-VVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGS 98 (483)
Q Consensus 21 ~~h~~~~~~~~~-l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~ 98 (483)
...+.+...++. +|+.+..+ ..+++||+.+. ...+.. +... -++++.. ++++|+....
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~-----~~i~~~~~~~~-~~~~~~----------~~~~-~~~l~~~~dg~l~v~~~~--- 88 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQ-----NRTWAWSDDGQ-LSPEMH----------PSHH-QNGHCLNKQGHLIACSHG--- 88 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGG-----TEEEEEETTSC-EEEEES----------SCSS-EEEEEECTTCCEEEEETT---
T ss_pred cccCCeEeCCCCEEEEEeCCC-----CEEEEEECCCC-eEEEEC----------CCCC-cceeeECCCCcEEEEecC---
Confidence 344555555554 77777543 35899999988 555531 1111 2334333 5678776421
Q ss_pred CCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEE----ecCC------C--CcCCccEEEEECCCCceE
Q 011542 99 RRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMY----GGWD------G--KKWLSDVYVLDTISLEWM 166 (483)
Q Consensus 99 ~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~----GG~~------~--~~~~~~v~~yd~~t~~W~ 166 (483)
...+.+||+.+++...+...........-..++.-.++.+|+. |... . ......+++||+. ++..
T Consensus 89 --~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~ 165 (296)
T 3e5z_A 89 --LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS 165 (296)
T ss_dssp --TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE
T ss_pred --CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE
Confidence 1358999998888776642100111111223445566788886 4311 0 1123479999987 6665
Q ss_pred EeccCCCCCCCCcCceEEEe-CCEEEEEccCCCCCCcccceecccccccccCC-CCCe-EEeccCCCCCCCCeeeEEEE-
Q 011542 167 QLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENE-TPGW-TQLKLPGQAPSSRCGHTITS- 242 (483)
Q Consensus 167 ~i~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~-~~~W-~~~~~~g~~p~~r~~~~~~~- 242 (483)
.+.. ....+ ..++.. ++++++.... . ..+..||+. +.+. ...... ....... ..+++
T Consensus 166 ~~~~--~~~~~---~gi~~s~dg~~lv~~~~-~-----------~~i~~~~~~~~g~~~~~~~~~-~~~~~~p-~~i~~d 226 (296)
T 3e5z_A 166 APIR--DRVKP---NGLAFLPSGNLLVSDTG-D-----------NATHRYCLNARGETEYQGVHF-TVEPGKT-DGLRVD 226 (296)
T ss_dssp EEEC--CCSSE---EEEEECTTSCEEEEETT-T-----------TEEEEEEECSSSCEEEEEEEE-CCSSSCC-CSEEEB
T ss_pred Eeec--CCCCC---ccEEECCCCCEEEEeCC-C-----------CeEEEEEECCCCcCcCCCeEe-eCCCCCC-CeEEEC
Confidence 5431 11111 233333 4555544322 1 334555664 3444 211110 0111111 12333
Q ss_pred eCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccC
Q 011542 243 GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPI 284 (483)
Q Consensus 243 ~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (483)
.++.||+.. . +.|.+||+.......+..
T Consensus 227 ~~G~l~v~~---~-----------~~v~~~~~~g~~~~~~~~ 254 (296)
T 3e5z_A 227 AGGLIWASA---G-----------DGVHVLTPDGDELGRVLT 254 (296)
T ss_dssp TTSCEEEEE---T-----------TEEEEECTTSCEEEEEEC
T ss_pred CCCCEEEEc---C-----------CeEEEECCCCCEEEEEEC
Confidence 456788765 1 358999998665555543
No 71
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=95.53 E-value=1.4 Score=40.29 Aligned_cols=219 Identities=9% Similarity=-0.049 Sum_probs=111.5
Q ss_pred eEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCc
Q 011542 24 SAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLG 102 (483)
Q Consensus 24 ~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~ 102 (483)
.++...++.+|+.... ...+.+||+. +++..+.... ....-+.++.. ++++|+.... .+
T Consensus 66 ~i~~~~~g~l~v~~~~-----~~~v~~~d~~-g~~~~~~~~~---------~~~~~~~i~~~~~g~l~v~~~~-----~~ 125 (300)
T 2qc5_A 66 CLIVSSLGDIWFTENG-----ANKIGKLSKK-GGFTEYPLPQ---------PDSGPYGITEGLNGDIWFTQLN-----GD 125 (300)
T ss_dssp EEEECTTSCEEEEETT-----TTEEEEECTT-SCEEEEECSS---------TTCCEEEEEECSTTCEEEEETT-----TT
T ss_pred eEEECCCCCEEEEecC-----CCeEEEECCC-CCeEEecCCC---------CCCCCccceECCCCCEEEEccC-----CC
Confidence 3444455677776432 1358889988 6766543210 11223444444 5688876432 13
Q ss_pred cEEEEECCCCeEEEeecCCCCC-CCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCc
Q 011542 103 DFWVLDTDIWQWSELTSFGDLP-SPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGH 181 (483)
Q Consensus 103 ~~~~yd~~t~~W~~l~~~~~~p-~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~ 181 (483)
.+++||+. ++..... .+ ....-.+++.-.++++|+.... ...+++||+ +++...+...... ..-.
T Consensus 126 ~i~~~~~~-g~~~~~~----~~~~~~~~~~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~~~~~---~~~~ 191 (300)
T 2qc5_A 126 RIGKLTAD-GTIYEYD----LPNKGSYPAFITLGSDNALWFTENQ-----NNSIGRITN-TGKLEEYPLPTNA---AAPV 191 (300)
T ss_dssp EEEEECTT-SCEEEEE----CSSTTCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEECSSTT---CCEE
T ss_pred eEEEECCC-CCEEEcc----CCCCCCCceeEEECCCCCEEEEecC-----CCeEEEECC-CCcEEEeeCCCCC---CCcc
Confidence 58899988 6665543 22 1222234444455678886531 245899998 7777765421111 1112
Q ss_pred eEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCCCCCCCC
Q 011542 182 TATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWL 259 (483)
Q Consensus 182 ~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~ 259 (483)
.++.. ++.+|+..... ..+..||+ +..+.....+. ....-.++++ .++.||+....
T Consensus 192 ~i~~d~~g~l~v~~~~~------------~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~d~~g~l~v~~~~------ 249 (300)
T 2qc5_A 192 GITSGNDGALWFVEIMG------------NKIGRITT-TGEISEYDIPT---PNARPHAITAGKNSEIWFTEWG------ 249 (300)
T ss_dssp EEEECTTSSEEEEETTT------------TEEEEECT-TCCEEEEECSS---TTCCEEEEEECSTTCEEEEETT------
T ss_pred eEEECCCCCEEEEccCC------------CEEEEEcC-CCcEEEEECCC---CCCCceEEEECCCCCEEEeccC------
Confidence 33333 56788864321 33556677 55666554211 1112234444 35578875421
Q ss_pred cccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEE-CCEEEEEc
Q 011542 260 SRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFG 308 (483)
Q Consensus 260 ~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~-~~~i~v~G 308 (483)
.+.+.+||+ +........... ...-++++.. ++.||+.+
T Consensus 250 ------~~~i~~~~~-~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 250 ------ANQIGRITN-DNTIQEYQLQTE---NAEPHGITFGKDGSVWFAL 289 (300)
T ss_dssp ------TTEEEEECT-TSCEEEEECCST---TCCCCCEEECTTSCEEEEC
T ss_pred ------CCeEEEECC-CCcEEEEECCcc---CCccceeEeCCCCCEEEEc
Confidence 245888988 455554432111 1112334433 46676654
No 72
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.44 E-value=0.78 Score=49.23 Aligned_cols=108 Identities=9% Similarity=-0.039 Sum_probs=59.5
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~y 107 (483)
..++..++.|+.+ ..+.+||..+++....-.. ...........-++..++.|+.+ ..+.+|
T Consensus 22 sp~~~~la~~~~~-----g~v~iwd~~~~~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw 82 (814)
T 3mkq_A 22 HPTEPWVLTTLYS-----GRVEIWNYETQVEVRSIQV---------TETPVRAGKFIARKNWIIVGSDD-----FRIRVF 82 (814)
T ss_dssp CSSSSEEEEEETT-----SEEEEEETTTTEEEEEEEC---------CSSCEEEEEEEGGGTEEEEEETT-----SEEEEE
T ss_pred CCCCCEEEEEeCC-----CEEEEEECCCCceEEEEec---------CCCcEEEEEEeCCCCEEEEEeCC-----CeEEEE
Confidence 3556777777643 3588999888765443211 11112222223355667777653 258899
Q ss_pred ECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCC
Q 011542 108 DTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 108 d~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
|..+++....-. . ....-.+++...++..++.|+.+ ..+.+||+.++
T Consensus 83 ~~~~~~~~~~~~---~-~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~ 129 (814)
T 3mkq_A 83 NYNTGEKVVDFE---A-HPDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNWENN 129 (814)
T ss_dssp ETTTCCEEEEEE---C-CSSCEEEEEECSSSSEEEEEETT-----SEEEEEEGGGT
T ss_pred ECCCCcEEEEEe---c-CCCCEEEEEEeCCCCEEEEEcCC-----CEEEEEECCCC
Confidence 998887644321 1 11112233333455566677643 34788888765
No 73
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=95.44 E-value=0.62 Score=49.30 Aligned_cols=194 Identities=10% Similarity=-0.019 Sum_probs=95.6
Q ss_pred cceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEE-EECCEEEEEccccCCCCCccEEEEECCCC-eEEEeecCCCC
Q 011542 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAV-AIDCHMFIFGGRFGSRRLGDFWVLDTDIW-QWSELTSFGDL 123 (483)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~t~-~W~~l~~~~~~ 123 (483)
..++++|+.+++-..+... ......-..++ .-+++.++++..+.......++.+|+.++ ....+.....
T Consensus 235 ~~l~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~- 305 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTG--------EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD- 305 (706)
T ss_dssp EEEEEEETTTTEEEECCCC--------SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC-
T ss_pred eEEEEEECCCCceEeeccC--------CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC-
Confidence 5789999998876554311 01111111222 22555444544443333457999999998 7766642111
Q ss_pred CCCC-cccEEEEEC--CcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCce-EEEe-C-CEEEEEccCC
Q 011542 124 PSPR-DFAAASAIG--NRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHT-ATMV-E-KRLLIYGGRG 197 (483)
Q Consensus 124 p~~r-~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~-~~~~-~-~~lyv~GG~~ 197 (483)
.... ....++... ++++++.+..++ ...+|.+|........+. ...... .. .... + +.||+.+...
T Consensus 306 ~~~~~~~~~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~~~~~l~---~~~~~v--~~~~~~spdg~~l~~~~~~~ 377 (706)
T 2z3z_A 306 KHYVEPLHPLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGRLIRQVT---KGEWEV--TNFAGFDPKGTRLYFESTEA 377 (706)
T ss_dssp SSCCCCCSCCEECTTCSSEEEEEECTTS---SCEEEEEETTSCEEEECC---CSSSCE--EEEEEECTTSSEEEEEESSS
T ss_pred CCeECccCCceeecCCCCEEEEEEccCC---ccEEEEEECCCCEEEecC---CCCeEE--EeeeEEcCCCCEEEEEecCC
Confidence 0000 012223334 667666665443 456888887777777664 211111 11 2222 3 4566665432
Q ss_pred CCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCC
Q 011542 198 GGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLS 276 (483)
Q Consensus 198 ~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~ 276 (483)
... . ..++.+|..+...+.+.. ... .+++.. -+++.+++...+.. ....++++|..+
T Consensus 378 ~~~--~------~~l~~~d~~~~~~~~l~~-----~~~-~~~~~~spdg~~l~~~~~~~~--------~p~~i~l~d~~~ 435 (706)
T 2z3z_A 378 SPL--E------RHFYCIDIKGGKTKDLTP-----ESG-MHRTQLSPDGSAIIDIFQSPT--------VPRKVTVTNIGK 435 (706)
T ss_dssp CTT--C------BEEEEEETTCCCCEESCC-----SSS-EEEEEECTTSSEEEEEEECSS--------CSCEEEEEESSS
T ss_pred CCc--e------EEEEEEEcCCCCceeccC-----CCc-eEEEEECCCCCEEEEEecCCC--------CCcEEEEEECCC
Confidence 211 1 234445777766555541 111 233333 34444454433221 235688888877
Q ss_pred Cc
Q 011542 277 AQ 278 (483)
Q Consensus 277 ~~ 278 (483)
.+
T Consensus 436 ~~ 437 (706)
T 2z3z_A 436 GS 437 (706)
T ss_dssp CE
T ss_pred Ce
Confidence 65
No 74
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=95.42 E-value=1.2 Score=47.28 Aligned_cols=212 Identities=12% Similarity=-0.014 Sum_probs=104.1
Q ss_pred ccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCC
Q 011542 43 RFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGD 122 (483)
Q Consensus 43 ~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~ 122 (483)
.....+|+.+.....|..+-...... ............+-+++.++++...++.....++++|+.+++......
T Consensus 95 ~~~~~l~~~~~~~~~~~~lld~~~l~---~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~--- 168 (710)
T 2xdw_A 95 QNQRVLYVQDSLEGEARVFLDPNILS---DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--- 168 (710)
T ss_dssp CSSCEEEEESSTTSCCEEEECGGGGC---TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE---
T ss_pred ceEEEEEEEcCCCCCcEEEECHHHhc---cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc---
Confidence 34457888887777887653221100 000011112222235666666544333333479999999998876532
Q ss_pred CCCCCcccEEEEECCcEEEEEecCCCC-----------cCCccEEEEECCCCceE--EeccCCCCCCCCcCceEEEe-CC
Q 011542 123 LPSPRDFAAASAIGNRKIVMYGGWDGK-----------KWLSDVYVLDTISLEWM--QLPVTGSVPPPRCGHTATMV-EK 188 (483)
Q Consensus 123 ~p~~r~~~~~~~~~~~~iyv~GG~~~~-----------~~~~~v~~yd~~t~~W~--~i~~~~~~p~~r~~~~~~~~-~~ 188 (483)
+... ....+-..|++.++++..... .....++++++.+.+.. .+. . ....+......... ++
T Consensus 169 -~~~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~-~-~~~~~~~~~~~~~SpDg 244 (710)
T 2xdw_A 169 -ERVK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA-E-FPDEPKWMGGAELSDDG 244 (710)
T ss_dssp -EEEC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE-C-CTTCTTCEEEEEECTTS
T ss_pred -cCcc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEe-c-cCCCCeEEEEEEEcCCC
Confidence 1111 122333345544444444332 23456899999887643 221 1 11112222233333 44
Q ss_pred -EEEEEccCCCCCCcccceecccccccccCCC------C--CeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCC
Q 011542 189 -RLLIYGGRGGGGPIMGDLWALKGLIEEENET------P--GWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWL 259 (483)
Q Consensus 189 -~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~------~--~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~ 259 (483)
.|++....... .. +.++.+|+.+ . .+..+.. ..... .......++.||+.+..+.
T Consensus 245 ~~l~~~~~~~~~--~~------~~l~~~d~~~~~~~~~~~~~~~~l~~---~~~~~-~~~~s~dg~~l~~~s~~~~---- 308 (710)
T 2xdw_A 245 RYVLLSIREGCD--PV------NRLWYCDLQQESNGITGILKWVKLID---NFEGE-YDYVTNEGTVFTFKTNRHS---- 308 (710)
T ss_dssp CEEEEEEECSSS--SC------CEEEEEEGGGSSSSSCSSCCCEEEEC---SSSSC-EEEEEEETTEEEEEECTTC----
T ss_pred CEEEEEEEccCC--Cc------cEEEEEECcccccccCCccceEEeeC---CCCcE-EEEEeccCCEEEEEECCCC----
Confidence 44444332211 12 2334446654 3 5777762 11111 1223346778888865432
Q ss_pred cccceeeCcEEEEEcCCC---ceEEccCC
Q 011542 260 SRYDIYYNDTIILDRLSA---QWKRLPIG 285 (483)
Q Consensus 260 ~~~~~~~~~v~~yd~~~~---~W~~v~~~ 285 (483)
....++++|+.+. .|+.+...
T Consensus 309 -----~~~~l~~~d~~~~~~~~~~~l~~~ 332 (710)
T 2xdw_A 309 -----PNYRLINIDFTDPEESKWKVLVPE 332 (710)
T ss_dssp -----TTCEEEEEETTSCCGGGCEEEECC
T ss_pred -----CCCEEEEEeCCCCCcccceeccCC
Confidence 2357999998765 58877543
No 75
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.38 E-value=2.3 Score=41.83 Aligned_cols=182 Identities=12% Similarity=0.048 Sum_probs=85.3
Q ss_pred ECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 85 IDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 85 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
.++..++.|+.++ .+.+||+.+.+-...- ........++.+ ++..++.|+.++ .+.+||..+.+
T Consensus 247 ~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~-~~~~l~~~~~d~-----~i~i~d~~~~~ 310 (445)
T 2ovr_B 247 YDGRRVVSGAYDF-----MVKVWDPETETCLHTL-----QGHTNRVYSLQF-DGIHVVSGSLDT-----SIRVWDVETGN 310 (445)
T ss_dssp ECSSCEEEEETTS-----CEEEEEGGGTEEEEEE-----CCCSSCEEEEEE-CSSEEEEEETTS-----CEEEEETTTCC
T ss_pred ECCCEEEEEcCCC-----EEEEEECCCCcEeEEe-----cCCCCceEEEEE-CCCEEEEEeCCC-----eEEEEECCCCC
Confidence 3666666666543 4788898776533221 111111222334 446667776543 48889988776
Q ss_pred eEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeC
Q 011542 165 WMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGG 244 (483)
Q Consensus 165 W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~ 244 (483)
-...- . .......+...++.+++.|+.+ ..+..||+.+.+-...- .+.... .....++..+
T Consensus 311 ~~~~~---~--~~~~~v~~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~-~~~~~~-~~~v~~~~~~ 371 (445)
T 2ovr_B 311 CIHTL---T--GHQSLTSGMELKDNILVSGNAD------------STVKIWDIKTGQCLQTL-QGPNKH-QSAVTCLQFN 371 (445)
T ss_dssp EEEEE---C--CCCSCEEEEEEETTEEEEEETT------------SCEEEEETTTCCEEEEE-CSTTSC-SSCEEEEEEC
T ss_pred EEEEE---c--CCcccEEEEEEeCCEEEEEeCC------------CeEEEEECCCCcEEEEE-ccCCCC-CCCEEEEEEC
Confidence 44322 1 1111122223344455666543 23445676655432221 111111 1111222334
Q ss_pred CEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEE-ccCCCCCCCCCcceEEEEE-CCEEEEEccCCCC
Q 011542 245 HYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKR-LPIGNEPPPARAYHSMTCL-GSLYLLFGGFDGK 313 (483)
Q Consensus 245 ~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~-v~~~~~~p~~R~~~~~~~~-~~~i~v~GG~~~~ 313 (483)
+.+++.|+.+ ..+.+||+.+.+... +......+..-...++... ++.+++.|+.++.
T Consensus 372 ~~~l~s~~~d------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 372 KNFVITSSDD------------GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp SSEEEEEETT------------SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred CCEEEEEeCC------------CeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence 5566666643 358889988776543 2111100111111222233 4566677777664
No 76
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=95.35 E-value=1.6 Score=39.88 Aligned_cols=221 Identities=12% Similarity=-0.024 Sum_probs=114.0
Q ss_pred eeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCC
Q 011542 23 HSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRL 101 (483)
Q Consensus 23 h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~ 101 (483)
+.++...++.+|+.... ...+.+||+. ++...+... .....-+.++.. ++.+|+.... .
T Consensus 23 ~~i~~d~~g~l~v~~~~-----~~~v~~~~~~-~~~~~~~~~---------~~~~~~~~i~~~~~g~l~v~~~~-----~ 82 (300)
T 2qc5_A 23 YGITSSEDGKVWFTQHK-----ANKISSLDQS-GRIKEFEVP---------TPDAKVMCLIVSSLGDIWFTENG-----A 82 (300)
T ss_dssp EEEEECTTSCEEEEETT-----TTEEEEECTT-SCEEEEECS---------STTCCEEEEEECTTSCEEEEETT-----T
T ss_pred ceeeECCCCCEEEEcCC-----CCeEEEECCC-CceEEEECC---------CCCCcceeEEECCCCCEEEEecC-----C
Confidence 44555566888886532 2458889988 776654311 011122344443 4678886431 1
Q ss_pred ccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCc
Q 011542 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGH 181 (483)
Q Consensus 102 ~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~ 181 (483)
..+.+||+. +++...... .....-++++...++.+|+.... ...+++||+. ++........ ....-+
T Consensus 83 ~~v~~~d~~-g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~~-g~~~~~~~~~---~~~~~~ 149 (300)
T 2qc5_A 83 NKIGKLSKK-GGFTEYPLP---QPDSGPYGITEGLNGDIWFTQLN-----GDRIGKLTAD-GTIYEYDLPN---KGSYPA 149 (300)
T ss_dssp TEEEEECTT-SCEEEEECS---STTCCEEEEEECSTTCEEEEETT-----TTEEEEECTT-SCEEEEECSS---TTCCEE
T ss_pred CeEEEECCC-CCeEEecCC---CCCCCCccceECCCCCEEEEccC-----CCeEEEECCC-CCEEEccCCC---CCCCce
Confidence 358899998 677655421 11222334444446688886532 2458899987 6666553111 111122
Q ss_pred eEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEe-CCEEEEEcCCCCCCCC
Q 011542 182 TATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSG-GHYLLLFGGHGTGGWL 259 (483)
Q Consensus 182 ~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~ 259 (483)
.++.. ++++|+..... ..+..||+ +.+...+..+.. ......+++. ++.+|+....
T Consensus 150 ~i~~d~~g~l~v~~~~~------------~~i~~~~~-~g~~~~~~~~~~---~~~~~~i~~d~~g~l~v~~~~------ 207 (300)
T 2qc5_A 150 FITLGSDNALWFTENQN------------NSIGRITN-TGKLEEYPLPTN---AAAPVGITSGNDGALWFVEIM------ 207 (300)
T ss_dssp EEEECTTSSEEEEETTT------------TEEEEECT-TCCEEEEECSST---TCCEEEEEECTTSSEEEEETT------
T ss_pred eEEECCCCCEEEEecCC------------CeEEEECC-CCcEEEeeCCCC---CCCcceEEECCCCCEEEEccC------
Confidence 33333 46788764311 33555677 566665542111 1122234443 5677775421
Q ss_pred cccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEE-CCEEEEEc
Q 011542 260 SRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFG 308 (483)
Q Consensus 260 ~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~-~~~i~v~G 308 (483)
.+.+++||+ +..+....... ....-.+++.- ++.||+..
T Consensus 208 ------~~~i~~~~~-~g~~~~~~~~~---~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 208 ------GNKIGRITT-TGEISEYDIPT---PNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp ------TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECSTTCEEEEE
T ss_pred ------CCEEEEEcC-CCcEEEEECCC---CCCCceEEEECCCCCEEEec
Confidence 145888998 55665543211 11112233332 46777765
No 77
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=95.31 E-value=1.5 Score=43.09 Aligned_cols=108 Identities=8% Similarity=0.021 Sum_probs=57.9
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE-ECCEEEEEccccCCCCCccEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~~iyv~GG~~~~~~~~~~~~y 107 (483)
.++.+++.|+.++ .+.+||..+.+-...- ...... -.+++. -++.+++.|+.++ .+.++
T Consensus 118 p~~~~l~s~s~Dg-----~i~vwd~~~~~~~~~l---------~~h~~~-V~~v~~~~~~~~l~sgs~D~-----~i~iw 177 (410)
T 1vyh_C 118 PVFSVMVSASEDA-----TIKVWDYETGDFERTL---------KGHTDS-VQDISFDHSGKLLASCSADM-----TIKLW 177 (410)
T ss_dssp SSSSEEEEEESSS-----CEEEEETTTCCCCEEE---------CCCSSC-EEEEEECTTSSEEEEEETTS-----CCCEE
T ss_pred CCCCEEEEEeCCC-----eEEEEECCCCcEEEEE---------eccCCc-EEEEEEcCCCCEEEEEeCCC-----eEEEE
Confidence 4566778777643 4888998877543221 011111 122222 2567777777654 25677
Q ss_pred ECCCCeEEEeecCCCCCCC-CcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceE
Q 011542 108 DTDIWQWSELTSFGDLPSP-RDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWM 166 (483)
Q Consensus 108 d~~t~~W~~l~~~~~~p~~-r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 166 (483)
|+.+..- +.. +... ..-.+++...++..++.|+.++ .+.+||+.++.-.
T Consensus 178 d~~~~~~--~~~---~~~h~~~V~~v~~~p~~~~l~s~s~D~-----~i~~wd~~~~~~~ 227 (410)
T 1vyh_C 178 DFQGFEC--IRT---MHGHDHNVSSVSIMPNGDHIVSASRDK-----TIKMWEVQTGYCV 227 (410)
T ss_dssp ETTSSCE--EEC---CCCCSSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTCCEE
T ss_pred eCCCCce--eEE---EcCCCCCEEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCcEE
Confidence 8876543 221 1111 1122233334556777777543 5788898877643
No 78
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=95.27 E-value=1.3 Score=46.85 Aligned_cols=157 Identities=12% Similarity=-0.021 Sum_probs=78.1
Q ss_pred ccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCC-ceEEeccCCCCCCCC-c
Q 011542 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL-EWMQLPVTGSVPPPR-C 179 (483)
Q Consensus 102 ~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~-~W~~i~~~~~~p~~r-~ 179 (483)
..++++|+.+++-..+.. ..........++...|++.++++..+.......++.+|+.++ ....+..... .... .
T Consensus 235 ~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~-~~~~~~ 311 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQT--GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD-KHYVEP 311 (706)
T ss_dssp EEEEEEETTTTEEEECCC--CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC-SSCCCC
T ss_pred eEEEEEECCCCceEeecc--CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC-CCeECc
Confidence 469999999887665542 011111112233334555555555444444567999999998 7766542111 0000 0
Q ss_pred CceEEEe---CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE--eCCEEEEEcCCC
Q 011542 180 GHTATMV---EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS--GGHYLLLFGGHG 254 (483)
Q Consensus 180 ~~~~~~~---~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~--~~~~i~v~GG~~ 254 (483)
...+... ++++++.+...+. ..++.+|........+. ........ .++. .++.|++.+...
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~----------~~l~~~~~~~~~~~~l~---~~~~~v~~-~~~~spdg~~l~~~~~~~ 377 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGW----------NHLYLYDTTGRLIRQVT---KGEWEVTN-FAGFDPKGTRLYFESTEA 377 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSS----------CEEEEEETTSCEEEECC---CSSSCEEE-EEEECTTSSEEEEEESSS
T ss_pred cCCceeecCCCCEEEEEEccCCc----------cEEEEEECCCCEEEecC---CCCeEEEe-eeEEcCCCCEEEEEecCC
Confidence 1122332 5675555543221 23444565555555554 11111111 1222 234566655432
Q ss_pred CCCCCcccceeeCcEEEEEcCCCceEEcc
Q 011542 255 TGGWLSRYDIYYNDTIILDRLSAQWKRLP 283 (483)
Q Consensus 255 ~~~~~~~~~~~~~~v~~yd~~~~~W~~v~ 283 (483)
.. ....+|.+|..+.....+.
T Consensus 378 ~~--------~~~~l~~~d~~~~~~~~l~ 398 (706)
T 2z3z_A 378 SP--------LERHFYCIDIKGGKTKDLT 398 (706)
T ss_dssp CT--------TCBEEEEEETTCCCCEESC
T ss_pred CC--------ceEEEEEEEcCCCCceecc
Confidence 21 1346899999887776665
No 79
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.24 E-value=2.2 Score=40.64 Aligned_cols=115 Identities=7% Similarity=-0.050 Sum_probs=54.6
Q ss_pred EEEEEcccCCCc-cccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECC-EEEEEccccCCCCCccEEEEEC
Q 011542 32 KVVVFGGLVDKR-FLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC-HMFIFGGRFGSRRLGDFWVLDT 109 (483)
Q Consensus 32 ~l~v~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~ 109 (483)
..+++|.+.... ..-.+|.+|+.++++..+... . ...++ +.+..-++ .||+.+........-.+|.+|.
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~------~~~p~--~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~ 84 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-E------VANPS--YLIPSADGKFVYSVNEFSKDQAAVSAFAFDK 84 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-E------CSCCC--SEEECTTSSEEEEEECCSSTTCEEEEEEEET
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-c------CCCCc--eEEECCCCCEEEEEEccCCCCCcEEEEEEeC
Confidence 444556554321 112356667888888877643 1 11111 22222233 5666654321111112455666
Q ss_pred CCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCC
Q 011542 110 DIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 110 ~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
.+++...+.. .+..-.......+.++.+|+.... ...+.+|++.+.
T Consensus 85 ~~g~~~~~~~---~~~~~~~p~~~~~dg~~l~~~~~~-----~~~v~~~~~~~~ 130 (361)
T 3scy_A 85 EKGTLHLLNT---QKTMGADPCYLTTNGKNIVTANYS-----GGSITVFPIGQD 130 (361)
T ss_dssp TTTEEEEEEE---EECSSSCEEEEEECSSEEEEEETT-----TTEEEEEEBCTT
T ss_pred CCCcEEEeeE---eccCCCCcEEEEECCCEEEEEECC-----CCEEEEEEeCCC
Confidence 6677777653 221111222223344467765532 245778887643
No 80
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=95.17 E-value=1.3 Score=41.81 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=52.7
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE-ECCEEEEEccccCCCCCccEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~~iyv~GG~~~~~~~~~~~~y 107 (483)
.++..++.|+.+ ..+.+||..+.+-...-.. ...-.+++. -++..++.++.+.......+.+|
T Consensus 84 ~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~ 147 (369)
T 3zwl_B 84 CFTKYCVTGSAD-----YSIKLWDVSNGQCVATWKS-----------PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIY 147 (369)
T ss_dssp TTSSEEEEEETT-----TEEEEEETTTCCEEEEEEC-----------SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEE
T ss_pred CCCCEEEEEeCC-----CeEEEEECCCCcEEEEeec-----------CCCeEEEEEccCCCEEEEecCCccCCCCEEEEE
Confidence 445566666643 3588899887765443321 111122222 24555555554312222356677
Q ss_pred ECCCC----eEEEeecCC--C--CCCC-CcccEEEEECCcEEEEEecCCCCcCCccEEEEECCC
Q 011542 108 DTDIW----QWSELTSFG--D--LPSP-RDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTIS 162 (483)
Q Consensus 108 d~~t~----~W~~l~~~~--~--~p~~-r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t 162 (483)
|..+. .+....... . .... ....+++...++..++.|+.+ ..+.+||+.+
T Consensus 148 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~ 206 (369)
T 3zwl_B 148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-----GKISKYDVSN 206 (369)
T ss_dssp EEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT-----SEEEEEETTT
T ss_pred EecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC-----CEEEEEECCC
Confidence 66432 122111000 0 0000 022222333455677777654 3588999987
No 81
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.12 E-value=0.14 Score=49.41 Aligned_cols=112 Identities=11% Similarity=0.023 Sum_probs=54.4
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWV 106 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~ 106 (483)
..++.+++.|+.+ ..+.+||+.++.|..+.... ..... -.+++.. ++++++.|+.++ .+.+
T Consensus 20 s~~g~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~-------~h~~~-v~~~~~s~~~~~l~s~s~d~-----~v~v 81 (377)
T 3dwl_C 20 NSQRTEFVTTTAT-----NQVELYEQDGNGWKHARTFS-------DHDKI-VTCVDWAPKSNRIVTCSQDR-----NAYV 81 (377)
T ss_dssp CSSSSEEECCCSS-----SCBCEEEEETTEEEECCCBC-------CCSSC-EEEEEECTTTCCEEEEETTS-----SEEE
T ss_pred CCCCCEEEEecCC-----CEEEEEEccCCceEEEEEEe-------cCCce-EEEEEEeCCCCEEEEEeCCC-----eEEE
Confidence 3456777777754 35778898888887765431 11111 1222222 456677776543 4788
Q ss_pred EECCCCe-EEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 107 LDTDIWQ-WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 107 yd~~t~~-W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
||..+.. |...... ......-.+++...++.+++.|+.++ .+.+||..+.+
T Consensus 82 wd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~ 133 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVL--LRLNRAATFVRWSPNEDKFAVGSGAR-----VISVCYFEQEN 133 (377)
T ss_dssp C------CCCCEEEC--CCCSSCEEEEECCTTSSCCEEEESSS-----CEEECCC----
T ss_pred EEcCCCCceeeeeEe--cccCCceEEEEECCCCCEEEEEecCC-----eEEEEEECCcc
Confidence 8887766 4433321 11111222222334556777777543 46777877664
No 82
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=95.11 E-value=0.9 Score=43.70 Aligned_cols=178 Identities=15% Similarity=0.042 Sum_probs=83.8
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECC-cEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGN-RKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
+++.++.|+.++ .+.++|..+++-...-. ... ..-.+++...+ ..+++.||.++ .+.+||+.+.+
T Consensus 150 dg~~l~sgs~dg-----~v~iwd~~~~~~~~~~~---~h~-~~v~~v~~s~~~~~~~~s~~~dg-----~v~~wd~~~~~ 215 (357)
T 4g56_B 150 DGTQAVSGGKDF-----SVKVWDLSQKAVLKSYN---AHS-SEVNCVAACPGKDTIFLSCGEDG-----RILLWDTRKPK 215 (357)
T ss_dssp SSSEEEEEETTS-----CEEEEETTTTEEEEEEC---CCS-SCEEEEEECTTCSSCEEEEETTS-----CEEECCTTSSS
T ss_pred CCCEEEEEeCCC-----eEEEEECCCCcEEEEEc---CCC-CCEEEEEEccCCCceeeeeccCC-----ceEEEECCCCc
Confidence 566777777554 37889998876543321 111 11122222223 24777777544 37778887765
Q ss_pred eEEeccCCCCCCCCcC-ceEEEe--CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEE
Q 011542 165 WMQLPVTGSVPPPRCG-HTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTIT 241 (483)
Q Consensus 165 W~~i~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~ 241 (483)
-.... ........ .+++.. ++.+++.|+... .+..||+.+.+-...- ....... .+++
T Consensus 216 ~~~~~---~~~~~~~~v~~v~~sp~~~~~la~g~~d~------------~i~~wd~~~~~~~~~~---~~~~~~v-~~l~ 276 (357)
T 4g56_B 216 PATRI---DFCASDTIPTSVTWHPEKDDTFACGDETG------------NVSLVNIKNPDSAQTS---AVHSQNI-TGLA 276 (357)
T ss_dssp CBCBC---CCTTCCSCEEEEEECTTSTTEEEEEESSS------------CEEEEESSCGGGCEEE---CCCSSCE-EEEE
T ss_pred eeeee---eeccccccccchhhhhcccceEEEeeccc------------ceeEEECCCCcEeEEE---eccceeE-EEEE
Confidence 33221 11111111 222332 356777776432 2334565543321111 1111111 1223
Q ss_pred E--eCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEE--ECCEEEEEccCCCC
Q 011542 242 S--GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTC--LGSLYLLFGGFDGK 313 (483)
Q Consensus 242 ~--~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~--~~~~i~v~GG~~~~ 313 (483)
. .+..+++.|+.+ ..|.+||..+.+-...-.. ...-.+++. .++.+++.||.++.
T Consensus 277 ~sp~~~~~lasgs~D------------~~i~iwd~~~~~~~~~~~H-----~~~V~~vafsP~d~~~l~s~s~Dg~ 335 (357)
T 4g56_B 277 YSYHSSPFLASISED------------CTVAVLDADFSEVFRDLSH-----RDFVTGVAWSPLDHSKFTTVGWDHK 335 (357)
T ss_dssp ECSSSSCCEEEEETT------------SCEEEECTTSCEEEEECCC-----SSCEEEEEECSSSTTEEEEEETTSC
T ss_pred EcCCCCCEEEEEeCC------------CEEEEEECCCCcEeEECCC-----CCCEEEEEEeCCCCCEEEEEcCCCe
Confidence 2 233555556543 3478889877654433221 111223333 25678888887764
No 83
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=95.07 E-value=1.9 Score=40.06 Aligned_cols=232 Identities=11% Similarity=-0.038 Sum_probs=111.4
Q ss_pred cceeEEEEC-CcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCC
Q 011542 21 SGHSAVNIG-KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGS 98 (483)
Q Consensus 21 ~~h~~~~~~-~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~ 98 (483)
.+-..+-.. ++.+|+.... ...+++||+.++.-..+.. + .+. .+++.. ++++|+..
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~----------~-~~~-~~i~~~~dG~l~v~~----- 71 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIP-----AKKVCRWDSFTKQVQRVTM----------D-APV-SSVALRQSGGYVATI----- 71 (297)
T ss_dssp BEEEEEEETTTTEEEEEETT-----TTEEEEEETTTCCEEEEEC----------S-SCE-EEEEEBTTSSEEEEE-----
T ss_pred cccCCeEECCCCEEEEEECC-----CCEEEEEECCCCcEEEEeC----------C-Cce-EEEEECCCCCEEEEE-----
Confidence 333444333 4678877643 2468999999887654431 1 112 223333 55666642
Q ss_pred CCCccEEEEECCCCeEEEeecCCC-CCCCCcccEEEEECCcEEEEEecCCC------CcCCccEEEEECCCCceEEeccC
Q 011542 99 RRLGDFWVLDTDIWQWSELTSFGD-LPSPRDFAAASAIGNRKIVMYGGWDG------KKWLSDVYVLDTISLEWMQLPVT 171 (483)
Q Consensus 99 ~~~~~~~~yd~~t~~W~~l~~~~~-~p~~r~~~~~~~~~~~~iyv~GG~~~------~~~~~~v~~yd~~t~~W~~i~~~ 171 (483)
.+.+++||+.++++..+..... .+..+ ...+++..++++|+..-... ......++++|+. .+...+..
T Consensus 72 --~~~l~~~d~~~g~~~~~~~~~~~~~~~~-~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~- 146 (297)
T 3g4e_A 72 --GTKFCALNWKEQSAVVLATVDNDKKNNR-FNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFD- 146 (297)
T ss_dssp --TTEEEEEETTTTEEEEEEECCTTCSSEE-EEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEE-
T ss_pred --CCeEEEEECCCCcEEEEEecCCCCCCCC-CCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEee-
Confidence 1358999999999887764211 11111 22333445667776431111 1123568888875 34433321
Q ss_pred CCCCCCCcCceEEEe--CCEEEEEccCCCCCCcccceecccccccccC--CCCCeEEeccCCCCCC-CCeeeEEEE-eCC
Q 011542 172 GSVPPPRCGHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEEN--ETPGWTQLKLPGQAPS-SRCGHTITS-GGH 245 (483)
Q Consensus 172 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~--~~~~W~~~~~~g~~p~-~r~~~~~~~-~~~ 245 (483)
.... ...++.. ++.||+..... +.+..||. .+........-...+. ...-..+++ .++
T Consensus 147 -~~~~---pngi~~spdg~~lyv~~~~~------------~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G 210 (297)
T 3g4e_A 147 -QVDI---SNGLDWSLDHKIFYYIDSLS------------YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG 210 (297)
T ss_dssp -EESB---EEEEEECTTSCEEEEEEGGG------------TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS
T ss_pred -cccc---ccceEEcCCCCEEEEecCCC------------CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC
Confidence 1111 1233333 34688775421 23344443 4444321110001111 112223444 356
Q ss_pred EEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEEC---CEEEEEccCC
Q 011542 246 YLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLG---SLYLLFGGFD 311 (483)
Q Consensus 246 ~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~---~~i~v~GG~~ 311 (483)
.||+..... +.|.+||+.+.+....-.. |..+ -.+++..+ +.|||.....
T Consensus 211 ~lwva~~~~------------~~v~~~d~~tG~~~~~i~~---p~~~-~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 211 KLWVACYNG------------GRVIRLDPVTGKRLQTVKL---PVDK-TTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp CEEEEEETT------------TEEEEECTTTCCEEEEEEC---SSSB-EEEEEEESGGGCEEEEEEBCT
T ss_pred CEEEEEcCC------------CEEEEEcCCCceEEEEEEC---CCCC-ceEEEEeCCCCCEEEEEcCCc
Confidence 788754211 3599999986655432221 2122 22333322 5788876544
No 84
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=95.05 E-value=4.3 Score=42.98 Aligned_cols=127 Identities=14% Similarity=0.089 Sum_probs=67.8
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCC--cEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFW 105 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~ 105 (483)
+.+++||+.... +.++++|..++ .|+.-....... ...........+.++.+++||+... -..++
T Consensus 75 v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~v~v~~~------dg~l~ 141 (677)
T 1kb0_A 75 VVDGIMYVSASW------SVVHAIDTRTGNRIWTYDPQIDRST-GFKGCCDVVNRGVALWKGKVYVGAW------DGRLI 141 (677)
T ss_dssp EETTEEEEECGG------GCEEEEETTTTEEEEEECCCCCGGG-GGGSSSCSCCCCCEEETTEEEEECT------TSEEE
T ss_pred EECCEEEEECCC------CeEEEEECCCCcEEEEEcCCCCccc-cccccccCCCCCceEECCEEEEEcC------CCEEE
Confidence 335788887652 46899999877 587643211000 0000000112234567888888632 13589
Q ss_pred EEECCCCe--EEEeecCCCCCC-CCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc--eEEec
Q 011542 106 VLDTDIWQ--WSELTSFGDLPS-PRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLP 169 (483)
Q Consensus 106 ~yd~~t~~--W~~l~~~~~~p~-~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~i~ 169 (483)
.+|..|++ |+.-... +.+. .....+.++. ++.+|+..+.........++.||..|++ |+.-.
T Consensus 142 alD~~tG~~~W~~~~~~-~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 142 ALDAATGKEVWHQNTFE-GQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp EEETTTCCEEEEEETTT-TCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEECCCCCEEeeecCCc-CcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEEECCCCcEEEEecc
Confidence 99998774 7654310 1111 1111222333 4577775432222234669999998876 87654
No 85
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=95.03 E-value=0.91 Score=45.58 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=38.0
Q ss_pred CcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEEC
Q 011542 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDT 109 (483)
Q Consensus 30 ~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 109 (483)
++++|+|-| +..|.||..+++..... - +.. +. .-++....+++|+|-|. ..|+||.
T Consensus 158 ~~~~yfFkG-------~~yw~yd~~~~~~~~~~-w------~gi--~~-iDAA~~~~g~~YfFkG~-------~y~rfd~ 213 (460)
T 1qhu_A 158 DEGILFFQG-------NRKWFWDLTTGTKKERS-W------PAV--GN-CTSALRWLGRYYCFQGN-------QFLRFNP 213 (460)
T ss_dssp SSEEEEEET-------TEEEEEETTTTEEEEEC-C------TTS--CC-CSEEEEETTEEEEEETT-------EEEEECT
T ss_pred CCeEEEEec-------ccEEEEecccceeeccc-C------CCC--Cc-cchheeeCCceEEEECC-------EEEEEcC
Confidence 567888887 46899999887654211 0 111 22 23455557899999772 4788887
Q ss_pred CCC
Q 011542 110 DIW 112 (483)
Q Consensus 110 ~t~ 112 (483)
.++
T Consensus 214 ~~~ 216 (460)
T 1qhu_A 214 VSG 216 (460)
T ss_dssp TTC
T ss_pred ccC
Confidence 654
No 86
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=95.01 E-value=0.5 Score=50.27 Aligned_cols=215 Identities=13% Similarity=0.054 Sum_probs=109.5
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCC--------C
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGS--------R 99 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~--------~ 99 (483)
..|++.++|.-..++.....++++|..+++...... .+.......+..-+++.++++..... .
T Consensus 129 SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~---------~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~ 199 (695)
T 2bkl_A 129 SWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV---------IEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERP 199 (695)
T ss_dssp CTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC---------BSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGG
T ss_pred CCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc---------cCcccccceEEecCCCEEEEEEecCCCCCccccCC
Confidence 356676666544333344689999999988641111 11111122223335666666554332 2
Q ss_pred CCccEEEEECCCCeE--EEeecCCCCCC-CCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCC
Q 011542 100 RLGDFWVLDTDIWQW--SELTSFGDLPS-PRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPP 176 (483)
Q Consensus 100 ~~~~~~~yd~~t~~W--~~l~~~~~~p~-~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~ 176 (483)
....++++++.+..- ..+.. .+. .....+...-.+++..+++..... ..+.++.+|..+..|+.+.. ...
T Consensus 200 ~~~~v~~~~l~t~~~~~~lv~~---~~~~~~~~~~~~~SpDG~~l~~~~~~~~-~~~~l~~~~~~~~~~~~l~~---~~~ 272 (695)
T 2bkl_A 200 GYTTIRYHTLGTEPSKDTVVHE---RTGDPTTFLQSDLSRDGKYLFVYILRGW-SENDVYWKRPGEKDFRLLVK---GVG 272 (695)
T ss_dssp GGCEEEEEETTSCGGGCEEEEC---CCCCTTCEEEEEECTTSCCEEEEEEETT-TEEEEEEECTTCSSCEEEEE---CSS
T ss_pred CCCEEEEEECCCCchhceEEEe---cCCCCEEEEEEEECCCCCEEEEEEeCCC-CceEEEEEcCCCCceEEeec---CCC
Confidence 244689999887652 23322 222 223333333445554455443221 35678888888888988862 111
Q ss_pred CCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCC---eEEeccCCCCCCCCeeeEEEEeCCEEEEEcCC
Q 011542 177 PRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPG---WTQLKLPGQAPSSRCGHTITSGGHYLLLFGGH 253 (483)
Q Consensus 177 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~---W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~ 253 (483)
. ....+..++.+|+........ ..+..+|+++.. |+.+... .+ ...-..+...++.+++....
T Consensus 273 ~--~~~~~~~~g~l~~~s~~~~~~---------~~l~~~d~~~~~~~~~~~l~~~--~~-~~~l~~~~~~~~~lv~~~~~ 338 (695)
T 2bkl_A 273 A--KYEVHAWKDRFYVLTDEGAPR---------QRVFEVDPAKPARASWKEIVPE--DS-SASLLSVSIVGGHLSLEYLK 338 (695)
T ss_dssp C--CEEEEEETTEEEEEECTTCTT---------CEEEEEBTTBCSGGGCEEEECC--CS-SCEEEEEEEETTEEEEEEEE
T ss_pred c--eEEEEecCCcEEEEECCCCCC---------CEEEEEeCCCCCccCCeEEecC--CC-CCeEEEEEEECCEEEEEEEE
Confidence 1 122223455566654432111 234445766544 8877621 11 12222334457888776653
Q ss_pred CCCCCCcccceeeCcEEEEEcCCCceEEc
Q 011542 254 GTGGWLSRYDIYYNDTIILDRLSAQWKRL 282 (483)
Q Consensus 254 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~v 282 (483)
+. ...+|++++....-..+
T Consensus 339 dg----------~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 339 DA----------TSEVRVATLKGKPVRTV 357 (695)
T ss_dssp TT----------EEEEEEEETTCCEEEEC
T ss_pred CC----------EEEEEEEeCCCCeeEEe
Confidence 32 35688888765544444
No 87
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=94.98 E-value=3.1 Score=40.96 Aligned_cols=174 Identities=13% Similarity=0.049 Sum_probs=82.4
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCce
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEW 165 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 165 (483)
++..++.|+.++ .+.++|+.+++-...-. .......++.. ++..++.|+.++ .+.+||+.+.+-
T Consensus 208 ~~~~l~s~s~dg-----~i~~wd~~~~~~~~~~~-----~~~~~v~~~~~-~~~~l~~~~~dg-----~i~iwd~~~~~~ 271 (445)
T 2ovr_B 208 HEKRVVSGSRDA-----TLRVWDIETGQCLHVLM-----GHVAAVRCVQY-DGRRVVSGAYDF-----MVKVWDPETETC 271 (445)
T ss_dssp ETTEEEEEETTS-----EEEEEESSSCCEEEEEE-----CCSSCEEEEEE-CSSCEEEEETTS-----CEEEEEGGGTEE
T ss_pred cCCEEEEEeCCC-----EEEEEECCCCcEEEEEc-----CCcccEEEEEE-CCCEEEEEcCCC-----EEEEEECCCCcE
Confidence 344455565432 47888887765433221 11111222334 446677777543 478888877654
Q ss_pred EEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCC
Q 011542 166 MQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGH 245 (483)
Q Consensus 166 ~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~ 245 (483)
...- ......-.++..++..++.|+.. ..+..||+.+.+-...-. .... ...++... +
T Consensus 272 ~~~~-----~~~~~~v~~~~~~~~~l~~~~~d------------~~i~i~d~~~~~~~~~~~---~~~~-~v~~~~~~-~ 329 (445)
T 2ovr_B 272 LHTL-----QGHTNRVYSLQFDGIHVVSGSLD------------TSIRVWDVETGNCIHTLT---GHQS-LTSGMELK-D 329 (445)
T ss_dssp EEEE-----CCCSSCEEEEEECSSEEEEEETT------------SCEEEEETTTCCEEEEEC---CCCS-CEEEEEEE-T
T ss_pred eEEe-----cCCCCceEEEEECCCEEEEEeCC------------CeEEEEECCCCCEEEEEc---CCcc-cEEEEEEe-C
Confidence 3321 11111122333366666666643 234456776654332211 1111 11122233 4
Q ss_pred EEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceE-EccCCCCCCCCCcceEEEEECCEEEEEccCCC
Q 011542 246 YLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWK-RLPIGNEPPPARAYHSMTCLGSLYLLFGGFDG 312 (483)
Q Consensus 246 ~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~-~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~ 312 (483)
..++.|+.+ ..+.+||+.+.+-. .+... ......-.++..++.+++.|+.++
T Consensus 330 ~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~l~s~~~dg 382 (445)
T 2ovr_B 330 NILVSGNAD------------STVKIWDIKTGQCLQTLQGP---NKHQSAVTCLQFNKNFVITSSDDG 382 (445)
T ss_dssp TEEEEEETT------------SCEEEEETTTCCEEEEECST---TSCSSCEEEEEECSSEEEEEETTS
T ss_pred CEEEEEeCC------------CeEEEEECCCCcEEEEEccC---CCCCCCEEEEEECCCEEEEEeCCC
Confidence 455555533 35888998765432 22221 101122234445677788887665
No 88
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=94.98 E-value=1.6 Score=40.26 Aligned_cols=198 Identities=9% Similarity=-0.063 Sum_probs=99.5
Q ss_pred eEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEE----ccccC--
Q 011542 24 SAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIF----GGRFG-- 97 (483)
Q Consensus 24 ~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~----GG~~~-- 97 (483)
.++...++.+|+.... ...+.+||+.+++...+..... ..+..+....++.-++++|+. |....
T Consensus 73 ~l~~~~dg~l~v~~~~-----~~~i~~~d~~~g~~~~~~~~~~-----~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~ 142 (296)
T 3e5z_A 73 GHCLNKQGHLIACSHG-----LRRLERQREPGGEWESIADSFE-----GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEE 142 (296)
T ss_dssp EEEECTTCCEEEEETT-----TTEEEEECSTTCCEEEEECEET-----TEECCCCCCEEECTTSCEEEEECSHHHHCGGG
T ss_pred eeeECCCCcEEEEecC-----CCeEEEEcCCCCcEEEEeeccC-----CCCCCCCCCEEECCCCCEEEECCccccccccc
Confidence 3444456777765432 1358899998888776642211 011112222333336788886 43210
Q ss_pred ------CCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECC-CCce-EEec
Q 011542 98 ------SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI-SLEW-MQLP 169 (483)
Q Consensus 98 ------~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-t~~W-~~i~ 169 (483)
......++++|+. ++...+.. .. ....+++...++++++.... .+.+++||+. +++. ....
T Consensus 143 ~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~---~~~~gi~~s~dg~~lv~~~~-----~~~i~~~~~~~~g~~~~~~~ 211 (296)
T 3e5z_A 143 GYGGEMELPGRWVFRLAPD-GTLSAPIR--DR---VKPNGLAFLPSGNLLVSDTG-----DNATHRYCLNARGETEYQGV 211 (296)
T ss_dssp SSCCCCCSSSCEEEEECTT-SCEEEEEC--CC---SSEEEEEECTTSCEEEEETT-----TTEEEEEEECSSSCEEEEEE
T ss_pred cccccccCCCcEEEEECCC-CCEEEeec--CC---CCCccEEECCCCCEEEEeCC-----CCeEEEEEECCCCcCcCCCe
Confidence 1112469999988 55555442 11 11123444445566654432 3468899886 5555 2211
Q ss_pred cCCCCCCCCcCceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE---eCC
Q 011542 170 VTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS---GGH 245 (483)
Q Consensus 170 ~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~---~~~ 245 (483)
.- ..... .-..++.. +++|||..+ ..+.+||++......+.. |.. -.+++. .++
T Consensus 212 ~~-~~~~~-~p~~i~~d~~G~l~v~~~--------------~~v~~~~~~g~~~~~~~~----~~~--~~~~~f~~~d~~ 269 (296)
T 3e5z_A 212 HF-TVEPG-KTDGLRVDAGGLIWASAG--------------DGVHVLTPDGDELGRVLT----PQT--TSNLCFGGPEGR 269 (296)
T ss_dssp EE-CCSSS-CCCSEEEBTTSCEEEEET--------------TEEEEECTTSCEEEEEEC----SSC--CCEEEEESTTSC
T ss_pred Ee-eCCCC-CCCeEEECCCCCEEEEcC--------------CeEEEECCCCCEEEEEEC----CCC--ceeEEEECCCCC
Confidence 10 11111 11133333 678888761 345567887655555542 222 112222 123
Q ss_pred EEEEEcCCCCCCCCcccceeeCcEEEEEcCCCc
Q 011542 246 YLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (483)
Q Consensus 246 ~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (483)
.||+... +.+|+|+++++.
T Consensus 270 ~L~v~t~--------------~~l~~~~~~~~~ 288 (296)
T 3e5z_A 270 TLYMTVS--------------TEFWSIETNVRG 288 (296)
T ss_dssp EEEEEET--------------TEEEEEECSCCB
T ss_pred EEEEEcC--------------CeEEEEEccccc
Confidence 6777432 358999987765
No 89
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=94.98 E-value=0.99 Score=41.91 Aligned_cols=132 Identities=11% Similarity=0.009 Sum_probs=69.8
Q ss_pred eeEEEECCcEEEEEcccC--CCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-C-CEEEEEccccCC
Q 011542 23 HSAVNIGKSKVVVFGGLV--DKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-D-CHMFIFGGRFGS 98 (483)
Q Consensus 23 h~~~~~~~~~l~v~GG~~--~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~-~~iyv~GG~~~~ 98 (483)
...+...++.+|+..... .......+++||+.++++..+..... .. ....-+.++.. + +++|+....
T Consensus 21 ~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-----~~-~~~~~~~i~~~~~~g~l~v~~~~--- 91 (314)
T 1pjx_A 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEV-----NG-YGGIPAGCQCDRDANQLFVADMR--- 91 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEE-----TT-EECCEEEEEECSSSSEEEEEETT---
T ss_pred cCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEeccc-----CC-CCCCCceEEEecCCCcEEEEECC---
Confidence 444445667888871100 01112458999999998876542000 00 01112334443 4 688887541
Q ss_pred CCCccEEEEECCCCeEEEe-ecCCCCCCCCcccEEEEECCcEEEEEecCCC----------CcCCccEEEEECCCCceEE
Q 011542 99 RRLGDFWVLDTDIWQWSEL-TSFGDLPSPRDFAAASAIGNRKIVMYGGWDG----------KKWLSDVYVLDTISLEWMQ 167 (483)
Q Consensus 99 ~~~~~~~~yd~~t~~W~~l-~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~----------~~~~~~v~~yd~~t~~W~~ 167 (483)
+.+++||+. ++...+ ...........-..++...++.+|+...... ......+++||+. .+...
T Consensus 92 ---~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~ 166 (314)
T 1pjx_A 92 ---LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ 166 (314)
T ss_dssp ---TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred ---CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence 258999998 777665 3211111112233445555678888654321 1123578999987 66655
Q ss_pred e
Q 011542 168 L 168 (483)
Q Consensus 168 i 168 (483)
+
T Consensus 167 ~ 167 (314)
T 1pjx_A 167 V 167 (314)
T ss_dssp E
T ss_pred e
Confidence 4
No 90
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=94.96 E-value=1.3 Score=42.04 Aligned_cols=103 Identities=10% Similarity=-0.048 Sum_probs=53.7
Q ss_pred ceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCC
Q 011542 47 DVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSP 126 (483)
Q Consensus 47 ~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~ 126 (483)
.+|.+|..++++..+..... ...+ ...+..-+++||+.+...+ -..+++||+.++++..+... ....
T Consensus 19 ~v~~~d~~tg~~~~~~~~~~------~~~p--~~~a~spdg~l~~~~~~~~---~~~v~~~~~~~g~~~~~~~~--~~~~ 85 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLAA------TQNP--TYLALSAKDCLYSVDKEDD---EGGIAAWQIDGQTAHKLNTV--VAPG 85 (347)
T ss_dssp EEEEEETTTTEEEEEEEEEE------CSCC--CCEEECTTCEEEEEEEETT---EEEEEEEEEETTEEEEEEEE--EEES
T ss_pred EEEEEcCCCCeEEEeeeeec------cCCc--ceEEEccCCeEEEEEecCC---CceEEEEEecCCcEEEeeee--ecCC
Confidence 47788888888877553321 1111 1222233667777654211 23589999988887766531 0011
Q ss_pred CcccEEEEECCc-EEEEEecCCCCcCCccEEEEECC-CCceEE
Q 011542 127 RDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTI-SLEWMQ 167 (483)
Q Consensus 127 r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~-t~~W~~ 167 (483)
..-..++.-.++ .+|+.+.. ...+.+||+. +++...
T Consensus 86 ~~p~~~a~spdg~~l~~~~~~-----~~~v~v~~~~~~g~~~~ 123 (347)
T 3hfq_A 86 TPPAYVAVDEARQLVYSANYH-----KGTAEVMKIAADGALTL 123 (347)
T ss_dssp CCCSEEEEETTTTEEEEEETT-----TTEEEEEEECTTSCEEE
T ss_pred CCCEEEEECCCCCEEEEEeCC-----CCEEEEEEeCCCCCeee
Confidence 112234444444 56665422 2357777774 334443
No 91
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=94.96 E-value=1.7 Score=41.60 Aligned_cols=177 Identities=11% Similarity=0.038 Sum_probs=83.2
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECC-cEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGN-RKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
+++.++.|+.++ .+.++|+.+++-...-. ... ..-.+++...+ ..+++.|+.++ .+.++|+.+.+
T Consensus 138 dg~~l~sgs~d~-----~i~iwd~~~~~~~~~~~---~h~-~~V~~~~~~~~~~~~l~s~s~D~-----~v~iwd~~~~~ 203 (344)
T 4gqb_B 138 SGTQAVSGSKDI-----CIKVWDLAQQVVLSSYR---AHA-AQVTCVAASPHKDSVFLSCSEDN-----RILLWDTRCPK 203 (344)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTTEEEEEEC---CCS-SCEEEEEECSSCTTEEEEEETTS-----CEEEEETTSSS
T ss_pred CCCEEEEEeCCC-----eEEEEECCCCcEEEEEc---CcC-CceEEEEecCCCCCceeeecccc-----ccccccccccc
Confidence 567777777554 47889998875433211 111 11122222223 25777787654 47889998776
Q ss_pred eEEeccCCCCCCCCcC-ceEEEe--CCEEEEEccCCCCCCcccceecccccccccCCCCCe-EEeccCCCCCCCCeeeEE
Q 011542 165 WMQLPVTGSVPPPRCG-HTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGW-TQLKLPGQAPSSRCGHTI 240 (483)
Q Consensus 165 W~~i~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W-~~~~~~g~~p~~r~~~~~ 240 (483)
-...- ........ .+++.. ++++++.|+.++ .+..||+.+.+- ..+. ... ..-.++
T Consensus 204 ~~~~~---~~~~~~~~~~~~~~~p~~~~~l~sg~~dg------------~v~~wd~~~~~~~~~~~---~h~--~~v~~v 263 (344)
T 4gqb_B 204 PASQI---GCSAPGYLPTSLAWHPQQSEVFVFGDENG------------TVSLVDTKSTSCVLSSA---VHS--QCVTGL 263 (344)
T ss_dssp CEEEC---C----CCCEEEEEECSSCTTEEEEEETTS------------EEEEEESCC--CCEEEE---CCS--SCEEEE
T ss_pred eeeee---ecceeeccceeeeecCCCCcceEEeccCC------------cEEEEECCCCcEEEEEc---CCC--CCEEEE
Confidence 54332 11111111 122232 456777776532 234456654431 1111 001 111123
Q ss_pred EEe--CCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEE--CCEEEEEccCCCC
Q 011542 241 TSG--GHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL--GSLYLLFGGFDGK 313 (483)
Q Consensus 241 ~~~--~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~--~~~i~v~GG~~~~ 313 (483)
+.. +..+++.|+.+ ..|.+||..+.+-..+.... ..-.+++.. +..+++-||.++.
T Consensus 264 ~fsp~g~~~lasgs~D------------~~i~vwd~~~~~~~~~~~H~-----~~V~~v~~sp~~~~llas~s~D~~ 323 (344)
T 4gqb_B 264 VFSPHSVPFLASLSED------------CSLAVLDSSLSELFRSQAHR-----DFVRDATWSPLNHSLLTTVGWDHQ 323 (344)
T ss_dssp EECSSSSCCEEEEETT------------SCEEEECTTCCEEEEECCCS-----SCEEEEEECSSSTTEEEEEETTSC
T ss_pred EEccCCCeEEEEEeCC------------CeEEEEECCCCcEEEEcCCC-----CCEEEEEEeCCCCeEEEEEcCCCe
Confidence 332 33556656543 34778888776544332221 122233332 3457777887664
No 92
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=94.94 E-value=2.1 Score=39.96 Aligned_cols=202 Identities=10% Similarity=-0.006 Sum_probs=95.8
Q ss_pred eEEEECCcE-EEEEcccCCCccccceEEEEcCCCcE-EeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCC
Q 011542 24 SAVNIGKSK-VVVFGGLVDKRFLSDVVVYDIDNKLW-FQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSR 99 (483)
Q Consensus 24 ~~~~~~~~~-l~v~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~ 99 (483)
.++...+++ +|+.+..+ ..++++|+.+++- ...... ...+ .++++.. +..+| .+...+
T Consensus 44 ~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~--------~~~~--~~~~~~s~dg~~l~-~~~~~~-- 105 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFC-----QTLVQIETQLEPPKVVAIQE--------GQSS--MADVDITPDDQFAV-TVTGLN-- 105 (331)
T ss_dssp EEEECSSSCEEEEEESTT-----CEEEEEECSSSSCEEEEEEE--------CSSC--CCCEEECTTSSEEE-ECCCSS--
T ss_pred eEEEcCCCCEEEEEeCCC-----CeEEEEECCCCceeEEeccc--------CCCC--ccceEECCCCCEEE-EecCCC--
Confidence 334444454 66655422 3789999998875 222111 1112 2212222 34566 332221
Q ss_pred CCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCcc-EEEEECCCCce-EEeccCCCCCC
Q 011542 100 RLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSD-VYVLDTISLEW-MQLPVTGSVPP 176 (483)
Q Consensus 100 ~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~-v~~yd~~t~~W-~~i~~~~~~p~ 176 (483)
....++++|+.+++-...... ....+.++.-.++ .+|+.+.. .+. +.+|+.....- .... ....+.
T Consensus 106 ~~~~i~v~d~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~~~~~~-----~~~~i~~~~~~~~g~~~~~~-~~~~~~ 174 (331)
T 3u4y_A 106 HPFNMQSYSFLKNKFISTIPI-----PYDAVGIAISPNGNGLILIDRS-----SANTVRRFKIDADGVLFDTG-QEFISG 174 (331)
T ss_dssp SSCEEEEEETTTTEEEEEEEC-----CTTEEEEEECTTSSCEEEEEET-----TTTEEEEEEECTTCCEEEEE-EEEECS
T ss_pred CcccEEEEECCCCCeEEEEEC-----CCCccceEECCCCCEEEEEecC-----CCceEEEEEECCCCcEeecC-CccccC
Confidence 112699999998876554331 2222444444454 57776543 234 66666553221 1110 000111
Q ss_pred CCcCceEEEe-CC-EEEEEccCCCCCCcccceecccccccccCCCCCe---EEeccCCCCCCCCeeeEEEE--eCCEEEE
Q 011542 177 PRCGHTATMV-EK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGW---TQLKLPGQAPSSRCGHTITS--GGHYLLL 249 (483)
Q Consensus 177 ~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W---~~~~~~g~~p~~r~~~~~~~--~~~~i~v 249 (483)
...-..+++. ++ .+|+.+... ..+.+||+.+.+. ...-..+ .....+++ .+..+|+
T Consensus 175 ~~~~~~~~~spdg~~l~v~~~~~------------~~v~v~d~~~~~~~~~~~~~~~~-----~~~~~~~~spdg~~l~v 237 (331)
T 3u4y_A 175 GTRPFNITFTPDGNFAFVANLIG------------NSIGILETQNPENITLLNAVGTN-----NLPGTIVVSRDGSTVYV 237 (331)
T ss_dssp SSSEEEEEECTTSSEEEEEETTT------------TEEEEEECSSTTSCEEEEEEECS-----SCCCCEEECTTSSEEEE
T ss_pred CCCccceEECCCCCEEEEEeCCC------------CeEEEEECCCCcccceeeeccCC-----CCCceEEECCCCCEEEE
Confidence 1111333333 33 577765421 3455678776665 2211111 11122333 2345666
Q ss_pred EcCCCCCCCCcccceeeCcEEEEEcCCCceEEcc
Q 011542 250 FGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLP 283 (483)
Q Consensus 250 ~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~ 283 (483)
.... .+.++++|+.+.+...+.
T Consensus 238 ~~~~------------~~~i~~~d~~~~~~~~~~ 259 (331)
T 3u4y_A 238 LTES------------TVDVFNFNQLSGTLSFVK 259 (331)
T ss_dssp ECSS------------EEEEEEEETTTTEEEEEE
T ss_pred EEcC------------CCEEEEEECCCCceeeec
Confidence 5431 245889999888775443
No 93
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=94.94 E-value=1.3 Score=47.12 Aligned_cols=130 Identities=17% Similarity=0.055 Sum_probs=70.2
Q ss_pred eeEEEECCcEEEEEccc-CCCccccceEEEEcCCCcEEeeeecCCCC-CCC------CCCC--Cc------ceeEEEEEC
Q 011542 23 HSAVNIGKSKVVVFGGL-VDKRFLSDVVVYDIDNKLWFQPECTGNGS-NGQ------VGPG--PR------AFHIAVAID 86 (483)
Q Consensus 23 h~~~~~~~~~l~v~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~~~~~-~~~------~~p~--~R------~~h~~~~~~ 86 (483)
.......||+.+++++. +++.....++++|+.+++...+....... ++. .... .| .......-+
T Consensus 40 ~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpD 119 (741)
T 2ecf_A 40 MKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPD 119 (741)
T ss_dssp EEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTT
T ss_pred CCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCC
Confidence 34445567777777765 44333458999999999887765432100 000 0000 00 111222225
Q ss_pred CEEEEEccccCCCCCccEEEEECCCC---eEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCC
Q 011542 87 CHMFIFGGRFGSRRLGDFWVLDTDIW---QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 87 ~~iyv~GG~~~~~~~~~~~~yd~~t~---~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
++.++++.. ..++++|..++ .-.++.. ........+.-.|++.++++.. +.++++|+.++
T Consensus 120 g~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~-----~~~~~~~~~~SPDG~~la~~~~------~~i~~~d~~~g 182 (741)
T 2ecf_A 120 AQRLLFPLG------GELYLYDLKQEGKAAVRQLTH-----GEGFATDAKLSPKGGFVSFIRG------RNLWVIDLASG 182 (741)
T ss_dssp SSEEEEEET------TEEEEEESSSCSTTSCCBCCC-----SSSCEEEEEECTTSSEEEEEET------TEEEEEETTTT
T ss_pred CCEEEEEeC------CcEEEEECCCCCcceEEEccc-----CCcccccccCCCCCCEEEEEeC------CcEEEEecCCC
Confidence 555555542 57999999877 4433331 1111223333345555555532 37999999999
Q ss_pred ceEEec
Q 011542 164 EWMQLP 169 (483)
Q Consensus 164 ~W~~i~ 169 (483)
+...+.
