Query 011545
Match_columns 483
No_of_seqs 401 out of 2658
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 02:33:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03520 GldE gliding motilit 100.0 1E-57 2.2E-62 479.7 34.7 278 22-311 2-294 (408)
2 PRK11573 hypothetical protein; 100.0 8.1E-57 1.8E-61 473.3 32.4 276 25-312 2-295 (413)
3 COG4536 CorB Putative Mg2+ and 100.0 1.2E-57 2.7E-62 457.3 23.0 290 14-312 2-308 (423)
4 COG1253 TlyC Hemolysins and re 100.0 3.4E-53 7.5E-58 448.3 32.4 328 14-438 3-354 (429)
5 KOG2118 Predicted membrane pro 100.0 3E-35 6.5E-40 314.8 9.2 426 6-440 4-442 (498)
6 PRK15094 magnesium/cobalt effl 100.0 5.5E-28 1.2E-32 244.1 17.6 147 156-311 24-172 (292)
7 PF01595 DUF21: Domain of unkn 99.9 8.3E-27 1.8E-31 218.4 19.0 168 18-193 3-183 (183)
8 COG4535 CorC Putative Mg2+ and 99.9 2.1E-27 4.6E-32 226.5 11.9 180 151-425 19-200 (293)
9 TIGR00400 mgtE Mg2+ transporte 99.7 9.7E-17 2.1E-21 171.4 15.6 135 166-310 89-234 (449)
10 COG3448 CBS-domain-containing 99.7 8.9E-16 1.9E-20 151.3 20.6 137 166-310 202-354 (382)
11 COG2524 Predicted transcriptio 99.7 2.2E-16 4.8E-21 153.1 10.1 109 197-310 163-273 (294)
12 TIGR01302 IMP_dehydrog inosine 99.6 2.1E-15 4.5E-20 161.2 14.6 133 165-310 43-183 (450)
13 COG4109 Predicted transcriptio 99.6 2.6E-15 5.5E-20 151.1 12.1 114 193-310 170-288 (432)
14 COG2239 MgtE Mg/Co/Ni transpor 99.5 5.5E-14 1.2E-18 149.2 14.6 117 188-310 114-235 (451)
15 cd04603 CBS_pair_KefB_assoc Th 99.5 1.8E-13 3.9E-18 117.1 11.4 92 217-310 2-95 (111)
16 PRK05567 inosine 5'-monophosph 99.5 2.8E-13 6.1E-18 146.2 15.6 132 165-310 50-187 (486)
17 PRK10892 D-arabinose 5-phospha 99.5 1E-13 2.2E-18 141.9 11.4 105 204-310 200-308 (326)
18 cd04619 CBS_pair_6 The CBS dom 99.5 4.3E-13 9.3E-18 115.1 11.4 92 217-310 2-98 (114)
19 cd04641 CBS_pair_28 The CBS do 99.5 4.5E-13 9.7E-18 115.9 11.3 92 217-310 2-104 (120)
20 cd04605 CBS_pair_MET2_assoc Th 99.5 4.8E-13 1E-17 113.2 11.0 92 217-310 3-94 (110)
21 cd04623 CBS_pair_10 The CBS do 99.5 6.3E-13 1.4E-17 112.4 11.3 92 217-310 2-98 (113)
22 cd04596 CBS_pair_DRTGG_assoc T 99.4 7.5E-13 1.6E-17 112.2 11.4 90 217-310 3-92 (108)
23 PRK11543 gutQ D-arabinose 5-ph 99.4 2.7E-13 5.8E-18 138.3 10.2 104 205-310 196-302 (321)
24 cd04626 CBS_pair_13 The CBS do 99.4 5.7E-13 1.2E-17 113.1 10.6 92 217-310 2-96 (111)
25 cd04630 CBS_pair_17 The CBS do 99.4 7.4E-13 1.6E-17 113.3 11.3 93 217-310 2-99 (114)
26 cd04618 CBS_pair_5 The CBS dom 99.4 6.8E-13 1.5E-17 112.2 10.7 80 217-310 2-81 (98)
27 COG3620 Predicted transcriptio 99.4 4.3E-13 9.4E-18 122.0 9.6 119 185-310 39-167 (187)
28 cd04600 CBS_pair_HPP_assoc Thi 99.4 9E-13 2E-17 113.9 11.0 92 217-310 3-108 (124)
29 cd04590 CBS_pair_CorC_HlyC_ass 99.4 9.8E-13 2.1E-17 111.5 10.7 92 217-310 2-95 (111)
30 cd04593 CBS_pair_EriC_assoc_ba 99.4 1.2E-12 2.6E-17 112.0 10.9 92 217-310 2-97 (115)
31 cd04642 CBS_pair_29 The CBS do 99.4 1.6E-12 3.4E-17 113.5 11.5 92 217-310 2-110 (126)
32 cd04639 CBS_pair_26 The CBS do 99.4 1.5E-12 3.4E-17 110.3 11.0 92 217-310 2-95 (111)
33 cd04621 CBS_pair_8 The CBS dom 99.4 1.7E-12 3.6E-17 115.9 11.2 92 217-310 2-120 (135)
34 cd04803 CBS_pair_15 The CBS do 99.4 2.2E-12 4.8E-17 111.2 11.7 92 217-310 2-106 (122)
35 cd04624 CBS_pair_11 The CBS do 99.4 1.6E-12 3.4E-17 110.4 10.6 92 217-310 2-96 (112)
36 cd04643 CBS_pair_30 The CBS do 99.4 2E-12 4.3E-17 110.3 11.0 90 217-310 2-100 (116)
37 cd04631 CBS_pair_18 The CBS do 99.4 2.2E-12 4.7E-17 111.7 11.1 93 217-310 2-109 (125)
38 PRK07807 inosine 5-monophospha 99.4 1.6E-12 3.5E-17 139.7 12.2 101 204-310 87-187 (479)
39 cd04617 CBS_pair_4 The CBS dom 99.4 1.9E-12 4.1E-17 111.8 10.4 92 217-310 2-99 (118)
40 cd04627 CBS_pair_14 The CBS do 99.4 1.6E-12 3.6E-17 112.8 10.0 93 217-310 2-107 (123)
41 cd04599 CBS_pair_GGDEF_assoc2 99.4 2.5E-12 5.3E-17 107.7 10.5 89 217-310 2-90 (105)
42 cd04607 CBS_pair_NTP_transfera 99.4 3.2E-12 7E-17 109.0 11.3 91 218-310 4-97 (113)
43 cd04635 CBS_pair_22 The CBS do 99.4 3.7E-12 8.1E-17 109.7 11.6 92 217-310 2-106 (122)
44 cd04801 CBS_pair_M50_like This 99.4 1.4E-12 3.1E-17 111.3 8.8 92 217-310 2-98 (114)
45 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 4.1E-12 8.9E-17 107.3 11.3 91 217-310 2-95 (111)
46 PRK01862 putative voltage-gate 99.4 1.9E-12 4E-17 142.5 11.4 104 203-310 444-551 (574)
47 cd04629 CBS_pair_16 The CBS do 99.4 3.3E-12 7E-17 108.6 10.4 92 217-310 2-99 (114)
48 cd04636 CBS_pair_23 The CBS do 99.4 4.2E-12 9.2E-17 111.7 11.4 92 217-310 2-117 (132)
49 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 4.8E-12 1E-16 106.4 11.2 89 217-310 2-90 (106)
50 cd04640 CBS_pair_27 The CBS do 99.4 2.7E-12 5.8E-17 112.3 9.8 92 217-310 2-109 (126)
51 cd04601 CBS_pair_IMPDH This cd 99.4 5.1E-12 1.1E-16 106.5 11.1 91 217-310 3-94 (110)
52 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 4.9E-12 1.1E-16 106.5 11.0 91 217-310 3-93 (109)
53 cd04588 CBS_pair_CAP-ED_DUF294 99.4 5.2E-12 1.1E-16 106.8 11.0 91 217-310 2-94 (110)
54 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 5.1E-12 1.1E-16 106.7 10.9 91 217-310 2-95 (111)
55 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 5.4E-12 1.2E-16 106.8 10.8 92 217-310 2-97 (114)
56 cd04610 CBS_pair_ParBc_assoc T 99.4 7.5E-12 1.6E-16 105.2 11.4 89 217-310 3-91 (107)
57 cd04589 CBS_pair_CAP-ED_DUF294 99.4 6.5E-12 1.4E-16 106.6 10.9 91 217-310 2-96 (111)
58 cd04586 CBS_pair_BON_assoc Thi 99.4 4.8E-12 1E-16 111.8 10.5 92 217-310 3-120 (135)
59 cd04595 CBS_pair_DHH_polyA_Pol 99.3 6.8E-12 1.5E-16 106.3 10.9 91 217-310 3-95 (110)
60 cd04800 CBS_pair_CAP-ED_DUF294 99.3 7.5E-12 1.6E-16 106.0 10.8 91 217-310 2-96 (111)
61 cd04608 CBS_pair_PALP_assoc Th 99.3 1.7E-12 3.7E-17 114.0 7.0 92 217-310 3-107 (124)
62 cd04632 CBS_pair_19 The CBS do 99.3 7E-12 1.5E-16 109.4 10.9 91 217-309 2-109 (128)
63 cd04606 CBS_pair_Mg_transporte 99.3 5.6E-12 1.2E-16 107.0 9.9 86 221-310 2-92 (109)
64 cd04602 CBS_pair_IMPDH_2 This 99.3 8.2E-12 1.8E-16 107.0 10.7 92 217-310 3-98 (114)
65 cd04615 CBS_pair_2 The CBS dom 99.3 9.2E-12 2E-16 105.8 10.8 91 218-310 3-97 (113)
66 PLN02274 inosine-5'-monophosph 99.3 1.3E-11 2.8E-16 133.6 14.2 111 191-310 90-204 (505)
67 cd04585 CBS_pair_ACT_assoc2 Th 99.3 1.1E-11 2.3E-16 106.1 10.9 91 217-310 2-106 (122)
68 cd04594 CBS_pair_EriC_assoc_ar 99.3 1.1E-11 2.3E-16 104.6 10.8 86 219-310 4-89 (104)
69 cd04620 CBS_pair_7 The CBS dom 99.3 9.8E-12 2.1E-16 106.2 10.6 91 217-310 2-99 (115)
70 cd04614 CBS_pair_1 The CBS dom 99.3 1.3E-11 2.9E-16 103.5 10.9 79 217-310 2-80 (96)
71 cd04587 CBS_pair_CAP-ED_DUF294 99.3 9.4E-12 2E-16 105.6 10.1 91 217-310 2-97 (113)
72 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 9.6E-12 2.1E-16 105.5 10.1 92 217-310 3-98 (114)
73 cd04638 CBS_pair_25 The CBS do 99.3 1.8E-11 4E-16 103.1 11.8 90 217-310 2-91 (106)
74 cd04591 CBS_pair_EriC_assoc_eu 99.3 1.2E-11 2.6E-16 105.4 10.7 87 216-310 2-90 (105)
75 PRK07107 inosine 5-monophospha 99.3 6.3E-12 1.4E-16 135.8 10.9 112 191-310 87-202 (502)
76 cd04637 CBS_pair_24 The CBS do 99.3 1.1E-11 2.4E-16 107.0 9.9 91 217-310 2-106 (122)
77 cd04802 CBS_pair_3 The CBS dom 99.3 1.8E-11 4E-16 103.8 10.7 91 217-310 2-97 (112)
78 cd04584 CBS_pair_ACT_assoc Thi 99.3 2.5E-11 5.3E-16 104.3 11.4 92 217-310 2-106 (121)
79 cd04625 CBS_pair_12 The CBS do 99.3 2E-11 4.3E-16 103.6 10.7 91 217-310 2-97 (112)
80 cd04622 CBS_pair_9 The CBS dom 99.3 2.5E-11 5.5E-16 102.9 11.2 91 217-310 2-97 (113)
81 PTZ00314 inosine-5'-monophosph 99.3 2.2E-11 4.7E-16 131.7 12.7 110 192-310 87-200 (495)
82 TIGR01137 cysta_beta cystathio 99.3 1.5E-11 3.2E-16 131.4 11.2 101 203-310 332-436 (454)
83 cd04609 CBS_pair_PALP_assoc2 T 99.3 3.5E-11 7.6E-16 101.2 10.5 89 217-310 2-94 (110)
84 cd04633 CBS_pair_20 The CBS do 99.3 2.3E-11 5.1E-16 104.6 9.6 91 217-310 2-106 (121)
85 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 3.1E-11 6.8E-16 129.7 12.2 99 205-310 87-185 (475)
86 COG0517 FOG: CBS domain [Gener 99.2 6.1E-11 1.3E-15 101.0 10.7 97 209-310 2-102 (117)
87 cd02205 CBS_pair The CBS domai 99.2 7.8E-11 1.7E-15 97.9 10.9 92 217-310 2-97 (113)
88 TIGR00393 kpsF KpsF/GutQ famil 99.2 3.6E-11 7.9E-16 119.3 9.3 102 206-310 155-259 (268)
89 cd04634 CBS_pair_21 The CBS do 99.2 8.5E-11 1.8E-15 105.5 10.7 91 217-310 2-128 (143)
90 cd04598 CBS_pair_GGDEF_assoc T 99.2 5.8E-11 1.3E-15 101.8 8.9 91 217-310 2-103 (119)
91 COG2905 Predicted signal-trans 99.1 1.2E-10 2.6E-15 124.0 7.9 106 201-310 144-253 (610)
92 cd04592 CBS_pair_EriC_assoc_eu 99.0 1.2E-09 2.6E-14 97.9 8.0 93 217-311 2-118 (133)
93 PRK14869 putative manganese-de 99.0 3.8E-09 8.2E-14 115.7 12.4 102 205-310 67-286 (546)
94 PF00571 CBS: CBS domain CBS d 98.7 4.7E-08 1E-12 73.9 7.2 38 273-310 1-38 (57)
95 PF00571 CBS: CBS domain CBS d 98.6 4.6E-08 1E-12 74.0 4.0 55 208-266 1-55 (57)
96 KOG1764 5'-AMP-activated prote 98.5 4E-07 8.7E-12 95.7 11.0 92 217-310 238-341 (381)
97 PRK10070 glycine betaine trans 98.5 8.6E-07 1.9E-11 93.8 12.6 101 206-310 274-375 (400)
98 TIGR01186 proV glycine betaine 98.3 4.5E-06 9.7E-11 87.4 12.8 88 219-310 253-340 (363)
99 KOG2550 IMP dehydrogenase/GMP 98.3 1.5E-06 3.2E-11 90.0 8.4 136 166-310 72-210 (503)
100 KOG0474 Cl- channel CLC-7 and 98.3 7.6E-07 1.7E-11 96.1 6.4 105 203-310 579-729 (762)
101 TIGR00400 mgtE Mg2+ transporte 98.0 2.6E-06 5.6E-11 91.5 3.2 100 203-308 192-291 (449)
102 cd04603 CBS_pair_KefB_assoc Th 97.9 1.9E-05 4.1E-10 67.2 5.0 56 205-264 55-110 (111)
103 COG2524 Predicted transcriptio 97.8 3.4E-05 7.3E-10 76.0 6.1 41 270-310 171-211 (294)
104 cd04597 CBS_pair_DRTGG_assoc2 97.8 5.6E-05 1.2E-09 65.3 6.1 55 206-264 58-112 (113)
105 cd04801 CBS_pair_M50_like This 97.7 4.1E-05 9E-10 65.0 5.0 58 205-264 56-113 (114)
106 cd04604 CBS_pair_KpsF_GutQ_ass 97.7 5.2E-05 1.1E-09 63.9 5.4 59 202-264 55-113 (114)
107 PRK07107 inosine 5-monophospha 97.7 9.8E-05 2.1E-09 80.4 8.3 101 203-307 158-260 (502)
108 cd04617 CBS_pair_4 The CBS dom 97.7 6.2E-05 1.3E-09 64.7 5.1 61 203-264 55-117 (118)
109 cd04597 CBS_pair_DRTGG_assoc2 97.7 0.0001 2.2E-09 63.7 6.4 40 271-310 58-97 (113)
110 cd04619 CBS_pair_6 The CBS dom 97.6 6.6E-05 1.4E-09 64.0 4.9 57 204-264 57-113 (114)
111 PRK14869 putative manganese-de 97.6 5.4E-05 1.2E-09 83.2 5.2 103 204-309 244-375 (546)
112 KOG0475 Cl- channel CLC-3 and 97.6 0.00028 6E-09 76.9 9.4 102 208-310 545-678 (696)
113 cd04618 CBS_pair_5 The CBS dom 97.5 0.00013 2.8E-09 61.4 4.8 46 218-264 52-97 (98)
114 COG3448 CBS-domain-containing 97.5 9.8E-05 2.1E-09 74.0 4.6 41 270-310 244-284 (382)
115 cd04607 CBS_pair_NTP_transfera 97.5 0.00015 3.3E-09 61.4 5.0 56 205-264 57-112 (113)
116 cd04585 CBS_pair_ACT_assoc2 Th 97.5 0.00015 3.3E-09 61.5 5.0 58 203-264 64-121 (122)
117 PRK07807 inosine 5-monophospha 97.5 0.00024 5.3E-09 76.9 7.3 96 206-310 148-247 (479)
118 cd04600 CBS_pair_HPP_assoc Thi 97.4 0.00019 4.1E-09 61.6 5.0 58 203-264 66-123 (124)
119 cd04620 CBS_pair_7 The CBS dom 97.4 0.0002 4.4E-09 60.7 5.2 57 204-264 56-114 (115)
120 cd04625 CBS_pair_12 The CBS do 97.4 0.00027 5.9E-09 59.5 5.8 55 205-264 57-111 (112)
121 cd04582 CBS_pair_ABC_OpuCA_ass 97.4 0.00027 5.9E-09 58.9 5.7 54 207-264 52-105 (106)
122 cd04640 CBS_pair_27 The CBS do 97.4 0.00012 2.6E-09 63.7 3.4 60 204-264 62-125 (126)
123 cd04610 CBS_pair_ParBc_assoc T 97.4 0.00023 4.9E-09 59.3 5.0 56 205-264 51-106 (107)
124 cd04627 CBS_pair_14 The CBS do 97.4 0.00026 5.6E-09 61.1 5.1 52 208-263 70-121 (123)
125 KOG1764 5'-AMP-activated prote 97.4 0.00074 1.6E-08 71.3 9.4 97 213-310 159-268 (381)
126 cd04596 CBS_pair_DRTGG_assoc T 97.4 0.00025 5.5E-09 59.6 4.8 57 204-264 51-107 (108)
127 cd04587 CBS_pair_CAP-ED_DUF294 97.3 0.00032 7E-09 59.0 5.2 55 206-264 58-112 (113)
128 PRK05567 inosine 5'-monophosph 97.3 0.00048 1E-08 74.9 7.7 100 205-310 146-248 (486)
129 cd04615 CBS_pair_2 The CBS dom 97.3 0.00033 7.2E-09 59.0 5.1 57 204-264 56-112 (113)
130 cd04623 CBS_pair_10 The CBS do 97.3 0.00033 7.2E-09 58.7 4.7 55 205-264 58-112 (113)
131 cd04630 CBS_pair_17 The CBS do 97.3 0.00034 7.5E-09 59.4 4.8 56 204-264 58-113 (114)
132 cd04631 CBS_pair_18 The CBS do 97.3 0.00031 6.8E-09 60.3 4.6 57 204-264 68-124 (125)
133 cd04613 CBS_pair_SpoIVFB_EriC_ 97.3 0.00033 7.1E-09 58.9 4.5 57 205-264 57-113 (114)
134 TIGR01303 IMP_DH_rel_1 IMP deh 97.3 0.00065 1.4E-08 73.6 7.9 98 206-310 146-245 (475)
135 cd04602 CBS_pair_IMPDH_2 This 97.3 0.00038 8.2E-09 59.2 4.8 57 206-264 57-113 (114)
136 cd04586 CBS_pair_BON_assoc Thi 97.3 0.00041 8.8E-09 61.0 5.1 57 203-264 78-134 (135)
137 PRK10892 D-arabinose 5-phospha 97.3 0.00038 8.2E-09 71.4 5.6 58 203-265 266-323 (326)
138 PLN02274 inosine-5'-monophosph 97.3 0.00084 1.8E-08 73.3 8.6 102 204-307 161-266 (505)
139 cd04622 CBS_pair_9 The CBS dom 97.3 0.00042 9.2E-09 58.3 4.9 56 205-264 57-112 (113)
140 PRK11543 gutQ D-arabinose 5-ph 97.2 0.0004 8.8E-09 70.9 5.7 58 204-265 261-318 (321)
141 cd04601 CBS_pair_IMPDH This cd 97.2 0.00053 1.2E-08 57.3 5.3 56 205-264 53-109 (110)
142 cd04593 CBS_pair_EriC_assoc_ba 97.2 0.00051 1.1E-08 58.3 5.2 56 206-264 58-114 (115)
143 COG0517 FOG: CBS domain [Gener 97.2 0.00074 1.6E-08 57.1 6.1 53 207-263 63-117 (117)
144 cd04633 CBS_pair_20 The CBS do 97.2 0.00041 8.8E-09 59.2 4.5 57 203-264 64-120 (121)
145 PTZ00314 inosine-5'-monophosph 97.2 0.00089 1.9E-08 73.0 8.1 61 204-266 157-217 (495)
146 smart00116 CBS Domain in cysta 97.2 0.00098 2.1E-08 46.4 5.7 31 280-310 1-31 (49)
147 cd04626 CBS_pair_13 The CBS do 97.2 0.00049 1.1E-08 57.9 4.9 55 205-264 56-110 (111)
148 cd04621 CBS_pair_8 The CBS dom 97.2 0.00043 9.4E-09 61.5 4.7 56 204-264 79-134 (135)
149 cd04641 CBS_pair_28 The CBS do 97.2 0.00055 1.2E-08 58.8 5.2 52 209-264 68-119 (120)
150 cd04803 CBS_pair_15 The CBS do 97.2 0.00051 1.1E-08 58.7 4.9 58 203-264 64-121 (122)
151 cd04606 CBS_pair_Mg_transporte 97.2 0.00053 1.1E-08 57.7 4.9 57 205-265 52-108 (109)
152 cd04635 CBS_pair_22 The CBS do 97.2 0.0005 1.1E-08 58.8 4.8 57 204-264 65-121 (122)
153 cd04594 CBS_pair_EriC_assoc_ar 97.2 0.00055 1.2E-08 57.3 4.9 54 206-264 50-103 (104)
154 cd04612 CBS_pair_SpoIVFB_EriC_ 97.2 0.00065 1.4E-08 56.8 5.3 55 206-264 56-110 (111)
155 COG3620 Predicted transcriptio 97.2 0.00049 1.1E-08 63.5 4.7 40 271-310 65-104 (187)
156 cd04589 CBS_pair_CAP-ED_DUF294 97.2 0.00053 1.2E-08 57.7 4.7 56 204-264 55-110 (111)
157 cd04629 CBS_pair_16 The CBS do 97.2 0.00052 1.1E-08 57.8 4.6 56 204-264 58-113 (114)
158 cd04636 CBS_pair_23 The CBS do 97.2 0.00048 1E-08 60.3 4.5 56 204-264 76-131 (132)
159 cd04611 CBS_pair_PAS_GGDEF_DUF 97.2 0.00064 1.4E-08 56.9 5.0 57 204-264 54-110 (111)
160 cd04583 CBS_pair_ABC_OpuCA_ass 97.2 0.00064 1.4E-08 56.7 5.0 55 206-264 54-108 (109)
161 cd04639 CBS_pair_26 The CBS do 97.1 0.00055 1.2E-08 57.5 4.5 55 206-264 56-110 (111)
162 cd04595 CBS_pair_DHH_polyA_Pol 97.1 0.00059 1.3E-08 57.3 4.5 56 204-264 54-109 (110)
163 cd04643 CBS_pair_30 The CBS do 97.1 0.0005 1.1E-08 58.1 3.9 55 204-264 61-115 (116)
164 cd04584 CBS_pair_ACT_assoc Thi 97.1 0.00057 1.2E-08 58.2 4.3 58 202-264 63-120 (121)
165 cd04599 CBS_pair_GGDEF_assoc2 97.1 0.00068 1.5E-08 56.2 4.5 55 205-264 50-104 (105)
166 smart00116 CBS Domain in cysta 97.1 0.0011 2.3E-08 46.2 4.7 46 218-265 2-47 (49)
167 cd04614 CBS_pair_1 The CBS dom 97.1 0.00087 1.9E-08 55.9 5.0 45 218-264 51-95 (96)
168 cd04802 CBS_pair_3 The CBS dom 97.0 0.00084 1.8E-08 56.5 4.7 56 204-264 56-111 (112)
169 TIGR03520 GldE gliding motilit 97.0 0.12 2.7E-06 55.1 22.0 90 205-299 254-350 (408)
170 cd04592 CBS_pair_EriC_assoc_eu 97.0 0.002 4.4E-08 57.5 7.3 31 280-310 2-32 (133)
171 cd04637 CBS_pair_24 The CBS do 97.0 0.0008 1.7E-08 57.6 4.3 55 206-264 67-121 (122)
172 cd04800 CBS_pair_CAP-ED_DUF294 97.0 0.00096 2.1E-08 56.0 4.5 55 205-264 56-110 (111)
173 cd04642 CBS_pair_29 The CBS do 97.0 0.0011 2.5E-08 57.4 5.1 51 210-264 75-125 (126)
174 cd04624 CBS_pair_11 The CBS do 97.0 0.0016 3.5E-08 54.7 5.7 56 205-264 56-111 (112)
175 cd04632 CBS_pair_19 The CBS do 96.9 0.0011 2.3E-08 57.5 4.6 58 204-264 69-127 (128)
176 cd04605 CBS_pair_MET2_assoc Th 96.9 0.002 4.3E-08 54.0 5.9 54 207-264 56-109 (110)
177 cd04588 CBS_pair_CAP-ED_DUF294 96.9 0.0014 3.1E-08 54.9 4.8 55 206-264 55-109 (110)
178 TIGR01137 cysta_beta cystathio 96.9 0.0026 5.6E-08 68.2 7.6 41 270-310 334-374 (454)
179 cd04608 CBS_pair_PALP_assoc Th 96.9 0.0042 9E-08 54.3 7.6 32 279-310 2-33 (124)
180 cd04590 CBS_pair_CorC_HlyC_ass 96.8 0.0012 2.7E-08 55.4 4.1 54 206-264 57-110 (111)
181 COG2905 Predicted signal-trans 96.8 0.0016 3.4E-08 70.6 5.1 76 185-267 192-270 (610)
182 COG4175 ProV ABC-type proline/ 96.7 0.0047 1E-07 63.2 7.8 105 193-310 261-365 (386)
183 cd04598 CBS_pair_GGDEF_assoc T 96.7 0.002 4.3E-08 54.8 4.3 57 204-264 59-118 (119)
184 cd04591 CBS_pair_EriC_assoc_eu 96.7 0.0022 4.7E-08 54.3 4.5 49 211-264 56-104 (105)
185 TIGR03415 ABC_choXWV_ATP choli 96.7 0.0055 1.2E-07 64.7 8.2 97 198-310 266-363 (382)
186 TIGR00393 kpsF KpsF/GutQ famil 96.6 0.0043 9.3E-08 61.5 6.6 40 271-310 155-195 (268)
187 PRK01862 putative voltage-gate 96.5 0.0053 1.2E-07 68.0 7.2 41 270-310 446-486 (574)
188 cd04634 CBS_pair_21 The CBS do 96.4 0.0053 1.1E-07 54.8 5.4 56 204-264 87-142 (143)
189 cd04609 CBS_pair_PALP_assoc2 T 96.4 0.004 8.7E-08 51.8 4.0 54 205-264 56-109 (110)
190 PRK15094 magnesium/cobalt effl 96.3 0.0047 1E-07 62.9 5.1 85 207-297 134-227 (292)
191 TIGR01302 IMP_dehydrog inosine 96.3 0.0042 9E-08 67.0 4.9 60 204-266 141-200 (450)