T Consensus 183 ~~~~~~ 188 (741)
T 2ecf_A 183 RQMQLT 188 (741)
T ss_dssp EEEECC
T ss_pred CEEEec
Confidence 888775
No 94
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=94.93 E-value=1.5 Score=46.38 Aligned_cols=231 Identities=10% Similarity=-0.012 Sum_probs=111.3
Q ss_pred cccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCC
Q 011542 44 FLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDL 123 (483)
Q Consensus 44 ~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~ 123 (483)
....+|+.+.....|..+....... ...........++-+++.++|....++..-..++++|+.+++... . ...
T Consensus 92 ~~~~l~~~~~~~~~~~~l~d~~~~a---~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~--~~~ 165 (695)
T 2bkl_A 92 EKAILYWRQGESGQEKVLLDPNGWS---KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-V--DVI 165 (695)
T ss_dssp SSCEEEEEESTTSCCEEEECGGGSS---SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-S--CCB
T ss_pred eEEEEEEEcCCCCCcEEEEchHHhc---cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-C--ccc
Confidence 3467899998888888876321100 000101111222235666666544333334579999999987531 1 012
Q ss_pred CCCCcccEEEEECCcEEEEEecCCCC--------cCCccEEEEECCCCce--EEeccCCCCCC-CCcCceEEEe-CCEEE
Q 011542 124 PSPRDFAAASAIGNRKIVMYGGWDGK--------KWLSDVYVLDTISLEW--MQLPVTGSVPP-PRCGHTATMV-EKRLL 191 (483)
Q Consensus 124 p~~r~~~~~~~~~~~~iyv~GG~~~~--------~~~~~v~~yd~~t~~W--~~i~~~~~~p~-~r~~~~~~~~-~~~ly 191 (483)
+.... ...+-..|++.++++..+.. .....++++++.+..- ..+. ..+. +....+.... +++.+
T Consensus 166 ~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~---~~~~~~~~~~~~~~SpDG~~l 241 (695)
T 2bkl_A 166 EGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH---ERTGDPTTFLQSDLSRDGKYL 241 (695)
T ss_dssp SCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE---CCCCCTTCEEEEEECTTSCCE
T ss_pred Ccccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE---ecCCCCEEEEEEEECCCCCEE
Confidence 22211 23334456666666665432 2345699999988763 2332 1111 1122222222 44444
Q ss_pred EEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEE
Q 011542 192 IYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTII 271 (483)
Q Consensus 192 v~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~ 271 (483)
++...... .. +.++.+|..+..|..+... ..... ..+..++.+|+....+. ....+++
T Consensus 242 ~~~~~~~~--~~------~~l~~~~~~~~~~~~l~~~---~~~~~--~~~~~~g~l~~~s~~~~---------~~~~l~~ 299 (695)
T 2bkl_A 242 FVYILRGW--SE------NDVYWKRPGEKDFRLLVKG---VGAKY--EVHAWKDRFYVLTDEGA---------PRQRVFE 299 (695)
T ss_dssp EEEEEETT--TE------EEEEEECTTCSSCEEEEEC---SSCCE--EEEEETTEEEEEECTTC---------TTCEEEE
T ss_pred EEEEeCCC--Cc------eEEEEEcCCCCceEEeecC---CCceE--EEEecCCcEEEEECCCC---------CCCEEEE
Confidence 44332221 12 2333446667778877621 11111 22224555666543221 2357899
Q ss_pred EEcCCCc---eEEccCCCCCCCCCcceEEEEECCEEEEEcc
Q 011542 272 LDRLSAQ---WKRLPIGNEPPPARAYHSMTCLGSLYLLFGG 309 (483)
Q Consensus 272 yd~~~~~---W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG 309 (483)
+|+.+.. |..+-.... ..........++++++...
T Consensus 300 ~d~~~~~~~~~~~l~~~~~---~~~l~~~~~~~~~lv~~~~ 337 (695)
T 2bkl_A 300 VDPAKPARASWKEIVPEDS---SASLLSVSIVGGHLSLEYL 337 (695)
T ss_dssp EBTTBCSGGGCEEEECCCS---SCEEEEEEEETTEEEEEEE
T ss_pred EeCCCCCccCCeEEecCCC---CCeEEEEEEECCEEEEEEE
Confidence 9987654 887754321 1111222333666655544
No 95
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=94.89 E-value=1.1 Score=42.74 Aligned_cols=114 Identities=8% Similarity=0.048 Sum_probs=62.6
Q ss_pred EEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE-ECCEEEEEccccCCCCCcc
Q 011542 25 AVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSRRLGD 103 (483)
Q Consensus 25 ~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~~iyv~GG~~~~~~~~~ 103 (483)
++...++.+++.||.++ .+.++|..++.|........ .. ...-.+++. -+++.++.|+.++ .
T Consensus 22 l~~sp~g~~las~~~D~-----~i~iw~~~~~~~~~~~~~~~------~h-~~~v~~~~~sp~g~~l~s~s~D~-----~ 84 (345)
T 3fm0_A 22 LAWNPAGTLLASCGGDR-----RIRIWGTEGDSWICKSVLSE------GH-QRTVRKVAWSPCGNYLASASFDA-----T 84 (345)
T ss_dssp EEECTTSSCEEEEETTS-----CEEEEEEETTEEEEEEEECS------SC-SSCEEEEEECTTSSEEEEEETTS-----C
T ss_pred EEECCCCCEEEEEcCCC-----eEEEEEcCCCcceeeeeecc------cc-CCcEEEEEECCCCCEEEEEECCC-----c
Confidence 33445677888888653 47888988888865432211 11 111122222 2566777777554 3
Q ss_pred EEEEECCCCeEEEeecCCCCCCC-CcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCC
Q 011542 104 FWVLDTDIWQWSELTSFGDLPSP-RDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 104 ~~~yd~~t~~W~~l~~~~~~p~~-r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
+.++|..+..+..+.. +... ..-.+++...++.+++.|+.++ .+.++|+.+.
T Consensus 85 v~iw~~~~~~~~~~~~---~~~h~~~v~~v~~sp~~~~l~s~s~D~-----~v~iwd~~~~ 137 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTT---LEGHENEVKSVAWAPSGNLLATCSRDK-----SVWVWEVDEE 137 (345)
T ss_dssp EEEEEECCC-EEEEEE---ECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEECTT
T ss_pred EEEEEccCCCeEEEEE---ccCCCCCceEEEEeCCCCEEEEEECCC-----eEEEEECCCC
Confidence 6677777776654432 1111 1122333334567788887654 4777887654
No 96
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=94.80 E-value=1.6 Score=39.46 Aligned_cols=191 Identities=10% Similarity=-0.018 Sum_probs=96.2
Q ss_pred eEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCc
Q 011542 24 SAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLG 102 (483)
Q Consensus 24 ~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~ 102 (483)
.+++..++.+|+... + ..+.+||+.......+.. .....-+.+++. ++++|+..... +
T Consensus 71 ~i~~~~~g~l~v~~~-~-----~~i~~~d~~~~~~~~~~~----------~~~~~p~~i~~~~~g~l~v~~~~~-----~ 129 (270)
T 1rwi_B 71 GLAVDGAGTVYVTDF-N-----NRVVTLAAGSNNQTVLPF----------DGLNYPEGLAVDTQGAVYVADRGN-----N 129 (270)
T ss_dssp CEEECTTCCEEEEET-T-----TEEEEECTTCSCCEECCC----------CSCSSEEEEEECTTCCEEEEEGGG-----T
T ss_pred eeEECCCCCEEEEcC-C-----CEEEEEeCCCceEeeeec----------CCcCCCcceEECCCCCEEEEECCC-----C
Confidence 444445566777654 1 357888887765443321 111122344444 56788875322 2
Q ss_pred cEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCce
Q 011542 103 DFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHT 182 (483)
Q Consensus 103 ~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~ 182 (483)
.++++|..+........ .....-.+++...++++|+.... .+.+.+||+.+..-...... .. ..-..
T Consensus 130 ~i~~~~~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~~~-~~---~~p~~ 196 (270)
T 1rwi_B 130 RVVKLAAGSKTQTVLPF----TGLNDPDGVAVDNSGNVYVTDTD-----NNRVVKLEAESNNQVVLPFT-DI---TAPWG 196 (270)
T ss_dssp EEEEECTTCCSCEECCC----CSCCSCCCEEECTTCCEEEEEGG-----GTEEEEECTTTCCEEECCCS-SC---CSEEE
T ss_pred EEEEEECCCceeEeecc----ccCCCceeEEEeCCCCEEEEECC-----CCEEEEEecCCCceEeeccc-CC---CCceE
Confidence 47888876654433221 11112234444456688887542 34689999887765443211 11 11123
Q ss_pred EEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCCCCCCCCc
Q 011542 183 ATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLS 260 (483)
Q Consensus 183 ~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~ 260 (483)
++.. ++.+|+..... +.+..||+.+..-..... .....-.++++ -++.+|+....
T Consensus 197 i~~d~~g~l~v~~~~~------------~~v~~~~~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~------- 253 (270)
T 1rwi_B 197 IAVDEAGTVYVTEHNT------------NQVVKLLAGSTTSTVLPF----TGLNTPLAVAVDSDRTVYVADRG------- 253 (270)
T ss_dssp EEECTTCCEEEEETTT------------SCEEEECTTCSCCEECCC----CSCSCEEEEEECTTCCEEEEEGG-------
T ss_pred EEECCCCCEEEEECCC------------CcEEEEcCCCCcceeecc----CCCCCceeEEECCCCCEEEEECC-------
Confidence 3333 45888875321 334556776654333221 11122234444 34577776542
Q ss_pred ccceeeCcEEEEEcCC
Q 011542 261 RYDIYYNDTIILDRLS 276 (483)
Q Consensus 261 ~~~~~~~~v~~yd~~~ 276 (483)
.+.|.+|+...
T Consensus 254 -----~~~v~~~~~~~ 264 (270)
T 1rwi_B 254 -----NDRVVKLTSLE 264 (270)
T ss_dssp -----GTEEEEECCCG
T ss_pred -----CCEEEEEcCCC
Confidence 24577777543
No 97
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=94.71 E-value=1.5 Score=46.62 Aligned_cols=212 Identities=9% Similarity=0.076 Sum_probs=107.3
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCC--------C
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGS--------R 99 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~--------~ 99 (483)
..|++.++|+-..++.....++++|..+++...... +..+....+.. +++-++++..... .
T Consensus 137 SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~----------~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 137 SRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL----------KDVKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp CTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE----------EEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred CCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc----------CCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 456666666443333344689999999998765431 11112233344 5543333333221 2
Q ss_pred CCccEEEEECCCCeE--EEeecCCCCCC--CCcccEEEEECCcE-EEEEecCCCCcCCccEEEEECCCC--ceEEeccCC
Q 011542 100 RLGDFWVLDTDIWQW--SELTSFGDLPS--PRDFAAASAIGNRK-IVMYGGWDGKKWLSDVYVLDTISL--EWMQLPVTG 172 (483)
Q Consensus 100 ~~~~~~~yd~~t~~W--~~l~~~~~~p~--~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~t~--~W~~i~~~~ 172 (483)
....++++++.+..= ..+.. .+. +........-.|++ |++...... ..+.++.+|..+. .|..+.
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~---~~~~~~~~~~~~~~SpDg~~l~~~~~~~~--~~~~i~~~d~~~~~~~~~~l~--- 277 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFG---AIPAQHHRYVGATVTEDDRFLLISAANST--SGNRLYVKDLSQENAPLLTVQ--- 277 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEES---CSGGGCCSEEEEEECTTSCEEEEEEESSS--SCCEEEEEETTSTTCCCEEEE---
T ss_pred CCcEEEEEECCCCcccceEEEe---cCCCCCeEEEEEEEcCCCCEEEEEEccCC--CCcEEEEEECCCCCCceEEEe---
Confidence 345688888766542 22221 111 22222333334454 444333221 2368999998776 788875
Q ss_pred CCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCC---CCeEEeccCCCCCCCCeeeEEEEeCCEEEE
Q 011542 173 SVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENET---PGWTQLKLPGQAPSSRCGHTITSGGHYLLL 249 (483)
Q Consensus 173 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~---~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v 249 (483)
....... ......+++||+........ ..+...|+++ ..|+.+... ..... +....++.|++
T Consensus 278 ~~~~~~~-~~~~~~g~~l~~~t~~~~~~---------~~l~~~d~~~~~~~~~~~l~~~---~~~~~--~~s~~g~~lv~ 342 (693)
T 3iuj_A 278 GDLDADV-SLVDNKGSTLYLLTNRDAPN---------RRLVTVDAANPGPAHWRDLIPE---RQQVL--TVHSGSGYLFA 342 (693)
T ss_dssp CSSSSCE-EEEEEETTEEEEEECTTCTT---------CEEEEEETTSCCGGGCEEEECC---CSSCE--EEEEETTEEEE
T ss_pred CCCCceE-EEEeccCCEEEEEECCCCCC---------CEEEEEeCCCCCccccEEEecC---CCCEE--EEEEECCEEEE
Confidence 2211111 11233478999987653211 2233445554 348876521 11112 44456777766
Q ss_pred EcCCCCCCCCcccceeeCcEEEEEcCCCceEEcc
Q 011542 250 FGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLP 283 (483)
Q Consensus 250 ~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~ 283 (483)
..-.+. ...++++|+.......+.
T Consensus 343 ~~~~~g----------~~~l~~~d~~g~~~~~l~ 366 (693)
T 3iuj_A 343 EYMVDA----------TARVEQFDYEGKRVREVA 366 (693)
T ss_dssp EEEETT----------EEEEEEECTTSCEEEEEC
T ss_pred EEEECC----------eeEEEEEECCCCeeEEee
Confidence 443221 246888998766555554
No 98
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=94.70 E-value=0.83 Score=48.93 Aligned_cols=216 Identities=11% Similarity=0.036 Sum_probs=108.8
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCC---------
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGS--------- 98 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~--------- 98 (483)
..|++.++|+...++.....++++|..+++....... ..+....+..-+ +-++++.....
T Consensus 171 SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~----------~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 171 SDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK----------WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp CTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE----------EEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC----------CceeccEEEECC-CEEEEEEecCcccccccccC
Confidence 3567777776554443345799999999988654211 001111111113 33333333221
Q ss_pred CCCccEEEEECCCCeE--EEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCC--c-eEEeccCCC
Q 011542 99 RRLGDFWVLDTDIWQW--SELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL--E-WMQLPVTGS 173 (483)
Q Consensus 99 ~~~~~~~~yd~~t~~W--~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~--~-W~~i~~~~~ 173 (483)
.....+++++..+..- ..+.. ....+........-.|++..++.........+.++.+|..+. . |+.+. .
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~--~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---~ 314 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFA--TPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI---P 314 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEEC--CTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE---C
T ss_pred CCCCEEEEEECCCCchhCEEEec--cCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec---C
Confidence 1234588888866542 22221 111122233333345554444444333224678999999887 7 88886 2
Q ss_pred CCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCC--CCeEEeccCCCCCCCCeeeEEEEeCCEEEEEc
Q 011542 174 VPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENET--PGWTQLKLPGQAPSSRCGHTITSGGHYLLLFG 251 (483)
Q Consensus 174 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~--~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~G 251 (483)
....... .....++.||+........ ..+..+|+++ ..|+.+... ... .-..+...++.+++..
T Consensus 315 ~~~~~~~-~~~~dg~~l~~~s~~~~~~---------~~l~~~d~~~~~~~~~~l~~~---~~~-~l~~~~~~~~~lv~~~ 380 (741)
T 1yr2_A 315 DLKAQWD-FVDGVGDQLWFVSGDGAPL---------KKIVRVDLSGSTPRFDTVVPE---SKD-NLESVGIAGNRLFASY 380 (741)
T ss_dssp SSSSCEE-EEEEETTEEEEEECTTCTT---------CEEEEEECSSSSCEEEEEECC---CSS-EEEEEEEEBTEEEEEE
T ss_pred CCCceEE-EEeccCCEEEEEECCCCCC---------CEEEEEeCCCCccccEEEecC---CCC-eEEEEEEECCEEEEEE
Confidence 2222111 1223467888876542211 2344557766 478877621 111 1122334577777765
Q ss_pred CCCCCCCCcccceeeCcEEEEEcCCCceEEcc
Q 011542 252 GHGTGGWLSRYDIYYNDTIILDRLSAQWKRLP 283 (483)
Q Consensus 252 G~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~ 283 (483)
..+. ...+|++|+....-..+.
T Consensus 381 ~~dg----------~~~l~~~~~~g~~~~~l~ 402 (741)
T 1yr2_A 381 IHDA----------KSQVLAFDLDGKPAGAVS 402 (741)
T ss_dssp EETT----------EEEEEEEETTSCEEEECB
T ss_pred EECC----------EEEEEEEeCCCCceeecc
Confidence 4332 356888987655444443
No 99
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=94.70 E-value=1.2 Score=47.31 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=42.5
Q ss_pred EEEECCcEEEEEcccCCCccccceEEEEcCCC---cEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCC
Q 011542 25 AVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNK---LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRL 101 (483)
Q Consensus 25 ~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~ 101 (483)
.+...|++.++++.. ..++++|..++ .-..+... .....+....-+++.++++..
T Consensus 114 ~~~SpDg~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~~----------~~~~~~~~~SPDG~~la~~~~------ 171 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG------GELYLYDLKQEGKAAVRQLTHG----------EGFATDAKLSPKGGFVSFIRG------ 171 (741)
T ss_dssp CEECTTSSEEEEEET------TEEEEEESSSCSTTSCCBCCCS----------SSCEEEEEECTTSSEEEEEET------
T ss_pred eEECCCCCEEEEEeC------CcEEEEECCCCCcceEEEcccC----------CcccccccCCCCCCEEEEEeC------
Confidence 344466666666653 67999999887 54443211 111222222235555555431
Q ss_pred ccEEEEECCCCeEEEeec
Q 011542 102 GDFWVLDTDIWQWSELTS 119 (483)
Q Consensus 102 ~~~~~yd~~t~~W~~l~~ 119 (483)
+.++++|+.+++..++..
T Consensus 172 ~~i~~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 172 RNLWVIDLASGRQMQLTA 189 (741)
T ss_dssp TEEEEEETTTTEEEECCC
T ss_pred CcEEEEecCCCCEEEecc
Confidence 269999999988777654
No 100
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=94.68 E-value=1.7 Score=41.11 Aligned_cols=124 Identities=12% Similarity=0.048 Sum_probs=62.9
Q ss_pred EEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECC-EEEEEccccCCCCCcc
Q 011542 25 AVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDC-HMFIFGGRFGSRRLGD 103 (483)
Q Consensus 25 ~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~-~iyv~GG~~~~~~~~~ 103 (483)
++...++++|+.+... ....+++||+.++++..+..... ......+.++.-++ .||+.+..+ ..
T Consensus 45 ~a~spdg~l~~~~~~~---~~~~v~~~~~~~g~~~~~~~~~~-------~~~~p~~~a~spdg~~l~~~~~~~-----~~ 109 (347)
T 3hfq_A 45 LALSAKDCLYSVDKED---DEGGIAAWQIDGQTAHKLNTVVA-------PGTPPAYVAVDEARQLVYSANYHK-----GT 109 (347)
T ss_dssp EEECTTCEEEEEEEET---TEEEEEEEEEETTEEEEEEEEEE-------ESCCCSEEEEETTTTEEEEEETTT-----TE
T ss_pred EEEccCCeEEEEEecC---CCceEEEEEecCCcEEEeeeeec-------CCCCCEEEEECCCCCEEEEEeCCC-----CE
Confidence 3444567766665321 12468999998888877654211 11112233333344 566654211 34
Q ss_pred EEEEECC-CCeEEEeec---CCCCCCCC----cccEEEEECCcEEEEEecCCCCcCCccEEEEECC-CCceEEe
Q 011542 104 FWVLDTD-IWQWSELTS---FGDLPSPR----DFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI-SLEWMQL 168 (483)
Q Consensus 104 ~~~yd~~-t~~W~~l~~---~~~~p~~r----~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-t~~W~~i 168 (483)
+.+||+. ++....+.. .+..|.+| ..++++.-.++++|+.+.. .+.+.+||+. +++...+
T Consensus 110 v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~-----~~~v~~~~~~~~g~~~~~ 178 (347)
T 3hfq_A 110 AEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG-----SDKVYVYNVSDAGQLSEQ 178 (347)
T ss_dssp EEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT-----TTEEEEEEECTTSCEEEE
T ss_pred EEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC-----CCEEEEEEECCCCcEEEe
Confidence 7777774 334433321 12222211 1233444456677766532 2468888887 5666544
No 101
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=94.66 E-value=1.9 Score=42.36 Aligned_cols=183 Identities=13% Similarity=0.093 Sum_probs=88.0
Q ss_pred CcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEEC
Q 011542 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDT 109 (483)
Q Consensus 30 ~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 109 (483)
++.+++.|+.+ ..+.+||..+++-...-. .. ...-.++...+..++.|+.++ .+.++|.
T Consensus 182 ~~~~l~sg~~d-----g~i~vwd~~~~~~~~~~~---------~h--~~~v~~l~~~~~~l~s~s~dg-----~i~vwd~ 240 (435)
T 1p22_A 182 DERVIITGSSD-----STVRVWDVNTGEMLNTLI---------HH--CEAVLHLRFNNGMMVTCSKDR-----SIAVWDM 240 (435)
T ss_dssp CSSEEEEEETT-----SCEEEEESSSCCEEEEEC---------CC--CSCEEEEECCTTEEEEEETTS-----CEEEEEC
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCcEEEEEc---------CC--CCcEEEEEEcCCEEEEeeCCC-----cEEEEeC
Confidence 34566666654 358889988876433211 01 111223334555666676543 4788888
Q ss_pred CCCeEEEe-ecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEeCC
Q 011542 110 DIWQWSEL-TSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMVEK 188 (483)
Q Consensus 110 ~t~~W~~l-~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~~~ 188 (483)
.+..-... .. .........++...+ ..++.|+.+ ..+.+||+.+.+-...- ........++..++
T Consensus 241 ~~~~~~~~~~~---~~~~~~~v~~~~~~~-~~l~s~~~d-----g~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~ 306 (435)
T 1p22_A 241 ASPTDITLRRV---LVGHRAAVNVVDFDD-KYIVSASGD-----RTIKVWNTSTCEFVRTL-----NGHKRGIACLQYRD 306 (435)
T ss_dssp SSSSCCEEEEE---ECCCSSCEEEEEEET-TEEEEEETT-----SEEEEEETTTCCEEEEE-----ECCSSCEEEEEEET
T ss_pred CCCCCceeeeE---ecCCCCcEEEEEeCC-CEEEEEeCC-----CeEEEEECCcCcEEEEE-----cCCCCcEEEEEeCC
Confidence 76542211 10 111111122233333 566666653 35788998877544322 11111122333355
Q ss_pred EEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCc
Q 011542 189 RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYND 268 (483)
Q Consensus 189 ~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~ 268 (483)
.+++.|+.. ..+..||+.+..-...- . .... ...++..++..++.|+.+ ..
T Consensus 307 ~~l~~g~~d------------g~i~iwd~~~~~~~~~~-~-~h~~---~v~~~~~~~~~l~sg~~d------------g~ 357 (435)
T 1p22_A 307 RLVVSGSSD------------NTIRLWDIECGACLRVL-E-GHEE---LVRCIRFDNKRIVSGAYD------------GK 357 (435)
T ss_dssp TEEEEEETT------------SCEEEEETTTCCEEEEE-C-CCSS---CEEEEECCSSEEEEEETT------------SC
T ss_pred CEEEEEeCC------------CeEEEEECCCCCEEEEE-e-CCcC---cEEEEEecCCEEEEEeCC------------Cc
Confidence 666666643 33445677665432221 0 1111 112223366666767643 34
Q ss_pred EEEEEcCC
Q 011542 269 TIILDRLS 276 (483)
Q Consensus 269 v~~yd~~~ 276 (483)
+.+||+.+
T Consensus 358 i~vwd~~~ 365 (435)
T 1p22_A 358 IKVWDLVA 365 (435)
T ss_dssp EEEEEHHH
T ss_pred EEEEECCC
Confidence 77888653
No 102
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=94.56 E-value=2.5 Score=39.95 Aligned_cols=201 Identities=11% Similarity=0.062 Sum_probs=96.8
Q ss_pred cEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-C--CEEEEEccccCCCCCccEEEE
Q 011542 31 SKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-D--CHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 31 ~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~--~~iyv~GG~~~~~~~~~~~~y 107 (483)
+.+++.|+.+ ..+.+||..+++|..+..... ....-.+++.. + +.+++.|+.++ .+.+|
T Consensus 69 ~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~l~~~~~d~-----~i~v~ 130 (379)
T 3jrp_A 69 GTILASCSYD-----GKVLIWKEENGRWSQIAVHAV--------HSASVNSVQWAPHEYGPLLLVASSDG-----KVSVV 130 (379)
T ss_dssp CSEEEEEETT-----SCEEEEEEETTEEEEEEEECC--------CSSCEEEEEECCGGGCSEEEEEETTS-----EEEEE
T ss_pred CCEEEEeccC-----CEEEEEEcCCCceeEeeeecC--------CCcceEEEEeCCCCCCCEEEEecCCC-----cEEEE
Confidence 4577777654 358889999998877664421 11112222222 3 56777776543 47788
Q ss_pred ECCCCeE-EEeecCCCCCCCCcccEEEEEC-------------CcEEEEEecCCCCcCCccEEEEECCCCc--eEEeccC
Q 011542 108 DTDIWQW-SELTSFGDLPSPRDFAAASAIG-------------NRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVT 171 (483)
Q Consensus 108 d~~t~~W-~~l~~~~~~p~~r~~~~~~~~~-------------~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~i~~~ 171 (483)
|..+..- ..... ......-.+++... ++.+++.|+.++ .+.+||+.+.. |..+.
T Consensus 131 d~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~-- 200 (379)
T 3jrp_A 131 EFKENGTTSPIII---DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLES-- 200 (379)
T ss_dssp ECCTTSCCCEEEE---ECCTTCEEEEEECCCC----------CTTCEEEEEETTS-----CEEEEEEETTTTEEEEEE--
T ss_pred ecCCCCceeeEEe---cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC-----eEEEEEecCCCcceeeEE--
Confidence 8876521 11110 00111111222222 457788887654 47777775543 44433
Q ss_pred CCCCCCCc-CceEEEe-C---CEEEEEccCCCCCCcccceecccccccccCCCC--CeEEeccCCCCCCCCeeeEEEE-e
Q 011542 172 GSVPPPRC-GHTATMV-E---KRLLIYGGRGGGGPIMGDLWALKGLIEEENETP--GWTQLKLPGQAPSSRCGHTITS-G 243 (483)
Q Consensus 172 ~~~p~~r~-~~~~~~~-~---~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~--~W~~~~~~g~~p~~r~~~~~~~-~ 243 (483)
....... -.+++.. + +.+++.|+..+ .+..||..+. .+...... .......-.+++. .
T Consensus 201 -~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg------------~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~ 266 (379)
T 3jrp_A 201 -TLEGHSDWVRDVAWSPTVLLRSYLASVSQDR------------TCIIWTQDNEQGPWKKTLLK-EEKFPDVLWRASWSL 266 (379)
T ss_dssp -EECCCSSCEEEEEECCCCSSSEEEEEEETTS------------CEEEEEESSTTSCCEEEESS-SSCCSSCEEEEEECS
T ss_pred -EEecccCcEeEEEECCCCCCCCeEEEEeCCC------------EEEEEeCCCCCccceeeeec-cccCCCcEEEEEEcC
Confidence 1111111 1223333 3 67777777543 2334455443 22222111 1111111222333 3
Q ss_pred CCEEEEEcCCCCCCCCcccceeeCcEEEEEcC-CCceEEccCC
Q 011542 244 GHYLLLFGGHGTGGWLSRYDIYYNDTIILDRL-SAQWKRLPIG 285 (483)
Q Consensus 244 ~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~-~~~W~~v~~~ 285 (483)
++.+++.|+.+ ..+.+||+. ...|..+...
T Consensus 267 ~g~~l~~~~~d------------g~i~iw~~~~~~~~~~~~~~ 297 (379)
T 3jrp_A 267 SGNVLALSGGD------------NKVTLWKENLEGKWEPAGEV 297 (379)
T ss_dssp SSCCEEEEESS------------SSEEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEecCC------------CcEEEEeCCCCCccccccce
Confidence 55566666543 346777765 5678776554
No 103
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=94.50 E-value=4.4 Score=40.58 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=36.8
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCC
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
++++|+|-| +.+|.||..+++..... -..+|. . .++...++++|+|-|. ..|+||..+.
T Consensus 158 ~~~~yfFkG-------~~yw~yd~~~~~~~~~~-w~gi~~--i--DAA~~~~g~~YfFkG~-------~y~rfd~~~~ 216 (460)
T 1qhu_A 158 DEGILFFQG-------NRKWFWDLTTGTKKERS-WPAVGN--C--TSALRWLGRYYCFQGN-------QFLRFNPVSG 216 (460)
T ss_dssp SSEEEEEET-------TEEEEEETTTTEEEEEC-CTTSCC--C--SEEEEETTEEEEEETT-------EEEEECTTTC
T ss_pred CCeEEEEec-------ccEEEEecccceeeccc-CCCCCc--c--chheeeCCceEEEECC-------EEEEEcCccC
Confidence 678898877 35899999888765422 112332 2 2333334699999773 4677776544
No 104
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.50 E-value=5.3 Score=42.63 Aligned_cols=109 Identities=10% Similarity=-0.071 Sum_probs=56.7
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~y 107 (483)
..++..++.|+.+ ..+.+||..+++....-.. ........+..-++..++.|+.++ .+.+|
T Consensus 64 s~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~dg-----~i~vw 124 (814)
T 3mkq_A 64 IARKNWIIVGSDD-----FRIRVFNYNTGEKVVDFEA---------HPDYIRSIAVHPTKPYVLSGSDDL-----TVKLW 124 (814)
T ss_dssp EGGGTEEEEEETT-----SEEEEEETTTCCEEEEEEC---------CSSCEEEEEECSSSSEEEEEETTS-----EEEEE
T ss_pred eCCCCEEEEEeCC-----CeEEEEECCCCcEEEEEec---------CCCCEEEEEEeCCCCEEEEEcCCC-----EEEEE
Confidence 4455666666643 3588899888876443211 111111222222455556665432 47888
Q ss_pred ECCCC-eEEEeecCCCCCCCCcccEEEEEC-CcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 108 DTDIW-QWSELTSFGDLPSPRDFAAASAIG-NRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 108 d~~t~-~W~~l~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
|..++ .....-. . ....-.+++... ++.+++.|+.++ .+.+||+.+.+
T Consensus 125 ~~~~~~~~~~~~~---~-~~~~v~~~~~~p~~~~~l~~~~~dg-----~v~vwd~~~~~ 174 (814)
T 3mkq_A 125 NWENNWALEQTFE---G-HEHFVMCVAFNPKDPSTFASGCLDR-----TVKVWSLGQST 174 (814)
T ss_dssp EGGGTSEEEEEEE---C-CSSCEEEEEEETTEEEEEEEEETTS-----EEEEEETTCSS
T ss_pred ECCCCceEEEEEc---C-CCCcEEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCc
Confidence 98775 3333221 1 111122233333 557888887643 57888886554
No 105
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=94.46 E-value=3.7 Score=39.46 Aligned_cols=68 Identities=12% Similarity=0.026 Sum_probs=38.1
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCce
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEW 165 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 165 (483)
++.+++.|+.++ .+.+||.....-..+.. ....-.+++...++..++.|+.++ .+.+||+.+.+-
T Consensus 119 ~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~ 183 (425)
T 1r5m_A 119 DGNSIVTGVENG-----ELRLWNKTGALLNVLNF-----HRAPIVSVKWNKDGTHIISMDVEN-----VTILWNVISGTV 183 (425)
T ss_dssp TSSEEEEEETTS-----CEEEEETTSCEEEEECC-----CCSCEEEEEECTTSSEEEEEETTC-----CEEEEETTTTEE
T ss_pred CCCEEEEEeCCC-----eEEEEeCCCCeeeeccC-----CCccEEEEEECCCCCEEEEEecCC-----eEEEEECCCCcE
Confidence 556777776543 47788855444444431 111223333334556666776533 478889887765
Q ss_pred EEe
Q 011542 166 MQL 168 (483)
Q Consensus 166 ~~i 168 (483)
...
T Consensus 184 ~~~ 186 (425)
T 1r5m_A 184 MQH 186 (425)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 106
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=94.44 E-value=4.2 Score=40.07 Aligned_cols=105 Identities=16% Similarity=0.098 Sum_probs=55.0
Q ss_pred cEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECC
Q 011542 31 SKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTD 110 (483)
Q Consensus 31 ~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 110 (483)
+.+++.|+.+ ..+.+||..+.+-... .. . ....-.+++...+.+++.|+.++ .+.++|+.
T Consensus 132 ~~~l~sgs~d-----g~i~vwd~~~~~~~~~--~~-------~-h~~~V~~l~~~~~~~l~s~s~dg-----~i~vwd~~ 191 (464)
T 3v7d_B 132 DNYVITGADD-----KMIRVYDSINKKFLLQ--LS-------G-HDGGVWALKYAHGGILVSGSTDR-----TVRVWDIK 191 (464)
T ss_dssp TTEEEEEETT-----SCEEEEETTTTEEEEE--EC-------C-CSSCEEEEEECSTTEEEEEETTS-----CEEEEETT
T ss_pred CCEEEEEcCC-----CcEEEEECCCCcEEEE--Ee-------C-CCcCEEEEEEcCCCEEEEEeCCC-----CEEEEECC
Confidence 3466666654 3588899887753222 10 0 11112233333344666676543 47889998
Q ss_pred CCeEEEeecCCCCCCCCcccEEEEE--CCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 111 IWQWSELTSFGDLPSPRDFAAASAI--GNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 111 t~~W~~l~~~~~~p~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
+++-...-. ....+. .++... .++.+++.|+.++ .+.++|+.+..
T Consensus 192 ~~~~~~~~~--~h~~~v--~~l~~~~~~~~~~l~s~s~d~-----~i~vwd~~~~~ 238 (464)
T 3v7d_B 192 KGCCTHVFE--GHNSTV--RCLDIVEYKNIKYIVTGSRDN-----TLHVWKLPKES 238 (464)
T ss_dssp TTEEEEEEC--CCSSCE--EEEEEEESSSCEEEEEEETTS-----CEEEEECCCCC
T ss_pred CCcEEEEEC--CCCCcc--EEEEEecCCCCCEEEEEcCCC-----cEEEeeCCCCc
Confidence 876433221 111111 222222 4557888887654 46777776654
No 107
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=94.39 E-value=3.1 Score=40.64 Aligned_cols=68 Identities=7% Similarity=-0.083 Sum_probs=37.6
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCce
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEW 165 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 165 (483)
++..++.|+.++ .+.++|+.++.-...-. . ....-.++....++.+++.|+.++ .+.+||+.+.+.
T Consensus 203 ~~~~l~s~s~D~-----~i~~wd~~~~~~~~~~~---~-h~~~v~~~~~~~~g~~l~s~s~D~-----~v~vwd~~~~~~ 268 (410)
T 1vyh_C 203 NGDHIVSASRDK-----TIKMWEVQTGYCVKTFT---G-HREWVRMVRPNQDGTLIASCSNDQ-----TVRVWVVATKEC 268 (410)
T ss_dssp SSSEEEEEETTS-----EEEEEETTTCCEEEEEE---C-CSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCE
T ss_pred CCCEEEEEeCCC-----eEEEEECCCCcEEEEEe---C-CCccEEEEEECCCCCEEEEEcCCC-----eEEEEECCCCce
Confidence 456666676543 47889988775432211 1 111112222334567788887644 477788877655
Q ss_pred EE
Q 011542 166 MQ 167 (483)
Q Consensus 166 ~~ 167 (483)
..
T Consensus 269 ~~ 270 (410)
T 1vyh_C 269 KA 270 (410)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 108
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=94.34 E-value=3.6 Score=38.89 Aligned_cols=67 Identities=12% Similarity=0.019 Sum_probs=37.5
Q ss_pred ECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 85 IDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 85 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
-++. ++.|+.++ .+.++|+.+++-...-. . ....-.+++...++.+++.|+.++ .+.+||+.+.+
T Consensus 153 ~~~~-l~s~s~d~-----~i~~wd~~~~~~~~~~~---~-h~~~v~~~~~~~~~~~l~sg~~d~-----~v~~wd~~~~~ 217 (340)
T 1got_B 153 DDNQ-IVTSSGDT-----TCALWDIETGQQTTTFT---G-HTGDVMSLSLAPDTRLFVSGACDA-----SAKLWDVREGM 217 (340)
T ss_dssp ETTE-EEEEETTS-----CEEEEETTTTEEEEEEC---C-CSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCS
T ss_pred CCCc-EEEEECCC-----cEEEEECCCCcEEEEEc---C-CCCceEEEEECCCCCEEEEEeCCC-----cEEEEECCCCe
Confidence 3555 44454332 47889998876443221 1 111122333345567888887654 47888988765
Q ss_pred eE
Q 011542 165 WM 166 (483)
Q Consensus 165 W~ 166 (483)
-.
T Consensus 218 ~~ 219 (340)
T 1got_B 218 CR 219 (340)
T ss_dssp EE
T ss_pred eE
Confidence 43
No 109
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=94.32 E-value=2.3 Score=41.16 Aligned_cols=113 Identities=12% Similarity=0.044 Sum_probs=59.9
Q ss_pred CcEEEEEcccCCCccccceEEEEcCCCcEE-----eeeecCCCCCCCCCCCCcceeEEEEE-CC-EEEEEccccCCCCCc
Q 011542 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWF-----QPECTGNGSNGQVGPGPRAFHIAVAI-DC-HMFIFGGRFGSRRLG 102 (483)
Q Consensus 30 ~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~-----~~~~~~~~~~~~~~p~~R~~h~~~~~-~~-~iyv~GG~~~~~~~~ 102 (483)
++.+++.|+.+ ..+.+||..++... .+.... ... ..-.+++.. ++ .+++.|+.++
T Consensus 93 ~~~~l~s~s~d-----g~v~vw~~~~~~~~~~~~~~~~~~~-------~h~-~~v~~~~~~p~~~~~l~s~~~dg----- 154 (402)
T 2aq5_A 93 NDNVIASGSED-----CTVMVWEIPDGGLVLPLREPVITLE-------GHT-KRVGIVAWHPTAQNVLLSAGCDN----- 154 (402)
T ss_dssp CTTEEEEEETT-----SEEEEEECCTTCCSSCBCSCSEEEE-------CCS-SCEEEEEECSSBTTEEEEEETTS-----
T ss_pred CCCEEEEEeCC-----CeEEEEEccCCCCccccCCceEEec-------CCC-CeEEEEEECcCCCCEEEEEcCCC-----
Confidence 56677777754 34788888876431 111110 011 111222222 33 5777776543
Q ss_pred cEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEE
Q 011542 103 DFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQ 167 (483)
Q Consensus 103 ~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~ 167 (483)
.+.++|..+++....-.. ......-.+++...++.+++.|+.+ ..+.+||+.+.+-..
T Consensus 155 ~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~ 212 (402)
T 2aq5_A 155 VILVWDVGTGAAVLTLGP--DVHPDTIYSVDWSRDGALICTSCRD-----KRVRVIEPRKGTVVA 212 (402)
T ss_dssp CEEEEETTTTEEEEEECT--TTCCSCEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEEEE
T ss_pred EEEEEECCCCCccEEEec--CCCCCceEEEEECCCCCEEEEEecC-----CcEEEEeCCCCceee
Confidence 488999988865433200 0011122233333456677777754 358899998876443
No 110
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.31 E-value=0.57 Score=45.14 Aligned_cols=110 Identities=10% Similarity=-0.026 Sum_probs=57.8
Q ss_pred cceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCE-EEEEccccC-CCCCccEEEEECCCCeEEEeecCCC
Q 011542 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCH-MFIFGGRFG-SRRLGDFWVLDTDIWQWSELTSFGD 122 (483)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~-iyv~GG~~~-~~~~~~~~~yd~~t~~W~~l~~~~~ 122 (483)
..++++|+.+++...+... .....+....- ++. |++... .. ......++.+|+.+..+..+.. .
T Consensus 168 ~~l~~~d~~~g~~~~~~~~----------~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~--~ 234 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQD----------TAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE--H 234 (396)
T ss_dssp EEEEEEETTTCCEEEEEEE----------SSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC--C
T ss_pred ceEEEEECCCCcEEeeccC----------CcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec--c
Confidence 4689999999887776522 11222333332 243 444432 11 1122579999998887776652 1
Q ss_pred CCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEec
Q 011542 123 LPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLP 169 (483)
Q Consensus 123 ~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~ 169 (483)
.+ .......+...+++.+++...........++++|+.+++...+.
T Consensus 235 ~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 280 (396)
T 3c5m_A 235 AE-GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM 280 (396)
T ss_dssp CT-TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE
T ss_pred CC-CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee
Confidence 11 11111222233444333333322222244999999998887765
No 111
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=94.24 E-value=3.1 Score=38.73 Aligned_cols=104 Identities=9% Similarity=-0.046 Sum_probs=50.3
Q ss_pred cEEEEEcccCCCccccceEEEEcC-CCcEEeeeecCCCCCCCCCCCCcceeEEEE-ECC-EEEEEccccCCCCCccEEEE
Q 011542 31 SKVVVFGGLVDKRFLSDVVVYDID-NKLWFQPECTGNGSNGQVGPGPRAFHIAVA-IDC-HMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 31 ~~l~v~GG~~~~~~~~~~~~yd~~-~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~-~iyv~GG~~~~~~~~~~~~y 107 (483)
..+|+.++.+ +.+.+||.. +++...+..... ...-..++. -++ .||+.+. .. ..+.+|
T Consensus 5 ~~l~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~spdg~~l~~~~~-~~----~~v~~~ 65 (343)
T 1ri6_A 5 QTVYIASPES-----QQIHVWNLNHEGALTLTQVVDV---------PGQVQPMVVSPDKRYLYVGVR-PE----FRVLAY 65 (343)
T ss_dssp EEEEEEEGGG-----TEEEEEEECTTSCEEEEEEEEC---------SSCCCCEEECTTSSEEEEEET-TT----TEEEEE
T ss_pred EEEEEeCCCC-----CeEEEEEECCCCcEEEeeeEec---------CCCCceEEECCCCCEEEEeec-CC----CeEEEE
Confidence 3566665432 457888874 455555443311 111112222 234 4655543 21 356777
Q ss_pred ECC--CCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECC
Q 011542 108 DTD--IWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTI 161 (483)
Q Consensus 108 d~~--t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~ 161 (483)
++. ++++..+.. .+....-..++.-.++ .+|+.+.. ...+.+||+.
T Consensus 66 ~~~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~i~~~d~~ 114 (343)
T 1ri6_A 66 RIAPDDGALTFAAE---SALPGSLTHISTDHQGQFVFVGSYN-----AGNVSVTRLE 114 (343)
T ss_dssp EECTTTCCEEEEEE---EECSSCCSEEEECTTSSEEEEEETT-----TTEEEEEEEE
T ss_pred EecCCCCceeeccc---cccCCCCcEEEEcCCCCEEEEEecC-----CCeEEEEECC
Confidence 765 778776643 2221122334444444 46555432 2347778774
No 112
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=94.20 E-value=4.3 Score=39.23 Aligned_cols=109 Identities=10% Similarity=0.037 Sum_probs=58.5
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~y 107 (483)
.++.+++.|+.+ ..+.+||+.+.+-...-. .....-.+++.. ++.+++.|+.++ .+.+|
T Consensus 107 ~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~l~s~s~d~-----~i~iw 166 (420)
T 3vl1_A 107 LQMRRFILGTTE-----GDIKVLDSNFNLQREIDQ----------AHVSEITKLKFFPSGEALISSSQDM-----QLKIW 166 (420)
T ss_dssp SSSCEEEEEETT-----SCEEEECTTSCEEEEETT----------SSSSCEEEEEECTTSSEEEEEETTS-----EEEEE
T ss_pred cCCCEEEEEECC-----CCEEEEeCCCcceeeecc----------cccCccEEEEECCCCCEEEEEeCCC-----eEEEE
Confidence 456777777754 357888887665433210 111122233332 556666776543 48889
Q ss_pred ECCCCeEE-EeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEE
Q 011542 108 DTDIWQWS-ELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQ 167 (483)
Q Consensus 108 d~~t~~W~-~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~ 167 (483)
|+.+.+-. .+.. ....-.+++...++..++.|+.++ .+.+||+.+.+-..
T Consensus 167 d~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~ 217 (420)
T 3vl1_A 167 SVKDGSNPRTLIG-----HRATVTDIAIIDRGRNVLSASLDG-----TIRLWECGTGTTIH 217 (420)
T ss_dssp ETTTCCCCEEEEC-----CSSCEEEEEEETTTTEEEEEETTS-----CEEEEETTTTEEEE
T ss_pred eCCCCcCceEEcC-----CCCcEEEEEEcCCCCEEEEEcCCC-----cEEEeECCCCceeE
Confidence 98765421 1210 111122334444556777777644 47888888765433
No 113
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=94.09 E-value=3.2 Score=39.69 Aligned_cols=113 Identities=11% Similarity=0.089 Sum_probs=55.3
Q ss_pred EEEEEcccCCCccccceEEEEcCCCc------EEeeeecCCCCCCCCCC--CCcceeEEEE----ECCEE-EEEccccCC
Q 011542 32 KVVVFGGLVDKRFLSDVVVYDIDNKL------WFQPECTGNGSNGQVGP--GPRAFHIAVA----IDCHM-FIFGGRFGS 98 (483)
Q Consensus 32 ~l~v~GG~~~~~~~~~~~~yd~~~~~------W~~~~~~~~~~~~~~~p--~~R~~h~~~~----~~~~i-yv~GG~~~~ 98 (483)
.+++.|+.+ ..+.+||..+.. +..+.... .. .......... -++.. ++.|+.++
T Consensus 82 ~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg- 148 (397)
T 1sq9_A 82 CLVATTSFS-----GDLLFYRITREDETKKVIFEKLDLLD-------SDMKKHSFWALKWGASNDRLLSHRLVATDVKG- 148 (397)
T ss_dssp EEEEEEETT-----SCEEEEEEEECTTTCCEEEEEECCSC-------TTGGGSCEEEEEEECCC----CEEEEEEETTS-
T ss_pred cEEEEEcCC-----CCEEEEEccCCcccccccceeecccc-------cccCCCcEEEEEEeeccCCCCceEEEEEeCCC-
Confidence 777777754 347888887766 66654210 00 1112222222 24555 77776543
Q ss_pred CCCccEEEEECCC------Ce---EE---Eeec--CCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 99 RRLGDFWVLDTDI------WQ---WS---ELTS--FGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 99 ~~~~~~~~yd~~t------~~---W~---~l~~--~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
.+.+||..+ .. |. .+.. .........-.+++...++ +++.|+.+ ..+.+||+.+.+
T Consensus 149 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-----g~i~i~d~~~~~ 218 (397)
T 1sq9_A 149 ----TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN-----GTVQISELSTLR 218 (397)
T ss_dssp ----CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT-----SEEEEEETTTTE
T ss_pred ----cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC-----CcEEEEECCCCc
Confidence 366777655 21 11 1110 0000112222344444566 77777653 358889998776
Q ss_pred eEE
Q 011542 165 WMQ 167 (483)
Q Consensus 165 W~~ 167 (483)
-..
T Consensus 219 ~~~ 221 (397)
T 1sq9_A 219 PLY 221 (397)
T ss_dssp EEE
T ss_pred eeE
Confidence 443
No 114
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=94.08 E-value=2.9 Score=38.68 Aligned_cols=110 Identities=8% Similarity=0.028 Sum_probs=56.1
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE---CCEEEEEccccCCCCCccE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI---DCHMFIFGGRFGSRRLGDF 104 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~---~~~iyv~GG~~~~~~~~~~ 104 (483)
..+++.++.|+.++ .+.+||........+.... ... ..-.+++.. ++.+++.|+.++ .+
T Consensus 18 s~~g~~las~s~D~-----~v~iw~~~~~~~~~~~~l~-------gH~-~~V~~v~~s~~~~g~~l~s~s~D~-----~v 79 (297)
T 2pm7_B 18 DYYGKRMATCSSDK-----TIKIFEVEGETHKLIDTLT-------GHE-GPVWRVDWAHPKFGTILASCSYDG-----KV 79 (297)
T ss_dssp CTTSSEEEEEETTS-----CEEEEEBCSSCBCCCEEEC-------CCS-SCEEEEEECCGGGCSEEEEEETTT-----EE
T ss_pred CCCCCEEEEEeCCC-----EEEEEecCCCCcEEEEEEc-------ccc-CCeEEEEecCCCcCCEEEEEcCCC-----EE
Confidence 35677888887653 4778888755433332221 111 111222222 256777777553 47
Q ss_pred EEEECCCCeEEEeecCCCCCCCCcccEEEEE-CC--cEEEEEecCCCCcCCccEEEEECCCC
Q 011542 105 WVLDTDIWQWSELTSFGDLPSPRDFAAASAI-GN--RKIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 105 ~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~-~~--~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
.++|+.++.|..+.. .......-.++.+ .+ +.+++.|+.++ .+.+||+.+.
T Consensus 80 ~iWd~~~~~~~~~~~---~~~h~~~v~~v~~~p~~~g~~l~s~s~d~-----~v~~wd~~~~ 133 (297)
T 2pm7_B 80 MIWKEENGRWSQIAV---HAVHSASVNSVQWAPHEYGPMLLVASSDG-----KVSVVEFKEN 133 (297)
T ss_dssp EEEEBSSSCBCCCEE---ECCCSSCEEEEEECCGGGCSEEEEEETTS-----EEEEEEBCSS
T ss_pred EEEEcCCCceEEEEE---eecCCCceeEEEeCcCCCCcEEEEEECCC-----cEEEEEecCC
Confidence 788988877654432 1111111122223 22 45677776543 4667777654
No 115
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=94.07 E-value=1.5 Score=45.98 Aligned_cols=237 Identities=14% Similarity=-0.010 Sum_probs=113.8
Q ss_pred cceEEEEcC--C-CcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccC-----CCCCccEEEEECCC------
Q 011542 46 SDVVVYDID--N-KLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFG-----SRRLGDFWVLDTDI------ 111 (483)
Q Consensus 46 ~~~~~yd~~--~-~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~-----~~~~~~~~~yd~~t------ 111 (483)
..+|.++.. . ..-..+..... .....+....+..-+++.+++..... .....+++++|+.+
T Consensus 102 ~~l~~~~~~~~g~~~~~~l~~~~~-----~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRPLTPVSA-----VGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp CCEEEECTTSTTCCCCEECSCCCC-----STTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred CeEEEEcCCCCCCCCCEeccCCcc-----CCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 568888887 3 55555542100 00112223333333555444444331 12235799999988
Q ss_pred CeEEEee-cCCCCCCCCcccEEEEECCcEEEEEecCCCCc---CCccEEEEECC-CC---ceEEeccCCCCCCCCcCceE
Q 011542 112 WQWSELT-SFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK---WLSDVYVLDTI-SL---EWMQLPVTGSVPPPRCGHTA 183 (483)
Q Consensus 112 ~~W~~l~-~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~---~~~~v~~yd~~-t~---~W~~i~~~~~~p~~r~~~~~ 183 (483)
+.-..+. . ........+.-.|++.+++...+... ....++++|+. ++ +...+.. .. .......
T Consensus 177 ~~~~~l~~~-----~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~---~~-~~~~~~~ 247 (662)
T 3azo_A 177 SAVRELSDD-----AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG---GP-EEAIAQA 247 (662)
T ss_dssp GGSEESSCS-----CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE---ET-TBCEEEE
T ss_pred CceeEEEec-----CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC---CC-CceEcce
Confidence 6655554 2 11122222333455544444433221 23579999998 57 4444431 10 1111223
Q ss_pred EEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCC-CC--CCCCe-eeEEEE-eCCEEEEEcCCCCCC
Q 011542 184 TMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPG-QA--PSSRC-GHTITS-GGHYLLLFGGHGTGG 257 (483)
Q Consensus 184 ~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g-~~--p~~r~-~~~~~~-~~~~i~v~GG~~~~~ 257 (483)
... ++++|+.+...+. ..++.+|+++.++..+.... .. |.-.. ..+++. -++++++.+.. .
T Consensus 248 ~~spdg~l~~~~~~~~~----------~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~-- 314 (662)
T 3azo_A 248 EWAPDGSLIVATDRTGW----------WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G-- 314 (662)
T ss_dssp EECTTSCEEEEECTTSS----------CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S--
T ss_pred EECCCCeEEEEECCCCC----------eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C--
Confidence 333 5677766654321 23555688788888765211 00 11000 112333 35666666553 2
Q ss_pred CCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEE-EEECCEEEEEccCCCCCccCcEEEEcC
Q 011542 258 WLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSM-TCLGSLYLLFGGFDGKSTFGDIWWLVP 324 (483)
Q Consensus 258 ~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~-~~~~~~i~v~GG~~~~~~~~d~w~l~~ 324 (483)
...+|.+|+.+.....+.... ....++ ..-++.+++..+... ...++|.++.
T Consensus 315 --------~~~l~~~d~~~~~~~~l~~~~-----~~~~~~~s~~~~~~~~~~~~~~--~~~~i~~~d~ 367 (662)
T 3azo_A 315 --------AAVLGILDPESGELVDAAGPW-----TEWAATLTVSGTRAVGVAASPR--TAYEVVELDT 367 (662)
T ss_dssp --------SCEEEEEETTTTEEEECCSSC-----CEEEEEEEEETTEEEEEEEETT--EEEEEEEEET
T ss_pred --------ccEEEEEECCCCcEEEecCCC-----CeEEEEEecCCCEEEEEEcCCC--CCCEEEEEEC
Confidence 256899999888777765421 112222 334566665544321 2334555543
No 116
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=94.05 E-value=3.2 Score=42.45 Aligned_cols=232 Identities=10% Similarity=0.012 Sum_probs=102.0
Q ss_pred CcEEEEEcccCCCccccceEEEEcCCC------cEEeeeecCCCCCCCCCCCCcceeEEEE-ECCEEEEEccccCCCCCc
Q 011542 30 KSKVVVFGGLVDKRFLSDVVVYDIDNK------LWFQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSRRLG 102 (483)
Q Consensus 30 ~~~l~v~GG~~~~~~~~~~~~yd~~~~------~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~~iyv~GG~~~~~~~~ 102 (483)
++.+++.|+.++ .+.+||..+. ....+.... ..... -.+++. -+++.++.++.+.. ...
T Consensus 77 ~~~~l~s~~~dg-----~v~vw~~~~~~~~~~~~~~~~~~~~-------~~~~~-v~~~~~s~~~~~l~~~~~~~~-~~~ 142 (615)
T 1pgu_A 77 GSQYLCSGDESG-----KVIVWGWTFDKESNSVEVNVKSEFQ-------VLAGP-ISDISWDFEGRRLCVVGEGRD-NFG 142 (615)
T ss_dssp TCCEEEEEETTS-----EEEEEEEEEEGGGTEEEEEEEEEEE-------CCSSC-EEEEEECTTSSEEEEEECCSS-CSE
T ss_pred CCCEEEEecCCC-----EEEEEeCCCCcccccccccccchhh-------ccccc-EEEEEEeCCCCEEEEeccCCC-Ccc
Confidence 677777777532 4777777644 333333221 11111 222222 24566666664321 234
Q ss_pred cEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcE-EEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCC-cC
Q 011542 103 DFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRK-IVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPR-CG 180 (483)
Q Consensus 103 ~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r-~~ 180 (483)
.++.+|... .-..+. . ....-.+++...++. +++.|+.+ ..+.+||..+.+-...-. ...... .-
T Consensus 143 ~v~~~d~~~-~~~~~~----~-~~~~v~~~~~~~~~~~~l~~~~~d-----~~v~vwd~~~~~~~~~~~--~~~~~~~~v 209 (615)
T 1pgu_A 143 VFISWDSGN-SLGEVS----G-HSQRINACHLKQSRPMRSMTVGDD-----GSVVFYQGPPFKFSASDR--THHKQGSFV 209 (615)
T ss_dssp EEEETTTCC-EEEECC----S-CSSCEEEEEECSSSSCEEEEEETT-----TEEEEEETTTBEEEEEEC--SSSCTTCCE
T ss_pred EEEEEECCC-cceeee----c-CCccEEEEEECCCCCcEEEEEeCC-----CcEEEEeCCCcceeeeec--ccCCCCceE
Confidence 567777322 111111 1 111122333334443 67777653 357888887665443220 111100 11
Q ss_pred ceEEEe-C-CEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCC
Q 011542 181 HTATMV-E-KRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGW 258 (483)
Q Consensus 181 ~~~~~~-~-~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 258 (483)
.++... + +++++.|+.. ..+..||+.+.+....-..........-.++...++..++.|+.+
T Consensus 210 ~~~~~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d---- 273 (615)
T 1pgu_A 210 RDVEFSPDSGEFVITVGSD------------RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD---- 273 (615)
T ss_dssp EEEEECSTTCCEEEEEETT------------CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT----
T ss_pred EEEEECCCCCCEEEEEeCC------------CeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCC----
Confidence 223333 4 5667767653 234456766655433220000011111122222256666666543
Q ss_pred CcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEccCCC
Q 011542 259 LSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDG 312 (483)
Q Consensus 259 ~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~ 312 (483)
..+.+||+.+.+-...-.....+......+++..++..++.|+.++
T Consensus 274 --------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 319 (615)
T 1pgu_A 274 --------ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 319 (615)
T ss_dssp --------SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS
T ss_pred --------CcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCC
Confidence 3478889876654332221101111122223333566666776654
No 117
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=93.83 E-value=4.5 Score=38.11 Aligned_cols=249 Identities=12% Similarity=-0.005 Sum_probs=123.5
Q ss_pred eEEEECCcEEEEEcccCCC-------------------ccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE
Q 011542 24 SAVNIGKSKVVVFGGLVDK-------------------RFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA 84 (483)
Q Consensus 24 ~~~~~~~~~l~v~GG~~~~-------------------~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~ 84 (483)
.+++-.++.+|+.+..+.. ...+.+.++|+.+++-...... .... .-+.+++
T Consensus 28 ~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--------~~~~-~p~gia~ 98 (329)
T 3fvz_A 28 GVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK--------NLFY-LPHGLSI 98 (329)
T ss_dssp EEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT--------TTCS-SEEEEEE
T ss_pred EEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC--------CccC-CceEEEE
Confidence 3444566889987764321 0113689999988876443210 1111 1233444
Q ss_pred E-CCEEEEEccccCCCCCccEEEEECCCC--eEEEeecCC---CCCCCCcccEEEEE-C-CcEEEEEecCCCCcCCccEE
Q 011542 85 I-DCHMFIFGGRFGSRRLGDFWVLDTDIW--QWSELTSFG---DLPSPRDFAAASAI-G-NRKIVMYGGWDGKKWLSDVY 156 (483)
Q Consensus 85 ~-~~~iyv~GG~~~~~~~~~~~~yd~~t~--~W~~l~~~~---~~p~~r~~~~~~~~-~-~~~iyv~GG~~~~~~~~~v~ 156 (483)
. +++||+....+ +.+.+||+... .-..+...+ ...........+++ . ++.|||..++. .+.+.
T Consensus 99 d~~g~l~v~d~~~-----~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~----~~~I~ 169 (329)
T 3fvz_A 99 DTDGNYWVTDVAL-----HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC----NSRIV 169 (329)
T ss_dssp CTTSCEEEEETTT-----TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS----CCEEE
T ss_pred CCCCCEEEEECCC-----CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC----CCeEE
Confidence 3 56788875432 35889998765 222232110 00111112233334 3 67999987521 34588
Q ss_pred EEECCCCceEEeccCCCC----CCCCc-CceEEEe-C-CEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCC
Q 011542 157 VLDTISLEWMQLPVTGSV----PPPRC-GHTATMV-E-KRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPG 229 (483)
Q Consensus 157 ~yd~~t~~W~~i~~~~~~----p~~r~-~~~~~~~-~-~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g 229 (483)
+||.....-..+...+.. +.... -+.+++. + +.|||..... +.+.+||+++.+....-.
T Consensus 170 ~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~------------~~I~~~~~~~G~~~~~~~-- 235 (329)
T 3fvz_A 170 QFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN------------GRIQCFKTDTKEFVREIK-- 235 (329)
T ss_dssp EECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT------------TEEEEEETTTCCEEEEEC--
T ss_pred EEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC------------CEEEEEECCCCcEEEEEe--
Confidence 898654433333221111 11111 2344443 3 7999986432 456677887666544321
Q ss_pred CCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEE-CCEEEEEc
Q 011542 230 QAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFG 308 (483)
Q Consensus 230 ~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~-~~~i~v~G 308 (483)
.......-.+++...+.++...|...-. +.....+.++|+.+.+....-... ......-+++++. ++.|||..
T Consensus 236 ~~~~~~~~~~~~~~pg~~~~~~g~~~v~-----~~~~~~v~~~~~~~g~~~~~~~~~-~~~~~~p~~ia~~~dG~lyvad 309 (329)
T 3fvz_A 236 HASFGRNVFAISYIPGFLFAVNGKPYFG-----DQEPVQGFVMNFSSGEIIDVFKPV-RKHFDMPHDIVASEDGTVYIGD 309 (329)
T ss_dssp CTTTTTCEEEEEEETTEEEEEECCCCTT-----CSCCCCEEEEETTTCCEEEEECCS-SSCCSSEEEEEECTTSEEEEEE
T ss_pred ccccCCCcceeeecCCEEEEeCCCEEec-----cCCCcEEEEEEcCCCeEEEEEcCC-CCccCCeeEEEECCCCCEEEEE
Confidence 1111122223444457777776643211 123467999998877665432110 0111222344433 46888886
Q ss_pred cC
Q 011542 309 GF 310 (483)
Q Consensus 309 G~ 310 (483)
..
T Consensus 310 ~~ 311 (329)
T 3fvz_A 310 AH 311 (329)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 118
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=93.58 E-value=2.5 Score=40.48 Aligned_cols=116 Identities=10% Similarity=-0.031 Sum_probs=64.7
Q ss_pred ECCc-EEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCCCCccE
Q 011542 28 IGKS-KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRRLGDF 104 (483)
Q Consensus 28 ~~~~-~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~~~~~ 104 (483)
..++ .+++.|+.+ ..+.+||..+.+........ .....-.+++.. ++.+++.|+.++ .+
T Consensus 82 ~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~~l~s~~~d~-----~i 143 (383)
T 3ei3_B 82 HPTHPTTVAVGSKG-----GDIILWDYDVQNKTSFIQGM--------GPGDAITGMKFNQFNTNQLFVSSIRG-----AT 143 (383)
T ss_dssp CSSCTTEEEEEEBT-----SCEEEEETTSTTCEEEECCC--------STTCBEEEEEEETTEEEEEEEEETTT-----EE
T ss_pred CCCCCCEEEEEcCC-----CeEEEEeCCCcccceeeecC--------CcCCceeEEEeCCCCCCEEEEEeCCC-----EE
Confidence 3444 677777754 35889999988776553210 111122233333 346666666443 47
Q ss_pred EEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEe
Q 011542 105 WVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQL 168 (483)
Q Consensus 105 ~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i 168 (483)
.++|+.+.....+.... .....-.+++...++.+++.|+.+ ..+.+||+....-..+
T Consensus 144 ~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~ 200 (383)
T 3ei3_B 144 TLRDFSGSVIQVFAKTD--SWDYWYCCVDVSVSRQMLATGDST-----GRLLLLGLDGHEIFKE 200 (383)
T ss_dssp EEEETTSCEEEEEECCC--CSSCCEEEEEEETTTTEEEEEETT-----SEEEEEETTSCEEEEE
T ss_pred EEEECCCCceEEEeccC--CCCCCeEEEEECCCCCEEEEECCC-----CCEEEEECCCCEEEEe
Confidence 88999887776665311 111222334444555677777754 3588889854443333
No 119
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=93.58 E-value=4.4 Score=37.20 Aligned_cols=55 Identities=15% Similarity=-0.013 Sum_probs=28.7
Q ss_pred eCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceE-EccCCCCCCCCCcceEEEEE-CCEEEEEccCCCC
Q 011542 243 GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWK-RLPIGNEPPPARAYHSMTCL-GSLYLLFGGFDGK 313 (483)
Q Consensus 243 ~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~-~v~~~~~~p~~R~~~~~~~~-~~~i~v~GG~~~~ 313 (483)
.++.+++.+|..+ +.+.+||..+.+-. .+.... . .-.+++.. ++.+++.||.++.
T Consensus 251 ~~~~~~~~sg~~d-----------~~i~iwd~~~~~~~~~l~gH~----~-~V~~l~~spdg~~l~S~s~D~~ 307 (318)
T 4ggc_A 251 HYKELISGHGFAQ-----------NQLVIWKYPTMAKVAELKGHT----S-RVLSLTMSPDGATVASAAADET 307 (318)
T ss_dssp TTTEEEEEECTTT-----------CCEEEEETTTCCEEEEECCCS----S-CEEEEEECTTSSCEEEEETTTE
T ss_pred cccceEEEEEcCC-----------CEEEEEECCCCcEEEEEcCCC----C-CEEEEEEcCCCCEEEEEecCCe
Confidence 4556666666443 35888998765422 222211 1 11222222 5677788887653
No 120
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=93.47 E-value=4.9 Score=37.48 Aligned_cols=129 Identities=8% Similarity=-0.030 Sum_probs=72.5
Q ss_pred eeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCC
Q 011542 23 HSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRL 101 (483)
Q Consensus 23 h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~ 101 (483)
...+...++.+|+.+..+ ..+++||+.+++...+... + ...-++++.. ++++|+...... ...
T Consensus 48 ~~~~~~~~g~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~---------~-~~~~~~i~~~~dg~l~v~~~~~~-~~~ 111 (333)
T 2dg1_A 48 EGLNFDRQGQLFLLDVFE-----GNIFKINPETKEIKRPFVS---------H-KANPAAIKIHKDGRLFVCYLGDF-KST 111 (333)
T ss_dssp EEEEECTTSCEEEEETTT-----CEEEEECTTTCCEEEEEEC---------S-SSSEEEEEECTTSCEEEEECTTS-SSC
T ss_pred cCcEECCCCCEEEEECCC-----CEEEEEeCCCCcEEEEeeC---------C-CCCcceEEECCCCcEEEEeCCCC-CCC
Confidence 344444667788776532 3689999999888765421 1 1122334443 567887653221 112
Q ss_pred ccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCC-CCcCCccEEEEECCCCceEEec
Q 011542 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWD-GKKWLSDVYVLDTISLEWMQLP 169 (483)
Q Consensus 102 ~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~-~~~~~~~v~~yd~~t~~W~~i~ 169 (483)
..+++||+.+.....+.. .......-..++...++.+|+..... .......++++|+.+.+...+.
T Consensus 112 ~~i~~~d~~~~~~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 178 (333)
T 2dg1_A 112 GGIFAATENGDNLQDIIE--DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII 178 (333)
T ss_dssp CEEEEECTTSCSCEEEEC--SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE
T ss_pred ceEEEEeCCCCEEEEEEc--cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee
Confidence 468999998877653321 11122222334444566888754321 1122457999999887776653
No 121
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=93.36 E-value=6.6 Score=39.99 Aligned_cols=113 Identities=11% Similarity=-0.005 Sum_probs=56.2
Q ss_pred eeEEEECCcEEEEEcccCCCccccceEEEEcCCC----cE-EeeeecCCCCCCCCCCCCc-ceeEEEEE--CCEEEEEcc
Q 011542 23 HSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNK----LW-FQPECTGNGSNGQVGPGPR-AFHIAVAI--DCHMFIFGG 94 (483)
Q Consensus 23 h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~----~W-~~~~~~~~~~~~~~~p~~R-~~h~~~~~--~~~iyv~GG 94 (483)
.+++...++..+++|+ + +.+.+||+.+. +- ..+. ..... ....+..- ++++++.|+
T Consensus 22 ~~~~~spdg~~l~~~~--~----~~v~v~~~~~~~~~~~~~~~~~----------~h~~~~v~~~~~sp~~~~~~l~s~~ 85 (615)
T 1pgu_A 22 THLSYDPTTNAIAYPC--G----KSAFVRCLDDGDSKVPPVVQFT----------GHGSSVVTTVKFSPIKGSQYLCSGD 85 (615)
T ss_dssp CCCEEETTTTEEEEEE--T----TEEEEEECCSSCCSSCSEEEEC----------TTTTSCEEEEEECSSTTCCEEEEEE
T ss_pred eEEEECCCCCEEEEec--C----CeEEEEECCCCCCccccceEEe----------cCCCceEEEEEECcCCCCCEEEEec
Confidence 3444456677777776 1 36889998866 32 2221 11112 22222233 557777776
Q ss_pred ccCCCCCccEEEEECCCC------eEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEE
Q 011542 95 RFGSRRLGDFWVLDTDIW------QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLD 159 (483)
Q Consensus 95 ~~~~~~~~~~~~yd~~t~------~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd 159 (483)
.++ .+.++|..+. ....+..... ....-.+++...+++.++.+|.+.. ....++.+|
T Consensus 86 ~dg-----~v~vw~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~-~~~~v~~~d 148 (615)
T 1pgu_A 86 ESG-----KVIVWGWTFDKESNSVEVNVKSEFQV--LAGPISDISWDFEGRRLCVVGEGRD-NFGVFISWD 148 (615)
T ss_dssp TTS-----EEEEEEEEEEGGGTEEEEEEEEEEEC--CSSCEEEEEECTTSSEEEEEECCSS-CSEEEEETT
T ss_pred CCC-----EEEEEeCCCCcccccccccccchhhc--ccccEEEEEEeCCCCEEEEeccCCC-CccEEEEEE
Confidence 543 4777777544 3333322001 1122233334455566677765432 234566676
No 122
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=93.23 E-value=8.7 Score=39.63 Aligned_cols=127 Identities=12% Similarity=0.050 Sum_probs=66.7
Q ss_pred ECCcEEEEEcccCCCccccceEEEEc-CCC--cEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDI-DNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDF 104 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~-~~~--~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~ 104 (483)
+.+++||+.... ...++++|. .++ .|+.-....... ...+.+.....+.++.+++||+... -..+
T Consensus 60 v~~g~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~v~~~------dg~l 127 (571)
T 2ad6_A 60 VIGDMMYVHSAF-----PNNTYALNLNDPGKIVWQHKPKQDAST-KAVMCCDVVDRGLAYGAGQIVKKQA------NGHL 127 (571)
T ss_dssp EETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGG-GGGCTTCSCCCCCEEETTEEEEECT------TSEE
T ss_pred EECCEEEEEeCC-----CCEEEEEeCCCCccEEEEEcCCCCccc-cccccccccccccEEECCEEEEEeC------CCEE
Confidence 335789987753 246999999 766 587643210000 0000000112234567889988643 1358
Q ss_pred EEEECCCC--eEEEeecCCCCCCC-CcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc--eEEec
Q 011542 105 WVLDTDIW--QWSELTSFGDLPSP-RDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLP 169 (483)
Q Consensus 105 ~~yd~~t~--~W~~l~~~~~~p~~-r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~i~ 169 (483)
+++|..++ .|+.-.. ..+.. ....+-++. ++.+|+-.+.........++.||..|++ |+.-.
T Consensus 128 ~alD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 128 LALDAKTGKINWEVEVC--DPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp EEEETTTCCEEEEEECC--CGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEECCCCCEEEEecCC--CCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 99999887 4875421 11111 111122234 4578775432111224568999998765 87643
No 123
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=93.20 E-value=5.1 Score=37.63 Aligned_cols=71 Identities=13% Similarity=0.209 Sum_probs=38.2
Q ss_pred CCEEEEEccccCCCCCccEEEEECCC--CeEEEeecCCCCCCCCc-ccEEEEECCcEEEEEecCCCCcCCccEEEEECCC
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDI--WQWSELTSFGDLPSPRD-FAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTIS 162 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t--~~W~~l~~~~~~p~~r~-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t 162 (483)
+++.++.|+.++ .+.++|... ..+..+.. +..... -.+++...++.+++.|+.++ .+.++|..+
T Consensus 118 ~g~~las~s~D~-----~v~iwd~~~~~~~~~~~~~---~~~h~~~v~~v~~~p~~~~l~s~s~D~-----~i~iW~~~~ 184 (330)
T 2hes_X 118 DGYYLATCSRDK-----SVWIWETDESGEEYECISV---LQEHSQDVKHVIWHPSEALLASSSYDD-----TVRIWKDYD 184 (330)
T ss_dssp TSCEEEEEETTS-----CEEEEECCTTCCCCEEEEE---ECCCSSCEEEEEECSSSSEEEEEETTS-----CEEEEEEET
T ss_pred CCCEEEEEeCCC-----EEEEEeccCCCCCeEEEEE---eccCCCceEEEEECCCCCEEEEEcCCC-----eEEEEECCC
Confidence 556677776543 377788742 23443332 111111 12222234556778887654 367778777
Q ss_pred CceEEec
Q 011542 163 LEWMQLP 169 (483)
Q Consensus 163 ~~W~~i~ 169 (483)
..|..+.
T Consensus 185 ~~~~~~~ 191 (330)
T 2hes_X 185 DDWECVA 191 (330)
T ss_dssp TEEEEEE
T ss_pred CCeeEEE
Confidence 7776654
No 124
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=93.13 E-value=5 Score=41.47 Aligned_cols=163 Identities=14% Similarity=0.159 Sum_probs=83.1
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCC--------CCCCcccEEEEECCcEEEEEecCCCCcCCccEEE
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDL--------PSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYV 157 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~--------p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~ 157 (483)
+..+|+..- . -+.+.++|..+.+=...-+.+.+ |.+|... ++...++..+++-= .....++.
T Consensus 255 Gk~l~v~n~-~----~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~-i~~s~~~~~~vv~~----~~~g~v~~ 324 (567)
T 1qks_A 255 DKYAIAGAY-W----PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA-ILASHYRPEFIVNV----KETGKILL 324 (567)
T ss_dssp TTEEEEEEE-E----TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE-EEECSSSSEEEEEE----TTTTEEEE
T ss_pred CCEEEEEEc-c----CCeEEEEECCCCcEEEEEeccccccccccccCCCceEE-EEEcCCCCEEEEEe----cCCCeEEE
Confidence 346666542 2 23577899877654332222111 2223222 22222222333321 22456888
Q ss_pred EECCCCceEEeccCCCCCCCCcCceEEEe-C-CEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccC-CCCCCC
Q 011542 158 LDTISLEWMQLPVTGSVPPPRCGHTATMV-E-KRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLP-GQAPSS 234 (483)
Q Consensus 158 yd~~t~~W~~i~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~-g~~p~~ 234 (483)
.|..+.+...+. .++..+.-|...+. + .++|+.... -+.+.++|..+.+-...-.. +..|.+
T Consensus 325 vd~~~~~~~~v~---~i~~~~~~~d~~~~pdgr~~~va~~~------------sn~V~ViD~~t~kl~~~i~vgg~~Php 389 (567)
T 1qks_A 325 VDYTDLNNLKTT---EISAERFLHDGGLDGSHRYFITAANA------------RNKLVVIDTKEGKLVAIEDTGGQTPHP 389 (567)
T ss_dssp EETTCSSEEEEE---EEECCSSEEEEEECTTSCEEEEEEGG------------GTEEEEEETTTTEEEEEEECSSSSBCC
T ss_pred EecCCCccceee---eeeccccccCceECCCCCEEEEEeCC------------CCeEEEEECCCCcEEEEEeccCcCCCC
Confidence 888877665554 34455566665554 2 355554432 15566678888765433333 456665
Q ss_pred CeeeEEEEe-CCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCC-----ceEEccC
Q 011542 235 RCGHTITSG-GHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSA-----QWKRLPI 284 (483)
Q Consensus 235 r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~-----~W~~v~~ 284 (483)
..+.....- .+.+|+.+-... +.|.++|..+. .|+.+..
T Consensus 390 g~g~~~~~p~~g~v~~t~~~g~-----------~~Vsvid~~~~~~~~~~~kvv~~ 434 (567)
T 1qks_A 390 GRGANFVHPTFGPVWATSHMGD-----------DSVALIGTDPEGHPDNAWKILDS 434 (567)
T ss_dssp TTCEEEEETTTEEEEEEEBSSS-----------SEEEEEECCTTTCTTTBTSEEEE
T ss_pred ccceeeECCCCCcEEEeCCCCC-----------CeEEEecCCCCCCccccCEEEEE
Confidence 444433222 356777653222 45788887653 2766554
No 125
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=93.09 E-value=5.5 Score=36.92 Aligned_cols=137 Identities=14% Similarity=0.128 Sum_probs=64.1
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLD 108 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd 108 (483)
.++.+++.|+.++ .+..++............ ...........-.+..++.|+.++ .+.++|
T Consensus 96 ~dg~~l~s~~~d~-----~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~s~s~d~-----~~~~~d 156 (340)
T 4aow_A 96 SDGQFALSGSWDG-----TLRLWDLTTGTTTRRFVG---------HTKDVLSVAFSSDNRQIVSGSRDK-----TIKLWN 156 (340)
T ss_dssp TTSSEEEEEETTS-----EEEEEETTTTEEEEEEEC---------CSSCEEEEEECTTSSCEEEEETTS-----CEEEEC
T ss_pred CCCCEEEEEcccc-----cceEEeecccceeeeecC---------CCCceeEEEEeecCccceeecCCC-----eEEEEE
Confidence 4566666666543 366777776655444321 111112222222445566665443 356777
Q ss_pred CCCCeEEEeecCCCCCCCCcccEEEEE---CCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEE
Q 011542 109 TDIWQWSELTSFGDLPSPRDFAAASAI---GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATM 185 (483)
Q Consensus 109 ~~t~~W~~l~~~~~~p~~r~~~~~~~~---~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~ 185 (483)
.....-..... .........+.+ ....+++.|+.++ .+.+||..+.+-...- .... ..-.++++
T Consensus 157 ~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~s~~~d~-----~i~i~d~~~~~~~~~~---~~h~-~~v~~~~~ 223 (340)
T 4aow_A 157 TLGVCKYTVQD----ESHSEWVSCVRFSPNSSNPIIVSCGWDK-----LVKVWNLANCKLKTNH---IGHT-GYLNTVTV 223 (340)
T ss_dssp TTSCEEEEECS----SSCSSCEEEEEECSCSSSCEEEEEETTS-----CEEEEETTTTEEEEEE---CCCS-SCEEEEEE
T ss_pred eCCCceEEEEe----ccccCcccceEEccCCCCcEEEEEcCCC-----EEEEEECCCCceeeEe---cCCC-CcEEEEEE
Confidence 76544333221 111111122222 2235666676543 4778898877654432 1111 11122233
Q ss_pred e-CCEEEEEccCC
Q 011542 186 V-EKRLLIYGGRG 197 (483)
Q Consensus 186 ~-~~~lyv~GG~~ 197 (483)
. ++++++.|+..
T Consensus 224 s~~~~~l~s~s~D 236 (340)
T 4aow_A 224 SPDGSLCASGGKD 236 (340)
T ss_dssp CTTSSEEEEEETT
T ss_pred CCCCCEEEEEeCC
Confidence 3 45677777653
No 126
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=93.03 E-value=5.4 Score=36.69 Aligned_cols=201 Identities=8% Similarity=0.035 Sum_probs=96.0
Q ss_pred eEEEECC-cEEEEEcccCCCccccceEEEEcCCCcEEee-eecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccC---
Q 011542 24 SAVNIGK-SKVVVFGGLVDKRFLSDVVVYDIDNKLWFQP-ECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFG--- 97 (483)
Q Consensus 24 ~~~~~~~-~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~--- 97 (483)
.++...+ +.+|+.... +.+++||+. ++...+ ..... ..+..+ -+.++.. ++++|+......
T Consensus 75 ~i~~~~~~g~l~v~~~~------~~l~~~d~~-g~~~~~~~~~~~-----~~~~~~-~~~i~~d~~g~l~v~~~~~~~~~ 141 (314)
T 1pjx_A 75 GCQCDRDANQLFVADMR------LGLLVVQTD-GTFEEIAKKDSE-----GRRMQG-CNDCAFDYEGNLWITAPAGEVAP 141 (314)
T ss_dssp EEEECSSSSEEEEEETT------TEEEEEETT-SCEEECCSBCTT-----SCBCBC-CCEEEECTTSCEEEEECBCBCTT
T ss_pred eEEEecCCCcEEEEECC------CCEEEEeCC-CCEEEEEeccCC-----CccccC-CcCEEECCCCCEEEEecCccccc
Confidence 3334455 788886642 258899998 776654 32110 111111 2333333 567887653221
Q ss_pred -------CCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEE----CCc-EEEEEecCCCCcCCccEEEEECC-CCc
Q 011542 98 -------SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAI----GNR-KIVMYGGWDGKKWLSDVYVLDTI-SLE 164 (483)
Q Consensus 98 -------~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~----~~~-~iyv~GG~~~~~~~~~v~~yd~~-t~~ 164 (483)
......+++||+. ++...+.. .... ...++.. .++ .+|+.... .+.+++||+. +++
T Consensus 142 ~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~---~~~i~~~~~~d~dg~~l~v~~~~-----~~~i~~~~~~~~g~ 210 (314)
T 1pjx_A 142 ADYTRSMQEKFGSIYCFTTD-GQMIQVDT--AFQF---PNGIAVRHMNDGRPYQLIVAETP-----TKKLWSYDIKGPAK 210 (314)
T ss_dssp SCCCBTTSSSCEEEEEECTT-SCEEEEEE--EESS---EEEEEEEECTTSCEEEEEEEETT-----TTEEEEEEEEETTE
T ss_pred ccccccccCCCCeEEEECCC-CCEEEecc--CCCC---cceEEEecccCCCCCEEEEEECC-----CCeEEEEECCCCCc
Confidence 1112468999987 55554432 1111 1233444 455 56776432 3568888876 444
Q ss_pred eEEeccCCCCCCC--CcCceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCe-EEeccCCCCCCCCeeeEE
Q 011542 165 WMQLPVTGSVPPP--RCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGW-TQLKLPGQAPSSRCGHTI 240 (483)
Q Consensus 165 W~~i~~~~~~p~~--r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W-~~~~~~g~~p~~r~~~~~ 240 (483)
..........+.. ..-..++.. ++++|+..... ..+.+||+++.+. ..+. .|. ..-.++
T Consensus 211 ~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~------------~~i~~~d~~~g~~~~~~~----~~~-~~~~~i 273 (314)
T 1pjx_A 211 IENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS------------SHIEVFGPDGGQPKMRIR----CPF-EKPSNL 273 (314)
T ss_dssp EEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT------------TEEEEECTTCBSCSEEEE----CSS-SCEEEE
T ss_pred cccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC------------CEEEEEcCCCCcEeEEEe----CCC-CCceeE
Confidence 3321100011111 111223333 56888864221 3455668774432 3333 121 222233
Q ss_pred EE-eCC-EEEEEcCCCCCCCCcccceeeCcEEEEEcCCC
Q 011542 241 TS-GGH-YLLLFGGHGTGGWLSRYDIYYNDTIILDRLSA 277 (483)
Q Consensus 241 ~~-~~~-~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 277 (483)
++ .++ .||+..... +.+++|++...
T Consensus 274 ~~~~dg~~l~v~~~~~------------~~l~~~~~~~~ 300 (314)
T 1pjx_A 274 HFKPQTKTIFVTEHEN------------NAVWKFEWQRN 300 (314)
T ss_dssp EECTTSSEEEEEETTT------------TEEEEEECSSC
T ss_pred EECCCCCEEEEEeCCC------------CeEEEEeCCCC
Confidence 33 233 477754321 46889998653
No 127
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=92.94 E-value=7.6 Score=38.14 Aligned_cols=177 Identities=13% Similarity=0.009 Sum_probs=88.3
Q ss_pred ECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 85 IDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 85 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
.++.+++.|+.++ .+.+||..+.+-...-. . ....-.+++...++..++.|+.++ .+.+||+.+.+
T Consensus 278 ~~~~~l~~~~~d~-----~i~vwd~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~l~sg~~dg-----~i~vwd~~~~~ 343 (464)
T 3v7d_B 278 GHGNIVVSGSYDN-----TLIVWDVAQMKCLYILS---G-HTDRIYSTIYDHERKRCISASMDT-----TIRIWDLENGE 343 (464)
T ss_dssp EETTEEEEEETTS-----CEEEEETTTTEEEEEEC---C-CSSCEEEEEEETTTTEEEEEETTS-----CEEEEETTTTE
T ss_pred CCCCEEEEEeCCC-----eEEEEECCCCcEEEEec---C-CCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCc
Confidence 3455666666543 48899998776433221 1 112223344445556777777544 48889998775
Q ss_pred eEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeC
Q 011542 165 WMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGG 244 (483)
Q Consensus 165 W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~ 244 (483)
-...- ......-.++...+..++.|+.. ..+..||+.+..-.... . ........+...+
T Consensus 344 ~~~~~-----~~h~~~v~~~~~~~~~l~s~s~d------------g~v~vwd~~~~~~~~~~---~-~~~~~~~~~~~~~ 402 (464)
T 3v7d_B 344 LMYTL-----QGHTALVGLLRLSDKFLVSAAAD------------GSIRGWDANDYSRKFSY---H-HTNLSAITTFYVS 402 (464)
T ss_dssp EEEEE-----CCCSSCEEEEEECSSEEEEEETT------------SEEEEEETTTCCEEEEE---E-CTTCCCEEEEEEC
T ss_pred EEEEE-----eCCCCcEEEEEEcCCEEEEEeCC------------CcEEEEECCCCceeeee---c-CCCCccEEEEEeC
Confidence 43321 11111223333455666666643 23445666654422221 1 1111222333455
Q ss_pred CEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEccCCC
Q 011542 245 HYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGGFDG 312 (483)
Q Consensus 245 ~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~ 312 (483)
+.+++.|+ + +.+.+||+.+.+-....... ......++...++.+++.++.++
T Consensus 403 ~~~l~~~~-d------------g~i~iwd~~~g~~~~~~~~~---~~~~v~~v~~~~~~l~~~~~~~g 454 (464)
T 3v7d_B 403 DNILVSGS-E------------NQFNIYNLRSGKLVHANILK---DADQIWSVNFKGKTLVAAVEKDG 454 (464)
T ss_dssp SSEEEEEE-T------------TEEEEEETTTCCEEESCTTT---TCSEEEEEEEETTEEEEEEEETT
T ss_pred CCEEEEec-C------------CeEEEEECCCCcEEehhhcc---CCCcEEEEEecCCEEEEEEEeCC
Confidence 66666665 2 35889999887654421211 11222333334666666665443
No 128
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=92.92 E-value=5.8 Score=36.75 Aligned_cols=117 Identities=9% Similarity=0.005 Sum_probs=56.6
Q ss_pred EEEECCcEEEEEcccCCCccccceEEEEcC--CCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CC-EEEEEccccCCCC
Q 011542 25 AVNIGKSKVVVFGGLVDKRFLSDVVVYDID--NKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DC-HMFIFGGRFGSRR 100 (483)
Q Consensus 25 ~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~-~iyv~GG~~~~~~ 100 (483)
++...+++.+++++.++ ..+.+|++. ++++..+..... +. .. ..++.. ++ .||+.+..+
T Consensus 43 ~~~spdg~~l~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~-------~~-~~-~~~~~s~dg~~l~~~~~~~---- 105 (343)
T 1ri6_A 43 MVVSPDKRYLYVGVRPE----FRVLAYRIAPDDGALTFAAESAL-------PG-SL-THISTDHQGQFVFVGSYNA---- 105 (343)
T ss_dssp EEECTTSSEEEEEETTT----TEEEEEEECTTTCCEEEEEEEEC-------SS-CC-SEEEECTTSSEEEEEETTT----
T ss_pred EEECCCCCEEEEeecCC----CeEEEEEecCCCCceeecccccc-------CC-CC-cEEEEcCCCCEEEEEecCC----
Confidence 44444555444444322 457777776 778877654421 11 11 223332 34 466554321
Q ss_pred CccEEEEECCCC-eEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCC-CceEE
Q 011542 101 LGDFWVLDTDIW-QWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTIS-LEWMQ 167 (483)
Q Consensus 101 ~~~~~~yd~~t~-~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t-~~W~~ 167 (483)
+.+.+||+..+ ....+.. .+.....++++...++ .+|+.+.. ...+.+||+.+ .+...
T Consensus 106 -~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~ 166 (343)
T 1ri6_A 106 -GNVSVTRLEDGLPVGVVDV---VEGLDGCHSANISPDNRTLWVPALK-----QDRICLFTVSDDGHLVA 166 (343)
T ss_dssp -TEEEEEEEETTEEEEEEEE---ECCCTTBCCCEECTTSSEEEEEEGG-----GTEEEEEEECTTSCEEE
T ss_pred -CeEEEEECCCCcccccccc---ccCCCCceEEEECCCCCEEEEecCC-----CCEEEEEEecCCCceee
Confidence 24778887322 2222222 1111122333443343 67766522 24588999887 66653
No 129
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=92.77 E-value=5.7 Score=38.12 Aligned_cols=116 Identities=8% Similarity=0.023 Sum_probs=57.5
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCC--cEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCCCCcc
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRRLGD 103 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~~~~ 103 (483)
..++.+++.|+.+ ..+.+||..+. ....+.... .... .-.+++.. ++.+++.|+.++ .
T Consensus 76 s~~~~~l~~~~~d-----g~v~vw~~~~~~~~~~~~~~~~-------~h~~-~v~~~~~~~~~~~~l~s~~~dg-----~ 137 (416)
T 2pm9_A 76 SHNNKIIAGALDN-----GSLELYSTNEANNAINSMARFS-------NHSS-SVKTVKFNAKQDNVLASGGNNG-----E 137 (416)
T ss_dssp CSSSSCEEEEESS-----SCEEEECCSSTTSCCCEEEECC-------CSSS-CCCEEEECSSSTTBEEEECSSS-----C
T ss_pred CCCCCeEEEEccC-----CeEEEeecccccccccchhhcc-------CCcc-ceEEEEEcCCCCCEEEEEcCCC-----e
Confidence 3556677777653 34788888761 111222111 0111 11223332 256777776543 4
Q ss_pred EEEEECCCCe------EE-EeecCCCCCCCCcccEEEEECC-cEEEEEecCCCCcCCccEEEEECCCCceEEe
Q 011542 104 FWVLDTDIWQ------WS-ELTSFGDLPSPRDFAAASAIGN-RKIVMYGGWDGKKWLSDVYVLDTISLEWMQL 168 (483)
Q Consensus 104 ~~~yd~~t~~------W~-~l~~~~~~p~~r~~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i 168 (483)
+.+||..+.. -. .+.. .......-.+++...+ +.+++.|+.++ .+.+||+.+.+-...
T Consensus 138 v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~ 203 (416)
T 2pm9_A 138 IFIWDMNKCTESPSNYTPLTPGQ--SMSSVDEVISLAWNQSLAHVFASAGSSN-----FASIWDLKAKKEVIH 203 (416)
T ss_dssp EEBCBTTTTSSCTTTCCCBCCCC--SCCSSCCCCEEEECSSCTTEEEEESSSS-----CEEEEETTTTEEEEE
T ss_pred EEEEECCCCcccccccccccccc--ccCCCCCeeEEEeCCCCCcEEEEEcCCC-----CEEEEECCCCCcceE
Confidence 7788887654 11 1100 0011112223333333 46777777543 488999988765544
No 130
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=92.75 E-value=5.5 Score=36.80 Aligned_cols=187 Identities=10% Similarity=-0.055 Sum_probs=90.3
Q ss_pred EECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCC-------C
Q 011542 27 NIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGS-------R 99 (483)
Q Consensus 27 ~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~-------~ 99 (483)
...++.+++.. .+.+++||+.++++..+..... ..+..|....++.-++++|+. ..... .
T Consensus 61 ~~~dG~l~v~~-------~~~l~~~d~~~g~~~~~~~~~~-----~~~~~~~~di~~d~dG~l~~~-~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 61 LRQSGGYVATI-------GTKFCALNWKEQSAVVLATVDN-----DKKNNRFNDGKVDPAGRYFAG-TMAEETAPAVLER 127 (297)
T ss_dssp EBTTSSEEEEE-------TTEEEEEETTTTEEEEEEECCT-----TCSSEEEEEEEECTTSCEEEE-EEECCSBTTBCCT
T ss_pred ECCCCCEEEEE-------CCeEEEEECCCCcEEEEEecCC-----CCCCCCCCCEEECCCCCEEEe-cCCcccccccccC
Confidence 34455655542 1468999999999887764321 112223332222235677763 22211 1
Q ss_pred CCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEEC--CCCceEEeccCCCCCC
Q 011542 100 RLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDT--ISLEWMQLPVTGSVPP 176 (483)
Q Consensus 100 ~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~--~t~~W~~i~~~~~~p~ 176 (483)
....++++|+.. +...+.. ... ....++...++ .+|+.... .+.+++||. .++.......-...+.
T Consensus 128 ~~~~l~~~d~~g-~~~~~~~--~~~---~pngi~~spdg~~lyv~~~~-----~~~i~~~~~d~~~G~~~~~~~~~~~~~ 196 (297)
T 3g4e_A 128 HQGALYSLFPDH-HVKKYFD--QVD---ISNGLDWSLDHKIFYYIDSL-----SYSVDAFDYDLQTGQISNRRSVYKLEK 196 (297)
T ss_dssp TCEEEEEECTTS-CEEEEEE--EES---BEEEEEECTTSCEEEEEEGG-----GTEEEEEEECTTTCCEEEEEEEEECCG
T ss_pred CCcEEEEEECCC-CEEEEee--ccc---cccceEEcCCCCEEEEecCC-----CCcEEEEeccCCCCcccCcEEEEECCC
Confidence 234688898863 3333321 111 11233333343 68877542 356888875 5555432110001111
Q ss_pred -CCcCceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEe---CCEEEEEc
Q 011542 177 -PRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSG---GHYLLLFG 251 (483)
Q Consensus 177 -~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~---~~~i~v~G 251 (483)
...-..+++. +++|||..... ..+.+||+++.+....- ..|..+.. +++.. ++.|||..
T Consensus 197 ~~~~p~g~~~d~~G~lwva~~~~------------~~v~~~d~~tG~~~~~i---~~p~~~~t-~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 197 EEQIPDGMCIDAEGKLWVACYNG------------GRVIRLDPVTGKRLQTV---KLPVDKTT-SCCFGGKNYSEMYVTC 260 (297)
T ss_dssp GGCEEEEEEEBTTSCEEEEEETT------------TEEEEECTTTCCEEEEE---ECSSSBEE-EEEEESGGGCEEEEEE
T ss_pred CCCCCCeeEECCCCCEEEEEcCC------------CEEEEEcCCCceEEEEE---ECCCCCce-EEEEeCCCCCEEEEEc
Confidence 1111233333 57888875321 33667799876654332 23333322 23332 35788876
Q ss_pred CC
Q 011542 252 GH 253 (483)
Q Consensus 252 G~ 253 (483)
..
T Consensus 261 ~~ 262 (297)
T 3g4e_A 261 AR 262 (297)
T ss_dssp BC
T ss_pred CC
Confidence 54
No 131
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=92.74 E-value=6.6 Score=36.96 Aligned_cols=221 Identities=10% Similarity=-0.023 Sum_probs=101.4
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE-ECCEEEEEccccCCCCCccEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~~iyv~GG~~~~~~~~~~~~y 107 (483)
.++.+++.|+.++ .+.++|..+..-...-.. ... .-.+++. -++..++.||.++ .+.+|
T Consensus 65 ~d~~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~---------~~~-~v~~~~~s~~~~~l~s~~~d~-----~v~iw 124 (340)
T 1got_B 65 TDSRLLLSASQDG-----KLIIWDSYTTNKVHAIPL---------RSS-WVMTCAYAPSGNYVACGGLDN-----ICSIY 124 (340)
T ss_dssp TTSSEEEEEETTT-----EEEEEETTTCCEEEEEEC---------SSS-CEEEEEECTTSSEEEEEETTC-----EEEEE
T ss_pred CCCCEEEEEeCCC-----cEEEEECCCCCcceEeec---------CCc-cEEEEEECCCCCEEEEEeCCC-----eEEEE
Confidence 5566777777643 478889877654332111 111 1122222 2556777777543 47788
Q ss_pred ECCCCe--EEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEE
Q 011542 108 DTDIWQ--WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATM 185 (483)
Q Consensus 108 d~~t~~--W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~ 185 (483)
|+.+.. ........ ... ..-.++....++. ++.|+.+ ..+.+||+.+.+-...- .+ .. ..-.++..
T Consensus 125 ~~~~~~~~~~~~~~~~-~h~-~~v~~~~~~~~~~-l~s~s~d-----~~i~~wd~~~~~~~~~~-~~--h~-~~v~~~~~ 192 (340)
T 1got_B 125 NLKTREGNVRVSRELA-GHT-GYLSCCRFLDDNQ-IVTSSGD-----TTCALWDIETGQQTTTF-TG--HT-GDVMSLSL 192 (340)
T ss_dssp ETTTCSBSCEEEEEEE-CCS-SCEEEEEEEETTE-EEEEETT-----SCEEEEETTTTEEEEEE-CC--CS-SCEEEEEE
T ss_pred ECccCCCcceeEEEec-CCC-ccEEEEEECCCCc-EEEEECC-----CcEEEEECCCCcEEEEE-cC--CC-CceEEEEE
Confidence 876542 11111100 011 1112222334545 4555543 34788999887654322 01 11 11122233
Q ss_pred e-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCCCCCCCCcccc
Q 011542 186 V-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLSRYD 263 (483)
Q Consensus 186 ~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~ 263 (483)
. ++++++.|+..+ .+..||+.+..-...- ....... .+++. -++..++.|+.+
T Consensus 193 ~~~~~~l~sg~~d~------------~v~~wd~~~~~~~~~~---~~h~~~v-~~v~~~p~~~~l~s~s~d--------- 247 (340)
T 1got_B 193 APDTRLFVSGACDA------------SAKLWDVREGMCRQTF---TGHESDI-NAICFFPNGNAFATGSDD--------- 247 (340)
T ss_dssp CTTSSEEEEEETTS------------CEEEEETTTCSEEEEE---CCCSSCE-EEEEECTTSSEEEEEETT---------
T ss_pred CCCCCEEEEEeCCC------------cEEEEECCCCeeEEEE---cCCcCCE-EEEEEcCCCCEEEEEcCC---------
Confidence 3 456777776542 2344566554432221 0111111 12233 345666666643
Q ss_pred eeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEE--CCEEEEEccCCC
Q 011542 264 IYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL--GSLYLLFGGFDG 312 (483)
Q Consensus 264 ~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~--~~~i~v~GG~~~ 312 (483)
..+.+||+.+..-...-.. +.....-.++.+ ++.+++.|+.++
T Consensus 248 ---~~v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~g~~d~ 292 (340)
T 1got_B 248 ---ATCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLLAGYDDF 292 (340)
T ss_dssp ---SCEEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ---CcEEEEECCCCcEEEEEcc---CCcccceEEEEECCCCCEEEEECCCC
Confidence 3478888876543221111 111111222222 567777877654
No 132
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=92.69 E-value=0.94 Score=44.79 Aligned_cols=109 Identities=15% Similarity=0.093 Sum_probs=60.7
Q ss_pred CcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE--ECCEEEEEccccCCCCCccEEEE
Q 011542 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA--IDCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 30 ~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~--~~~~iyv~GG~~~~~~~~~~~~y 107 (483)
++.+++.|+.++ .+.++|..+..-..+... .+.. ..-.+++. .++.+++.|+.++ .+.++
T Consensus 131 ~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~-------~gH~-~~V~~l~f~p~~~~~l~s~s~D~-----~v~iw 192 (435)
T 4e54_B 131 HPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKG-------IGAG-GSITGLKFNPLNTNQFYASSMEG-----TTRLQ 192 (435)
T ss_dssp CTTCEEEEETTS-----CEEEECSSCCSCCEEECC-------CSSS-CCCCEEEECSSCTTEEEEECSSS-----CEEEE
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCCceeEEEc-------cCCC-CCEEEEEEeCCCCCEEEEEeCCC-----EEEEe
Confidence 456788887654 488888877654333211 0111 11122333 2456666776553 37788
Q ss_pred ECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCC
Q 011542 108 DTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 108 d~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
|..++.-..+.... .......++....++.+++.|+.++ .+.++|+.+.
T Consensus 193 d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~dg-----~i~~wd~~~~ 241 (435)
T 4e54_B 193 DFKGNILRVFASSD--TINIWFCSLDVSASSRMVVTGDNVG-----NVILLNMDGK 241 (435)
T ss_dssp ETTSCEEEEEECCS--SCSCCCCCEEEETTTTEEEEECSSS-----BEEEEESSSC
T ss_pred eccCCceeEEeccC--CCCccEEEEEECCCCCEEEEEeCCC-----cEeeeccCcc
Confidence 99887766554311 1122223344445667888887644 4778887654
No 133
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=92.60 E-value=6.3 Score=36.41 Aligned_cols=108 Identities=9% Similarity=-0.051 Sum_probs=57.6
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~y 107 (483)
..++.+++.|+.++ .+.++|..+..-...-.. ...........-+++.++.|+.++ .+.++
T Consensus 22 sp~~~~l~s~~~dg-----~v~lWd~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~s~s~d~-----~i~vw 82 (304)
T 2ynn_A 22 HPTEPWVLTTLYSG-----RVELWNYETQVEVRSIQV---------TETPVRAGKFIARKNWIIVGSDDF-----RIRVF 82 (304)
T ss_dssp CSSSSEEEEEETTS-----EEEEEETTTTEEEEEEEC---------CSSCEEEEEEEGGGTEEEEEETTS-----EEEEE
T ss_pred CCCCCEEEEEcCCC-----cEEEEECCCCceeEEeec---------cCCcEEEEEEeCCCCEEEEECCCC-----EEEEE
Confidence 35667778787643 478899887754332111 111112222233556666676543 47888
Q ss_pred ECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCC
Q 011542 108 DTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 108 d~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
|..+++-...-. . ....-.+++...++.+++.|+.++ .+.++|..++
T Consensus 83 d~~~~~~~~~~~---~-h~~~v~~~~~~~~~~~l~sgs~D~-----~v~lWd~~~~ 129 (304)
T 2ynn_A 83 NYNTGEKVVDFE---A-HPDYIRSIAVHPTKPYVLSGSDDL-----TVKLWNWENN 129 (304)
T ss_dssp ETTTCCEEEEEE---C-CSSCEEEEEECSSSSEEEEEETTS-----CEEEEEGGGT
T ss_pred ECCCCcEEEEEe---C-CCCcEEEEEEcCCCCEEEEECCCC-----eEEEEECCCC
Confidence 988765322111 0 111122333344556777787654 4677887654
No 134
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=92.55 E-value=7.9 Score=37.35 Aligned_cols=181 Identities=10% Similarity=-0.037 Sum_probs=89.7
Q ss_pred cceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCC
Q 011542 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (483)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p 124 (483)
..+.+||..+++....... .....-.+++.. ++.+++.|+.++ .+.+||+.+.+-...-.
T Consensus 113 ~~v~lw~~~~~~~~~~~~~---------~~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~----- 173 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAET---------DESTYVASVKWSHDGSFLSVGLGNG-----LVDIYDVESQTKLRTMA----- 173 (401)
T ss_dssp TEEEEEETTTCCEEEEEEC---------CTTCCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEEC-----
T ss_pred CeEEEeeCCCCcEeEeeec---------CCCCCEEEEEECCCCCEEEEECCCC-----eEEEEECcCCeEEEEec-----
Confidence 3589999999887665432 111112222222 556777776543 48889998776443321
Q ss_pred CCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe-CCEEEEEccCCCCCCcc
Q 011542 125 SPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIM 203 (483)
Q Consensus 125 ~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~ 203 (483)
.......++...+ .+++.|+.+ ..+.+||+.+..-...... .. ...-.++... ++.+++.|+..
T Consensus 174 ~~~~~v~~~~~~~-~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~-~~--~~~v~~~~~~~~~~~l~s~~~d------ 238 (401)
T 4aez_A 174 GHQARVGCLSWNR-HVLSSGSRS-----GAIHHHDVRIANHQIGTLQ-GH--SSEVCGLAWRSDGLQLASGGND------ 238 (401)
T ss_dssp CCSSCEEEEEEET-TEEEEEETT-----SEEEEEETTSSSCEEEEEE-CC--SSCEEEEEECTTSSEEEEEETT------
T ss_pred CCCCceEEEEECC-CEEEEEcCC-----CCEEEEecccCcceeeEEc-CC--CCCeeEEEEcCCCCEEEEEeCC------
Confidence 1111222233333 577777754 3578888874332211110 11 1111222233 45667777643
Q ss_pred cceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE--eCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceE
Q 011542 204 GDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS--GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWK 280 (483)
Q Consensus 204 ~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 280 (483)
..+..||+.+..-...-. ....+ -.+++. .+..+++.||...+ ..+.+||+.+..-.
T Consensus 239 ------~~v~iwd~~~~~~~~~~~--~~~~~--v~~~~~~p~~~~ll~~~~gs~d----------~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 239 ------NVVQIWDARSSIPKFTKT--NHNAA--VKAVAWCPWQSNLLATGGGTMD----------KQIHFWNAATGARV 297 (401)
T ss_dssp ------SCEEEEETTCSSEEEEEC--CCSSC--CCEEEECTTSTTEEEEECCTTT----------CEEEEEETTTCCEE
T ss_pred ------CeEEEccCCCCCccEEec--CCcce--EEEEEECCCCCCEEEEecCCCC----------CEEEEEECCCCCEE
Confidence 234456766544332211 11111 112333 34567777753222 45888998766543
No 135
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=92.53 E-value=0.93 Score=43.62 Aligned_cols=110 Identities=12% Similarity=-0.014 Sum_probs=58.9
Q ss_pred cceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccC-CCCCccEEEEECCCCeEEEeecCCCC
Q 011542 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFG-SRRLGDFWVLDTDIWQWSELTSFGDL 123 (483)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~-~~~~~~~~~yd~~t~~W~~l~~~~~~ 123 (483)
..++++|+.+++-..+... .....+....- +++.+++....+ ......+|.+|+.+.....+.. .
T Consensus 168 ~~l~~~d~~~g~~~~l~~~----------~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~ 234 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQE----------NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT---H 234 (388)
T ss_dssp EEEEEEETTTCCEEEEEEE----------SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC---C
T ss_pred ceEEEEECCCCceEEeecC----------CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee---C
Confidence 5789999999877666532 12233334443 444444433222 2224579999998877666652 1
Q ss_pred CCCCcccEEEEECCcE-EEEEecCCCCcCCccEEEEECCCCceEEec
Q 011542 124 PSPRDFAAASAIGNRK-IVMYGGWDGKKWLSDVYVLDTISLEWMQLP 169 (483)
Q Consensus 124 p~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~ 169 (483)
.........+...+++ |++..... ......++++|+.+++-+.+.
T Consensus 235 ~~~~~~~~~~~spdg~~l~~~~~~~-~~~~~~l~~~d~~~g~~~~l~ 280 (388)
T 3pe7_A 235 AEGESCTHEFWVPDGSALVYVSYLK-GSPDRFIYSADPETLENRQLT 280 (388)
T ss_dssp CTTEEEEEEEECTTSSCEEEEEEET-TCCCEEEEEECTTTCCEEEEE
T ss_pred CCCcccccceECCCCCEEEEEecCC-CCCcceEEEEecCCCceEEEE
Confidence 1111111222223444 54443322 222235999999999877765
No 136
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=92.44 E-value=1.3 Score=42.59 Aligned_cols=122 Identities=12% Similarity=0.066 Sum_probs=50.6
Q ss_pred ECCcEEEEEcccCCCcc-ccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcc-eeEEEEE-CCEEEEEccccCCCCCccE
Q 011542 28 IGKSKVVVFGGLVDKRF-LSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRA-FHIAVAI-DCHMFIFGGRFGSRRLGDF 104 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~-~h~~~~~-~~~iyv~GG~~~~~~~~~~ 104 (483)
-.||++++.|+.+.... -..++.|+..+..=...... ....... -.+++.. +++++ .|+.++ .+
T Consensus 51 SpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~-------~~~~~~~~V~~~~~s~d~~~l-~~s~dg-----~v 117 (357)
T 4g56_B 51 RRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT-------AGVQTEAGVTDVAWVSEKGIL-VASDSG-----AV 117 (357)
T ss_dssp CSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCS-------EEEECSSCEEEEEEETTTEEE-EEETTS-----CE
T ss_pred CCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEec-------ccCCCCCCEEEEEEcCCCCEE-EEECCC-----EE
Confidence 47788888887543222 13467776554321110000 0000001 1122223 45554 454332 47
Q ss_pred EEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEE
Q 011542 105 WVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQ 167 (483)
Q Consensus 105 ~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~ 167 (483)
.++|+.+++-..............-.+++...+++.++.|+.++ .+.++|..+.+-..
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg-----~v~iwd~~~~~~~~ 175 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF-----SVKVWDLSQKAVLK 175 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS-----CEEEEETTTTEEEE
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC-----eEEEEECCCCcEEE
Confidence 77887765422111000000111122333345667778887644 47888998876544
No 137
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=92.11 E-value=5.4 Score=37.98 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=55.4
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWV 106 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~ 106 (483)
..++..++.|+.++ .+.++|+.+++-... . ...........+.. +..+++.|+.++ .+.+
T Consensus 136 spdg~~l~sgs~d~-----~i~iwd~~~~~~~~~--~-------~~h~~~V~~~~~~~~~~~~l~s~s~D~-----~v~i 196 (344)
T 4gqb_B 136 LSSGTQAVSGSKDI-----CIKVWDLAQQVVLSS--Y-------RAHAAQVTCVAASPHKDSVFLSCSEDN-----RILL 196 (344)
T ss_dssp CTTSSEEEEEETTS-----CEEEEETTTTEEEEE--E-------CCCSSCEEEEEECSSCTTEEEEEETTS-----CEEE
T ss_pred CCCCCEEEEEeCCC-----eEEEEECCCCcEEEE--E-------cCcCCceEEEEecCCCCCceeeecccc-----cccc
Confidence 35566777776543 478889887753322 1 01111111122222 346777777553 4778
Q ss_pred EECCCCeEEEeecCCCCCCCCcccEEEEE--CCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 107 LDTDIWQWSELTSFGDLPSPRDFAAASAI--GNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 107 yd~~t~~W~~l~~~~~~p~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
+|..+.+-...-. .........++.+ .++.+++.|+.++ .+.+||+.+.+
T Consensus 197 wd~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~l~sg~~dg-----~v~~wd~~~~~ 248 (344)
T 4gqb_B 197 WDTRCPKPASQIG---CSAPGYLPTSLAWHPQQSEVFVFGDENG-----TVSLVDTKSTS 248 (344)
T ss_dssp EETTSSSCEEECC-------CCCEEEEEECSSCTTEEEEEETTS-----EEEEEESCC--
T ss_pred ccccccceeeeee---cceeeccceeeeecCCCCcceEEeccCC-----cEEEEECCCCc
Confidence 8988765332210 1111111122222 3446888887543 47888987654
No 138
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=92.07 E-value=11 Score=39.99 Aligned_cols=209 Identities=11% Similarity=0.056 Sum_probs=101.1
Q ss_pred cccceEEEEcC---CCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecC
Q 011542 44 FLSDVVVYDID---NKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSF 120 (483)
Q Consensus 44 ~~~~~~~yd~~---~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~ 120 (483)
....+|+.+.. ...|..+-....... ............-+++.++++...++.....++++|+.+++......
T Consensus 131 ~~~~l~~~~~~~~~~~~~~~lld~~~l~~---~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~- 206 (741)
T 1yr2_A 131 NQSQLLVRPADAPVGTKGRVLLDPNTWAK---DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL- 206 (741)
T ss_dssp SSCEEEEEETTSCTTCCCEEEECGGGCC-------EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-
T ss_pred eEEEEEEEcCCccCCCCCEEEECHHHhcc---CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-
Confidence 35678998887 677877642211000 00001111122225666666554433333469999999998765431
Q ss_pred CCCCCCCcccEEEEECCcEEEEEecCCCC---------cCCccEEEEECCCCce--EEeccCCCCCCCCcCceEEEe-CC
Q 011542 121 GDLPSPRDFAAASAIGNRKIVMYGGWDGK---------KWLSDVYVLDTISLEW--MQLPVTGSVPPPRCGHTATMV-EK 188 (483)
Q Consensus 121 ~~~p~~r~~~~~~~~~~~~iyv~GG~~~~---------~~~~~v~~yd~~t~~W--~~i~~~~~~p~~r~~~~~~~~-~~ 188 (483)
+.... ...+-..|+.||+ +..+.. .....++.+++.+..- ..+. . ....+......... ++
T Consensus 207 ---~~~~~-~~~~wspD~~l~~-~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~-~-~~~~~~~~~~~~~SpDG 279 (741)
T 1yr2_A 207 ---KWVKF-SGLAWLGNDALLY-SRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVF-A-TPELPKRGHGASVSSDG 279 (741)
T ss_dssp ---EEEES-CCCEESTTSEEEE-EECCCC--------CCCCCEEEEEETTSCGGGCEEEE-C-CTTCTTCEEEEEECTTS
T ss_pred ---CCcee-ccEEEECCCEEEE-EEecCcccccccccCCCCCEEEEEECCCCchhCEEEe-c-cCCCCeEEEEEEECCCC
Confidence 11111 1222223434444 333222 1245688888877652 2222 0 11112222222222 44
Q ss_pred -EEEEEccCCCCCCcccceecccccccccCCCC--C-eEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccce
Q 011542 189 -RLLIYGGRGGGGPIMGDLWALKGLIEEENETP--G-WTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDI 264 (483)
Q Consensus 189 -~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~--~-W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~ 264 (483)
.|++....... .. +.++.+|+++. . |..+.. ....... .+...++.||+....+.
T Consensus 280 ~~l~~~~~~~~~--~~------~~l~~~d~~~~~~~~~~~l~~---~~~~~~~-~~~~dg~~l~~~s~~~~--------- 338 (741)
T 1yr2_A 280 RWVVITSSEGTD--PV------NTVHVARVTNGKIGPVTALIP---DLKAQWD-FVDGVGDQLWFVSGDGA--------- 338 (741)
T ss_dssp CEEEEEEECTTC--SC------CEEEEEEEETTEECCCEEEEC---SSSSCEE-EEEEETTEEEEEECTTC---------
T ss_pred CEEEEEEEccCC--Cc------ceEEEEECCCCCCcccEEecC---CCCceEE-EEeccCCEEEEEECCCC---------
Confidence 45444432211 12 33444577666 6 887762 1222222 22346778887754322
Q ss_pred eeCcEEEEEcCC--CceEEccC
Q 011542 265 YYNDTIILDRLS--AQWKRLPI 284 (483)
Q Consensus 265 ~~~~v~~yd~~~--~~W~~v~~ 284 (483)
....++++|+.+ ..|..+-.
T Consensus 339 ~~~~l~~~d~~~~~~~~~~l~~ 360 (741)
T 1yr2_A 339 PLKKIVRVDLSGSTPRFDTVVP 360 (741)
T ss_dssp TTCEEEEEECSSSSCEEEEEEC
T ss_pred CCCEEEEEeCCCCccccEEEec
Confidence 235699999887 57988754
No 139
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=92.03 E-value=8.6 Score=36.60 Aligned_cols=111 Identities=14% Similarity=-0.025 Sum_probs=55.8
Q ss_pred EEECCcEEEEEcccCCCccccceEEEEcCCCc----EEeeeecCCCCCCCCCCCCcceeEEEEEC----C---EEEEEcc
Q 011542 26 VNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKL----WFQPECTGNGSNGQVGPGPRAFHIAVAID----C---HMFIFGG 94 (483)
Q Consensus 26 ~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~----W~~~~~~~~~~~~~~~p~~R~~h~~~~~~----~---~iyv~GG 94 (483)
+.... .+++.|+.+ ..+.+||..+.. +..+.... .......+....-+ + .+++.|+
T Consensus 22 ~~~~~-~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 22 VSACN-SFTVSCSGD-----GYLKVWDNKLLDNENPKDKSYSHF-------VHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp EEECS-SEEEEEETT-----SEEEEEESBCCTTCCGGGGEEEEE-------CCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred EEecC-CeEEEEcCC-----CEEEEEECCCcccccCCCcceEEe-------cCCCcEEEEEEecccccCCccccEEEEEc
Confidence 33444 566767654 358889988776 22221110 01111122222234 5 7777777
Q ss_pred ccCCCCCccEEEEECCCCe------EEEeecCCCCCC---CCcccEEEEE----CCcEE-EEEecCCCCcCCccEEEEEC
Q 011542 95 RFGSRRLGDFWVLDTDIWQ------WSELTSFGDLPS---PRDFAAASAI----GNRKI-VMYGGWDGKKWLSDVYVLDT 160 (483)
Q Consensus 95 ~~~~~~~~~~~~yd~~t~~------W~~l~~~~~~p~---~r~~~~~~~~----~~~~i-yv~GG~~~~~~~~~v~~yd~ 160 (483)
.++ .+.+||..+.. +..+.. .+. ...-.+++.. .++.. ++.|+.++ .+.+||+
T Consensus 89 ~dg-----~i~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~ 155 (397)
T 1sq9_A 89 FSG-----DLLFYRITREDETKKVIFEKLDL---LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG-----TTYIWKF 155 (397)
T ss_dssp TTS-----CEEEEEEEECTTTCCEEEEEECC---SCTTGGGSCEEEEEEECCC----CEEEEEEETTS-----CEEEEEE
T ss_pred CCC-----CEEEEEccCCcccccccceeecc---cccccCCCcEEEEEEeeccCCCCceEEEEEeCCC-----cEEEEeC
Confidence 543 47788876665 666652 211 1222333444 45566 77777643 4677776
Q ss_pred CC
Q 011542 161 IS 162 (483)
Q Consensus 161 ~t 162 (483)
.+
T Consensus 156 ~~ 157 (397)
T 1sq9_A 156 HP 157 (397)
T ss_dssp ES
T ss_pred Cc
Confidence 65
No 140
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=92.03 E-value=6.7 Score=37.31 Aligned_cols=106 Identities=12% Similarity=-0.005 Sum_probs=54.0
Q ss_pred CcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCCCCccEEEE
Q 011542 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 30 ~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~~~~~~~y 107 (483)
++.+++.|+.+ ..+.+||..+.+-...... +.+......... ++.+++.|+.++ .+.+|
T Consensus 111 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~ 171 (408)
T 4a11_B 111 DTGMFTSSSFD-----KTLKVWDTNTLQTADVFNF---------EETVYSHHMSPVSTKHCLVAVGTRGP-----KVQLC 171 (408)
T ss_dssp CTTCEEEEETT-----SEEEEEETTTTEEEEEEEC---------SSCEEEEEECSSCSSCCEEEEEESSS-----SEEEE
T ss_pred CCcEEEEEeCC-----CeEEEeeCCCCccceeccC---------CCceeeeEeecCCCCCcEEEEEcCCC-----eEEEE
Confidence 45567777653 3588899988765544321 111111111111 334667766443 48889
Q ss_pred ECCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCC
Q 011542 108 DTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 108 d~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
|+.+..-...-. . ....-.+++...++ .+++.|+.++ .+.+||+.+.
T Consensus 172 d~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~ll~~~~~dg-----~i~i~d~~~~ 219 (408)
T 4a11_B 172 DLKSGSCSHILQ---G-HRQEILAVSWSPRYDYILATASADS-----RVKLWDVRRA 219 (408)
T ss_dssp ESSSSCCCEEEC---C-CCSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTCS
T ss_pred eCCCcceeeeec---C-CCCcEEEEEECCCCCcEEEEEcCCC-----cEEEEECCCC
Confidence 987664322211 0 11111222333333 3777887644 3778888655
No 141
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=92.02 E-value=9.9 Score=37.33 Aligned_cols=116 Identities=11% Similarity=0.118 Sum_probs=56.5
Q ss_pred ECCcEE-EEEcccCCCccccceEEEEcC--CCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCcc
Q 011542 28 IGKSKV-VVFGGLVDKRFLSDVVVYDID--NKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGD 103 (483)
Q Consensus 28 ~~~~~l-~v~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~ 103 (483)
..++.. ++.|+.+ ..+.+||.. ++.....-... ..+..-.+++.. ++..++.|+.+ ..
T Consensus 111 s~d~~~l~~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~--------~~~~~v~~~~~sp~~~~l~~~~~~-----g~ 172 (450)
T 2vdu_B 111 TSDESRLIACADSD-----KSLLVFDVDKTSKNVLKLRKRF--------CFSKRPNAISIAEDDTTVIIADKF-----GD 172 (450)
T ss_dssp CTTSSEEEEEEGGG-----TEEEEEEECSSSSSCEEEEEEE--------ECSSCEEEEEECTTSSEEEEEETT-----SE
T ss_pred cCCCCEEEEEECCC-----CeEEEEECcCCCCceeeeeecc--------cCCCCceEEEEcCCCCEEEEEeCC-----Cc
Confidence 344554 5777654 347888887 54433221100 011111222222 55666666543 24
Q ss_pred EEEEECCCCeEEEeecCCCCC-CCCcccEEEEECC---cEEEEEecCCCCcCCccEEEEECCCCceEE
Q 011542 104 FWVLDTDIWQWSELTSFGDLP-SPRDFAAASAIGN---RKIVMYGGWDGKKWLSDVYVLDTISLEWMQ 167 (483)
Q Consensus 104 ~~~yd~~t~~W~~l~~~~~~p-~~r~~~~~~~~~~---~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~ 167 (483)
++.++..+....... ...+. ....-.+++...+ +.+++.|+.+ ..+.+||+.+.+-..
T Consensus 173 v~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 173 VYSIDINSIPEEKFT-QEPILGHVSMLTDVHLIKDSDGHQFIITSDRD-----EHIKISHYPQCFIVD 234 (450)
T ss_dssp EEEEETTSCCCSSCC-CCCSEECSSCEEEEEEEECTTSCEEEEEEETT-----SCEEEEEESCTTCEE
T ss_pred EEEEecCCccccccc-ceeeecccCceEEEEEcCCCCCCcEEEEEcCC-----CcEEEEECCCCceee
Confidence 788887665422100 00011 1111223333445 6788888764 358888888776543
No 142
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=91.98 E-value=7.2 Score=36.23 Aligned_cols=116 Identities=11% Similarity=0.142 Sum_probs=59.1
Q ss_pred CcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-C-CEEEEEccccCCCCCccEEEE
Q 011542 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-D-CHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 30 ~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~-~~iyv~GG~~~~~~~~~~~~y 107 (483)
++.+|+.++.+ +.++++|+.+++....-.. +....-+.++.. + +.+|+.+..+ ..++++
T Consensus 10 ~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~---------~~~~~~~~~~~s~dg~~~~v~~~~~-----~~i~~~ 70 (349)
T 1jmx_B 10 GHEYMIVTNYP-----NNLHVVDVASDTVYKSCVM---------PDKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGI 70 (349)
T ss_dssp TCEEEEEEETT-----TEEEEEETTTTEEEEEEEC---------SSCCSSCEEEECTTSSEEEEEETTT-----TEEEEE
T ss_pred CCEEEEEeCCC-----CeEEEEECCCCcEEEEEec---------CCCCCCceeEECCCCCEEEEEeCCC-----CcEEEE
Confidence 45777777643 4689999998875443221 110011233333 3 3577775322 358999
Q ss_pred ECCCCeEEEeecCCCCCC--CCcccEEEEECCc-EEEEEecC---CCCc---CCccEEEEECCCCc
Q 011542 108 DTDIWQWSELTSFGDLPS--PRDFAAASAIGNR-KIVMYGGW---DGKK---WLSDVYVLDTISLE 164 (483)
Q Consensus 108 d~~t~~W~~l~~~~~~p~--~r~~~~~~~~~~~-~iyv~GG~---~~~~---~~~~v~~yd~~t~~ 164 (483)
|+.+++-...-..+..+. ...-+.++...++ .+|+.+.. .... ..+.+++||+.+++
T Consensus 71 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 71 DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp ETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred eCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 999887654322111110 1112334444444 55554421 0000 12578999988743
No 143
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=91.89 E-value=7.9 Score=35.89 Aligned_cols=106 Identities=15% Similarity=0.198 Sum_probs=56.2
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCc----EEeeeecCCCCCCCCCCCCcceeEEEEECCE-EEEEccccCCCCCc
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKL----WFQPECTGNGSNGQVGPGPRAFHIAVAIDCH-MFIFGGRFGSRRLG 102 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~----W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~-iyv~GG~~~~~~~~ 102 (483)
..++.+++.|+.+ ..+.+||..+.. -..+.. ........+..-++. .++.|+.++
T Consensus 20 s~~~~~l~~~~~d-----~~v~iw~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~l~~~~~dg----- 79 (342)
T 1yfq_A 20 IPSKSLLLITSWD-----GSLTVYKFDIQAKNVDLLQSLR----------YKHPLLCCNFIDNTDLQIYVGTVQG----- 79 (342)
T ss_dssp EGGGTEEEEEETT-----SEEEEEEEETTTTEEEEEEEEE----------CSSCEEEEEEEESSSEEEEEEETTS-----
T ss_pred cCCCCEEEEEcCC-----CeEEEEEeCCCCccccceeeee----------cCCceEEEEECCCCCcEEEEEcCCC-----
Confidence 4456677777653 357788877765 333221 111122222233566 677776543
Q ss_pred cEEEEEC-CCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCC
Q 011542 103 DFWVLDT-DIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTIS 162 (483)
Q Consensus 103 ~~~~yd~-~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t 162 (483)
.+.+||+ .+..-..+.. .+....-.+++... +.+++.|+.++ .+.+||+.+
T Consensus 80 ~i~~wd~~~~~~~~~~~~---~~~~~~v~~l~~~~-~~~l~s~~~d~-----~i~iwd~~~ 131 (342)
T 1yfq_A 80 EILKVDLIGSPSFQALTN---NEANLGICRICKYG-DDKLIAASWDG-----LIEVIDPRN 131 (342)
T ss_dssp CEEEECSSSSSSEEECBS---CCCCSCEEEEEEET-TTEEEEEETTS-----EEEEECHHH
T ss_pred eEEEEEeccCCceEeccc---cCCCCceEEEEeCC-CCEEEEEcCCC-----eEEEEcccc
Confidence 5889999 8877655442 11112222333333 45666776543 467777654
No 144
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=91.89 E-value=4.2 Score=41.72 Aligned_cols=199 Identities=12% Similarity=0.071 Sum_probs=92.1
Q ss_pred cceEEEEcCCCcEEeeeec-CCCCCC-CCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCC
Q 011542 46 SDVVVYDIDNKLWFQPECT-GNGSNG-QVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGD 122 (483)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~-~~~~~~-~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~ 122 (483)
+.+.++|..+.+-...-.. +...+. ...|.+|..+..+.- +..+|+-.. ..+.++++|..+.+-..+..
T Consensus 248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~-----~~g~i~vvd~~~~~~l~~~~--- 319 (543)
T 1nir_A 248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK-----ETGKVLLVNYKDIDNLTVTS--- 319 (543)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET-----TTTEEEEEECTTSSSCEEEE---
T ss_pred CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC-----CCCeEEEEEecCCCcceeEE---
Confidence 4577889887654332111 000000 001233433333333 345554432 22468899987643211111
Q ss_pred CCCCCcccEEEEECCcE-EEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe--CCEEEEEccCCCC
Q 011542 123 LPSPRDFAAASAIGNRK-IVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV--EKRLLIYGGRGGG 199 (483)
Q Consensus 123 ~p~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~ 199 (483)
++.++.-+.++.-.+++ +|+.+. ..+.+.++|+.+++-...-..+..|.+-.+... .. ++.+|+.+....
T Consensus 320 i~~~~~~~~~~~spdg~~l~va~~-----~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d- 392 (543)
T 1nir_A 320 IGAAPFLHDGGWDSSHRYFMTAAN-----NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGD- 392 (543)
T ss_dssp EECCSSCCCEEECTTSCEEEEEEG-----GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSS-
T ss_pred eccCcCccCceECCCCCEEEEEec-----CCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCC-
Confidence 12233444445544544 555442 245688899999876554333444444333222 23 367787764322
Q ss_pred CCcccceecccccccccCCCC-----CeEEeccCCCCCCCC-eeeEEEE--eCCEEEEEcCCCCCCCCcccceeeCcEEE
Q 011542 200 GPIMGDLWALKGLIEEENETP-----GWTQLKLPGQAPSSR-CGHTITS--GGHYLLLFGGHGTGGWLSRYDIYYNDTII 271 (483)
Q Consensus 200 ~~~~~d~~~l~~~~~yd~~~~-----~W~~~~~~g~~p~~r-~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~v~~ 271 (483)
+.+.++|.++. .|+.+.. .+... ....+.. .+..||+-.-.+.+ ....+.|.+
T Consensus 393 ----------~~V~v~d~~~~~~~~~~~~~v~~---l~~~g~~~~~v~~~pdg~~l~v~~~~~~~------~~~~~~v~v 453 (543)
T 1nir_A 393 ----------GSISLIGTDPKNHPQYAWKKVAE---LQGQGGGSLFIKTHPKSSHLYVDTTFNPD------ARISQSVAV 453 (543)
T ss_dssp ----------SEEEEEECCTTTCTTTBTSEEEE---EECSCSCCCCEECCTTCCEEEECCTTCSS------HHHHTCEEE
T ss_pred ----------ceEEEEEeCCCCCchhcCeEEEE---EEcCCCCceEEEcCCCCCcEEEecCCCCC------cccCceEEE
Confidence 23444565552 2765542 11111 1112222 34466663211111 123578999
Q ss_pred EEcCCCc
Q 011542 272 LDRLSAQ 278 (483)
Q Consensus 272 yd~~~~~ 278 (483)
||..+.+
T Consensus 454 ~d~~~~~ 460 (543)
T 1nir_A 454 FDLKNLD 460 (543)
T ss_dssp EETTCTT
T ss_pred EECCCCC
Confidence 9998765
No 145
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=91.86 E-value=2.9 Score=39.83 Aligned_cols=113 Identities=18% Similarity=0.085 Sum_probs=50.7
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCc-EEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKL-WFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFW 105 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~ 105 (483)
..++.+++.|+.++ .+.+||..+.. |....... .....-.+++.. ++++++.|+.++ .+.
T Consensus 64 s~~~~~l~s~s~d~-----~v~vwd~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~ 125 (377)
T 3dwl_C 64 APKSNRIVTCSQDR-----NAYVYEKRPDGTWKQTLVLL--------RLNRAATFVRWSPNEDKFAVGSGAR-----VIS 125 (377)
T ss_dssp CTTTCCEEEEETTS-----SEEEC------CCCCEEECC--------CCSSCEEEEECCTTSSCCEEEESSS-----CEE
T ss_pred eCCCCEEEEEeCCC-----eEEEEEcCCCCceeeeeEec--------ccCCceEEEEECCCCCEEEEEecCC-----eEE
Confidence 35567777777543 47888888776 54443221 111111222222 456667776543 367
Q ss_pred EEECCCCe-EEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 106 VLDTDIWQ-WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 106 ~yd~~t~~-W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
+||..+.+ |..+.... .+....-.+++...++.+++.|+.++ .+.+||+.+..
T Consensus 126 iwd~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~ 179 (377)
T 3dwl_C 126 VCYFEQENDWWVSKHLK-RPLRSTILSLDWHPNNVLLAAGCADR-----KAYVLSAYVRD 179 (377)
T ss_dssp ECCC-----CCCCEEEC-SSCCSCEEEEEECTTSSEEEEEESSS-----CEEEEEECCSS
T ss_pred EEEECCcccceeeeEee-cccCCCeEEEEEcCCCCEEEEEeCCC-----EEEEEEEEecc
Confidence 77876654 22222100 11122223333345567778887643 47778875443
No 146
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=91.73 E-value=3.5 Score=39.13 Aligned_cols=186 Identities=8% Similarity=0.025 Sum_probs=88.1
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCce
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEW 165 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 165 (483)
++.+++.||.++ .+.++|..++.|........ .....-.+++...++..++.|+.++ .+.++|..+..+
T Consensus 27 ~g~~las~~~D~-----~i~iw~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~s~D~-----~v~iw~~~~~~~ 95 (345)
T 3fm0_A 27 AGTLLASCGGDR-----RIRIWGTEGDSWICKSVLSE-GHQRTVRKVAWSPCGNYLASASFDA-----TTCIWKKNQDDF 95 (345)
T ss_dssp TSSCEEEEETTS-----CEEEEEEETTEEEEEEEECS-SCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEECCC-E
T ss_pred CCCEEEEEcCCC-----eEEEEEcCCCcceeeeeecc-ccCCcEEEEEECCCCCEEEEEECCC-----cEEEEEccCCCe
Confidence 566777777554 36778888887754332000 0111122233334567778887654 366778777776
Q ss_pred EEeccCCCCCCCCc-CceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCC-CeEEeccCCCCCCCCeeeEEEE
Q 011542 166 MQLPVTGSVPPPRC-GHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETP-GWTQLKLPGQAPSSRCGHTITS 242 (483)
Q Consensus 166 ~~i~~~~~~p~~r~-~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~-~W~~~~~~g~~p~~r~~~~~~~ 242 (483)
..+. .+..... -.+++.. ++++++.|+... .+..+|+.+. .+..+...... .... .+++.
T Consensus 96 ~~~~---~~~~h~~~v~~v~~sp~~~~l~s~s~D~------------~v~iwd~~~~~~~~~~~~~~~h-~~~v-~~~~~ 158 (345)
T 3fm0_A 96 ECVT---TLEGHENEVKSVAWAPSGNLLATCSRDK------------SVWVWEVDEEDEYECVSVLNSH-TQDV-KHVVW 158 (345)
T ss_dssp EEEE---EECCCSSCEEEEEECTTSSEEEEEETTS------------CEEEEEECTTSCEEEEEEECCC-CSCE-EEEEE
T ss_pred EEEE---EccCCCCCceEEEEeCCCCEEEEEECCC------------eEEEEECCCCCCeEEEEEecCc-CCCe-EEEEE
Confidence 5543 1111111 1222333 456677776532 2334455433 22222210011 1111 12222
Q ss_pred -eCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEE-CCEEEEEccCCCC
Q 011542 243 -GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL-GSLYLLFGGFDGK 313 (483)
Q Consensus 243 -~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~-~~~i~v~GG~~~~ 313 (483)
-++.+++.|+.+ ..+.+||..+..|..+..... . ...-.+++.. ++.+++.|+.++.
T Consensus 159 ~p~~~~l~s~s~d------------~~i~~w~~~~~~~~~~~~~~~-h-~~~v~~l~~sp~g~~l~s~s~D~~ 217 (345)
T 3fm0_A 159 HPSQELLASASYD------------DTVKLYREEEDDWVCCATLEG-H-ESTVWSLAFDPSGQRLASCSDDRT 217 (345)
T ss_dssp CSSSSCEEEEETT------------SCEEEEEEETTEEEEEEEECC-C-SSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCCCEEEEEeCC------------CcEEEEEecCCCEEEEEEecC-C-CCceEEEEECCCCCEEEEEeCCCe
Confidence 344566666543 347788888888765433211 0 1111222222 4667777776653
No 147
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=91.61 E-value=4.1 Score=38.11 Aligned_cols=156 Identities=10% Similarity=0.023 Sum_probs=81.7
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCce
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEW 165 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 165 (483)
+++||+.+... ..+++||+.+++...+.. .....-.+++.-.++++|+...... .....+++||+.+.+.