192 cd02205 CBS_pair The CBS domai 96.3 0.0086 1.9E-07 49.1 5.7 53 208-264 60-112 (113)
193 cd04638 CBS_pair_25 The CBS do 96.3 0.005 1.1E-07 51.4 4.2 53 207-264 53-105 (106)
194 COG2239 MgtE Mg/Co/Ni transpor 95.4 0.015 3.3E-07 62.5 4.1 61 202-266 192-252 (451)
195 COG4109 Predicted transcriptio 94.3 0.037 8E-07 57.2 3.6 60 203-266 246-305 (432)
196 TIGR01186 proV glycine betaine 93.4 0.12 2.6E-06 54.3 5.4 57 206-267 302-358 (363)
197 KOG2550 IMP dehydrogenase/GMP 93.1 0.089 1.9E-06 55.4 3.9 60 202-265 167-226 (503)
198 PRK11573 hypothetical protein; 91.8 0.36 7.7E-06 51.7 6.5 84 209-298 258-350 (413)
199 PRK10070 glycine betaine trans 91.3 0.28 6E-06 52.3 5.0 59 205-268 336-394 (400)
200 COG1253 TlyC Hemolysins and re 87.3 1.4 3E-05 47.4 6.7 40 271-310 206-247 (429)
201 COG1125 OpuBA ABC-type proline 85.0 1.9 4.1E-05 43.5 5.8 83 218-310 189-292 (309)
202 COG4536 CorB Putative Mg2+ and 74.6 4.4 9.5E-05 42.7 4.7 60 204-265 263-322 (423)
203 KOG0474 Cl- channel CLC-7 and 71.8 3.4 7.5E-05 46.1 3.3 53 209-265 693-745 (762)
204 PF01595 DUF21: Domain of unkn 65.6 1.1E+02 0.0024 28.0 14.6 16 143-158 128-143 (183)
205 TIGR03415 ABC_choXWV_ATP choli 65.0 5.6 0.00012 42.2 3.2 56 204-266 324-379 (382)
206 KOG0476 Cl- channel CLC-2 and 64.0 18 0.00039 41.5 6.9 40 271-310 588-627 (931)
207 KOG0476 Cl- channel CLC-2 and 61.8 6.6 0.00014 44.8 3.1 58 205-265 587-645 (931)
208 COG1125 OpuBA ABC-type proline 54.9 12 0.00025 38.1 3.2 59 204-264 247-307 (309)
209 COG4535 CorC Putative Mg2+ and 52.2 37 0.0008 34.0 6.1 88 206-299 133-229 (293)
210 KOG0475 Cl- channel CLC-3 and 51.8 16 0.00034 41.0 3.9 54 208-266 641-694 (696)
211 PHA02975 hypothetical protein; 42.3 42 0.0009 26.9 3.9 29 3-31 32-60 (69)
212 COG4175 ProV ABC-type proline/ 34.4 33 0.00071 35.9 2.8 47 217-266 336-382 (386)
213 COG2216 KdpB High-affinity K+ 32.5 45 0.00096 37.0 3.5 34 230-265 417-450 (681)
214 PF03563 Bunya_G2: Bunyavirus 31.9 1.2E+02 0.0025 30.8 6.0 25 135-159 210-234 (285)
215 TIGR00811 sit silicon transpor 25.9 83 0.0018 34.3 4.1 149 8-167 245-431 (545)
216 PF07811 TadE: TadE-like prote 25.3 1.8E+02 0.004 20.2 4.7 41 10-53 1-41 (43)
217 PHA02650 hypothetical protein; 22.9 1.3E+02 0.0029 24.8 3.9 8 3-10 32-39 (81)
218 PF03842 Silic_transp: Silicon 22.8 1.8E+02 0.0038 31.4 5.8 145 8-167 246-432 (512)
219 PF02419 PsbL: PsbL protein; 21.3 1.4E+02 0.003 21.1 3.1 18 14-31 18-35 (37)
220 CHL00038 psbL photosystem II p 20.9 1.3E+02 0.0027 21.3 2.9 18 14-31 19-36 (38)
221 PF15284 PAGK: Phage-encoded v 20.9 1.1E+02 0.0024 24.0 2.9 20 18-37 7-26 (61)
No 1
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00 E-value=1e-57 Score=479.74 Aligned_cols=278 Identities=27% Similarity=0.463 Sum_probs=243.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhhhhHHhHchHHhhchhHHHHHHHHHHHHHHHHHHHHH----hhh
Q 011545 22 IALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLD----KLV 97 (483)
Q Consensus 22 l~Ll~lsafFsg~E~Al~Sl~~~rL~~la~~g~~~~~~~A~~ll~l~~~~~~~L~tiliGn~l~~~~~~~~~~----~~~ 97 (483)
++|+++||||||+|+|++|+++.|++.++++|++ +|+++++++++|+++|+|+|+||+++|.+++.+.. .++
T Consensus 2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~----~a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~ 77 (408)
T TIGR03520 2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSK----KEQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF 77 (408)
T ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568899999999999999999999999999875 57889999999999999999999999987654432 222
Q ss_pred hh----H----HHHHHHHHHHHHHHhhcchHHHHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh---hCCCcccc
Q 011545 98 PP----W----AAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLM---LGKGHAVL 166 (483)
Q Consensus 98 ~~----~----~a~li~t~lilvfGEiiPK~la~~~p~~ia~~~a~~l~~l~~l~~Plv~~l~~i~~~l---lg~~~~~~ 166 (483)
+. + .++++.|+++++|||++||++|.+||++++.++++++++++++|||++|+++++++++ +|... ..
T Consensus 78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~-~~ 156 (408)
T TIGR03520 78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQK-SN 156 (408)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CC
Confidence 21 1 2344567889999999999999999999999999999999999999999999988765 45443 45
Q ss_pred cCHHHHHHHHhhhccccccCCCCCHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccc
Q 011545 167 LRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVY 246 (483)
Q Consensus 167 ~s~eEL~~Lv~~~~~e~~e~G~L~~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVv 246 (483)
+|++||+.+++. ++++| ++++|++|++|+++|++++|+|+||||.++++++.+++++ ++++.+.+++|||+|||
T Consensus 157 ~t~eEl~~lv~~----~~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~ 230 (408)
T TIGR03520 157 ISVDQLSQALEL----TDEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVY 230 (408)
T ss_pred CCHHHHHHHHHh----HhhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEE
Confidence 899999999984 44556 6899999999999999999999999999999999999998 99999999999999999
Q ss_pred cCCCCcEEEEEEchhhhccccccccchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEecC
Q 011545 247 SGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL 311 (483)
Q Consensus 247 d~d~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe~ 311 (483)
+++.|+++|+|+.||++.....+..++.++ ++++.+||+++++.++++.|++++.|+++|+|||
T Consensus 231 ~~~~d~ivGiv~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~ 294 (408)
T TIGR03520 231 KETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEY 294 (408)
T ss_pred cCCCCceEEEEEHHHHHhHhccCCCCHHHH-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCC
Confidence 987789999999999986544334467887 5788999999999999999999999999999995
No 2
>PRK11573 hypothetical protein; Provisional
Probab=100.00 E-value=8.1e-57 Score=473.26 Aligned_cols=276 Identities=21% Similarity=0.349 Sum_probs=239.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhhhhHHhHchHHhhchhHHHHHHHHHHHHHHHHHHHHHh----hhh--
Q 011545 25 VCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDK----LVP-- 98 (483)
Q Consensus 25 l~lsafFsg~E~Al~Sl~~~rL~~la~~g~~~~~~~A~~ll~l~~~~~~~L~tiliGn~l~~~~~~~~~~~----~~~-- 98 (483)
+++||||||+|+|++|+++.+|+.++++|++ +|+++++++++|+++|+|+|+||+++|.+++.+... +++
T Consensus 2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~----~a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~ 77 (413)
T PRK11573 2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNR----SAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA 77 (413)
T ss_pred eehhhHHHHHHHHHHHcCHHHHHHHHHcCCh----hHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5789999999999999999999999999985 578899999999999999999999998766544322 222
Q ss_pred -hHHHHHHHHHHHHHHHhhcchHHHHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh---hCCCc----ccccCHH
Q 011545 99 -PWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLM---LGKGH----AVLLRRA 170 (483)
Q Consensus 99 -~~~a~li~t~lilvfGEiiPK~la~~~p~~ia~~~a~~l~~l~~l~~Plv~~l~~i~~~l---lg~~~----~~~~s~e 170 (483)
.+.+++++|+++++|||++||++|.+||+++++++++++++++++++|++|+++++.+.+ +|.+. ...+|++
T Consensus 78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e 157 (413)
T PRK11573 78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE 157 (413)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence 233456678899999999999999999999999999999999999999999998877654 55432 2468999
Q ss_pred HHHHHHhhhccccccCCCCCHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCC
Q 011545 171 ELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP 250 (483)
Q Consensus 171 EL~~Lv~~~~~e~~e~G~L~~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~ 250 (483)
||+.+++. +. +.++++|++|++|+++|++++|+|+|+||+++++++.+++++ ++++.+++++|||+|||+++.
T Consensus 158 El~~lv~~----~~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~ 230 (413)
T PRK11573 158 ELRTIVHE----SR--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL 230 (413)
T ss_pred HHHHHHHH----Hh--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence 99999984 22 259999999999999999999999999999999999999998 999999999999999999888
Q ss_pred CcEEEEEEchhhhccccc-cc---cchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEecCC
Q 011545 251 TNIIGLILVKNLLSVDYR-DA---VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN 312 (483)
Q Consensus 251 d~iVGIVs~kDLl~~~~~-~~---~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe~G 312 (483)
|+++|+|+.||++..... .. ..+.++ .+++.+||+++++.++|+.|++++.|+++|+||||
T Consensus 231 D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG 295 (413)
T PRK11573 231 DDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYG 295 (413)
T ss_pred CceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCC
Confidence 999999999999864322 11 223455 68999999999999999999999999999999963
No 3
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-57 Score=457.31 Aligned_cols=290 Identities=26% Similarity=0.431 Sum_probs=256.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhhhhHHhHchHHhhchhHHHHHHHHHHHHHHHHHHHH
Q 011545 14 FFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFL 93 (483)
Q Consensus 14 ~w~~lllil~Ll~lsafFsg~E~Al~Sl~~~rL~~la~~g~~~~~~~A~~ll~l~~~~~~~L~tiliGn~l~~~~~~~~~ 93 (483)
.|..++++++|+++||||||+|||++++||.|++.++++|++ +|+++.+++++|+++++++||||+++|++.+.+.
T Consensus 2 ~~~l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~----~Akrv~kLL~k~drlig~iLIGNNLvNilasala 77 (423)
T COG4536 2 TWILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNR----GAKRVEKLLEKPDRLIGTILIGNNLVNILASALA 77 (423)
T ss_pred cchHHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccch----hhHHHHHHhcCchheeeeeeecccHHHHHHHHHH
Confidence 588889999999999999999999999999999999999996 6889999999999999999999999998765443
Q ss_pred Hh----hhhh---HHHHHHHHHHHHHHHhhcchHHHHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh---hhCCCc
Q 011545 94 DK----LVPP---WAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDL---MLGKGH 163 (483)
Q Consensus 94 ~~----~~~~---~~a~li~t~lilvfGEiiPK~la~~~p~~ia~~~a~~l~~l~~l~~Plv~~l~~i~~~---llg~~~ 163 (483)
.. +++. .+|..+.|+++++|+|++||++|+.||++++...++++.++.++|+|++|+++++++. ++|.+.
T Consensus 78 T~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~ 157 (423)
T COG4536 78 TILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINL 157 (423)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence 32 2222 2467778999999999999999999999999999999999999999999999998875 456542
Q ss_pred ----ccccCHHHHHHHHhhhccccccCCCCCHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcC
Q 011545 164 ----AVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG 239 (483)
Q Consensus 164 ----~~~~s~eEL~~Lv~~~~~e~~e~G~L~~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~ 239 (483)
....+.||||.++.. ++++|...+++++|+-+++++++++|.|||+||.++..++.|++.+ ++++.+.+..
T Consensus 158 ~~~~~~~~s~EElR~~v~~----~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~ 232 (423)
T COG4536 158 DQAVSQLSSKEELRTAVNE----SGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSP 232 (423)
T ss_pred ccccccccCHHHHHHHHHH----hhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCC
Confidence 456789999999984 4556777788999999999999999999999999999999999998 9999999999
Q ss_pred CcccccccCCCCcEEEEEEchhhhccccccc-cchhhhh--ccCCcEecCCCCHHHHHHHhHhcCCcEEEEEecCC
Q 011545 240 HSRVPVYSGNPTNIIGLILVKNLLSVDYRDA-VPLRKMI--IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLN 312 (483)
Q Consensus 240 ~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~-~~V~dIM--~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe~G 312 (483)
|+|+|||.++.|+++|++|.||++++..+.+ ..-.+++ ..+++|||+.+++.+.|..|++++.|++.||||||
T Consensus 233 HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG 308 (423)
T COG4536 233 HTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYG 308 (423)
T ss_pred CCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccC
Confidence 9999999999999999999999999876653 2223332 47899999999999999999999999999999973
No 4
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=100.00 E-value=3.4e-53 Score=448.30 Aligned_cols=328 Identities=30% Similarity=0.502 Sum_probs=277.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhhhhHHhHchHHhhchhHHHHHHHHHHHHHHHHHHHH
Q 011545 14 FFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFL 93 (483)
Q Consensus 14 ~w~~lllil~Ll~lsafFsg~E~Al~Sl~~~rL~~la~~g~~~~~~~A~~ll~l~~~~~~~L~tiliGn~l~~~~~~~~~ 93 (483)
.+..++++++|+++|||||++|+|+++++|.|+++++++|++ +|..++++.++++.+++++++|+++++...+.+.
T Consensus 3 ~~~~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~~----~a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~~ 78 (429)
T COG1253 3 LILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNK----RAKAALKLIERLNRYLSTVQLGITLVSLLLGAVG 78 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccCH----hHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Confidence 455667788899999999999999999999999999999875 5888999999999999999999999887655443
Q ss_pred Hhhh----hhHH---------HHHHHHHHHHHHHhhcchHHHHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-
Q 011545 94 DKLV----PPWA---------AVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLML- 159 (483)
Q Consensus 94 ~~~~----~~~~---------a~li~t~lilvfGEiiPK~la~~~p~~ia~~~a~~l~~l~~l~~Plv~~l~~i~~~ll- 159 (483)
...+ ..|. .+++.|+++++|||++||++|++||++++++.++++++++++++|++|++++++++++
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~ 158 (429)
T COG1253 79 EPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILR 158 (429)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 1111 1356678999999999999999999999999999999999999999999999988764
Q ss_pred --CCC----cccccCHHHHHHHHhhhccccccCCCCCHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHH
Q 011545 160 --GKG----HAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLN 233 (483)
Q Consensus 160 --g~~----~~~~~s~eEL~~Lv~~~~~e~~e~G~L~~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~ 233 (483)
|.. +....+.++++ +++ ++.+.|.++++|++|++++|+|++++|+++||||+++++++.+.+++ ++.+
T Consensus 159 l~~~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~ 232 (429)
T COG1253 159 LFGVEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIE 232 (429)
T ss_pred HcCCCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHH
Confidence 332 22345677777 776 57789999999999999999999999999999999999999999998 9999
Q ss_pred HHHHcCCcccccccCCCCcEEEEEEchhhhccccccc--cchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEecC
Q 011545 234 AIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL 311 (483)
Q Consensus 234 ~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~--~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe~ 311 (483)
.+.+++|||+|||+++.|+++|++|.||++.....++ ...... .+++++||+++++.++|+.|++++.|+++|+|||
T Consensus 233 ~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~-~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy 311 (429)
T COG1253 233 LILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVL-VRPPLFVPETLSLSDLLEEFREERTHMAIVVDEY 311 (429)
T ss_pred HHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhc-ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC
Confidence 9999999999999988899999999999998765543 222222 4599999999999999999999999999999996
Q ss_pred CccccccccccCCCCCCCCCCCCccccccccccccccccccccccccccccCCCCCCCccccCCCCCCcccccCCCCCCC
Q 011545 312 NEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENGPFP 391 (483)
Q Consensus 312 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (483)
T Consensus 312 -------------------------------------------------------------------------------- 311 (429)
T COG1253 312 -------------------------------------------------------------------------------- 311 (429)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCceEEEEeHHHHHHHHHhchhhcchhh--hhhHHHHhhhccccc
Q 011545 392 DFPSNDEAVGVITMEDVIEELLQEEILDETDE--YVNIHNRIKVNMHAS 438 (483)
Q Consensus 392 ~~~~~~~~~Giit~~dv~e~l~~~ei~de~d~--~~~~~~~~~~~~~~~ 438 (483)
|.+.|+||+|||+|++. +||.||+|. -.+++.+....|...
T Consensus 312 -----G~~~GlVTleDIiEeIv-Gei~de~d~~~~~~~~~~~~~~~~v~ 354 (429)
T COG1253 312 -----GGVEGLVTLEDIIEEIV-GEIPDEHDEDEEEDIIQRDDDGWLVD 354 (429)
T ss_pred -----CCeEEEeEHHHHHHHHh-CCCcCcccccccccceEecCCcEEEe
Confidence 57899999999999998 699999986 334444433334333
No 5
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=100.00 E-value=3e-35 Score=314.78 Aligned_cols=426 Identities=42% Similarity=0.578 Sum_probs=341.5
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhhh-hHHhHchHHhhchhHHHHHHHHHHH
Q 011545 6 DVACCGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRI-HAAKIFPVVKNQHLLLCTLLIGNSL 84 (483)
Q Consensus 6 ~~~~~~~~~w~~lllil~Ll~lsafFsg~E~Al~Sl~~~rL~~la~~g~~~~~~-~A~~ll~l~~~~~~~L~tiliGn~l 84 (483)
..++|++++|+..-++.+|++++++|||.+.++++++...++.+.+.|...+++ .++++....++.+++|+|+++||.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~~ 83 (498)
T KOG2118|consen 4 AIPKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNSI 83 (498)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhhh
Confidence 345777777776666666999999999999999999999999999999887765 6888889999999999999999999
Q ss_pred HHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHhhcchHHHHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhCCCc
Q 011545 85 AMEA-LPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGH 163 (483)
Q Consensus 85 ~~~~-~~~~~~~~~~~~~a~li~t~lilvfGEiiPK~la~~~p~~ia~~~a~~l~~l~~l~~Plv~~l~~i~~~llg~~~ 163 (483)
++.+ +++++...+..|.++.+++..+++||||+||++|.+|+..++..+.+++++++++++|+.|+++++ ++.+|...
T Consensus 84 ~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~~ 162 (498)
T KOG2118|consen 84 ATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLNL 162 (498)
T ss_pred ccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhcccc
Confidence 9998 888877777788889999999999999999999999999999999999999999999999999999 88888887
Q ss_pred ccccCHHHHHHHHhhhccccccCCCCCHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCccc
Q 011545 164 AVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRV 243 (483)
Q Consensus 164 ~~~~s~eEL~~Lv~~~~~e~~e~G~L~~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srl 243 (483)
+..+.+.++..++..|++++.+ |.+..+|..++.+++++.++.++++|+|..+++.++.+..+.++.+..+.++||||+
T Consensus 163 ~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sri 241 (498)
T KOG2118|consen 163 GEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRI 241 (498)
T ss_pred ccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCccee
Confidence 7778889999999999888765 999999999999999999999999999999999999999998778888889999999
Q ss_pred ccccCCCCcEEEEEEchhhhccc----cccccchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEecCCccccccc
Q 011545 244 PVYSGNPTNIIGLILVKNLLSVD----YRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGEL 319 (483)
Q Consensus 244 PVvd~d~d~iVGIVs~kDLl~~~----~~~~~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe~G~~~~~~~ 319 (483)
||++.+..+.+|.+-...+++.. .....++.+.|.++.+.+++++++.+.++.|++.+.|++.|...++...--..
T Consensus 242 pv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~~~~~~l 321 (498)
T KOG2118|consen 242 PVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVDIFVLTL 321 (498)
T ss_pred eeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEecCCcceeeEec
Confidence 99998777788887777766665 33456888888999999999999999999999999999999876443211111
Q ss_pred cccC----CCCCCCCCCCCcccccccccccccccccccccccc--ccccCCCCCCCccccCCCCCCcccccCCCCCCCCC
Q 011545 320 FKDN----CKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDA--QQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDF 393 (483)
Q Consensus 320 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (483)
.+.+ ...+..+++++... .|..++.....+++ .+.........-.++++..++.++.+.+..++++-
T Consensus 322 ~~~~~~~~ev~de~d~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (498)
T KOG2118|consen 322 EDLEEVVKEVEDEEDKEEIKFE-------TGIFTLRGIGDLDAGAVTDIDQLGERSPIKERSPRSSESLLDSRKSAFEDL 394 (498)
T ss_pred cchhhhcceeccccccccchhc-------ccchhhcccccccccccchhhhhcccccccccCCCCCcccccccccccccc
Confidence 1100 01111111111111 11111111111111 11111111334477888888888888888888877
Q ss_pred CCC-CceEEEEeHHHHHHHHHhchhhcchhhhhhHHHHhhhccccccc
Q 011545 394 PSN-DEAVGVITMEDVIEELLQEEILDETDEYVNIHNRIKVNMHASQE 440 (483)
Q Consensus 394 ~~~-~~~~Giit~~dv~e~l~~~ei~de~d~~~~~~~~~~~~~~~~~~ 440 (483)
... ....|+.|++|+++...+++|.++.+.+...+++.++..+++.-
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~ 442 (498)
T KOG2118|consen 395 AELGEIGHSVLTLESVIEPDESERILSDLQLVKITRQQYRNALLASLM 442 (498)
T ss_pred ccccccCccceehhhhhccccchhhhccccceechhhhhhhHhhhhhh
Confidence 665 44578999999999999999999999999999988888776643
No 6
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.95 E-value=5.5e-28 Score=244.10 Aligned_cols=147 Identities=24% Similarity=0.469 Sum_probs=129.0
Q ss_pred HhhhCCCcccccCHHHHHHHHhhhccccccCCCCCHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHH
Q 011545 156 DLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAI 235 (483)
Q Consensus 156 ~~llg~~~~~~~s~eEL~~Lv~~~~~e~~e~G~L~~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m 235 (483)
..++|.+. .|++||+.|++ ++.++|.++++|+++++++|+|.+++|+++|+||.++++++.++++. ++++.+
T Consensus 24 ~~~~~~~~---~t~eEl~~l~~----~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i 95 (292)
T PRK15094 24 SQLFHGEP---KNRDELLALIR----DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVI 95 (292)
T ss_pred HHHcCCCC---CCHHHHHHHHH----hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHH
Confidence 34455442 58999999998 46678999999999999999999999999999999999999999999 999999
Q ss_pred HHcCCcccccccCCCCcEEEEEEchhhhccccc--cccchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEecC
Q 011545 236 MTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL 311 (483)
Q Consensus 236 ~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~--~~~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe~ 311 (483)
.+++|+|+|||+++.++++|+|+.+|++..... ....+.++| +++++|++++++.++++.|++++.|++||+|+|
T Consensus 96 ~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l~-r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~ 172 (292)
T PRK15094 96 IESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL-RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEF 172 (292)
T ss_pred HhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHHc-CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCC
Confidence 999999999998766899999999999864322 223578874 677899999999999999999999999999994
No 7
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=99.95 E-value=8.3e-27 Score=218.35 Aligned_cols=168 Identities=29% Similarity=0.486 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhhhhHHhHchHHhhchhHHHHHHHHHHHHHHHHHHHHHhh-
Q 011545 18 VLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMEALPIFLDKL- 96 (483)
Q Consensus 18 lllil~Ll~lsafFsg~E~Al~Sl~~~rL~~la~~g~~~~~~~A~~ll~l~~~~~~~L~tiliGn~l~~~~~~~~~~~~- 96 (483)
+++++++++++||||++|+|++++++.+++.++++|++ +++++.++++||+++++|+++||++++.+.+.+...+
T Consensus 3 l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~~----~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~~ 78 (183)
T PF01595_consen 3 LLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGDK----RARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVLA 78 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999999999999999999999884 5788999999999999999999999987766443322
Q ss_pred ---h----hhHHHHHHHHHHHHHHHhhcchHHHHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh---CCC--cc
Q 011545 97 ---V----PPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLML---GKG--HA 164 (483)
Q Consensus 97 ---~----~~~~a~li~t~lilvfGEiiPK~la~~~p~~ia~~~a~~l~~l~~l~~Plv~~l~~i~~~ll---g~~--~~ 164 (483)
+ +.+.++++.++++++|||++||.+|.+||++++.+.++++++++++++|+++++.++.+++. |.+ +.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~~ 158 (183)
T PF01595_consen 79 SNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEED 158 (183)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 2 23345566678899999999999999999999999999999999999999999999887654 433 24
Q ss_pred cccCHHHHHHHHhhhccccccCCCCCHHH
Q 011545 165 VLLRRAELKTFVNFHGNEAGKGGDLTHDE 193 (483)
Q Consensus 165 ~~~s~eEL~~Lv~~~~~e~~e~G~L~~eE 193 (483)
..+++|||+.+++ +++++|.++++|
T Consensus 159 ~~~s~eel~~lv~----~~~e~G~i~~~E 183 (183)
T PF01595_consen 159 PAVSEEELRSLVE----EGEEEGVIEEEE 183 (183)
T ss_pred CCCCHHHHHHHHH----hHHHCCCCCCCC
Confidence 6789999999998 567889999876
No 8
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.1e-27 Score=226.50 Aligned_cols=180 Identities=26% Similarity=0.488 Sum_probs=160.1
Q ss_pred HHHHHHhhhCCCcccccCHHHHHHHHhhhccccccCCCCCHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHH
Q 011545 151 ISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLD 230 (483)
Q Consensus 151 l~~i~~~llg~~~~~~~s~eEL~~Lv~~~~~e~~e~G~L~~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~e 230 (483)
+..++..+|..+ +-+++||..+++ .+++.+.|+++-+.|+++++++.+.+|+|||+||++++++..+.++. +
T Consensus 19 fe~L~~~~f~gE---pknr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~ 90 (293)
T COG4535 19 FERLLSQLFHGE---PKNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-E 90 (293)
T ss_pred HHHHHHHHhcCC---CcCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-H
Confidence 344444445433 246899999997 46678899999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccc--ccchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEE
Q 011545 231 TLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVY 308 (483)
Q Consensus 231 al~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~--~~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVV 308 (483)
.+..+.+..||||||+.++.+++.||++.|||++....+ ...++++ .||..+||++..+..+|+.|+..+.|||+||
T Consensus 91 ~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIVi 169 (293)
T COG4535 91 CLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVI 169 (293)
T ss_pred HHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEE
Confidence 999999999999999998889999999999999975443 4678886 8999999999999999999999999999999
Q ss_pred ecCCccccccccccCCCCCCCCCCCCccccccccccccccccccccccccccccCCCCCCCccccCCCCCCcccccCCCC
Q 011545 309 KDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENG 388 (483)
Q Consensus 309 De~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (483)
|||
T Consensus 170 DEf----------------------------------------------------------------------------- 172 (293)
T COG4535 170 DEF----------------------------------------------------------------------------- 172 (293)
T ss_pred ecc-----------------------------------------------------------------------------
Confidence 996
Q ss_pred CCCCCCCCCceEEEEeHHHHHHHHHhchhhcchhhhh
Q 011545 389 PFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEYV 425 (483)
Q Consensus 389 ~~~~~~~~~~~~Giit~~dv~e~l~~~ei~de~d~~~ 425 (483)
|.+-|+||.|||+|+|. ++|.||+|+-.
T Consensus 173 --------GgVsGLVTIEDiLEqIV-GdIEDE~Deee 200 (293)
T COG4535 173 --------GGVSGLVTIEDILEQIV-GDIEDEYDEEE 200 (293)
T ss_pred --------CCeeeeEEHHHHHHHHh-cccccccchhh
Confidence 56899999999999998 89999999764
No 9
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.71 E-value=9.7e-17 Score=171.42 Aligned_cols=135 Identities=14% Similarity=0.113 Sum_probs=114.8
Q ss_pred ccCHHHHHHHHhhhccccccC------CCCCHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHH--
Q 011545 166 LLRRAELKTFVNFHGNEAGKG------GDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMT-- 237 (483)
Q Consensus 166 ~~s~eEL~~Lv~~~~~e~~e~------G~L~~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~-- 237 (483)
.++.+|+..+++. ..++ +.++++|+++++++++|++.+|+++|++ +++++++++|+. ++++.|++
T Consensus 89 ~l~~dd~~~ll~~----l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~ 161 (449)
T TIGR00400 89 EMNLDDVIDLLEE----VPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA 161 (449)
T ss_pred cCChhHHHHHHHh----CCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence 3567888888873 3333 4799999999999999999999999984 889999999999 99999986
Q ss_pred ---cCCcccccccCCCCcEEEEEEchhhhccccccccchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 238 ---MGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 238 ---~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
++...+||+|++ ++++|+|+.+|++...+ +.+++++|.++++++++++++.++++.|++++.+.+||||+
T Consensus 162 ~~~~~~~~v~Vvd~~-~~l~GvV~l~dLl~a~~--~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~ 234 (449)
T TIGR00400 162 KTKEDIYTLYVTNES-KHLKGVLSIRDLILAKP--EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDN 234 (449)
T ss_pred CCccceeEEEEECCC-CeEEEEEEHHHHhcCCC--CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcC
Confidence 234456677765 89999999999987543 34799998888889999999999999999999999999998
No 10
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.71 E-value=8.9e-16 Score=151.33 Aligned_cols=137 Identities=14% Similarity=0.253 Sum_probs=114.5
Q ss_pred ccCHHHHHHHHhhhccccccCCCCCHHHHHHHHHHh-------cCcccccccccccCccEEEEeCCCChHHHHHHHHHHc
Q 011545 166 LLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGAL-------ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTM 238 (483)
Q Consensus 166 ~~s~eEL~~Lv~~~~~e~~e~G~L~~eE~~~I~~vl-------~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~ 238 (483)
.++.+++...++. -.|--+|+.++.+.+-+-. .+.+.++.|||++ +|++++.+++++ ++.+++.++
T Consensus 202 gfs~~Dld~aL~~----~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H 274 (382)
T COG3448 202 GFSSEDLDAALQR----LGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH 274 (382)
T ss_pred CCCHHHHHHHHHh----cCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence 5778898887763 2344567777655443332 3578899999995 999999999999 999999999
Q ss_pred CCcccccccCCCCcEEEEEEchhhhccccc---------cccchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEe
Q 011545 239 GHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYK 309 (483)
Q Consensus 239 ~~srlPVvd~d~d~iVGIVs~kDLl~~~~~---------~~~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD 309 (483)
++..+||+|++ .+++|+|+.+|+++.... ...+++.+|+.++.+|.++++..+++..|.+.+.|.+||+|
T Consensus 275 ~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld 353 (382)
T COG3448 275 RIKALPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD 353 (382)
T ss_pred Ccccccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc
Confidence 99999999986 799999999999873211 24579999999999999999999999999999999999999
Q ss_pred c
Q 011545 310 D 310 (483)
Q Consensus 310 e 310 (483)
+
T Consensus 354 ~ 354 (382)
T COG3448 354 A 354 (382)
T ss_pred C
Confidence 8
No 11
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.67 E-value=2.2e-16 Score=153.11 Aligned_cols=109 Identities=17% Similarity=0.320 Sum_probs=100.4
Q ss_pred HHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccc--ccchh
Q 011545 197 IAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLR 274 (483)
Q Consensus 197 I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~--~~~V~ 274 (483)
+..+..+++.+|+++|++ +++++.+|+|+. ++..++.++++...||+|+ |+++|+++..|+..+..++ ...|+
T Consensus 163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~ 237 (294)
T COG2524 163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVS 237 (294)
T ss_pred EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHH
Confidence 456667899999999995 889999999999 9999999999999999986 5999999999999887664 46899
Q ss_pred hhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 275 KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 275 dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
++|.+++++|.+++.+.||++.|..+++.+++|+|.
T Consensus 238 ~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds 273 (294)
T COG2524 238 DYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS 273 (294)
T ss_pred HHhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc
Confidence 999999999999999999999999999999999997
No 12
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.64 E-value=2.1e-15 Score=161.21 Aligned_cols=133 Identities=14% Similarity=0.242 Sum_probs=113.7
Q ss_pred cccCHHHHHHHHhhhccccccCCCCCH-----HHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcC
Q 011545 165 VLLRRAELKTFVNFHGNEAGKGGDLTH-----DETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG 239 (483)
Q Consensus 165 ~~~s~eEL~~Lv~~~~~e~~e~G~L~~-----eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~ 239 (483)
..+|++|+..++.. ....|.|.+ +|++++++++++++. |.+ +++++++++|+. ++++.|.+++
T Consensus 43 dtvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~-----~~~--~~vtl~~~~tv~-eal~~m~~~~ 110 (450)
T TIGR01302 43 DTVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAENG-----IIS--DPVTISPETTVA-DVLELMERKG 110 (450)
T ss_pred CccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccCc-----eec--CceEeCCCCCHH-HHHHHHHHcC
Confidence 46799999988874 334688884 899999999977664 553 678899999999 9999999999
Q ss_pred CcccccccCCC--CcEEEEEEchhhhccccccccchhhhhc-cCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 240 HSRVPVYSGNP--TNIIGLILVKNLLSVDYRDAVPLRKMII-RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 240 ~srlPVvd~d~--d~iVGIVs~kDLl~~~~~~~~~V~dIM~-r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
++++||++++. ++++|+|+.+|++.... ...++.++|. .+++++++++++.++++.|++++.+.+||+|+
T Consensus 111 ~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~-~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe 183 (450)
T TIGR01302 111 ISGIPVVEDGDMTGKLVGIITKRDIRFVKD-KGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK 183 (450)
T ss_pred CCEEEEEeCCCCCCeEEEEEEHHHHhhhhc-CCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC
Confidence 99999998753 68999999999976432 3468999987 48999999999999999999999999999998
No 13
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.62 E-value=2.6e-15 Score=151.13 Aligned_cols=114 Identities=21% Similarity=0.298 Sum_probs=102.5
Q ss_pred HHHHHHHHhc-----CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccc
Q 011545 193 ETTIIAGALE-----LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY 267 (483)
Q Consensus 193 E~~~I~~vl~-----l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~ 267 (483)
-+.||.+++. -+=++|.|||+|..+..++..+++++ +..++..+.||+||||+|.. .+++|+|+.||+....+
T Consensus 170 VAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~~ 247 (432)
T COG4109 170 VATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKKP 247 (432)
T ss_pred HHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCCC
Confidence 3566666654 34478999999999999999999999 99999999999999999976 89999999999987655
Q ss_pred ccccchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 268 RDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 268 ~~~~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
. +++..+|++.+.+|.+.+++..+.+.|...++.++||+|+
T Consensus 248 ~--t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~ 288 (432)
T COG4109 248 S--TTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS 288 (432)
T ss_pred C--ccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcC
Confidence 4 5899999999999999999999999999999999999998
No 14
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.55 E-value=5.5e-14 Score=149.16 Aligned_cols=117 Identities=20% Similarity=0.236 Sum_probs=106.3
Q ss_pred CCCHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcC-----CcccccccCCCCcEEEEEEchhh
Q 011545 188 DLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG-----HSRVPVYSGNPTNIIGLILVKNL 262 (483)
Q Consensus 188 ~L~~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~-----~srlPVvd~d~d~iVGIVs~kDL 262 (483)
.+++++++.++..+.+++.+++.+|+ +++++++.+.|+. ++++.+++.+ ...+.|+|.+ ++++|+|+.+++
T Consensus 114 ~l~~~~r~~v~~~l~y~e~taG~~Mt--~e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~L 189 (451)
T COG2239 114 LLDPEERARVRQLLSYPEDTAGRIMT--TEFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDL 189 (451)
T ss_pred hCCHHHHHHHHHhcCCChhhhhccce--eeeEEeccCcCHH-HHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHH
Confidence 37899999999999999999999999 5999999999999 9999999654 4566788876 789999999999
Q ss_pred hccccccccchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 263 LSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 263 l~~~~~~~~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
+...++ .+++++|.+.+++|+++++.+++.+.|++++.-.+||||+
T Consensus 190 l~a~~~--~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~ 235 (451)
T COG2239 190 LTAEPD--ELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE 235 (451)
T ss_pred hcCCcH--hHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECC
Confidence 976654 4899999999999999999999999999999999999998
No 15
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=1.8e-13 Score=117.10 Aligned_cols=92 Identities=20% Similarity=0.374 Sum_probs=81.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccc--ccchhhhhccCCcEecCCCCHHHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDIL 294 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~--~~~V~dIM~r~v~~V~~~~~l~daL 294 (483)
++.+++.+.++. ++++.|.+++++++||++++ ++++|+|+.+|+.+...+. ..++.++|..++.++++++++.+++
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al 79 (111)
T cd04603 2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLL 79 (111)
T ss_pred ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHH
Confidence 457889999999 99999999999999999875 8999999999998743322 2468999988899999999999999
Q ss_pred HHhHhcCCcEEEEEec
Q 011545 295 NEFQKGHSHIAVVYKD 310 (483)
Q Consensus 295 ~~m~~~~~~~apVVDe 310 (483)
+.|.+++.+.+||+|+
T Consensus 80 ~~m~~~~~~~lpVvd~ 95 (111)
T cd04603 80 RIFRETEPPVVAVVDK 95 (111)
T ss_pred HHHHHcCCCeEEEEcC
Confidence 9999999999999987
No 16
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.50 E-value=2.8e-13 Score=146.19 Aligned_cols=132 Identities=17% Similarity=0.260 Sum_probs=111.8
Q ss_pred cccCHHHHHHHHhhhccccccCCCCC-----HHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcC
Q 011545 165 VLLRRAELKTFVNFHGNEAGKGGDLT-----HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG 239 (483)
Q Consensus 165 ~~~s~eEL~~Lv~~~~~e~~e~G~L~-----~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~ 239 (483)
..+|++||...+.. ...-|.|. ++++++++++..+ +++|. .+++++++++++. ++++.|.+++
T Consensus 50 ~~vT~~ela~ava~----~GglG~i~~~~~~e~~~~~I~~vk~~-----~dim~--~~~v~i~~~~tv~-ea~~~m~~~~ 117 (486)
T PRK05567 50 DTVTEARMAIAMAR----EGGIGVIHKNMSIEEQAEEVRKVKRS-----ESGVV--TDPVTVTPDTTLA-EALALMARYG 117 (486)
T ss_pred CCcCHHHHHHHHHh----CCCCCEecCCCCHHHHHHHHHHhhhh-----hhccc--CCCeEeCCCCCHH-HHHHHHHHhC
Confidence 35789999988863 34456676 5778899988864 56776 4778899999999 9999999999
Q ss_pred CcccccccCCCCcEEEEEEchhhhccccccccchhhhhc-cCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 240 HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMII-RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 240 ~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~V~dIM~-r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
++++||++++ ++++|+|+.+|+.... ....++.++|. ++++++++++++.++++.|.+++.+.+||+|+
T Consensus 118 ~~~lpVvd~~-g~lvGiVt~~DL~~~~-~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe 187 (486)
T PRK05567 118 ISGVPVVDEN-GKLVGIITNRDVRFET-DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD 187 (486)
T ss_pred CCEEEEEccC-CEEEEEEEHHHhhhcc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence 9999999865 8999999999997543 23457999987 78899999999999999999999999999998
No 17
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.50 E-value=1e-13 Score=141.95 Aligned_cols=105 Identities=19% Similarity=0.123 Sum_probs=91.7
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc----cccchhhhhcc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIR 279 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~----~~~~V~dIM~r 279 (483)
...+|+|+|++.+++.++++++|+. ++++.|.++++..+||++++ ++++|+|+.+|+.+.... ...++.++|.+
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~ 277 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP 277 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence 6678999999544788999999999 99999999888888888765 899999999998765332 13579999999
Q ss_pred CCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 280 ~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
++.++.+++++.++++.|.+++.+.+||+|+
T Consensus 278 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~ 308 (326)
T PRK10892 278 GGIRVRPGILAVDALNLMQSRHITSVLVADG 308 (326)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCcEEEEeeC
Confidence 9999999999999999999999999999986
No 18
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.47 E-value=4.3e-13 Score=115.12 Aligned_cols=92 Identities=15% Similarity=0.198 Sum_probs=81.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc-----cccchhhhhccCCcEecCCCCHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY 291 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~-----~~~~V~dIM~r~v~~V~~~~~l~ 291 (483)
++.++++++++. ++++.|.+.++..+||++++ ++++|+|+.+|+++.... ...++.++|.+++.++++++++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04619 2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLH 79 (114)
T ss_pred ceEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHH
Confidence 456789999999 99999999999999999876 899999999999864321 23578999988999999999999
Q ss_pred HHHHHhHhcCCcEEEEEec
Q 011545 292 DILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 292 daL~~m~~~~~~~apVVDe 310 (483)
++++.|.+++.+.+||+|+
T Consensus 80 ~a~~~m~~~~~~~lpVvd~ 98 (114)
T cd04619 80 DVWQVMKQRGLKNIPVVDE 98 (114)
T ss_pred HHHHHHHHcCCCeEEEECC
Confidence 9999999999999999997
No 19
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=4.5e-13 Score=115.87 Aligned_cols=92 Identities=17% Similarity=0.233 Sum_probs=76.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccc-----cchhh------hhccCCcEec
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA-----VPLRK------MIIRRIPRVS 285 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~-----~~V~d------IM~r~v~~V~ 285 (483)
++.++++++++. ++++.|.+++++++||++++ ++++|+++.+|++.....+. .++.+ +|..++.+++
T Consensus 2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (120)
T cd04641 2 NIATARPDTPLI-DVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS 79 (120)
T ss_pred CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence 567899999999 99999999999999999875 89999999999986432211 12332 2345578999
Q ss_pred CCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 286 EDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 286 ~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
+++++.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~l~~~~~~m~~~~~~~l~Vvd~ 104 (120)
T cd04641 80 PDDCLRTIFDLIVKARVHRLVVVDE 104 (120)
T ss_pred CCCcHHHHHHHHHhcCccEEEEECC
Confidence 9999999999999999999999987
No 20
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=4.8e-13 Score=113.24 Aligned_cols=92 Identities=12% Similarity=0.260 Sum_probs=81.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccccchhhhhccCCcEecCCCCHHHHHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~l~daL~~ 296 (483)
++.++++++++. ++++.|.+++++++||++++ ++++|+++.+|+++.......++.++|.+++.++++++++.++++.