T Consensus 55 ~g~l~~~~~~~-----~~i~~~d~~~~~~~~~~~----~~~~~~~~i~~~~dg~l~v~~~~~~-~~~~~i~~~d~~~~~~ 124 (333)
T 2dg1_A 55 QGQLFLLDVFE-----GNIFKINPETKEIKRPFV----SHKANPAAIKIHKDGRLFVCYLGDF-KSTGGIFAATENGDNL 124 (333)
T ss_dssp TSCEEEEETTT-----CEEEEECTTTCCEEEEEE----CSSSSEEEEEECTTSCEEEEECTTS-SSCCEEEEECTTSCSC
T ss_pred CCCEEEEECCC-----CEEEEEeCCCCcEEEEee----CCCCCcceEEECCCCcEEEEeCCCC-CCCceEEEEeCCCCEE
Confidence 56788876532 358999999988877642 1112233444445668888754321 1235699999998877
Q ss_pred EEeccCCCCCCCCcCceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEe-
Q 011542 166 MQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSG- 243 (483)
Q Consensus 166 ~~i~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~- 243 (483)
..+.. .......-..++.. ++++|+.......... ...++.+|+++.+...+.. .. .....++..
T Consensus 125 ~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~------~~~l~~~~~~~~~~~~~~~--~~---~~~~~i~~~~ 191 (333)
T 2dg1_A 125 QDIIE--DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP------LGGVYYVSPDFRTVTPIIQ--NI---SVANGIALST 191 (333)
T ss_dssp EEEEC--SSSSCCCEEEEEECTTSCEEEEECCCBTTBC------CEEEEEECTTSCCEEEEEE--EE---SSEEEEEECT
T ss_pred EEEEc--cCccCCcccceEECCCCCEEEEeccccccCC------CceEEEEeCCCCEEEEeec--CC---CcccceEECC
Confidence 64321 11111111223333 5688875432111100 1345556877766665431 10 112233332
Q ss_pred C-CEEEEEcCCCCCCCCcccceeeCcEEEEEcCC
Q 011542 244 G-HYLLLFGGHGTGGWLSRYDIYYNDTIILDRLS 276 (483)
Q Consensus 244 ~-~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~ 276 (483)
+ ..+|+.... .+.+++||+.+
T Consensus 192 dg~~l~v~~~~------------~~~i~~~d~~~ 213 (333)
T 2dg1_A 192 DEKVLWVTETT------------ANRLHRIALED 213 (333)
T ss_dssp TSSEEEEEEGG------------GTEEEEEEECT
T ss_pred CCCEEEEEeCC------------CCeEEEEEecC
Confidence 3 357775421 24688999853
No 148
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=91.59 E-value=8.3 Score=43.58 Aligned_cols=111 Identities=9% Similarity=-0.025 Sum_probs=60.0
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~y 107 (483)
..++..++.||.++ .+.+||..+.+-...-. .........+..-+++.++.|+.++ .+.++
T Consensus 624 s~~~~~l~s~~~d~-----~i~vw~~~~~~~~~~~~---------~h~~~v~~~~~s~~~~~l~s~~~d~-----~v~vw 684 (1249)
T 3sfz_A 624 SQDGQRIASCGADK-----TLQVFKAETGEKLLDIK---------AHEDEVLCCAFSSDDSYIATCSADK-----KVKIW 684 (1249)
T ss_dssp CTTSSEEEEEETTS-----CEEEEETTTCCEEEEEC---------CCSSCEEEEEECTTSSEEEEEETTS-----EEEEE
T ss_pred CCCCCEEEEEeCCC-----eEEEEECCCCCEEEEec---------cCCCCEEEEEEecCCCEEEEEeCCC-----eEEEE
Confidence 45677778887543 58899998876433211 1111111122222556677776432 48899
Q ss_pred ECCCCeEEEeecCCCCCCCCcccEEEEE-C--CcEEEEEecCCCCcCCccEEEEECCCCceEE
Q 011542 108 DTDIWQWSELTSFGDLPSPRDFAAASAI-G--NRKIVMYGGWDGKKWLSDVYVLDTISLEWMQ 167 (483)
Q Consensus 108 d~~t~~W~~l~~~~~~p~~r~~~~~~~~-~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~ 167 (483)
|..+++-...-. .......++.+ . ++.+++.|+.++ .+.+||+.+.+-..
T Consensus 685 d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~sg~~d~-----~v~vwd~~~~~~~~ 737 (1249)
T 3sfz_A 685 DSATGKLVHTYD-----EHSEQVNCCHFTNKSNHLLLATGSNDF-----FLKLWDLNQKECRN 737 (1249)
T ss_dssp ETTTCCEEEEEE-----CCSSCEEEEEECSSSSCCEEEEEETTS-----CEEEEETTSSSEEE
T ss_pred ECCCCceEEEEc-----CCCCcEEEEEEecCCCceEEEEEeCCC-----eEEEEECCCcchhh
Confidence 998876543321 11111122223 2 335666666543 47889988876544
No 149
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=91.55 E-value=8.5 Score=35.61 Aligned_cols=132 Identities=8% Similarity=0.016 Sum_probs=70.1
Q ss_pred CcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CC-EEEEEccccCCCCCccEEEE
Q 011542 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DC-HMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 30 ~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~-~iyv~GG~~~~~~~~~~~~y 107 (483)
.+.+|+.+..+ +.+.+||+.+++....... +. ....++.. ++ .+|+.+... +.++++
T Consensus 9 ~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~---------~~--~~~~~~~s~dg~~l~~~~~~~-----~~i~~~ 67 (331)
T 3u4y_A 9 SNFGIVVEQHL-----RRISFFSTDTLEILNQITL---------GY--DFVDTAITSDCSNVVVTSDFC-----QTLVQI 67 (331)
T ss_dssp CCEEEEEEGGG-----TEEEEEETTTCCEEEEEEC---------CC--CEEEEEECSSSCEEEEEESTT-----CEEEEE
T ss_pred CCEEEEEecCC-----CeEEEEeCcccceeeeEEc---------cC--CcceEEEcCCCCEEEEEeCCC-----CeEEEE
Confidence 35677776543 4689999999988665422 11 11123332 33 577765422 268999
Q ss_pred ECCCCeE--EEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEE
Q 011542 108 DTDIWQW--SELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTAT 184 (483)
Q Consensus 108 d~~t~~W--~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~ 184 (483)
|+.+++- ..+.. + ..+ .++++...++ .+| .+...+ ....+++||+.+++-......+. ..+.++
T Consensus 68 d~~~~~~~~~~~~~-~--~~~--~~~~~~s~dg~~l~-~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~-----~~~~~~ 134 (331)
T 3u4y_A 68 ETQLEPPKVVAIQE-G--QSS--MADVDITPDDQFAV-TVTGLN--HPFNMQSYSFLKNKFISTIPIPY-----DAVGIA 134 (331)
T ss_dssp ECSSSSCEEEEEEE-C--SSC--CCCEEECTTSSEEE-ECCCSS--SSCEEEEEETTTTEEEEEEECCT-----TEEEEE
T ss_pred ECCCCceeEEeccc-C--CCC--ccceEECCCCCEEE-EecCCC--CcccEEEEECCCCCeEEEEECCC-----CccceE
Confidence 9988774 22322 1 111 2223333343 566 432211 12379999999887655432111 114444
Q ss_pred Ee-CC-EEEEEcc
Q 011542 185 MV-EK-RLLIYGG 195 (483)
Q Consensus 185 ~~-~~-~lyv~GG 195 (483)
.. ++ .+|+.+.
T Consensus 135 ~spdg~~l~~~~~ 147 (331)
T 3u4y_A 135 ISPNGNGLILIDR 147 (331)
T ss_dssp ECTTSSCEEEEEE
T ss_pred ECCCCCEEEEEec
Confidence 44 33 5777654
No 150
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=91.25 E-value=4.4 Score=37.62 Aligned_cols=167 Identities=11% Similarity=-0.053 Sum_probs=79.3
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEE----ccccC------
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIF----GGRFG------ 97 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~----GG~~~------ 97 (483)
..++++|+.... ...+.+||+. ++...+..... ..+..+....++.-+++||+. |-...
T Consensus 94 d~dG~l~v~~~~-----~~~v~~~~~~-g~~~~~~~~~~-----~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~ 162 (305)
T 3dr2_A 94 DAQQRLVHCEHG-----RRAITRSDAD-GQAHLLVGRYA-----GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPA 162 (305)
T ss_dssp CTTSCEEEEETT-----TTEEEEECTT-SCEEEEECEET-----TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCC
T ss_pred CCCCCEEEEECC-----CCEEEEECCC-CCEEEEEeccC-----CCccCCCCCEEECCCCCEEEeCcCCCcccccccccc
Confidence 345566654321 1347788876 66665542211 001111122222236788885 43211
Q ss_pred --CCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCceEEeccCCCC
Q 011542 98 --SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSV 174 (483)
Q Consensus 98 --~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~ 174 (483)
......+++||+.+++...+. .+.. ...++...++ .+|+..........+.+++||+..+.......-...
T Consensus 163 ~~~~~~~~v~~~d~~~g~~~~~~---~~~~---p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~ 236 (305)
T 3dr2_A 163 DPELAHHSVYRLPPDGSPLQRMA---DLDH---PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV 236 (305)
T ss_dssp CCSSSCEEEEEECSSSCCCEEEE---EESS---EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC
T ss_pred ccccCCCeEEEEcCCCCcEEEEe---cCCC---CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC
Confidence 111356999999888777654 1111 1233444444 577765322111235789999876543221100011
Q ss_pred CCCCcCceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEec
Q 011542 175 PPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLK 226 (483)
Q Consensus 175 p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~ 226 (483)
+.. .-..++.. +++||+..+ +.+.+||++......+.
T Consensus 237 ~~~-~pdgi~~d~~G~lwv~~~--------------~gv~~~~~~g~~~~~~~ 274 (305)
T 3dr2_A 237 PDG-LPDGFCVDRGGWLWSSSG--------------TGVCVFDSDGQLLGHIP 274 (305)
T ss_dssp SSS-CCCSEEECTTSCEEECCS--------------SEEEEECTTSCEEEEEE
T ss_pred CCC-CCCeEEECCCCCEEEecC--------------CcEEEECCCCCEEEEEE
Confidence 111 11223332 567887542 23566788766655555
No 151
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=90.91 E-value=13 Score=36.50 Aligned_cols=67 Identities=10% Similarity=0.058 Sum_probs=37.8
Q ss_pred CEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceE
Q 011542 87 CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWM 166 (483)
Q Consensus 87 ~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 166 (483)
+++++.|+.++ .+.+||+.+.+-......+ ....-.+++.. ++.+++.|+.+ ..+.+||+.+++-.
T Consensus 210 ~~~l~s~~~d~-----~i~vwd~~~~~~~~~~~~~---h~~~v~~~~~s-d~~~l~s~~~d-----~~v~vwd~~~~~~~ 275 (450)
T 2vdu_B 210 HQFIITSDRDE-----HIKISHYPQCFIVDKWLFG---HKHFVSSICCG-KDYLLLSAGGD-----DKIFAWDWKTGKNL 275 (450)
T ss_dssp CEEEEEEETTS-----CEEEEEESCTTCEEEECCC---CSSCEEEEEEC-STTEEEEEESS-----SEEEEEETTTCCEE
T ss_pred CcEEEEEcCCC-----cEEEEECCCCceeeeeecC---CCCceEEEEEC-CCCEEEEEeCC-----CeEEEEECCCCcEe
Confidence 67777777543 4788888776543321101 11111222333 55677777743 35888999887754
Q ss_pred E
Q 011542 167 Q 167 (483)
Q Consensus 167 ~ 167 (483)
.
T Consensus 276 ~ 276 (450)
T 2vdu_B 276 S 276 (450)
T ss_dssp E
T ss_pred e
Confidence 3
No 152
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=90.90 E-value=5.2 Score=37.31 Aligned_cols=114 Identities=10% Similarity=0.022 Sum_probs=59.7
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE---CCEEEEEccccCCCCCccEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI---DCHMFIFGGRFGSRRLGDFW 105 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~---~~~iyv~GG~~~~~~~~~~~ 105 (483)
.++..++.|+.++ .+.+||+.++....+.... ..... -.+++.. ++.+++.|+.++ .+.
T Consensus 23 ~~g~~lasgs~D~-----~v~lwd~~~~~~~~~~~l~-------gH~~~-V~~v~~~~~~~~~~l~s~s~D~-----~v~ 84 (316)
T 3bg1_A 23 YYGTRLATCSSDR-----SVKIFDVRNGGQILIADLR-------GHEGP-VWQVAWAHPMYGNILASCSYDR-----KVI 84 (316)
T ss_dssp GGGCEEEEEETTT-----EEEEEEEETTEEEEEEEEE-------CCSSC-EEEEEECCGGGSSCEEEEETTS-----CEE
T ss_pred CCCCEEEEEeCCC-----eEEEEEecCCCcEEEEEEc-------CCCcc-EEEEEeCCCCCCCEEEEEECCC-----EEE
Confidence 4567888887643 4778888776543333221 11111 1222222 256677776553 377
Q ss_pred EEECCCCeEEEeecCCCCCCCC-cccEEEEECC--cEEEEEecCCCCcCCccEEEEECCCC-ceEEe
Q 011542 106 VLDTDIWQWSELTSFGDLPSPR-DFAAASAIGN--RKIVMYGGWDGKKWLSDVYVLDTISL-EWMQL 168 (483)
Q Consensus 106 ~yd~~t~~W~~l~~~~~~p~~r-~~~~~~~~~~--~~iyv~GG~~~~~~~~~v~~yd~~t~-~W~~i 168 (483)
++|+.+..|..+.. +.... .-.+++...+ +.+++.|+.++ .+.++|..+. .|...
T Consensus 85 iWd~~~~~~~~~~~---~~~h~~~V~~v~~~p~~~g~~lasgs~D~-----~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 85 IWREENGTWEKSHE---HAGHDSSVNSVCWAPHDYGLILACGSSDG-----AISLLTYTGEGQWEVK 143 (316)
T ss_dssp EECCSSSCCCEEEE---ECCCSSCCCEEEECCTTTCSCEEEECSSS-----CEEEEEECSSSCEEEC
T ss_pred EEECCCCcceEEEE---ccCCCCceEEEEECCCCCCcEEEEEcCCC-----CEEEEecCCCCCccee
Confidence 88988877655432 11111 1122222222 46777777644 3667777665 57543
No 153
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=90.58 E-value=6.7 Score=41.21 Aligned_cols=82 Identities=10% Similarity=-0.093 Sum_probs=44.2
Q ss_pred EEEECCcEEEEEcccCCCc----cccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCC
Q 011542 25 AVNIGKSKVVVFGGLVDKR----FLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRR 100 (483)
Q Consensus 25 ~~~~~~~~l~v~GG~~~~~----~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~ 100 (483)
.....|++.++++..+... ....++++|..+++-..+..... ...+..+....-+++.++++..
T Consensus 66 ~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-------~~~~~~~~~~SPdG~~la~~~~----- 133 (723)
T 1xfd_A 66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV-------SNAKLQYAGWGPKGQQLIFIFE----- 133 (723)
T ss_dssp EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC-------CSCCCSBCCBCSSTTCEEEEET-----
T ss_pred EEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcc-------ccccccccEECCCCCEEEEEEC-----
Confidence 3445667767776543221 23689999999887655542211 1111112222224444444432
Q ss_pred CccEEEEECCCCeEEEeec
Q 011542 101 LGDFWVLDTDIWQWSELTS 119 (483)
Q Consensus 101 ~~~~~~yd~~t~~W~~l~~ 119 (483)
.+++++|..++.-.++..
T Consensus 134 -~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 134 -NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp -TEEEEESSSSSCCEEEEC
T ss_pred -CeEEEEECCCCceEEEec
Confidence 368888888777666653
No 154
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=90.53 E-value=13 Score=35.93 Aligned_cols=215 Identities=13% Similarity=0.077 Sum_probs=109.8
Q ss_pred eEEEEcCC--CcEEeeeecCCCCCCCCCCCCcceeEEEEE---CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCC
Q 011542 48 VVVYDIDN--KLWFQPECTGNGSNGQVGPGPRAFHIAVAI---DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGD 122 (483)
Q Consensus 48 ~~~yd~~~--~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~ 122 (483)
++.++... .+|..+... +....-++++.. .+.||+.+.... .-..+++.+-...+|+++.....
T Consensus 33 l~~~~~~~~g~~W~~~~~~---------~~~~~v~~i~~dp~~~~~l~~g~~~g~--~g~gl~~s~D~G~tW~~~~~~~~ 101 (394)
T 3b7f_A 33 AWFLASDPARRTWELRGPV---------FLGHTIHHIVQDPREPERMLMAARTGH--LGPTVFRSDDGGGNWTEATRPPA 101 (394)
T ss_dssp EEEEEECTTSCSEEEEEEE---------STTSEEEEEEECSSSTTCEEEEEEC----CCEEEEEESSTTSCCEECSBCCC
T ss_pred eEEEECCCCCCCceECCcc---------CCCCceEEEEECCCCCCeEEEEecCCC--CCccEEEeCCCCCCceECCcccc
Confidence 67787765 689986421 122234555554 467887653210 01147777667789998864211
Q ss_pred CCCC--C-------cccEEEEE--C-CcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCC--------------
Q 011542 123 LPSP--R-------DFAAASAI--G-NRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPP-------------- 176 (483)
Q Consensus 123 ~p~~--r-------~~~~~~~~--~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~-------------- 176 (483)
.+.. + ...++++. . .+.||+.+. ...+++.+-...+|+.+......|.
T Consensus 102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~ 175 (394)
T 3b7f_A 102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPD 175 (394)
T ss_dssp CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CC
T ss_pred CCCcccccccccccceeEEEeCCCCCCCEEEEEec------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCC
Confidence 2211 1 11122222 1 457777542 2358888878889998852111121
Q ss_pred CCcCceEEEe---CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCC---CCCCC-----CeeeEEEEeC-
Q 011542 177 PRCGHTATMV---EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPG---QAPSS-----RCGHTITSGG- 244 (483)
Q Consensus 177 ~r~~~~~~~~---~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g---~~p~~-----r~~~~~~~~~- 244 (483)
...-++++.. .+.||+.... ..+++.+-...+|+.+.... .+|.+ ...+++++..
T Consensus 176 ~~~i~~i~~d~~~~~~l~vg~~~-------------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~ 242 (394)
T 3b7f_A 176 GPKMHSILVDPRDPKHLYIGMSS-------------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPA 242 (394)
T ss_dssp CCEEEEEEECTTCTTCEEEEEET-------------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSS
T ss_pred CCceeEEEECCCCCCEEEEEECC-------------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCC
Confidence 1112334333 2577775432 11233355678999875310 11211 2234454432
Q ss_pred --CEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCC--CCcceEEEEE---CCEEEEEc
Q 011542 245 --HYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPP--ARAYHSMTCL---GSLYLLFG 308 (483)
Q Consensus 245 --~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~--~R~~~~~~~~---~~~i~v~G 308 (483)
+.||+... ..+++.+-...+|+.+... .|. ..+..+++.. .+.||+..
T Consensus 243 ~~~~l~vg~~--------------~gl~~s~D~G~tW~~~~~~--l~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 243 APDILYQQNH--------------CGIYRMDRREGVWKRIGDA--MPREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp STTEEEEEET--------------TEEEEEETTTTEEECGGGG--SCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred CCCEEEEEcC--------------CeEEEeCCCCCcceECCCC--CCCCCccceEEEEECCCCCCEEEEEe
Confidence 56766321 2378888888999998642 121 1333444332 36677763
No 155
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=90.53 E-value=11 Score=35.11 Aligned_cols=211 Identities=9% Similarity=-0.089 Sum_probs=104.0
Q ss_pred eeEEEEC-CcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccC--
Q 011542 23 HSAVNIG-KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFG-- 97 (483)
Q Consensus 23 h~~~~~~-~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~-- 97 (483)
+.+++.. ++.|||.... ..+.+||+.++..+.+..... ..+. ..-..+++. +++||+.-....
T Consensus 83 ~gi~~~~~~g~l~v~d~~------~~i~~~d~~~g~~~~~~~~~~-----~~~~-~~p~~i~~d~~~G~l~v~d~~~~~~ 150 (322)
T 2fp8_A 83 YDISYNLQNNQLYIVDCY------YHLSVVGSEGGHATQLATSVD-----GVPF-KWLYAVTVDQRTGIVYFTDVSTLYD 150 (322)
T ss_dssp EEEEEETTTTEEEEEETT------TEEEEECTTCEECEEEESEET-----TEEC-SCEEEEEECTTTCCEEEEESCSSCC
T ss_pred ceEEEcCCCCcEEEEECC------CCEEEEeCCCCEEEEecccCC-----CCcc-cccceEEEecCCCEEEEECCccccc
Confidence 3444553 6789987432 237889988776655542211 0111 122334444 468888632110
Q ss_pred ----------CCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCC---C
Q 011542 98 ----------SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTIS---L 163 (483)
Q Consensus 98 ----------~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t---~ 163 (483)
......+++||+.+.+...+.. .+. .-..++.-.++ .+||.-. ..+.+++|++.+ .
T Consensus 151 ~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~~---~p~gia~~~dg~~lyv~d~-----~~~~I~~~~~~~~~~~ 220 (322)
T 2fp8_A 151 DRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK--ELH---VPGGAEVSADSSFVLVAEF-----LSHQIVKYWLEGPKKG 220 (322)
T ss_dssp TTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE--EES---CCCEEEECTTSSEEEEEEG-----GGTEEEEEESSSTTTT
T ss_pred ccccceehcccCCCceEEEEeCCCCEEEEecc--CCc---cCcceEECCCCCEEEEEeC-----CCCeEEEEECCCCcCC
Confidence 0122469999998887655432 111 11233444443 5887632 135689999875 3
Q ss_pred ceEEeccCCCCCCCCcCceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE
Q 011542 164 EWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS 242 (483)
Q Consensus 164 ~W~~i~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~ 242 (483)
+.+.+. ..+.| ..++.. +++|||........ . .....-..+.+||++......+..+...+ .....+++.
T Consensus 221 ~~~~~~---~~~gP---~gi~~d~~G~l~va~~~~~~~-~-~~~~~~~~v~~~d~~G~~~~~~~~~~g~~-~~~~~~~~~ 291 (322)
T 2fp8_A 221 TAEVLV---KIPNP---GNIKRNADGHFWVSSSEELDG-N-MHGRVDPKGIKFDEFGNILEVIPLPPPFA-GEHFEQIQE 291 (322)
T ss_dssp CEEEEE---ECSSE---EEEEECTTSCEEEEEEEETTS-S-TTSCEEEEEEEECTTSCEEEEEECCTTTT-TSCCCEEEE
T ss_pred ccceEE---eCCCC---CCeEECCCCCEEEEecCcccc-c-ccCCCccEEEEECCCCCEEEEEECCCCCc-cccceEEEE
Confidence 444433 12211 223333 56888875421000 0 00000134667788755555554321111 122223445
Q ss_pred eCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCC
Q 011542 243 GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLS 276 (483)
Q Consensus 243 ~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~ 276 (483)
.++.|||.+.. .+.|.+|++..
T Consensus 292 ~~g~L~v~~~~------------~~~i~~~~~~~ 313 (322)
T 2fp8_A 292 HDGLLYIGTLF------------HGSVGILVYDK 313 (322)
T ss_dssp ETTEEEEECSS------------CSEEEEEEC--
T ss_pred eCCEEEEeecC------------CCceEEEeccc
Confidence 68899986432 25588888653
No 156
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=90.51 E-value=10 Score=34.75 Aligned_cols=213 Identities=9% Similarity=-0.023 Sum_probs=104.4
Q ss_pred cEEEEEcccCCCccccceEEEEcCCCc--EEeeeecCCCCCCCCCCC-CcceeEEEEECCEEEEEccccCCCCCccEEEE
Q 011542 31 SKVVVFGGLVDKRFLSDVVVYDIDNKL--WFQPECTGNGSNGQVGPG-PRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 31 ~~l~v~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~p~-~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~y 107 (483)
+.+++.|..+ +.+.++|+++++ |+.-. +. ....+..+.-++++++.+. +.+..|
T Consensus 5 ~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~-----------~~~~~~~~~~~~pdG~ilvs~~-------~~V~~~ 61 (276)
T 3no2_A 5 QHLLVGGSGW-----NKIAIINKDTKEIVWEYPL-----------EKGWECNSVAATKAGEILFSYS-------KGAKMI 61 (276)
T ss_dssp CEEEEECTTC-----SEEEEEETTTTEEEEEEEC-----------CTTCCCCEEEECTTSCEEEECB-------SEEEEE
T ss_pred CcEEEeeCCC-----CEEEEEECCCCeEEEEeCC-----------CccCCCcCeEECCCCCEEEeCC-------CCEEEE
Confidence 4677776543 457889987764 66532 11 1222333334678887321 348899
Q ss_pred ECCCC-eEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCC-ceEEeccCCCCCC--CCcCceE
Q 011542 108 DTDIW-QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL-EWMQLPVTGSVPP--PRCGHTA 183 (483)
Q Consensus 108 d~~t~-~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~-~W~~i~~~~~~p~--~r~~~~~ 183 (483)
|+... .|+--. +.....+++....++.+++..... ...++.+|+.-. .|+... .+..+. .......
T Consensus 62 d~~G~~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~~----~~~v~~vd~~Gk~l~~~~~-~~~~~~~~~~~~~v~ 131 (276)
T 3no2_A 62 TRDGRELWNIAA-----PAGCEMQTARILPDGNALVAWCGH----PSTILEVNMKGEVLSKTEF-ETGIERPHAQFRQIN 131 (276)
T ss_dssp CTTSCEEEEEEC-----CTTCEEEEEEECTTSCEEEEEEST----TEEEEEECTTSCEEEEEEE-CCSCSSGGGSCSCCE
T ss_pred CCCCCEEEEEcC-----CCCccccccEECCCCCEEEEecCC----CCEEEEEeCCCCEEEEEec-cCCCCcccccccCce
Confidence 99322 365332 222223455556677777765421 235778887433 244321 111111 1111222
Q ss_pred EEeCCEEEEEccCCCCCCcccceecccccccccCCCC-CeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCccc
Q 011542 184 TMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETP-GWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRY 262 (483)
Q Consensus 184 ~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~-~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~ 262 (483)
...++.+++..... ..+..||++.. .|+.-. . ..| ..+....++.+++.+...
T Consensus 132 ~~~~G~~lv~~~~~------------~~v~~~d~~G~~~w~~~~-~-~~~----~~~~~~~~g~~~v~~~~~-------- 185 (276)
T 3no2_A 132 KNKKGNYLVPLFAT------------SEVREIAPNGQLLNSVKL-S-GTP----FSSAFLDNGDCLVACGDA-------- 185 (276)
T ss_dssp ECTTSCEEEEETTT------------TEEEEECTTSCEEEEEEC-S-SCC----CEEEECTTSCEEEECBTT--------
T ss_pred ECCCCCEEEEecCC------------CEEEEECCCCCEEEEEEC-C-CCc----cceeEcCCCCEEEEeCCC--------
Confidence 23355555543311 34556677632 355332 1 111 113334566777766532
Q ss_pred ceeeCcEEEEEcCCC--ceEEccCCCCCCCCCc--ceEEEEE-CCEEEEEc
Q 011542 263 DIYYNDTIILDRLSA--QWKRLPIGNEPPPARA--YHSMTCL-GSLYLLFG 308 (483)
Q Consensus 263 ~~~~~~v~~yd~~~~--~W~~v~~~~~~p~~R~--~~~~~~~-~~~i~v~G 308 (483)
+.+..+|+.+. .|+.-... .+..|. -.++... ++.+||..
T Consensus 186 ----~~v~~~d~~tG~~~w~~~~~~--~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 186 ----HCFVQLNLESNRIVRRVNAND--IEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp ----SEEEEECTTTCCEEEEEEGGG--SBSCCCSEEEEEEECTTSCEEEEE
T ss_pred ----CeEEEEeCcCCcEEEEecCCC--CCCccccccccceEcCCCCEEEEe
Confidence 35899998854 46553221 111222 2233333 67888876
No 157
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=90.22 E-value=10 Score=34.30 Aligned_cols=179 Identities=8% Similarity=-0.022 Sum_probs=91.4
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~y 107 (483)
.++.+|+.+... ...+.+||+....-..+.. +....-+.+++. ++++|+....+ +.+.+|
T Consensus 87 ~~g~l~v~~~~~----~~~i~~~d~~g~~~~~~~~----------~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~ 147 (286)
T 1q7f_A 87 NSGDIIVTERSP----THQIQIYNQYGQFVRKFGA----------TILQHPRGVTVDNKGRIIVVECKV-----MRVIIF 147 (286)
T ss_dssp TTTEEEEEECGG----GCEEEEECTTSCEEEEECT----------TTCSCEEEEEECTTSCEEEEETTT-----TEEEEE
T ss_pred CCCeEEEEcCCC----CCEEEEECCCCcEEEEecC----------ccCCCceEEEEeCCCCEEEEECCC-----CEEEEE
Confidence 567888876421 2458888865443333321 111112334443 56788875322 358899
Q ss_pred ECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe-
Q 011542 108 DTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV- 186 (483)
Q Consensus 108 d~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~- 186 (483)
|+.......+...+ ....-.+++.-.++.+|+.... .+.+.+||+.......+...+....+ ..++..
T Consensus 148 ~~~g~~~~~~~~~~---~~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~g~~~~p---~~i~~d~ 216 (286)
T 1q7f_A 148 DQNGNVLHKFGCSK---HLEFPNGVVVNDKQEIFISDNR-----AHCVKVFNYEGQYLRQIGGEGITNYP---IGVGINS 216 (286)
T ss_dssp CTTSCEEEEEECTT---TCSSEEEEEECSSSEEEEEEGG-----GTEEEEEETTCCEEEEESCTTTSCSE---EEEEECT
T ss_pred cCCCCEEEEeCCCC---ccCCcEEEEECCCCCEEEEECC-----CCEEEEEcCCCCEEEEEccCCccCCC---cEEEECC
Confidence 98766555544211 1112234444456789987642 35689999876555555422211111 233333
Q ss_pred CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEc
Q 011542 187 EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFG 251 (483)
Q Consensus 187 ~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~G 251 (483)
++++||...... ..+.+||++...-..+... .+.. ...++++ -++.+|+..
T Consensus 217 ~G~l~v~~~~~~-----------~~i~~~~~~g~~~~~~~~~--~~~~-~~~~i~~~~~g~l~vs~ 268 (286)
T 1q7f_A 217 NGEILIADNHNN-----------FNLTIFTQDGQLISALESK--VKHA-QCFDVALMDDGSVVLAS 268 (286)
T ss_dssp TCCEEEEECSSS-----------CEEEEECTTSCEEEEEEES--SCCS-CEEEEEEETTTEEEEEE
T ss_pred CCCEEEEeCCCC-----------EEEEEECCCCCEEEEEccc--CCCC-cceeEEECCCCcEEEEC
Confidence 568888764321 1455677665544444321 1111 1223443 467888874
No 158
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=90.18 E-value=11 Score=34.71 Aligned_cols=123 Identities=9% Similarity=-0.167 Sum_probs=63.8
Q ss_pred eEEEECCcE-EEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCC
Q 011542 24 SAVNIGKSK-VVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRL 101 (483)
Q Consensus 24 ~~~~~~~~~-l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~ 101 (483)
..+...++. ||+.+-.+ +.+++|++ ++....+.. +... -+..+.. ++++|+.... .
T Consensus 49 gp~~~~~g~~l~~~d~~~-----~~i~~~~~-~g~~~~~~~----------~~~~-~~gl~~d~dG~l~v~~~~-----~ 106 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLVG-----RRVLGWRE-DGTVDVLLD----------ATAF-TNGNAVDAQQRLVHCEHG-----R 106 (305)
T ss_dssp EEEEEGGGTEEEEEETTT-----TEEEEEET-TSCEEEEEE----------SCSC-EEEEEECTTSCEEEEETT-----T
T ss_pred CCeEeCCCCEEEEEECCC-----CEEEEEeC-CCCEEEEeC----------CCCc-cceeeECCCCCEEEEECC-----C
Confidence 334444444 66655322 35888888 455444432 1111 2233333 5678776321 1
Q ss_pred ccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEE----ecCCC--------CcCCccEEEEECCCCceEEec
Q 011542 102 GDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMY----GGWDG--------KKWLSDVYVLDTISLEWMQLP 169 (483)
Q Consensus 102 ~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~----GG~~~--------~~~~~~v~~yd~~t~~W~~i~ 169 (483)
..+.+||+. ++...+...........-..+++-.++.||+. |-... ......+++||+.+++.+.+.
T Consensus 107 ~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 185 (305)
T 3dr2_A 107 RAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA 185 (305)
T ss_dssp TEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE
T ss_pred CEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe
Confidence 358889986 66665542101101111233455567788885 43211 112357999999988888764
No 159
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=90.18 E-value=14 Score=35.60 Aligned_cols=110 Identities=15% Similarity=0.073 Sum_probs=61.3
Q ss_pred EECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEE
Q 011542 27 NIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFW 105 (483)
Q Consensus 27 ~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~ 105 (483)
...+++.++.|+.++ .+.+||..+.+-...-. .. ...-.+++.. ++..++.|+.++ .+.
T Consensus 131 ~s~dg~~l~s~~~d~-----~i~iwd~~~~~~~~~~~---------~h-~~~v~~~~~~p~~~~l~s~s~d~-----~v~ 190 (393)
T 1erj_A 131 FSPDGKFLATGAEDR-----LIRIWDIENRKIVMILQ---------GH-EQDIYSLDYFPSGDKLVSGSGDR-----TVR 190 (393)
T ss_dssp ECTTSSEEEEEETTS-----CEEEEETTTTEEEEEEC---------CC-SSCEEEEEECTTSSEEEEEETTS-----EEE
T ss_pred ECCCCCEEEEEcCCC-----eEEEEECCCCcEEEEEc---------cC-CCCEEEEEEcCCCCEEEEecCCC-----cEE
Confidence 345677788887643 58889998876433221 11 1112223322 455566666442 478
Q ss_pred EEECCCCeEEEeecCCCCCCCCcccEEEEEC-CcEEEEEecCCCCcCCccEEEEECCCCceE
Q 011542 106 VLDTDIWQWSELTSFGDLPSPRDFAAASAIG-NRKIVMYGGWDGKKWLSDVYVLDTISLEWM 166 (483)
Q Consensus 106 ~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 166 (483)
++|+.+++-...-. .. ....+++... ++.+++.|+.++ .+.+||..+.+-.
T Consensus 191 iwd~~~~~~~~~~~---~~--~~v~~~~~~~~~~~~l~~~s~d~-----~v~iwd~~~~~~~ 242 (393)
T 1erj_A 191 IWDLRTGQCSLTLS---IE--DGVTTVAVSPGDGKYIAAGSLDR-----AVRVWDSETGFLV 242 (393)
T ss_dssp EEETTTTEEEEEEE---CS--SCEEEEEECSTTCCEEEEEETTS-----CEEEEETTTCCEE
T ss_pred EEECCCCeeEEEEE---cC--CCcEEEEEECCCCCEEEEEcCCC-----cEEEEECCCCcEE
Confidence 88998876544321 11 1112222322 567888887654 4788898877644
No 160
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=90.16 E-value=11 Score=36.86 Aligned_cols=63 Identities=6% Similarity=-0.128 Sum_probs=31.9
Q ss_pred EEEEccccCCCCCccEEEEECCCC---eEEE--eecCCCCCCCCcccEEEEEC-CcEEEEEecCCCCcCCccEEEEECCC
Q 011542 89 MFIFGGRFGSRRLGDFWVLDTDIW---QWSE--LTSFGDLPSPRDFAAASAIG-NRKIVMYGGWDGKKWLSDVYVLDTIS 162 (483)
Q Consensus 89 iyv~GG~~~~~~~~~~~~yd~~t~---~W~~--l~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t 162 (483)
+++.|+.++ .+.++|+.+. .+.. ... .......-.+++... ++.+++.|+.+ ..+.+||+.+
T Consensus 196 ~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~--~~~h~~~v~~v~~~p~~~~~l~s~~~d-----g~i~i~d~~~ 263 (430)
T 2xyi_A 196 YLLSASDDH-----TICLWDINATPKEHRVIDAKNI--FTGHTAVVEDVAWHLLHESLFGSVADD-----QKLMIWDTRN 263 (430)
T ss_dssp EEEEECTTS-----CEEEEETTSCCBGGGEEECSEE--ECCCSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTC
T ss_pred eEEEEeCCC-----eEEEEeCCCCCCCCceecccee--ecCCCCCEeeeEEeCCCCCEEEEEeCC-----CeEEEEECCC
Confidence 677776543 4788888762 1211 110 001111122233322 44677777643 4588899886
Q ss_pred C
Q 011542 163 L 163 (483)
Q Consensus 163 ~ 163 (483)
.
T Consensus 264 ~ 264 (430)
T 2xyi_A 264 N 264 (430)
T ss_dssp S
T ss_pred C
Confidence 5
No 161
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=90.00 E-value=10 Score=35.99 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=17.8
Q ss_pred ECCcEEEEEecCCCCcCCccEEEEECCCCceE
Q 011542 135 IGNRKIVMYGGWDGKKWLSDVYVLDTISLEWM 166 (483)
Q Consensus 135 ~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 166 (483)
..++..++.|+.++ .+.+||+.+.+-.
T Consensus 254 ~~~~~~l~~~~~dg-----~i~vwd~~~~~~~ 280 (408)
T 4a11_B 254 TSDGLHLLTVGTDN-----RMRLWNSSNGENT 280 (408)
T ss_dssp CTTSSEEEEEETTS-----CEEEEETTTCCBC
T ss_pred cCCCCEEEEecCCC-----eEEEEECCCCccc
Confidence 34556777777543 4888998876543
No 162
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=89.69 E-value=6.3 Score=37.01 Aligned_cols=72 Identities=4% Similarity=-0.045 Sum_probs=38.2
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCC--CcEEeeeecCCCCCCCCCCCCcceeEEEE-ECCEEEEEccccCCCCCccEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDN--KLWFQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSRRLGDFW 105 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~~iyv~GG~~~~~~~~~~~ 105 (483)
.++..++.|+.++ .+.++|... ..+..+.... ..... -.+++. -++.+++.|+.++ .+.
T Consensus 117 p~g~~las~s~D~-----~v~iwd~~~~~~~~~~~~~~~-------~h~~~-v~~v~~~p~~~~l~s~s~D~-----~i~ 178 (330)
T 2hes_X 117 NDGYYLATCSRDK-----SVWIWETDESGEEYECISVLQ-------EHSQD-VKHVIWHPSEALLASSSYDD-----TVR 178 (330)
T ss_dssp TTSCEEEEEETTS-----CEEEEECCTTCCCCEEEEEEC-------CCSSC-EEEEEECSSSSEEEEEETTS-----CEE
T ss_pred CCCCEEEEEeCCC-----EEEEEeccCCCCCeEEEEEec-------cCCCc-eEEEEECCCCCEEEEEcCCC-----eEE
Confidence 4566677776543 477888742 3454443321 01111 112222 2556777777654 366
Q ss_pred EEECCCCeEEEee
Q 011542 106 VLDTDIWQWSELT 118 (483)
Q Consensus 106 ~yd~~t~~W~~l~ 118 (483)
++|..+..|..+.
T Consensus 179 iW~~~~~~~~~~~ 191 (330)
T 2hes_X 179 IWKDYDDDWECVA 191 (330)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEECCCCCeeEEE
Confidence 7787777776654
No 163
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=89.58 E-value=15 Score=35.11 Aligned_cols=68 Identities=12% Similarity=0.007 Sum_probs=37.7
Q ss_pred CEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCC-----CCcccEEEEECCc-EEEEEecCCCCcCCccEEEEEC
Q 011542 87 CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPS-----PRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDT 160 (483)
Q Consensus 87 ~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~-----~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~ 160 (483)
+.+++.|+.++ .+.+||+.+.+-...-. .+. ...-.+++...++ .+++.|+.++. ...+.+||+
T Consensus 178 ~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~ 247 (416)
T 2pm9_A 178 AHVFASAGSSN-----FASIWDLKAKKEVIHLS---YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDL 247 (416)
T ss_dssp TTEEEEESSSS-----CEEEEETTTTEEEEEEC---CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEET
T ss_pred CcEEEEEcCCC-----CEEEEECCCCCcceEEe---ccccccccCCceEEEEECCCCCCEEEEEECCCC--CceEEEEeC
Confidence 56777776543 48899998876544332 111 1122233333333 57777765431 125778888
Q ss_pred CCCc
Q 011542 161 ISLE 164 (483)
Q Consensus 161 ~t~~ 164 (483)
.+..
T Consensus 248 ~~~~ 251 (416)
T 2pm9_A 248 RNAN 251 (416)
T ss_dssp TSTT
T ss_pred CCCC
Confidence 7753
No 164
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=89.57 E-value=10 Score=36.45 Aligned_cols=111 Identities=15% Similarity=0.015 Sum_probs=58.7
Q ss_pred EEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEEEECC
Q 011542 32 KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWVLDTD 110 (483)
Q Consensus 32 ~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~ 110 (483)
.+++.|+.++ .+.+||..+.+....-... .....-.+++.. ++.+++.|+.++ .+.+||+.
T Consensus 145 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~ 206 (402)
T 2aq5_A 145 NVLLSAGCDN-----VILVWDVGTGAAVLTLGPD--------VHPDTIYSVDWSRDGALICTSCRDK-----RVRVIEPR 206 (402)
T ss_dssp TEEEEEETTS-----CEEEEETTTTEEEEEECTT--------TCCSCEEEEEECTTSSCEEEEETTS-----EEEEEETT
T ss_pred CEEEEEcCCC-----EEEEEECCCCCccEEEecC--------CCCCceEEEEECCCCCEEEEEecCC-----cEEEEeCC
Confidence 4677776543 4889999887654322000 111112223332 556667776442 58899998
Q ss_pred CCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 111 IWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 111 t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
+++-...-.. .........++...++.+++.|.... .-..+.+||+.+.+
T Consensus 207 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~g~~~~--~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 207 KGTVVAEKDR--PHEGTRPVHAVFVSEGKILTTGFSRM--SERQVALWDTKHLE 256 (402)
T ss_dssp TTEEEEEEEC--SSCSSSCCEEEECSTTEEEEEEECTT--CCEEEEEEETTBCS
T ss_pred CCceeeeecc--CCCCCcceEEEEcCCCcEEEEeccCC--CCceEEEEcCcccc
Confidence 8764433210 11111123344445668777773111 23468889987654
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=89.50 E-value=7.9 Score=36.81 Aligned_cols=218 Identities=11% Similarity=0.011 Sum_probs=102.8
Q ss_pred EECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEE
Q 011542 27 NIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWV 106 (483)
Q Consensus 27 ~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~ 106 (483)
...|++.++|....++ ...+|++|+.+.+-..+... +..........-+++.++++... ..+++
T Consensus 43 ~SpDg~~l~~~~~~~g--~~~l~~~d~~~g~~~~lt~~---------~~~~~~~~~~spdg~~l~~~~~~-----~~l~~ 106 (388)
T 3pe7_A 43 FTRDGSKLLFGGAFDG--PWNYYLLDLNTQVATQLTEG---------RGDNTFGGFLSPDDDALFYVKDG-----RNLMR 106 (388)
T ss_dssp BCTTSCEEEEEECTTS--SCEEEEEETTTCEEEECCCS---------SCBCSSSCEECTTSSEEEEEETT-----TEEEE
T ss_pred CCCCCCEEEEEEcCCC--CceEEEEeCCCCceEEeeeC---------CCCCccceEEcCCCCEEEEEeCC-----CeEEE
Confidence 3456666666654222 24699999999888776532 11111112233344434443321 36899
Q ss_pred EECCCCeEEEeecCCCCCCCCcccEEEE-ECCcEEEEEecCC-----------------CCcCCccEEEEECCCCceEEe
Q 011542 107 LDTDIWQWSELTSFGDLPSPRDFAAASA-IGNRKIVMYGGWD-----------------GKKWLSDVYVLDTISLEWMQL 168 (483)
Q Consensus 107 yd~~t~~W~~l~~~~~~p~~r~~~~~~~-~~~~~iyv~GG~~-----------------~~~~~~~v~~yd~~t~~W~~i 168 (483)
+|+.+++-..+.. .|.......... -.+++.++.--.. .......++.+|+.+++-+.+
T Consensus 107 ~d~~~g~~~~~~~---~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 183 (388)
T 3pe7_A 107 VDLATLEENVVYQ---VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI 183 (388)
T ss_dssp EETTTCCEEEEEE---CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE
T ss_pred EECCCCcceeeee---chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe
Confidence 9999887666553 333322212222 2333333311000 011236799999999887766
Q ss_pred ccCCCCCCCCcCceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCC-CeeeEEEEeCCE
Q 011542 169 PVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSS-RCGHTITSGGHY 246 (483)
Q Consensus 169 ~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~-r~~~~~~~~~~~ 246 (483)
.. .+ ....+....- +++.+++.......... ..++.+|+++.....+. ..... ...+.+..-+++
T Consensus 184 ~~---~~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~------~~l~~~d~~~~~~~~l~---~~~~~~~~~~~~~spdg~ 250 (388)
T 3pe7_A 184 LQ---EN-QWLGHPIYRPYDDSTVAFCHEGPHDLVD------ARMWLINEDGTNMRKVK---THAEGESCTHEFWVPDGS 250 (388)
T ss_dssp EE---ES-SCEEEEEEETTEEEEEEEEECSCTTTSS------CSEEEEETTSCCCEESC---CCCTTEEEEEEEECTTSS
T ss_pred ec---CC-ccccccEECCCCCCEEEEEEecCCCCCc------ceEEEEeCCCCceEEee---eCCCCcccccceECCCCC
Confidence 52 11 1122222222 34444443322211111 23444577776666554 21211 111112222343
Q ss_pred -EEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccC
Q 011542 247 -LLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPI 284 (483)
Q Consensus 247 -i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (483)
|+....... . ....++++|+.+.+-+.+..
T Consensus 251 ~l~~~~~~~~-~-------~~~~l~~~d~~~g~~~~l~~ 281 (388)
T 3pe7_A 251 ALVYVSYLKG-S-------PDRFIYSADPETLENRQLTS 281 (388)
T ss_dssp CEEEEEEETT-C-------CCEEEEEECTTTCCEEEEEE
T ss_pred EEEEEecCCC-C-------CcceEEEEecCCCceEEEEc
Confidence 433332111 1 11259999999887666544
No 166
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=89.34 E-value=3.5 Score=44.16 Aligned_cols=96 Identities=9% Similarity=0.053 Sum_probs=53.3
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEE-CC--cEEEEEecCCCCcCCccEEEEECCC
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAI-GN--RKIVMYGGWDGKKWLSDVYVLDTIS 162 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~-~~--~~iyv~GG~~~~~~~~~v~~yd~~t 162 (483)
++..++.||.++ .+.+||..+.++..+.. +......-.++.+ .+ +.+++.|+.++ .+.+||+.+
T Consensus 20 dg~~latg~~dg-----~I~vwd~~~~~~~~~~~---l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg-----~I~vwd~~~ 86 (753)
T 3jro_A 20 YGKRLATCSSDK-----TIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCSYDG-----KVLIWKEEN 86 (753)
T ss_dssp SSCCEEEEETTT-----EEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCTTSCSEEEEEETTS-----CEEEEEEET
T ss_pred CCCeEEEEECCC-----cEEEEecCCCCCcccee---ccCCcCceEEEEecCCCCCCEEEEEeCCC-----eEEEEECCC
Confidence 455666666543 47788887777766653 2222222222333 33 56777887644 488899999
Q ss_pred CceEEeccCCCCCCCCcCc-eEEEe-C--CEEEEEccCC
Q 011542 163 LEWMQLPVTGSVPPPRCGH-TATMV-E--KRLLIYGGRG 197 (483)
Q Consensus 163 ~~W~~i~~~~~~p~~r~~~-~~~~~-~--~~lyv~GG~~ 197 (483)
++|..+. ........- ++... + +.+++.|+..
T Consensus 87 ~~~~~~~---~~~~h~~~V~~v~~sp~~~~~~l~sgs~d 122 (753)
T 3jro_A 87 GRWSQIA---VHAVHSASVNSVQWAPHEYGPLLLVASSD 122 (753)
T ss_dssp TEEEEEE---EECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred Ccccccc---cccCCCCCeEEEEECCCCCCCEEEEEeCC
Confidence 9887665 222222222 22222 2 5677777653
No 167
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=89.26 E-value=15 Score=34.77 Aligned_cols=66 Identities=15% Similarity=0.038 Sum_probs=38.8
Q ss_pred CEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceE
Q 011542 87 CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWM 166 (483)
Q Consensus 87 ~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 166 (483)
+.+++.|+.++ .+.++|+.+.+....-. . ....-.+++...++..++.|+.++ .+.+||+.+.+-.
T Consensus 210 g~~l~sgs~Dg-----~v~~wd~~~~~~~~~~~---~-h~~~v~~v~~~p~~~~l~s~s~D~-----~v~lwd~~~~~~~ 275 (354)
T 2pbi_B 210 GNTFVSGGCDK-----KAMVWDMRSGQCVQAFE---T-HESDVNSVRYYPSGDAFASGSDDA-----TCRLYDLRADREV 275 (354)
T ss_dssp CCEEEEEETTS-----CEEEEETTTCCEEEEEC---C-CSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEE
T ss_pred CCEEEEEeCCC-----eEEEEECCCCcEEEEec---C-CCCCeEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCcEE
Confidence 46777777654 47889998876544321 1 111122333334556778887644 4778898876543
No 168
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=89.26 E-value=19 Score=36.35 Aligned_cols=68 Identities=10% Similarity=-0.043 Sum_probs=34.2
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCce
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEW 165 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 165 (483)
+++.++.|+.++ .+.+||.....-..+.. . . ..-.+++...+++.++.|+.++ .+..||.....-
T Consensus 396 dg~~l~~~~~d~-----~v~~~~~~~~~~~~~~~---~-~-~~v~~~~~s~d~~~l~~~~~d~-----~v~~w~~~~~~~ 460 (577)
T 2ymu_A 396 DGQTIASASDDK-----TVKLWNRNGQLLQTLTG---H-S-SSVWGVAFSPDDQTIASASDDK-----TVKLWNRNGQLL 460 (577)
T ss_dssp TSSCEEEEETTS-----EEEEECTTCCEEEEEEC---C-S-SCEEEEEECTTSSEEEEEETTS-----EEEEEETTSCEE
T ss_pred CCCEEEEEeCCC-----EEEEEeCCCCEEEEecC---C-C-CCeEEEEECCCCCEEEEEcCCC-----EEEEEECCCCEE
Confidence 456666665432 46778865443333331 1 1 1112233334556777776543 467788655444
Q ss_pred EEe
Q 011542 166 MQL 168 (483)
Q Consensus 166 ~~i 168 (483)
..+
T Consensus 461 ~~~ 463 (577)
T 2ymu_A 461 QTL 463 (577)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 169
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=89.10 E-value=14 Score=34.32 Aligned_cols=120 Identities=15% Similarity=0.160 Sum_probs=65.4
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEcccc----------
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRF---------- 96 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~---------- 96 (483)
..|++.++|....++.....+|++|..+++...+... +. ....+.. +++.+++....
T Consensus 67 SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---------~~---~~~~~wspdg~~l~~~~~~~~~~~~~~~~ 134 (347)
T 2gop_A 67 SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA---------KN---IRSLEWNEDSRKLLIVGFKRREDEDFIFE 134 (347)
T ss_dssp CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE---------SE---EEEEEECTTSSEEEEEEECCCC-------
T ss_pred CCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC---------CC---ccceeECCCCCEEEEEEccCCCcCCcEEE
Confidence 3455545554432211234699999998887776532 11 1222222 44433443321
Q ss_pred --------CC----CCCccEEEEECCCCeE-EEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCc---C-CccEEEEE
Q 011542 97 --------GS----RRLGDFWVLDTDIWQW-SELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKK---W-LSDVYVLD 159 (483)
Q Consensus 97 --------~~----~~~~~~~~yd~~t~~W-~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~---~-~~~v~~yd 159 (483)
+. .....++++|+.+++. ..+.. + .....+...++ +++.+...... . ...++.+|
T Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~----~---~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d 206 (347)
T 2gop_A 135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK----P---RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE 206 (347)
T ss_dssp --CCCC---------CEEEEEEEETTTTEEEEEEEE----E---TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE
T ss_pred cccceeecCcccccCccceEEEEECCCCeEEeeecC----C---CcccccCCCCe-EEEEEecccccccccccccEEEeC
Confidence 00 1135689999999887 66653 1 23344445676 66666543321 2 55788888
Q ss_pred CCCCceEEec
Q 011542 160 TISLEWMQLP 169 (483)
Q Consensus 160 ~~t~~W~~i~ 169 (483)
+++++.+.
T Consensus 207 --~~~~~~l~ 214 (347)
T 2gop_A 207 --DGKEEKMF 214 (347)
T ss_dssp --TTEEEEEE
T ss_pred --CCceEEec
Confidence 77887775
No 170
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=88.90 E-value=8.1 Score=36.51 Aligned_cols=117 Identities=8% Similarity=-0.041 Sum_probs=55.6
Q ss_pred EEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCccc-EEEEECCc-EEEEEecCCCCcCCccEEEEEC--CCC
Q 011542 88 HMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFA-AASAIGNR-KIVMYGGWDGKKWLSDVYVLDT--ISL 163 (483)
Q Consensus 88 ~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~-~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~--~t~ 163 (483)
.+|+.+.. .+.+.+||..+++...+......+...... .++.-.++ .||+.. ... .+.+.+|++ .++
T Consensus 224 ~l~v~~~~-----~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~-~~~---~~~i~v~~~~~~~g 294 (361)
T 3scy_A 224 FAYLINEI-----GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASN-RLK---ADGVAIFKVDETNG 294 (361)
T ss_dssp EEEEEETT-----TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEE-CSS---SCEEEEEEECTTTC
T ss_pred EEEEEcCC-----CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEEC-CCC---CCEEEEEEEcCCCC
Confidence 57766422 235888888888776554321223222222 33333444 466544 220 234566655 577
Q ss_pred ceEEeccCCCCCCCCcCceEEEe-CC-EEEEEccCCCCCCcccceecccccccccCCCCCeEEec
Q 011542 164 EWMQLPVTGSVPPPRCGHTATMV-EK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLK 226 (483)
Q Consensus 164 ~W~~i~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~ 226 (483)
+++.+. ..+....-..+++. ++ .||+.+.. ... -.++.+|+++.+-+.+.
T Consensus 295 ~~~~~~---~~~~g~~~~~~~~spdg~~l~~~~~~-~~~---------v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 295 TLTKVG---YQLTGIHPRNFIITPNGKYLLVACRD-TNV---------IQIFERDQATGLLTDIK 346 (361)
T ss_dssp CEEEEE---EEECSSCCCEEEECTTSCEEEEEETT-TTE---------EEEEEECTTTCCEEECS
T ss_pred cEEEee---EecCCCCCceEEECCCCCEEEEEECC-CCC---------EEEEEEECCCCcEeecc
Confidence 777664 22222222234444 34 46655432 111 12333577777766554
No 171
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=88.84 E-value=15 Score=34.33 Aligned_cols=113 Identities=9% Similarity=-0.032 Sum_probs=62.1
Q ss_pred cEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECC
Q 011542 31 SKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTD 110 (483)
Q Consensus 31 ~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 110 (483)
+.+|+.+.. ...+++||+.+++...+.. + ......+..-++++++... +.+++||+.
T Consensus 61 ~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~----------~-~~v~~i~~~~dg~l~v~~~-------~gl~~~d~~ 117 (326)
T 2ghs_A 61 GTAWWFNIL-----ERELHELHLASGRKTVHAL----------P-FMGSALAKISDSKQLIASD-------DGLFLRDTA 117 (326)
T ss_dssp TEEEEEEGG-----GTEEEEEETTTTEEEEEEC----------S-SCEEEEEEEETTEEEEEET-------TEEEEEETT
T ss_pred CEEEEEECC-----CCEEEEEECCCCcEEEEEC----------C-CcceEEEEeCCCeEEEEEC-------CCEEEEECC
Confidence 567776543 2468999999887655431 1 1112222334678777531 249999999
Q ss_pred CCeEEEeecCCCCCCCCcccEEEEECCcEEEEEec-CCCCcCCccEEEEECCCCceEEe
Q 011542 111 IWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGG-WDGKKWLSDVYVLDTISLEWMQL 168 (483)
Q Consensus 111 t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG-~~~~~~~~~v~~yd~~t~~W~~i 168 (483)
+++...+..............++.-.++++|+... .........+++|| +++...+
T Consensus 118 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 118 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE
T ss_pred CCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe
Confidence 99887775311111111122333445667776432 11122345789999 5666654
No 172
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=88.83 E-value=16 Score=34.55 Aligned_cols=220 Identities=12% Similarity=-0.002 Sum_probs=100.6
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLD 108 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd 108 (483)
.++..++.||.++ .+.++|..+..-...-.. +..........-++..++.||.++ .+.+|+
T Consensus 74 ~d~~~l~s~s~Dg-----~v~vWd~~~~~~~~~~~~---------~~~~v~~~~~sp~g~~lasg~~d~-----~i~v~~ 134 (354)
T 2pbi_B 74 KDKRRIVSSSQDG-----KVIVWDSFTTNKEHAVTM---------PCTWVMACAYAPSGCAIACGGLDN-----KCSVYP 134 (354)
T ss_dssp TTSSEEEEEETTS-----EEEEEETTTCCEEEEEEC---------SSSCCCEEEECTTSSEEEEESTTS-----EEEEEE
T ss_pred CCCCEEEEEeCCC-----eEEEEECCCCCcceEEec---------CCCCEEEEEECCCCCEEEEeeCCC-----CEEEEE
Confidence 4566777777543 477888877665433211 211122222223567777777654 355666
Q ss_pred CCCCe-------EEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCc
Q 011542 109 TDIWQ-------WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGH 181 (483)
Q Consensus 109 ~~t~~-------W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~ 181 (483)
..... -..+.. ....-.+++...++..++.|+.+ ..+.++|+.+.+-...-. + .... -.
T Consensus 135 ~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~t~s~D-----~~v~lwd~~~~~~~~~~~-~-h~~~--v~ 200 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAM-----HTNYLSACSFTNSDMQILTASGD-----GTCALWDVESGQLLQSFH-G-HGAD--VL 200 (354)
T ss_dssp CCCCTTCCSGGGCEEEEE-----CSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTCCEEEEEE-C-CSSC--EE
T ss_pred Eeccccccccccceeeec-----cCCcEEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCCeEEEEEc-C-CCCC--eE
Confidence 54321 001110 00111122222344455566543 357888988876543210 1 1100 01
Q ss_pred eEEEe---CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCCCCCC
Q 011542 182 TATMV---EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGG 257 (483)
Q Consensus 182 ~~~~~---~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~ 257 (483)
++... ++.+++.|+..+ .+..+|+.+.+....- ....... .+++. -++..++.|+.+
T Consensus 201 ~~~~~~~~~g~~l~sgs~Dg------------~v~~wd~~~~~~~~~~---~~h~~~v-~~v~~~p~~~~l~s~s~D--- 261 (354)
T 2pbi_B 201 CLDLAPSETGNTFVSGGCDK------------KAMVWDMRSGQCVQAF---ETHESDV-NSVRYYPSGDAFASGSDD--- 261 (354)
T ss_dssp EEEECCCSSCCEEEEEETTS------------CEEEEETTTCCEEEEE---CCCSSCE-EEEEECTTSSEEEEEETT---
T ss_pred EEEEEeCCCCCEEEEEeCCC------------eEEEEECCCCcEEEEe---cCCCCCe-EEEEEeCCCCEEEEEeCC---
Confidence 12221 346777776532 3445677666543322 1111111 12222 245566666643
Q ss_pred CCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEE--CCEEEEEccCCC
Q 011542 258 WLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCL--GSLYLLFGGFDG 312 (483)
Q Consensus 258 ~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~--~~~i~v~GG~~~ 312 (483)
..+.+||+.+..-..+-.. ........++.+ ++.+++.|+.++
T Consensus 262 ---------~~v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~l~~g~~d~ 306 (354)
T 2pbi_B 262 ---------ATCRLYDLRADREVAIYSK---ESIIFGASSVDFSLSGRLLFAGYNDY 306 (354)
T ss_dssp ---------SCEEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ---------CeEEEEECCCCcEEEEEcC---CCcccceeEEEEeCCCCEEEEEECCC
Confidence 3477888876543222111 111222223333 567777777654
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=88.60 E-value=5.6 Score=37.86 Aligned_cols=109 Identities=13% Similarity=0.090 Sum_probs=59.9
Q ss_pred cceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCC
Q 011542 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPS 125 (483)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~ 125 (483)
..++.+|..+..+..+... .+.....+....-+++.+++...........++++|+.+++...+.. .+.
T Consensus 216 ~~l~~~d~~~~~~~~l~~~--------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---~~~ 284 (396)
T 3c5m_A 216 ARMWLVNEDGSNVRKIKEH--------AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV---MPP 284 (396)
T ss_dssp CCCEEEETTSCCCEESSCC--------CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE---CCS
T ss_pred ceEEEEECCCCceeEeecc--------CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee---CCC
Confidence 5799999988877766421 01111111222224443334433322222349999999988777763 222
Q ss_pred CCcccEEEEEC-CcEEEEEecCCC-----------CcCCccEEEEECCCCceEEec
Q 011542 126 PRDFAAASAIG-NRKIVMYGGWDG-----------KKWLSDVYVLDTISLEWMQLP 169 (483)
Q Consensus 126 ~r~~~~~~~~~-~~~iyv~GG~~~-----------~~~~~~v~~yd~~t~~W~~i~ 169 (483)
+..+... +++++++++... ......++.+|+.+++...+.
T Consensus 285 ----~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 336 (396)
T 3c5m_A 285 ----CSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLC 336 (396)
T ss_dssp ----EEEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEE
T ss_pred ----CCCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEcc
Confidence 1133334 556666654321 112367999999988877665
No 174
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=88.50 E-value=16 Score=34.16 Aligned_cols=154 Identities=11% Similarity=0.010 Sum_probs=74.8
Q ss_pred CcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEEC
Q 011542 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDT 109 (483)
Q Consensus 30 ~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 109 (483)
++.+++.||.++ .+.+||..+++-...-..+........|. ..++..++.|.++-. ...+..||.
T Consensus 47 d~~~l~sg~~Dg-----~v~iwd~~~~~~~~~~~~~~v~~~~~~~~----~~s~s~D~~i~~w~~------~~~~~~~~~ 111 (343)
T 3lrv_A 47 DKWVCMCRCEDG-----ALHFTQLKDSKTITTITTPNPRTGGEHPA----IISRGPCNRLLLLYP------GNQITILDS 111 (343)
T ss_dssp EEEEEEEEEETT-----EEEEEEESSSSCEEEEEEECCCTTCCCCS----EEEECSTTEEEEEET------TTEEEEEET
T ss_pred CCCEEEEECCCC-----cEEEEECCCCcEEEEEecCCceeeeeCCc----eEEecCCCeEEEEEc------cCceEEeec
Confidence 467888888654 47788887764322111100000000111 122223455665532 124667888
Q ss_pred CCCe-EEEeecCCCCCCCCcccEEEEEC--CcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe
Q 011542 110 DIWQ-WSELTSFGDLPSPRDFAAASAIG--NRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV 186 (483)
Q Consensus 110 ~t~~-W~~l~~~~~~p~~r~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~ 186 (483)
.+.+ -..... +....-.+++... ++.+++.|+.++ .+.+||+.+.+-..+. .......-.+++..
T Consensus 112 ~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~~~~~~~---~~~~~~~i~~~~~~ 179 (343)
T 3lrv_A 112 KTNKVLREIEV----DSANEIIYMYGHNEVNTEYFIWADNRG-----TIGFQSYEDDSQYIVH---SAKSDVEYSSGVLH 179 (343)
T ss_dssp TTCCEEEEEEC----CCSSCEEEEECCC---CCEEEEEETTC-----CEEEEESSSSCEEEEE---CCCSSCCCCEEEEC
T ss_pred CCcceeEEeec----CCCCCEEEEEcCCCCCCCEEEEEeCCC-----cEEEEECCCCcEEEEE---ecCCCCceEEEEEC
Confidence 7766 223321 1111112222223 556778787644 4788999888765443 11222122334444
Q ss_pred -CCEEEEEccCCCCCCcccceecccccccccCCCCCe
Q 011542 187 -EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGW 222 (483)
Q Consensus 187 -~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W 222 (483)
++.+++.|+.. ..+..||+.+..-
T Consensus 180 pdg~~lasg~~d------------g~i~iwd~~~~~~ 204 (343)
T 3lrv_A 180 KDSLLLALYSPD------------GILDVYNLSSPDQ 204 (343)
T ss_dssp TTSCEEEEECTT------------SCEEEEESSCTTS
T ss_pred CCCCEEEEEcCC------------CEEEEEECCCCCC
Confidence 56777777643 3344567766543
No 175
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=88.40 E-value=28 Score=36.88 Aligned_cols=194 Identities=10% Similarity=0.060 Sum_probs=101.0
Q ss_pred EEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEE
Q 011542 26 VNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFW 105 (483)
Q Consensus 26 ~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~ 105 (483)
+...++.|+|... +-+.+||+.+.++.... . .....-.+++..++.|++... +.++
T Consensus 69 ~~d~~g~lWigT~-------~Gl~~yd~~~~~f~~~~---------~-~~~~~i~~i~~~~g~lWigt~-------~Gl~ 124 (758)
T 3ott_A 69 VIIDNTYLYMGTD-------NGILVYNYRADRYEQPE---------T-DFPTDVRTMALQGDTLWLGAL-------NGLY 124 (758)
T ss_dssp EEETTTEEEEEET-------TEEEEEETTTTEECCCS---------C-CCCSCEEEEEEETTEEEEEET-------TEEE
T ss_pred EEcCCCcEEEEeC-------CCeEEEeCCCCEEECcc---------c-CCCceEEEEEecCCcEEEEcC-------Ccce
Confidence 3456677777431 24789999998765411 0 011112233345778887421 1488
Q ss_pred EEECCCCeEEEeecC-CCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCC-CCCcCceE
Q 011542 106 VLDTDIWQWSELTSF-GDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVP-PPRCGHTA 183 (483)
Q Consensus 106 ~yd~~t~~W~~l~~~-~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p-~~r~~~~~ 183 (483)
+||+.+++....... ..++.. .-.+++...++.|+|.. .+.+++||+.++++..+....... ....-.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~l~~~-~i~~i~~d~~g~lWigt-------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 196 (758)
T 3ott_A 125 TYQLQSRKLTSFDTRRNGLPNN-TIYSIIRTKDNQIYVGT-------YNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSL 196 (758)
T ss_dssp EEETTTCCEEEECHHHHCCSCS-CEEEEEECTTCCEEEEE-------TTEEEEEETTTTEEEEECCCCCTTCSSCCEEEE
T ss_pred eEeCCCCeEEEeccCCCCcCCC-eEEEEEEcCCCCEEEEe-------CCCHhhCccCCCceEEecCCCccccccceeEEE
Confidence 999999888776321 112221 11233333456788732 135899999999887764211100 01111222
Q ss_pred EEe--CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCCCCCCCCc
Q 011542 184 TMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLS 260 (483)
Q Consensus 184 ~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~ 260 (483)
+.. ++.|||-. . ..+..||+.+.++.... ..+.. .-.+++. .++.|+|-. .
T Consensus 197 ~~d~~~~~lWigt-~-------------~Gl~~~~~~~~~~~~~~---~l~~~-~i~~i~~d~~g~lWigT---~----- 250 (758)
T 3ott_A 197 LEDTTRQCVWIGT-E-------------GYLFQYFPSTGQIKQTE---AFHNN-SIKSLALDGNGDLLAGT---D----- 250 (758)
T ss_dssp EEETTTTEEEEEE-E-------------EEEEEEETTTTEEEEEE---EEEEE-EEEEEEECTTCCEEEEE---T-----
T ss_pred EEECCCCEEEEEE-C-------------CCCeEEcCCCCeEEecc---CCCCC-eEEEEEEcCCCCEEEEe---C-----
Confidence 222 24577732 1 23445788888776553 11111 1122222 245676632 1
Q ss_pred ccceeeCcEEEEEcCCCceEEcc
Q 011542 261 RYDIYYNDTIILDRLSAQWKRLP 283 (483)
Q Consensus 261 ~~~~~~~~v~~yd~~~~~W~~v~ 283 (483)
+-+++||+.+..+..+.
T Consensus 251 ------~Gl~~~~~~~~~~~~~~ 267 (758)
T 3ott_A 251 ------NGLYVYHNDTTPLQHII 267 (758)
T ss_dssp ------TEEEEECCTTSCCEEEC
T ss_pred ------CceeEEecCCCcEEEEE
Confidence 23778888887776654
No 176
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=88.40 E-value=27 Score=36.68 Aligned_cols=125 Identities=14% Similarity=0.159 Sum_probs=66.7
Q ss_pred EEEECCEEEEEccccCCCCCccEEEEECCCCe--EEEeecCCC--CC--C-CCcccEEEEECCcEEEEEecCCCCcCCcc
Q 011542 82 AVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQ--WSELTSFGD--LP--S-PRDFAAASAIGNRKIVMYGGWDGKKWLSD 154 (483)
Q Consensus 82 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~l~~~~~--~p--~-~r~~~~~~~~~~~~iyv~GG~~~~~~~~~ 154 (483)
-++.++.||+.... +.++.+|..|++ |+.-..... .+ . .....+.+ +.+++||+... ...
T Consensus 73 P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~v~v~~~------dg~ 139 (677)
T 1kb0_A 73 PVVVDGIMYVSASW------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVA-LWKGKVYVGAW------DGR 139 (677)
T ss_dssp CEEETTEEEEECGG------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCE-EETTEEEEECT------TSE
T ss_pred CEEECCEEEEECCC------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCce-EECCEEEEEcC------CCE
Confidence 35679999998652 358999998875 876432110 00 0 01112233 34558887532 246
Q ss_pred EEEEECCCCc--eEEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCC--eEEec
Q 011542 155 VYVLDTISLE--WMQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPG--WTQLK 226 (483)
Q Consensus 155 v~~yd~~t~~--W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~--W~~~~ 226 (483)
++.+|..|++ |+.-.............+.++.++++|+..+....+ . -..+..||..+.+ |+.-.
T Consensus 140 l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~-~------~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 140 LIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYG-V------RGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp EEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTC-C------BCEEEEEETTTCCEEEEEES
T ss_pred EEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccC-C------CCEEEEEECCCCcEEEEecc
Confidence 9999998775 876531011111122233445688888754322111 0 1345566877654 77654
No 177
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=88.32 E-value=16 Score=33.92 Aligned_cols=107 Identities=9% Similarity=0.011 Sum_probs=57.8
Q ss_pred cEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCCCCccEEEEE
Q 011542 31 SKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRRLGDFWVLD 108 (483)
Q Consensus 31 ~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~~~~~~~yd 108 (483)
+.+++.|+.++ .+.+||+.+.+-...-. .... .-.+++.. ++.+++.|+.++ .+.+||
T Consensus 85 ~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~---------~~~~-~i~~~~~~~~~~~~l~s~~~dg-----~i~iwd 144 (366)
T 3k26_A 85 HPLLAVAGSRG-----IIRIINPITMQCIKHYV---------GHGN-AINELKFHPRDPNLLLSVSKDH-----ALRLWN 144 (366)
T ss_dssp CEEEEEEETTC-----EEEEECTTTCCEEEEEE---------SCCS-CEEEEEECSSCTTEEEEEETTS-----CEEEEE
T ss_pred CCEEEEecCCC-----EEEEEEchhceEeeeec---------CCCC-cEEEEEECCCCCCEEEEEeCCC-----eEEEEE
Confidence 46777777543 58889988765432211 0111 12222222 557777777543 488999
Q ss_pred CCCCeEEEeecCCCCCC-CCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 109 TDIWQWSELTSFGDLPS-PRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 109 ~~t~~W~~l~~~~~~p~-~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
+.+.+-...-. .... ...-.+++...++..++.|+.++ .+.+||+.+.+
T Consensus 145 ~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~ 194 (366)
T 3k26_A 145 IQTDTLVAIFG--GVEGHRDEVLSADYDLLGEKIMSCGMDH-----SLKLWRINSKR 194 (366)
T ss_dssp TTTTEEEEEEC--STTSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEESCSHH
T ss_pred eecCeEEEEec--ccccccCceeEEEECCCCCEEEEecCCC-----CEEEEECCCCc
Confidence 98876544321 0111 12222333334556777777543 47888887653
No 178
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=88.30 E-value=16 Score=33.94 Aligned_cols=231 Identities=10% Similarity=-0.014 Sum_probs=110.4
Q ss_pred cceEEEEcCCCcEEeeeecCCCC-----CCC---C-CC-CCcceeEEEEE--CCEEEEEccccCCCCCccEEEEECCCCe
Q 011542 46 SDVVVYDIDNKLWFQPECTGNGS-----NGQ---V-GP-GPRAFHIAVAI--DCHMFIFGGRFGSRRLGDFWVLDTDIWQ 113 (483)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~-----~~~---~-~p-~~R~~h~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~ 113 (483)
..+++||+.+..+..+....... ++. . .+ ..+ -+.+++. +++||+.-.. ..+.++|+.++.
T Consensus 40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-p~gi~~~~~~g~l~v~d~~------~~i~~~d~~~g~ 112 (322)
T 2fp8_A 40 GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGR-TYDISYNLQNNQLYIVDCY------YHLSVVGSEGGH 112 (322)
T ss_dssp SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCC-EEEEEEETTTTEEEEEETT------TEEEEECTTCEE
T ss_pred CeEEEECCCCCceEEEecccccccccccccccchhccccCCC-CceEEEcCCCCcEEEEECC------CCEEEEeCCCCE
Confidence 45889999888777654321000 000 0 00 011 2445555 5789987321 237889988776
Q ss_pred EEEeecCCCCCCCCcccEEEEEC-CcEEEEEecCCC------------CcCCccEEEEECCCCceEEeccCCCCCCCCcC
Q 011542 114 WSELTSFGDLPSPRDFAAASAIG-NRKIVMYGGWDG------------KKWLSDVYVLDTISLEWMQLPVTGSVPPPRCG 180 (483)
Q Consensus 114 W~~l~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~------------~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~ 180 (483)
.+.+...........-..+++-. ++.||+.-.... ......+++||+.+.+.+.+.. .. ...
T Consensus 113 ~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~---~~p 187 (322)
T 2fp8_A 113 ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK--EL---HVP 187 (322)
T ss_dssp CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE--EE---SCC
T ss_pred EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc--CC---ccC
Confidence 65554210000111223344445 678988642210 0123569999998887665431 11 111
Q ss_pred ceEEEe-C-CEEEEEccCCCCCCcccceecccccccccCCC---CCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCCC
Q 011542 181 HTATMV-E-KRLLIYGGRGGGGPIMGDLWALKGLIEEENET---PGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHG 254 (483)
Q Consensus 181 ~~~~~~-~-~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~---~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~ 254 (483)
..+++. + +.|||.-... +.+.+|+++. ...+.+. ..+. ...+++ .++.|||.....
T Consensus 188 ~gia~~~dg~~lyv~d~~~------------~~I~~~~~~~~~~~~~~~~~---~~~g---P~gi~~d~~G~l~va~~~~ 249 (322)
T 2fp8_A 188 GGAEVSADSSFVLVAEFLS------------HQIVKYWLEGPKKGTAEVLV---KIPN---PGNIKRNADGHFWVSSSEE 249 (322)
T ss_dssp CEEEECTTSSEEEEEEGGG------------TEEEEEESSSTTTTCEEEEE---ECSS---EEEEEECTTSCEEEEEEEE
T ss_pred cceEECCCCCEEEEEeCCC------------CeEEEEECCCCcCCccceEE---eCCC---CCCeEECCCCCEEEEecCc
Confidence 233443 3 3588863211 3445556654 2333333 1121 223444 345788865321
Q ss_pred CCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEcc
Q 011542 255 TGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFGG 309 (483)
Q Consensus 255 ~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~GG 309 (483)
..... .......+.+||+....-..+......+ .....+++.-+++|||.+-
T Consensus 250 ~~~~~--~~~~~~~v~~~d~~G~~~~~~~~~~g~~-~~~~~~~~~~~g~L~v~~~ 301 (322)
T 2fp8_A 250 LDGNM--HGRVDPKGIKFDEFGNILEVIPLPPPFA-GEHFEQIQEHDGLLYIGTL 301 (322)
T ss_dssp TTSST--TSCEEEEEEEECTTSCEEEEEECCTTTT-TSCCCEEEEETTEEEEECS
T ss_pred ccccc--cCCCccEEEEECCCCCEEEEEECCCCCc-cccceEEEEeCCEEEEeec
Confidence 00000 0012356899998755555554321111 1223344445788888753
No 179
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=88.28 E-value=6.3 Score=44.58 Aligned_cols=109 Identities=15% Similarity=0.149 Sum_probs=58.7
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~y 107 (483)
..++..+++|+.+ ..+.+||..+.+...... .........+..-+++.++.|+.++ .+.++
T Consensus 970 sp~g~~l~~g~~~-----g~i~i~d~~~~~~~~~~~---------~h~~~v~~l~~s~dg~~l~s~~~dg-----~i~vw 1030 (1249)
T 3sfz_A 970 SPHLEYVAFGDED-----GAIKIIELPNNRVFSSGV---------GHKKAVRHIQFTADGKTLISSSEDS-----VIQVW 1030 (1249)
T ss_dssp CTTSSEEEEEETT-----SCCEEEETTTTSCEEECC---------CCSSCCCCEEECSSSSCEEEECSSS-----BEEEE
T ss_pred cCCCCEEEEEcCC-----CCEEEEEcCCCceeeecc---------cCCCceEEEEECCCCCEEEEEcCCC-----EEEEE
Confidence 3555666777643 357889988776433211 1111222222333556666666443 48899
Q ss_pred ECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceE
Q 011542 108 DTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWM 166 (483)
Q Consensus 108 d~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 166 (483)
|..++....+.. ......+++...++.+ +.|+.+ ..+..||+.+++-.
T Consensus 1031 d~~~~~~~~~~~-----~~~~v~~~~~~~~~~l-~~~~~d-----g~v~vwd~~~~~~~ 1078 (1249)
T 3sfz_A 1031 NWQTGDYVFLQA-----HQETVKDFRLLQDSRL-LSWSFD-----GTVKVWNVITGRIE 1078 (1249)
T ss_dssp ETTTTEEECCBC-----CSSCEEEEEECSSSEE-EEEESS-----SEEEEEETTTTCCC
T ss_pred ECCCCceEEEec-----CCCcEEEEEEcCCCcE-EEEECC-----CcEEEEECCCCcee
Confidence 999887654331 1122223333445444 555543 35888998877643
No 180
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=88.12 E-value=2.3 Score=41.90 Aligned_cols=98 Identities=9% Similarity=0.013 Sum_probs=51.1
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEE-CCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAI-GNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
++.+++.|+.++ .+.++|..+..-..+... ......-.+++.. .++.+++.|+.++ .+.++|+.++.
T Consensus 131 ~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~--~gH~~~V~~l~f~p~~~~~l~s~s~D~-----~v~iwd~~~~~ 198 (435)
T 4e54_B 131 HPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKG--IGAGGSITGLKFNPLNTNQFYASSMEG-----TTRLQDFKGNI 198 (435)
T ss_dssp CTTCEEEEETTS-----CEEEECSSCCSCCEEECC--CSSSCCCCEEEECSSCTTEEEEECSSS-----CEEEEETTSCE
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCCceeEEEc--cCCCCCEEEEEEeCCCCCEEEEEeCCC-----EEEEeeccCCc
Confidence 456778887654 377888876654333210 1111112233332 3456777777654 47788998877
Q ss_pred eEEeccCCCCCCCCcCceEEEe-CCEEEEEccCC
Q 011542 165 WMQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRG 197 (483)
Q Consensus 165 W~~i~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~ 197 (483)
...+.... .......++... ++.+++.|+..
T Consensus 199 ~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~d 230 (435)
T 4e54_B 199 LRVFASSD--TINIWFCSLDVSASSRMVVTGDNV 230 (435)
T ss_dssp EEEEECCS--SCSCCCCCEEEETTTTEEEEECSS
T ss_pred eeEEeccC--CCCccEEEEEECCCCCEEEEEeCC
Confidence 66554211 111122233333 56677777653
No 181
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=88.00 E-value=15 Score=33.23 Aligned_cols=147 Identities=9% Similarity=0.073 Sum_probs=70.5
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCce
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEW 165 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 165 (483)
++..++.|+.++ .+.+||.... -..+. .+....-.+++...++. ++.|+.++ .+.+||+.+.+-
T Consensus 154 ~~~~l~~~~~d~-----~i~i~d~~~~-~~~~~----~~~~~~i~~~~~~~~~~-~~~~~~dg-----~i~i~d~~~~~~ 217 (313)
T 3odt_A 154 SENKFLTASADK-----TIKLWQNDKV-IKTFS----GIHNDVVRHLAVVDDGH-FISCSNDG-----LIKLVDMHTGDV 217 (313)
T ss_dssp TTTEEEEEETTS-----CEEEEETTEE-EEEEC----SSCSSCEEEEEEEETTE-EEEEETTS-----EEEEEETTTCCE
T ss_pred CCCEEEEEECCC-----CEEEEecCce-EEEEe----ccCcccEEEEEEcCCCe-EEEccCCC-----eEEEEECCchhh
Confidence 566666666543 4777883321 11222 11222223344445556 66666533 588899887654
Q ss_pred EEeccCCCCCCCCcCceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-e
Q 011542 166 MQLPVTGSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-G 243 (483)
Q Consensus 166 ~~i~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~ 243 (483)
...- ... ...-.+++.. +++ ++.|+.. ..+..||+.+.+....- ..+..... +++. .
T Consensus 218 ~~~~---~~~-~~~i~~~~~~~~~~-l~~~~~d------------g~v~iwd~~~~~~~~~~---~~~~~~i~-~~~~~~ 276 (313)
T 3odt_A 218 LRTY---EGH-ESFVYCIKLLPNGD-IVSCGED------------RTVRIWSKENGSLKQVI---TLPAISIW-SVDCMS 276 (313)
T ss_dssp EEEE---ECC-SSCEEEEEECTTSC-EEEEETT------------SEEEEECTTTCCEEEEE---ECSSSCEE-EEEECT
T ss_pred hhhh---hcC-CceEEEEEEecCCC-EEEEecC------------CEEEEEECCCCceeEEE---eccCceEE-EEEEcc
Confidence 3321 101 1111223333 343 4555532 34556777776644333 12222222 2333 3
Q ss_pred CCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEc
Q 011542 244 GHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRL 282 (483)
Q Consensus 244 ~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v 282 (483)
++. ++.|+.+ +.+.+||+.+..+...
T Consensus 277 ~~~-~~~~~~d------------g~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 277 NGD-IIVGSSD------------NLVRIFSQEKSRWASE 302 (313)
T ss_dssp TSC-EEEEETT------------SCEEEEESCGGGCCC-
T ss_pred CCC-EEEEeCC------------CcEEEEeCCCCceeeh
Confidence 445 4445533 3588899887766543
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=87.91 E-value=17 Score=33.77 Aligned_cols=192 Identities=12% Similarity=0.094 Sum_probs=92.8
Q ss_pred cccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCC
Q 011542 44 FLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDL 123 (483)
Q Consensus 44 ~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~ 123 (483)
....+|++|..+++-..+. ........-+++.+++....++.....+|++|+.+++..++.. .
T Consensus 41 ~~~~l~~~d~~~~~~~~l~--------------~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~---~ 103 (347)
T 2gop_A 41 YENTIVIENLKNNARRFIE--------------NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE---A 103 (347)
T ss_dssp EEEEEEEEETTTCCEEEEE--------------SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE---E
T ss_pred ccceEEEEeCCCCceEEcc--------------cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc---C
Confidence 4568999999888755541 1111222224444444333321223469999999988877764 2
Q ss_pred CCCCcccEEEEECCcEEEEEecCC------------------CC----cCCccEEEEECCCCce-EEeccCCCCCCCCcC
Q 011542 124 PSPRDFAAASAIGNRKIVMYGGWD------------------GK----KWLSDVYVLDTISLEW-MQLPVTGSVPPPRCG 180 (483)
Q Consensus 124 p~~r~~~~~~~~~~~~iyv~GG~~------------------~~----~~~~~v~~yd~~t~~W-~~i~~~~~~p~~r~~ 180 (483)
+. ....+...+++.+++.... +. .....++++|+.+++. ..+. . + ..
T Consensus 104 ~~---~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~---~-~---~~ 173 (347)
T 2gop_A 104 KN---IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE---K-P---RF 173 (347)
T ss_dssp SE---EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE---E-E---TT
T ss_pred CC---ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec---C-C---Cc
Confidence 21 2222222344433333321 10 1135689999999988 6665 2 2 22
Q ss_pred ceEEEeCCEEEEEccCCCCCC--c-ccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCC-EEEEEcCCCCC
Q 011542 181 HTATMVEKRLLIYGGRGGGGP--I-MGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGH-YLLLFGGHGTG 256 (483)
Q Consensus 181 ~~~~~~~~~lyv~GG~~~~~~--~-~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~-~i~v~GG~~~~ 256 (483)
.......+.+++.+....... . . ..++.+| +.++..+.. . ... ... .-++ .|+..+.....
T Consensus 174 ~~~~~spdg~~~~~~~~~~~~~~~~~------~~l~~~d--~~~~~~l~~---~--~~~-~~~-spdg~~l~~~~~~~~~ 238 (347)
T 2gop_A 174 SSGIWHRDKIVVNVPHREIIPQYFKF------WDIYIWE--DGKEEKMFE---K--VSF-YAV-DSDGERILLYGKPEKK 238 (347)
T ss_dssp CEEEEETTEEEEEEECCCSSCCSSCC------EEEEEEE--TTEEEEEEE---E--ESE-EEE-EECSSCEEEEECCSSS
T ss_pred ccccCCCCeEEEEEeccccccccccc------ccEEEeC--CCceEEecc---C--cce-eeE-CCCCCEEEEEEccccC
Confidence 334444444555553322111 1 1 2333446 556665542 1 111 122 3344 44444322211
Q ss_pred CCCcccceeeCcEEEEEcCCCceEEccC
Q 011542 257 GWLSRYDIYYNDTIILDRLSAQWKRLPI 284 (483)
Q Consensus 257 ~~~~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (483)
+ ......+|++| +..+..+..
T Consensus 239 ~-----~~~~~~l~~~d--~~~~~~l~~ 259 (347)
T 2gop_A 239 Y-----MSEHNKLYIYD--GKEVMGILD 259 (347)
T ss_dssp C-----CCSSCEEEEEC--SSCEEESST
T ss_pred C-----ccccceEEEEC--CCceEeccc
Confidence 1 01235799999 666666643
No 183
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=87.61 E-value=21 Score=34.50 Aligned_cols=97 Identities=15% Similarity=0.108 Sum_probs=51.7
Q ss_pred cceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCC
Q 011542 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPS 125 (483)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~ 125 (483)
+.|+++|..+++-..+-... .+.......+..-++..++.|+.++ .+.++|..+++-..... ...
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~-------~~~~~V~sv~fspdg~~lasgs~Dg-----~v~iWd~~~~~~~~~~~---~h~ 189 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQME-------QPGEYISSVAWIKEGNYLAVGTSSA-----EVQLWDVQQQKRLRNMT---SHS 189 (420)
T ss_dssp TEEEEEETTTCCEEEEEECC-------STTCCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEEC---CCS
T ss_pred CEEEEEECCCCCEEEEEEec-------CCCCcEEEEEECCCCCEEEEEECCC-----eEEEEEcCCCcEEEEEe---CCC
Confidence 46899999998876654321 1111111111222567777777554 47889998876433321 112
Q ss_pred CCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCce
Q 011542 126 PRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEW 165 (483)
Q Consensus 126 ~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 165 (483)
.+ ..+... ++.+++.|+.++ .+..+|..+...
T Consensus 190 ~~--v~~~s~-~~~~l~sgs~d~-----~i~~~d~~~~~~ 221 (420)
T 4gga_A 190 AR--VGSLSW-NSYILSSGSRSG-----HIHHHDVRVAEH 221 (420)
T ss_dssp SC--EEEEEE-ETTEEEEEETTS-----EEEEEETTSSSC
T ss_pred Cc--eEEEee-CCCEEEEEeCCC-----ceeEeeecccce
Confidence 21 222333 346777777543 466677665443
No 184
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=87.28 E-value=31 Score=36.03 Aligned_cols=140 Identities=13% Similarity=0.140 Sum_probs=65.6
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~y 107 (483)
..++.+++.|+.++ .+.++|..+..-...-. .........+..-++..++.|+.++ .+.++
T Consensus 439 s~~g~~l~sgs~Dg-----~v~vwd~~~~~~~~~~~---------~h~~~v~~~~~s~~~~~l~s~s~D~-----~i~iw 499 (694)
T 3dm0_A 439 SSDGQFALSGSWDG-----ELRLWDLAAGVSTRRFV---------GHTKDVLSVAFSLDNRQIVSASRDR-----TIKLW 499 (694)
T ss_dssp CTTSSEEEEEETTS-----EEEEEETTTTEEEEEEE---------CCSSCEEEEEECTTSSCEEEEETTS-----CEEEE
T ss_pred CCCCCEEEEEeCCC-----cEEEEECCCCcceeEEe---------CCCCCEEEEEEeCCCCEEEEEeCCC-----EEEEE
Confidence 35566777777543 57888988765432211 1111111112222456666666543 36677
Q ss_pred ECCCCeEEEeecCCCCCCCCcccEEEEE-CCc--EEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEE
Q 011542 108 DTDIWQWSELTSFGDLPSPRDFAAASAI-GNR--KIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTAT 184 (483)
Q Consensus 108 d~~t~~W~~l~~~~~~p~~r~~~~~~~~-~~~--~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~ 184 (483)
|.....-..+.. .....+....++.+ .++ .+++.|+.++ .+.++|+.+.+-...- ..... .-.+++
T Consensus 500 d~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~-----~v~vwd~~~~~~~~~~---~~h~~-~v~~v~ 568 (694)
T 3dm0_A 500 NTLGECKYTISE--GGEGHRDWVSCVRFSPNTLQPTIVSASWDK-----TVKVWNLSNCKLRSTL---AGHTG-YVSTVA 568 (694)
T ss_dssp CTTSCEEEEECS--STTSCSSCEEEEEECSCSSSCEEEEEETTS-----CEEEEETTTCCEEEEE---CCCSS-CEEEEE
T ss_pred ECCCCcceeecc--CCCCCCCcEEEEEEeCCCCcceEEEEeCCC-----eEEEEECCCCcEEEEE---cCCCC-CEEEEE
Confidence 775543222221 01111111222233 222 4666776543 4788898876644322 11111 111222
Q ss_pred Ee-CCEEEEEccCC
Q 011542 185 MV-EKRLLIYGGRG 197 (483)
Q Consensus 185 ~~-~~~lyv~GG~~ 197 (483)
.. ++++++.|+..
T Consensus 569 ~spdg~~l~sg~~D 582 (694)
T 3dm0_A 569 VSPDGSLCASGGKD 582 (694)
T ss_dssp ECTTSSEEEEEETT
T ss_pred EeCCCCEEEEEeCC
Confidence 33 56777777653
No 185
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=87.17 E-value=18 Score=33.35 Aligned_cols=119 Identities=9% Similarity=0.050 Sum_probs=68.4
Q ss_pred CCCCcceeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccc
Q 011542 17 PQPRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGR 95 (483)
Q Consensus 17 p~~R~~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~ 95 (483)
|.+...+..++..++.||+.--. ...+++||+.... ...... + ..-+.+++. ++++|+....
T Consensus 29 p~~~~pegia~~~~g~lyv~d~~-----~~~I~~~d~~g~~-~~~~~~---------~--~~p~gia~~~dG~l~vad~~ 91 (306)
T 2p4o_A 29 PVNTFLENLASAPDGTIFVTNHE-----VGEIVSITPDGNQ-QIHATV---------E--GKVSGLAFTSNGDLVATGWN 91 (306)
T ss_dssp CTTCCEEEEEECTTSCEEEEETT-----TTEEEEECTTCCE-EEEEEC---------S--SEEEEEEECTTSCEEEEEEC
T ss_pred CCCCCcceEEECCCCCEEEEeCC-----CCeEEEECCCCce-EEEEeC---------C--CCceeEEEcCCCcEEEEecc
Confidence 33444555555566778887532 2458999987643 222211 1 122344443 5678886532
Q ss_pred cCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCC
Q 011542 96 FGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 96 ~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
... ..+++||+.+++...+.. .+..+.....+...++.+|+.-- ....+|++|+.+.
T Consensus 92 ~~~---~~v~~~d~~~g~~~~~~~---~~~~~~~~g~~~~~~~~~~v~d~-----~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 92 ADS---IPVVSLVKSDGTVETLLT---LPDAIFLNGITPLSDTQYLTADS-----YRGAIWLIDVVQP 148 (306)
T ss_dssp TTS---CEEEEEECTTSCEEEEEE---CTTCSCEEEEEESSSSEEEEEET-----TTTEEEEEETTTT
T ss_pred CCc---ceEEEEcCCCCeEEEEEe---CCCccccCcccccCCCcEEEEEC-----CCCeEEEEeCCCC
Confidence 111 248889998888877654 34455555555555557777542 2347899998765
No 186
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=86.94 E-value=9.4 Score=35.48 Aligned_cols=107 Identities=13% Similarity=0.093 Sum_probs=53.0
Q ss_pred EEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-C---CEEEEEccccCCCCCccEEEE
Q 011542 32 KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-D---CHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 32 ~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~---~~iyv~GG~~~~~~~~~~~~y 107 (483)
.+++.|+.+. .-..+.+||..+.+.......+ ....-.+++.. + +.+++.|+.++ .+.+|
T Consensus 32 ~l~~~~s~~~--~d~~v~iw~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~l~~~~~dg-----~i~iw 95 (357)
T 3i2n_A 32 KFVTMGNFAR--GTGVIQLYEIQHGDLKLLREIE---------KAKPIKCGTFGATSLQQRYLATGDFGG-----NLHIW 95 (357)
T ss_dssp EEEEEEC--C--CCEEEEEEEECSSSEEEEEEEE---------ESSCEEEEECTTCCTTTCCEEEEETTS-----CEEEE
T ss_pred eEEEecCccC--CCcEEEEEeCCCCcccceeeec---------ccCcEEEEEEcCCCCCCceEEEecCCC-----eEEEE
Confidence 5666665411 0145888999888765543221 11111222222 2 36667776543 47788
Q ss_pred ECCCCe--EEEeecCCCCCCCCcccEEEE------ECCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 108 DTDIWQ--WSELTSFGDLPSPRDFAAASA------IGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 108 d~~t~~--W~~l~~~~~~p~~r~~~~~~~------~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
|..+.. -..+.. .... -.++.. -.++..++.|+.++ .+.+||+.+.+
T Consensus 96 d~~~~~~~~~~~~~---~~~~--v~~~~~~~~~~~s~~~~~l~~~~~d~-----~i~vwd~~~~~ 150 (357)
T 3i2n_A 96 NLEAPEMPVYSVKG---HKEI--INAIDGIGGLGIGEGAPEIVTGSRDG-----TVKVWDPRQKD 150 (357)
T ss_dssp CTTSCSSCSEEECC---CSSC--EEEEEEESGGGCC-CCCEEEEEETTS-----CEEEECTTSCS
T ss_pred eCCCCCccEEEEEe---cccc--eEEEeeccccccCCCccEEEEEeCCC-----eEEEEeCCCCC
Confidence 887654 122221 1111 111111 12445777777543 47888888764
No 187
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=86.27 E-value=23 Score=33.49 Aligned_cols=70 Identities=10% Similarity=0.045 Sum_probs=41.8
Q ss_pred EEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEEC-CcEEEEEecCCCCcCCccEEEEECCCCceE
Q 011542 88 HMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIG-NRKIVMYGGWDGKKWLSDVYVLDTISLEWM 166 (483)
Q Consensus 88 ~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 166 (483)
++++.|+.++ .+.+||..+......... ......-.+++... ++.+++.|+.+ ..+.++|+.+....
T Consensus 87 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~ 154 (383)
T 3ei3_B 87 TTVAVGSKGG-----DIILWDYDVQNKTSFIQG--MGPGDAITGMKFNQFNTNQLFVSSIR-----GATTLRDFSGSVIQ 154 (383)
T ss_dssp TEEEEEEBTS-----CEEEEETTSTTCEEEECC--CSTTCBEEEEEEETTEEEEEEEEETT-----TEEEEEETTSCEEE
T ss_pred CEEEEEcCCC-----eEEEEeCCCcccceeeec--CCcCCceeEEEeCCCCCCEEEEEeCC-----CEEEEEECCCCceE
Confidence 6777777543 488899988776554321 01112222333334 44777777654 35788999887766
Q ss_pred Eec
Q 011542 167 QLP 169 (483)
Q Consensus 167 ~i~ 169 (483)
.+.
T Consensus 155 ~~~ 157 (383)
T 3ei3_B 155 VFA 157 (383)
T ss_dssp EEE
T ss_pred EEe
Confidence 664
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=86.26 E-value=20 Score=32.79 Aligned_cols=87 Identities=13% Similarity=0.173 Sum_probs=48.1
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCe--EEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCC
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQ--WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
.+++++.|..+ +.+.++|+++++ |+.-. +.....+.+.+..++.|++.+ .+.++.||+ ++
T Consensus 4 ~~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~pdG~ilvs~-------~~~V~~~d~-~G 65 (276)
T 3no2_A 4 PQHLLVGGSGW-----NKIAIINKDTKEIVWEYPL-----EKGWECNSVAATKAGEILFSY-------SKGAKMITR-DG 65 (276)
T ss_dssp CCEEEEECTTC-----SEEEEEETTTTEEEEEEEC-----CTTCCCCEEEECTTSCEEEEC-------BSEEEEECT-TS
T ss_pred CCcEEEeeCCC-----CEEEEEECCCCeEEEEeCC-----CccCCCcCeEECCCCCEEEeC-------CCCEEEECC-CC
Confidence 35677776533 358889987775 55432 111234566666677888832 245899998 45
Q ss_pred --ceEEeccCCCCCCCCcCceEEEe-CCEEEEEcc
Q 011542 164 --EWMQLPVTGSVPPPRCGHTATMV-EKRLLIYGG 195 (483)
Q Consensus 164 --~W~~i~~~~~~p~~r~~~~~~~~-~~~lyv~GG 195 (483)
.|+.-. +.....+++... ++++++...
T Consensus 66 ~~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~ 95 (276)
T 3no2_A 66 RELWNIAA-----PAGCEMQTARILPDGNALVAWC 95 (276)
T ss_dssp CEEEEEEC-----CTTCEEEEEEECTTSCEEEEEE
T ss_pred CEEEEEcC-----CCCccccccEECCCCCEEEEec
Confidence 366432 111122333333 566666543
No 189
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=86.04 E-value=21 Score=32.86 Aligned_cols=106 Identities=9% Similarity=0.050 Sum_probs=52.3
Q ss_pred ECCcE-EEEEcccCCCccccceEEEEc-CCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEE
Q 011542 28 IGKSK-VVVFGGLVDKRFLSDVVVYDI-DNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFW 105 (483)
Q Consensus 28 ~~~~~-l~v~GG~~~~~~~~~~~~yd~-~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~ 105 (483)
..++. .++.|+.+ ..+.+||+ .+..-..+... +....-.+++...+.+++.|+.++ .+.
T Consensus 65 ~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~---------~~~~~v~~l~~~~~~~l~s~~~d~-----~i~ 125 (342)
T 1yfq_A 65 IDNTDLQIYVGTVQ-----GEILKVDLIGSPSFQALTNN---------EANLGICRICKYGDDKLIAASWDG-----LIE 125 (342)
T ss_dssp EESSSEEEEEEETT-----SCEEEECSSSSSSEEECBSC---------CCCSCEEEEEEETTTEEEEEETTS-----EEE
T ss_pred CCCCCcEEEEEcCC-----CeEEEEEeccCCceEecccc---------CCCCceEEEEeCCCCEEEEEcCCC-----eEE
Confidence 34566 67777654 35888998 88776554310 011112223333255566666443 467
Q ss_pred EEECCCC---e----EEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCC
Q 011542 106 VLDTDIW---Q----WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTIS 162 (483)
Q Consensus 106 ~yd~~t~---~----W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t 162 (483)
++|+.+. . ...+. .......-.+++...+ . ++.|+.+ ..+.+||..+
T Consensus 126 iwd~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~-~-l~~~~~d-----~~i~i~d~~~ 179 (342)
T 1yfq_A 126 VIDPRNYGDGVIAVKNLNSN---NTKVKNKIFTMDTNSS-R-LIVGMNN-----SQVQWFRLPL 179 (342)
T ss_dssp EECHHHHTTBCEEEEESCSS---SSSSCCCEEEEEECSS-E-EEEEEST-----TEEEEEESSC
T ss_pred EEcccccccccccccCCeee---EEeeCCceEEEEecCC-c-EEEEeCC-----CeEEEEECCc
Confidence 7776530 0 11111 1222222223333344 4 5555543 3588899887
No 190
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=85.79 E-value=15 Score=37.55 Aligned_cols=98 Identities=16% Similarity=0.078 Sum_probs=55.9
Q ss_pred eEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCC
Q 011542 48 VVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPR 127 (483)
Q Consensus 48 ~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r 127 (483)
+.+||+.+++-..+... +. ......-+++.+++++..... ...++++|+.++++..+.. .+ .
T Consensus 134 ~~l~d~~~g~~~~l~~~---------~~---~~~~~spDG~~la~~~~~~~~-~~~i~~~d~~~g~~~~l~~---~~--~ 195 (582)
T 3o4h_A 134 VALYALDGGGLRELARL---------PG---FGFVSDIRGDLIAGLGFFGGG-RVSLFTSNLSSGGLRVFDS---GE--G 195 (582)
T ss_dssp EEEEEEETTEEEEEEEE---------SS---CEEEEEEETTEEEEEEEEETT-EEEEEEEETTTCCCEEECC---SS--C
T ss_pred ceEEEccCCcEEEeecC---------CC---ceEEECCCCCEEEEEEEcCCC-CeEEEEEcCCCCCceEeec---CC--C
Confidence 34778888877776532 11 222233355555555443211 2359999999998887753 11 1
Q ss_pred cccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceE
Q 011542 128 DFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWM 166 (483)
Q Consensus 128 ~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 166 (483)
.....+.-.|++.++.+..++ ...++++|+.+++..
T Consensus 196 ~~~~~~~SpDG~~l~~~~~~~---~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 196 SFSSASISPGMKVTAGLETAR---EARLVTVDPRDGSVE 231 (582)
T ss_dssp EEEEEEECTTSCEEEEEECSS---CEEEEEECTTTCCEE
T ss_pred ccccceECCCCCEEEEccCCC---eeEEEEEcCCCCcEE
Confidence 112333334555444443322 356999999999888
No 191
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=85.29 E-value=19 Score=31.67 Aligned_cols=153 Identities=16% Similarity=0.261 Sum_probs=75.8
Q ss_pred EEEEECCEEEEEccccCCCCCccEEEEECCCCeEEE--eec-CCCCCCCCcccEEEEE-CCcEEEEEecCCCCcCCccEE
Q 011542 81 IAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSE--LTS-FGDLPSPRDFAAASAI-GNRKIVMYGGWDGKKWLSDVY 156 (483)
Q Consensus 81 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~--l~~-~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~ 156 (483)
+++..++++|+|=|. -+|+++.....+.. +.. -..+|.. .. ++... .++++|+|-| +.+|
T Consensus 28 Ai~~~~g~~y~Fkg~-------~~wr~~~~~~~~~p~~I~~~wp~Lp~~-iD-Aa~~~~~~~~iyfFkG-------~~~w 91 (207)
T 1pex_A 28 AITSLRGETMIFKDR-------FFWRLHPQQVDAELFLTKSFWPELPNR-ID-AAYEHPSHDLIFIFRG-------RKFW 91 (207)
T ss_dssp EEEEETTEEEEEETT-------EEEEECSSSSCCEEEEHHHHCTTSCSS-CC-EEEEETTTTEEEEEET-------TEEE
T ss_pred EEEeCCCcEEEEECC-------EEEEEeCCCcCCCceehhHhccCCCCC-cc-EEEEeccCCcEEEEcc-------CEEE
Confidence 455678999999652 37777765433322 111 0134432 22 22223 2569999976 3467
Q ss_pred EEECCCCce---EEeccCCCCCCC-CcCceEEEe--CCEEEEEccCCCCCCcccceecccccccccCCCCCeE-----Ee
Q 011542 157 VLDTISLEW---MQLPVTGSVPPP-RCGHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWT-----QL 225 (483)
Q Consensus 157 ~yd~~t~~W---~~i~~~~~~p~~-r~~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~-----~~ 225 (483)
+|+-.+..- +.|..-| +|.. ..--+++.. ++++|+|-| +..+.||..+++-. .+
T Consensus 92 ~~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~gk~yfFkG--------------~~ywr~d~~~~~~d~gyPr~i 156 (207)
T 1pex_A 92 ALNGYDILEGYPKKISELG-LPKEVKKISAAVHFEDTGKTLLFSG--------------NQVWRYDDTNHIMDKDYPRLI 156 (207)
T ss_dssp EESTTCCCTTCSEESTTTT-CCTTCCCCCEEEECTTTSEEEEEET--------------TEEEEEETTTTEECSSCCCBH
T ss_pred EEeCCeeccCCceeccccC-CCCCCccccEEEEeCCCCEEEEEeC--------------CEEEEEeCcCccccCCCCccH
Confidence 776332111 2222111 2221 111222232 479999987 23344555433211 01
Q ss_pred c--cCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEE
Q 011542 226 K--LPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKR 281 (483)
Q Consensus 226 ~--~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 281 (483)
. -+ .+| .... ++...++++|+|-| +..|+||..+.+-..
T Consensus 157 ~~~~~-Gip-~~iD-aAf~~~g~~YfFkg--------------~~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 157 EEDFP-GIG-DKVD-AVYEKNGYIYFFNG--------------PIQFEYSIWSNRIVR 197 (207)
T ss_dssp HHHST-TSC-SCCS-EEEEETTEEEEEET--------------TEEEEEETTTTEEEE
T ss_pred HHcCC-CCC-CCcc-EEEEcCCcEEEEEC--------------CEEEEEeCCccEEec
Confidence 0 01 122 2222 44456899999977 458999987765443
No 192
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=85.27 E-value=27 Score=33.37 Aligned_cols=68 Identities=4% Similarity=-0.029 Sum_probs=35.4
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWV 106 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~ 106 (483)
..++.+++.|+.+ ..+.+||..+.+-...-. .... .-.+++.. ++..++.|+.++ .+.+
T Consensus 148 ~~~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~---------~h~~-~v~~~~~~~~~~~l~s~~~d~-----~v~i 207 (420)
T 3vl1_A 148 FPSGEALISSSQD-----MQLKIWSVKDGSNPRTLI---------GHRA-TVTDIAIIDRGRNVLSASLDG-----TIRL 207 (420)
T ss_dssp CTTSSEEEEEETT-----SEEEEEETTTCCCCEEEE---------CCSS-CEEEEEEETTTTEEEEEETTS-----CEEE
T ss_pred CCCCCEEEEEeCC-----CeEEEEeCCCCcCceEEc---------CCCC-cEEEEEEcCCCCEEEEEcCCC-----cEEE
Confidence 3455566666643 357888887654211110 0111 11222232 556666776543 4788
Q ss_pred EECCCCeEE
Q 011542 107 LDTDIWQWS 115 (483)
Q Consensus 107 yd~~t~~W~ 115 (483)
+|+.+.+-.
T Consensus 208 wd~~~~~~~ 216 (420)
T 3vl1_A 208 WECGTGTTI 216 (420)
T ss_dssp EETTTTEEE
T ss_pred eECCCCcee
Confidence 898877543
No 193
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=84.87 E-value=22 Score=32.08 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=10.4
Q ss_pred CcEEEEEcCCCceEE
Q 011542 267 NDTIILDRLSAQWKR 281 (483)
Q Consensus 267 ~~v~~yd~~~~~W~~ 281 (483)
+.+.+||+.+.+-..
T Consensus 246 g~v~iwd~~~~~~~~ 260 (313)
T 3odt_A 246 RTVRIWSKENGSLKQ 260 (313)
T ss_dssp SEEEEECTTTCCEEE
T ss_pred CEEEEEECCCCceeE
Confidence 458889987776443
No 194
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=84.32 E-value=20 Score=31.15 Aligned_cols=141 Identities=13% Similarity=0.169 Sum_probs=72.5
Q ss_pred EEEECCcEEEEEcccCCCccccceEEEEcCC--CcEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCCC
Q 011542 25 AVNIGKSKVVVFGGLVDKRFLSDVVVYDIDN--KLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRR 100 (483)
Q Consensus 25 ~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~ 100 (483)
++.+ ++.+|+|=| +.+|+++... ........... -+.+|. . --++... ++++|+|-|
T Consensus 12 i~~~-~g~~yfFkg-------~~~Wr~~~~~~~~~~~p~~Is~~---w~glP~-~-IDAa~~~~~~~~~yfFkG------ 72 (195)
T 1itv_A 12 IAEI-GNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADK---WPALPR-K-LDSVFEEPLSKKLFFFSG------ 72 (195)
T ss_dssp EEEE-TTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHH---CTTSCS-S-CSEEEECTTTCCEEEEET------
T ss_pred EEEe-CCEEEEEEC-------CEEEEEECCccccCCCcEEhhhc---cCCCCC-C-ccEEEEECCCCeEEEEeC------
Confidence 3334 578898877 4578887765 23332221110 011232 1 2233333 678999977
Q ss_pred CccEEEEECCCCeE-EEeecCCCCCCC--CcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEE-----ecc-C
Q 011542 101 LGDFWVLDTDIWQW-SELTSFGDLPSP--RDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQ-----LPV-T 171 (483)
Q Consensus 101 ~~~~~~yd~~t~~W-~~l~~~~~~p~~--r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~-----i~~-~ 171 (483)
+.+|+|+..+-.- ..+..- ++|.. ....+.. -.++++|+|-| +..|+||..+++=.. +.. =
T Consensus 73 -~~yw~~~~~~~~~Pk~i~~~-G~p~~~~~iDAA~~-~~~g~~yfFkg-------~~ywr~d~~~~~~~~gyPr~i~~~w 142 (195)
T 1itv_A 73 -RQVWVYTGASVLGPRRLDKL-GLGADVAQVTGALR-SGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRMF 142 (195)
T ss_dssp -TEEEEEETTEEEEEEEGGGG-TCCTTCCCCCEEEE-CSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHHS
T ss_pred -CEEEEEcCCccCCCEEeeec-ccCCCccceeEEEE-cCCCeEEEEeC-------CEEEEEeCCcccccCCCccChhhcC
Confidence 3488888653211 011111 24432 2333332 45679999976 357999987754211 110 0
Q ss_pred CCCCCCCcCceEEEeCCEEEEEccC
Q 011542 172 GSVPPPRCGHTATMVEKRLLIYGGR 196 (483)
Q Consensus 172 ~~~p~~r~~~~~~~~~~~lyv~GG~ 196 (483)
..+| ..-.++...++.+|+|-|.
T Consensus 143 ~Gvp--~~idaa~~~~g~~Yffkg~ 165 (195)
T 1itv_A 143 PGVP--LDTHDVFQFREKAYFCQDR 165 (195)
T ss_dssp TTSC--SSCSEEEEETTEEEEEETT
T ss_pred CCCC--CCCCEEEEeCCeEEEEeCC
Confidence 0122 2234455557999999873
No 195
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=83.95 E-value=26 Score=32.13 Aligned_cols=108 Identities=8% Similarity=0.144 Sum_probs=52.4
Q ss_pred cEEEEEcccCCCccccceEEEEcCCCcE---EeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEE
Q 011542 31 SKVVVFGGLVDKRFLSDVVVYDIDNKLW---FQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 31 ~~l~v~GG~~~~~~~~~~~~yd~~~~~W---~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~y 107 (483)
+.+++-||.++ .+.++|+.+... ....... ............-++++++.|+.++ .+..+
T Consensus 51 ~~~l~S~s~D~-----~i~vWd~~~~~~~~~~~~~~l~-------~h~~~V~~~~~s~dg~~l~s~~~d~-----~i~~~ 113 (340)
T 4aow_A 51 PDMILSASRDK-----TIIMWKLTRDETNYGIPQRALR-------GHSHFVSDVVISSDGQFALSGSWDG-----TLRLW 113 (340)
T ss_dssp TTEEEEEETTS-----CEEEEEECCSSSCSEEEEEEEC-------CCSSCEEEEEECTTSSEEEEEETTS-----EEEEE
T ss_pred CCEEEEEcCCC-----eEEEEECCCCCcccceeeEEEe-------CCCCCEEEEEECCCCCEEEEEcccc-----cceEE
Confidence 46777787654 366777665432 1111110 0111111111222556677776543 36778
Q ss_pred ECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 108 DTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 108 d~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
+........... .............++..++.|+.++ .+..+|.....
T Consensus 114 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~s~s~d~-----~~~~~d~~~~~ 161 (340)
T 4aow_A 114 DLTTGTTTRRFV----GHTKDVLSVAFSSDNRQIVSGSRDK-----TIKLWNTLGVC 161 (340)
T ss_dssp ETTTTEEEEEEE----CCSSCEEEEEECTTSSCEEEEETTS-----CEEEECTTSCE
T ss_pred eecccceeeeec----CCCCceeEEEEeecCccceeecCCC-----eEEEEEeCCCc
Confidence 887766554432 1112222223333445667776543 35667765543
No 196
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=83.92 E-value=43 Score=34.65 Aligned_cols=126 Identities=13% Similarity=0.095 Sum_probs=64.7
Q ss_pred CCcEEEEEcccCCCccccceEEEEc-CCC--cEEeeeecCCCCCCCCCCCCcceeEEEE--ECCE----EEEEccccCCC
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDI-DNK--LWFQPECTGNGSNGQVGPGPRAFHIAVA--IDCH----MFIFGGRFGSR 99 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~-~~~--~W~~~~~~~~~~~~~~~p~~R~~h~~~~--~~~~----iyv~GG~~~~~ 99 (483)
.+++||+.... ...++++|. .++ .|+.-....... .+...+.......++ .+++ ||+...
T Consensus 61 ~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~~-~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~----- 129 (599)
T 1w6s_A 61 VDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPAA-RAVACCDLVNRGLAYWPGDGKTPALILKTQL----- 129 (599)
T ss_dssp ETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGG-GGGCSSCSCCCCCEEECCCSSSCCEEEEECT-----
T ss_pred ECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCccc-cccccccccccceEEEecCCcceeEEEEEcC-----
Confidence 35789987753 246899999 776 587743211000 000000011122344 5666 877532
Q ss_pred CCccEEEEECCCCe--EEEeecCCCCCCC-CcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc--eEEec
Q 011542 100 RLGDFWVLDTDIWQ--WSELTSFGDLPSP-RDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLP 169 (483)
Q Consensus 100 ~~~~~~~yd~~t~~--W~~l~~~~~~p~~-r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~i~ 169 (483)
-..++.+|..|++ |+.-.. ..... ....+-++. ++.||+-.+.........++.||..|++ |+.-.
T Consensus 130 -dg~l~AlDa~TG~~~W~~~~~--~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 130 -DGNVAALNAETGETVWKVENS--DIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp -TSEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred -CCEEEEEECCCCCEEEeecCC--CCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 1358999998875 875431 11001 111122334 4477764321111234578999999875 87654
No 197
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=83.91 E-value=25 Score=32.02 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=18.2
Q ss_pred cEEEEEcccCCCccccceEEEEcCCCcEEeee
Q 011542 31 SKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPE 62 (483)
Q Consensus 31 ~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~ 62 (483)
+.+++.|+.++ .+.++|+.+..|..+.
T Consensus 67 g~~l~s~s~D~-----~v~iWd~~~~~~~~~~ 93 (297)
T 2pm7_B 67 GTILASCSYDG-----KVMIWKEENGRWSQIA 93 (297)
T ss_dssp CSEEEEEETTT-----EEEEEEBSSSCBCCCE
T ss_pred CCEEEEEcCCC-----EEEEEEcCCCceEEEE
Confidence 45666676543 4778898888776554
No 198
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=83.43 E-value=28 Score=32.15 Aligned_cols=106 Identities=15% Similarity=0.086 Sum_probs=58.4
Q ss_pred cEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEEEEC
Q 011542 31 SKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWVLDT 109 (483)
Q Consensus 31 ~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~ 109 (483)
+.+++.|+.++ .+.+||..+.......... ..... -.+++.. ++..++.|+.++ .+.++|.
T Consensus 54 g~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~-------~h~~~-v~~~~~~~~~~~l~s~~~dg-----~v~iwd~ 115 (368)
T 3mmy_A 54 GNFLIAGSWAN-----DVRCWEVQDSGQTIPKAQQ-------MHTGP-VLDVCWSDDGSKVFTASCDK-----TAKMWDL 115 (368)
T ss_dssp SEEEEEEETTS-----EEEEEEECTTSCEEEEEEE-------ECSSC-EEEEEECTTSSEEEEEETTS-----EEEEEET
T ss_pred ceEEEEECCCC-----cEEEEEcCCCCceeEEEec-------cccCC-EEEEEECcCCCEEEEEcCCC-----cEEEEEc
Confidence 47888887543 4788888873333211110 01111 1222222 556666666443 5889999
Q ss_pred CCCeEEEeecCCCCCCCCcccEEEE--ECCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 110 DIWQWSELTSFGDLPSPRDFAAASA--IGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 110 ~t~~W~~l~~~~~~p~~r~~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
.+.+-..+.. ... .-.+++. ..++.+++.|+.++ .+.+||+.+.+
T Consensus 116 ~~~~~~~~~~---~~~--~v~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~ 162 (368)
T 3mmy_A 116 SSNQAIQIAQ---HDA--PVKTIHWIKAPNYSCVMTGSWDK-----TLKFWDTRSSN 162 (368)
T ss_dssp TTTEEEEEEE---CSS--CEEEEEEEECSSCEEEEEEETTS-----EEEEECSSCSS
T ss_pred CCCCceeecc---ccC--ceEEEEEEeCCCCCEEEEccCCC-----cEEEEECCCCc
Confidence 9887665542 111 1222333 34567788887643 47888887764
No 199
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=83.35 E-value=29 Score=32.28 Aligned_cols=216 Identities=9% Similarity=-0.079 Sum_probs=105.0
Q ss_pred EEEECCcEEEEEcccCCCccccceEEEEcCCCc--EEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCCC
Q 011542 25 AVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRR 100 (483)
Q Consensus 25 ~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~ 100 (483)
+++..++.+|+.... ...+.+||+.... -..+........ ...... .-..+++. ++.||+..++.
T Consensus 96 ia~d~~g~l~v~d~~-----~~~v~~~~~~g~~~~~~~~~~~~~~g~-~~~~~~-~P~~ia~~~~~g~lyv~d~~~---- 164 (329)
T 3fvz_A 96 LSIDTDGNYWVTDVA-----LHQVFKLDPHSKEGPLLILGRSMQPGS-DQNHFC-QPTDVAVEPSTGAVFVSDGYC---- 164 (329)
T ss_dssp EEECTTSCEEEEETT-----TTEEEEECTTCSSCCSEEESBTTBCCC-STTCCS-SEEEEEECTTTCCEEEEECSS----
T ss_pred EEECCCCCEEEEECC-----CCEEEEEeCCCCeEEEEEecccCCCCC-CccccC-CCcEEEEeCCCCeEEEEeCCC----
Confidence 344455667776543 2357788876541 222221100000 000011 12234444 57899987532
Q ss_pred CccEEEEECCCCeEEEeecCCCC----CCCCc-ccEEEEECC-cEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCC
Q 011542 101 LGDFWVLDTDIWQWSELTSFGDL----PSPRD-FAAASAIGN-RKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSV 174 (483)
Q Consensus 101 ~~~~~~yd~~t~~W~~l~~~~~~----p~~r~-~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~ 174 (483)
.+.+.+||+....-..+...+.. +.... -+.+++-.+ +.|||.... .+.+.+||+.+++....-.. .
T Consensus 165 ~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-----~~~I~~~~~~~G~~~~~~~~--~ 237 (329)
T 3fvz_A 165 NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-----NGRIQCFKTDTKEFVREIKH--A 237 (329)
T ss_dssp CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-----TTEEEEEETTTCCEEEEECC--T
T ss_pred CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-----CCEEEEEECCCCcEEEEEec--c
Confidence 23588999765544444321111 11111 234444444 799998643 34689999987776654311 1
Q ss_pred CCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCC
Q 011542 175 PPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGH 253 (483)
Q Consensus 175 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~ 253 (483)
.....-.+++...+.+|+..|...-... .-..+..+|+.+.+....-..+ ......-.++++ -++.||+....
T Consensus 238 ~~~~~~~~~~~~pg~~~~~~g~~~v~~~-----~~~~v~~~~~~~g~~~~~~~~~-~~~~~~p~~ia~~~dG~lyvad~~ 311 (329)
T 3fvz_A 238 SFGRNVFAISYIPGFLFAVNGKPYFGDQ-----EPVQGFVMNFSSGEIIDVFKPV-RKHFDMPHDIVASEDGTVYIGDAH 311 (329)
T ss_dssp TTTTCEEEEEEETTEEEEEECCCCTTCS-----CCCCEEEEETTTCCEEEEECCS-SSCCSSEEEEEECTTSEEEEEESS
T ss_pred ccCCCcceeeecCCEEEEeCCCEEeccC-----CCcEEEEEEcCCCeEEEEEcCC-CCccCCeeEEEECCCCCEEEEECC
Confidence 1111122344445777777664221100 0134556677776655442110 111222334454 34588887643
Q ss_pred CCCCCCcccceeeCcEEEEEcCC
Q 011542 254 GTGGWLSRYDIYYNDTIILDRLS 276 (483)
Q Consensus 254 ~~~~~~~~~~~~~~~v~~yd~~~ 276 (483)
.+.|++|++..
T Consensus 312 ------------~~~I~~~~~~~ 322 (329)
T 3fvz_A 312 ------------TNTVWKFTLTE 322 (329)
T ss_dssp ------------SCCEEEEEEEE
T ss_pred ------------CCEEEEEeCCc
Confidence 24688888653
No 200
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=83.23 E-value=47 Score=34.60 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=35.3
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCC
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
++++++.|+.++ .+.++|+.++.-...-. . ....-.+++...++..++.|+.++ .+.++|....
T Consensus 441 ~g~~l~sgs~Dg-----~v~vwd~~~~~~~~~~~---~-h~~~v~~~~~s~~~~~l~s~s~D~-----~i~iwd~~~~ 504 (694)
T 3dm0_A 441 DGQFALSGSWDG-----ELRLWDLAAGVSTRRFV---G-HTKDVLSVAFSLDNRQIVSASRDR-----TIKLWNTLGE 504 (694)
T ss_dssp TSSEEEEEETTS-----EEEEEETTTTEEEEEEE---C-CSSCEEEEEECTTSSCEEEEETTS-----CEEEECTTSC
T ss_pred CCCEEEEEeCCC-----cEEEEECCCCcceeEEe---C-CCCCEEEEEEeCCCCEEEEEeCCC-----EEEEEECCCC
Confidence 567777777543 47889988775433211 1 111122333334556777777644 4667776544
No 201
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=83.10 E-value=44 Score=34.22 Aligned_cols=77 Identities=12% Similarity=0.150 Sum_probs=43.0
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCC--cEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFW 105 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~ 105 (483)
+.+++||+... ...++++|..++ .|+.-... .........+.++.++.||+-.+......-..++
T Consensus 113 ~~~~~v~v~~~------dg~l~alD~~tG~~~W~~~~~~-------~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~ 179 (571)
T 2ad6_A 113 YGAGQIVKKQA------NGHLLALDAKTGKINWEVEVCD-------PKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVN 179 (571)
T ss_dssp EETTEEEEECT------TSEEEEEETTTCCEEEEEECCC-------GGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEE
T ss_pred EECCEEEEEeC------CCEEEEEECCCCCEEEEecCCC-------CCccceeccCCEEECCEEEEEecCCccCCCCEEE
Confidence 34578888643 146899999887 58753211 0000011223345688888764322111234689
Q ss_pred EEECCCCe--EEEe
Q 011542 106 VLDTDIWQ--WSEL 117 (483)
Q Consensus 106 ~yd~~t~~--W~~l 117 (483)
.||+.+++ |+.-
T Consensus 180 a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 180 AFDLKTGELKWRAF 193 (571)
T ss_dssp EEETTTCCEEEEEE
T ss_pred EEECCCCcEEEEEc
Confidence 99998764 7654
No 202
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=82.16 E-value=30 Score=31.65 Aligned_cols=101 Identities=14% Similarity=0.175 Sum_probs=51.3
Q ss_pred CcEEEEEcccCCCccccceEEEEcC-CCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEEE
Q 011542 30 KSKVVVFGGLVDKRFLSDVVVYDID-NKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 30 ~~~l~v~GG~~~~~~~~~~~~yd~~-~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~y 107 (483)
++.||+... ...+++||+. ...|..... .+ ...+.+.. ++.||+.. .+ ..+++|
T Consensus 107 ~~~l~v~t~------~~~l~~~d~~g~~~~~~~~~-----------~~-~~~~~~~~~~g~l~vgt-~~-----~~l~~~ 162 (330)
T 3hxj_A 107 EDILYVTSM------DGHLYAINTDGTEKWRFKTK-----------KA-IYATPIVSEDGTIYVGS-ND-----NYLYAI 162 (330)
T ss_dssp TTEEEEECT------TSEEEEECTTSCEEEEEECS-----------SC-CCSCCEECTTSCEEEEC-TT-----SEEEEE
T ss_pred CCEEEEEec------CCEEEEEcCCCCEEEEEcCC-----------Cc-eeeeeEEcCCCEEEEEc-CC-----CEEEEE
Confidence 567776432 1358889987 335655321 11 11222344 56777632 21 358899
Q ss_pred ECCCC-eEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECC-CCceEEe
Q 011542 108 DTDIW-QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTI-SLEWMQL 168 (483)
Q Consensus 108 d~~t~-~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-t~~W~~i 168 (483)
|+... .|.... +.. ...+.+...++.||+.. ..+++||.. ...|+..
T Consensus 163 d~~g~~~~~~~~-----~~~-~~~~~~~d~~g~l~v~t--------~~l~~~d~~g~~~~~~~ 211 (330)
T 3hxj_A 163 NPDGTEKWRFKT-----NDA-ITSAASIGKDGTIYFGS--------DKVYAINPDGTEKWNFY 211 (330)
T ss_dssp CTTSCEEEEEEC-----SSC-CCSCCEECTTCCEEEES--------SSEEEECTTSCEEEEEC
T ss_pred CCCCCEeEEEec-----CCC-ceeeeEEcCCCEEEEEe--------CEEEEECCCCcEEEEEc
Confidence 98822 354432 111 12233333456777643 568899943 2346543
No 203
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=81.94 E-value=14 Score=37.80 Aligned_cols=154 Identities=11% Similarity=0.048 Sum_probs=73.7
Q ss_pred CEEEEEccccCCCCCccEEEEEC--CCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 87 CHMFIFGGRFGSRRLGDFWVLDT--DIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 87 ~~iyv~GG~~~~~~~~~~~~yd~--~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
+++.+.+...+......+|..+. ....- ++.. .+..+ ..+.....+.++++.+..+ .+.+||+.+++
T Consensus 75 d~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~---~~~~~--~~~~s~dg~~~~~~s~~~~-----~~~l~d~~~g~ 143 (582)
T 3o4h_A 75 GRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA---VKPMR--ILSGVDTGEAVVFTGATED-----RVALYALDGGG 143 (582)
T ss_dssp SEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT---SCSBE--EEEEEECSSCEEEEEECSS-----CEEEEEEETTE
T ss_pred CeEEEEeccCCCCcceEEEEEeccCCCccc-cccC---CCCce--eeeeCCCCCeEEEEecCCC-----CceEEEccCCc
Confidence 35554443322223346777887 44332 3332 11111 2223333334555544322 24477988888
Q ss_pred eEEeccCCCCCCCCcCceEEE-eCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE-
Q 011542 165 WMQLPVTGSVPPPRCGHTATM-VEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS- 242 (483)
Q Consensus 165 W~~i~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~- 242 (483)
-+.+. ..+. .+.+. -+++.+++++....+ ...++.+|+++.+++.+. ..+. .....+.
T Consensus 144 ~~~l~---~~~~----~~~~~spDG~~la~~~~~~~~--------~~~i~~~d~~~g~~~~l~---~~~~--~~~~~~~S 203 (582)
T 3o4h_A 144 LRELA---RLPG----FGFVSDIRGDLIAGLGFFGGG--------RVSLFTSNLSSGGLRVFD---SGEG--SFSSASIS 203 (582)
T ss_dssp EEEEE---EESS----CEEEEEEETTEEEEEEEEETT--------EEEEEEEETTTCCCEEEC---CSSC--EEEEEEEC
T ss_pred EEEee---cCCC----ceEEECCCCCEEEEEEEcCCC--------CeEEEEEcCCCCCceEee---cCCC--ccccceEC
Confidence 77775 2222 22222 355555554433221 123556688888888775 2111 1122232
Q ss_pred eCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEE
Q 011542 243 GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKR 281 (483)
Q Consensus 243 ~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 281 (483)
-+++.++.+.... ...++++|+.+.....
T Consensus 204 pDG~~l~~~~~~~----------~~~i~~~d~~~~~~~~ 232 (582)
T 3o4h_A 204 PGMKVTAGLETAR----------EARLVTVDPRDGSVED 232 (582)
T ss_dssp TTSCEEEEEECSS----------CEEEEEECTTTCCEEE
T ss_pred CCCCEEEEccCCC----------eeEEEEEcCCCCcEEE
Confidence 3444333322111 1468999998887773
No 204
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=81.74 E-value=25 Score=30.47 Aligned_cols=151 Identities=13% Similarity=0.181 Sum_probs=76.0
Q ss_pred EEEEECCEEEEEccccCCCCCccEEEEECCC--CeEEE--eec-CCCCCCCCcccEEEEE-CCcEEEEEecCCCCcCCcc
Q 011542 81 IAVAIDCHMFIFGGRFGSRRLGDFWVLDTDI--WQWSE--LTS-FGDLPSPRDFAAASAI-GNRKIVMYGGWDGKKWLSD 154 (483)
Q Consensus 81 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t--~~W~~--l~~-~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~ 154 (483)
+++.+++++|+|=|. .+|+++... ..... +.. -..+|... . ++... .++++|+|-| +.
T Consensus 11 Ai~~~~g~~yfFkg~-------~~Wr~~~~~~~~~~~p~~Is~~w~glP~~I-D-Aa~~~~~~~~~yfFkG-------~~ 74 (195)
T 1itv_A 11 AIAEIGNQLYLFKDG-------KYWRFSEGRGSRPQGPFLIADKWPALPRKL-D-SVFEEPLSKKLFFFSG-------RQ 74 (195)
T ss_dssp EEEEETTEEEEEETT-------EEEEECCSSSCCCEEEEEHHHHCTTSCSSC-S-EEEECTTTCCEEEEET-------TE
T ss_pred EEEEeCCEEEEEECC-------EEEEEECCccccCCCcEEhhhccCCCCCCc-c-EEEEECCCCeEEEEeC-------CE
Confidence 345579999999662 378887654 22222 111 12355432 2 22222 3568999977 34
Q ss_pred EEEEECCCCce-EEeccCCCCCC--CCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeE-----Eec
Q 011542 155 VYVLDTISLEW-MQLPVTGSVPP--PRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWT-----QLK 226 (483)
Q Consensus 155 v~~yd~~t~~W-~~i~~~~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~-----~~~ 226 (483)
+|+|+..+..- +.|..- .+|. .....+....++++|+|-|. ..+.||..+++-. .+.
T Consensus 75 yw~~~~~~~~~Pk~i~~~-G~p~~~~~iDAA~~~~~g~~yfFkg~--------------~ywr~d~~~~~~~~gyPr~i~ 139 (195)
T 1itv_A 75 VWVYTGASVLGPRRLDKL-GLGADVAQVTGALRSGRGKMLLFSGR--------------RLWRFDVKAQMVDPRSASEVD 139 (195)
T ss_dssp EEEEETTEEEEEEEGGGG-TCCTTCCCCCEEEECSTTEEEEEETT--------------EEEEEETTTTEECGGGCEEHH
T ss_pred EEEEcCCccCCCEEeeec-ccCCCccceeEEEEcCCCeEEEEeCC--------------EEEEEeCCcccccCCCccChh
Confidence 77787543111 112100 1222 12333333236799999772 2334555443211 111
Q ss_pred --cCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCce
Q 011542 227 --LPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQW 279 (483)
Q Consensus 227 --~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W 279 (483)
-+ ..|. . -.++...++.+|.|-| +..|+||..+..-
T Consensus 140 ~~w~-Gvp~-~-idaa~~~~g~~Yffkg--------------~~y~~~~~~~~~v 177 (195)
T 1itv_A 140 RMFP-GVPL-D-THDVFQFREKAYFCQD--------------RFYWRVSSRSELN 177 (195)
T ss_dssp HHST-TSCS-S-CSEEEEETTEEEEEET--------------TEEEEEECCTTCC
T ss_pred hcCC-CCCC-C-CCEEEEeCCeEEEEeC--------------CEEEEEECCccEE
Confidence 01 1222 2 2245556799999987 4578999876653
No 205
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=81.44 E-value=56 Score=34.20 Aligned_cols=126 Identities=14% Similarity=0.093 Sum_probs=66.7
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCC--cEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFW 105 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~ 105 (483)
+.+++||+.... ..++++|..++ .|+.-...... ............+.++.+++||+... -..++
T Consensus 64 v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~v~~~------dg~l~ 130 (668)
T 1kv9_A 64 FHDGVIYTSMSW------SRVIAVDAASGKELWRYDPEVAKV-KARTSCCDAVNRGVALWGDKVYVGTL------DGRLI 130 (668)
T ss_dssp EETTEEEEEEGG------GEEEEEETTTCCEEEEECCCCCGG-GGGGCTTCSCCCCCEEEBTEEEEECT------TSEEE
T ss_pred EECCEEEEECCC------CeEEEEECCCChhceEECCCCCcc-ccccccccCCccceEEECCEEEEEcC------CCEEE
Confidence 335788887642 46889998876 58764321100 00000000111234556888887542 13589
Q ss_pred EEECCCCe--EEEeecCCCCCC-CCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc--eEEec
Q 011542 106 VLDTDIWQ--WSELTSFGDLPS-PRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLP 169 (483)
Q Consensus 106 ~yd~~t~~--W~~l~~~~~~p~-~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~i~ 169 (483)
.+|..|++ |+.-.. +.+. .....+.++. ++.+|+..+.........++.||..|++ |+.-.