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 80 (110)
T cd04605 3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARK 80 (110)
T ss_pred CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHH
Confidence 567889999998 99999999999999999875 8999999999998654433346889988899999999999999999
Q ss_pred hHhcCCcEEEEEec
Q 011545 297 FQKGHSHIAVVYKD 310 (483)
Q Consensus 297 m~~~~~~~apVVDe 310 (483)
|.+++.+.+||+|+
T Consensus 81 ~~~~~~~~~~Vv~~ 94 (110)
T cd04605 81 MERHNISALPVVDA 94 (110)
T ss_pred HHHhCCCEEeEECC
Confidence 99999999999987
No 21
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=6.3e-13 Score=112.45 Aligned_cols=92 Identities=12% Similarity=0.202 Sum_probs=80.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccc-----ccchhhhhccCCcEecCCCCHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLRKMIIRRIPRVSEDMPLY 291 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~-----~~~V~dIM~r~v~~V~~~~~l~ 291 (483)
++.+++++.++. ++++.|.+.+++++||++++ ++++|+++.+|+++..... ..++.++|.+++.++++++++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 79 (113)
T cd04623 2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVD 79 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHH
Confidence 456789999999 99999999999999999876 7999999999998653321 3478899888889999999999
Q ss_pred HHHHHhHhcCCcEEEEEec
Q 011545 292 DILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 292 daL~~m~~~~~~~apVVDe 310 (483)
++++.|.+.+.+.+||+|+
T Consensus 80 ~~l~~~~~~~~~~~~Vv~~ 98 (113)
T cd04623 80 EAMALMTERRFRHLPVVDG 98 (113)
T ss_pred HHHHHHHHcCCCEeEEEeC
Confidence 9999999999999999987
No 22
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=7.5e-13 Score=112.18 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=81.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccccchhhhhccCCcEecCCCCHHHHHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~l~daL~~ 296 (483)
++.++++++++. ++.+.|.+++++.+||++++ ++++|+|+.+|++.... ..++.++|..++.++++++++.++++.
T Consensus 3 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~--~~~v~~~~~~~~~~v~~~~~l~~~~~~ 78 (108)
T cd04596 3 DTGYLTTTDTVK-DWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKDP--DTTIEKVMTKNPITVNPKTSVASVAHM 78 (108)
T ss_pred ccEEeCCCCCHH-HHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhcccc--cccHHHHhcCCCeEECCCCCHHHHHHH
Confidence 677899999999 99999999999999999875 89999999999986532 347999988889999999999999999
Q ss_pred hHhcCCcEEEEEec
Q 011545 297 FQKGHSHIAVVYKD 310 (483)
Q Consensus 297 m~~~~~~~apVVDe 310 (483)
|.+++.+.+||+|+
T Consensus 79 ~~~~~~~~~~Vv~~ 92 (108)
T cd04596 79 MIWEGIEMLPVVDD 92 (108)
T ss_pred HHHcCCCeeeEEcC
Confidence 99999999999987
No 23
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.45 E-value=2.7e-13 Score=138.32 Aligned_cols=104 Identities=14% Similarity=0.115 Sum_probs=90.7
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc---cccchhhhhccCC
Q 011545 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRI 281 (483)
Q Consensus 205 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~---~~~~V~dIM~r~v 281 (483)
..+|+++|++..++.++++++++. ++++.|.+++...+||+|++ ++++|+|+.+|+.+.... ...++.++|.+++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence 467999998633388999999999 99999999999999999876 899999999998754322 2357899999999
Q ss_pred cEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 282 ~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
.++.+++++.++++.|.+++...+||+|+
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 302 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDE 302 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence 99999999999999999999999999997
No 24
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=5.7e-13 Score=113.13 Aligned_cols=92 Identities=14% Similarity=0.269 Sum_probs=81.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccc---ccchhhhhccCCcEecCCCCHHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMIIRRIPRVSEDMPLYDI 293 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~---~~~V~dIM~r~v~~V~~~~~l~da 293 (483)
++.+++.++++. ++++.|.+++++++||++++ ++++|+++.+|++...... ..++.++|.+++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHH
Confidence 466789999998 89999999999999999875 8999999999998654322 347889988889999999999999
Q ss_pred HHHhHhcCCcEEEEEec
Q 011545 294 LNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 294 L~~m~~~~~~~apVVDe 310 (483)
++.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~Vv~~ 96 (111)
T cd04626 80 LDIMREKQIGRLPVVDD 96 (111)
T ss_pred HHHHHHcCCCeeeEeEC
Confidence 99999999999999987
No 25
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=7.4e-13 Score=113.31 Aligned_cols=93 Identities=18% Similarity=0.256 Sum_probs=80.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccc-----ccccchhhhhccCCcEecCCCCHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-----RDAVPLRKMIIRRIPRVSEDMPLY 291 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~-----~~~~~V~dIM~r~v~~V~~~~~l~ 291 (483)
++.++++++++. ++++.|.+++++.+||++++.++++|+++.+|+++... ....++.++|.++++++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 80 (114)
T cd04630 2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIK 80 (114)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHH
Confidence 567899999999 99999999999999999763369999999999986421 123578899888899999999999
Q ss_pred HHHHHhHhcCCcEEEEEec
Q 011545 292 DILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 292 daL~~m~~~~~~~apVVDe 310 (483)
++++.|.+++.+.+||+|+
T Consensus 81 ~~~~~~~~~~~~~~~Vvd~ 99 (114)
T cd04630 81 YCARLMERTNIRRAPVVEN 99 (114)
T ss_pred HHHHHHHHcCCCEeeEeeC
Confidence 9999999999999999987
No 26
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=6.8e-13 Score=112.18 Aligned_cols=80 Identities=15% Similarity=0.314 Sum_probs=72.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccccchhhhhccCCcEecCCCCHHHHHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~l~daL~~ 296 (483)
+++++++++++. ++.+.|.+++++.+||++++.++++|+|+.+|+.+... +.++.+++++.++++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-------------~~~v~~~~~l~~a~~~ 67 (98)
T cd04618 2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------------LVSIHPERSLFDAALL 67 (98)
T ss_pred eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-------------eEEeCCCCcHHHHHHH
Confidence 578899999999 99999999999999999864378999999999976421 6789999999999999
Q ss_pred hHhcCCcEEEEEec
Q 011545 297 FQKGHSHIAVVYKD 310 (483)
Q Consensus 297 m~~~~~~~apVVDe 310 (483)
|.+++.+.+||+|+
T Consensus 68 m~~~~~~~lpVvd~ 81 (98)
T cd04618 68 LLKNKIHRLPVIDP 81 (98)
T ss_pred HHHCCCCEeeEEEC
Confidence 99999999999997
No 27
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.44 E-value=4.3e-13 Score=121.96 Aligned_cols=119 Identities=23% Similarity=0.329 Sum_probs=95.5
Q ss_pred cCCCCCHHH---HHHHHHHhcC--cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEc
Q 011545 185 KGGDLTHDE---TTIIAGALEL--TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILV 259 (483)
Q Consensus 185 e~G~L~~eE---~~~I~~vl~l--~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~ 259 (483)
|.|.+++.- +++++...+- ...+++.+|+ .+++.+.+++++. +++++|.++|||.+||+++ |++||-|+.
T Consensus 39 E~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~--spvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE 113 (187)
T COG3620 39 EAGKVDPRLSTVKRILEALEEAEKTRITAKTIMH--SPVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITE 113 (187)
T ss_pred hcCCCCccHHHHHHHHHHHHHhhcceEeHhhhcc--CCeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecH
Confidence 457777643 3334433333 3468899998 5899999999999 9999999999999999987 799999999
Q ss_pred hhhhcccccc-----ccchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 260 KNLLSVDYRD-----AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 260 kDLl~~~~~~-----~~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
+|+.+...++ ...++++|-.++++|++++++..+-+.+..+ ....|+++
T Consensus 114 ~~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e~ 167 (187)
T COG3620 114 NDIVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVVEN 167 (187)
T ss_pred HHHHHHHhccccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEEeC
Confidence 9998875432 4689999999999999999999888887766 45666654
No 28
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=9e-13 Score=113.91 Aligned_cols=92 Identities=16% Similarity=0.343 Sum_probs=81.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccc--------------ccchhhhhccCCc
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------------AVPLRKMIIRRIP 282 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~--------------~~~V~dIM~r~v~ 282 (483)
++.+++++.++. ++.+.|.+.+++++||++++ ++++|+|+.+|++...... ..++.++|.+++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (124)
T cd04600 3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV 80 (124)
T ss_pred CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence 567899999999 99999999999999999875 8999999999997653221 2368899888899
Q ss_pred EecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 283 RVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 283 ~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
++++++++.++++.|.+++.+.+||+|+
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~ 108 (124)
T cd04600 81 TVRPDTPIAELVPLLADGGHHHVPVVDE 108 (124)
T ss_pred eeCCCCcHHHHHHHHHhcCCCceeEEcC
Confidence 9999999999999999999999999997
No 29
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.43 E-value=9.8e-13 Score=111.48 Aligned_cols=92 Identities=41% Similarity=0.638 Sum_probs=79.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccc--cchhhhhccCCcEecCCCCHHHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--VPLRKMIIRRIPRVSEDMPLYDIL 294 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~--~~V~dIM~r~v~~V~~~~~l~daL 294 (483)
++.++++++++. ++.+.|.+.+++.+||++++.++++|+++.+|+++...... .++.++ ++++.++++++++.+++
T Consensus 2 ~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l~~~~ 79 (111)
T cd04590 2 DIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTPLDDLL 79 (111)
T ss_pred ceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCcHHHHH
Confidence 678899999999 99999999999999999864378999999999987653321 356665 57888999999999999
Q ss_pred HHhHhcCCcEEEEEec
Q 011545 295 NEFQKGHSHIAVVYKD 310 (483)
Q Consensus 295 ~~m~~~~~~~apVVDe 310 (483)
+.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~Vv~~ 95 (111)
T cd04590 80 EEMRKERSHMAIVVDE 95 (111)
T ss_pred HHHHhcCCcEEEEEEC
Confidence 9999999999999997
No 30
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.42 E-value=1.2e-12 Score=111.99 Aligned_cols=92 Identities=16% Similarity=0.218 Sum_probs=80.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccc----ccchhhhhccCCcEecCCCCHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD 292 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~----~~~V~dIM~r~v~~V~~~~~l~d 292 (483)
++.++++++++. ++++.|.+.+++++||++++ ++++|+++.+||+....+. ..++.++|.+++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 79 (115)
T cd04593 2 PPPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAH 79 (115)
T ss_pred CCcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHH
Confidence 345788999999 99999999999999999875 8999999999998654321 23488888888999999999999
Q ss_pred HHHHhHhcCCcEEEEEec
Q 011545 293 ILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 293 aL~~m~~~~~~~apVVDe 310 (483)
+++.|.+++.+.+||+|+
T Consensus 80 ~l~~~~~~~~~~~~Vvd~ 97 (115)
T cd04593 80 ALDRMASRGLRQLPVVDR 97 (115)
T ss_pred HHHHHHHcCCceeeEEeC
Confidence 999999999999999988
No 31
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=1.6e-12 Score=113.55 Aligned_cols=92 Identities=17% Similarity=0.219 Sum_probs=77.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccccc-----------------chhhhhcc
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV-----------------PLRKMIIR 279 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~-----------------~V~dIM~r 279 (483)
+++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|+++....... ...+.|.+
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T cd04642 2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR 79 (126)
T ss_pred CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence 567899999999 99999999999999999876 899999999999875432110 01235667
Q ss_pred CCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 280 ~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
++.++++++++.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~ 110 (126)
T cd04642 80 PLITCTPSSTLKEVITKLVANKVHRVWVVDE 110 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHhCCcEEEEECC
Confidence 8899999999999999999999999999997
No 32
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=1.5e-12 Score=110.26 Aligned_cols=92 Identities=24% Similarity=0.386 Sum_probs=80.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc--cccchhhhhccCCcEecCCCCHHHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIPRVSEDMPLYDIL 294 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~--~~~~V~dIM~r~v~~V~~~~~l~daL 294 (483)
++.+++.++++. ++++.|.+.+++++||++++ ++++|+|+.+|+.+.... ...++.++|.+++.++++++++.+++
T Consensus 2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 79 (111)
T cd04639 2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVL 79 (111)
T ss_pred CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHH
Confidence 456789999998 99999998999999999875 899999999999865322 23478999888999999999999999
Q ss_pred HHhHhcCCcEEEEEec
Q 011545 295 NEFQKGHSHIAVVYKD 310 (483)
Q Consensus 295 ~~m~~~~~~~apVVDe 310 (483)
+.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~Vv~~ 95 (111)
T cd04639 80 RLMQQGGAPAVPVVDG 95 (111)
T ss_pred HHHHhcCCceeeEEcC
Confidence 9999999999999987
No 33
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.41 E-value=1.7e-12 Score=115.93 Aligned_cols=92 Identities=16% Similarity=0.229 Sum_probs=80.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccc---------------------------
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------------------------- 269 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~--------------------------- 269 (483)
++.++++++++. ++++.|.+.+++++||++++ ++++|+|+.+|+++.....
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (135)
T cd04621 2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV 79 (135)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence 457789999999 99999999999999999875 8999999999998654211
Q ss_pred ccchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 270 ~~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
..++.++|.+++.+|++++++.++++.|.+++.+.+||+|+
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~ 120 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN 120 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC
Confidence 24689998888899999999999999999999999999987
No 34
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=2.2e-12 Score=111.16 Aligned_cols=92 Identities=20% Similarity=0.325 Sum_probs=80.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc-------------cccchhhhhccCCcE
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-------------DAVPLRKMIIRRIPR 283 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~-------------~~~~V~dIM~r~v~~ 283 (483)
++.++.+++++. ++.+.|.+.+++++||++++ ++++|+++.+|+++.... ...++.++|.+++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (122)
T cd04803 2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLT 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeE
Confidence 456789999999 99999999999999999875 899999999998865321 235788898888999
Q ss_pred ecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 284 VSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 284 V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
+++++++.++++.|.+++.+.+||+|+
T Consensus 80 v~~~~~~~~~~~~~~~~~~~~~~Vv~~ 106 (122)
T cd04803 80 VTPDTPLREAAEIMVENKIGCLPVVDD 106 (122)
T ss_pred eCCCCcHHHHHHHHHHcCCCeEEEEcC
Confidence 999999999999999999999999987
No 35
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=1.6e-12 Score=110.36 Aligned_cols=92 Identities=14% Similarity=0.273 Sum_probs=80.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccc---ccchhhhhccCCcEecCCCCHHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMIIRRIPRVSEDMPLYDI 293 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~---~~~V~dIM~r~v~~V~~~~~l~da 293 (483)
++.+++.+.++. ++.+.|.+.+++++||++++ ++++|+|+.+|+++..... ..++.++|.++++++++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 79 (112)
T cd04624 2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHH
Confidence 356789999998 99999999999999999876 8999999999997653221 357889988899999999999999
Q ss_pred HHHhHhcCCcEEEEEec
Q 011545 294 LNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 294 L~~m~~~~~~~apVVDe 310 (483)
++.|.+++...+||+|+
T Consensus 80 ~~~~~~~~~~~~~Vv~~ 96 (112)
T cd04624 80 AKLMRKNNIRHHLVVDK 96 (112)
T ss_pred HHHHHHcCccEEEEEcC
Confidence 99999999999999987
No 36
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=2e-12 Score=110.25 Aligned_cols=90 Identities=18% Similarity=0.225 Sum_probs=77.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccc---------ccchhhhhccCCcEecCC
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---------AVPLRKMIIRRIPRVSED 287 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~---------~~~V~dIM~r~v~~V~~~ 287 (483)
++++++.++++. ++++.|.+++++++||++++ ++++|+|+.+|+++..... ..++.++|.+++.+++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~ 79 (116)
T cd04643 2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD 79 (116)
T ss_pred CcEEECCCCcHH-HHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCC
Confidence 567899999999 99999999999999999865 7999999999998754321 347889988889999999
Q ss_pred CCHHHHHHHhHhcCCcEEEEEec
Q 011545 288 MPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 288 ~~l~daL~~m~~~~~~~apVVDe 310 (483)
+++.++++.|.+.+ .+||+|+
T Consensus 80 ~~l~~a~~~~~~~~--~~~Vv~~ 100 (116)
T cd04643 80 ADIEEILHLLIDQP--FLPVVDD 100 (116)
T ss_pred CCHHHHHHHHhcCC--ceeEEeC
Confidence 99999999998864 5899987
No 37
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=2.2e-12 Score=111.66 Aligned_cols=93 Identities=15% Similarity=0.272 Sum_probs=80.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccc---------------ccchhhhhccCC
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---------------AVPLRKMIIRRI 281 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~---------------~~~V~dIM~r~v 281 (483)
++.+++++.++. ++++.|.+.+++++||++++.++++|+|+.+|++....+. ..++.++|.+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 457789999999 9999999999999999986447899999999998653321 236888888889
Q ss_pred cEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 282 ~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
+++++++++.++++.|.+.+.+.+||+|+
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~ 109 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVGGLPVVDD 109 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEcC
Confidence 99999999999999999999999999987
No 38
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.39 E-value=1.6e-12 Score=139.65 Aligned_cols=101 Identities=15% Similarity=0.203 Sum_probs=90.3
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccccchhhhhccCCcE
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPR 283 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v~~ 283 (483)
...+++++|++ +++++++++++. ++++.|.+++++.+||+|++ ++++|+|+.+|+..... ..++.++|.+++.+
T Consensus 87 ~~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~~--~~~V~diMt~~~it 160 (479)
T PRK07807 87 AWVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVDR--FTQVRDVMSTDLVT 160 (479)
T ss_pred hhccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCcc--CCCHHHhccCCceE
Confidence 35567899974 788999999999 99999999999999999865 79999999999975432 35799999999999
Q ss_pred ecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 284 VSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 284 V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
+++++++.++++.|.+++.+.+||+|+
T Consensus 161 V~~d~sL~eAl~lM~~~~i~~LPVVD~ 187 (479)
T PRK07807 161 LPAGTDPREAFDLLEAARVKLAPVVDA 187 (479)
T ss_pred ECCCCcHHHHHHHHHhcCCCEEEEEcC
Confidence 999999999999999999999999997
No 39
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.39 E-value=1.9e-12 Score=111.77 Aligned_cols=92 Identities=12% Similarity=0.244 Sum_probs=79.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc----cccchhhhhcc--CCcEecCCCCH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIR--RIPRVSEDMPL 290 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~----~~~~V~dIM~r--~v~~V~~~~~l 290 (483)
++.++++++++. ++++.|.+++...+||++++ ++++|+|+.+|+++.... ...++.++|.+ +++++++++++
T Consensus 2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l 79 (118)
T cd04617 2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESV 79 (118)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcH
Confidence 456889999999 99999999999999999875 789999999998875432 13467888864 68899999999
Q ss_pred HHHHHHhHhcCCcEEEEEec
Q 011545 291 YDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 291 ~daL~~m~~~~~~~apVVDe 310 (483)
.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~~lpVvd~ 99 (118)
T cd04617 80 LEAAKKLIEHQVDSLPVVEK 99 (118)
T ss_pred HHHHHHHHHcCCCEeeEEeC
Confidence 99999999999999999998
No 40
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=1.6e-12 Score=112.82 Aligned_cols=93 Identities=16% Similarity=0.242 Sum_probs=76.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccc--c-----------cchhhhhccCCcE
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--A-----------VPLRKMIIRRIPR 283 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~--~-----------~~V~dIM~r~v~~ 283 (483)
++.++++++++. ++++.|.+++++++||++++.++++|+|+.+|+++..... . ..+.++|.+++.+
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (123)
T cd04627 2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS 80 (123)
T ss_pred CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence 467789999999 9999999999999999986437899999999988643211 0 1122456788889
Q ss_pred ecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 284 VSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 284 V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
+++++++.++++.|.+++.+.+||+|+
T Consensus 81 v~~~~~l~~a~~~m~~~~~~~lpVvd~ 107 (123)
T cd04627 81 INGDQPLIDALHLMHNEGISSVAVVDN 107 (123)
T ss_pred eCCCCCHHHHHHHHHHcCCceEEEECC
Confidence 999999999999999999999999987
No 41
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=2.5e-12 Score=107.74 Aligned_cols=89 Identities=10% Similarity=0.187 Sum_probs=79.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccccchhhhhccCCcEecCCCCHHHHHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~l~daL~~ 296 (483)
++..+++++++. ++++.|.+++++++||+++ ++++|+++.+|+++... ..++.++|..++.++++++++.++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~Giv~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 76 (105)
T cd04599 2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVED--GKLVGIITSRDVRRAHP--NRLVADAMTREVVTISPEASLLEAKRL 76 (105)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEehHHhhcccc--cCCHHHHccCCCEEECCCCCHHHHHHH
Confidence 456789999999 9999999999999999973 79999999999987543 347889988889999999999999999
Q ss_pred hHhcCCcEEEEEec
Q 011545 297 FQKGHSHIAVVYKD 310 (483)
Q Consensus 297 m~~~~~~~apVVDe 310 (483)
|.+++...+||+|+
T Consensus 77 ~~~~~~~~~~Vv~~ 90 (105)
T cd04599 77 MEEKKIERLPVLRE 90 (105)
T ss_pred HHHcCCCEeeEEEC
Confidence 99999999999987
No 42
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=3.2e-12 Score=108.98 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=79.0
Q ss_pred EEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc---cccchhhhhccCCcEecCCCCHHHHH
Q 011545 218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIPRVSEDMPLYDIL 294 (483)
Q Consensus 218 VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~---~~~~V~dIM~r~v~~V~~~~~l~daL 294 (483)
.++++.++++. ++++.|.+.++..+||++++ ++++|+|+.+|+++.... ...++.++|..++.++++++++.+++
T Consensus 4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04607 4 QLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEIL 81 (113)
T ss_pred ceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHH
Confidence 35789999998 99999999999999999875 899999999998754322 13478899877888999999999999
Q ss_pred HHhHhcCCcEEEEEec
Q 011545 295 NEFQKGHSHIAVVYKD 310 (483)
Q Consensus 295 ~~m~~~~~~~apVVDe 310 (483)
+.|.+++.+.+||+|+
T Consensus 82 ~~~~~~~~~~~~Vv~~ 97 (113)
T cd04607 82 ALMRERSIRHLPILDE 97 (113)
T ss_pred HHHHHCCCCEEEEECC
Confidence 9999999999999987
No 43
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=3.7e-12 Score=109.72 Aligned_cols=92 Identities=12% Similarity=0.245 Sum_probs=80.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccc-------------ccccchhhhhccCCcE
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-------------RDAVPLRKMIIRRIPR 283 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~-------------~~~~~V~dIM~r~v~~ 283 (483)
++.+++++.++. ++++.|.+.+++.+||++++ ++++|+++.+|+++... ....++.++|.+++..
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd04635 2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCee
Confidence 567889999999 99999999999999999865 89999999999986410 1234688888888899
Q ss_pred ecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 284 VSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 284 V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
+++++++.++++.|.+++.+.+||+|+
T Consensus 80 v~~~~~l~~~~~~~~~~~~~~~~Vvd~ 106 (122)
T cd04635 80 VTPDDSIATAVELMLEHDIGRLPVVNE 106 (122)
T ss_pred ECCCCCHHHHHHHHHHcCCCeeeEEcC
Confidence 999999999999999999999999987
No 44
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=1.4e-12 Score=111.34 Aligned_cols=92 Identities=13% Similarity=0.195 Sum_probs=77.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHcC-CcccccccCCCCcEEEEEEchhhhcccccc--ccchhhhhcc--CCcEecCCCCHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIR--RIPRVSEDMPLY 291 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~-~srlPVvd~d~d~iVGIVs~kDLl~~~~~~--~~~V~dIM~r--~v~~V~~~~~l~ 291 (483)
++.++++++++. ++++.|.+++ ++++||++++ ++++|+|+.+|++...... ..++.++|.. +++++.+++++.
T Consensus 2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04801 2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLA 79 (114)
T ss_pred CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHH
Confidence 466789999999 9999887765 8999999875 8999999999998764322 3578888753 356899999999
Q ss_pred HHHHHhHhcCCcEEEEEec
Q 011545 292 DILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 292 daL~~m~~~~~~~apVVDe 310 (483)
++++.|++++.+.+||+|+
T Consensus 80 ~a~~~~~~~~~~~l~Vv~~ 98 (114)
T cd04801 80 EVLKLLEEQGLDELAVVED 98 (114)
T ss_pred HHHHHHHHCCCCeeEEEcC
Confidence 9999999999999999987
No 45
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.38 E-value=4.1e-12 Score=107.28 Aligned_cols=91 Identities=19% Similarity=0.278 Sum_probs=79.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccc---cchhhhhccCCcEecCCCCHHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA---VPLRKMIIRRIPRVSEDMPLYDI 293 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~---~~V~dIM~r~v~~V~~~~~l~da 293 (483)
++..+++++++. ++++.|.+.+++++||+++ ++++|+++.+|+.+...... .++.++|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 78 (111)
T cd04612 2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA 78 (111)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHH
Confidence 456789999999 9999999999999999986 89999999999987543321 25778888999999999999999
Q ss_pred HHHhHhcCCcEEEEEec
Q 011545 294 LNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 294 L~~m~~~~~~~apVVDe 310 (483)
++.|.+++.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~V~~~ 95 (111)
T cd04612 79 LKRMAERDIGRLPVVDD 95 (111)
T ss_pred HHHHHhCCCCeeeEEcC
Confidence 99999999999999987
No 46
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.37 E-value=1.9e-12 Score=142.51 Aligned_cols=104 Identities=16% Similarity=0.198 Sum_probs=91.2
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccc---c-cccchhhhhc
Q 011545 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY---R-DAVPLRKMII 278 (483)
Q Consensus 203 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~---~-~~~~V~dIM~ 278 (483)
++..+|+|+|++ ++.++++++++. ++.+.|.+++++.+||+|++ ++++|+|+.+|+.+... . ...++.++|.
T Consensus 444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~ 519 (574)
T PRK01862 444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYAH 519 (574)
T ss_pred HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence 566789999985 567889999999 99999999999999999875 89999999999987421 1 1357899998
Q ss_pred cCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 279 r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
+++.++++++++.++++.|.+++.+.+||+|+
T Consensus 520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~ 551 (574)
T PRK01862 520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVES 551 (574)
T ss_pred CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeC
Confidence 89999999999999999999999999999987
No 47
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=3.3e-12 Score=108.60 Aligned_cols=92 Identities=18% Similarity=0.293 Sum_probs=80.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc------cccchhhhhccCCcEecCCCCH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR------DAVPLRKMIIRRIPRVSEDMPL 290 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~------~~~~V~dIM~r~v~~V~~~~~l 290 (483)
++.+++++.++. ++.+.|.+++++++||++++ ++++|+|+.+|+++.... ...++.++|.+++.++++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l 79 (114)
T cd04629 2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSI 79 (114)
T ss_pred CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcH
Confidence 456789999999 99999999999999999875 799999999999864321 2357889988888999999999
Q ss_pred HHHHHHhHhcCCcEEEEEec
Q 011545 291 YDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 291 ~daL~~m~~~~~~~apVVDe 310 (483)
.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~~~~Vv~~ 99 (114)
T cd04629 80 VDLAQLMLKAKPKRYPVVDD 99 (114)
T ss_pred HHHHHHHHHhCCCccCEEEC
Confidence 99999999999999999987
No 48
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=4.2e-12 Score=111.75 Aligned_cols=92 Identities=21% Similarity=0.349 Sum_probs=79.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccc----c--------------------cc
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----A--------------------VP 272 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~----~--------------------~~ 272 (483)
++.++.+++++. ++++.|.+.+++++||++++ ++++|+++.+|+++..... . .+
T Consensus 2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (132)
T cd04636 2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK 79 (132)
T ss_pred CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence 456789999999 99999999999999999875 8999999999998653221 1 17
Q ss_pred hhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 273 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 273 V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
+.++|.+++.++++++++.++++.|.+.+.+.+||+|+
T Consensus 80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~ 117 (132)
T cd04636 80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD 117 (132)
T ss_pred HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC
Confidence 88888888999999999999999999999999999987
No 49
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.37 E-value=4.8e-12 Score=106.36 Aligned_cols=89 Identities=12% Similarity=0.054 Sum_probs=78.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccccchhhhhccCCcEecCCCCHHHHHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~l~daL~~ 296 (483)
++.+++++.++. ++++.|.+.++..+||++++ ++++|+++.+|+++... .++.++|.+++.++++++++.++++.
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (106)
T cd04582 2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG---GCCGDHAEPFKVTVSVDDDLRIVLSR 76 (106)
T ss_pred CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc---cchhhhcccCCEEECCCCCHHHHHHH
Confidence 456789999998 99999999999999999865 89999999999986532 25788887777889999999999999
Q ss_pred hHhcCCcEEEEEec
Q 011545 297 FQKGHSHIAVVYKD 310 (483)
Q Consensus 297 m~~~~~~~apVVDe 310 (483)
|.+++...+||+|+
T Consensus 77 ~~~~~~~~~~Vv~~ 90 (106)
T cd04582 77 MFAHDMSWLPCVDE 90 (106)
T ss_pred HHHCCCCeeeEECC
Confidence 99999999999987
No 50
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=2.7e-12 Score=112.28 Aligned_cols=92 Identities=17% Similarity=0.325 Sum_probs=75.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccc----------cccccchhhhhccCCcE--e
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD----------YRDAVPLRKMIIRRIPR--V 284 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~----------~~~~~~V~dIM~r~v~~--V 284 (483)
++.+++.++++. ++++.|.++++..+||++++ ++++|+++.+|+.... .....++.++|.++... +
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~ 79 (126)
T cd04640 2 KPIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKAL 79 (126)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccc
Confidence 356789999999 99999998999999999865 8999999999988521 11235688998655433 3
Q ss_pred ----cCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 285 ----SEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 285 ----~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
.+++++.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~ 109 (126)
T cd04640 80 DLEELENASVGDVVETLKASGRQHALVVDR 109 (126)
T ss_pred cHHHhccCcHHHHHHHHHHCCCceEEEEEC
Confidence 37899999999999999999999997
No 51
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.37 E-value=5.1e-12 Score=106.54 Aligned_cols=91 Identities=16% Similarity=0.248 Sum_probs=78.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccccchhhhhccCCcEecC-CCCHHHHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSE-DMPLYDILN 295 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v~~V~~-~~~l~daL~ 295 (483)
++.+++.+.++. ++.+.|.+.+++++||++++ ++++|+++.+|++.... ...++.++|..++.++.+ ++++.++++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 79 (110)
T cd04601 3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-LDKPVSEVMTPENLLTTVEGTSLEEALE 79 (110)
T ss_pred CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-CCCCHHHhcccCceEEecCCCCHHHHHH
Confidence 556789999998 99999999999999999876 89999999999876533 345789998766676666 999999999
Q ss_pred HhHhcCCcEEEEEec
Q 011545 296 EFQKGHSHIAVVYKD 310 (483)
Q Consensus 296 ~m~~~~~~~apVVDe 310 (483)
.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~Vv~~ 94 (110)
T cd04601 80 LLHEHKIEKLPVVDD 94 (110)
T ss_pred HHHHhCCCeeeEEcC
Confidence 999999999999987
No 52
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.37 E-value=4.9e-12 Score=106.47 Aligned_cols=91 Identities=16% Similarity=0.280 Sum_probs=80.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccccchhhhhccCCcEecCCCCHHHHHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~l~daL~~ 296 (483)
++..++++.++. ++++.|.+.++.++||++++ ++++|+|+.+|++.... ...++.++|.+.+.++++++++.++++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~~~~ 79 (109)
T cd04583 3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYK-EAKSLEDIMLEDVFTVQPDASLRDVLGL 79 (109)
T ss_pred CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhh-cCCcHhHhhcCCceEECCCCcHHHHHHH
Confidence 556789999999 99999999999999999875 89999999999986542 2357889988889999999999999999
Q ss_pred hHhcCCcEEEEEec
Q 011545 297 FQKGHSHIAVVYKD 310 (483)
Q Consensus 297 m~~~~~~~apVVDe 310 (483)
|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~vv~~ 93 (109)
T cd04583 80 VLKRGPKYVPVVDE 93 (109)
T ss_pred HHHcCCceeeEECC
Confidence 99999999999987
No 53
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.36 E-value=5.2e-12 Score=106.84 Aligned_cols=91 Identities=19% Similarity=0.324 Sum_probs=80.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccc--ccchhhhhccCCcEecCCCCHHHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDIL 294 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~--~~~V~dIM~r~v~~V~~~~~l~daL 294 (483)
++++++.++++. ++.+.|.+.+++++||+++ ++++|+++.+|+++....+ ..++.++|.+++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHH
Confidence 467789999999 9999999999999999986 7899999999998764332 2478888888889999999999999
Q ss_pred HHhHhcCCcEEEEEec
Q 011545 295 NEFQKGHSHIAVVYKD 310 (483)
Q Consensus 295 ~~m~~~~~~~apVVDe 310 (483)
+.|.+.+.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~V~~~ 94 (110)
T cd04588 79 RLMNKHNVGRLIVTDD 94 (110)
T ss_pred HHHHhcCCCEEEEECC
Confidence 9999999999999987
No 54
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.36 E-value=5.1e-12 Score=106.69 Aligned_cols=91 Identities=16% Similarity=0.242 Sum_probs=80.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc---cccchhhhhccCCcEecCCCCHHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIPRVSEDMPLYDI 293 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~---~~~~V~dIM~r~v~~V~~~~~l~da 293 (483)
++.+++++.++. ++++.|.+.++..+||+++ ++++|+++.+|+++.... ...++.++|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 78 (111)
T cd04611 2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDA 78 (111)
T ss_pred CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHH
Confidence 456789999999 9999999999999999976 799999999999865432 2357889988889999999999999
Q ss_pred HHHhHhcCCcEEEEEec
Q 011545 294 LNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 294 L~~m~~~~~~~apVVDe 310 (483)
++.|.+.+.+.+||+|+
T Consensus 79 l~~~~~~~~~~~~Vv~~ 95 (111)
T cd04611 79 RQLMREHGIRHLVVVDD 95 (111)
T ss_pred HHHHHHcCCeEEEEECC
Confidence 99999999999999987
No 55
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.36 E-value=5.4e-12 Score=106.84 Aligned_cols=92 Identities=16% Similarity=0.292 Sum_probs=81.0
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccc----ccchhhhhccCCcEecCCCCHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD 292 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~----~~~V~dIM~r~v~~V~~~~~l~d 292 (483)
++.++++++++. ++++.|.+.+++++||++++ ++++|+++.+|+.+..... ..++.++|.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 79 (114)
T cd04613 2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLED 79 (114)
T ss_pred CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHH
Confidence 466789999999 99999999999999999876 8999999999998653221 25788998889999999999999
Q ss_pred HHHHhHhcCCcEEEEEec
Q 011545 293 ILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 293 aL~~m~~~~~~~apVVDe 310 (483)
+++.|.+.+.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~~Vv~~ 97 (114)
T cd04613 80 ALKKFEDSDYEQLPVVDD 97 (114)
T ss_pred HHHHHhhCCccEeeEEeC
Confidence 999999999999999975
No 56
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=7.5e-12 Score=105.16 Aligned_cols=89 Identities=17% Similarity=0.322 Sum_probs=79.0
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccccchhhhhccCCcEecCCCCHHHHHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~l~daL~~ 296 (483)
++.+++.+.++. ++++.|.+.+++++||+++ ++++|+++.+|++.... ..++.++|..++.++++++++.++++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (107)
T cd04610 3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKDP--DETVEEIMSKDLVVAVPEMDIMDAARV 77 (107)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccCc--cccHHHhCCCCCeEECCCCCHHHHHHH
Confidence 567889999999 9999999888899999975 79999999999986532 346899988888999999999999999
Q ss_pred hHhcCCcEEEEEec
Q 011545 297 FQKGHSHIAVVYKD 310 (483)
Q Consensus 297 m~~~~~~~apVVDe 310 (483)
|.+++.+.+||+|+
T Consensus 78 ~~~~~~~~~~Vv~~ 91 (107)
T cd04610 78 MFRTGISKLPVVDE 91 (107)
T ss_pred HHHhCCCeEeEECC
Confidence 99999999999987
No 57
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.35 E-value=6.5e-12 Score=106.61 Aligned_cols=91 Identities=18% Similarity=0.263 Sum_probs=79.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc----cccchhhhhccCCcEecCCCCHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSEDMPLYD 292 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~----~~~~V~dIM~r~v~~V~~~~~l~d 292 (483)
+++.++.+.++. ++++.|.+.++..+||+++ ++++|+++.+|++..... ...++.++|.+++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04589 2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFN 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHH
Confidence 346789999999 9999999999999999986 689999999999865322 235788998888999999999999
Q ss_pred HHHHhHhcCCcEEEEEec
Q 011545 293 ILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 293 aL~~m~~~~~~~apVVDe 310 (483)
+++.|.+++.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~~Vv~~ 96 (111)
T cd04589 79 ALLLMTRHRIHRVVVREG 96 (111)
T ss_pred HHHHHHHhCccEEEEeeC
Confidence 999999999999999986
No 58
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=4.8e-12 Score=111.81 Aligned_cols=92 Identities=14% Similarity=0.286 Sum_probs=80.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccc--------------------------ccc
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY--------------------------RDA 270 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~--------------------------~~~ 270 (483)
++.++++++++. ++++.|.+.++.++||++++ ++++|+++.+|+++... ...
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 567889999998 99999999999999999865 89999999999875321 123
Q ss_pred cchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 271 ~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
.++.++|..++.++++++++.++++.|.+.+.+.+||+|+
T Consensus 81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~ 120 (135)
T cd04586 81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRG 120 (135)
T ss_pred CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEecC
Confidence 4688998888899999999999999999999999999985
No 59
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=6.8e-12 Score=106.29 Aligned_cols=91 Identities=18% Similarity=0.340 Sum_probs=80.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc--cccchhhhhccCCcEecCCCCHHHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIPRVSEDMPLYDIL 294 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~--~~~~V~dIM~r~v~~V~~~~~l~daL 294 (483)
++.+++.+.++. ++.+.|.+.+++++||+++ ++++|+|+..|+++.... ...++.++|.+++.++++++++.+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 79 (110)
T cd04595 3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQ 79 (110)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHH
Confidence 567889999998 9999999999999999986 799999999998865422 23578899988999999999999999
Q ss_pred HHhHhcCCcEEEEEec
Q 011545 295 NEFQKGHSHIAVVYKD 310 (483)
Q Consensus 295 ~~m~~~~~~~apVVDe 310 (483)
+.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~V~~~ 95 (110)
T cd04595 80 ELMVEHDIGRVPVVED 95 (110)
T ss_pred HHHHHcCCCeeEEEeC
Confidence 9999999999999985
No 60
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.34 E-value=7.5e-12 Score=106.03 Aligned_cols=91 Identities=13% Similarity=0.193 Sum_probs=79.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccc-c---cccchhhhhccCCcEecCCCCHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-R---DAVPLRKMIIRRIPRVSEDMPLYD 292 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~-~---~~~~V~dIM~r~v~~V~~~~~l~d 292 (483)
++.+++.+.++. ++.+.|.+.+++++||+++ ++++|+++.+|+++... . ...++.++|.++++++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04800 2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFE 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHH
Confidence 567789999999 9999999999999999986 89999999999885321 1 135788998889999999999999
Q ss_pred HHHHhHhcCCcEEEEEec
Q 011545 293 ILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 293 aL~~m~~~~~~~apVVDe 310 (483)
+++.|.+++.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~~Vv~~ 96 (111)
T cd04800 79 ALLLMLERGIHHLPVVDD 96 (111)
T ss_pred HHHHHHHcCCCeeeEeEC
Confidence 999999999999999987
No 61
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.34 E-value=1.7e-12 Score=114.02 Aligned_cols=92 Identities=18% Similarity=0.297 Sum_probs=75.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccc----ccccchhhhhccCCcEecCCCCHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY----RDAVPLRKMIIRRIPRVSEDMPLYD 292 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~----~~~~~V~dIM~r~v~~V~~~~~l~d 292 (483)
++.++++++++. ++++.|++++++.+||++++ ++++|+++.+|++.... ....++.++|.+++.++.+++++.+
T Consensus 3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~ 80 (124)
T cd04608 3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK 80 (124)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHH
Confidence 567899999999 99999999999999999875 89999999999986321 2246899999999999999999999
Q ss_pred HHHHhHhc---------CCcEEEEEec
Q 011545 293 ILNEFQKG---------HSHIAVVYKD 310 (483)
Q Consensus 293 aL~~m~~~---------~~~~apVVDe 310 (483)
+.+.|... +.+.+||+|+
T Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~v~~~ 107 (124)
T cd04608 81 LSRILETDAFLLVFFEQISSAAIGKEK 107 (124)
T ss_pred HHhhcccCCceEEEecccccccccccc
Confidence 99976432 4555566655
No 62
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=7e-12 Score=109.42 Aligned_cols=91 Identities=16% Similarity=0.309 Sum_probs=78.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc-----------------cccchhhhhcc
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----------------DAVPLRKMIIR 279 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~-----------------~~~~V~dIM~r 279 (483)
++.++++++++. ++++.|.+.+++.+||++++ ++++|+++.+|+...... ...++.++|.+
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd04632 2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS 79 (128)
T ss_pred CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence 456789999999 99999999999999999876 899999999998743211 12468899888
Q ss_pred CCcEecCCCCHHHHHHHhHhcCCcEEEEEe
Q 011545 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYK 309 (483)
Q Consensus 280 ~v~~V~~~~~l~daL~~m~~~~~~~apVVD 309 (483)
+++++++++++.++++.|.+++.+.+||++
T Consensus 80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~ 109 (128)
T cd04632 80 PVITASPNDSVRDAVDRMLENDDSSVVVVT 109 (128)
T ss_pred CCceECCCCcHHHHHHHHHhCCCCeEeEec
Confidence 899999999999999999999999999885
No 63
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=5.6e-12 Score=106.96 Aligned_cols=86 Identities=17% Similarity=0.222 Sum_probs=74.8
Q ss_pred EeCCCChHHHHHHHHHHcC-----CcccccccCCCCcEEEEEEchhhhccccccccchhhhhccCCcEecCCCCHHHHHH
Q 011545 221 LDLDATLTLDTLNAIMTMG-----HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILN 295 (483)
Q Consensus 221 V~~d~tv~~eal~~m~~~~-----~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~l~daL~ 295 (483)
+++++++. ++++.|.+++ +..+||++++ ++++|+|+.+|+++.. .+.++.++|..++.++++++++.++++
T Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~i~~~~~~~~~~~ 77 (109)
T cd04606 2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLAD--PDTPVSDIMDTDVISVSADDDQEEVAR 77 (109)
T ss_pred ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCC--CcchHHHHhCCCCeEEcCCCCHHHHHH
Confidence 57889998 9999998877 4678999865 8999999999998753 235789998788899999999999999
Q ss_pred HhHhcCCcEEEEEec
Q 011545 296 EFQKGHSHIAVVYKD 310 (483)
Q Consensus 296 ~m~~~~~~~apVVDe 310 (483)
.|.+++.+.+||+|+
T Consensus 78 ~~~~~~~~~~~Vv~~ 92 (109)
T cd04606 78 LFEKYDLLALPVVDE 92 (109)
T ss_pred HHHHcCCceeeeECC
Confidence 999999999999987
No 64
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.34 E-value=8.2e-12 Score=106.96 Aligned_cols=92 Identities=17% Similarity=0.255 Sum_probs=78.0
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCC--CCcEEEEEEchhhhccccccccchhhhhccCCcEecC--CCCHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSE--DMPLYD 292 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d--~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v~~V~~--~~~l~d 292 (483)
++.+++.++++. ++++.|.+.+++.+||+|+. .++++|+++.+|++.... ...+++++|..+...+.. ++++.+
T Consensus 3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~ 80 (114)
T cd04602 3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-SETPLSEVMTPREVLVVAPTGITLEE 80 (114)
T ss_pred CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-cCCCHHHhcCCCceEEECCCCCCHHH
Confidence 456789999998 99999999999999999862 379999999999875432 235689998777777755 999999
Q ss_pred HHHHhHhcCCcEEEEEec
Q 011545 293 ILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 293 aL~~m~~~~~~~apVVDe 310 (483)
+++.|++++.+.+||+|+
T Consensus 81 ~l~~~~~~~~~~~pVv~~ 98 (114)
T cd04602 81 ANEILRESKKGKLPIVND 98 (114)
T ss_pred HHHHHHhcCCCceeEECC
Confidence 999999999999999987
No 65
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=9.2e-12 Score=105.81 Aligned_cols=91 Identities=13% Similarity=0.230 Sum_probs=79.3
Q ss_pred EEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc----cccchhhhhccCCcEecCCCCHHHH
Q 011545 218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSEDMPLYDI 293 (483)
Q Consensus 218 VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~----~~~~V~dIM~r~v~~V~~~~~l~da 293 (483)
...+.+++++. ++++.|.+.+++++||++++ ++++|+|+.+|+++.... ...++.++|.+++.++++++++.++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~ 80 (113)
T cd04615 3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKA 80 (113)
T ss_pred CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHH
Confidence 35689999998 99999999999999999875 899999999999864221 2357889988889999999999999
Q ss_pred HHHhHhcCCcEEEEEec
Q 011545 294 LNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 294 L~~m~~~~~~~apVVDe 310 (483)
++.|.+++.+.+||+|+
T Consensus 81 ~~~~~~~~~~~~~Vvd~ 97 (113)
T cd04615 81 RWLMSNNNISRLPVLDD 97 (113)
T ss_pred HHHHHHcCCCeeeEECC
Confidence 99999999999999987
No 66
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.33 E-value=1.3e-11 Score=133.61 Aligned_cols=111 Identities=11% Similarity=0.138 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCC--CCcEEEEEEchhhhccccc
Q 011545 191 HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYR 268 (483)
Q Consensus 191 ~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d--~d~iVGIVs~kDLl~~~~~ 268 (483)
++.+..++.++.++ .. |+ ++++++++++|+. ++++.|.+++++.+||++++ .++++|+|+.+|+.... .