T Consensus 131 alD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 131 ALDAKTGKAIWSQQTT--DPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp EEETTTCCEEEEEECS--CTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEECCCCCEeeeeccC--CCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 99998874 876432 1111 1111222334 4577774332111234579999998875 88643
No 206
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=81.05 E-value=58 Score=34.20 Aligned_cols=127 Identities=16% Similarity=0.071 Sum_probs=66.7
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCC--cEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFW 105 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~ 105 (483)
+.+++||+.... ..++++|..++ .|+.-....... .....+.....+.++.+++||+... -..++
T Consensus 68 v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~v~v~~~------dg~l~ 134 (689)
T 1yiq_A 68 VVDGVMYTTGPF------SVVYALDARDGRLIWKYDPQSDRHR-AGEACCDAVNRGVAVWKGKVYVGVL------DGRLE 134 (689)
T ss_dssp EETTEEEEECGG------GCEEEEETTTCCEEEEECCCCCGGG-GGGCTTCSCCCCCEEETTEEEEECT------TSEEE
T ss_pred EECCEEEEEcCC------CeEEEEECCCCceeEEEcCCCCccc-cccccccCCCCccEEECCEEEEEcc------CCEEE
Confidence 345789887652 46899999876 587643111000 0000000111233567888888642 13589
Q ss_pred EEECCCCe--EEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc--eEEe
Q 011542 106 VLDTDIWQ--WSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQL 168 (483)
Q Consensus 106 ~yd~~t~~--W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~i 168 (483)
.+|..|++ |+.-.............+.++. ++.+|+-.+.........++.||..|++ |+.-
T Consensus 135 AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 135 AIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEECCCCCEeeeecCcCCCCCCccccCCcEEE-CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 99998874 8764320100011111222334 4577773322111234579999999876 8865
No 207
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=80.80 E-value=43 Score=32.57 Aligned_cols=190 Identities=17% Similarity=0.250 Sum_probs=97.1
Q ss_pred CCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccE--EEE----ECCCCce-EEeccCCCCCCCCcCce
Q 011542 110 DIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDV--YVL----DTISLEW-MQLPVTGSVPPPRCGHT 182 (483)
Q Consensus 110 ~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v--~~y----d~~t~~W-~~i~~~~~~p~~r~~~~ 182 (483)
..+.|..-. .+..|....-|+.|.+.+ .=|++|=++++..-..+ ..| +.....= +.++ . ..-..-...+
T Consensus 268 ~~spW~~t~-L~~i~~vTe~HSFa~i~~-~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~-s-ey~~~AsEPC 343 (670)
T 3ju4_A 268 HKSPWRKTD-LGLIPSVTEVHSFATIDN-NGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIP-S-EYEPDASEPC 343 (670)
T ss_dssp TTSCCEEEE-CCSCTTCSEEEEEEECSS-SCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECC-G-GGCTTEEEEE
T ss_pred ccCCceecc-cccccceeeeeeeeEecC-CceEEEeccCCCCcceeeEEEecccccCCcceeeeech-h-hhccccccch
Confidence 455675433 345777788899999976 56688866655332222 222 1112222 2222 1 1222223345
Q ss_pred EEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCC------
Q 011542 183 ATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTG------ 256 (483)
Q Consensus 183 ~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~------ 256 (483)
.-..++.||++--..-....-+-+.+ -+.....|+.+..+... --...-.+..++.||+||-....
T Consensus 344 vkyYdgvLyLtTRgt~~~~~GS~L~r------s~d~Gq~w~slrfp~nv--HhtnlPFakvgD~l~mFgsERA~nEWE~G 415 (670)
T 3ju4_A 344 IKYYDGVLYLITRGTRGDRLGSSLHR------SRDIGQTWESLRFPHNV--HHTTLPFAKVGDDLIMFGSERAENEWEAG 415 (670)
T ss_dssp EEEETTEEEEEEEESCTTSCCCEEEE------ESSTTSSCEEEECTTCC--CSSCCCEEEETTEEEEEEECSSTTCSSTT
T ss_pred hhhhCCEEEEEecCcCCCCCcceeee------ecccCCchhheeccccc--cccCCCcceeCCEEEEEeccccccccccC
Confidence 55669999998633222222233333 36678899999853211 11222345689999999954321
Q ss_pred CCCcccceeeCcEEEEEc-------CCCceEEccCC---CCCCCCCcceEEEEE-CCEEE-EEccCC
Q 011542 257 GWLSRYDIYYNDTIILDR-------LSAQWKRLPIG---NEPPPARAYHSMTCL-GSLYL-LFGGFD 311 (483)
Q Consensus 257 ~~~~~~~~~~~~v~~yd~-------~~~~W~~v~~~---~~~p~~R~~~~~~~~-~~~i~-v~GG~~ 311 (483)
....|+..........-. +.-+|.-+... +.....-.+-.++++ ++.|| ||||.+
T Consensus 416 ~pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd 482 (670)
T 3ju4_A 416 APDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGED 482 (670)
T ss_dssp CCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBC
T ss_pred CCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcc
Confidence 112333333344443332 33456555432 111223334444444 66654 999976
No 208
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=80.69 E-value=41 Score=32.24 Aligned_cols=195 Identities=11% Similarity=0.105 Sum_probs=96.5
Q ss_pred eeEEEEC--CcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCc-------ceeEEEEE----CCEE
Q 011542 23 HSAVNIG--KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPR-------AFHIAVAI----DCHM 89 (483)
Q Consensus 23 h~~~~~~--~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R-------~~h~~~~~----~~~i 89 (483)
+++++.. ++.||+.+... ..-.-+++.+-...+|..+...... +....+ ...++++. .+.|
T Consensus 58 ~~i~~dp~~~~~l~~g~~~g--~~g~gl~~s~D~G~tW~~~~~~~~~----~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 58 HHIVQDPREPERMLMAARTG--HLGPTVFRSDDGGGNWTEATRPPAF----NKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp EEEEECSSSTTCEEEEEEC----CCEEEEEESSTTSCCEECSBCCCC----CCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred EEEEECCCCCCeEEEEecCC--CCCccEEEeCCCCCCceECCccccC----CCcccccccccccceeEEEeCCCCCCCEE
Confidence 4444432 56788765421 1112477776677899987632100 000011 11223333 4677
Q ss_pred EEEccccCCCCCccEEEEECCCCeEEEeecCCCCC--------------CCCcccEEEEE--CCcEEEEEecCCCCcCCc
Q 011542 90 FIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP--------------SPRDFAAASAI--GNRKIVMYGGWDGKKWLS 153 (483)
Q Consensus 90 yv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p--------------~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~ 153 (483)
|+.+. . ..+++.+-...+|+.+......| .....+++++. ..+.||+.... .
T Consensus 132 ~~g~~-~-----ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~------g 199 (394)
T 3b7f_A 132 YAGTS-P-----QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS------G 199 (394)
T ss_dssp EEEEE-T-----TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEET------B
T ss_pred EEEec-C-----CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECC------C
Confidence 77542 1 24777777778999875311112 11122333332 13467775432 2
Q ss_pred cEEEEECCCCceEEeccCC---CCCCC-----CcCceEEEeC---CEEEEEccCCCCCCcccceecccccccccCCCCCe
Q 011542 154 DVYVLDTISLEWMQLPVTG---SVPPP-----RCGHTATMVE---KRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGW 222 (483)
Q Consensus 154 ~v~~yd~~t~~W~~i~~~~---~~p~~-----r~~~~~~~~~---~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W 222 (483)
.+++.+-...+|+.+.... .+|.+ ...+.++... +.||+... ..+++.+-...+|
T Consensus 200 gl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~--------------~gl~~s~D~G~tW 265 (394)
T 3b7f_A 200 GVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH--------------CGIYRMDRREGVW 265 (394)
T ss_dssp EEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET--------------TEEEEEETTTTEE
T ss_pred CEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC--------------CeEEEeCCCCCcc
Confidence 4788877788999885211 12221 1223444432 57777431 1233346677899
Q ss_pred EEeccCCCCCCC--CeeeEEEE---eCCEEEEEc
Q 011542 223 TQLKLPGQAPSS--RCGHTITS---GGHYLLLFG 251 (483)
Q Consensus 223 ~~~~~~g~~p~~--r~~~~~~~---~~~~i~v~G 251 (483)
+.+.. .+|.. .+..++++ ..+.||+..
T Consensus 266 ~~~~~--~l~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 266 KRIGD--AMPREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp ECGGG--GSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred eECCC--CCCCCCccceEEEEECCCCCCEEEEEe
Confidence 98863 13331 33344444 346777754
No 209
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=80.33 E-value=36 Score=31.35 Aligned_cols=64 Identities=9% Similarity=-0.020 Sum_probs=36.9
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE---ECCEEEEEccccCCCCCccEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA---IDCHMFIFGGRFGSRRLGDFW 105 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~---~~~~iyv~GG~~~~~~~~~~~ 105 (483)
.++..++.|+.+ ..+.+||..+.+...+... ...-.+++. -++.+++.|+.++ .+.
T Consensus 96 ~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~l~~~~~dg-----~i~ 154 (368)
T 3mmy_A 96 DDGSKVFTASCD-----KTAKMWDLSSNQAIQIAQH-----------DAPVKTIHWIKAPNYSCVMTGSWDK-----TLK 154 (368)
T ss_dssp TTSSEEEEEETT-----SEEEEEETTTTEEEEEEEC-----------SSCEEEEEEEECSSCEEEEEEETTS-----EEE
T ss_pred cCCCEEEEEcCC-----CcEEEEEcCCCCceeeccc-----------cCceEEEEEEeCCCCCEEEEccCCC-----cEE
Confidence 345566666543 3588899988876554321 111222222 2557777776543 478
Q ss_pred EEECCCCe
Q 011542 106 VLDTDIWQ 113 (483)
Q Consensus 106 ~yd~~t~~ 113 (483)
+||+.+.+
T Consensus 155 vwd~~~~~ 162 (368)
T 3mmy_A 155 FWDTRSSN 162 (368)
T ss_dssp EECSSCSS
T ss_pred EEECCCCc
Confidence 88887664
No 210
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=79.61 E-value=38 Score=31.14 Aligned_cols=68 Identities=9% Similarity=0.152 Sum_probs=35.8
Q ss_pred CEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECC---cEEEEEecCCCCcCCccEEEEECCCC
Q 011542 87 CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGN---RKIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 87 ~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~---~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
.++++.|+... .-..+.+||..+++...... ......-.+++...+ +.+++.|+.++ .+.+||..+.
T Consensus 31 ~~l~~~~s~~~--~d~~v~iw~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 100 (357)
T 3i2n_A 31 AKFVTMGNFAR--GTGVIQLYEIQHGDLKLLRE---IEKAKPIKCGTFGATSLQQRYLATGDFGG-----NLHIWNLEAP 100 (357)
T ss_dssp SEEEEEEC--C--CCEEEEEEEECSSSEEEEEE---EEESSCEEEEECTTCCTTTCCEEEEETTS-----CEEEECTTSC
T ss_pred ceEEEecCccC--CCcEEEEEeCCCCcccceee---ecccCcEEEEEEcCCCCCCceEEEecCCC-----eEEEEeCCCC
Confidence 36666665421 01358888988877654432 111111122222233 46777777543 4788888776
Q ss_pred c
Q 011542 164 E 164 (483)
Q Consensus 164 ~ 164 (483)
+
T Consensus 101 ~ 101 (357)
T 3i2n_A 101 E 101 (357)
T ss_dssp S
T ss_pred C
Confidence 5
No 211
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=79.00 E-value=25 Score=32.42 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=34.8
Q ss_pred cEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-C--CEEEEEccccCCCCCccEEEE
Q 011542 31 SKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-D--CHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 31 ~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~--~~iyv~GG~~~~~~~~~~~~y 107 (483)
+.+++.|+.++ .+.++|+.+..|..+.... ..... -.+++.. + +.+++.|+.++ .+.++
T Consensus 71 ~~~l~s~s~D~-----~v~iWd~~~~~~~~~~~~~-------~h~~~-V~~v~~~p~~~g~~lasgs~D~-----~i~lw 132 (316)
T 3bg1_A 71 GNILASCSYDR-----KVIIWREENGTWEKSHEHA-------GHDSS-VNSVCWAPHDYGLILACGSSDG-----AISLL 132 (316)
T ss_dssp SSCEEEEETTS-----CEEEECCSSSCCCEEEEEC-------CCSSC-CCEEEECCTTTCSCEEEECSSS-----CEEEE
T ss_pred CCEEEEEECCC-----EEEEEECCCCcceEEEEcc-------CCCCc-eEEEEECCCCCCcEEEEEcCCC-----CEEEE
Confidence 44556665432 4778888887775543321 01111 1122222 2 45667776543 36677
Q ss_pred ECCCC-eEEE
Q 011542 108 DTDIW-QWSE 116 (483)
Q Consensus 108 d~~t~-~W~~ 116 (483)
|..+. .|..
T Consensus 133 d~~~~~~~~~ 142 (316)
T 3bg1_A 133 TYTGEGQWEV 142 (316)
T ss_dssp EECSSSCEEE
T ss_pred ecCCCCCcce
Confidence 77654 4654
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=78.95 E-value=67 Score=33.61 Aligned_cols=170 Identities=13% Similarity=0.084 Sum_probs=84.7
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCC-------CcCCccEEEE
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDG-------KKWLSDVYVL 158 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~-------~~~~~~v~~y 158 (483)
+++.++++-..++..-.+++++|+.+++..... .+..+....+-. ++..||+..-... ......++++
T Consensus 139 Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~----~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~ 213 (693)
T 3iuj_A 139 DGRILAYSLSLAGSDWREIHLMDVESKQPLETP----LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFH 213 (693)
T ss_dssp TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE----EEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEE
T ss_pred CCCEEEEEEecCCCceEEEEEEECCCCCCCccc----cCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEE
Confidence 566666643333333357999999999876543 222222222223 3435555443321 1334568888
Q ss_pred ECCCCce--EEeccCCCCCC--CCcCceEEEe-CC-EEEEEccCCCCCCcccceecccccccccCCCC--CeEEeccCCC
Q 011542 159 DTISLEW--MQLPVTGSVPP--PRCGHTATMV-EK-RLLIYGGRGGGGPIMGDLWALKGLIEEENETP--GWTQLKLPGQ 230 (483)
Q Consensus 159 d~~t~~W--~~i~~~~~~p~--~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~--~W~~~~~~g~ 230 (483)
++.+..= ..+. ..+. +.....+... ++ .|++....... .+ .++.+|.++. .|..+..
T Consensus 214 ~lgt~~~~~~~v~---~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~---~~------~i~~~d~~~~~~~~~~l~~--- 278 (693)
T 3iuj_A 214 RLGTAQEDDRLVF---GAIPAQHHRYVGATVTEDDRFLLISAANSTS---GN------RLYVKDLSQENAPLLTVQG--- 278 (693)
T ss_dssp ETTSCGGGCEEEE---SCSGGGCCSEEEEEECTTSCEEEEEEESSSS---CC------EEEEEETTSTTCCCEEEEC---
T ss_pred ECCCCcccceEEE---ecCCCCCeEEEEEEEcCCCCEEEEEEccCCC---Cc------EEEEEECCCCCCceEEEeC---
Confidence 8877653 2222 1111 2222222222 44 44443332211 12 3344476554 6777762
Q ss_pred CCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCC---ceEEccCC
Q 011542 231 APSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSA---QWKRLPIG 285 (483)
Q Consensus 231 ~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~---~W~~v~~~ 285 (483)
....... .....++.+|+....+. ....|+++|+.+. .|+.+...
T Consensus 279 ~~~~~~~-~~~~~g~~l~~~t~~~~---------~~~~l~~~d~~~~~~~~~~~l~~~ 326 (693)
T 3iuj_A 279 DLDADVS-LVDNKGSTLYLLTNRDA---------PNRRLVTVDAANPGPAHWRDLIPE 326 (693)
T ss_dssp SSSSCEE-EEEEETTEEEEEECTTC---------TTCEEEEEETTSCCGGGCEEEECC
T ss_pred CCCceEE-EEeccCCEEEEEECCCC---------CCCEEEEEeCCCCCccccEEEecC
Confidence 1111111 23346788988875432 2357899998753 48876543
No 213
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=78.67 E-value=80 Score=34.83 Aligned_cols=105 Identities=11% Similarity=0.057 Sum_probs=58.0
Q ss_pred cceE-EEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCC
Q 011542 46 SDVV-VYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLP 124 (483)
Q Consensus 46 ~~~~-~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p 124 (483)
..+| ++|..+..-..+. . ........+..-+++.++++... ..++++|+.+++-..+... .
T Consensus 358 ~~l~~~~d~~~~~~~~l~-~---------~~~~~~~~~~SpDG~~la~~~~~-----~~v~~~d~~tg~~~~~~~~---~ 419 (1045)
T 1k32_A 358 GDFLGIYDYRTGKAEKFE-E---------NLGNVFAMGVDRNGKFAVVANDR-----FEIMTVDLETGKPTVIERS---R 419 (1045)
T ss_dssp EEEEEEEETTTCCEEECC-C---------CCCSEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEEC---S
T ss_pred CceEEEEECCCCCceEec-C---------CccceeeeEECCCCCEEEEECCC-----CeEEEEECCCCceEEeccC---C
Confidence 3577 7888777655543 0 11122222222355655565432 3699999999887766531 1
Q ss_pred CCCcccEEEEECCcEEEEEecCCC-----CcCCccEEEEECCCCceEEec
Q 011542 125 SPRDFAAASAIGNRKIVMYGGWDG-----KKWLSDVYVLDTISLEWMQLP 169 (483)
Q Consensus 125 ~~r~~~~~~~~~~~~iyv~GG~~~-----~~~~~~v~~yd~~t~~W~~i~ 169 (483)
.. ....++.-.|++.+++++... ......++++|+.+.+...+.
T Consensus 420 ~~-~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~ 468 (1045)
T 1k32_A 420 EA-MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT 468 (1045)
T ss_dssp SS-CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS
T ss_pred CC-CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEee
Confidence 11 112333445566556665432 123457999999988865554
No 214
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=78.56 E-value=24 Score=32.45 Aligned_cols=69 Identities=12% Similarity=0.061 Sum_probs=42.0
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCc
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
++++|+.++.+ +.++++|+.+++....-. .+.....+.++...++ .+|+.+.. ...+++||+.+++
T Consensus 10 ~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~~~v~~~~-----~~~i~~~d~~t~~ 76 (349)
T 1jmx_B 10 GHEYMIVTNYP-----NNLHVVDVASDTVYKSCV---MPDKFGPGTAMMAPDNRTAYVLNNH-----YGDIYGIDLDTCK 76 (349)
T ss_dssp TCEEEEEEETT-----TEEEEEETTTTEEEEEEE---CSSCCSSCEEEECTTSSEEEEEETT-----TTEEEEEETTTTE
T ss_pred CCEEEEEeCCC-----CeEEEEECCCCcEEEEEe---cCCCCCCceeEECCCCCEEEEEeCC-----CCcEEEEeCCCCc
Confidence 56778877643 358999999887654332 2221122344444444 57777642 3468999999887
Q ss_pred eEE
Q 011542 165 WMQ 167 (483)
Q Consensus 165 W~~ 167 (483)
-..
T Consensus 77 ~~~ 79 (349)
T 1jmx_B 77 NTF 79 (349)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 215
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=78.53 E-value=39 Score=30.71 Aligned_cols=122 Identities=9% Similarity=-0.027 Sum_probs=61.5
Q ss_pred eEEEECCc-EEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEcccc---C
Q 011542 24 SAVNIGKS-KVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRF---G 97 (483)
Q Consensus 24 ~~~~~~~~-~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~---~ 97 (483)
.++...++ .+|+.+.. ...++++|+.+.+-...-..+. .......-+.++.. ++.+|+..... .
T Consensus 38 ~~~~s~dg~~l~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 107 (337)
T 1pby_B 38 VPMVAPGGRIAYATVNK-----SESLVKIDLVTGETLGRIDLST-----PEERVKSLFGAALSPDGKTLAIYESPVRLEL 107 (337)
T ss_dssp CEEECTTSSEEEEEETT-----TTEEEEEETTTCCEEEEEECCB-----TTEEEECTTCEEECTTSSEEEEEEEEEEECS
T ss_pred ceEEcCCCCEEEEEeCC-----CCeEEEEECCCCCeEeeEEcCC-----cccccccccceEECCCCCEEEEEeccccccc
Confidence 34444455 57776543 2468999998876543221100 00000011122332 34677764211 0
Q ss_pred CC---CCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCceEEe
Q 011542 98 SR---RLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQL 168 (483)
Q Consensus 98 ~~---~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i 168 (483)
.. .-+.+++||+.+.+....-..+ .....++...++ .||+.+ ..++++|+.+++-...
T Consensus 108 ~~~~~~~~~i~v~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~--------~~i~~~d~~~~~~~~~ 169 (337)
T 1pby_B 108 THFEVQPTRVALYDAETLSRRKAFEAP-----RQITMLAWARDGSKLYGLG--------RDLHVMDPEAGTLVED 169 (337)
T ss_dssp SCEEECCCEEEEEETTTTEEEEEEECC-----SSCCCEEECTTSSCEEEES--------SSEEEEETTTTEEEEE
T ss_pred ccccccCceEEEEECCCCcEEEEEeCC-----CCcceeEECCCCCEEEEeC--------CeEEEEECCCCcEeee
Confidence 11 1256999999988765433211 112333443344 466652 4699999998875543
No 216
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=78.22 E-value=48 Score=31.58 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=50.0
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCce
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEW 165 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 165 (483)
+++.++.|+.++ .+.++|+.+.+-...-. . ....-.+++...++..++.|+.+ ..+.++|+.+++.
T Consensus 134 dg~~l~s~~~d~-----~i~iwd~~~~~~~~~~~---~-h~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd~~~~~~ 199 (393)
T 1erj_A 134 DGKFLATGAEDR-----LIRIWDIENRKIVMILQ---G-HEQDIYSLDYFPSGDKLVSGSGD-----RTVRIWDLRTGQC 199 (393)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTTEEEEEEC---C-CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEE
T ss_pred CCCEEEEEcCCC-----eEEEEECCCCcEEEEEc---c-CCCCEEEEEEcCCCCEEEEecCC-----CcEEEEECCCCee
Confidence 566777776543 48889998876543321 1 11122233334455666777654 3578889988765
Q ss_pred EEeccCCCCCCCCcCceEEEe--CCEEEEEccCC
Q 011542 166 MQLPVTGSVPPPRCGHTATMV--EKRLLIYGGRG 197 (483)
Q Consensus 166 ~~i~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~ 197 (483)
...- .... .-.+++.. ++++++.|+..
T Consensus 200 ~~~~---~~~~--~v~~~~~~~~~~~~l~~~s~d 228 (393)
T 1erj_A 200 SLTL---SIED--GVTTVAVSPGDGKYIAAGSLD 228 (393)
T ss_dssp EEEE---ECSS--CEEEEEECSTTCCEEEEEETT
T ss_pred EEEE---EcCC--CcEEEEEECCCCCEEEEEcCC
Confidence 4432 1111 11222232 45777777653
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=78.01 E-value=52 Score=31.89 Aligned_cols=210 Identities=7% Similarity=-0.043 Sum_probs=106.6
Q ss_pred eeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCCC
Q 011542 23 HSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRR 100 (483)
Q Consensus 23 h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~ 100 (483)
+.+++..++.||+.... ...+.++|+.++.-..+... ....+ .+.. ++.||+......
T Consensus 134 ~~la~d~~g~lyv~d~~-----~~~I~~id~~~g~~~~~~~~-----------~~~~~-ia~~~~g~~l~~~d~~~~--- 193 (409)
T 3hrp_A 134 WGIAAVGNNTVLAYQRD-----DPRVRLISVDDNKVTTVHPG-----------FKGGK-PAVTKDKQRVYSIGWEGT--- 193 (409)
T ss_dssp EEEEECSTTEEEEEETT-----TTEEEEEETTTTEEEEEEET-----------CCBCB-CEECTTSSEEEEEBSSTT---
T ss_pred eEEEEeCCCCEEEEecC-----CCcEEEEECCCCEEEEeecc-----------CCCCc-eeEecCCCcEEEEecCCC---
Confidence 34444567889988753 24689999998876665432 11122 3332 345666543221
Q ss_pred CccEEEEECCCCe-EEEeecCCCCCCCCcccEEEEEC-CcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCC
Q 011542 101 LGDFWVLDTDIWQ-WSELTSFGDLPSPRDFAAASAIG-NRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPR 178 (483)
Q Consensus 101 ~~~~~~yd~~t~~-W~~l~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r 178 (483)
..++++|+.++. ...+.... .+....-+++++.. ++.||+.-. ...+++||+.+.....+...+......
T Consensus 194 -~~I~~~d~~~~~~~~~~g~~~-~~~~~~p~~iav~p~~g~lyv~d~------~~~I~~~d~~~~~~~~~~~~~~~g~~~ 265 (409)
T 3hrp_A 194 -HTVYVYMKASGWAPTRIGQLG-STFSGKIGAVALDETEEWLYFVDS------NKNFGRFNVKTQEVTLIKQLELSGSLG 265 (409)
T ss_dssp -CEEEEEEGGGTTCEEEEEECC-TTSCSCCCBCEECTTSSEEEEECT------TCEEEEEETTTCCEEEEEECCCCSCCC
T ss_pred -ceEEEEEcCCCceeEEeeecc-chhcCCcEEEEEeCCCCeEEEEEC------CCcEEEEECCCCCEEEEecccccCCCC
Confidence 168999986543 23331100 10122223444444 678999421 236999999988766552111111112
Q ss_pred cC-c-eEEEe--CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCC----------CCeeeEEEEe-
Q 011542 179 CG-H-TATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPS----------SRCGHTITSG- 243 (483)
Q Consensus 179 ~~-~-~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~----------~r~~~~~~~~- 243 (483)
.. . .+++. ++.||+..... +.+.+|+++.. ...+...+..+. -..-..+++.
T Consensus 266 ~~P~~~ia~~p~~g~lyv~d~~~------------~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~ 332 (409)
T 3hrp_A 266 TNPGPYLIYYFVDSNFYMSDQNL------------SSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE 332 (409)
T ss_dssp CSSCCEEEEETTTTEEEEEETTT------------TEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT
T ss_pred CCccccEEEeCCCCEEEEEeCCC------------CEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC
Confidence 22 1 45554 47999975321 34555676554 222221110000 1112344443
Q ss_pred CCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccC
Q 011542 244 GHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPI 284 (483)
Q Consensus 244 ~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (483)
++.||+.-... .+.|.++|+.+.....+..
T Consensus 333 dG~lyvad~~~-----------~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 333 DGNFYIVDGFK-----------GYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp TCCEEEEETTT-----------TCEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEeCCC-----------CCEEEEEECCCCEEEEEeC
Confidence 45688874311 2458889966666655543
No 218
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=76.56 E-value=55 Score=31.38 Aligned_cols=67 Identities=15% Similarity=0.046 Sum_probs=35.7
Q ss_pred CCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCC-CCCcCceEEEe-CCEEEEEccCCCCCCcccceecccccc
Q 011542 136 GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVP-PPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLI 213 (483)
Q Consensus 136 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p-~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~ 213 (483)
.++.+++.|+.++ .+.+||+.+.+-...- ..+ ....-.++++. ++.+++.|+..+ .+.
T Consensus 180 ~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~~~dg------------~i~ 239 (437)
T 3gre_A 180 EEKSLLVALTNLS-----RVIIFDIRTLERLQII---ENSPRHGAVSSICIDEECCVLILGTTRG------------IID 239 (437)
T ss_dssp SSCEEEEEEETTS-----EEEEEETTTCCEEEEE---ECCGGGCCEEEEEECTTSCEEEEEETTS------------CEE
T ss_pred CCCCEEEEEeCCC-----eEEEEeCCCCeeeEEE---ccCCCCCceEEEEECCCCCEEEEEcCCC------------eEE
Confidence 3457888887543 5888999887654332 111 11111222222 566677776532 344
Q ss_pred cccCCCCCe
Q 011542 214 EEENETPGW 222 (483)
Q Consensus 214 ~yd~~~~~W 222 (483)
.||+.+.+.
T Consensus 240 iwd~~~~~~ 248 (437)
T 3gre_A 240 IWDIRFNVL 248 (437)
T ss_dssp EEETTTTEE
T ss_pred EEEcCCccE
Confidence 567666443
No 219
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=75.49 E-value=69 Score=31.99 Aligned_cols=68 Identities=9% Similarity=-0.041 Sum_probs=35.0
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCce
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEW 165 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 165 (483)
++..++.|+.++ .+.++|..+..-..+.. . ...-.+++...+++.++.|+.++ .+.+||.....-
T Consensus 314 ~~~~l~t~~~d~-----~i~~w~~~~~~~~~~~~---~--~~~v~~~~~s~~g~~l~~~~~dg-----~v~~~~~~~~~~ 378 (577)
T 2ymu_A 314 DGQTIASASDDK-----TVKLWNRNGQHLQTLTG---H--SSSVWGVAFSPDGQTIASASDDK-----TVKLWNRNGQLL 378 (577)
T ss_dssp TSSEEEEEETTS-----CEEEEETTSCEEEEECC---C--SSCEEEEEECTTSSEEEEEETTS-----EEEEEETTCCEE
T ss_pred CCCEEEEEeCCC-----eEEEEeCCCCeeEEEeC---C--CCCEEEEEECCCCCEEEEEeCCC-----EEEEEcCCCCEE
Confidence 455666665443 36677876655444331 1 11122333345567777776543 366777654443
Q ss_pred EEe
Q 011542 166 MQL 168 (483)
Q Consensus 166 ~~i 168 (483)
..+
T Consensus 379 ~~~ 381 (577)
T 2ymu_A 379 QTL 381 (577)
T ss_dssp EEE
T ss_pred EEe
Confidence 333
No 220
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=75.41 E-value=48 Score=30.16 Aligned_cols=108 Identities=9% Similarity=-0.048 Sum_probs=52.1
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWV 106 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~ 106 (483)
..++.+++.|+.+ ..+.+||..+++-...-. .. ...-.+++.. ++.+++.|+.++ .+.+
T Consensus 64 ~~~~~~l~s~s~d-----~~i~vwd~~~~~~~~~~~---------~h-~~~v~~~~~~~~~~~l~sgs~D~-----~v~l 123 (304)
T 2ynn_A 64 IARKNWIIVGSDD-----FRIRVFNYNTGEKVVDFE---------AH-PDYIRSIAVHPTKPYVLSGSDDL-----TVKL 123 (304)
T ss_dssp EGGGTEEEEEETT-----SEEEEEETTTCCEEEEEE---------CC-SSCEEEEEECSSSSEEEEEETTS-----CEEE
T ss_pred eCCCCEEEEECCC-----CEEEEEECCCCcEEEEEe---------CC-CCcEEEEEEcCCCCEEEEECCCC-----eEEE
Confidence 3445566666643 347888888765322110 01 1112222222 456666776543 3777
Q ss_pred EECCCCeEEEeecCCCCCCCCcccEEEEEC-CcEEEEEecCCCCcCCccEEEEECCCC
Q 011542 107 LDTDIWQWSELTSFGDLPSPRDFAAASAIG-NRKIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 107 yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
+|..++. ...... ......-.+++... ++.+++.|+.++ .+.+||+.+.
T Consensus 124 Wd~~~~~-~~~~~~--~~h~~~v~~v~~~p~~~~~l~sgs~D~-----~v~iwd~~~~ 173 (304)
T 2ynn_A 124 WNWENNW-ALEQTF--EGHEHFVMCVAFNPKDPSTFASGCLDR-----TVKVWSLGQS 173 (304)
T ss_dssp EEGGGTT-EEEEEE--CCCCSCEEEEEECTTCTTEEEEEETTS-----EEEEEETTCS
T ss_pred EECCCCc-chhhhh--cccCCcEEEEEECCCCCCEEEEEeCCC-----eEEEEECCCC
Confidence 8876542 111110 00111112222222 446777887654 4777887544
No 221
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=73.28 E-value=28 Score=38.59 Aligned_cols=166 Identities=13% Similarity=0.060 Sum_probs=83.8
Q ss_pred eEEEE-CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCc
Q 011542 24 SAVNI-GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLG 102 (483)
Q Consensus 24 ~~~~~-~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~ 102 (483)
.+... .|++.++++. ...++.++..+.....+.. .+..+..+.... +++.+++++. ..
T Consensus 300 ~~~~S~pdG~~la~~~------~~~i~~~~~~~~~~~~~~~---------~~~~~~~~~~~s-dg~~l~~~s~-----~~ 358 (1045)
T 1k32_A 300 AEDFSPLDGDLIAFVS------RGQAFIQDVSGTYVLKVPE---------PLRIRYVRRGGD-TKVAFIHGTR-----EG 358 (1045)
T ss_dssp EEEEEECGGGCEEEEE------TTEEEEECTTSSBEEECSC---------CSCEEEEEECSS-SEEEEEEEET-----TE
T ss_pred eeeecCCCCCEEEEEE------cCEEEEEcCCCCceEEccC---------CCcceEEeeeEc-CCCeEEEEEC-----CC
Confidence 33344 5666555554 2468888887776554421 111122233333 5554444432 24
Q ss_pred cEE-EEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCc
Q 011542 103 DFW-VLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGH 181 (483)
Q Consensus 103 ~~~-~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~ 181 (483)
.+| ++|..+..-..+.. .......++.-.+++.++++..+ ..++++|+.+++-..+.. ...... .
T Consensus 359 ~l~~~~d~~~~~~~~l~~-----~~~~~~~~~~SpDG~~la~~~~~-----~~v~~~d~~tg~~~~~~~---~~~~~v-~ 424 (1045)
T 1k32_A 359 DFLGIYDYRTGKAEKFEE-----NLGNVFAMGVDRNGKFAVVANDR-----FEIMTVDLETGKPTVIER---SREAMI-T 424 (1045)
T ss_dssp EEEEEEETTTCCEEECCC-----CCCSEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEE---CSSSCC-C
T ss_pred ceEEEEECCCCCceEecC-----CccceeeeEECCCCCEEEEECCC-----CeEEEEECCCCceEEecc---CCCCCc-c
Confidence 688 99998877655531 11222333344556666666543 379999999988776641 111111 2
Q ss_pred eEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEec
Q 011542 182 TATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLK 226 (483)
Q Consensus 182 ~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~ 226 (483)
.++.. +++.+++++........ .+.-..+..+|+.+.+...+.
T Consensus 425 ~~~~SpDG~~la~~~~~~~~~~~--~~~~~~i~l~d~~~g~~~~l~ 468 (1045)
T 1k32_A 425 DFTISDNSRFIAYGFPLKHGETD--GYVMQAIHVYDMEGRKIFAAT 468 (1045)
T ss_dssp CEEECTTSCEEEEEEEECSSTTC--SCCEEEEEEEETTTTEEEECS
T ss_pred ceEECCCCCeEEEEecCcccccc--CCCCCeEEEEECCCCcEEEee
Confidence 23333 55555555432200000 001145666788877644443
No 222
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=72.91 E-value=64 Score=33.90 Aligned_cols=120 Identities=13% Similarity=0.084 Sum_probs=63.7
Q ss_pred CcEEEEEecCCCCcCCccEEEEECCCCc--eEEeccCCCC--CCCC---cCceEEEeCCEEEEEccCCCCCCcccceecc
Q 011542 137 NRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSV--PPPR---CGHTATMVEKRLLIYGGRGGGGPIMGDLWAL 209 (483)
Q Consensus 137 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~i~~~~~~--p~~r---~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l 209 (483)
++.||+... ...++.+|..|++ |+.-...... +..+ ...+.++.++++|+....
T Consensus 70 ~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~d------------- 130 (689)
T 1yiq_A 70 DGVMYTTGP------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLD------------- 130 (689)
T ss_dssp TTEEEEECG------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTT-------------
T ss_pred CCEEEEEcC------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccC-------------
Confidence 558998754 3469999988765 8864311100 0001 122345668888886421
Q ss_pred cccccccCCCC--CeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCc--eEEc
Q 011542 210 KGLIEEENETP--GWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ--WKRL 282 (483)
Q Consensus 210 ~~~~~yd~~~~--~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~v 282 (483)
..+..+|.++. .|+.-.............+.++.++.+|+-.+.... .....++.||..+.+ |+.-
T Consensus 131 g~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~-------~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 131 GRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEF-------GVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp SEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTT-------CCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCcc-------CCCCEEEEEECCCCcEEEEec
Confidence 23445577655 477544201111112222345678888773322111 134579999988764 8764
No 223
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=72.81 E-value=70 Score=30.84 Aligned_cols=26 Identities=15% Similarity=0.035 Sum_probs=15.6
Q ss_pred EEEECCcE-EEEEecCCCCcCCccEEEEECCC
Q 011542 132 ASAIGNRK-IVMYGGWDGKKWLSDVYVLDTIS 162 (483)
Q Consensus 132 ~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~t 162 (483)
++...++. +++.|+.++ .+.+||+.+
T Consensus 187 l~~~~~~~~~l~s~~~dg-----~i~vwd~~~ 213 (430)
T 2xyi_A 187 LSWNPNLNGYLLSASDDH-----TICLWDINA 213 (430)
T ss_dssp EEECTTSTTEEEEECTTS-----CEEEEETTS
T ss_pred EEeCCCCCCeEEEEeCCC-----eEEEEeCCC
Confidence 33333334 777776543 477888876
No 224
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=72.45 E-value=49 Score=28.91 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=70.0
Q ss_pred EEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCCCCcc
Q 011542 26 VNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRRLGD 103 (483)
Q Consensus 26 ~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~~~~ 103 (483)
+...++.+|+|=| ..+|+++.....+........ -+.+|. .. -++... ++++|+|-| +.
T Consensus 29 i~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~---wp~Lp~-~i-DAa~~~~~~~~iyfFkG-------~~ 89 (207)
T 1pex_A 29 ITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSF---WPELPN-RI-DAAYEHPSHDLIFIFRG-------RK 89 (207)
T ss_dssp EEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHH---CTTSCS-SC-CEEEEETTTTEEEEEET-------TE
T ss_pred EEeCCCcEEEEEC-------CEEEEEeCCCcCCCceehhHh---ccCCCC-Cc-cEEEEeccCCcEEEEcc-------CE
Confidence 3333578888877 357888766544432221111 011232 22 233333 589999976 24
Q ss_pred EEEEECCCCeE---EEeecCCCCCCCCcccEEEE-E-CCcEEEEEecCCCCcCCccEEEEECCCCceEEeccC------C
Q 011542 104 FWVLDTDIWQW---SELTSFGDLPSPRDFAAASA-I-GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVT------G 172 (483)
Q Consensus 104 ~~~yd~~t~~W---~~l~~~~~~p~~r~~~~~~~-~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~------~ 172 (483)
+|+|+..+-.- ..|... .+|.....--++. . .++++|+|-| +..|+||..+++=..--+. .
T Consensus 90 ~w~~~~~~~~~gyPk~I~~~-GlP~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~~~d~gyPr~i~~~~~ 161 (207)
T 1pex_A 90 FWALNGYDILEGYPKKISEL-GLPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDKDYPRLIEEDFP 161 (207)
T ss_dssp EEEESTTCCCTTCSEESTTT-TCCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEECSSCCCBHHHHST
T ss_pred EEEEeCCeeccCCceecccc-CCCCCCccccEEEEeCCCCEEEEEeC-------CEEEEEeCcCccccCCCCccHHHcCC
Confidence 78886432110 122211 2443211222233 2 3579999976 4579999876532110000 0
Q ss_pred CCCCCCcCceEEEeCCEEEEEcc
Q 011542 173 SVPPPRCGHTATMVEKRLLIYGG 195 (483)
Q Consensus 173 ~~p~~r~~~~~~~~~~~lyv~GG 195 (483)
.+| ..-.++...++++|+|-|
T Consensus 162 Gip--~~iDaAf~~~g~~YfFkg 182 (207)
T 1pex_A 162 GIG--DKVDAVYEKNGYIYFFNG 182 (207)
T ss_dssp TSC--SCCSEEEEETTEEEEEET
T ss_pred CCC--CCccEEEEcCCcEEEEEC
Confidence 122 122344445899999977
No 225
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=72.41 E-value=1e+02 Score=32.60 Aligned_cols=203 Identities=13% Similarity=0.048 Sum_probs=93.6
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCC-cEEeeeecCCCCCCCCCCCCcceeEEEEECC-EEEEEccccCCCCCccEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNK-LWFQPECTGNGSNGQVGPGPRAFHIAVAIDC-HMFIFGGRFGSRRLGDFWV 106 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~-~iyv~GG~~~~~~~~~~~~ 106 (483)
.|++.++|.-..++.....++++|+.++ +. ++. ..+. ........-++ .||+. ..........++.
T Consensus 184 PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~--------~~~~-~~~~~~WspDg~~l~y~-~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 184 PEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IAD--------KVSG-TNGEIVWGPDHTSLFYV-TKDETLRENKVWR 251 (751)
T ss_dssp TTTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCC--------CEEE-ECSCCEECSSTTEEEEE-EECTTCCEEEEEE
T ss_pred CCCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCc--------cccC-ceeeEEEecCCCEEEEE-EECCCCCCCEEEE
Confidence 4677666654333333346899999887 52 110 0000 01111111233 44443 2222222246888
Q ss_pred EECCCCeE--EEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCC--ce--EEeccCCCCCCCCc
Q 011542 107 LDTDIWQW--SELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISL--EW--MQLPVTGSVPPPRC 179 (483)
Q Consensus 107 yd~~t~~W--~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~--~W--~~i~~~~~~p~~r~ 179 (483)
.++.+..= ..+-. .+...+......-.|+ .|++.... ...+.++.+|+.+. .+ +.+... ...+
T Consensus 252 ~~lgt~~~~~~lv~~---~~~~~~~~~~~~SpDg~~l~~~~~~---~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~-- 321 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYE---EHNPLFSAFMYKAADTNTLCIGSQS---PETAEVHLLDLRKGNAHNTLEIVRPR--EKGV-- 321 (751)
T ss_dssp EETTSCGGGCEEEEE---CCCTTCEEEEEECTTSSEEEEEEEC---SSCEEEEEEESSSCTTCCCEEESSCC--CTTC--
T ss_pred EECCCCchhcEEEEe---cCCCceEEEEEECCCCCEEEEEecC---CCCceEEEEECCCCCCCceeEEeecC--CCCc--
Confidence 88766431 12211 1222222222333444 45544432 13568999999875 56 666421 1111
Q ss_pred CceEE-EeCCEEEEEccCCCCCCcccceecccccccccCCC-CCeEE-eccCCCCCCCCeeeEEEEeCCEEEEEcCCCCC
Q 011542 180 GHTAT-MVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENET-PGWTQ-LKLPGQAPSSRCGHTITSGGHYLLLFGGHGTG 256 (483)
Q Consensus 180 ~~~~~-~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~-~~W~~-~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~ 256 (483)
..+.. ..++.||+........ . ..+..+|.++ ..|+. +-.. .....-......++.|++..-...
T Consensus 322 ~~s~~~~~g~~l~~~t~~~~a~--~------~~L~~~d~~~~~~~~~~li~~---~~~~~l~~~~~~~~~lv~~~~~~g- 389 (751)
T 2xe4_A 322 RYDVQMHGTSHLVILTNEGGAV--N------HKLLIAPRGQPSDWSHVLVDH---SEDVFMESIAVRSNYLVVAGRRAG- 389 (751)
T ss_dssp CEEEEEETTTEEEEEECTTTCT--T------CEEEEEETTSTTCCCCEEECC---CSSEEEEEEEECSSEEEEEEEETT-
T ss_pred eEEEeeeeCCEEEEEeCCCCCC--C------cEEEEEcCCCcccceeeEECC---CCCcEEEEEEEECCEEEEEEEeCC-
Confidence 12222 2277888887553111 1 2344456665 57876 4311 111121233445677776653322
Q ss_pred CCCcccceeeCcEEEEEc
Q 011542 257 GWLSRYDIYYNDTIILDR 274 (483)
Q Consensus 257 ~~~~~~~~~~~~v~~yd~ 274 (483)
...++++|+
T Consensus 390 ---------~~~l~~~dl 398 (751)
T 2xe4_A 390 ---------LTRIWTMMA 398 (751)
T ss_dssp ---------EEEEEEEEC
T ss_pred ---------EEEEEEEec
Confidence 356888886
No 226
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=71.71 E-value=93 Score=31.79 Aligned_cols=228 Identities=16% Similarity=0.164 Sum_probs=110.4
Q ss_pred cceEEEEcCCCcEEeeeec-CCCCCC-CCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCC
Q 011542 46 SDVVVYDIDNKLWFQPECT-GNGSNG-QVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDL 123 (483)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~-~~~~~~-~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~ 123 (483)
+.+.++|..+.+=...-.. +...+. ...|.+|..+..+..++..+++-- .....+++.|..+.....+.. +
T Consensus 266 ~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~----~~~g~v~~vd~~~~~~~~v~~---i 338 (567)
T 1qks_A 266 PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV----KETGKILLVDYTDLNNLKTTE---I 338 (567)
T ss_dssp TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE----TTTTEEEEEETTCSSEEEEEE---E
T ss_pred CeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe----cCCCeEEEEecCCCccceeee---e
Confidence 4577888776543322111 000000 001344544433333444444421 223468888887766555443 4
Q ss_pred CCCCcccEEEEECCcE-EEEEecCCCCcCCccEEEEECCCCceEEeccC-CCCCCCCcCceEEEe--CCEEEEEccCCCC
Q 011542 124 PSPRDFAAASAIGNRK-IVMYGGWDGKKWLSDVYVLDTISLEWMQLPVT-GSVPPPRCGHTATMV--EKRLLIYGGRGGG 199 (483)
Q Consensus 124 p~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~-~~~p~~r~~~~~~~~--~~~lyv~GG~~~~ 199 (483)
+.++.-|....-.+++ +|+... ..+.+.++|..+++=...-.. +..|.+..+... .. .+.+|+.+-...
T Consensus 339 ~~~~~~~d~~~~pdgr~~~va~~-----~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~- 411 (567)
T 1qks_A 339 SAERFLHDGGLDGSHRYFITAAN-----ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGD- 411 (567)
T ss_dssp ECCSSEEEEEECTTSCEEEEEEG-----GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSS-
T ss_pred eccccccCceECCCCCEEEEEeC-----CCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCC-
Confidence 5566666666555544 444432 356799999999875443333 455555333332 33 256777653221
Q ss_pred CCcccceecccccccccCCCC-----CeEEeccCCCCCCC-CeeeEEEE--eCCEEEEEcCCCCCCCCcccceeeCcEEE
Q 011542 200 GPIMGDLWALKGLIEEENETP-----GWTQLKLPGQAPSS-RCGHTITS--GGHYLLLFGGHGTGGWLSRYDIYYNDTII 271 (483)
Q Consensus 200 ~~~~~d~~~l~~~~~yd~~~~-----~W~~~~~~g~~p~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~v~~ 271 (483)
..+.++|.++. .|+.+.. .+.. .....+.. .+..+||---.+.+ ....++|.+
T Consensus 412 ----------~~Vsvid~~~~~~~~~~~kvv~~---i~~~g~g~~~i~~~p~~~~l~v~~~~~~~------~~~~~~v~v 472 (567)
T 1qks_A 412 ----------DSVALIGTDPEGHPDNAWKILDS---FPALGGGSLFIKTHPNSQYLYVDATLNPE------AEISGSVAV 472 (567)
T ss_dssp ----------SEEEEEECCTTTCTTTBTSEEEE---EECSCSCCCCEECCTTCSEEEEECTTCSS------HHHHTCEEE
T ss_pred ----------CeEEEecCCCCCCccccCEEEEE---EecCCCCCEEEEeCCCCCeEEEecCCCCC------cccCceEEE
Confidence 22334455542 2766552 1111 11111222 23478874322211 124578999
Q ss_pred EEcCCC-------ceEEccC-----CCCCCCCCcceEEEEE-CCEEEEE
Q 011542 272 LDRLSA-------QWKRLPI-----GNEPPPARAYHSMTCL-GSLYLLF 307 (483)
Q Consensus 272 yd~~~~-------~W~~v~~-----~~~~p~~R~~~~~~~~-~~~i~v~ 307 (483)
||..+. .+..++. .+ .+..|..|-...- ++.+|+.
T Consensus 473 ~d~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~~~~~s 520 (567)
T 1qks_A 473 FDIKAMTGDGSDPEFKTLPIAEWAGIT-EGQPRVVQGEFNKDGTEVWFS 520 (567)
T ss_dssp EEGGGCCCSSSCCCEEEECHHHHHTCC-SSCCEEEEEEECTTSSEEEEE
T ss_pred EECCcccccccCCCcEEeccccccccC-CCCcceEeeeECCCCCEEEEE
Confidence 998755 2344432 11 1234555544433 5677765
No 227
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=71.24 E-value=65 Score=29.80 Aligned_cols=68 Identities=13% Similarity=0.058 Sum_probs=41.7
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCce
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEW 165 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 165 (483)
++.+++.|+.++ .+.+||+.+++-..... ........+++...++.+++.|+.++ .+.+||+.+.+-
T Consensus 138 ~~~~l~s~s~dg-----~i~~wd~~~~~~~~~~~---~~~~~~i~~~~~~pdg~~lasg~~dg-----~i~iwd~~~~~~ 204 (343)
T 3lrv_A 138 NTEYFIWADNRG-----TIGFQSYEDDSQYIVHS---AKSDVEYSSGVLHKDSLLLALYSPDG-----ILDVYNLSSPDQ 204 (343)
T ss_dssp -CCEEEEEETTC-----CEEEEESSSSCEEEEEC---CCSSCCCCEEEECTTSCEEEEECTTS-----CEEEEESSCTTS
T ss_pred CCCEEEEEeCCC-----cEEEEECCCCcEEEEEe---cCCCCceEEEEECCCCCEEEEEcCCC-----EEEEEECCCCCC
Confidence 456677777543 47889998877644432 11222233444445678888887544 588899988764
Q ss_pred E
Q 011542 166 M 166 (483)
Q Consensus 166 ~ 166 (483)
.
T Consensus 205 ~ 205 (343)
T 3lrv_A 205 A 205 (343)
T ss_dssp C
T ss_pred C
Confidence 3
No 228
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=71.11 E-value=59 Score=29.30 Aligned_cols=111 Identities=12% Similarity=0.079 Sum_probs=55.8
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCC--cEEeeeecCCCCCCCCCCCCcceeEEEEE---CCEEEEEccccCCCCCcc
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAI---DCHMFIFGGRFGSRRLGD 103 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~p~~R~~h~~~~~---~~~iyv~GG~~~~~~~~~ 103 (483)
.++.+++.|+.++ .+.+||..+. .+..+.... .....-.+++.. ++.+++.|+.++ .
T Consensus 21 ~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~d~~~l~s~~~dg-----~ 82 (351)
T 3f3f_A 21 FYGRHVATCSSDQ-----HIKVFKLDKDTSNWELSDSWR--------AHDSSIVAIDWASPEYGRIIASASYDK-----T 82 (351)
T ss_dssp SSSSEEEEEETTS-----EEEEEEECSSSCCEEEEEEEE--------CCSSCEEEEEECCGGGCSEEEEEETTS-----C
T ss_pred CCCCEEEEeeCCC-----eEEEEECCCCCCcceecceec--------cCCCcEEEEEEcCCCCCCEEEEEcCCC-----e
Confidence 5566777777543 4777777643 444443221 011112223332 267777777653 3
Q ss_pred EEEEECCCC-------eEEEeecCCCCCCCCcccEEEEECC--cEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 104 FWVLDTDIW-------QWSELTSFGDLPSPRDFAAASAIGN--RKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 104 ~~~yd~~t~-------~W~~l~~~~~~p~~r~~~~~~~~~~--~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
+.+||+.+. .|..+..... ....-.+++...+ +.+++.|+.++ .+.+||+.+.+
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~ 145 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLND--SKGSLYSVKFAPAHLGLKLACLGNDG-----ILRLYDALEPS 145 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECC--CSSCEEEEEECCGGGCSEEEEEETTC-----EEEEEECSSTT
T ss_pred EEEEecCCCcccccccCcceeeeecc--cCCceeEEEEcCCCCCcEEEEecCCC-----cEEEecCCChH
Confidence 677777653 3444432111 1111222333333 56777777543 47788876543
No 229
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=71.06 E-value=71 Score=30.16 Aligned_cols=59 Identities=20% Similarity=0.097 Sum_probs=29.6
Q ss_pred eCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEE-ccCCCCCCCCCcceEEEEECCEEEEEccCCCC
Q 011542 243 GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKR-LPIGNEPPPARAYHSMTCLGSLYLLFGGFDGK 313 (483)
Q Consensus 243 ~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~-v~~~~~~p~~R~~~~~~~~~~~i~v~GG~~~~ 313 (483)
.++.+++.|+.+ ..+.+||..+..-.. +.........+...-+..-++.+++.||.++.
T Consensus 308 ~~g~~l~~g~~d------------g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 308 ISGRLLFAGYSN------------GDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKN 367 (380)
T ss_dssp SSSSEEEEECTT------------SCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred CCCCEEEEEECC------------CCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCC
Confidence 455666666543 358889986654332 22111111122222222236778888887664
No 230
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=68.90 E-value=1.1e+02 Score=31.39 Aligned_cols=122 Identities=12% Similarity=0.113 Sum_probs=63.2
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCC--cEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFW 105 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~ 105 (483)
+.+++||+.... +.++++|..++ .|+.-..... ...+.+.......++.+++||+... -..++
T Consensus 66 v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~---~~~~~~~~~~~g~a~~~~~v~~~t~------dg~l~ 130 (582)
T 1flg_A 66 VSDGVIYVTASY------SRLFALDAKTGKRLWTYNHRLPD---DIRPCCDVVNRGAAIYGDKVFFGTL------DASVV 130 (582)
T ss_dssp EETTEEEEEETT------TEEEEEESSSCCEEEEEECCCCT---TCCCSSCSCCCCCEEETTEEEEEET------TTEEE
T ss_pred EECCEEEEEcCC------CCEEEEECCCCcEEEEEcCCCCc---ccccccccCCCccEEECCEEEEEeC------CCEEE
Confidence 345789987653 23899999876 4877432211 0000000111233567888888531 13589
Q ss_pred EEECCCCe--EEEeecCCCCCCCC--cccEEEEECC---c--EEEEEecCCCC-cCCccEEEEECCCCc--eEEe
Q 011542 106 VLDTDIWQ--WSELTSFGDLPSPR--DFAAASAIGN---R--KIVMYGGWDGK-KWLSDVYVLDTISLE--WMQL 168 (483)
Q Consensus 106 ~yd~~t~~--W~~l~~~~~~p~~r--~~~~~~~~~~---~--~iyv~GG~~~~-~~~~~v~~yd~~t~~--W~~i 168 (483)
.+|..|++ |+.-.. .+... ...+-++.++ + .|| +|..... .....++.||..|++ |+.-
T Consensus 131 AlD~~TG~~~W~~~~~---~~~~~~~~~~sP~v~~~~~~G~~~v~-vg~~~~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 131 ALNKNTGKVVWKKKFA---DHGAGYTMTGAPTIVKDGKTGKVLLI-HGSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp EEESSSCCEEEEEECS---CGGGTCBCCSCCEEEECTTTCCEEEE-ECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred EEECCCCCEEeeecCC---CCCcCcccccCCEEeCCCcCCcEEEE-EeccccccCCCCEEEEEECCCCCEEeecC
Confidence 99998874 875432 11100 1111222322 1 444 4432111 234568999998775 8753
No 231
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=68.57 E-value=43 Score=28.97 Aligned_cols=109 Identities=13% Similarity=0.194 Sum_probs=58.6
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcE---EeeeecCCCCCCCCCCCCcceeEEEE-ECCEEEEEccccCCCCCcc
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLW---FQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSRRLGD 103 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W---~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~~iyv~GG~~~~~~~~~ 103 (483)
..++++|+|-| +.+|+|+..+... ..+... .+.+|......+... .++++|+|-| +.
T Consensus 59 ~~~g~~yfFkg-------~~yw~~~~~~~~~gyPk~I~~~-----~~glP~~~IDAA~~~~~~g~~yfFkG-------~~ 119 (196)
T 3c7x_A 59 RKDGKFVFFKG-------DKHWVFDEASLEPGYPKHIKEL-----GRGLPTDKIDAALFWMPNGKTYFFRG-------NK 119 (196)
T ss_dssp CTTSCEEEEET-------TEEEEEETTEECTTCSEEGGGT-----CBSCCSSCCSEEEEETTTTEEEEEET-------TE
T ss_pred eCCCcEEEecC-------CEEEEEeCCcccCCCCeEhhhc-----CCCCCCCcccEEEEEccCCEEEEEEC-------CE
Confidence 35678999877 5689998643211 011110 112332233322222 2579999966 25
Q ss_pred EEEEECCCCeEEE-----eecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCc
Q 011542 104 FWVLDTDIWQWSE-----LTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 104 ~~~yd~~t~~W~~-----l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
.|+||..+++-.. +..-..+|.. -.++....++ ++|+|-| +..|+||..+.+
T Consensus 120 yw~yd~~~~~v~~gyPk~i~~~~gip~~--idaAf~~~~~~~~YfFkg-------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 120 YYRFNEELRAVDSEYPKNIKVWEGIPES--PRGSFMGSDEVFTYFYKG-------NKYWKFNNQKLK 177 (196)
T ss_dssp EEEEETTTTEECTTCSEEGGGSBTCCSS--CSEEEECTTSSEEEEEET-------TEEEEEETTTTE
T ss_pred EEEEeCCcccccCCCCccHHHCCCcCCC--cceeEEecCCCEEEEEEC-------CEEEEEECCcce
Confidence 8999987764321 1111123322 2233334344 8999966 357899987764
No 232
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=68.17 E-value=79 Score=30.32 Aligned_cols=153 Identities=14% Similarity=0.249 Sum_probs=73.8
Q ss_pred EEEEECCEEEEEccccCCCCCccEEEEECCCCeE--EEeec-CCCCCCCCcccEEEEE-CCcEEEEEecCCCCcCCccEE
Q 011542 81 IAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQW--SELTS-FGDLPSPRDFAAASAI-GNRKIVMYGGWDGKKWLSDVY 156 (483)
Q Consensus 81 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W--~~l~~-~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~ 156 (483)
+++.+++++|+|=|. -+|+++.....- ..+.. -..+|.. .. ++... .++++|+|-| +.+|
T Consensus 185 Av~~~~g~~~fFkg~-------~~Wr~~~~~~~~~p~~I~~~wpgLP~~-iD-Aa~~~~~~g~~~fFkg-------~~yW 248 (365)
T 3ba0_A 185 AVTTVGNKIFFFKDR-------FFWLKVSERPKTSVNLISSLWPTLPSG-IE-AAYEIEARNQVFLFKD-------DKYW 248 (365)
T ss_dssp CEEEETTEEEEEETT-------EEEECCSSCCCCCEEEHHHHCSSCCSS-CC-EEEEEGGGTEEEEEET-------TEEE
T ss_pred eEEEcCCeEEEEeCC-------EEEEEcCCCccCCccchhhhccCCCCC-cc-EEEEecCCCEEEEEeC-------CEEE
Confidence 345578899999652 367766543211 11111 0134432 22 22223 3569999976 3466
Q ss_pred EEECCCCc--e-EEeccCCCCCCC-CcCceEEEe--CCEEEEEccCCCCCCcccceecccccccccCCCCCeEE-----e
Q 011542 157 VLDTISLE--W-MQLPVTGSVPPP-RCGHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQ-----L 225 (483)
Q Consensus 157 ~yd~~t~~--W-~~i~~~~~~p~~-r~~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~-----~ 225 (483)
+|+..+.. + +.|..-| +|.. ..--++... ++++|+|-| +..+.||..+.+-.. +
T Consensus 249 r~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~~~~yfFkG--------------~~yw~yd~~~~~v~~gyPk~I 313 (365)
T 3ba0_A 249 LISNLRPEPNYPKSIHSFG-FPNFVKKIDAAVFNPRFYRTYFFVD--------------NQYWRYDERRQMMDPGYPKLI 313 (365)
T ss_dssp ECSTTSCTTTCSEETTTTT-CCTTCCCCCEEEEETTTTEEEEEET--------------TEEEEEETTTTEECSSCCCCH
T ss_pred EEcCCcccCCCCceeeecc-CCCCCCCcCEEEEeCCCCEEEEEEC--------------CEEEEEeCCcceecCCCCcch
Confidence 66543211 1 1222111 2321 112233333 579999977 233444544332110 1
Q ss_pred c--cCCCCCCCCeeeEEEEe-CCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEE
Q 011542 226 K--LPGQAPSSRCGHTITSG-GHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKR 281 (483)
Q Consensus 226 ~--~~g~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 281 (483)
. -+ ..|. ... +++.. ++++|.|-| +..|+||..+.+-..
T Consensus 314 ~~~f~-g~p~-~iD-aA~~~~~g~~YfFkg--------------~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 314 TKNFQ-GIGP-KID-AVFYSKNKYYYFFQG--------------SNQFEYDFLLQRITK 355 (365)
T ss_dssp HHHST-TCCS-SCS-EEEEETTTEEEEEET--------------TEEEEEETTTTEEEE
T ss_pred hhcCC-CCCC-ccc-eeeEecCCcEEEEeC--------------CEEEEEECCccEEec
Confidence 0 01 1121 222 34434 789999877 458999988776554
No 233
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=67.57 E-value=74 Score=29.04 Aligned_cols=117 Identities=10% Similarity=-0.056 Sum_probs=59.9
Q ss_pred eeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCC
Q 011542 23 HSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRL 101 (483)
Q Consensus 23 h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~ 101 (483)
+.+++..++++|+.....+. ..++.||+.+++...+... +..+.....+.. ++.+|+.-. ..
T Consensus 75 ~gia~~~dG~l~vad~~~~~---~~v~~~d~~~g~~~~~~~~---------~~~~~~~g~~~~~~~~~~v~d~-----~~ 137 (306)
T 2p4o_A 75 SGLAFTSNGDLVATGWNADS---IPVVSLVKSDGTVETLLTL---------PDAIFLNGITPLSDTQYLTADS-----YR 137 (306)
T ss_dssp EEEEECTTSCEEEEEECTTS---CEEEEEECTTSCEEEEEEC---------TTCSCEEEEEESSSSEEEEEET-----TT
T ss_pred eeEEEcCCCcEEEEeccCCc---ceEEEEcCCCCeEEEEEeC---------CCccccCcccccCCCcEEEEEC-----CC
Confidence 34444456677776532111 2478899888887766532 223433444333 456777531 12
Q ss_pred ccEEEEECCCCeEEE--eecCC--CCCCC--CcccEEEEECCcEEEEEecCCCCcCCccEEEEECCC
Q 011542 102 GDFWVLDTDIWQWSE--LTSFG--DLPSP--RDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTIS 162 (483)
Q Consensus 102 ~~~~~yd~~t~~W~~--l~~~~--~~p~~--r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t 162 (483)
..+|++|+.+..-.. ..... ..+.. .....+ ...++.+|+.-- ..+.+++|++..
T Consensus 138 g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-s~dg~~lyv~d~-----~~~~I~~~~~~~ 198 (306)
T 2p4o_A 138 GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-KRFGNFLYVSNT-----EKMLLLRIPVDS 198 (306)
T ss_dssp TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-EEETTEEEEEET-----TTTEEEEEEBCT
T ss_pred CeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-CcCCCEEEEEeC-----CCCEEEEEEeCC
Confidence 469999998653211 11100 01111 111122 333447888642 346789999875
No 234
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=66.87 E-value=28 Score=30.21 Aligned_cols=66 Identities=23% Similarity=0.365 Sum_probs=36.9
Q ss_pred ECCEEEEEccccCCCCCccEEEEECCCCeE---EEeecCC-CCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEEC
Q 011542 85 IDCHMFIFGGRFGSRRLGDFWVLDTDIWQW---SELTSFG-DLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDT 160 (483)
Q Consensus 85 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W---~~l~~~~-~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 160 (483)
.++++|+|-| +.+|+|+..+... ..+.... .+|......+...-.++++|+|-| +..|+||.
T Consensus 60 ~~g~~yfFkg-------~~yw~~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG-------~~yw~yd~ 125 (196)
T 3c7x_A 60 KDGKFVFFKG-------DKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG-------NKYYRFNE 125 (196)
T ss_dssp TTSCEEEEET-------TEEEEEETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEET-------TEEEEEET
T ss_pred CCCcEEEecC-------CEEEEEeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEEC-------CEEEEEeC
Confidence 4678999966 3478998542110 1222211 244333333332224679999976 35789998
Q ss_pred CCCc
Q 011542 161 ISLE 164 (483)
Q Consensus 161 ~t~~ 164 (483)
.+++
T Consensus 126 ~~~~ 129 (196)
T 3c7x_A 126 ELRA 129 (196)
T ss_dssp TTTE
T ss_pred Cccc
Confidence 7653
No 235
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=66.62 E-value=99 Score=30.14 Aligned_cols=175 Identities=15% Similarity=0.207 Sum_probs=94.6
Q ss_pred CCCCcceeEEEEECCEEEEEccccCCCCCccE--EEEE-----CCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEe-
Q 011542 73 GPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDF--WVLD-----TDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYG- 144 (483)
Q Consensus 73 ~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~--~~yd-----~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~G- 144 (483)
.|..---|+.+.+++.-|.+|=-+++..-..+ ..|. +..-.=++++. ......+.. |+-..++.+|+.-
T Consensus 280 i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~s--ey~~~AsEP-CvkyYdgvLyLtTR 356 (670)
T 3ju4_A 280 IPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPS--EYEPDASEP-CIKYYDGVLYLITR 356 (670)
T ss_dssp CTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCG--GGCTTEEEE-EEEEETTEEEEEEE
T ss_pred ccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechh--hhccccccc-hhhhhCCEEEEEec
Confidence 35555679999999988999866654433332 2221 12222233332 111112222 2334466999886
Q ss_pred cCCCCcCCccEEEEECCCCceEEeccCCCCCCCC--cCceEEEeCCEEEEEccCCCCCC--------cc----cceecc-
Q 011542 145 GWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPR--CGHTATMVEKRLLIYGGRGGGGP--------IM----GDLWAL- 209 (483)
Q Consensus 145 G~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r--~~~~~~~~~~~lyv~GG~~~~~~--------~~----~d~~~l- 209 (483)
|..+...-+.+.+-+..-..|+.+.. |... ...-.+.+++.||+||-....+. .+ ...+.+
T Consensus 357 gt~~~~~GS~L~rs~d~Gq~w~slrf----p~nvHhtnlPFakvgD~l~mFgsERA~nEWE~G~pD~RY~a~yPRtF~~r 432 (670)
T 3ju4_A 357 GTRGDRLGSSLHRSRDIGQTWESLRF----PHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYPRTFYAR 432 (670)
T ss_dssp ESCTTSCCCEEEEESSTTSSCEEEEC----TTCCCSSCCCEEEETTEEEEEEECSSTTCSSTTCCCCCSSCBCCEEEEEE
T ss_pred CcCCCCCcceeeeecccCCchhheec----cccccccCCCcceeCCEEEEEeccccccccccCCCcccccccCCceEEEE
Confidence 45555666778888888899999863 3222 22234556999999986543211 11 111111
Q ss_pred cccccccCCCCCeEEecc---CCCCCCCCeeeEEE-EeCCE-EEEEcCCC
Q 011542 210 KGLIEEENETPGWTQLKL---PGQAPSSRCGHTIT-SGGHY-LLLFGGHG 254 (483)
Q Consensus 210 ~~~~~yd~~~~~W~~~~~---~g~~p~~r~~~~~~-~~~~~-i~v~GG~~ 254 (483)
-.+.....+.-+|..+.. .|.....-.+...+ +-++. -|+|||.+
T Consensus 433 ~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd 482 (670)
T 3ju4_A 433 LNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGED 482 (670)
T ss_dssp EETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBC
T ss_pred eecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcc
Confidence 123334556677877652 23334444444444 44554 46789864
No 236
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=66.55 E-value=75 Score=28.70 Aligned_cols=57 Identities=9% Similarity=0.014 Sum_probs=33.5
Q ss_pred cEEEEECCCCeEEEeecCCCCCCCC-cccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCCceEE
Q 011542 103 DFWVLDTDIWQWSELTSFGDLPSPR-DFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISLEWMQ 167 (483)
Q Consensus 103 ~~~~yd~~t~~W~~l~~~~~~p~~r-~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~ 167 (483)
.+.++|+.+.+-...-. .+... ..+.++.-.++ .+|+.+.. ...++++|+.+.+-..