T Consensus 90 E~q~~~Irkvk~~~---~g--mi--~dpvtV~pd~tV~-dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-~ 160 (505)
T PLN02274 90 EEQAAIVRKAKSRR---VG--FV--SDPVVKSPSSTIS-SLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-D 160 (505)
T ss_pred HHHHHHHHHhhccc---cc--cc--CCCeeeCCCCcHH-HHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-c
Confidence 34457777777542 22 65 3778999999999 99999999999999999863 27899999999997543 3
Q ss_pred cccchhhhhccC--CcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 269 DAVPLRKMIIRR--IPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 269 ~~~~V~dIM~r~--v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
.+.+|.++|.++ ++++++++++.++++.|.+++.+.+||+|+
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~ 204 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE 204 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence 356899999866 779999999999999999999999999987
No 67
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.33 E-value=1.1e-11 Score=106.12 Aligned_cols=91 Identities=15% Similarity=0.233 Sum_probs=79.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc--------------cccchhhhhccCCc
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------DAVPLRKMIIRRIP 282 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~--------------~~~~V~dIM~r~v~ 282 (483)
++.+++.+.++. ++++.|.+.++..+||+++ ++++|+++.+|++..... ...++.++|.+++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04585 2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI 78 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCe
Confidence 456789999999 9999999999999999986 899999999999875422 12467888888899
Q ss_pred EecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 283 RVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 283 ~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
++++++++.++++.|.+.+.+.+||+|+
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 106 (122)
T cd04585 79 TVSPDASVEEAAELMLERKISGLPVVDD 106 (122)
T ss_pred EeCCCCcHHHHHHHHHHcCCCceeEECC
Confidence 9999999999999999999999999987
No 68
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.33 E-value=1.1e-11 Score=104.64 Aligned_cols=86 Identities=15% Similarity=0.222 Sum_probs=76.6
Q ss_pred EEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccccchhhhhccCCcEecCCCCHHHHHHHhH
Q 011545 219 FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQ 298 (483)
Q Consensus 219 vtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~l~daL~~m~ 298 (483)
.++++++++. ++++.|.+.+++++||+++ ++++|+++.+|+++... .++.++|..++.+|+++.++.++++.|.
T Consensus 4 ~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~~~~~~~v~~~~~l~~a~~~~~ 77 (104)
T cd04594 4 IKVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYIVRGIPYVRLTSTAEEAWEVMM 77 (104)
T ss_pred eEECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhhhcCCcEEcCCCCHHHHHHHHH
Confidence 3578999999 9999999999999999985 89999999999986432 3577888888899999999999999999
Q ss_pred hcCCcEEEEEec
Q 011545 299 KGHSHIAVVYKD 310 (483)
Q Consensus 299 ~~~~~~apVVDe 310 (483)
+++.+.+||+|+
T Consensus 78 ~~~~~~~~Vv~~ 89 (104)
T cd04594 78 KNKTRWCPVVDD 89 (104)
T ss_pred HcCcceEEEEEC
Confidence 999999999986
No 69
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=9.8e-12 Score=106.15 Aligned_cols=91 Identities=14% Similarity=0.328 Sum_probs=76.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHcC-CcccccccCCCCcEEEEEEchhhhccccc----cccchhhhhccCCcEecCC--CC
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSED--MP 289 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~-~srlPVvd~d~d~iVGIVs~kDLl~~~~~----~~~~V~dIM~r~v~~V~~~--~~ 289 (483)
++.+++.+.++. ++++.|.+++ +..+||+++ ++++|+|+.+|+++.... ...++.++|.+++.+++++ ++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~ 78 (115)
T cd04620 2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQD 78 (115)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccC
Confidence 346789999998 9999998888 667777764 799999999999864322 1257889988888889887 78
Q ss_pred HHHHHHHhHhcCCcEEEEEec
Q 011545 290 LYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 290 l~daL~~m~~~~~~~apVVDe 310 (483)
+.++++.|.+++.+.+||+|+
T Consensus 79 l~~a~~~~~~~~~~~~pVvd~ 99 (115)
T cd04620 79 IFTALSLFRQHQIRHLPVLDD 99 (115)
T ss_pred HHHHHHHHHHhCCceEEEEcC
Confidence 999999999999999999987
No 70
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=1.3e-11 Score=103.49 Aligned_cols=79 Identities=8% Similarity=0.172 Sum_probs=71.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccccchhhhhccCCcEecCCCCHHHHHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~l~daL~~ 296 (483)
++.+++++.++. ++++.|.+++++.+||++++ ++++|+++.+|+..... +.++++++++.++++.
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~-------------~~~v~~~~~l~~a~~~ 66 (96)
T cd04614 2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKSE-------------VVTATKRTTVSECAQK 66 (96)
T ss_pred CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCCC-------------cEEecCCCCHHHHHHH
Confidence 567889999998 99999999999999999865 89999999999986421 6789999999999999
Q ss_pred hHhcCCcEEEEEec
Q 011545 297 FQKGHSHIAVVYKD 310 (483)
Q Consensus 297 m~~~~~~~apVVDe 310 (483)
|.+++.+.+||+|+
T Consensus 67 m~~~~~~~lpVv~~ 80 (96)
T cd04614 67 MKRNRIEQIPIING 80 (96)
T ss_pred HHHhCCCeeeEECC
Confidence 99999999999987
No 71
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.32 E-value=9.4e-12 Score=105.57 Aligned_cols=91 Identities=14% Similarity=0.201 Sum_probs=78.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccc----cc-ccchhhhhccCCcEecCCCCHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY----RD-AVPLRKMIIRRIPRVSEDMPLY 291 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~----~~-~~~V~dIM~r~v~~V~~~~~l~ 291 (483)
++.++.++.++. ++++.|.+++++++||+++ ++++|+|+.+|++.... .. ..++.++|.+++.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~ 78 (113)
T cd04587 2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVL 78 (113)
T ss_pred CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHH
Confidence 566789999998 8999999999999999975 89999999999874321 11 1578899888888999999999
Q ss_pred HHHHHhHhcCCcEEEEEec
Q 011545 292 DILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 292 daL~~m~~~~~~~apVVDe 310 (483)
++++.|.+++.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~l~Vv~~ 97 (113)
T cd04587 79 EALHLMVQGKFRHLPVVDK 97 (113)
T ss_pred HHHHHHHHcCCCcccEECC
Confidence 9999999999999999987
No 72
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.32 E-value=9.6e-12 Score=105.51 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=79.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccc----ccchhhhhccCCcEecCCCCHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD 292 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~----~~~V~dIM~r~v~~V~~~~~l~d 292 (483)
++.++++++++. ++++.+.+.+++++||++++ ++++|+++.+++++..... ..++.++|.+++.++++++++.+
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 80 (114)
T cd04604 3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE 80 (114)
T ss_pred cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence 456788999998 99999998899999999875 8999999999987654321 24689998888899999999999
Q ss_pred HHHHhHhcCCcEEEEEec
Q 011545 293 ILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 293 aL~~m~~~~~~~apVVDe 310 (483)
+++.|.+++.+.+||+|+
T Consensus 81 ~~~~~~~~~~~~~~Vv~~ 98 (114)
T cd04604 81 ALELMEENKITALPVVDD 98 (114)
T ss_pred HHHHHHHcCCCEEEEECC
Confidence 999999999999999986
No 73
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=1.8e-11 Score=103.10 Aligned_cols=90 Identities=23% Similarity=0.268 Sum_probs=79.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccccchhhhhccCCcEecCCCCHHHHHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 296 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~l~daL~~ 296 (483)
+++++..+.++. ++++.|.+.+++++||++++ ++++|+++.++++.... ..++.++|.+++.++++++++.+++..
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (106)
T cd04638 2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPE--EEQLALLMTRDPPTVSPDDDVKEAAKL 77 (106)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhccc--cchHHHHhcCCCceECCCCCHHHHHHH
Confidence 567889999998 89999999999999999876 89999999999986432 236788888888999999999999999
Q ss_pred hHhcCCcEEEEEec
Q 011545 297 FQKGHSHIAVVYKD 310 (483)
Q Consensus 297 m~~~~~~~apVVDe 310 (483)
|.+++.+.+||+|+
T Consensus 78 ~~~~~~~~~~Vvd~ 91 (106)
T cd04638 78 MVENNIRRVPVVDD 91 (106)
T ss_pred HHHcCCCEEEEEEC
Confidence 99999999999986
No 74
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.32 E-value=1.2e-11 Score=105.36 Aligned_cols=87 Identities=21% Similarity=0.182 Sum_probs=76.4
Q ss_pred ccEEEEeCCCChHHHHHHHHHHcCCcccccccCC--CCcEEEEEEchhhhccccccccchhhhhccCCcEecCCCCHHHH
Q 011545 216 SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDI 293 (483)
Q Consensus 216 ~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d--~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~l~da 293 (483)
+++..++++.++. ++.+.+.+.+++++||+++. .++++|+|+.+|+...... +|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-------~m~~~~~~v~~~~~l~~~ 73 (105)
T cd04591 2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-------YIDPSPFTVSPRTSLEKV 73 (105)
T ss_pred CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-------hccCCCceECCCCcHHHH
Confidence 4677889999999 99999999999999999862 3789999999999865432 677888999999999999
Q ss_pred HHHhHhcCCcEEEEEec
Q 011545 294 LNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 294 L~~m~~~~~~~apVVDe 310 (483)
++.|.+++.+.+||+++
T Consensus 74 ~~~~~~~~~~~~pVv~~ 90 (105)
T cd04591 74 HQLFRKLGLRHLLVVDE 90 (105)
T ss_pred HHHHHHcCCCEEEEEEC
Confidence 99999999999999965
No 75
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.32 E-value=6.3e-12 Score=135.80 Aligned_cols=112 Identities=13% Similarity=0.190 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCC--CCcEEEEEEchhhhccccc
Q 011545 191 HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYR 268 (483)
Q Consensus 191 ~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d--~d~iVGIVs~kDLl~~~~~ 268 (483)
+++++++..+.++.. ..++.| .++++++|+. ++++.|.+++++.+||+|++ .++++|+|+.+|+......
T Consensus 87 e~qa~lV~kVk~~~~---g~i~~~----~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~ 158 (502)
T PRK07107 87 ESEAAMVRRVKNYKA---GFVVSD----SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMS 158 (502)
T ss_pred HHHHHHHHHHHHHhc---CCcCCC----CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccC
Confidence 455566555554432 222322 4789999999 99999999999999999862 3799999999999754323
Q ss_pred cccchhhhhcc--CCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 269 DAVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 269 ~~~~V~dIM~r--~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
.+.+|+++|.+ ++.++++++++.++++.|.+++++.+||+|+
T Consensus 159 ~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~ 202 (502)
T PRK07107 159 LDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK 202 (502)
T ss_pred CCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence 34689999986 6788999999999999999999999999997
No 76
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=1.1e-11 Score=106.98 Aligned_cols=91 Identities=13% Similarity=0.180 Sum_probs=79.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc--------------cccchhhhhccCCc
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------DAVPLRKMIIRRIP 282 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~--------------~~~~V~dIM~r~v~ 282 (483)
++.++++++++. ++.+.|.+.+++++||+++ ++++|+++.+|+.+.... ...++.++|.++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04637 2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI 78 (122)
T ss_pred CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence 567889999999 9999999999999999985 799999999999764211 12468888888899
Q ss_pred EecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 283 RVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 283 ~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
++++++++.++++.|.+++.+.+||+|+
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~vv~~ 106 (122)
T cd04637 79 TVSPDTPVDEASKLLLENSISCLPVVDE 106 (122)
T ss_pred eeCCCCcHHHHHHHHHHcCCCeEeEECC
Confidence 9999999999999999999999999987
No 77
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.30 E-value=1.8e-11 Score=103.80 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=79.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccc-----ccccchhhhhccCCcEecCCCCHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-----RDAVPLRKMIIRRIPRVSEDMPLY 291 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~-----~~~~~V~dIM~r~v~~V~~~~~l~ 291 (483)
++.++++++++. ++++.|.+.+++.+||+++ ++++|+++.+|+++... ....++.++|.+++.++++++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04802 2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN 78 (112)
T ss_pred CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHH
Confidence 456789999999 9999999999999999986 48999999999986431 123578899878888999999999
Q ss_pred HHHHHhHhcCCcEEEEEec
Q 011545 292 DILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 292 daL~~m~~~~~~~apVVDe 310 (483)
++++.|.+++.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~~~Vv~~ 97 (112)
T cd04802 79 EAAKLMAKHGIKRLPVVDD 97 (112)
T ss_pred HHHHHHHHcCCCeeEEeeC
Confidence 9999999999999999987
No 78
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.30 E-value=2.5e-11 Score=104.26 Aligned_cols=92 Identities=11% Similarity=0.193 Sum_probs=80.0
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccc-------------ccccchhhhhccCCcE
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-------------RDAVPLRKMIIRRIPR 283 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~-------------~~~~~V~dIM~r~v~~ 283 (483)
++.+++.++++. ++++.|.+.+++++||++++ ++++|+|+.+|+.+... ....++.++|..++.+
T Consensus 2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (121)
T cd04584 2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVIT 79 (121)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeE
Confidence 456789999999 99999999999999999876 89999999999876431 1135688998888999
Q ss_pred ecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 284 VSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 284 V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
+++++++.++++.|.+++.+.+||+|+
T Consensus 80 i~~~~~l~~~~~~~~~~~~~~~~V~~~ 106 (121)
T cd04584 80 VHPLDTVEEAALLMREHRIGCLPVVED 106 (121)
T ss_pred ECCCCcHHHHHHHHHHcCCCeEEEeeC
Confidence 999999999999999999999999986
No 79
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=2e-11 Score=103.56 Aligned_cols=91 Identities=11% Similarity=0.189 Sum_probs=77.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc-----cccchhhhhccCCcEecCCCCHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY 291 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~-----~~~~V~dIM~r~v~~V~~~~~l~ 291 (483)
++.++++++++. ++++.|.++++..++|.+ + ++++|+++.+|+++.... ...++.++|..++.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04625 2 TIYTVAPETLLS-EAVATMAEQDLGSLVVME-R-GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSID 78 (112)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHH
Confidence 567889999999 999999888887777765 3 899999999999865322 13578999888888999999999
Q ss_pred HHHHHhHhcCCcEEEEEec
Q 011545 292 DILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 292 daL~~m~~~~~~~apVVDe 310 (483)
++++.|.+++...+||+|+
T Consensus 79 ~a~~~m~~~~~~~l~Vv~~ 97 (112)
T cd04625 79 EVRRLMVERHLRYLPVLDG 97 (112)
T ss_pred HHHHHHHHcCCCeeeEEEC
Confidence 9999999999999999986
No 80
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.29 E-value=2.5e-11 Score=102.91 Aligned_cols=91 Identities=13% Similarity=0.247 Sum_probs=78.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcc-ccc----cccchhhhhccCCcEecCCCCHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV-DYR----DAVPLRKMIIRRIPRVSEDMPLY 291 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~-~~~----~~~~V~dIM~r~v~~V~~~~~l~ 291 (483)
++.++++++++. ++.+.|.+.+++.+||+++ ++++|+++.+|++.. ... ...++.++|.+.+.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 78 (113)
T cd04622 2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVD 78 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHH
Confidence 567789999999 9999999999999999986 899999999998632 111 12348899888899999999999
Q ss_pred HHHHHhHhcCCcEEEEEec
Q 011545 292 DILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 292 daL~~m~~~~~~~apVVDe 310 (483)
++++.|.+.+.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~~~V~~~ 97 (113)
T cd04622 79 EAARLMREHQVRRLPVVDD 97 (113)
T ss_pred HHHHHHHHcCCCeeeEECC
Confidence 9999999999999999987
No 81
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.28 E-value=2.2e-11 Score=131.69 Aligned_cols=110 Identities=10% Similarity=0.219 Sum_probs=92.0
Q ss_pred HHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCC--CCcEEEEEEchhhhcccccc
Q 011545 192 DETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYRD 269 (483)
Q Consensus 192 eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d--~d~iVGIVs~kDLl~~~~~~ 269 (483)
++.++++.+.+++ +.|++ +++++++++|+. ++++.|.+++++.+||++++ .++++|+|+.+|+.... ..
T Consensus 87 ~~~~~v~kvk~~e-----~g~i~--dpvtv~pd~tv~-eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~~ 157 (495)
T PTZ00314 87 EQVEEVRKVKRFE-----NGFIM--DPYVLSPNHTVA-DVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-DK 157 (495)
T ss_pred HHHHHHhhccccc-----ccccc--CCeecCCCCCHH-HHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-cC
Confidence 4456666666444 46653 667899999999 99999999999999999863 26899999999997543 33
Q ss_pred ccchhhhhcc--CCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 270 AVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 270 ~~~V~dIM~r--~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
..+|+++|.+ ++.++++++++.++++.|.+++.+.+||+|+
T Consensus 158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~ 200 (495)
T PTZ00314 158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND 200 (495)
T ss_pred CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC
Confidence 4689999876 7889999999999999999999999999998
No 82
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.28 E-value=1.5e-11 Score=131.40 Aligned_cols=101 Identities=20% Similarity=0.369 Sum_probs=85.2
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc----cccchhhhhc
Q 011545 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMII 278 (483)
Q Consensus 203 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~----~~~~V~dIM~ 278 (483)
+..++|+++|.+ ++.++.+++++. ++++.|.+++++.+||+|++ ++++|+|+.+|+++.... ...++.++|.
T Consensus 332 l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~ 407 (454)
T TIGR01137 332 LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDAVSKVMS 407 (454)
T ss_pred hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCCHHHhcC
Confidence 688999999985 788999999999 99999999999999999875 789999999999874322 1347999998
Q ss_pred cCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 279 r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
+++.+|++++++.++++.|.+++ .. ||++
T Consensus 408 ~~~~~v~~~~~l~~a~~~~~~~~--~~-vV~~ 436 (454)
T TIGR01137 408 KKFIQIGEGEKLSDLSKFLEKNS--SA-IVTE 436 (454)
T ss_pred CCCeEECCcCcHHHHHHHHHHCC--ee-EEEE
Confidence 88889999999999999998864 34 4544
No 83
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.27 E-value=3.5e-11 Score=101.18 Aligned_cols=89 Identities=22% Similarity=0.437 Sum_probs=75.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccc----ccchhhhhccCCcEecCCCCHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD 292 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~----~~~V~dIM~r~v~~V~~~~~l~d 292 (483)
++.+++.++++. ++.+.|.+++++++||+++ ++++|+++.+|+.+..... ..++.++|.+++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 78 (110)
T cd04609 2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEE 78 (110)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHH
Confidence 456789999999 9999999999999999986 7999999999998764321 25788898888899999999999
Q ss_pred HHHHhHhcCCcEEEEEec
Q 011545 293 ILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 293 aL~~m~~~~~~~apVVDe 310 (483)
+++.|.+ .. .+||+|+
T Consensus 79 ~~~~~~~-~~-~~~vv~~ 94 (110)
T cd04609 79 LSELLDR-GN-VAVVVDE 94 (110)
T ss_pred HHHHHHh-CC-ceeEEec
Confidence 9999998 33 4788887
No 84
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=2.3e-11 Score=104.56 Aligned_cols=91 Identities=15% Similarity=0.304 Sum_probs=79.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc--------------cccchhhhhccCCc
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------DAVPLRKMIIRRIP 282 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~--------------~~~~V~dIM~r~v~ 282 (483)
+++++++++++. ++.+.|.+.+++++||+++ ++++|+++..|+++.... ...++.++|.+++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (121)
T cd04633 2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI 78 (121)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCce
Confidence 456789999999 9999999999999999985 899999999999764321 13478888888899
Q ss_pred EecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 283 RVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 283 ~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
++++++++.++++.|.+.+.+.+||+|+
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 106 (121)
T cd04633 79 TIEPDTSVSDVASLMLENNIGGLPVVDD 106 (121)
T ss_pred EECCCCcHHHHHHHHHHcCCCcccEEEC
Confidence 9999999999999999999999999987
No 85
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.26 E-value=3.1e-11 Score=129.66 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=88.1
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccccchhhhhccCCcEe
Q 011545 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRV 284 (483)
Q Consensus 205 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v~~V 284 (483)
..+++++|++ +++++++++++. ++++.|.+++++.+||+++ ++++|+|+.+|+..... ..++.++|.+++.++
T Consensus 87 ~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~~--~~~V~dIMt~~litv 159 (475)
T TIGR01303 87 FVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVDR--FTQVRDIMSTDLVTA 159 (475)
T ss_pred hcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCCC--CCCHHHHccCCceEe
Confidence 5567889984 668899999999 9999999999999999875 68999999999975432 357999999999999
Q ss_pred cCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 285 SEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 285 ~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
++++++.++++.|.+++.+.+||+|+
T Consensus 160 ~~~~sL~eAl~lM~~~~i~~LPVVD~ 185 (475)
T TIGR01303 160 PADTEPRKAFDLLEHAPRDVAPLVDA 185 (475)
T ss_pred CCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence 99999999999999999999999997
No 86
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.24 E-value=6.1e-11 Score=101.02 Aligned_cols=97 Identities=24% Similarity=0.393 Sum_probs=85.0
Q ss_pred ccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccc--c-chhhhhccCCcEec
Q 011545 209 KDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--V-PLRKMIIRRIPRVS 285 (483)
Q Consensus 209 ~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~--~-~V~dIM~r~v~~V~ 285 (483)
.++|. .+++++.++.++. ++...|.+++++++||+++ ++++|+++.+|+++...... . ++.++|.+++.++.
T Consensus 2 ~~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~ 76 (117)
T COG0517 2 KDIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVD 76 (117)
T ss_pred ccccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEEC
Confidence 34555 4788999999999 9999999999999999975 37999999999998865432 2 58999888999999
Q ss_pred CCCCHHHHHHHhHh-cCCcEEEEEec
Q 011545 286 EDMPLYDILNEFQK-GHSHIAVVYKD 310 (483)
Q Consensus 286 ~~~~l~daL~~m~~-~~~~~apVVDe 310 (483)
++.++.++++.|.+ ++.+.+||+|+
T Consensus 77 ~~~~~~~~~~~m~~~~~~~~lpVv~~ 102 (117)
T COG0517 77 PDTPLEEALELMVERHKIRRLPVVDD 102 (117)
T ss_pred CCCCHHHHHHHHHHHcCcCeEEEEEC
Confidence 99999999999999 79999999998
No 87
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.23 E-value=7.8e-11 Score=97.95 Aligned_cols=92 Identities=20% Similarity=0.316 Sum_probs=79.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccc----cchhhhhccCCcEecCCCCHHH
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA----VPLRKMIIRRIPRVSEDMPLYD 292 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~----~~V~dIM~r~v~~V~~~~~l~d 292 (483)
++..++.+.++. ++.+.|.+.+++++||++++ ++++|+++.+|++....... ..+.++|..++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (113)
T cd02205 2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEE 79 (113)
T ss_pred CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHH
Confidence 456789999999 99999999999999999876 89999999999987653321 1256788888999999999999
Q ss_pred HHHHhHhcCCcEEEEEec
Q 011545 293 ILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 293 aL~~m~~~~~~~apVVDe 310 (483)
+++.|.+.+.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~~V~~~ 97 (113)
T cd02205 80 AAELMLEHGIRRLPVVDD 97 (113)
T ss_pred HHHHHHHcCCCEEEEEcC
Confidence 999999999999999988
No 88
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.21 E-value=3.6e-11 Score=119.28 Aligned_cols=102 Identities=16% Similarity=0.132 Sum_probs=90.0
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc---cccchhhhhccCCc
Q 011545 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIP 282 (483)
Q Consensus 206 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~---~~~~V~dIM~r~v~ 282 (483)
++|+++|.+. ++.++++++++. ++++.|.+.+++.+||++++ ++++|+|+.+|+++.... ...+++++|.+++.
T Consensus 155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~ 231 (268)
T TIGR00393 155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK 231 (268)
T ss_pred hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence 6899999853 277899999999 99999999999999999875 899999999999875322 24679999989999
Q ss_pred EecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 283 RVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 283 ~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
++++++++.++++.|.+++.+.+||+|+
T Consensus 232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 259 (268)
T TIGR00393 232 TFKLDALLLEALEFLERRKITSLVVVDD 259 (268)
T ss_pred EECCCCcHHHHHHHHHHcCCcEEEEECC
Confidence 9999999999999999999999999987
No 89
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=8.5e-11 Score=105.53 Aligned_cols=91 Identities=16% Similarity=0.308 Sum_probs=79.0
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc----------------------------
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------------------------- 268 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~---------------------------- 268 (483)
++++++.++++. ++++.|.+.+++.+||+++ ++++|+++.+|+++....
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
T cd04634 2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE 78 (143)
T ss_pred CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence 467899999999 9999999999999999985 799999999998754211
Q ss_pred --------cccchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 269 --------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 269 --------~~~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~ 128 (143)
T cd04634 79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED 128 (143)
T ss_pred HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence 124577888888999999999999999999999999999986
No 90
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.20 E-value=5.8e-11 Score=101.80 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=75.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHcC-CcccccccCCCCcEEEEEEchhhhccccc-------cccchhhhhccCCcEecCCC
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYR-------DAVPLRKMIIRRIPRVSEDM 288 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~-~srlPVvd~d~d~iVGIVs~kDLl~~~~~-------~~~~V~dIM~r~v~~V~~~~ 288 (483)
++.++++++++. ++++.|.+.+ ++.+||+++ ++++|+|+.+|+++.... ...++.++|..++.++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~ 78 (119)
T cd04598 2 PAPTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADT 78 (119)
T ss_pred CcCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCC
Confidence 445688999999 9999998887 899999986 899999999998754321 23578999888889999999
Q ss_pred CHHHHHHHhHhcCCc---EEEEEec
Q 011545 289 PLYDILNEFQKGHSH---IAVVYKD 310 (483)
Q Consensus 289 ~l~daL~~m~~~~~~---~apVVDe 310 (483)
++.+++..|.+++.+ .++|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~vv~~ 103 (119)
T cd04598 79 PLEEVSRLATGRDSQNLYDGFIVTE 103 (119)
T ss_pred CHHHHHHHHHcCCcccccccEEEee
Confidence 999999999988753 3467877
No 91
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.11 E-value=1.2e-10 Score=124.05 Aligned_cols=106 Identities=15% Similarity=0.185 Sum_probs=92.4
Q ss_pred hcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccc----ccccchhhh
Q 011545 201 LELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY----RDAVPLRKM 276 (483)
Q Consensus 201 l~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~----~~~~~V~dI 276 (483)
-++--.+|.++|+. ..+++++.+++. ++.+.|.+.|.+.+.|++++ +...|||+.+|+....- ..+.+|+++
T Consensus 144 ~e~~~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~ev 219 (610)
T COG2905 144 SEFILTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVSEV 219 (610)
T ss_pred chHHHHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchhhh
Confidence 34445568899984 667899999999 99999999999988888865 89999999999986532 235789999
Q ss_pred hccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 277 IIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 277 M~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
|+.|+.+|..++.+.+|+-.|.+++++++||.++
T Consensus 220 mT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~ 253 (610)
T COG2905 220 MTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED 253 (610)
T ss_pred hccCceeecCcchHHHHHHHHHHhCCceeeeecC
Confidence 9999999999999999999999999999999987
No 92
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.99 E-value=1.2e-09 Score=97.91 Aligned_cols=93 Identities=14% Similarity=0.120 Sum_probs=78.0
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccccc---------------chhhhh----
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV---------------PLRKMI---- 277 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~---------------~V~dIM---- 277 (483)
++.++++++++. ++++.|.+++++.+||+|++ ++++|+|+.+|+++....... .+.++|
T Consensus 2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 79 (133)
T cd04592 2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI 79 (133)
T ss_pred CceEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence 677899999999 99999999999999999876 899999999999875432110 133454
Q ss_pred -----ccCCcEecCCCCHHHHHHHhHhcCCcEEEEEecC
Q 011545 278 -----IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL 311 (483)
Q Consensus 278 -----~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe~ 311 (483)
.+++.++.+++++.++++.|.+++.+.+||+|+.
T Consensus 80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 3678899999999999999999999999999974
No 93
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.96 E-value=3.8e-09 Score=115.74 Aligned_cols=102 Identities=17% Similarity=0.267 Sum_probs=87.4
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc----------------
Q 011545 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------------- 268 (483)
Q Consensus 205 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~---------------- 268 (483)
..+|+|+|++ ++.++++++++. ++++.|.+++++++||+|++ ++++|+|+.+|+.+...+
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~ 142 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN 142 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence 3689999984 788999999999 99999999999999999876 899999999998642000
Q ss_pred --------------------------------------------------------------------------------
Q 011545 269 -------------------------------------------------------------------------------- 268 (483)
Q Consensus 269 -------------------------------------------------------------------------------- 268 (483)
T Consensus 143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~ 222 (546)
T PRK14869 143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAK 222 (546)
T ss_pred HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence
Q ss_pred ---------------------cccchhhhhc-cCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 269 ---------------------DAVPLRKMII-RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 269 ---------------------~~~~V~dIM~-r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
...+|+++|. +++.++++++++.++.+.|.+++.+.+||+|+
T Consensus 223 ~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~ 286 (546)
T PRK14869 223 ENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE 286 (546)
T ss_pred hCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcC
Confidence 0134678888 78999999999999999999999999999998
No 94
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.71 E-value=4.7e-08 Score=73.92 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=36.2
Q ss_pred hhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 273 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 273 V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
|+++|.++++++++++++.++++.|++++.+.+||+|+
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~ 38 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE 38 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec
Confidence 57889999999999999999999999999999999998
No 95
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.59 E-value=4.6e-08 Score=73.95 Aligned_cols=55 Identities=29% Similarity=0.496 Sum_probs=50.6
Q ss_pred cccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccc
Q 011545 208 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 266 (483)
Q Consensus 208 V~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~ 266 (483)
|+++|++ +++++++++++. ++++.|.+++++++||+|++ ++++|+++.+||+++.
T Consensus 1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhh
Confidence 6789996 889999999999 99999999999999999876 9999999999998753
No 96
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.54 E-value=4e-07 Score=95.65 Aligned_cols=92 Identities=13% Similarity=0.208 Sum_probs=76.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccc-----cc-hhhhh------ccCCcEe
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA-----VP-LRKMI------IRRIPRV 284 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~-----~~-V~dIM------~r~v~~V 284 (483)
++..+..+.++. ++++.|.+.+++.+||++.. ++.+|+++..|+.....+.. .. +++.- ..+++++
T Consensus 238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc 315 (381)
T KOG1764|consen 238 NIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC 315 (381)
T ss_pred hheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence 588999999998 99999999999999999976 77899999999876544331 11 32221 2346789
Q ss_pred cCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 285 SEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 285 ~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
.++.++..++..|..+++|++.|||+
T Consensus 316 ~~~ssL~~vi~~lv~~~vHRl~VVd~ 341 (381)
T KOG1764|consen 316 RPTSTLAEVIDKLVAHRVHRLWVVDE 341 (381)
T ss_pred eecchHHHHHHHHHhcCceEEEEEcC
Confidence 99999999999999999999999998
No 97
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=8.6e-07 Score=93.81 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=81.0
Q ss_pred cccccccccCcc-EEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccccchhhhhccCCcEe
Q 011545 206 KTAKDAMTPISK-AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRV 284 (483)
Q Consensus 206 ~tV~dIMtPr~~-VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v~~V 284 (483)
.++.++|.+... .+...++.+.. +++..|...+.+++.|+|++ ++++|+|+.+++.+.... ...+.+.+.....+|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 350 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQ-QQGLDAALIDAPLAV 350 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhc-CCchhhhhccCCcee
Confidence 567888854221 22344666787 89999999999999999876 899999999999765443 346777777778899
Q ss_pred cCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 285 SEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 285 ~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
++++++.+++..|.+.... +||||+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~-~~v~~~ 375 (400)
T PRK10070 351 DAQTPLSELLSHVGQAPCA-VPVVDE 375 (400)
T ss_pred CCCCCHHHHHHHHHhCCCc-EEEECC
Confidence 9999999999999997766 999997
No 98
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.35 E-value=4.5e-06 Score=87.35 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=74.5
Q ss_pred EEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccccchhhhhccCCcEecCCCCHHHHHHHhH
Q 011545 219 FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQ 298 (483)
Q Consensus 219 vtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~l~daL~~m~ 298 (483)
....++.+.. ++++.|...+.....|++++ +++.|+|+.+++....... ..+.+.|...+.+|++++++.+++..|.
T Consensus 253 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (363)
T TIGR01186 253 ITKTADKGPR-SALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKKA-QGLQDVLIDDIYTVDAGTLLRETVRKVL 329 (363)
T ss_pred eeecCCCCHH-HHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhcC-CchhhhhccCCceECCCCcHHHHHHHHH
Confidence 3456677887 89999999999999999876 8999999999988654432 3577887778889999999999999999
Q ss_pred hcCCcEEEEEec
Q 011545 299 KGHSHIAVVYKD 310 (483)
Q Consensus 299 ~~~~~~apVVDe 310 (483)
+++.. +||+|+
T Consensus 330 ~~~~~-~~v~~~ 340 (363)
T TIGR01186 330 KAGIK-VPVVDE 340 (363)
T ss_pred hCCCC-EEEECC
Confidence 99988 999998
No 99
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.32 E-value=1.5e-06 Score=89.96 Aligned_cols=136 Identities=11% Similarity=0.143 Sum_probs=104.0
Q ss_pred ccCHHHHHHHHhhhcccccc-CCCCCHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccc
Q 011545 166 LLRRAELKTFVNFHGNEAGK-GGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 244 (483)
Q Consensus 166 ~~s~eEL~~Lv~~~~~e~~e-~G~L~~eE~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlP 244 (483)
.+++.|....+.+++--+-= ..-=.++++.+++.+-.|.. .-++ +.+.+.++.|+. ++++.-..++++.+|
T Consensus 72 TVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~---g~~~----~p~v~sp~~tvg-~v~~~k~~~gF~g~p 143 (503)
T KOG2550|consen 72 TVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYEN---GFIN----NPIVISPTTTVG-EVKEAKEKHGFSGIP 143 (503)
T ss_pred ccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhc---cccc----CCcccCCcccch-hhhhhcccccccccc
Confidence 56677776555443210000 01125677888999888875 3333 346689999999 999999999999999
Q ss_pred cccCC--CCcEEEEEEchhhhccccccccchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 245 VYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 245 Vvd~d--~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
|.++. ..+++|+|+.+|+-.. .+..+.+.++|+..+++.+...++.++=+.+++++...+||||+
T Consensus 144 vTe~g~~~~KLvG~vtsrdi~f~-~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~ 210 (503)
T KOG2550|consen 144 VTEDGKRGSKLVGIITSRDIQFL-EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD 210 (503)
T ss_pred cccCCcccceeEEEEehhhhhhh-hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceecc
Confidence 99632 2589999999998655 44467899999888899999999999999999999999999998
No 100
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.32 E-value=7.6e-07 Score=96.14 Aligned_cols=105 Identities=21% Similarity=0.250 Sum_probs=84.2
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCC----cEEEEEEchhhhcccc------c----
Q 011545 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPT----NIIGLILVKNLLSVDY------R---- 268 (483)
Q Consensus 203 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d----~iVGIVs~kDLl~~~~------~---- 268 (483)
+.+.+++|+|.+ ++++++.-..+. .+.+.++.+.|..+||+|+..+ ++.|+|-...++.... +
T Consensus 579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~ 655 (762)
T KOG0474|consen 579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST 655 (762)
T ss_pred hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence 456789999986 899999999998 8999999999999999986433 6788887777653210 0
Q ss_pred ----------------c----------------ccchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 269 ----------------D----------------AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 269 ----------------~----------------~~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
+ -.++..+|...+++|++++++..++..|+.-+.+++.||+.
T Consensus 656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~ 729 (762)
T KOG0474|consen 656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK 729 (762)
T ss_pred cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC
Confidence 0 02234456666889999999999999999999999999987
No 101
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.03 E-value=2.6e-06 Score=91.50 Aligned_cols=100 Identities=14% Similarity=0.164 Sum_probs=84.1
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccccchhhhhccCCc
Q 011545 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIP 282 (483)
Q Consensus 203 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v~ 282 (483)
.++.+++++|++ +++++++++++. ++++.|+++++..+||+|++ ++++|+|+.+|++....++ ..+++|.....
T Consensus 192 ~~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~--~~ed~~~~~gv 265 (449)
T TIGR00400 192 KPEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSE--ATEDFYMIAAV 265 (449)
T ss_pred CCCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhh--hHHHHHHhcCC
Confidence 356789999985 678899999998 99999999999999999876 8999999999999876554 34677765555
Q ss_pred EecCCCCHHHHHHHhHhcCCcEEEEE
Q 011545 283 RVSEDMPLYDILNEFQKGHSHIAVVY 308 (483)
Q Consensus 283 ~V~~~~~l~daL~~m~~~~~~~apVV 308 (483)
+..++..+.+++..|.+++...++|.
T Consensus 266 ~~~~~~~l~~~~~~~~~~R~~wL~v~ 291 (449)
T TIGR00400 266 KPLDDSYFDTSILVMAKNRIIWLLVL 291 (449)
T ss_pred CCCcchhhhchHHHHHHhccchHHHH
Confidence 55567788999999999999998885
No 102
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.87 E-value=1.9e-05 Score=67.21 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=49.8
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 205 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
+.++.++|.. .+.++.+++++. ++++.|.+++.+++||++++ ++++|+|+.+|+++
T Consensus 55 ~~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~ 110 (111)
T cd04603 55 TLKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR 110 (111)
T ss_pred ccChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence 3568999974 567899999998 99999999999999999876 89999999999975
No 103
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.80 E-value=3.4e-05 Score=75.97 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=38.9
Q ss_pred ccchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 270 ~~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
..+|.++|.+++.++.+++++.++.+.|.+++++.+||+|+
T Consensus 171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~ 211 (294)
T COG2524 171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD 211 (294)
T ss_pred cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC
Confidence 35789999999999999999999999999999999999998
No 104
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.75 E-value=5.6e-05 Score=65.33 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=49.3
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 206 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.+|+++|.+ ++.++++++++. ++++.|.+.++..+||++++ ++++|+|+.+||..
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence 679999985 677899999999 99999999999999999875 78999999999864
No 105
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.73 E-value=4.1e-05 Score=64.99 Aligned_cols=58 Identities=26% Similarity=0.409 Sum_probs=50.7
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 205 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
+.++.++|.+...+.++.+++++. ++++.|.+++.+++||++++ ++++|+|+.+|+++
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~~-~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVEDS-GQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcCC-CcEEEEEeccceec
Confidence 567899998644567899999999 99999999999999999874 79999999999875
No 106
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.73 E-value=5.2e-05 Score=63.88 Aligned_cols=59 Identities=22% Similarity=0.362 Sum_probs=51.2
Q ss_pred cCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 202 ~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.+...++.++|.+ ++.++++++++. ++++.|.+++...+||++++ ++++|+|+.+|+++
T Consensus 55 ~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~ 113 (114)
T cd04604 55 DILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDLLR 113 (114)
T ss_pred ccccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence 4455679999975 567899999999 99999999999999999865 89999999999975
No 107
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.69 E-value=9.8e-05 Score=80.41 Aligned_cols=101 Identities=17% Similarity=0.230 Sum_probs=72.7
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccccchhhhhccCC-
Q 011545 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRI- 281 (483)
Q Consensus 203 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v- 281 (483)
..+.+|+++|++..+++++++++++. ++++.|.++++.++||+|++ ++++|+|+.+|+++..... ....+-.-|-.
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~~~P-~a~~d~~grL~V 234 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHKENP-LELLDSSKRYVV 234 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcccCh-hhhhhhccCeee
Confidence 45678999999766889999999999 99999999999999999865 7899999999999864221 11122101110
Q ss_pred -cEecCCCCHHHHHHHhHhcCCcEEEE
Q 011545 282 -PRVSEDMPLYDILNEFQKGHSHIAVV 307 (483)
Q Consensus 282 -~~V~~~~~l~daL~~m~~~~~~~apV 307 (483)
..+... ...+-++.+.+.+.+.+.|
T Consensus 235 ~~av~~~-~~~~ra~~Lv~aGvd~i~v 260 (502)
T PRK07107 235 GAGINTR-DYAERVPALVEAGADVLCI 260 (502)
T ss_pred eeccChh-hHHHHHHHHHHhCCCeEee
Confidence 123332 3456666777788877655
No 108
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.67 E-value=6.2e-05 Score=64.65 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=51.6
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCC--CcEEEEEEchhhhc
Q 011545 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP--TNIIGLILVKNLLS 264 (483)
Q Consensus 203 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~--d~iVGIVs~kDLl~ 264 (483)
+.+.++.++|+...++.++++++++. ++++.|.++++.++||++++. ++++|+|+.+|+++
T Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 55 LQKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred ccCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 35667889997323678999999998 999999999999999998652 58999999999875
No 109
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.66 E-value=0.0001 Score=63.73 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=37.4
Q ss_pred cchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 271 ~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~ 97 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD 97 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC
Confidence 4689999889999999999999999999999999999997
No 110
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.64 E-value=6.6e-05 Score=64.05 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=50.3
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.+.+++++|.. ++.++.+++++. ++++.|.+++..++||++++ ++++|+|+.+|++.
T Consensus 57 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~ 113 (114)
T cd04619 57 CTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK 113 (114)
T ss_pred ccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence 44678899974 677899999998 99999999999999999865 79999999999874
No 111
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.63 E-value=5.4e-05 Score=83.18 Aligned_cols=103 Identities=14% Similarity=0.096 Sum_probs=80.0
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc---------------
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------- 268 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~--------------- 268 (483)
...+|+++|+. .++.++++++++. ++.+.|.++++.++||+|++ ++++|+|+.+|++.....
T Consensus 244 ~~~~V~~iM~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~ 320 (546)
T PRK14869 244 QSIPVSYIMTT-EDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSPVRKKVILVDHNEKSQAVE 320 (546)
T ss_pred cCCCHHHhccC-CCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhccccCceEEEcCcccccccc
Confidence 36789999982 4788999999999 99999999999999999976 899999999999864321
Q ss_pred -----------cccchhhhhccCCcEe---cCCCCHHHHHHHhHhcCCcEEEEEe
Q 011545 269 -----------DAVPLRKMIIRRIPRV---SEDMPLYDILNEFQKGHSHIAVVYK 309 (483)
Q Consensus 269 -----------~~~~V~dIM~r~v~~V---~~~~~l~daL~~m~~~~~~~apVVD 309 (483)
+..++.++|.+.+..+ +...+...+.+.|++.+....|++.
T Consensus 321 ~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia 375 (546)
T PRK14869 321 GIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA 375 (546)
T ss_pred chhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH
Confidence 0113456666655543 4466677888889999888877764
No 112
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.57 E-value=0.00028 Score=76.94 Aligned_cols=102 Identities=22% Similarity=0.283 Sum_probs=77.2
Q ss_pred cccccccCc---cEEEEeCC-CChHHHHHHHHHHcCCcccccc-cCCCCcEEEEEEchhhhcccc------c--------
Q 011545 208 AKDAMTPIS---KAFSLDLD-ATLTLDTLNAIMTMGHSRVPVY-SGNPTNIIGLILVKNLLSVDY------R-------- 268 (483)
Q Consensus 208 V~dIMtPr~---~VvtV~~d-~tv~~eal~~m~~~~~srlPVv-d~d~d~iVGIVs~kDLl~~~~------~-------- 268 (483)
..++|.|+. ....++.+ .+++ +...+|.++.|+.+||+ +++..+++|+|..||+..... +
T Consensus 545 ~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~ 623 (696)
T KOG0475|consen 545 AIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIY 623 (696)
T ss_pred hhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccc
Confidence 455555533 24555555 8998 99999999999999987 556678999999999864311 0
Q ss_pred -------------cccchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 269 -------------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 269 -------------~~~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
....++++|.-.+.+|...++.+.++++|++-+.+...|..+
T Consensus 624 f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~ 678 (696)
T KOG0475|consen 624 FNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTKN 678 (696)
T ss_pred cCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEccC
Confidence 023467777677889999999999999999999888877543
No 113
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.52 E-value=0.00013 Score=61.42 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=42.0
Q ss_pred EEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 218 VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
+.++.+++++. ++++.|.+++..++||++++.++++|+|+.+|+++
T Consensus 52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 67899999999 99999999999999999864478999999999975
No 114
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=97.51 E-value=9.8e-05 Score=74.04 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=38.6
Q ss_pred ccchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 270 ~~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
+.+..+||+|++.+|+++++++++.++|++++++-+||+|+
T Consensus 244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~ 284 (382)
T COG3448 244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDE 284 (382)
T ss_pred cccHHHhcCccceecCCcCChHHHHHHHHHcCccccccccc
Confidence 34678899999999999999999999999999999999999
No 115
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.49 E-value=0.00015 Score=61.40 Aligned_cols=56 Identities=14% Similarity=0.354 Sum_probs=49.2
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 205 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
+.++.++|.+ .+.++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 112 (113)
T cd04607 57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLATLDDLLS 112 (113)
T ss_pred CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence 3568899964 567899999999 99999999999999999865 89999999999874
No 116
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.49 E-value=0.00015 Score=61.50 Aligned_cols=58 Identities=21% Similarity=0.391 Sum_probs=51.2
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 203 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
+...++.++|.+ ++.++++++++. ++++.|.+.+.+++||++++ ++++|+|+.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~ 121 (122)
T cd04585 64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR 121 (122)
T ss_pred hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence 356779999975 678899999998 99999999999999999865 79999999999875
No 117
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.46 E-value=0.00024 Score=76.94 Aligned_cols=96 Identities=10% Similarity=0.175 Sum_probs=73.1
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccccchhhh----hccCC
Q 011545 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKM----IIRRI 281 (483)
Q Consensus 206 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~V~dI----M~r~v 281 (483)
..++++|++ ++.++++++++. ++++.|.+++...+||+|++ ++++|+|+.+||++..... +..+. +....