T Consensus 12 ~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~s~dg~~l~v~~~~-----~~~v~~~d~~~~~~~~ 70 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVIT---IADAGPTPMVPMVAPGGRIAYATVNK-----SESLVKIDLVTGETLG 70 (337)
T ss_dssp EEEEEETTTTEEEEEEE---CTTCTTCCCCEEECTTSSEEEEEETT-----TTEEEEEETTTCCEEE
T ss_pred eEEEEECCCCcEEEEEE---cCCCCCCccceEEcCCCCEEEEEeCC-----CCeEEEEECCCCCeEe
Confidence 58899998876544332 22211 12334444444 67777643 3468999998887554
No 237
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=65.55 E-value=1.1e+02 Score=30.27 Aligned_cols=153 Identities=10% Similarity=0.100 Sum_probs=74.0
Q ss_pred EEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCC---CCCCCCcccEEEEE-CCcEEEEEecCCCCcCCccEE
Q 011542 81 IAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFG---DLPSPRDFAAASAI-GNRKIVMYGGWDGKKWLSDVY 156 (483)
Q Consensus 81 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~---~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~ 156 (483)
+++.+++++|+|-|. -+|+++.....+....... .+|... . ++... .++++|+|=|. .+|
T Consensus 267 Ai~~~~ge~y~Fkg~-------~~wr~~~~~~~~~p~~I~~~Wp~LP~~i-D-Aa~~~~~~g~~~fFKg~-------~~W 330 (450)
T 1su3_A 267 AITTIRGEVMFFKDR-------FYMRTNPFYPEVELNFISVFWPQLPNGL-E-AAYEFADRDEVRFFKGN-------KYW 330 (450)
T ss_dssp EEEEETTEEEEEETT-------EEEECCTTSSSCEEEEGGGTCTTSCSSC-C-EEEEEGGGTEEEEEETT-------EEE
T ss_pred eEEecCCeEEEEeCC-------EEEEEcCCCCcccceehhHhccCCCCCe-e-EEEEEcCCCeEEEEeCC-------EEE
Confidence 455679999999763 3666665443332221111 234322 2 22223 25689999762 467
Q ss_pred EEECCCC---ceEEec-cCCCCCC-CCcCceEEEe--CCEEEEEccCCCCCCcccceecccccccccCCCCCe-----EE
Q 011542 157 VLDTISL---EWMQLP-VTGSVPP-PRCGHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGW-----TQ 224 (483)
Q Consensus 157 ~yd~~t~---~W~~i~-~~~~~p~-~r~~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W-----~~ 224 (483)
+|+..+. -=..+. ..+ .|. +..--++... ++++|+|-| +..+.||..+.+- ..
T Consensus 331 ~~~~~~~~~gyP~~i~~~~g-~P~~~~~IDAA~~~~~~~k~yfFkG--------------~~yw~yd~~~~~~~~gYPk~ 395 (450)
T 1su3_A 331 AVQGQNVLHGYPKDIYSSFG-FPRTVKHIDAALSEENTGKTYFFVA--------------NKYWRYDEYKRSMDPGYPKM 395 (450)
T ss_dssp EEETTEECTTCSEEHHHHHC-CCTTCCCCCEEEEETTTTEEEEEET--------------TEEEEEETTTTEECSSCSEE
T ss_pred EecCCcccCCCceeeehhhc-CCCCCCccceEEEEcCCCeEEEEeC--------------CEEEEEeCCCccccCCCCcc
Confidence 7764320 001111 001 221 1111223333 579999977 2233444432211 11
Q ss_pred ec--cCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEE
Q 011542 225 LK--LPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKR 281 (483)
Q Consensus 225 ~~--~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 281 (483)
+. -+| .| .... +++..++++|+|-| +..|+||..+.+-..
T Consensus 396 I~~~fpg-ip-~~iD-AA~~~~g~~YFFkg--------------~~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 396 IAHDFPG-IG-HKVD-AVFMKDGFFYFFHG--------------TRQYKFDPKTKRILT 437 (450)
T ss_dssp HHHHSTT-SC-SCCS-EEEEETTEEEEEET--------------TEEEEEETTTTEEEE
T ss_pred hhhcCCC-CC-CCcc-EEEEcCCeEEEEeC--------------CEEEEEECCcceEec
Confidence 11 111 22 1222 44457889999977 457999987766443
No 238
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=65.31 E-value=72 Score=28.06 Aligned_cols=66 Identities=21% Similarity=0.318 Sum_probs=35.7
Q ss_pred eEEEEECCEEEEEccccCCCCCccEEEEECCCC-eEE--EeecC-CCCCCCCcccEEEEECCcEEEEEecCCCCcCCccE
Q 011542 80 HIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIW-QWS--ELTSF-GDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDV 155 (483)
Q Consensus 80 h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~-~W~--~l~~~-~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v 155 (483)
-+++.+++++|+|=|. .+|+++.... ... .+... ..+|. ....+.....++++|+|-| +..
T Consensus 34 DAi~~~~g~~~fFkg~-------~~Wr~~~~~~~~~~P~~I~~~wp~lp~-~IDAA~~~~~~~k~yfFkG-------~~y 98 (218)
T 1gen_A 34 DGIAQIRGEIFFFKDR-------FIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG-------NEY 98 (218)
T ss_dssp SEEEEETTEEEEEETT-------EEEEESSTTSCCEEEEEGGGTCTTSCS-CCSEEEEETTTTEEEEEET-------TEE
T ss_pred eEEEeCCCcEEEEECC-------EEEEEeCCCCccCCCEEHHHhcCCCCC-CccEEEEECCCCEEEEEeC-------CEE
Confidence 3455678999999762 3677765432 121 12211 12343 2222222224569999976 457
Q ss_pred EEEEC
Q 011542 156 YVLDT 160 (483)
Q Consensus 156 ~~yd~ 160 (483)
|+||.
T Consensus 99 W~y~~ 103 (218)
T 1gen_A 99 WIYSA 103 (218)
T ss_dssp EEEET
T ss_pred EEEcC
Confidence 88885
No 239
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=65.11 E-value=99 Score=29.60 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=15.6
Q ss_pred cceeEEEECCcEEEEEccc
Q 011542 21 SGHSAVNIGKSKVVVFGGL 39 (483)
Q Consensus 21 ~~h~~~~~~~~~l~v~GG~ 39 (483)
..|++++..++.||.+|--
T Consensus 116 ~~h~~al~~~G~v~~wG~n 134 (389)
T 3kci_A 116 GKHCLALSSEGEVYSWGEA 134 (389)
T ss_dssp CSEEEEEETTSCEEEEECC
T ss_pred CCeEEEEcCCCCEEEEeCC
Confidence 3588888889999999953
No 240
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=64.50 E-value=40 Score=30.98 Aligned_cols=95 Identities=6% Similarity=0.060 Sum_probs=46.5
Q ss_pred eeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEE
Q 011542 79 FHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVL 158 (483)
Q Consensus 79 ~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y 158 (483)
.|++++.++.+|.+|--.... +.. =.........+.. -..|+++. .++++|..|-......-...
T Consensus 151 ~~~~~l~~G~v~~wG~n~~gq-lg~---p~~~~~~v~~i~~-------G~~hs~al-~~G~v~~wG~n~~gqlg~p~--- 215 (282)
T 3qhy_B 151 YTALAVKNGGVIAWGDNYFGQ-TTV---PAEAQSGVDDVAG-------GIFHSLAL-KDGKVIAWGDNRYKQTTVPT--- 215 (282)
T ss_dssp SEEEEEETTEEEEEECCTTST-TSC---CGGGGSSEEEEEE-------CSSEEEEE-ETTEEEEEECCTTSTTCCCG---
T ss_pred CEEEEEECCEEEEecCCCCCC-CCC---ceecCCCeEEEEe-------cCCEEEEE-ECCeEEEEECCCCCCCCCCc---
Confidence 466666688899988543211 110 0000122334432 23567777 78899999854322110000
Q ss_pred ECCCCceEEeccCCCCCCCCcCceEEEeCCEEEEEccC
Q 011542 159 DTISLEWMQLPVTGSVPPPRCGHTATMVEKRLLIYGGR 196 (483)
Q Consensus 159 d~~t~~W~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~ 196 (483)
........+. .-..|+++..++++|..|-.
T Consensus 216 -~~~~~v~~i~-------~G~~h~~al~~g~v~~wG~n 245 (282)
T 3qhy_B 216 -EALSGVSAIA-------SGEWYSLALKNGKVIAWGSS 245 (282)
T ss_dssp -GGGSSCCEEE-------ECSSCEEEEETTEEEEESTT
T ss_pred -ccCCCceEEE-------cCCCEEEEEECCEEEEecCC
Confidence 0001122221 12345555558899999864
No 241
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=63.57 E-value=63 Score=32.03 Aligned_cols=139 Identities=12% Similarity=0.056 Sum_probs=68.7
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCCCCccEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRRLGDFWV 106 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~~~~~~~ 106 (483)
.++.+|+|=| ..+|+++.....+......... +.+|. .--++... ++++|+|=|. .+|+
T Consensus 271 ~~ge~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~W---p~LP~--~iDAa~~~~~~g~~~fFKg~-------~~W~ 331 (450)
T 1su3_A 271 IRGEVMFFKD-------RFYMRTNPFYPEVELNFISVFW---PQLPN--GLEAAYEFADRDEVRFFKGN-------KYWA 331 (450)
T ss_dssp ETTEEEEEET-------TEEEECCTTSSSCEEEEGGGTC---TTSCS--SCCEEEEEGGGTEEEEEETT-------EEEE
T ss_pred cCCeEEEEeC-------CEEEEEcCCCCcccceehhHhc---cCCCC--CeeEEEEEcCCCeEEEEeCC-------EEEE
Confidence 3478999887 3467777665544433222111 11222 12233332 6899999662 4788
Q ss_pred EECCCC--eE-EEeecCCCCCCC--CcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceE-----EeccC-CCCC
Q 011542 107 LDTDIW--QW-SELTSFGDLPSP--RDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWM-----QLPVT-GSVP 175 (483)
Q Consensus 107 yd~~t~--~W-~~l~~~~~~p~~--r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~-----~i~~~-~~~p 175 (483)
|+..+- .+ ..+...-.+|.. ....+...-.++++|+|-| +..|+||..+.+-. .+... ..+|
T Consensus 332 ~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG-------~~yw~yd~~~~~~~~gYPk~I~~~fpgip 404 (450)
T 1su3_A 332 VQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHDFPGIG 404 (450)
T ss_dssp EETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHHSTTSC
T ss_pred ecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCCC
Confidence 874320 00 111100023331 2222222224579999976 46899997654322 11100 0122
Q ss_pred CCCcCceEEEeCCEEEEEcc
Q 011542 176 PPRCGHTATMVEKRLLIYGG 195 (483)
Q Consensus 176 ~~r~~~~~~~~~~~lyv~GG 195 (483)
..-.+++..++++|+|-|
T Consensus 405 --~~iDAA~~~~g~~YFFkg 422 (450)
T 1su3_A 405 --HKVDAVFMKDGFFYFFHG 422 (450)
T ss_dssp --SCCSEEEEETTEEEEEET
T ss_pred --CCccEEEEcCCeEEEEeC
Confidence 222344456889999977
No 242
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=62.77 E-value=98 Score=32.29 Aligned_cols=119 Identities=14% Similarity=0.083 Sum_probs=63.5
Q ss_pred CcEEEEEecCCCCcCCccEEEEECCCCc--eEEeccCCCC--CCC---CcCceEEEeCCEEEEEccCCCCCCcccceecc
Q 011542 137 NRKIVMYGGWDGKKWLSDVYVLDTISLE--WMQLPVTGSV--PPP---RCGHTATMVEKRLLIYGGRGGGGPIMGDLWAL 209 (483)
Q Consensus 137 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~i~~~~~~--p~~---r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l 209 (483)
++.||+... ...++.+|..|++ |+.-...... ... ....+.++.++++|+....
T Consensus 66 ~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d------------- 126 (668)
T 1kv9_A 66 DGVIYTSMS------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLD------------- 126 (668)
T ss_dssp TTEEEEEEG------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTT-------------
T ss_pred CCEEEEECC------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCC-------------
Confidence 559998764 3468999988765 8864311100 000 0122345568888885421
Q ss_pred cccccccCCCC--CeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCC--ceEEc
Q 011542 210 KGLIEEENETP--GWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSA--QWKRL 282 (483)
Q Consensus 210 ~~~~~yd~~~~--~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~v 282 (483)
..+..+|.++. .|+.-... .........+.++.++.+|+-.+.... .....++.||..+. .|+.-
T Consensus 127 g~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~~~~v~vg~~~~~~-------~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 127 GRLIALDAKTGKAIWSQQTTD-PAKPYSITGAPRVVKGKVIIGNGGAEY-------GVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp SEEEEEETTTCCEEEEEECSC-TTSSCBCCSCCEEETTEEEECCBCTTT-------CCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEECCCCCEeeeeccCC-CCCcceecCCCEEECCEEEEeCCCCCc-------CCCCEEEEEECCCCcEEEEec
Confidence 23445577655 47764311 111112223345678887774322111 13467999998765 48763
No 243
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=62.58 E-value=82 Score=27.76 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=57.3
Q ss_pred eEEEE-CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCc
Q 011542 24 SAVNI-GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLG 102 (483)
Q Consensus 24 ~~~~~-~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~ 102 (483)
-++.. .++.+|+|=| +.+|+++.....+........ -+.+|. ... ++...++++|+|=| +
T Consensus 21 DAi~~~~~g~~yfFkg-------~~~Wr~~~~~~~~~p~~Is~~---wpgLP~-~ID-AA~~~~~~~yfFkG-------~ 81 (219)
T 1hxn_A 21 SAMVSDNHGATYVFSG-------SHYWRLDTNRDGWHSWPIAHQ---WPQGPS-TVD-AAFSWEDKLYLIQD-------T 81 (219)
T ss_dssp CEEEECTTSCEEEEET-------TEEEESSSSSCTTCCEEGGGT---CTTSCS-SCS-EEEEETTEEEEEET-------T
T ss_pred eEEEECCCCcEEEEeC-------CEEEEEcCCCCCCCceEhhhh---ccCCCC-Ccc-EEEEECCcEEEecC-------C
Confidence 34443 4678898877 356777654433322111111 012232 222 33345899999966 3
Q ss_pred cEEEEECCCC-eE-----EEeecCCCCCCC--CcccEEEE-E-CCcEEEEEecCCCCcCCccEEEEECCC
Q 011542 103 DFWVLDTDIW-QW-----SELTSFGDLPSP--RDFAAASA-I-GNRKIVMYGGWDGKKWLSDVYVLDTIS 162 (483)
Q Consensus 103 ~~~~yd~~t~-~W-----~~l~~~~~~p~~--r~~~~~~~-~-~~~~iyv~GG~~~~~~~~~v~~yd~~t 162 (483)
.+|+|+..++ +- +.+...-++|.. ...--++. . .++++|+|-| +..|+||..+
T Consensus 82 ~yw~~~~~~~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~ 144 (219)
T 1hxn_A 82 KVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG-------RRLWWLDLKS 144 (219)
T ss_dssp EEEEEECSSSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET-------TEEEEEEGGG
T ss_pred EEEEEeCCCCceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeC-------CEEEEEeCCC
Confidence 5899987532 11 111110123433 11122233 2 4579999977 3578898654
No 244
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=62.44 E-value=1.1e+02 Score=29.39 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=14.5
Q ss_pred cccEEEEECCcEEEEEec
Q 011542 128 DFAAASAIGNRKIVMYGG 145 (483)
Q Consensus 128 ~~~~~~~~~~~~iyv~GG 145 (483)
..|++++..++.+|..|-
T Consensus 182 ~~hs~alt~~G~v~~wG~ 199 (406)
T 4d9s_A 182 AEHTAAVTEDGDLYGWGW 199 (406)
T ss_dssp SSEEEEEETTSCEEEEEC
T ss_pred CCeEEEEeCCCCEEEeeC
Confidence 457888888889999984
No 245
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=61.47 E-value=76 Score=32.91 Aligned_cols=109 Identities=8% Similarity=0.012 Sum_probs=57.1
Q ss_pred ceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCC----CCCccEEEEECCCCeEEEeecCCC
Q 011542 47 DVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGS----RRLGDFWVLDTDIWQWSELTSFGD 122 (483)
Q Consensus 47 ~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~----~~~~~~~~yd~~t~~W~~l~~~~~ 122 (483)
.++++|+.+++-..+..... ............-+++.++++..... .....++++|+.+++-.++.....
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~------~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 111 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKK------IESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV 111 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTT------TTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC
T ss_pred CEEEEECCCCcEEEEecccc------ccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcc
Confidence 68899998887655432110 00001222223335565555543321 123679999999887655553111
Q ss_pred CCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEec
Q 011542 123 LPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLP 169 (483)
Q Consensus 123 ~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~ 169 (483)
.... ....+.-.|++.++++.. ..++++|..+++-.++.
T Consensus 112 -~~~~-~~~~~~SPdG~~la~~~~------~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 112 -SNAK-LQYAGWGPKGQQLIFIFE------NNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp -CSCC-CSBCCBCSSTTCEEEEET------TEEEEESSSSSCCEEEE
T ss_pred -cccc-ccccEECCCCCEEEEEEC------CeEEEEECCCCceEEEe
Confidence 0001 111222234545555542 46999999988877775
No 246
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=61.21 E-value=98 Score=28.23 Aligned_cols=106 Identities=9% Similarity=-0.007 Sum_probs=51.2
Q ss_pred cEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe--CCEEEEEccCCCCCCcccceecccccccc
Q 011542 138 RKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEE 215 (483)
Q Consensus 138 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~y 215 (483)
+.+++.|+.++ .+.+||+.+.+-...-. .. ...-.++... ++.+++.|+.. ..+..|
T Consensus 85 ~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~--~~--~~~i~~~~~~~~~~~~l~s~~~d------------g~i~iw 143 (366)
T 3k26_A 85 HPLLAVAGSRG-----IIRIINPITMQCIKHYV--GH--GNAINELKFHPRDPNLLLSVSKD------------HALRLW 143 (366)
T ss_dssp CEEEEEEETTC-----EEEEECTTTCCEEEEEE--SC--CSCEEEEEECSSCTTEEEEEETT------------SCEEEE
T ss_pred CCEEEEecCCC-----EEEEEEchhceEeeeec--CC--CCcEEEEEECCCCCCEEEEEeCC------------CeEEEE
Confidence 47888887643 58888988765433210 11 1111222333 45667777653 234456
Q ss_pred cCCCCCeEEeccCCCCCCCCeeeEEEE-eCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCC
Q 011542 216 ENETPGWTQLKLPGQAPSSRCGHTITS-GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSA 277 (483)
Q Consensus 216 d~~~~~W~~~~~~g~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 277 (483)
|+.+.+-...-.. .......-.+++. -++..++.|+.+ ..+.+||+.+.
T Consensus 144 d~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~ 193 (366)
T 3k26_A 144 NIQTDTLVAIFGG-VEGHRDEVLSADYDLLGEKIMSCGMD------------HSLKLWRINSK 193 (366)
T ss_dssp ETTTTEEEEEECS-TTSCSSCEEEEEECTTSSEEEEEETT------------SCEEEEESCSH
T ss_pred EeecCeEEEEecc-cccccCceeEEEECCCCCEEEEecCC------------CCEEEEECCCC
Confidence 7766543332200 0111111222333 234556666543 34778887654
No 247
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=60.66 E-value=88 Score=27.49 Aligned_cols=144 Identities=13% Similarity=0.154 Sum_probs=69.3
Q ss_pred eEEEECCcEEEEEcccCCCccccceEEEEcCCC-cEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCCC
Q 011542 24 SAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNK-LWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRR 100 (483)
Q Consensus 24 ~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~ 100 (483)
+++.+ ++.+|+|=| +.+|+++.... .......... -+.+|. ... ++... ++++|+|=|
T Consensus 35 Ai~~~-~g~~~fFkg-------~~~Wr~~~~~~~~~~P~~I~~~---wp~lp~-~ID-AA~~~~~~~k~yfFkG------ 95 (218)
T 1gen_A 35 GIAQI-RGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATF---WPELPE-KID-AVYEAPQEEKAVFFAG------ 95 (218)
T ss_dssp EEEEE-TTEEEEEET-------TEEEEESSTTSCCEEEEEGGGT---CTTSCS-CCS-EEEEETTTTEEEEEET------
T ss_pred EEEeC-CCcEEEEEC-------CEEEEEeCCCCccCCCEEHHHh---cCCCCC-Ccc-EEEEECCCCEEEEEeC------
Confidence 33334 578888877 35777766542 2222211111 112222 222 23332 579999966
Q ss_pred CccEEEEECCCCe--E-EEeecCCCCCCCC-cccEEEEE-CCcEEEEEecCCCCcCCccEEEEECCCCceEEecc---C-
Q 011542 101 LGDFWVLDTDIWQ--W-SELTSFGDLPSPR-DFAAASAI-GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPV---T- 171 (483)
Q Consensus 101 ~~~~~~yd~~t~~--W-~~l~~~~~~p~~r-~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~---~- 171 (483)
+.+|+||..+.. + ..|... .+|... .--++... .++++|+|-| +..|+||..+++-...-+ .
T Consensus 96 -~~yW~y~~~~~~~gyPk~I~~~-g~p~~~~~IDAAf~~~~~g~~YfFkG-------~~ywr~d~~~~~v~~gyPr~i~~ 166 (218)
T 1gen_A 96 -NEYWIYSASTLERGYPKPLTSL-GLPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIAD 166 (218)
T ss_dssp -TEEEEEETTEECTTCSEEGGGG-TCCTTCCCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCEEHHH
T ss_pred -CEEEEEcCccccCCCCccHhhc-CCCCCcCCccEEEEEcCCCeEEEEEC-------CEEEEEECccccccCCCCcchhh
Confidence 358999852100 0 111111 233321 11222222 5679999976 358999987763221100 0
Q ss_pred CCCCCCCcCceEEEeC--CEEEEEcc
Q 011542 172 GSVPPPRCGHTATMVE--KRLLIYGG 195 (483)
Q Consensus 172 ~~~p~~r~~~~~~~~~--~~lyv~GG 195 (483)
.-+..+..-.++...+ +++|+|-|
T Consensus 167 ~w~g~p~~idaAf~~~~~g~~YfFkg 192 (218)
T 1gen_A 167 AWNAIPDNLDAVVDLQGGGHSYFFKG 192 (218)
T ss_dssp HSSSCCSSCSEEEECTTTCEEEEEET
T ss_pred ccCCCCCCCCEEEEEcCCCcEEEEEC
Confidence 0011122233444444 79999977
No 248
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=59.66 E-value=1.3e+02 Score=29.04 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=16.2
Q ss_pred cceeEEEECCcEEEEEccc
Q 011542 21 SGHSAVNIGKSKVVVFGGL 39 (483)
Q Consensus 21 ~~h~~~~~~~~~l~v~GG~ 39 (483)
..|++++..++.||.+|--
T Consensus 25 ~~hs~al~~~g~v~~wG~n 43 (406)
T 4d9s_A 25 ASHSVALLSGDIVCSWGRG 43 (406)
T ss_dssp SSEEEEEETTTEEEEEECC
T ss_pred CCeEEEEEeCCEEEEEeCC
Confidence 4699999999999999954
No 249
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=58.23 E-value=1.1e+02 Score=27.88 Aligned_cols=109 Identities=11% Similarity=0.035 Sum_probs=53.7
Q ss_pred ECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE-ECCEEEEEccccCCCCCccEEE
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSRRLGDFWV 106 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~~iyv~GG~~~~~~~~~~~~ 106 (483)
..++..++.|+.+ ..+.+||+.+++-...-. ..... -.+++. -++.+++.|+.++ .+.+
T Consensus 74 s~dg~~l~s~s~D-----~~v~~wd~~~~~~~~~~~---------~h~~~-v~~~~~~~~~~~l~s~s~D~-----~i~v 133 (319)
T 3frx_A 74 TADGAYALSASWD-----KTLRLWDVATGETYQRFV---------GHKSD-VMSVDIDKKASMIISGSRDK-----TIKV 133 (319)
T ss_dssp CTTSSEEEEEETT-----SEEEEEETTTTEEEEEEE---------CCSSC-EEEEEECTTSCEEEEEETTS-----CEEE
T ss_pred CCCCCEEEEEeCC-----CEEEEEECCCCCeeEEEc---------cCCCc-EEEEEEcCCCCEEEEEeCCC-----eEEE
Confidence 3456666667654 347889988875322110 11111 112222 2456777777554 3677
Q ss_pred EECCCCeEEEeecCCCCCCCCcccEEEEEC------CcEEEEEecCCCCcCCccEEEEECCCCceE
Q 011542 107 LDTDIWQWSELTSFGDLPSPRDFAAASAIG------NRKIVMYGGWDGKKWLSDVYVLDTISLEWM 166 (483)
Q Consensus 107 yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~------~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 166 (483)
+|.....-..+.. ....-.++.... ++.+++.|+.++ .+..+|+.+.+-.
T Consensus 134 wd~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~ 189 (319)
T 3frx_A 134 WTIKGQCLATLLG-----HNDWVSQVRVVPNEKADDDSVTIISAGNDK-----MVKAWNLNQFQIE 189 (319)
T ss_dssp EETTSCEEEEECC-----CSSCEEEEEECCC------CCEEEEEETTS-----CEEEEETTTTEEE
T ss_pred EECCCCeEEEEec-----cCCcEEEEEEccCCCCCCCccEEEEEeCCC-----EEEEEECCcchhh
Confidence 8876554333321 111111222221 223566666543 4778888776543
No 250
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=58.20 E-value=1.8e+02 Score=30.37 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=21.1
Q ss_pred ECCcEEEEEcccCCC----ccccceEEEEcCCCcEEeee
Q 011542 28 IGKSKVVVFGGLVDK----RFLSDVVVYDIDNKLWFQPE 62 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~----~~~~~~~~yd~~~~~W~~~~ 62 (483)
..|++.++++..+.. ....++++||..+++-..+.
T Consensus 70 Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~ 108 (740)
T 4a5s_A 70 SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEE 108 (740)
T ss_dssp CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS
T ss_pred CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcc
Confidence 445565555543211 12367899999998866554
No 251
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=57.69 E-value=1.7e+02 Score=29.99 Aligned_cols=73 Identities=10% Similarity=0.091 Sum_probs=39.8
Q ss_pred EEEEcccCCCccccceEEEEcCCCc--EEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECC
Q 011542 33 VVVFGGLVDKRFLSDVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTD 110 (483)
Q Consensus 33 l~v~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 110 (483)
||+... -..++++|..+++ |+.-... .........+-++.++.||+-.+......-..++.||+.
T Consensus 124 V~v~t~------dg~l~AlDa~TG~~~W~~~~~~-------~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~ 190 (599)
T 1w6s_A 124 ILKTQL------DGNVAALNAETGETVWKVENSD-------IKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVK 190 (599)
T ss_dssp EEEECT------TSEEEEEETTTCCEEEEEECCC-------GGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETT
T ss_pred EEEEcC------CCEEEEEECCCCCEEEeecCCC-------CCccceeecCCEEECCEEEEEecccccCCCCeEEEEECC
Confidence 777532 1468999998874 8753211 000001122334568888765432111123468999998
Q ss_pred CCe--EEEee
Q 011542 111 IWQ--WSELT 118 (483)
Q Consensus 111 t~~--W~~l~ 118 (483)
|++ |+.-.
T Consensus 191 TG~~~W~~~~ 200 (599)
T 1w6s_A 191 TGEQVWRAYA 200 (599)
T ss_dssp TCCEEEEEES
T ss_pred CCcEEEEEcC
Confidence 875 87543
No 252
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=57.37 E-value=1.5e+02 Score=29.20 Aligned_cols=19 Identities=21% Similarity=0.088 Sum_probs=16.1
Q ss_pred cceeEEEECCcEEEEEccc
Q 011542 21 SGHSAVNIGKSKVVVFGGL 39 (483)
Q Consensus 21 ~~h~~~~~~~~~l~v~GG~ 39 (483)
..|++++..++.||.+|--
T Consensus 76 ~~Ht~alt~~G~v~~wG~n 94 (473)
T 3of7_A 76 GMHTLALDEESNVWSWGCN 94 (473)
T ss_dssp SSEEEEEETTCCEEEEECC
T ss_pred CCeEEEEecCCeEEEeECC
Confidence 4688898899999999954
No 253
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=57.32 E-value=1.1e+02 Score=29.15 Aligned_cols=109 Identities=12% Similarity=0.078 Sum_probs=56.0
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCC--eE-EEeecCCCCCCC--CcccEEEEE-CCcEEEEEecCCCCcCCccEEEEE
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIW--QW-SELTSFGDLPSP--RDFAAASAI-GNRKIVMYGGWDGKKWLSDVYVLD 159 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~--~W-~~l~~~~~~p~~--r~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd 159 (483)
++++|+|-| +.+|+|+.... .+ ..+... .+|.. ... ++... .++++|+|-| +..|+||
T Consensus 236 ~g~~~fFkg-------~~yWr~~~~~~~~gyPk~I~~~-GlP~~~~~ID-AA~~~~~~~~~yfFkG-------~~yw~yd 299 (365)
T 3ba0_A 236 RNQVFLFKD-------DKYWLISNLRPEPNYPKSIHSF-GFPNFVKKID-AAVFNPRFYRTYFFVD-------NQYWRYD 299 (365)
T ss_dssp GTEEEEEET-------TEEEECSTTSCTTTCSEETTTT-TCCTTCCCCC-EEEEETTTTEEEEEET-------TEEEEEE
T ss_pred CCEEEEEeC-------CEEEEEcCCcccCCCCceeeec-cCCCCCCCcC-EEEEeCCCCEEEEEEC-------CEEEEEe
Confidence 789999966 24777765321 11 122211 24442 222 22233 3569999976 4589999
Q ss_pred CCCCceEEeccC----CCCCCCCcCceEEEe-CCEEEEEccCCCCCCcccceecccccccccCCCCCeEE
Q 011542 160 TISLEWMQLPVT----GSVPPPRCGHTATMV-EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQ 224 (483)
Q Consensus 160 ~~t~~W~~i~~~----~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~ 224 (483)
..+.+-..--+. +-+..+..-.++... ++++|+|-| +..+.||..+.+-..
T Consensus 300 ~~~~~v~~gyPk~I~~~f~g~p~~iDaA~~~~~g~~YfFkg--------------~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 300 ERRQMMDPGYPKLITKNFQGIGPKIDAVFYSKNKYYYFFQG--------------SNQFEYDFLLQRITK 355 (365)
T ss_dssp TTTTEECSSCCCCHHHHSTTCCSSCSEEEEETTTEEEEEET--------------TEEEEEETTTTEEEE
T ss_pred CCcceecCCCCcchhhcCCCCCCccceeeEecCCcEEEEeC--------------CEEEEEECCccEEec
Confidence 876542210000 001112222344444 789999977 334556766655443
No 254
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=57.30 E-value=1.8e+02 Score=30.03 Aligned_cols=66 Identities=11% Similarity=0.017 Sum_probs=32.3
Q ss_pred cEEEEECCCCe---EEEeecCCCCC-CCCcccEEEEECCcEEEEEecCCCCcCCccEEEEE----CCCCceEEec
Q 011542 103 DFWVLDTDIWQ---WSELTSFGDLP-SPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLD----TISLEWMQLP 169 (483)
Q Consensus 103 ~~~~yd~~t~~---W~~l~~~~~~p-~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd----~~t~~W~~i~ 169 (483)
.++++|+.+++ |.++.....+. ........+...|+++++.... .......++.+| +.++++..+.
T Consensus 225 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~-~~~~~~~l~~~d~~~~~~~g~~~~~~ 298 (719)
T 1z68_A 225 RIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLK-RVQNVSVLSICDFREDWQTWDCPKTQ 298 (719)
T ss_dssp EEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEE-SSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred EEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEec-cccCeEEEEEEcccCCCCCCceEEEE
Confidence 68888988765 23332100000 1111122222345676665321 112235689999 8777766543
No 255
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=57.30 E-value=1.4e+02 Score=28.79 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=15.4
Q ss_pred cceeEEEECCcEEEEEcc
Q 011542 21 SGHSAVNIGKSKVVVFGG 38 (483)
Q Consensus 21 ~~h~~~~~~~~~l~v~GG 38 (483)
..|++++..++.||.+|-
T Consensus 136 ~~hs~al~~~G~v~~wG~ 153 (423)
T 3mvd_K 136 DSHSACLLEDGRVFAWGS 153 (423)
T ss_dssp SSEEEEEETTSCEEEEEC
T ss_pred cCeEEEEeCCCeEEEEeC
Confidence 368888888999999994
No 256
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=56.67 E-value=1.2e+02 Score=27.69 Aligned_cols=173 Identities=10% Similarity=0.076 Sum_probs=85.8
Q ss_pred cceeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCC
Q 011542 21 SGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRR 100 (483)
Q Consensus 21 ~~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~ 100 (483)
..|++++. ++.||.+|--..++.--.. ........++ .-..|++++.+++||.+|--... .
T Consensus 33 ~~h~~~l~-~G~v~~wG~n~~Gqlg~p~----~~~~~i~~ia-------------~G~~hs~~l~~G~v~~wG~n~~G-q 93 (282)
T 3qhy_B 33 YFHGLALK-GGKVLGWGANLNGQLTMPA----ATQSGVDAIA-------------AGNYHSLALKDGEVIAWGGNEDG-Q 93 (282)
T ss_dssp SSEEEEEE-TTEEEEEECCSSSTTSCCG----GGGSCCCEEE-------------ECSSEEEEEETTEEEEEECCTTS-T
T ss_pred CCeEEEEE-CCEEEEEeCCCCCCCCCCc----cCCCCEEEEE-------------eCCCEEEEEECCEEEEeeCCCCC-C
Confidence 35777776 8999999954333221000 0001112221 12357777778899999954321 1
Q ss_pred CccEEEEECC--CCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCC
Q 011542 101 LGDFWVLDTD--IWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPR 178 (483)
Q Consensus 101 ~~~~~~yd~~--t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r 178 (483)
+.. |. ......+.. -..|+++.. ++++|..|-...... . + -.........+. .-
T Consensus 94 lg~-----P~~~~~~v~~ia~-------G~~hs~al~-~G~v~~wG~n~~gql-g-~--~~~~~~~i~~i~-------~G 149 (282)
T 3qhy_B 94 TTV-----PAEARSGVDAIAA-------GAWASYALK-DGKVIAWGDDSDGQT-T-V--PAEAQSGVTALD-------GG 149 (282)
T ss_dssp TCC-----CGGGSSSEEEEEE-------ETTEEEEEE-TTEEEEEECCTTSTT-S-C--CGGGGSSEEEEE-------EC
T ss_pred CCC-----CcccCCCeEEEEC-------cCCEEEEEe-CCeEEEecCCCCCcC-C-C--CccCCCCeEEEE-------cc
Confidence 110 00 112333332 235777777 889999985332211 0 0 000011223332 12
Q ss_pred cCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCC
Q 011542 179 CGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHG 254 (483)
Q Consensus 179 ~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~ 254 (483)
..|+++..++.+|.+|-..... ...+ .........+. ....|++++.++++|.+|-..
T Consensus 150 ~~~~~~l~~G~v~~wG~n~~gq-lg~p----------~~~~~~v~~i~-------~G~~hs~al~~G~v~~wG~n~ 207 (282)
T 3qhy_B 150 VYTALAVKNGGVIAWGDNYFGQ-TTVP----------AEAQSGVDDVA-------GGIFHSLALKDGKVIAWGDNR 207 (282)
T ss_dssp SSEEEEEETTEEEEEECCTTST-TSCC----------GGGGSSEEEEE-------ECSSEEEEEETTEEEEEECCT
T ss_pred cCEEEEEECCEEEEecCCCCCC-CCCc----------eecCCCeEEEE-------ecCCEEEEEECCeEEEEECCC
Confidence 3467666689999998643321 1000 00012344443 233566666788999998543
No 257
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=56.49 E-value=1.2e+02 Score=27.85 Aligned_cols=111 Identities=10% Similarity=-0.001 Sum_probs=57.2
Q ss_pred EEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccC--CCCCcc
Q 011542 26 VNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFG--SRRLGD 103 (483)
Q Consensus 26 ~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~--~~~~~~ 103 (483)
+...++.+++... +.+++||+.+++...+..... ..+..+.....+.-++++|+. .... ......
T Consensus 96 ~~~~dg~l~v~~~-------~gl~~~d~~~g~~~~~~~~~~-----~~~~~~~~~i~~d~~G~l~v~-~~~~~~~~~~~~ 162 (326)
T 2ghs_A 96 AKISDSKQLIASD-------DGLFLRDTATGVLTLHAELES-----DLPGNRSNDGRMHPSGALWIG-TMGRKAETGAGS 162 (326)
T ss_dssp EEEETTEEEEEET-------TEEEEEETTTCCEEEEECSST-----TCTTEEEEEEEECTTSCEEEE-EEETTCCTTCEE
T ss_pred EEeCCCeEEEEEC-------CCEEEEECCCCcEEEEeeCCC-----CCCCCCCCCEEECCCCCEEEE-eCCCcCCCCceE
Confidence 3345567766531 248999999998877653211 111122222222225677763 3221 122356
Q ss_pred EEEEECCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECC
Q 011542 104 FWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTI 161 (483)
Q Consensus 104 ~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~ 161 (483)
++++| +++...+.. ... .....+...++ .+|+.... .+.+++||..
T Consensus 163 l~~~~--~g~~~~~~~--~~~---~~~~i~~s~dg~~lyv~~~~-----~~~I~~~d~~ 209 (326)
T 2ghs_A 163 IYHVA--KGKVTKLFA--DIS---IPNSICFSPDGTTGYFVDTK-----VNRLMRVPLD 209 (326)
T ss_dssp EEEEE--TTEEEEEEE--EES---SEEEEEECTTSCEEEEEETT-----TCEEEEEEBC
T ss_pred EEEEe--CCcEEEeeC--CCc---ccCCeEEcCCCCEEEEEECC-----CCEEEEEEcc
Confidence 89999 566655532 111 11233333344 57776432 3568999975
No 258
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=56.21 E-value=54 Score=29.08 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=38.1
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEee--cCCCCCC------CCcccEEEEE-CCcEEEEEecCCCCcCCccEE
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELT--SFGDLPS------PRDFAAASAI-GNRKIVMYGGWDGKKWLSDVY 156 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~--~~~~~p~------~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~ 156 (483)
++++|+|-| +.+|+||..+++...-+ .....|. +..--++... .++++|+|-| +..|
T Consensus 127 ~gk~yfFkG-------~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG-------~~yw 192 (225)
T 3oyo_A 127 GKEVYLFKG-------NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG-------QNYV 192 (225)
T ss_dssp TTEEEEEET-------TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET-------TEEE
T ss_pred CCcEEEEeC-------CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC-------CEEE
Confidence 679999977 35899998777655311 0001221 1122233332 5679999976 3578
Q ss_pred EEECCC
Q 011542 157 VLDTIS 162 (483)
Q Consensus 157 ~yd~~t 162 (483)
+||..+
T Consensus 193 r~d~~~ 198 (225)
T 3oyo_A 193 RIDFTP 198 (225)
T ss_dssp EEECCT
T ss_pred EEeCCc
Confidence 999873
No 259
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=55.95 E-value=1.3e+02 Score=28.14 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=55.9
Q ss_pred EEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCc--ceeEEEE--ECCEEEEEccccCCCCCccEEEEE
Q 011542 33 VVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPR--AFHIAVA--IDCHMFIFGGRFGSRRLGDFWVLD 108 (483)
Q Consensus 33 l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R--~~h~~~~--~~~~iyv~GG~~~~~~~~~~~~yd 108 (483)
.++.|+.+ ..+.+||+.+++-...-.. ..+... .-.++.. .++.+++.|+.++ .+.++|
T Consensus 172 ~l~s~s~D-----~~i~~wd~~~~~~~~~~~~-------~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~-----~v~~wd 234 (380)
T 3iz6_a 172 RLITGSGD-----QTCVLWDVTTGQRISIFGS-------EFPSGHTADVLSLSINSLNANMFISGSCDT-----TVRLWD 234 (380)
T ss_dssp CEEEECTT-----SCEEEECTTTCCEEEEECC-------CSSSSCCSCEEEEEECSSSCCEEEEEETTS-----CEEEEE
T ss_pred EEEEECCC-----CcEEEEEcCCCcEEEEeec-------ccCCCCccCeEEEEeecCCCCEEEEEECCC-----eEEEEE
Confidence 45555543 3478889888765433211 111111 1112222 2567888887654 377888
Q ss_pred CCCC--eEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEe
Q 011542 109 TDIW--QWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQL 168 (483)
Q Consensus 109 ~~t~--~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i 168 (483)
+... .-..+.. ....-.+++...++..++.|+.++ .+.++|+.+++-...
T Consensus 235 ~~~~~~~~~~~~~-----h~~~v~~v~~~p~~~~l~s~s~D~-----~i~lwd~~~~~~~~~ 286 (380)
T 3iz6_a 235 LRITSRAVRTYHG-----HEGDINSVKFFPDGQRFGTGSDDG-----TCRLFDMRTGHQLQV 286 (380)
T ss_dssp TTTTCCCCEEECC-----CSSCCCEEEECTTSSEEEEECSSS-----CEEEEETTTTEEEEE
T ss_pred CCCCCcceEEECC-----cCCCeEEEEEecCCCeEEEEcCCC-----eEEEEECCCCcEEEE
Confidence 7632 1112210 111122334445667788887654 478889888765443
No 260
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=54.91 E-value=1.3e+02 Score=27.66 Aligned_cols=64 Identities=6% Similarity=-0.011 Sum_probs=33.1
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE-ECCEEEEEccccCCCCCccEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~~iyv~GG~~~~~~~~~~~~y 107 (483)
.++.+++.|+.+ ..+.++|..+.+....-. ..... -.+++. -+++.++.||.++ .+.++
T Consensus 86 ~~~~~l~s~s~D-----~~v~lwd~~~~~~~~~~~---------~h~~~-v~~v~~sp~~~~l~s~~~d~-----~i~~w 145 (343)
T 2xzm_R 86 QENCFAISSSWD-----KTLRLWDLRTGTTYKRFV---------GHQSE-VYSVAFSPDNRQILSAGAER-----EIKLW 145 (343)
T ss_dssp SSTTEEEEEETT-----SEEEEEETTSSCEEEEEE---------CCCSC-EEEEEECSSTTEEEEEETTS-----CEEEE
T ss_pred CCCCEEEEEcCC-----CcEEEEECCCCcEEEEEc---------CCCCc-EEEEEECCCCCEEEEEcCCC-----EEEEE
Confidence 445566666654 347888988776432211 11111 122222 2455666676543 46778
Q ss_pred ECCCC
Q 011542 108 DTDIW 112 (483)
Q Consensus 108 d~~t~ 112 (483)
|....
T Consensus 146 d~~~~ 150 (343)
T 2xzm_R 146 NILGE 150 (343)
T ss_dssp ESSSC
T ss_pred eccCC
Confidence 87644
No 261
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=54.52 E-value=2.1e+02 Score=30.07 Aligned_cols=88 Identities=11% Similarity=0.070 Sum_probs=45.9
Q ss_pred CccEEEEECCCC--eE--EEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCC-CceEE-eccCCCC
Q 011542 101 LGDFWVLDTDIW--QW--SELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTIS-LEWMQ-LPVTGSV 174 (483)
Q Consensus 101 ~~~~~~yd~~t~--~W--~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t-~~W~~-i~~~~~~ 174 (483)
.++++++|+.+. .+ ..+... ...+ .++.....++.||+..-.++ .....++.+|..+ ..|+. +-+ .
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~--~~~~--~~s~~~~~g~~l~~~t~~~~-a~~~~L~~~d~~~~~~~~~~li~---~ 365 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPR--EKGV--RYDVQMHGTSHLVILTNEGG-AVNHKLLIAPRGQPSDWSHVLVD---H 365 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCC--CTTC--CEEEEEETTTEEEEEECTTT-CTTCEEEEEETTSTTCCCCEEEC---C
T ss_pred CceEEEEECCCCCCCceeEEeecC--CCCc--eEEEeeeeCCEEEEEeCCCC-CCCcEEEEEcCCCcccceeeEEC---C
Confidence 467999999775 45 555421 1111 12221122458888875541 1245789999886 68876 431 1
Q ss_pred CCCCcCceEEEeCCEEEEEccC
Q 011542 175 PPPRCGHTATMVEKRLLIYGGR 196 (483)
Q Consensus 175 p~~r~~~~~~~~~~~lyv~GG~ 196 (483)
.....-......++.|++....
T Consensus 366 ~~~~~l~~~~~~~~~lv~~~~~ 387 (751)
T 2xe4_A 366 SEDVFMESIAVRSNYLVVAGRR 387 (751)
T ss_dssp CSSEEEEEEEECSSEEEEEEEE
T ss_pred CCCcEEEEEEEECCEEEEEEEe
Confidence 1111112233346777776543
No 262
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=54.39 E-value=1.4e+02 Score=27.92 Aligned_cols=76 Identities=9% Similarity=-0.018 Sum_probs=41.8
Q ss_pred EECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCC-CCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCC
Q 011542 84 AIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPS-PRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTIS 162 (483)
Q Consensus 84 ~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~-~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t 162 (483)
.-++..++.++.++.. ...++.+|............ .+.. ...-.+++.-.++++++.|+.++ .+.+||..+
T Consensus 228 spdg~~l~~~s~d~~~-~~~i~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~Spdg~~lasgs~D~-----~V~iwd~~~ 300 (365)
T 4h5i_A 228 IADDTVLIAASLKKGK-GIVLTKISIKSGNTSVLRSK-QVTNRFKGITSMDVDMKGELAVLASNDN-----SIALVKLKD 300 (365)
T ss_dssp EETTEEEEEEEESSSC-CEEEEEEEEETTEEEEEEEE-EEESSCSCEEEEEECTTSCEEEEEETTS-----CEEEEETTT
T ss_pred cCCCCEEEEEecCCcc-eeEEeecccccceecceeee-eecCCCCCeEeEEECCCCCceEEEcCCC-----EEEEEECCC
Confidence 3467777777655422 22466677766655433210 0111 11112333346678888888654 488899988
Q ss_pred CceE
Q 011542 163 LEWM 166 (483)
Q Consensus 163 ~~W~ 166 (483)
.+-.
T Consensus 301 ~~~~ 304 (365)
T 4h5i_A 301 LSMS 304 (365)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 7543
No 263
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=53.60 E-value=1.2e+02 Score=26.79 Aligned_cols=198 Identities=11% Similarity=-0.123 Sum_probs=103.8
Q ss_pred eeEEEE-CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCC
Q 011542 23 HSAVNI-GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSR 99 (483)
Q Consensus 23 h~~~~~-~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~ 99 (483)
|.+++. .++.||+.... .+.+++||+....-..+... ... .-+.+++. +++||+.-..
T Consensus 39 ~gi~~d~~~~~ly~~d~~-----~~~I~~~~~~g~~~~~~~~~---------~~~-~p~~ia~d~~~~~lyv~d~~---- 99 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTDIS-----EPSIGRASLHGGEPTTIIRQ---------DLG-SPEGIALDHLGRTIFWTDSQ---- 99 (267)
T ss_dssp EEEEEETTTTEEEEEETT-----TTEEEEEESSSCCCEEEECT---------TCC-CEEEEEEETTTTEEEEEETT----
T ss_pred EEEEEecCCCEEEEEECC-----CCEEEEEecCCCCcEEEEEC---------CCC-CccEEEEEecCCeEEEEECC----
Confidence 344443 35678887542 24689999887643333211 111 22445554 5789987532
Q ss_pred CCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEEC-CcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCC
Q 011542 100 RLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIG-NRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPR 178 (483)
Q Consensus 100 ~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r 178 (483)
.+.+.++|+....-..+... .+. .-..+++-. ++.||+..... ....++++++....-+.+.. ... .
T Consensus 100 -~~~I~~~~~~g~~~~~~~~~-~~~---~P~~i~vd~~~g~lyv~~~~~---~~~~I~~~~~dg~~~~~~~~-~~~---~ 167 (267)
T 1npe_A 100 -LDRIEVAKMDGTQRRVLFDT-GLV---NPRGIVTDPVRGNLYWTDWNR---DNPKIETSHMDGTNRRILAQ-DNL---G 167 (267)
T ss_dssp -TTEEEEEETTSCSCEEEECS-SCS---SEEEEEEETTTTEEEEEECCS---SSCEEEEEETTSCCCEEEEC-TTC---S
T ss_pred -CCEEEEEEcCCCCEEEEEEC-CCC---CccEEEEeeCCCEEEEEECCC---CCcEEEEEecCCCCcEEEEE-CCC---C
Confidence 24688999875443333221 111 112344443 56899975321 13568888886544333321 111 1
Q ss_pred cCceEEEe--CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEeCCEEEEEcCCCCC
Q 011542 179 CGHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSGGHYLLLFGGHGTG 256 (483)
Q Consensus 179 ~~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~~~~i~v~GG~~~~ 256 (483)
.-..+++. +++||+.-... +.+.++|++...-..+...+..| .++++.++.+|+....
T Consensus 168 ~P~gia~d~~~~~lyv~d~~~------------~~I~~~~~~g~~~~~~~~~~~~P-----~gi~~d~~~lyva~~~--- 227 (267)
T 1npe_A 168 LPNGLTFDAFSSQLCWVDAGT------------HRAECLNPAQPGRRKVLEGLQYP-----FAVTSYGKNLYYTDWK--- 227 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTT------------TEEEEEETTEEEEEEEEECCCSE-----EEEEEETTEEEEEETT---
T ss_pred CCcEEEEcCCCCEEEEEECCC------------CEEEEEecCCCceEEEecCCCCc-----eEEEEeCCEEEEEECC---
Confidence 22334443 46899875321 44556677653322222111112 3555678899996432
Q ss_pred CCCcccceeeCcEEEEEcCCCceE
Q 011542 257 GWLSRYDIYYNDTIILDRLSAQWK 280 (483)
Q Consensus 257 ~~~~~~~~~~~~v~~yd~~~~~W~ 280 (483)
.+.|.++|+.+.+-.
T Consensus 228 ---------~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 228 ---------TNSVIAMDLAISKEM 242 (267)
T ss_dssp ---------TTEEEEEETTTTEEE
T ss_pred ---------CCeEEEEeCCCCCce
Confidence 256899999876543
No 264
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=52.98 E-value=1.6e+02 Score=28.24 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=15.5
Q ss_pred cceeEEEECCcEEEEEcc
Q 011542 21 SGHSAVNIGKSKVVVFGG 38 (483)
Q Consensus 21 ~~h~~~~~~~~~l~v~GG 38 (483)
..|++++..++.||.+|-
T Consensus 120 ~~hs~alt~~G~v~~wG~ 137 (413)
T 1a12_A 120 DSHTAALTDDGRVFLWGS 137 (413)
T ss_dssp SSEEEEEETTSCEEEEEC
T ss_pred CCeEEEEcCCCcEEEeeC
Confidence 468888888899999995
No 265
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=51.51 E-value=1.4e+02 Score=26.95 Aligned_cols=104 Identities=11% Similarity=0.113 Sum_probs=51.5
Q ss_pred EEECCcEEEEEcccCCCccccceEEEEcCCC-cEEeeeecCCCCCCCCCCCCcceeEEEE-ECCEEEEEccccCCCCCcc
Q 011542 26 VNIGKSKVVVFGGLVDKRFLSDVVVYDIDNK-LWFQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSRRLGD 103 (483)
Q Consensus 26 ~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~~iyv~GG~~~~~~~~~ 103 (483)
+...++.||+.. . ...+++||+... .|.... +... ..+.+. .++.||+.. ..
T Consensus 143 ~~~~~g~l~vgt-~-----~~~l~~~d~~g~~~~~~~~-----------~~~~-~~~~~~d~~g~l~v~t--------~~ 196 (330)
T 3hxj_A 143 IVSEDGTIYVGS-N-----DNYLYAINPDGTEKWRFKT-----------NDAI-TSAASIGKDGTIYFGS--------DK 196 (330)
T ss_dssp EECTTSCEEEEC-T-----TSEEEEECTTSCEEEEEEC-----------SSCC-CSCCEECTTCCEEEES--------SS
T ss_pred EEcCCCEEEEEc-C-----CCEEEEECCCCCEeEEEec-----------CCCc-eeeeEEcCCCEEEEEe--------CE
Confidence 334356666633 1 135888998722 354421 1111 122333 356777654 35
Q ss_pred EEEEECCC-CeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc-eEE
Q 011542 104 FWVLDTDI-WQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE-WMQ 167 (483)
Q Consensus 104 ~~~yd~~t-~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~-W~~ 167 (483)
+++||... ..|..... . ....+.+...++.||+... ...+++||..... |..
T Consensus 197 l~~~d~~g~~~~~~~~~-----~-~~~~~~~~~~~g~l~v~t~------~~gl~~~~~~g~~~~~~ 250 (330)
T 3hxj_A 197 VYAINPDGTEKWNFYAG-----Y-WTVTRPAISEDGTIYVTSL------DGHLYAINPDGTEKWRF 250 (330)
T ss_dssp EEEECTTSCEEEEECCS-----S-CCCSCCEECTTSCEEEEET------TTEEEEECTTSCEEEEE
T ss_pred EEEECCCCcEEEEEccC-----C-cceeceEECCCCeEEEEcC------CCeEEEECCCCCEeEEe
Confidence 88999442 24554321 1 1122334444557877531 2357888875444 443
No 266
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=50.15 E-value=2.2e+02 Score=28.86 Aligned_cols=73 Identities=10% Similarity=0.019 Sum_probs=41.0
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCC---CCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCC
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDL---PSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTIS 162 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~---p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t 162 (483)
++++++.|+.++ .+.++|..+++-...-..... .....-.+++...+++.++.|+.+ ..+.++|+.+
T Consensus 201 dg~~las~s~D~-----~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D-----~~v~lWd~~~ 270 (611)
T 1nr0_A 201 DGSLFASTGGDG-----TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD-----KTIKIWNVAT 270 (611)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTT
T ss_pred CCCEEEEEECCC-----cEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC-----CeEEEEeCCC
Confidence 567777777554 477889877654332110000 111111223333566777777754 3578899988
Q ss_pred CceEEe
Q 011542 163 LEWMQL 168 (483)
Q Consensus 163 ~~W~~i 168 (483)
.+....
T Consensus 271 ~~~~~~ 276 (611)
T 1nr0_A 271 LKVEKT 276 (611)
T ss_dssp TEEEEE
T ss_pred Cceeee
Confidence 876553
No 267
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=50.02 E-value=1.5e+02 Score=26.94 Aligned_cols=65 Identities=9% Similarity=-0.028 Sum_probs=35.9
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
++..++.|+.++ .+.++|+.+++-...-. . ....-.+++...++.+++.|+.++ .+.++|+....
T Consensus 76 dg~~l~s~s~D~-----~v~~wd~~~~~~~~~~~---~-h~~~v~~~~~~~~~~~l~s~s~D~-----~i~vwd~~~~~ 140 (319)
T 3frx_A 76 DGAYALSASWDK-----TLRLWDVATGETYQRFV---G-HKSDVMSVDIDKKASMIISGSRDK-----TIKVWTIKGQC 140 (319)
T ss_dssp TSSEEEEEETTS-----EEEEEETTTTEEEEEEE---C-CSSCEEEEEECTTSCEEEEEETTS-----CEEEEETTSCE
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCCeeEEEc---c-CCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCe
Confidence 556666676543 47889998876432211 1 111112233334557788887654 36677876543
No 268
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=49.01 E-value=1.8e+02 Score=27.56 Aligned_cols=70 Identities=7% Similarity=0.094 Sum_probs=40.3
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCce
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEW 165 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 165 (483)
++.+++.|+.++ .+.+||+.+.+-...-. ..+....-.+++...++.+++.|+.++ .+.+||+.+.+.
T Consensus 181 ~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~ 248 (437)
T 3gre_A 181 EKSLLVALTNLS-----RVIIFDIRTLERLQIIE--NSPRHGAVSSICIDEECCVLILGTTRG-----IIDIWDIRFNVL 248 (437)
T ss_dssp SCEEEEEEETTS-----EEEEEETTTCCEEEEEE--CCGGGCCEEEEEECTTSCEEEEEETTS-----CEEEEETTTTEE
T ss_pred CCCEEEEEeCCC-----eEEEEeCCCCeeeEEEc--cCCCCCceEEEEECCCCCEEEEEcCCC-----eEEEEEcCCccE
Confidence 466777776543 58899998765433221 011112222333334567788887653 488899988665
Q ss_pred EE
Q 011542 166 MQ 167 (483)
Q Consensus 166 ~~ 167 (483)
..
T Consensus 249 ~~ 250 (437)
T 3gre_A 249 IR 250 (437)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 269
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=49.01 E-value=1.3e+02 Score=31.13 Aligned_cols=113 Identities=14% Similarity=0.185 Sum_probs=55.5
Q ss_pred eEEEECCcEEEEEcccCCCccccceEEEEcCCC-cEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCCC
Q 011542 24 SAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNK-LWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRR 100 (483)
Q Consensus 24 ~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~ 100 (483)
-++...++.+|+|=| +.+|+++.... .......... -+.+|. ... ++... ++++|+|=|
T Consensus 447 DAit~~rg~~yfFKg-------~~yWr~~~~~~~~~~P~~Is~~---wp~LP~-~ID-AA~~~~~~~k~yFFkG------ 508 (631)
T 1ck7_A 447 DGIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATF---WPELPE-KID-AVYEAPQEEKAVFFAG------ 508 (631)
T ss_dssp SEEEECSSSEEEECS-------SEEEEESCTTSCCEEEEEGGGT---CTTSCS-SCS-BCCEETTTTEEEEEET------
T ss_pred ceeEecCCcEEEEcC-------CEEEEEcCCCCCCCCceecccc---CCCCCc-cce-EEEEECCCCEEEEEec------
Confidence 344445578899887 35788876552 2322221111 111221 122 22222 578999965
Q ss_pred CccEEEEECCCC--eE-EEeecCCCCCCC--CcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCC
Q 011542 101 LGDFWVLDTDIW--QW-SELTSFGDLPSP--RDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 101 ~~~~~~yd~~t~--~W-~~l~~~~~~p~~--r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
+.+|+|+..+- -+ +.|... ..|.. ....+...-.++++|+|-| +..|+||..++
T Consensus 509 -~~yWry~~~~l~~GYPk~Is~~-G~P~~~~~IDAAf~~~~~gktYFFkG-------~~ywryd~~~~ 567 (631)
T 1ck7_A 509 -NEYWIYSASTLERGYPKPLTSL-GLPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKK 567 (631)
T ss_dssp -TEEEEEETTEECTTCCEEGGGG-TCCTTCCCCCBCCCCTTTCEEEEEET-------TEEEEEETTTT
T ss_pred -CEEEEECCCccccCCCccchhc-CCCCCCCcceeEEEecCCCeEEEEEC-------CEEEEEcCCcc
Confidence 24889985210 01 112111 12321 1222211114579999976 35899997665
No 270
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=48.26 E-value=2.7e+02 Score=29.31 Aligned_cols=264 Identities=10% Similarity=0.095 Sum_probs=127.7
Q ss_pred cceEEceeCCCCCCCCCCCcceeEEEE--CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCC----
Q 011542 2 HYWVRASSSDFGGTVPQPRSGHSAVNI--GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPG---- 75 (483)
Q Consensus 2 ~~W~~~~~~~~~g~~p~~R~~h~~~~~--~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~---- 75 (483)
+.|+.+.+.. ...|.. .+++. +.+.||+.... ..+|+.+-...+|+.+... ...
T Consensus 11 ~~w~~~~~~~-----~~g~i~-~i~~~p~~~~~~~~~~~~------ggv~rS~D~G~tW~~i~~~--------~~~~~~~ 70 (737)
T 2cn3_A 11 YKWDNVVIGG-----GGGFMP-GIVFNETEKDLIYARAAI------GGAYRWDPSTETWIPLLDH--------FQMDEYS 70 (737)
T ss_dssp EEEEEECCCS-----BCSCCC-EEEECSSSTTCEEEECSS------SCEEEEETTTTEEEECCTT--------CCGGGGG
T ss_pred CeeEEcccCC-----Ccceee-EEEECCCCCCEEEEEecC------CcEEEeCCCCCCEEECcCc--------cCccccc
Confidence 4788886311 112332 23332 23567774311 3489998889999997521 110
Q ss_pred CcceeEEEEE---CCEEEEEccccCCC--C-CccEEEEECCCCeEEEeecCCC----CCCCCcccEEEEE--CCcEEEEE
Q 011542 76 PRAFHIAVAI---DCHMFIFGGRFGSR--R-LGDFWVLDTDIWQWSELTSFGD----LPSPRDFAAASAI--GNRKIVMY 143 (483)
Q Consensus 76 ~R~~h~~~~~---~~~iyv~GG~~~~~--~-~~~~~~yd~~t~~W~~l~~~~~----~p~~r~~~~~~~~--~~~~iyv~ 143 (483)
....+++++. .+.||+..|..... . ...+++=.=.-.+|+++..... +|.....+.+++- ..+.||+.
T Consensus 71 ~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g 150 (737)
T 2cn3_A 71 YYGVESIATDPVDPNRVYIVAGMYTNDWLPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLG 150 (737)
T ss_dssp GGCEEEEEECSSSTTCEEEEECSCSSSSSCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEE
T ss_pred CCCcceEEeCCCCCCEEEEEecccccccccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEe
Confidence 1123344443 35788875531111 1 1123332234468998763111 1111122444442 22356663
Q ss_pred ecCCCCcCCccEEEEECCCCceEEeccCCCCCCC-----------C---cCceEEEeC----------CEEEEEccCCCC
Q 011542 144 GGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPP-----------R---CGHTATMVE----------KRLLIYGGRGGG 199 (483)
Q Consensus 144 GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~-----------r---~~~~~~~~~----------~~lyv~GG~~~~ 199 (483)
. ..+ ..+++=.=.-.+|+++. .+|.. + .+...+.++ +.+|+.-.....
T Consensus 151 ~-~~g----~gl~~S~DgG~tW~~~~---~~~~~~~~~~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~ 222 (737)
T 2cn3_A 151 T-RCG----NGLWRSTDYGVTWSKVE---SFPNPGTYIYDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNE 222 (737)
T ss_dssp C-STT----CCEEEESSTTSSCEECT---TCCCCCCCBSCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSC
T ss_pred e-ccC----CcEEEeCCCCcceeccc---CCCCCcccccCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCc
Confidence 2 111 23444333346899886 23321 0 112222221 266664221110
Q ss_pred CCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEEe-CCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCc
Q 011542 200 GPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITSG-GHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (483)
Q Consensus 200 ~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (483)
.+++. .-...+|+.+. ..|.....|.+++. ++.+|+..+....... ......+|+++....+
T Consensus 223 -----~v~~S------~DgG~tW~~~~---~~p~~~~~~~~~~~~~~~l~~~~~d~~g~y~---~~~~g~v~~s~d~G~t 285 (737)
T 2cn3_A 223 -----SIYRS------TDGGVTWKAVP---GQPKGLLPHHGVLASNGMLYITYGDTCGPYD---GNGKGQVWKFNTRTGE 285 (737)
T ss_dssp -----CEEEE------SSTTSCCEECT---TCCCSSEEEEEEECTTSEEEEEEESSCCSSC---CSCCEEEEEEETTTCC
T ss_pred -----cEEEE------cCCCCceEECC---CCCCcccceEEEECCCCeEEEEecCCCCccc---cccCceEEEEeCCCCC
Confidence 12222 22456899887 45655555555544 6788886543211000 0023568999999999
Q ss_pred eEEccCCCCC-CCCCcceEEEEE----CCEEEEEccC
Q 011542 279 WKRLPIGNEP-PPARAYHSMTCL----GSLYLLFGGF 310 (483)
Q Consensus 279 W~~v~~~~~~-p~~R~~~~~~~~----~~~i~v~GG~ 310 (483)
|+.+...+.. +..+++.+.+.+ .+.||+.+..
T Consensus 286 W~~i~~~~~~~~~~~~~~~~i~v~p~~~~~ly~~~~~ 322 (737)
T 2cn3_A 286 WIDITPIPYSSSDNRFCFAGLAVDRQNPDIIMVTSMN 322 (737)
T ss_dssp EEECCSSCTTSTTCCSEEEEEEECTTCTTCEEEEEEC
T ss_pred EEEccCCCCCCcccccccccEEEcCCCCCEEEEEecc
Confidence 9998764321 123555554444 2678877643
No 271
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=43.69 E-value=1.5e+02 Score=30.26 Aligned_cols=77 Identities=16% Similarity=0.080 Sum_probs=46.4
Q ss_pred ccceEEEEcCCCc--EEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEECCCCe--EEEeecC
Q 011542 45 LSDVVVYDIDNKL--WFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQ--WSELTSF 120 (483)
Q Consensus 45 ~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~--W~~l~~~ 120 (483)
...+..+|+.+++ |+... +.+..+..++..++.||+ |..+ ..++.||.++++ |+...
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~-----------~~~~~~g~~~tagglvf~-g~~d-----g~l~A~D~~tG~~lW~~~~-- 525 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKE-----------HLPLWAGVLATAGNLVFT-GTGD-----GYFKAFDAKSGKELWKFQT-- 525 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEE-----------SSCCCSCCEEETTTEEEE-ECTT-----SEEEEEETTTCCEEEEEEC--
T ss_pred cceEEEEECCCCCEEEEecC-----------CCCCcccceEeCCCEEEE-ECCC-----CcEEEEECCCCCEEEEecC--
Confidence 3568899998874 87743 223344445556778877 4322 358999998875 76543
Q ss_pred CCCCCCCcccEEEEECCcEEEEE
Q 011542 121 GDLPSPRDFAAASAIGNRKIVMY 143 (483)
Q Consensus 121 ~~~p~~r~~~~~~~~~~~~iyv~ 143 (483)
+.+.....++...+++.||.
T Consensus 526 ---~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 526 ---GSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp ---SSCCCSCCEEEEETTEEEEE
T ss_pred ---CCCcccCceEEEECCEEEEE
Confidence 23333333333236677776
No 272
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=43.16 E-value=3.3e+02 Score=28.92 Aligned_cols=209 Identities=11% Similarity=0.175 Sum_probs=98.7
Q ss_pred ceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEEC---CEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCC
Q 011542 47 DVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAID---CHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDL 123 (483)
Q Consensus 47 ~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~---~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~ 123 (483)
-+++-+-.-.+|..+..... ......+..+++++.. +.+|+..|.........+++=+=.-.+|+++......
T Consensus 38 gv~rS~DgG~tW~~~~~~~~----~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~ 113 (789)
T 1sqj_A 38 GAYRWDAGTSKWIPLNDFIE----AQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPM 113 (789)
T ss_dssp CEEEEETTTTEEEESCTTCC----GGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCC
T ss_pred CEEEecCCCCCeeECccCCC----cccccCCceeEEEECCCCCCEEEEEeCccCCCcccEEEEECCCCCcceeccCCccc
Confidence 37777777789998752100 0000123345555542 4688876532211112344333345689998631111
Q ss_pred C---CCC-cccEEEEEC--CcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe----CCEEEEE
Q 011542 124 P---SPR-DFAAASAIG--NRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV----EKRLLIY 193 (483)
Q Consensus 124 p---~~r-~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~----~~~lyv~ 193 (483)
+ ..| ..+.+++.. .+.+|+ |.. ...+++=+-.-.+|+++.....+...-.+...+.+ .+.+|+.
T Consensus 114 ~~~~~~~~~~~~iav~p~~~~~v~~-g~~-----~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~ 187 (789)
T 1sqj_A 114 GANDMGRNNGERLAVNPFNSNEVWM-GTR-----TEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYAS 187 (789)
T ss_dssp CTTSTTTTSCCCEEEETTEEEEEEE-ECS-----SSCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEE
T ss_pred CccCCCccceeEEEEcCCCCCEEEE-Eec-----cCCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEE
Confidence 0 122 223344432 235665 432 12355433345789998721111111122233332 2467775
Q ss_pred ccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCC----------------CeeeEEEEe--CCEEEEEcCCCC
Q 011542 194 GGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSS----------------RCGHTITSG--GHYLLLFGGHGT 255 (483)
Q Consensus 194 GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~----------------r~~~~~~~~--~~~i~v~GG~~~ 255 (483)
.... ..+++. .-...+|+.+. ..|.. ...|.+++. .+.||+..+...
T Consensus 188 ~~~~------~~v~~S------~DgG~TW~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~ 252 (789)
T 1sqj_A 188 ATAP------QGMYVT------HDGGVSWEPVA---GQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYP 252 (789)
T ss_dssp ESST------TCEEEE------SSTTSSCEECT---TCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSC
T ss_pred EcCC------CeEEEE------cCCCcCcccCC---CCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCC
Confidence 4321 112221 22456899876 22221 111444432 778888743211
Q ss_pred CCCCcccceeeCcEEEEEcCCCceEEccC
Q 011542 256 GGWLSRYDIYYNDTIILDRLSAQWKRLPI 284 (483)
Q Consensus 256 ~~~~~~~~~~~~~v~~yd~~~~~W~~v~~ 284 (483)
... ......+++.+-...+|+.+..
T Consensus 253 ~p~----~g~~g~l~~S~DgG~tW~~~~~ 277 (789)
T 1sqj_A 253 GPW----GVTFGEVWRQNRTSGAWDDITP 277 (789)
T ss_dssp SSS----CCCCCCEEEEETTTCCEEECCC
T ss_pred CCC----CCCCceEEEEeCCCCceEECcC
Confidence 000 0123568888888899999875
No 273
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=43.04 E-value=2.4e+02 Score=27.31 Aligned_cols=110 Identities=14% Similarity=0.111 Sum_probs=60.8
Q ss_pred CcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEEC-CEEEEEccccCCCCCccEEEEE
Q 011542 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAID-CHMFIFGGRFGSRRLGDFWVLD 108 (483)
Q Consensus 30 ~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~-~~iyv~GG~~~~~~~~~~~~yd 108 (483)
++.||+.--. ..+.+||+.++....+.. ...+-.+.++..+ +.||+.....+ .....+..++
T Consensus 149 ~g~Lyv~d~~------~~I~~id~~~~~v~~~~~----------~~~~P~~ia~d~~G~~lyvad~~~~-~~~~~v~~~~ 211 (430)
T 3tc9_A 149 HNHLYLVGEQ------HPTRLIDFEKEYVSTVYS----------GLSKVRTICWTHEADSMIITNDQNN-NDRPNNYILT 211 (430)
T ss_dssp EEEEEEEEBT------EEEEEEETTTTEEEEEEC----------CCSCEEEEEECTTSSEEEEEECCSC-TTSEEEEEEE
T ss_pred CCeEEEEeCC------CcEEEEECCCCEEEEEec----------CCCCcceEEEeCCCCEEEEEeCCCC-cccceEEEEe
Confidence 4678886531 678999999988877642 1222233333333 45888764332 2222456666
Q ss_pred CCCCeEE---EeecCCCCCCCCcccEEEEEC-CcEEEEEecCCCCcCCccEEEEECCCCceEEe
Q 011542 109 TDIWQWS---ELTSFGDLPSPRDFAAASAIG-NRKIVMYGGWDGKKWLSDVYVLDTISLEWMQL 168 (483)
Q Consensus 109 ~~t~~W~---~l~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i 168 (483)
... .|. .+.. . ..-+.+++.. ++.||+.-- ....+++||+.+..-..+
T Consensus 212 ~~g-~~~~~~~l~~---~---~~p~giavdp~~g~lyv~d~-----~~~~V~~~~~~~~~~~~~ 263 (430)
T 3tc9_A 212 RES-GFKVITELTK---G---QNCNGAETHPINGELYFNSW-----NAGQVFRYDFTTQETTPL 263 (430)
T ss_dssp GGG-TSCSEEEEEE---C---SSCCCEEECTTTCCEEEEET-----TTTEEEEEETTTTEEEEE
T ss_pred CCC-ceeeeeeecc---C---CCceEEEEeCCCCEEEEEEC-----CCCEEEEEECCCCcEEEE
Confidence 543 222 2221 1 2224445544 568888642 234699999987765343
No 274
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=42.58 E-value=2.1e+02 Score=26.60 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=20.6
Q ss_pred eEEEECCcEEEEEcccCCC--ccccceEEEEcCCC
Q 011542 24 SAVNIGKSKVVVFGGLVDK--RFLSDVVVYDIDNK 56 (483)
Q Consensus 24 ~~~~~~~~~l~v~GG~~~~--~~~~~~~~yd~~~~ 56 (483)
+++...|+++++.||.+.. +.-+.+.+++....
T Consensus 19 sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~ 53 (365)
T 4h5i_A 19 GAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPT 53 (365)
T ss_dssp EEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTT
T ss_pred EEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCC
Confidence 4445677899999885432 23455777776544
No 275
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=40.22 E-value=42 Score=29.83 Aligned_cols=62 Identities=11% Similarity=0.185 Sum_probs=36.9
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEE-----eecCCCCCCC------CcccEEEEE-CCcEEEEEecCCCCcCCc
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSE-----LTSFGDLPSP------RDFAAASAI-GNRKIVMYGGWDGKKWLS 153 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~-----l~~~~~~p~~------r~~~~~~~~-~~~~iyv~GG~~~~~~~~ 153 (483)
++++|+|-| +.+|+||..+++-.. +. ...|.. ..--++... .++++|+|-| +
T Consensus 129 ~~k~yfFkG-------~~yw~~d~~~~~~~~gyPk~i~--~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg-------~ 192 (227)
T 3lp9_A 129 GKEVYLFKG-------DQYARIDYGSNSMVNKEIKSIS--SGYPCFRNTIFESGADAAFASHKTNEVYFFKD-------D 192 (227)
T ss_dssp TTEEEEEET-------TEEEEEETTTTEESSSSCEEHH--HHCGGGTTSGGGGCCSEEEECSSTTEEEEEET-------T
T ss_pred CCEEEEEEC-------CEEEEEeCCCccccCCCCeEHH--HCCCCccccccCCCccEEEEcCCCceEEEEEC-------C
Confidence 579999977 358999987654211 11 013321 112222222 4679999976 3
Q ss_pred cEEEEECCCC
Q 011542 154 DVYVLDTISL 163 (483)
Q Consensus 154 ~v~~yd~~t~ 163 (483)
..|+||..+.
T Consensus 193 ~Ywr~d~~~~ 202 (227)
T 3lp9_A 193 HYARVKVTPX 202 (227)
T ss_dssp EEEEEECCSS
T ss_pred EEEEEECCcc
Confidence 5788998765
No 276
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=40.12 E-value=2.6e+02 Score=26.80 Aligned_cols=151 Identities=9% Similarity=-0.053 Sum_probs=79.0
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECC-cEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGN-RKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
+++||+.... -+.+.++|+.++.-..+...+ ...+ .+...+ +.+|+...... ..++.++..+..
T Consensus 141 ~g~lyv~d~~-----~~~I~~id~~~g~~~~~~~~~-----~~~~-ia~~~~g~~l~~~d~~~~----~~I~~~d~~~~~ 205 (409)
T 3hrp_A 141 NNTVLAYQRD-----DPRVRLISVDDNKVTTVHPGF-----KGGK-PAVTKDKQRVYSIGWEGT----HTVYVYMKASGW 205 (409)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTTEEEEEEETC-----CBCB-CEECTTSSEEEEEBSSTT----CEEEEEEGGGTT
T ss_pred CCCEEEEecC-----CCcEEEEECCCCEEEEeeccC-----CCCc-eeEecCCCcEEEEecCCC----ceEEEEEcCCCc
Confidence 5789988642 235899999988777665421 1122 333333 35666543221 168999987543
Q ss_pred e-EEeccCCCCCCCCcCceEEEe--CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCee-e-E
Q 011542 165 W-MQLPVTGSVPPPRCGHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCG-H-T 239 (483)
Q Consensus 165 W-~~i~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~-~-~ 239 (483)
- ..+... .......-+.+++. ++.||+... . ..+..||+++.....+...+........ . .
T Consensus 206 ~~~~~g~~-~~~~~~~p~~iav~p~~g~lyv~d~---~----------~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ 271 (409)
T 3hrp_A 206 APTRIGQL-GSTFSGKIGAVALDETEEWLYFVDS---N----------KNFGRFNVKTQEVTLIKQLELSGSLGTNPGPY 271 (409)
T ss_dssp CEEEEEEC-CTTSCSCCCBCEECTTSSEEEEECT---T----------CEEEEEETTTCCEEEEEECCCCSCCCCSSCCE
T ss_pred eeEEeeec-cchhcCCcEEEEEeCCCCeEEEEEC---C----------CcEEEEECCCCCEEEEecccccCCCCCCcccc
Confidence 2 233100 01012222344444 578999432 1 3455668877765555211111111111 1 4
Q ss_pred EEEe--CCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCC
Q 011542 240 ITSG--GHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSA 277 (483)
Q Consensus 240 ~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 277 (483)
+++. ++.||+.... .+.|++||+...
T Consensus 272 ia~~p~~g~lyv~d~~------------~~~I~~~~~~g~ 299 (409)
T 3hrp_A 272 LIYYFVDSNFYMSDQN------------LSSVYKITPDGE 299 (409)
T ss_dssp EEEETTTTEEEEEETT------------TTEEEEECTTCC
T ss_pred EEEeCCCCEEEEEeCC------------CCEEEEEecCCC
Confidence 4443 5789986432 356899987655
No 277
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=39.67 E-value=2.5e+02 Score=31.35 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=87.3
Q ss_pred CCcceeEEEECCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE---CCEEEEEccc
Q 011542 19 PRSGHSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI---DCHMFIFGGR 95 (483)
Q Consensus 19 ~R~~h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~---~~~iyv~GG~ 95 (483)
.-.|+++....++. ++|.-+.......++.|+.....|..-..... ........++++++. +...|++|--
T Consensus 333 ~q~GfSa~~t~d~~--~~GapG~~~w~G~v~~~~~~~~~~~~~~~~~~----~~~~~sylGySVa~~~~~g~~~~v~GAP 406 (1095)
T 3k6s_A 333 AQEGFSAVFTPDGP--VLGAVGSFTWSGGAFLYPPNMSPTFINMSQEN----VDMRDSYLGYSTELALWKGVQSLVLGAP 406 (1095)
T ss_dssp CCTTSSEECCTTCC--EEEESCSTTTTBEEEECCSSSCCEEECCCSSC----CCCCSCCBTSSEECCCCSSSCEEEEEET
T ss_pred ccccccceecCCcc--eEcccccCCccceeEEecCCCcceeecccccc----ccccccccceeeEEeccCCceEEEEEcc
Confidence 34577777776654 67764443444567788876655543321111 112223345555442 2345666632
Q ss_pred cCCCCCccEEEEECCCCeEEEeec-CCCCCCCCcccEEEEE---CC--cEEEEEecCCC--CcCCccEEEEECCC--Cce
Q 011542 96 FGSRRLGDFWVLDTDIWQWSELTS-FGDLPSPRDFAAASAI---GN--RKIVMYGGWDG--KKWLSDVYVLDTIS--LEW 165 (483)
Q Consensus 96 ~~~~~~~~~~~yd~~t~~W~~l~~-~~~~p~~r~~~~~~~~---~~--~~iyv~GG~~~--~~~~~~v~~yd~~t--~~W 165 (483)
. ......+++|......|..... .+.-....+++++++. +| ..++++|.-.. ......+++|.... ..|
T Consensus 407 ~-~~~~G~V~i~~~~~~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~~~~~~ 485 (1095)
T 3k6s_A 407 R-YQHTGKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRRW 485 (1095)
T ss_dssp T-GGGTCEEEEEECCTTTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCSSTTCC
T ss_pred c-ccccceEEEEEecCCcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCCCCcce
Confidence 2 1234568999888778877543 2333345666777764 12 26777774221 12345688885543 457
Q ss_pred EEecc-CCC--CCCCCcCceEEEe
Q 011542 166 MQLPV-TGS--VPPPRCGHTATMV 186 (483)
Q Consensus 166 ~~i~~-~~~--~p~~r~~~~~~~~ 186 (483)
..... .+. .+..|++.+++.+
T Consensus 486 ~~~~~l~g~~~~~~~~FG~sva~~ 509 (1095)
T 3k6s_A 486 WCDAVLYGEQGHPWGRFGAALTVL 509 (1095)
T ss_dssp CSCSSCCCCCSCSSCCBTSCEEEE
T ss_pred eeeEEeecccCCccccCccceEee
Confidence 64321 122 1467888888774
No 278
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=38.84 E-value=2e+02 Score=29.79 Aligned_cols=65 Identities=22% Similarity=0.257 Sum_probs=35.0
Q ss_pred EEEEECCEEEEEccccCCCCCccEEEEECCCC-eEEEeecC---CCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEE
Q 011542 81 IAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIW-QWSELTSF---GDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVY 156 (483)
Q Consensus 81 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~-~W~~l~~~---~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~ 156 (483)
+++..++++|+|=|. .+|+++.... ........ ..+|.. ...+.....++++|+|=| +.+|
T Consensus 448 Ait~~rg~~yfFKg~-------~yWr~~~~~~~~~~P~~Is~~wp~LP~~-IDAA~~~~~~~k~yFFkG-------~~yW 512 (631)
T 1ck7_A 448 GIAQIRGEIFFFKDR-------FIWRTVTPRDKPMGPLLVATFWPELPEK-IDAVYEAPQEEKAVFFAG-------NEYW 512 (631)
T ss_dssp EEEECSSSEEEECSS-------EEEEESCTTSCCEEEEEGGGTCTTSCSS-CSBCCEETTTTEEEEEET-------TEEE
T ss_pred eeEecCCcEEEEcCC-------EEEEEcCCCCCCCCceeccccCCCCCcc-ceEEEEECCCCEEEEEec-------CEEE
Confidence 445568899999662 3777776442 22111111 123432 222222224568999965 3478
Q ss_pred EEEC
Q 011542 157 VLDT 160 (483)
Q Consensus 157 ~yd~ 160 (483)
+|+.
T Consensus 513 ry~~ 516 (631)
T 1ck7_A 513 IYSA 516 (631)
T ss_dssp EEET
T ss_pred EECC
Confidence 8875
No 279
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=36.44 E-value=2.9e+02 Score=26.44 Aligned_cols=19 Identities=16% Similarity=-0.022 Sum_probs=15.6
Q ss_pred cceeEEEECCcEEEEEccc
Q 011542 21 SGHSAVNIGKSKVVVFGGL 39 (483)
Q Consensus 21 ~~h~~~~~~~~~l~v~GG~ 39 (483)
..|++++..++.||.+|--
T Consensus 241 ~~hs~alt~~G~v~~wG~n 259 (413)
T 1a12_A 241 AYFTFAISHEGHVYGFGLS 259 (413)
T ss_dssp TTEEEEEETTCCEEEEECC
T ss_pred CCEEEEEeCCCCEEEEeCC
Confidence 3588888888999999953
No 280
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=36.24 E-value=3e+02 Score=28.29 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=34.7
Q ss_pred CccEEEEECCCCeEEE-eecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEECCCC
Q 011542 101 LGDFWVLDTDIWQWSE-LTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 101 ~~~~~~yd~~t~~W~~-l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
.+.+-+.|+.+.+... +. .+|.+..-|++.+-.|+ .+|+.+. ..+.+.+||..+.
T Consensus 253 i~~V~VID~~~~~~~~~~~---~Ipvg~~PhGv~~sPDGk~v~V~~~-----~s~~VsVid~~~~ 309 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTR---YIPIANNPHGCNMAPDKKHLCVAGK-----LSPTVTVLDVTRF 309 (595)
T ss_dssp ETTEEEEECSGGGCCSSEE---EEEEESSCCCEEECTTSSEEEEECT-----TSSBEEEEEGGGH
T ss_pred ECcEEEEeCcccCCceeEE---EEecCCCceEEEEcCCCCEEEEeCC-----CCCeEEEEECccc
Confidence 3568889998733222 11 14455666777776665 5666554 3567899998865
No 281
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=36.22 E-value=2.7e+02 Score=26.71 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=15.4
Q ss_pred cceeEEEECCcEEEEEcc
Q 011542 21 SGHSAVNIGKSKVVVFGG 38 (483)
Q Consensus 21 ~~h~~~~~~~~~l~v~GG 38 (483)
..|++++..++.||.+|-
T Consensus 188 ~~hs~alt~~G~v~~wG~ 205 (423)
T 3mvd_K 188 ADHLVILTTAGKVFTVGC 205 (423)
T ss_dssp SSEEEEEETTSCEEEEEC
T ss_pred CCeEEEEecCCeEEEeeC
Confidence 468888888899999994
No 282
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=35.74 E-value=2.3e+02 Score=25.06 Aligned_cols=65 Identities=12% Similarity=0.021 Sum_probs=33.4
Q ss_pred CCEEEEEccccCCCCCccEEEEECCC--CeEEEeecCCCCCCCCcccEEEEE-C--CcEEEEEecCCCCcCCccEEEEEC
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDI--WQWSELTSFGDLPSPRDFAAASAI-G--NRKIVMYGGWDGKKWLSDVYVLDT 160 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t--~~W~~l~~~~~~p~~r~~~~~~~~-~--~~~iyv~GG~~~~~~~~~v~~yd~ 160 (483)
++.+++.|+.++ .+.+||..+ ..+..+.. +......-.++.+ . ++.+++.|+.++ .+.+||+
T Consensus 22 ~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~d~~~l~s~~~dg-----~v~vwd~ 88 (351)
T 3f3f_A 22 YGRHVATCSSDQ-----HIKVFKLDKDTSNWELSDS---WRAHDSSIVAIDWASPEYGRIIASASYDK-----TVKLWEE 88 (351)
T ss_dssp SSSEEEEEETTS-----EEEEEEECSSSCCEEEEEE---EECCSSCEEEEEECCGGGCSEEEEEETTS-----CEEEEEE
T ss_pred CCCEEEEeeCCC-----eEEEEECCCCCCcceecce---eccCCCcEEEEEEcCCCCCCEEEEEcCCC-----eEEEEec
Confidence 456666676543 466677653 34444332 1111111222233 2 357778887644 4677777
Q ss_pred CCC
Q 011542 161 ISL 163 (483)
Q Consensus 161 ~t~ 163 (483)
.+.
T Consensus 89 ~~~ 91 (351)
T 3f3f_A 89 DPD 91 (351)
T ss_dssp CTT
T ss_pred CCC
Confidence 654
No 283
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=35.11 E-value=2.3e+02 Score=24.84 Aligned_cols=97 Identities=11% Similarity=0.085 Sum_probs=50.7
Q ss_pred ECCEEEEEccccCCCCCccEEEEECCC----CeEEEee----c-CCCCCCC----CcccEEEEECCcEEEEEecCCCCcC
Q 011542 85 IDCHMFIFGGRFGSRRLGDFWVLDTDI----WQWSELT----S-FGDLPSP----RDFAAASAIGNRKIVMYGGWDGKKW 151 (483)
Q Consensus 85 ~~~~iyv~GG~~~~~~~~~~~~yd~~t----~~W~~l~----~-~~~~p~~----r~~~~~~~~~~~~iyv~GG~~~~~~ 151 (483)
.++++|+|=| +.+|+||..+ .....-+ . -..+|.. ....+...-.++++|+|-|
T Consensus 69 ~~g~~~fFkg-------~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG------ 135 (225)
T 3oyo_A 69 EASEAYVFSG-------NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKG------ 135 (225)
T ss_dssp STTEEEEEET-------TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEET------
T ss_pred CCCeEEEEcC-------CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeC------
Confidence 5789999976 3589997632 2221111 0 0123331 2222222124679999976
Q ss_pred CccEEEEECCCCceEEec--cCCCCCC------CCcCceEEEe--CCEEEEEcc
Q 011542 152 LSDVYVLDTISLEWMQLP--VTGSVPP------PRCGHTATMV--EKRLLIYGG 195 (483)
Q Consensus 152 ~~~v~~yd~~t~~W~~i~--~~~~~p~------~r~~~~~~~~--~~~lyv~GG 195 (483)
+..|+||..+++...-+ .....|. +..-.++... ++++|+|-|
T Consensus 136 -~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG 188 (225)
T 3oyo_A 136 -NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG 188 (225)
T ss_dssp -TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET
T ss_pred -CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC
Confidence 35899997776655310 0001111 2222344443 789999987
No 284
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=33.88 E-value=4.3e+02 Score=27.54 Aligned_cols=204 Identities=10% Similarity=-0.037 Sum_probs=97.2
Q ss_pred ceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE--CCEEEEEccccCCCCCccEEEEECCCC----eEEEeecC
Q 011542 47 DVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI--DCHMFIFGGRFGSRRLGDFWVLDTDIW----QWSELTSF 120 (483)
Q Consensus 47 ~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~----~W~~l~~~ 120 (483)
.+.++++.+.....+.. ..+.-+++++. ++.||+.--. ...|+++++.+. .-..+..
T Consensus 387 ~I~~id~~~~~~~~~~~-----------~~~~p~gla~d~~~~~Ly~sD~~-----~~~I~~~~~~g~~~~~~~~~~i~- 449 (699)
T 1n7d_A 387 EVRKMTLDRSEYTSLIP-----------NLRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVIS- 449 (699)
T ss_dssp C-CEECTTSCCEECCSC-----------CCTTCCCCEEETTTTEEEECCTT-----TTSBEEEESCCCCC-CCCCCBCC-
T ss_pred ceEEEeCCCCcceeeec-----------cCcceEEEccccccCeEEEEecC-----CCeEEEEecCCCCCCcceEEEEe-
Confidence 56677777766655431 11222334443 5678876321 235888888751 1111100
Q ss_pred CCCCCCCcccEEEEE-CCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCCCCCcCceEEEe--CCEEEEEccCC
Q 011542 121 GDLPSPRDFAAASAI-GNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVPPPRCGHTATMV--EKRLLIYGGRG 197 (483)
Q Consensus 121 ~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~ 197 (483)
..+.. -.++++- .++.||+.-. ..+.++++++....-+.+... .+..| ..+++. ++.||+.--..
T Consensus 450 ~~~~~---P~glavD~~~g~LY~tD~-----~~~~I~v~d~dg~~~~~l~~~-~~~~P---~giavDp~~g~ly~td~~~ 517 (699)
T 1n7d_A 450 RDIQA---PDGLAVDWIHSNIYWTDS-----VLGTVSVADTKGVKRKTLFRE-QGSKP---RAIVVDPVHGFMYWTDWGT 517 (699)
T ss_dssp SCC-----CCCEECCCSSSBCEECCT-----TTSCEEEEBSSSCCEEEECCC-SSCCC---CCEECCSSSSCCEECCCSS
T ss_pred CCCCC---cceEEEEeeCCcEEEEec-----cCCeEEEEecCCCceEEEEeC-CCCCc---ceEEEccCCCcEEEcccCC
Confidence 01111 1223332 3458888532 245688999876654444311 12222 233332 56788754110
Q ss_pred CCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEEE--eCCEEEEEcCCCCCCCCcccceeeCcEEEEEcC
Q 011542 198 GGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTITS--GGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRL 275 (483)
Q Consensus 198 ~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~ 275 (483)
...+++++++...-+.+... .+. .-.++++ .+++||+.-.. .+.|+++|+.
T Consensus 518 -----------~~~I~~~~~dG~~~~~l~~~-~l~---~PnGlavd~~~~~LY~aD~~------------~~~I~~~d~d 570 (699)
T 1n7d_A 518 -----------PAKIKKGGLNGVDIYSLVTE-NIQ---WPNGITLDLLSGRLYWVDSK------------LHSISSIDVN 570 (699)
T ss_dssp -----------SCCEEBCCSSSCCCCEESCS-SCS---SCCCEEECTTTCCEEEEETT------------TTEEEEECSS
T ss_pred -----------CCeEEEEeCCCCCeeEEEeC-CCC---CccEEEEeccCCEEEEEecC------------CCeEEEEccC
Confidence 13344556554333333211 111 1223444 46788886532 2568899987
Q ss_pred CCceEEccCCCCCCCCCcceEEEEECCEEEEEc
Q 011542 276 SAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFG 308 (483)
Q Consensus 276 ~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~G 308 (483)
...-..+.... .......++++.++.||+.-
T Consensus 571 G~~~~~~~~~~--~~~~~P~glavd~~~lywtd 601 (699)
T 1n7d_A 571 GGNRKTILEDE--KRLAHPFSLAVFEDKVFWTD 601 (699)
T ss_dssp SSCCEEECCCS--SSCSSCCCCEEETTEEEEEC
T ss_pred CCceEEEEecC--CcCCCceEeEEECCEEEEEe
Confidence 54434333211 11123345666788888885
No 285
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=32.96 E-value=1.7e+02 Score=28.81 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=15.2
Q ss_pred cceeEEEECCcEEEEEcc
Q 011542 21 SGHSAVNIGKSKVVVFGG 38 (483)
Q Consensus 21 ~~h~~~~~~~~~l~v~GG 38 (483)
..|++++..++.||.+|-
T Consensus 157 ~~hs~alt~~G~vy~wG~ 174 (473)
T 3of7_A 157 DNMSCALFSNGEVYAWGT 174 (473)
T ss_dssp SSEEEEEETTSCEEEEEC
T ss_pred CCEEEEEeCCCeEEEeeC
Confidence 368888888899999994
No 286
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=32.61 E-value=3.2e+02 Score=25.72 Aligned_cols=73 Identities=10% Similarity=-0.064 Sum_probs=43.4
Q ss_pred ECCEEEEEccccC----CCCCccEEEEECCCCeE-EEeecCCCCCCCCcccEEEEECCcE-EEEEecCCCCcCCccEEEE
Q 011542 85 IDCHMFIFGGRFG----SRRLGDFWVLDTDIWQW-SELTSFGDLPSPRDFAAASAIGNRK-IVMYGGWDGKKWLSDVYVL 158 (483)
Q Consensus 85 ~~~~iyv~GG~~~----~~~~~~~~~yd~~t~~W-~~l~~~~~~p~~r~~~~~~~~~~~~-iyv~GG~~~~~~~~~v~~y 158 (483)
.++++|+...... ....++++++|+.+++- ..++ .+...++++.-.|++ +++.+.. ..+++.+|
T Consensus 277 d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~------~g~~p~~i~~s~Dg~~~l~v~~~----~~~~V~Vi 346 (373)
T 2mad_H 277 SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS------LGHDVDAISVAQDGGPDLYALSA----GTEVLHIY 346 (373)
T ss_pred CCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE------CCCCcCeEEECCCCCeEEEEEcC----CCCeEEEE
Confidence 3578999754211 11346799999998765 3333 333345555555555 4444432 13679999
Q ss_pred ECCCCceEE
Q 011542 159 DTISLEWMQ 167 (483)
Q Consensus 159 d~~t~~W~~ 167 (483)
|..+.+=..
T Consensus 347 D~~t~~vv~ 355 (373)
T 2mad_H 347 DAGAGDQDQ 355 (373)
T ss_pred ECCCCCEEe
Confidence 998876554
No 287
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=32.23 E-value=3e+02 Score=26.05 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=14.7
Q ss_pred cccEEEEECCcEEEEEec
Q 011542 128 DFAAASAIGNRKIVMYGG 145 (483)
Q Consensus 128 ~~~~~~~~~~~~iyv~GG 145 (483)
..|++++..++.+|..|-
T Consensus 168 ~~hs~alt~~G~v~~wG~ 185 (389)
T 3kci_A 168 GAHSACVTAAGDLYTWGK 185 (389)
T ss_dssp SSEEEEEETTSCEEEEEC
T ss_pred cCeEEEEeCCCeEEEeCC
Confidence 467888888889999994
No 288
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=32.23 E-value=2.6e+02 Score=24.58 Aligned_cols=58 Identities=10% Similarity=0.065 Sum_probs=34.0
Q ss_pred cceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE-ECCEEEEEccccCCCCCccEEEEECCCCeEEE
Q 011542 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA-IDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSE 116 (483)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~ 116 (483)
+.+.++|+.+++-..+-... .+. ..-.+++. -+++.++.|+.++ .+.++|..+++-..
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~-------~~~-~~V~~v~~~~~~~~l~sgs~Dg-----~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQME-------QPG-EYISSVAWIKEGNYLAVGTSSA-----EVQLWDVQQQKRLR 103 (318)
T ss_dssp TEEEEEETTTCCEEEEEECC-------STT-CCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEE
T ss_pred CEEEEEECCCCCEEEEEEec-------CCC-CeEEEEEECCCCCEEEEEECCC-----cEEEeecCCceeEE
Confidence 35899999998876543221 111 11122222 2567777777553 47889998876543
No 289
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=31.03 E-value=3.4e+02 Score=25.46 Aligned_cols=26 Identities=12% Similarity=0.164 Sum_probs=16.7
Q ss_pred EECCcEEEEEcccCCCccccceEEEEcCCCc
Q 011542 27 NIGKSKVVVFGGLVDKRFLSDVVVYDIDNKL 57 (483)
Q Consensus 27 ~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~ 57 (483)
...++.+++.|+.++ .+.+||..+..
T Consensus 36 ~s~~g~~la~g~~dg-----~v~iw~~~~~~ 61 (447)
T 3dw8_B 36 FNHSGELLATGDKGG-----RVVIFQQEQEN 61 (447)
T ss_dssp ECSSSSEEEEEETTS-----EEEEEEECC--
T ss_pred ECCCCCEEEEEcCCC-----eEEEEEecCCC
Confidence 345677888887643 47788877654
No 290
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=30.88 E-value=5.9e+02 Score=28.27 Aligned_cols=185 Identities=14% Similarity=0.067 Sum_probs=96.9
Q ss_pred eeEEEEECCEEEEEccccCCCCCccEEEEECCCCeEEEeec--CCCCCCCCcccEEEEE--CCcEEEEEecCCCCcCCcc
Q 011542 79 FHIAVAIDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTS--FGDLPSPRDFAAASAI--GNRKIVMYGGWDGKKWLSD 154 (483)
Q Consensus 79 ~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~--~~~~p~~r~~~~~~~~--~~~~iyv~GG~~~~~~~~~ 154 (483)
++++....+.+ ++|.-........++.|+.....|..-.. .+.....-.++++++. .+...+|+|--. ......
T Consensus 336 GfSa~~t~d~~-~~GapG~~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GAP~-~~~~G~ 413 (1095)
T 3k6s_A 336 GFSAVFTPDGP-VLGAVGSFTWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAPR-YQHTGK 413 (1095)
T ss_dssp TSSEECCTTCC-EEEESCSTTTTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEETT-GGGTCE
T ss_pred cccceecCCcc-eEcccccCCccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEccc-ccccce
Confidence 44555555555 77765544445568888876554433221 1123333445665542 223456776432 223557
Q ss_pred EEEEECCCCceEEec-cCCCCCCCCcCceEEEeC------CEEEEEccCCCCC-CcccceecccccccccCC--CCCeEE
Q 011542 155 VYVLDTISLEWMQLP-VTGSVPPPRCGHTATMVE------KRLLIYGGRGGGG-PIMGDLWALKGLIEEENE--TPGWTQ 224 (483)
Q Consensus 155 v~~yd~~t~~W~~i~-~~~~~p~~r~~~~~~~~~------~~lyv~GG~~~~~-~~~~d~~~l~~~~~yd~~--~~~W~~ 224 (483)
+++|......|.... ..|.-....+|.+++..+ ..++++|.-.... ... -.+++|... ...|..
T Consensus 414 V~i~~~~~~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~------G~Vyvy~~~~~~~~~~~ 487 (1095)
T 3k6s_A 414 AVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRG------GQVSVCPLPRGWRRWWC 487 (1095)
T ss_dssp EEEEECCTTTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCC------BCEEEEECCSSTTCCCS
T ss_pred EEEEEecCCcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCcCCC------CEEEEEEeCCCCcceee
Confidence 899998888898764 245555667888888751 2576777432211 111 233444322 245763
Q ss_pred ec-cCCCC--CCCCeeeEEEEeCC-------EEEEEcCCCCCCCCcccceeeCcEEEEEcCCC-ce
Q 011542 225 LK-LPGQA--PSSRCGHTITSGGH-------YLLLFGGHGTGGWLSRYDIYYNDTIILDRLSA-QW 279 (483)
Q Consensus 225 ~~-~~g~~--p~~r~~~~~~~~~~-------~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~-~W 279 (483)
.. ..|.. +..|++.+++..+| .| ++|.-..+ .....+|+|.-... .|
T Consensus 488 ~~~l~g~~~~~~~~FG~sva~~gD~NgDG~~Dl-~VGAP~~~-------~~~G~vyi~~g~~~~g~ 545 (1095)
T 3k6s_A 488 DAVLYGEQGHPWGRFGAALTVLGDVNGDKLTDV-VIGAPGEE-------ENRGAVYLFHGVLGPSI 545 (1095)
T ss_dssp CSSCCCCCSCSSCCBTSCEEEEECSSSSSCCEE-EEECTTTT-------TSCCBEEEEEBCSSSCB
T ss_pred eEEeecccCCccccCccceEeecccCCCCCcCE-EEeCCcCC-------CCCCEEEEecCCCCCCc
Confidence 32 22222 46788888776321 34 44432211 13467899987655 45
No 291
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=30.60 E-value=4.8e+02 Score=27.13 Aligned_cols=151 Identities=11% Similarity=0.009 Sum_probs=77.1
Q ss_pred ECCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEE-CCcEEEEEecCCCCcCCccEEEEECCCC
Q 011542 85 IDCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAI-GNRKIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 85 ~~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
.+++||+.-. ..+.+.++++....-..+... .+..|+ .+++- .++.||+.-- .....++++++...
T Consensus 463 ~~g~LY~tD~-----~~~~I~v~d~dg~~~~~l~~~-~~~~P~---giavDp~~g~ly~td~----~~~~~I~~~~~dG~ 529 (699)
T 1n7d_A 463 IHSNIYWTDS-----VLGTVSVADTKGVKRKTLFRE-QGSKPR---AIVVDPVHGFMYWTDW----GTPAKIKKGGLNGV 529 (699)
T ss_dssp SSSBCEECCT-----TTSCEEEEBSSSCCEEEECCC-SSCCCC---CEECCSSSSCCEECCC----SSSCCEEBCCSSSC
T ss_pred eCCcEEEEec-----cCCeEEEEecCCCceEEEEeC-CCCCcc---eEEEccCCCcEEEccc----CCCCeEEEEeCCCC
Confidence 3678888632 234588999887654444321 122222 22332 2457887531 11256777777644
Q ss_pred ceEEeccCCCCCCCCcCceEEEe--CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCCCeeeEEE
Q 011542 164 EWMQLPVTGSVPPPRCGHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSSRCGHTIT 241 (483)
Q Consensus 164 ~W~~i~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~r~~~~~~ 241 (483)
.-+.+.. ..+. .-.++++. +++||+.-.. .+.++++|++...-..+... ........+++
T Consensus 530 ~~~~l~~-~~l~---~PnGlavd~~~~~LY~aD~~------------~~~I~~~d~dG~~~~~~~~~--~~~~~~P~gla 591 (699)
T 1n7d_A 530 DIYSLVT-ENIQ---WPNGITLDLLSGRLYWVDSK------------LHSISSIDVNGGNRKTILED--EKRLAHPFSLA 591 (699)
T ss_dssp CCCEESC-SSCS---SCCCEEECTTTCCEEEEETT------------TTEEEEECSSSSCCEEECCC--SSSCSSCCCCE
T ss_pred CeeEEEe-CCCC---CccEEEEeccCCEEEEEecC------------CCeEEEEccCCCceEEEEec--CCcCCCceEeE
Confidence 3333321 1111 11234443 5789987532 14456667765444443311 11112334566
Q ss_pred EeCCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCc
Q 011542 242 SGGHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQ 278 (483)
Q Consensus 242 ~~~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 278 (483)
+.++.||+.-.. .+.|.++|+.+.+
T Consensus 592 vd~~~lywtd~~------------~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 592 VFEDKVFWTDII------------NEAIFSANRLTGS 616 (699)
T ss_dssp EETTEEEEECST------------TTCEEEEETTTEE
T ss_pred EECCEEEEEeCC------------CCeEEEEEccCCC
Confidence 677889887532 2568889876544
No 292
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=30.04 E-value=3.5e+02 Score=25.40 Aligned_cols=148 Identities=11% Similarity=-0.015 Sum_probs=73.3
Q ss_pred EEEECCcEEEEEcccCCCccccceEEEEcCCCc---EEeeeecCCCCCCCCCCCCccee-EEEEE--CCEEEEEccccCC
Q 011542 25 AVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNKL---WFQPECTGNGSNGQVGPGPRAFH-IAVAI--DCHMFIFGGRFGS 98 (483)
Q Consensus 25 ~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~~---W~~~~~~~~~~~~~~~p~~R~~h-~~~~~--~~~iyv~GG~~~~ 98 (483)
+++-.+|.+||.+-... ..++++++.... |..-. +....|.+. .++.. ++.|++..+ .
T Consensus 142 vavD~~GnaYVt~s~~~----~~I~rV~pdG~~~~~~~~~~---------~~~~~~~G~nGIv~~pdg~~Liv~~~-~-- 205 (334)
T 2p9w_A 142 SAQDRDGNSYVAFALGM----PAIARVSADGKTVSTFAWES---------GNGGQRPGYSGITFDPHSNKLIAFGG-P-- 205 (334)
T ss_dssp EEECTTSCEEEEEEESS----CEEEEECTTSCCEEEEEECC---------CCSSSCCSCSEEEEETTTTEEEEESS-S--
T ss_pred eEECCCCCEEEeCCCCC----CeEEEEeCCCCEEeeeeecC---------CCcccccCcceEEEeCCCCEEEEEcC-C--
Confidence 33446678999765421 459999998653 43211 112233333 44454 456777755 2
Q ss_pred CCCccEEEEECCCCeEEEeecC--CCCCCCCcccE-EEEECCcEEEEEecCCCCcCCccEEEEECCCCceEEeccCCCCC
Q 011542 99 RRLGDFWVLDTDIWQWSELTSF--GDLPSPRDFAA-ASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWMQLPVTGSVP 175 (483)
Q Consensus 99 ~~~~~~~~yd~~t~~W~~l~~~--~~~p~~r~~~~-~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~i~~~~~~p 175 (483)
..++.||+.+.....++.. |........-. +..-.++++.++.-. .+..+.+-...+ |+.....+..|
T Consensus 206 ---g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~-----~~~~~~l~S~Dg-W~sa~~~g~~~ 276 (334)
T 2p9w_A 206 ---RALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGAR-----APYAISFRSWDN-WKSANIKKTKR 276 (334)
T ss_dssp ---SSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEE-----TTEEEEEECSST-TSEEEEEEEEC
T ss_pred ---CeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcC-----CCCEEEEECCCC-cceeEEeeeec
Confidence 3489999875332122211 11101111111 222235577444422 233455554444 98876554444
Q ss_pred C---CCcCceEEE----eCCEEEEEccCC
Q 011542 176 P---PRCGHTATM----VEKRLLIYGGRG 197 (483)
Q Consensus 176 ~---~r~~~~~~~----~~~~lyv~GG~~ 197 (483)
. ++.-.+.+. .+++||+..+.-
T Consensus 277 ~~~~~~g~tt~t~~~~~~~~~iYvv~~~f 305 (334)
T 2p9w_A 277 SELQNSGFTAVADYYQGSEQGLYAVSAFF 305 (334)
T ss_dssp GGGGSSCEEEEEEEEETTEEEEEEEECCG
T ss_pred CccccCceeEEEEeccccCCeEEEEeeec
Confidence 3 232233333 467999998653
No 293
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=29.12 E-value=4.5e+02 Score=26.89 Aligned_cols=129 Identities=8% Similarity=-0.059 Sum_probs=59.9
Q ss_pred ECCcEEEEEcccCCCccccceEEEE----cCCCcEEeeee---cCCCCCCCCCCCCc--ceeEEEEECC-EEEEEccccC
Q 011542 28 IGKSKVVVFGGLVDKRFLSDVVVYD----IDNKLWFQPEC---TGNGSNGQVGPGPR--AFHIAVAIDC-HMFIFGGRFG 97 (483)
Q Consensus 28 ~~~~~l~v~GG~~~~~~~~~~~~yd----~~~~~W~~~~~---~~~~~~~~~~p~~R--~~h~~~~~~~-~iyv~GG~~~ 97 (483)
..|+++++.. .+.......++.+| +.++++..+.. ... ...... .......-++ .|++......
T Consensus 261 SpD~~~~~~~-~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 334 (719)
T 1z68_A 261 VTDERVCLQW-LKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR-----TGWAGGFFVSTPVFSYDAISYYKIFSDKD 334 (719)
T ss_dssp SSSSEEEEEE-EESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS-----SSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred eCCCeEEEEE-eccccCeEEEEEEcccCCCCCCceEEEEecccccC-----CceEccccCCccEECCCCCeEEEEEEccC
Confidence 3556665552 22222335799999 77777665542 110 111110 0011222233 4555322211
Q ss_pred CCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCC-CCcCCccEEEEECCCC--ceEEec
Q 011542 98 SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWD-GKKWLSDVYVLDTISL--EWMQLP 169 (483)
Q Consensus 98 ~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~-~~~~~~~v~~yd~~t~--~W~~i~ 169 (483)
....++.+|..++....+.. ..... .......++.||+.+... .......+|..+..++ +.+.+.
T Consensus 335 --g~~~l~~~~~~~~~~~~lt~---~~~~v--~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~ 402 (719)
T 1z68_A 335 --GYKHIHYIKDTVENAIQITS---GKWEA--INIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVT 402 (719)
T ss_dssp --SCEEEEEESSCSTTCEECSC---SSSCE--EEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESS
T ss_pred --CceEEEEEECCCCceEeccc---CceEE--EEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceecc
Confidence 13568999998877666542 11111 122222444666665330 1122345777777555 345553
No 294
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=28.97 E-value=3.7e+02 Score=28.24 Aligned_cols=102 Identities=10% Similarity=0.022 Sum_probs=54.9
Q ss_pred cceEEEEcCC--CcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEcccc--C---CCCCccEEEEECCC-------
Q 011542 46 SDVVVYDIDN--KLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRF--G---SRRLGDFWVLDTDI------- 111 (483)
Q Consensus 46 ~~~~~yd~~~--~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~--~---~~~~~~~~~yd~~t------- 111 (483)
++++..|... ..|..+. .++........++.+|+....+ . .-....+...|..+
T Consensus 269 ~~~~~~~~~~~~~~~~~l~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 336 (711)
T 4hvt_A 269 YDNYILDTKYKNLKLQKIN------------MPSDATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESD 336 (711)
T ss_dssp EEEEEEECSSSSCEEEECC------------SCTTCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGG
T ss_pred eeEEEEcCCCCCCcceEee------------cCCcceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccc
Confidence 5666666553 5566652 2222222345688999976432 0 11234688888754
Q ss_pred -CeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCceE
Q 011542 112 -WQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLEWM 166 (483)
Q Consensus 112 -~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 166 (483)
..|+.+- .|.....-..+...++.+++..-.++ ...++++|+.+++|.
T Consensus 337 ~~~~~~~~----~~~~~~~l~~~~~~~~~l~~~~~~~~---~~~l~~~~~~~g~~~ 385 (711)
T 4hvt_A 337 KTSLKILF----TPTANEVFNFISTTKDRVFLATYDNV---VAKVVTFTLENEQWT 385 (711)
T ss_dssp CTTCEEEE----CCCTTEEEEEEEECSSCEEEEEEETT---EEEEEEECEETTEEC
T ss_pred cccceEEE----CCCCCCeEEEEEEECCEEEEEEEECC---EEEEEEEECCCCceE
Confidence 4688743 12222222223333336666543222 346888998888774
No 295
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=28.44 E-value=3e+02 Score=24.00 Aligned_cols=180 Identities=10% Similarity=-0.068 Sum_probs=92.3
Q ss_pred eEEEEE--CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEEC-CcEEEEEecCCCCcCCccEE
Q 011542 80 HIAVAI--DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIG-NRKIVMYGGWDGKKWLSDVY 156 (483)
Q Consensus 80 h~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~v~ 156 (483)
+.+++. +++||+.-.. .+.++++|+.+..-..+... .+ ..-+.+++-. ++.||+.-.. .+.+.
T Consensus 39 ~gi~~d~~~~~ly~~d~~-----~~~I~~~~~~g~~~~~~~~~-~~---~~p~~ia~d~~~~~lyv~d~~-----~~~I~ 104 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTDIS-----EPSIGRASLHGGEPTTIIRQ-DL---GSPEGIALDHLGRTIFWTDSQ-----LDRIE 104 (267)
T ss_dssp EEEEEETTTTEEEEEETT-----TTEEEEEESSSCCCEEEECT-TC---CCEEEEEEETTTTEEEEEETT-----TTEEE
T ss_pred EEEEEecCCCEEEEEECC-----CCEEEEEecCCCCcEEEEEC-CC---CCccEEEEEecCCeEEEEECC-----CCEEE
Confidence 445554 5688887432 24689999977643333211 11 1223444442 4689987542 35688
Q ss_pred EEECCCCceEEeccCCCCCCCCcCceEEEe--CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccCCCCCCC
Q 011542 157 VLDTISLEWMQLPVTGSVPPPRCGHTATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLPGQAPSS 234 (483)
Q Consensus 157 ~yd~~t~~W~~i~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~g~~p~~ 234 (483)
++++....-+.+... ....| ..+++. +++||+....... ..+.+++++...-+.+.. .. .
T Consensus 105 ~~~~~g~~~~~~~~~-~~~~P---~~i~vd~~~g~lyv~~~~~~~----------~~I~~~~~dg~~~~~~~~---~~-~ 166 (267)
T 1npe_A 105 VAKMDGTQRRVLFDT-GLVNP---RGIVTDPVRGNLYWTDWNRDN----------PKIETSHMDGTNRRILAQ---DN-L 166 (267)
T ss_dssp EEETTSCSCEEEECS-SCSSE---EEEEEETTTTEEEEEECCSSS----------CEEEEEETTSCCCEEEEC---TT-C
T ss_pred EEEcCCCCEEEEEEC-CCCCc---cEEEEeeCCCEEEEEECCCCC----------cEEEEEecCCCCcEEEEE---CC-C
Confidence 899875543333211 11112 234443 5799997532111 234444555443333321 11 1
Q ss_pred CeeeEEEEe--CCEEEEEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCCCCcceEEEEECCEEEEEc
Q 011542 235 RCGHTITSG--GHYLLLFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPPARAYHSMTCLGSLYLLFG 308 (483)
Q Consensus 235 r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~~R~~~~~~~~~~~i~v~G 308 (483)
.....+++. ++.||+.-.. .+.|+++|+....-..+... . ..-.+++..++.+|+.-
T Consensus 167 ~~P~gia~d~~~~~lyv~d~~------------~~~I~~~~~~g~~~~~~~~~--~---~~P~gi~~d~~~lyva~ 225 (267)
T 1npe_A 167 GLPNGLTFDAFSSQLCWVDAG------------THRAECLNPAQPGRRKVLEG--L---QYPFAVTSYGKNLYYTD 225 (267)
T ss_dssp SCEEEEEEETTTTEEEEEETT------------TTEEEEEETTEEEEEEEEEC--C---CSEEEEEEETTEEEEEE
T ss_pred CCCcEEEEcCCCCEEEEEECC------------CCEEEEEecCCCceEEEecC--C---CCceEEEEeCCEEEEEE
Confidence 223344443 5789886532 25689999875432222211 1 11245556688999864
No 296
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=27.29 E-value=4.3e+02 Score=25.50 Aligned_cols=134 Identities=8% Similarity=-0.041 Sum_probs=67.1
Q ss_pred CcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCCCccEEEEEC
Q 011542 30 KSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRRLGDFWVLDT 109 (483)
Q Consensus 30 ~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 109 (483)
++.||+.-.. ..++++|+.+++...+.. ...+-...++.-++.||+.--... .....+..++.
T Consensus 152 ~g~Lyv~D~~------~~I~~id~~~g~v~~~~~----------~~~~P~giavd~dG~lyVad~~~~-~~~~gv~~~~~ 214 (433)
T 4hw6_A 152 YDDLYWVGQR------DAFRHVDFVNQYVDIKTT----------NIGQCADVNFTLNGDMVVVDDQSS-DTNTGIYLFTR 214 (433)
T ss_dssp TCEEEEECBT------SCEEEEETTTTEEEEECC----------CCSCEEEEEECTTCCEEEEECCSC-TTSEEEEEECG
T ss_pred CCEEEEEeCC------CCEEEEECCCCEEEEeec----------CCCCccEEEECCCCCEEEEcCCCC-cccceEEEEEC
Confidence 3788887532 679999999888877641 112222222223456888753221 11123555554
Q ss_pred CCC-eE-EEeecCCCCCCCCcccEEEEEC-CcEEEEEecCCCCcCCccEEEEECCCCce-EEeccCCCCCCCCcCceEEE
Q 011542 110 DIW-QW-SELTSFGDLPSPRDFAAASAIG-NRKIVMYGGWDGKKWLSDVYVLDTISLEW-MQLPVTGSVPPPRCGHTATM 185 (483)
Q Consensus 110 ~t~-~W-~~l~~~~~~p~~r~~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W-~~i~~~~~~p~~r~~~~~~~ 185 (483)
... .+ ..++ ....-..+++.. ++.||+.-- ....+++||+.+.+- +.+...+..+. ...+++
T Consensus 215 ~~~~~~~~~~~------~~~~P~giavd~~~G~lyv~d~-----~~~~V~~~d~~~g~~~~~~~~~~~~~~---~~~ia~ 280 (433)
T 4hw6_A 215 ASGFTERLSLC------NARGAKTCAVHPQNGKIYYTRY-----HHAMISSYDPATGTLTEEEVMMDTKGS---NFHIVW 280 (433)
T ss_dssp GGTTCCEEEEE------ECSSBCCCEECTTTCCEEECBT-----TCSEEEEECTTTCCEEEEEEECSCCSS---CEEEEE
T ss_pred CCCeecccccc------ccCCCCEEEEeCCCCeEEEEEC-----CCCEEEEEECCCCeEEEEEeccCCCCC---cccEEE
Confidence 322 11 1222 111122334443 568888532 234699999987766 33322222211 123444
Q ss_pred e--CCEEEEEc
Q 011542 186 V--EKRLLIYG 194 (483)
Q Consensus 186 ~--~~~lyv~G 194 (483)
. ++.|||.-
T Consensus 281 dpdG~~LYvad 291 (433)
T 4hw6_A 281 HPTGDWAYIIY 291 (433)
T ss_dssp CTTSSEEEEEE
T ss_pred eCCCCEEEEEe
Confidence 3 34688874
No 297
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=27.10 E-value=4.9e+02 Score=26.11 Aligned_cols=114 Identities=4% Similarity=-0.127 Sum_probs=54.9
Q ss_pred CCcEEEEEcccCCCccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEEE-CCEEEEEccccCCCCCccEEEE
Q 011542 29 GKSKVVVFGGLVDKRFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVAI-DCHMFIFGGRFGSRRLGDFWVL 107 (483)
Q Consensus 29 ~~~~l~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~~-~~~iyv~GG~~~~~~~~~~~~y 107 (483)
.++.+++.|+.++ .+.++|..+++-...-..... ........-.+++.. +++.++.|+.++ .+.++
T Consensus 200 pdg~~las~s~D~-----~i~lwd~~~g~~~~~~~~~~~---~~~~h~~~V~~v~~spdg~~l~s~s~D~-----~v~lW 266 (611)
T 1nr0_A 200 PDGSLFASTGGDG-----TIVLYNGVDGTKTGVFEDDSL---KNVAHSGSVFGLTWSPDGTKIASASADK-----TIKIW 266 (611)
T ss_dssp TTSSEEEEEETTS-----CEEEEETTTCCEEEECBCTTS---SSCSSSSCEEEEEECTTSSEEEEEETTS-----EEEEE
T ss_pred CCCCEEEEEECCC-----cEEEEECCCCcEeeeeccccc---cccccCCCEEEEEECCCCCEEEEEeCCC-----eEEEE
Confidence 4556666666543 477788777654332100000 000011111222222 566677776543 47889
Q ss_pred ECCCCeEEEeecCCCCCCCCcc-cEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc
Q 011542 108 DTDIWQWSELTSFGDLPSPRDF-AAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE 164 (483)
Q Consensus 108 d~~t~~W~~l~~~~~~p~~r~~-~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 164 (483)
|+.+.+....-. ....... ...+.. ++..++.++.++ .+..+|+.+.+
T Consensus 267 d~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~l~s~s~d~-----~i~~~~~~~~~ 315 (611)
T 1nr0_A 267 NVATLKVEKTIP---VGTRIEDQQLGIIW-TKQALVSISANG-----FINFVNPELGS 315 (611)
T ss_dssp ETTTTEEEEEEE---CCSSGGGCEEEEEE-CSSCEEEEETTC-----CEEEEETTTTE
T ss_pred eCCCCceeeeec---CCCCccceeEEEEE-cCCEEEEEeCCC-----cEEEEeCCCCC
Confidence 998887654332 1111111 122223 335556665443 46778887765
No 298
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=26.72 E-value=4e+02 Score=24.99 Aligned_cols=226 Identities=13% Similarity=0.143 Sum_probs=103.9
Q ss_pred cceEEEEcCCCcEEeeeecCCCCCCCCCCCCcceeEEEE----ECCEEEEEccc------cCC--CCCccEEEEECC---
Q 011542 46 SDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRAFHIAVA----IDCHMFIFGGR------FGS--RRLGDFWVLDTD--- 110 (483)
Q Consensus 46 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~~h~~~~----~~~~iyv~GG~------~~~--~~~~~~~~yd~~--- 110 (483)
..+.++|+..+.=..+ ..+... .++........+.+ -.++|++.--. .+. ...+.+.+||+.
T Consensus 35 g~V~~~~~~~~~~~~~-~~~~~s--~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~ 111 (334)
T 2p9w_A 35 GRIEVYNPKTQSHFNV-VIDGAS--SNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSE 111 (334)
T ss_dssp TEEEEECTTTCCEEEE-CCTTTC--CSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCT
T ss_pred CEEEEEcCCCCeEEEE-ecCCcc--ccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCC
Confidence 4688899986654444 221100 00111112233344 14688886210 011 113569999987
Q ss_pred CC--eEEE-eecCCCCCCC-------Cc--ccEEEEECCcEEEEEecCCCCcCCccEEEEECCCCc---eEEeccCCCCC
Q 011542 111 IW--QWSE-LTSFGDLPSP-------RD--FAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISLE---WMQLPVTGSVP 175 (483)
Q Consensus 111 t~--~W~~-l~~~~~~p~~-------r~--~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~---W~~i~~~~~~p 175 (483)
++ .|.- ++. .... +. .-.+++-.+|.+||.+-.. +..++++++.... |-.-. +..
T Consensus 112 tg~~~~~~dL~~---~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~----~~~I~rV~pdG~~~~~~~~~~---~~~ 181 (334)
T 2p9w_A 112 NSKPVWSVNFEK---VQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG----MPAIARVSADGKTVSTFAWES---GNG 181 (334)
T ss_dssp TCCCSEEEESHH---HHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES----SCEEEEECTTSCCEEEEEECC---CCS
T ss_pred CCCEEEEecCcc---ccccccccccccccCCceeEECCCCCEEEeCCCC----CCeEEEEeCCCCEEeeeeecC---CCc
Confidence 44 4532 111 0001 21 2234444567899976532 1558999987543 43221 223
Q ss_pred CCCcCce-EEEe--CCEEEEEccCCCCCCcccceecccccccccCCCCCeEEeccC--CCC-C-CCCeeeEEEEeCCEEE
Q 011542 176 PPRCGHT-ATMV--EKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLKLP--GQA-P-SSRCGHTITSGGHYLL 248 (483)
Q Consensus 176 ~~r~~~~-~~~~--~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~~~--g~~-p-~~r~~~~~~~~~~~i~ 248 (483)
..+.+.. ++.. ++.|++..+ . ..+..+|+.+.....+... |.. . ..-.+....-.+++++
T Consensus 182 ~~~~G~nGIv~~pdg~~Liv~~~-~------------g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 182 GQRPGYSGITFDPHSNKLIAFGG-P------------RALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp SSCCSCSEEEEETTTTEEEEESS-S------------SSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred ccccCcceEEEeCCCCEEEEEcC-C------------CeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEE
Confidence 3454444 4444 346777665 2 1223345553322122211 211 1 1111111222688886
Q ss_pred EEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCCCCCCC---CCcceEEEE----ECCEEEEEccC
Q 011542 249 LFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIGNEPPP---ARAYHSMTC----LGSLYLLFGGF 310 (483)
Q Consensus 249 v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~~~~p~---~R~~~~~~~----~~~~i~v~GG~ 310 (483)
++.-.. +..+++--..+ |.........|. ++....+++ .+++||++.+.
T Consensus 249 lV~~~~------------~~~~~l~S~Dg-W~sa~~~g~~~~~~~~~g~tt~t~~~~~~~~~iYvv~~~ 304 (334)
T 2p9w_A 249 LVGARA------------PYAISFRSWDN-WKSANIKKTKRSELQNSGFTAVADYYQGSEQGLYAVSAF 304 (334)
T ss_dssp EEEEET------------TEEEEEECSST-TSEEEEEEEECGGGGSSCEEEEEEEEETTEEEEEEEECC
T ss_pred EEEcCC------------CCEEEEECCCC-cceeEEeeeecCccccCceeEEEEeccccCCeEEEEeee
Confidence 654321 23455544444 876544332222 233334444 57899998754
No 299
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=26.17 E-value=4.8e+02 Score=25.72 Aligned_cols=35 Identities=9% Similarity=-0.047 Sum_probs=21.0
Q ss_pred eeEEEECCcEEEEEc-ccCCCccccceEEEEcCCCcE
Q 011542 23 HSAVNIGKSKVVVFG-GLVDKRFLSDVVVYDIDNKLW 58 (483)
Q Consensus 23 h~~~~~~~~~l~v~G-G~~~~~~~~~~~~yd~~~~~W 58 (483)
|.+....++ |||-. |-..+..-..+.++|..+.+=
T Consensus 141 h~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 141 HTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred cceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 555556667 66522 222233347899999997753
No 300
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=25.39 E-value=64 Score=30.68 Aligned_cols=69 Identities=13% Similarity=0.165 Sum_probs=31.0
Q ss_pred eeEEEECCcEEEEEcccCCCccccceEEEEcCCC--cEEeeeecCCCCCCCCCCCCcceeEEEEECCEEEEEccccCCCC
Q 011542 23 HSAVNIGKSKVVVFGGLVDKRFLSDVVVYDIDNK--LWFQPECTGNGSNGQVGPGPRAFHIAVAIDCHMFIFGGRFGSRR 100 (483)
Q Consensus 23 h~~~~~~~~~l~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~p~~R~~h~~~~~~~~iyv~GG~~~~~~ 100 (483)
++..++.++.||+.+. + ..++++|..++ .|+... . + ...+.++.++.+|+.|+.++
T Consensus 2 ~ssP~v~~~~v~~gs~-d-----g~v~a~d~~tG~~~W~~~~--~--------~---~~s~p~~~~g~~~v~~s~dg--- 59 (369)
T 2hz6_A 2 SSTVTLPETLLFVSTL-D-----GSLHAVSKRTGSIKWTLKE--D--------P---VLQVPTHVEEPAFLPDPNDG--- 59 (369)
T ss_dssp ------CTTEEEEEET-T-----SEEEEEETTTCCEEEEEEC--C--------C---SCCCC-----CCEEECTTTC---
T ss_pred CCCCeeeCCEEEEEcC-C-----CEEEEEECCCCCEEEEecC--C--------C---ceecceEcCCCEEEEeCCCC---
Confidence 4445556677776543 1 35899998876 476532 1 0 01122344667888764332
Q ss_pred CccEEEEECCCC--eEE
Q 011542 101 LGDFWVLDTDIW--QWS 115 (483)
Q Consensus 101 ~~~~~~yd~~t~--~W~ 115 (483)
.++++|..++ .|.
T Consensus 60 --~l~a~d~~tG~~~w~ 74 (369)
T 2hz6_A 60 --SLYTLGSKNNEGLTK 74 (369)
T ss_dssp --CEEEC-----CCSEE
T ss_pred --EEEEEECCCCceeee
Confidence 4889998664 454
No 301
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=25.15 E-value=3.8e+02 Score=28.07 Aligned_cols=151 Identities=13% Similarity=0.032 Sum_probs=75.6
Q ss_pred CccEEEEECCC--CeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCC--C---CcCCccEEEEECCC--------Cce
Q 011542 101 LGDFWVLDTDI--WQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWD--G---KKWLSDVYVLDTIS--------LEW 165 (483)
Q Consensus 101 ~~~~~~yd~~t--~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~--~---~~~~~~v~~yd~~t--------~~W 165 (483)
.+.++..|... ..|.++. .|.. ...+...++.+|+....+ . ......+...|..+ ..|
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 340 (711)
T 4hvt_A 268 NYDNYILDTKYKNLKLQKIN----MPSD---ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSL 340 (711)
T ss_dssp CEEEEEEECSSSSCEEEECC----SCTT---CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTC
T ss_pred ceeEEEEcCCCCCCcceEee----cCCc---ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccc
Confidence 36678777653 6787774 3332 222223345898876433 1 11355688888765 469
Q ss_pred EEeccCCCCCCCCcCceEEEeCCEEEEEccCCCCCCcccceecccccccccCCCCCeEEec-cCCCCCCCCeeeEEEE--
Q 011542 166 MQLPVTGSVPPPRCGHTATMVEKRLLIYGGRGGGGPIMGDLWALKGLIEEENETPGWTQLK-LPGQAPSSRCGHTITS-- 242 (483)
Q Consensus 166 ~~i~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~d~~~l~~~~~yd~~~~~W~~~~-~~g~~p~~r~~~~~~~-- 242 (483)
+.+- ..-..+.-......++.|++..-... ...+..+|+.++.|.... . ..|... ..+...
T Consensus 341 ~~~~---~~~~~~~l~~~~~~~~~l~~~~~~~~----------~~~l~~~~~~~g~~~~~~~i--~lp~~~-~~~~~~~~ 404 (711)
T 4hvt_A 341 KILF---TPTANEVFNFISTTKDRVFLATYDNV----------VAKVVTFTLENEQWTKPVVL--KLPYQN-AIFGMSSY 404 (711)
T ss_dssp EEEE---CCCTTEEEEEEEECSSCEEEEEEETT----------EEEEEEECEETTEECCCEEE--CCCSTT-CEEEEECC
T ss_pred eEEE---CCCCCCeEEEEEEECCEEEEEEEECC----------EEEEEEEECCCCceEEEecc--CCCCCe-EEEEEeec
Confidence 8742 11112222233444667766543221 245566787777664221 1 233211 111111
Q ss_pred -eCCEEE-EEcCCCCCCCCcccceeeCcEEEEEcCCCceEEccCC
Q 011542 243 -GGHYLL-LFGGHGTGGWLSRYDIYYNDTIILDRLSAQWKRLPIG 285 (483)
Q Consensus 243 -~~~~i~-v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~v~~~ 285 (483)
.++.++ .+.+.. ....++.||+. ..++.+...
T Consensus 405 ~~~~~~~~~~ss~~----------~P~~~~~~d~~-~~~~~l~~~ 438 (711)
T 4hvt_A 405 EEEEEALITIENSI----------VPPTIYLWVKT-HELKIIRKA 438 (711)
T ss_dssp TTCSCEEEEEECSS----------SCCEEEEECTT-SCEEEEECC
T ss_pred CcCCEEEEEEecCC----------CCCEEEEEeCC-CcEEEEecC
Confidence 223333 333433 23578888887 677766543
No 302
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=23.13 E-value=4.2e+02 Score=23.96 Aligned_cols=64 Identities=5% Similarity=-0.020 Sum_probs=34.1
Q ss_pred CCEEEEEccccCCCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCcEEEEEecCCCCcCCccEEEEECCCC
Q 011542 86 DCHMFIFGGRFGSRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMYGGWDGKKWLSDVYVLDTISL 163 (483)
Q Consensus 86 ~~~iyv~GG~~~~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 163 (483)
++.+++.|+.++ .+.++|..+++-...-. . ....-.+++...++..++.||.++ .+.++|+...
T Consensus 87 ~~~~l~s~s~D~-----~v~lwd~~~~~~~~~~~---~-h~~~v~~v~~sp~~~~l~s~~~d~-----~i~~wd~~~~ 150 (343)
T 2xzm_R 87 ENCFAISSSWDK-----TLRLWDLRTGTTYKRFV---G-HQSEVYSVAFSPDNRQILSAGAER-----EIKLWNILGE 150 (343)
T ss_dssp STTEEEEEETTS-----EEEEEETTSSCEEEEEE---C-CCSCEEEEEECSSTTEEEEEETTS-----CEEEEESSSC
T ss_pred CCCEEEEEcCCC-----cEEEEECCCCcEEEEEc---C-CCCcEEEEEECCCCCEEEEEcCCC-----EEEEEeccCC
Confidence 456666666543 47888988775432211 1 111122333334556667777543 4677777643
No 303
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=21.04 E-value=2.6e+02 Score=26.08 Aligned_cols=65 Identities=22% Similarity=0.310 Sum_probs=39.6
Q ss_pred CCEEEEEccccC-----CCCCccEEEEECCCCeEEEeecCCCCCCCCcccEEEEECCc-EEEEEecCCCCcCCccEEEEE
Q 011542 86 DCHMFIFGGRFG-----SRRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNR-KIVMYGGWDGKKWLSDVYVLD 159 (483)
Q Consensus 86 ~~~iyv~GG~~~-----~~~~~~~~~yd~~t~~W~~l~~~~~~p~~r~~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd 159 (483)
++++|+....++ ....+.++++|+.+.+=... ++.+. -.+++.-.++ .+|+.++ +.+.+||
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~-----i~~~~-p~~ia~spdg~~l~v~n~-------~~v~v~D 331 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR-----IPGRD-ALSMTIDQQRNLMLTLDG-------GNVNVYD 331 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE-----EECTT-CCEEEEETTTTEEEEECS-------SCEEEEE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE-----EecCC-eeEEEECCCCCEEEEeCC-------CeEEEEE
Confidence 578998754221 11245799999998863322 22333 4455555443 6665441 7799999
Q ss_pred CCCC
Q 011542 160 TISL 163 (483)
Q Consensus 160 ~~t~ 163 (483)
..++
T Consensus 332 ~~t~ 335 (361)
T 2oiz_A 332 ISQP 335 (361)
T ss_dssp CSSS
T ss_pred CCCC
Confidence 9887
No 304
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=20.93 E-value=3.8e+02 Score=28.07 Aligned_cols=81 Identities=11% Similarity=0.076 Sum_probs=46.8
Q ss_pred ceEEceeCCCCCCCCCCCcceeEEEECCcEEEEEcccCCC----ccccceEEEEcCCCcEEeeeecCCCCCCCCCCCCcc
Q 011542 3 YWVRASSSDFGGTVPQPRSGHSAVNIGKSKVVVFGGLVDK----RFLSDVVVYDIDNKLWFQPECTGNGSNGQVGPGPRA 78 (483)
Q Consensus 3 ~W~~~~~~~~~g~~p~~R~~h~~~~~~~~~l~v~GG~~~~----~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~p~~R~ 78 (483)
.|+++. .+|.....|.+++..++.+|+..+-..+ .....+++++-...+|+.+...+. ..+..++
T Consensus 233 tW~~~~------~~p~~~~~~~~~~~~~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~-----~~~~~~~ 301 (737)
T 2cn3_A 233 TWKAVP------GQPKGLLPHHGVLASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPY-----SSSDNRF 301 (737)
T ss_dssp CCEECT------TCCCSSEEEEEEECTTSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCT-----TSTTCCS
T ss_pred ceEECC------CCCCcccceEEEECCCCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccCCCC-----CCccccc
Confidence 577765 3444444455554446788886543211 133578999999999999864321 0012345
Q ss_pred eeEEEEE----CCEEEEEcc
Q 011542 79 FHIAVAI----DCHMFIFGG 94 (483)
Q Consensus 79 ~h~~~~~----~~~iyv~GG 94 (483)
+++.+.+ .+.||+.+.
T Consensus 302 ~~~~i~v~p~~~~~ly~~~~ 321 (737)
T 2cn3_A 302 CFAGLAVDRQNPDIIMVTSM 321 (737)
T ss_dssp EEEEEEECTTCTTCEEEEEE
T ss_pred ccccEEEcCCCCCEEEEEec
Confidence 5554443 257887764
Done!