T Consensus 148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~--~~~~~~g~l~V~aa 221 (479)
T PRK07807 148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYT--PAVDAAGRLRVAAA 221 (479)
T ss_pred CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCC--chhhhhhccchHhh
Confidence 569999984 788999999998 99999999999999999875 7999999999999864332 22221 11111
Q ss_pred cEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 282 ~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
+.......+.+..|.+.+... +|+|-
T Consensus 222 --v~~~~~~~~~a~~Lv~aGvd~-i~~D~ 247 (479)
T PRK07807 222 --VGINGDVAAKARALLEAGVDV-LVVDT 247 (479)
T ss_pred --hccChhHHHHHHHHHHhCCCE-EEEec
Confidence 333345778888899999888 56674
No 118
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.44 E-value=0.00019 Score=61.58 Aligned_cols=58 Identities=21% Similarity=0.452 Sum_probs=51.3
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 203 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
....+++++|.+ .+.++++++++. ++++.|.+.+.+++||++++ ++++|+|+.+|++.
T Consensus 66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~ 123 (124)
T cd04600 66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIA 123 (124)
T ss_pred cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhc
Confidence 456679999974 678899999998 99999999999999999865 89999999999975
No 119
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.44 E-value=0.0002 Score=60.66 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=48.8
Q ss_pred cccccccccccCccEEEEeCC--CChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 204 TEKTAKDAMTPISKAFSLDLD--ATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d--~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.+.++.++|.+ ++.+++++ +++. ++++.|.+++..++||++++ ++++|+|+.+|+++
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~ 114 (115)
T cd04620 56 SDLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ 114 (115)
T ss_pred cccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence 34678899974 56778877 6888 89999999999999999876 89999999999976
No 120
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.43 E-value=0.00027 Score=59.47 Aligned_cols=55 Identities=16% Similarity=0.377 Sum_probs=48.6
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 205 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
+.++.++|.+ ++.++++++++. ++++.|.+++..++||+++ ++++|+|+.+|+++
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence 4579999964 577899999998 9999999999999999974 79999999999975
No 121
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.43 E-value=0.00027 Score=58.87 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=47.5
Q ss_pred ccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 207 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
+++++|.+ .+..+++++++. ++++.|.++++..+||++++ ++++|+|+.+|++.
T Consensus 52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 47889975 456789999998 99999999999999999875 78999999999875
No 122
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.41 E-value=0.00012 Score=63.68 Aligned_cols=60 Identities=25% Similarity=0.364 Sum_probs=47.9
Q ss_pred cccccccccccCccEEEEe----CCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 204 TEKTAKDAMTPISKAFSLD----LDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~----~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.+.+++++|++...++.++ +++++. ++++.|.+++.+++||++++.++++|+|+.+|+++
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 4567999997533333443 688998 89999999999999999864358999999999875
No 123
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.40 E-value=0.00023 Score=59.34 Aligned_cols=56 Identities=20% Similarity=0.418 Sum_probs=49.1
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 205 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
+..++++|.+ .+.++++++++. ++++.|.+++..++||++++ |+++|+++.+|+++
T Consensus 51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSK--DLVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCC--CCeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence 3568999975 567889999998 99999999999999999876 79999999999875
No 124
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.38 E-value=0.00026 Score=61.12 Aligned_cols=52 Identities=31% Similarity=0.346 Sum_probs=45.5
Q ss_pred cccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhh
Q 011545 208 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLL 263 (483)
Q Consensus 208 V~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl 263 (483)
+.++|. .++.+++++.++. ++++.|.+++.+++||++++ ++++|+|+.+|+.
T Consensus 70 ~~~~~~--~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGT--SDVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR 121 (123)
T ss_pred hcccCc--CCceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence 345776 4678899999998 99999999999999999876 7899999999975
No 125
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.37 E-value=0.00074 Score=71.25 Aligned_cols=97 Identities=18% Similarity=0.276 Sum_probs=77.3
Q ss_pred ccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccc----------ccchhhh---hcc
Q 011545 213 TPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----------AVPLRKM---IIR 279 (483)
Q Consensus 213 tPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~----------~~~V~dI---M~r 279 (483)
+++...+.+.+..++- ++...+.++++.|+||.|...++++.+++.+-+++..... ..++.+. +..
T Consensus 159 ~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~ 237 (381)
T KOG1764|consen 159 TLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWS 237 (381)
T ss_pred ccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhh
Confidence 3444547888999988 8999999999999999985568999999999998764321 1122222 123
Q ss_pred CCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 280 ~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
.+..+.+++++.+|++.|..+++.-+||||+
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~ 268 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDE 268 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcC
Confidence 4778999999999999999999999999998
No 126
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.37 E-value=0.00025 Score=59.60 Aligned_cols=57 Identities=18% Similarity=0.391 Sum_probs=50.2
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.+.+++++|.+ ++.+++++.++. ++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus 51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~ 107 (108)
T cd04596 51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK 107 (108)
T ss_pred ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence 35579999974 677899999999 99999999999999999865 79999999999875
No 127
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.34 E-value=0.00032 Score=59.03 Aligned_cols=55 Identities=20% Similarity=0.361 Sum_probs=48.8
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 206 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.++.++|.+ .+.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++.
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence 678899964 567899999998 99999999999999999875 89999999999874
No 128
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.33 E-value=0.00048 Score=74.90 Aligned_cols=100 Identities=16% Similarity=0.223 Sum_probs=72.6
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccccc---chhhhhccCC
Q 011545 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV---PLRKMIIRRI 281 (483)
Q Consensus 205 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~---~V~dIM~r~v 281 (483)
..+++++|++ .+++++++++++. ++++.|.++++..+||++++ ++++|+|+.+||++....... .-..++....
T Consensus 146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aa 222 (486)
T PRK05567 146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAA 222 (486)
T ss_pred CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhCCCcccccCCCEEEEee
Confidence 4579999983 4678899999999 99999999999999999876 899999999999876421110 0111212222
Q ss_pred cEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 282 PRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 282 ~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
..+.++ -.+.++.|.+.+.+.+ |+|.
T Consensus 223 i~~~~~--~~e~a~~L~~agvdvi-vvD~ 248 (486)
T PRK05567 223 VGVGAD--NEERAEALVEAGVDVL-VVDT 248 (486)
T ss_pred cccCcc--hHHHHHHHHHhCCCEE-EEEC
Confidence 333332 2788889999999955 6664
No 129
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.32 E-value=0.00033 Score=59.04 Aligned_cols=57 Identities=14% Similarity=0.341 Sum_probs=49.9
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.+.++.++|.+ ++.+++.++++. ++++.|.+++..++||++++ ++++|+++.+|+++
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 KDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR 112 (113)
T ss_pred cCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence 45678899974 678899999998 99999999999999999865 79999999999875
No 130
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.29 E-value=0.00033 Score=58.69 Aligned_cols=55 Identities=15% Similarity=0.421 Sum_probs=49.1
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 205 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
+.+++++|.+ ++.+++++.++. ++++.|.+.+.+++||+++ ++++|+|+.+|+++
T Consensus 58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence 5678999975 678899999998 9999999999999999976 79999999999875
No 131
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.29 E-value=0.00034 Score=59.37 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=49.6
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.+.+++++|.. ++.++++++++. ++++.|.+++...+||+++ ++++|+|+.+|+++
T Consensus 58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence 45678899963 678999999998 9999999999999999986 78999999999875
No 132
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.28 E-value=0.00031 Score=60.31 Aligned_cols=57 Identities=16% Similarity=0.405 Sum_probs=50.3
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.+.++.++|.+ .+.++++++++. ++++.|.+.+...+||++++ ++++|+|+.+|+++
T Consensus 68 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~ 124 (125)
T cd04631 68 INEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK 124 (125)
T ss_pred hhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence 45678899974 678999999998 99999999999999999865 78999999999975
No 133
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.28 E-value=0.00033 Score=58.85 Aligned_cols=57 Identities=25% Similarity=0.389 Sum_probs=49.7
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 205 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
..++.++|.+ ++.++++++++. ++++.|.+.+...+||++++.++++|+++.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 4789999985 577899999998 99999999999999999761278999999999874
No 134
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.28 E-value=0.00065 Score=73.60 Aligned_cols=98 Identities=10% Similarity=0.127 Sum_probs=70.1
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccccchhhhhccCC--cE
Q 011545 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRI--PR 283 (483)
Q Consensus 206 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~V~dIM~r~v--~~ 283 (483)
.+++++|++ +++++++++++. ++++.|.++++..+||+|++ ++++|+|+.+||++..... +..+..-+.. --
T Consensus 146 ~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~~--~~~d~~grl~Vgaa 219 (475)
T TIGR01303 146 TQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIYT--PATDAAGRLRIGAA 219 (475)
T ss_pred CCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhCC--chhhhccCceehhe
Confidence 579999985 788999999998 99999999999999999865 8899999999999754322 2222100000 01
Q ss_pred ecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 284 VSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 284 V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
+.......+.+..+.+.+...+ |+|-
T Consensus 220 v~~~~~~~~ra~~Lv~aGVd~i-~~D~ 245 (475)
T TIGR01303 220 VGINGDVGGKAKALLDAGVDVL-VIDT 245 (475)
T ss_pred eeeCccHHHHHHHHHHhCCCEE-EEeC
Confidence 3334556677777777777664 4453
No 135
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.27 E-value=0.00038 Score=59.24 Aligned_cols=57 Identities=14% Similarity=0.261 Sum_probs=46.7
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 206 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
..++++|.+....+..++++++. ++++.|.+++..++||++++ ++++|+|+.+|+++
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence 45889997543333334499998 99999999999999999865 78999999999874
No 136
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.26 E-value=0.00041 Score=60.97 Aligned_cols=57 Identities=21% Similarity=0.345 Sum_probs=50.6
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 203 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
....+++++|.+ ++.++++++++. ++++.|.+.+.+++||++ + ++++|+|+.+|+++
T Consensus 78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~ 134 (135)
T cd04586 78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLR 134 (135)
T ss_pred hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhc
Confidence 356789999974 678899999998 999999999999999998 4 89999999999875
No 137
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.26 E-value=0.00038 Score=71.41 Aligned_cols=58 Identities=24% Similarity=0.401 Sum_probs=51.9
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcc
Q 011545 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (483)
Q Consensus 203 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~ 265 (483)
+.+.+|+++|++ ++.++.+++++. ++++.|.+++..++||+++ ++++|+|+.+|++++
T Consensus 266 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~ 323 (326)
T PRK10892 266 LRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA 323 (326)
T ss_pred cccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence 456789999985 778999999999 9999999999999999974 789999999999864
No 138
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.26 E-value=0.00084 Score=73.28 Aligned_cols=102 Identities=11% Similarity=0.131 Sum_probs=71.8
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccc--cchhhhhccCC
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--VPLRKMIIRRI 281 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~--~~V~dIM~r~v 281 (483)
.+.+|+++|++...++++++++++. ++++.|.+++..++||+|++ ++++|+|+.+|+++...... .+..|-.-|-.
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~ 238 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLL 238 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCcCccccccCCCCCEE
Confidence 4678999999765688999999999 99999999999999999865 79999999999987643210 11111101101
Q ss_pred --cEecCCCCHHHHHHHhHhcCCcEEEE
Q 011545 282 --PRVSEDMPLYDILNEFQKGHSHIAVV 307 (483)
Q Consensus 282 --~~V~~~~~l~daL~~m~~~~~~~apV 307 (483)
..|.....-.+-++.+.+.+..++.|
T Consensus 239 vgaavg~~~~~~~r~~~l~~ag~d~i~i 266 (505)
T PLN02274 239 VGAAIGTRESDKERLEHLVKAGVDVVVL 266 (505)
T ss_pred EEEEEcCCccHHHHHHHHHHcCCCEEEE
Confidence 12444444456666777777777544
No 139
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.25 E-value=0.00042 Score=58.28 Aligned_cols=56 Identities=18% Similarity=0.332 Sum_probs=48.9
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 205 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
..++.++|.+ .+.++++++++. ++++.|.+.+..++||++++ ++++|+++.+|+++
T Consensus 57 ~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 112 (113)
T cd04622 57 TTTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR 112 (113)
T ss_pred cCCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 3458999974 677899999998 99999999999999999865 79999999999875
No 140
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.25 E-value=0.0004 Score=70.91 Aligned_cols=58 Identities=19% Similarity=0.284 Sum_probs=51.5
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~ 265 (483)
.+.+|+++|++ ++.++.+++++. ++++.|.+++..++||++++ ++++|+|+.+|++++
T Consensus 261 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~~ 318 (321)
T PRK11543 261 LTTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQA 318 (321)
T ss_pred cCCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHhc
Confidence 34569999985 677899999999 99999999999999999875 799999999999864
No 141
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.23 E-value=0.00053 Score=57.26 Aligned_cols=56 Identities=23% Similarity=0.437 Sum_probs=47.0
Q ss_pred ccccccccccCccEEEEeC-CCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 205 EKTAKDAMTPISKAFSLDL-DATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 205 ~~tV~dIMtPr~~VvtV~~-d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
+.++.++|.. .+..+.. ++++. ++++.|.+.++.++||++++ ++++|+|+.+|+++
T Consensus 53 ~~~v~~~~~~--~~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTP--ENLLTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhccc--CceEEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence 4578899964 3444566 99998 99999999999999999865 79999999999875
No 142
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.22 E-value=0.00051 Score=58.33 Aligned_cols=56 Identities=23% Similarity=0.490 Sum_probs=48.2
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCC-CCcEEEEEEchhhhc
Q 011545 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLS 264 (483)
Q Consensus 206 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d-~d~iVGIVs~kDLl~ 264 (483)
.+++++|.+ ++.++++++++. ++++.|.+++..++||++++ .++++|+|+.+|+++
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 58 SAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred ccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 347888874 678899999998 99999999999999999764 268999999999875
No 143
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.22 E-value=0.00074 Score=57.06 Aligned_cols=53 Identities=25% Similarity=0.510 Sum_probs=47.7
Q ss_pred ccccccccCccEEEEeCCCChHHHHHHHHHH-cCCcccccccCCCC-cEEEEEEchhhh
Q 011545 207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMT-MGHSRVPVYSGNPT-NIIGLILVKNLL 263 (483)
Q Consensus 207 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~-~~~srlPVvd~d~d-~iVGIVs~kDLl 263 (483)
++.++|+. .++++.++.++. ++.+.|.+ ++++++||++++ + +++|+++.+|++
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~-~~~lvGivt~~di~ 117 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDD-GGKLVGIITLSDIL 117 (117)
T ss_pred cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECC-CCeEEEEEEHHHcC
Confidence 69999985 778999999999 99999999 799999999875 5 999999999974
No 144
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.22 E-value=0.00041 Score=59.25 Aligned_cols=57 Identities=16% Similarity=0.391 Sum_probs=50.4
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 203 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
+.+.++.++|.+ ++.++++++++. ++++.|.+.+.+.+||+++ ++++|+++.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 456678899974 678899999999 9999999999999999986 79999999999975
No 145
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.21 E-value=0.00089 Score=72.96 Aligned_cols=61 Identities=15% Similarity=0.264 Sum_probs=55.1
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 266 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~ 266 (483)
.+.+|+++|+++.++++++++.++. ++++.|.+++...+||++++ ++++|+|+.+|+++..
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNR 217 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhcc
Confidence 3568999999767889999999998 99999999999999999876 8999999999999763
No 146
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.21 E-value=0.00098 Score=46.42 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=28.2
Q ss_pred CCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 280 ~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
++.++++++++.++++.|.+.+.+.+||+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 31 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDE 31 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEECC
Confidence 3567899999999999999999999999987
No 147
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.21 E-value=0.00049 Score=57.91 Aligned_cols=55 Identities=22% Similarity=0.457 Sum_probs=48.6
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 205 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
+.++.++|. +.+.++.+++++. ++++.|.+++..++||+++ ++++|+|+..|++.
T Consensus 56 ~~~v~~~~~--~~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVS--QDVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhc--CCcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence 457888997 4677899999998 9999999999999999986 78999999999874
No 148
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.20 E-value=0.00043 Score=61.51 Aligned_cols=56 Identities=21% Similarity=0.369 Sum_probs=49.7
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.+.+++++|++ ++..+++++++. ++++.|.+.++.++||+++ ++++|+|+.+|+++
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence 45689999975 567899999998 9999999999999999975 79999999999875
No 149
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.20 E-value=0.00055 Score=58.76 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=45.3
Q ss_pred ccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 209 KDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 209 ~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
+++|. .++.++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|+++
T Consensus 68 ~~~~~--~~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~~~Givt~~di~~ 119 (120)
T cd04641 68 RSQDF--EGVRTCSPDDCLR-TIFDLIVKARVHRLVVVDEN-KRVEGIISLSDILQ 119 (120)
T ss_pred cccCC--CCCeEEcCCCcHH-HHHHHHHhcCccEEEEECCC-CCEEEEEEHHHhhc
Confidence 45554 3667899999999 99999999999999999876 88999999999875
No 150
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.20 E-value=0.00051 Score=58.72 Aligned_cols=58 Identities=14% Similarity=0.316 Sum_probs=50.6
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 203 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
....++.++|. .++.++++++++. ++++.|.+.+...+||++++ ++++|+++.+|++.
T Consensus 64 ~~~~~v~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~ 121 (122)
T cd04803 64 ERDVPVAEVMK--TDVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR 121 (122)
T ss_pred ccCcCHHHhhC--CCCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence 35667889996 4678899999998 99999999999999999875 79999999999875
No 151
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.19 E-value=0.00053 Score=57.73 Aligned_cols=57 Identities=18% Similarity=0.341 Sum_probs=50.0
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcc
Q 011545 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (483)
Q Consensus 205 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~ 265 (483)
+.+++++|.+ ++..+++++++. ++++.|.+.+...+||++++ ++++|+|+..|+++.
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence 4578999975 578899999998 99999999999999999865 899999999999854
No 152
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.19 E-value=0.0005 Score=58.79 Aligned_cols=57 Identities=16% Similarity=0.402 Sum_probs=50.1
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
...++.++|.+ ++.+++.++++. ++++.|.+++.+.+||++++ ++++|+++.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence 45678899964 678899999998 99999999999999999875 89999999999875
No 153
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.18 E-value=0.00055 Score=57.35 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=47.2
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 206 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.++.++|.+ ...+++++.++. ++++.|.+++..++||+++ ++++|+++.+|++.
T Consensus 50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~iGvit~~dl~~ 103 (104)
T cd04594 50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVDD--GKFKGIVTLDSILD 103 (104)
T ss_pred cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEEC--CEEEEEEEHHHhhc
Confidence 357888875 567899999998 9999999999999999973 79999999999875
No 154
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.18 E-value=0.00065 Score=56.82 Aligned_cols=55 Identities=25% Similarity=0.404 Sum_probs=48.4
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 206 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.++.++|.+ ++.+++.++++. ++++.|.+.+...+||++++ ++++|+|+.+|+++
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence 467788874 678899999998 99999999999999999864 79999999999875
No 155
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.17 E-value=0.00049 Score=63.48 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=37.2
Q ss_pred cchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 271 ~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
...+.+|.+|+++|.+++++.++++.|+++++..+||+++
T Consensus 65 ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~ 104 (187)
T COG3620 65 ITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE 104 (187)
T ss_pred EeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC
Confidence 3457789999999999999999999999999999999987
No 156
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.17 E-value=0.00053 Score=57.69 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=49.4
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.+.+++++|.+ ++..+++++++. ++++.|.+++..++||+++ ++++|+|+.+|+++
T Consensus 55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence 45678899974 678899999998 9999999999999999975 78999999999875
No 157
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.16 E-value=0.00052 Score=57.81 Aligned_cols=56 Identities=21% Similarity=0.392 Sum_probs=49.3
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.+.++.++|.+ .+.++++++++. ++++.|.+++..++||+++ ++++|+|+.+|+++
T Consensus 58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 113 (114)
T cd04629 58 GVATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR 113 (114)
T ss_pred CCccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence 35678899975 567899999999 9999999999999999986 79999999999975
No 158
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.16 E-value=0.00048 Score=60.27 Aligned_cols=56 Identities=23% Similarity=0.418 Sum_probs=49.4
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
...++.++|.+ ++..+++++++. ++++.|.+.+..++||+++ ++++|+++.+|+++
T Consensus 76 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~ 131 (132)
T cd04636 76 LGKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR 131 (132)
T ss_pred cCCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence 34479999974 678899999998 9999999999999999986 89999999999875
No 159
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.16 E-value=0.00064 Score=56.87 Aligned_cols=57 Identities=18% Similarity=0.333 Sum_probs=49.8
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.+.++.++|.+ ++..+++++++. ++++.|.+.+...+||++++ ++++|+|+.+|+++
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence 45678899974 678899999998 99999999999999999875 78999999999875
No 160
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.15 E-value=0.00064 Score=56.66 Aligned_cols=55 Identities=31% Similarity=0.536 Sum_probs=48.4
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 206 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
..+.++|.+ .+.++++++++. ++++.|.+.+..++||++++ ++++|+++.+|+++
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence 468888974 677899999998 99999999999999999865 79999999999874
No 161
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.14 E-value=0.00055 Score=57.49 Aligned_cols=55 Identities=24% Similarity=0.374 Sum_probs=48.7
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 206 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
..+.++|. .++..+++++++. ++++.|.+++..++||++++ ++++|+++.+|+..
T Consensus 56 ~~v~~~~~--~~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMR--RDFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhc--CCCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence 46889996 3678899999998 99999999999999999865 79999999999864
No 162
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.12 E-value=0.00059 Score=57.33 Aligned_cols=56 Identities=21% Similarity=0.413 Sum_probs=49.4
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.+.++.++|.+ .+.++++++++. ++++.|.+.+...+||++ + ++++|+|+.+|+++
T Consensus 54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence 45678899974 677899999998 999999999999999998 4 79999999999875
No 163
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.11 E-value=0.0005 Score=58.14 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=46.8
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.+.+++++|.+ .+.++++++++. ++++.|.+.+ .+||++++ ++++|+++.+|+++
T Consensus 61 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~--~~~Vv~~~-~~~~Gvit~~dil~ 115 (116)
T cd04643 61 VDLKVIDVMNT--DVPVIIDDADIE-EILHLLIDQP--FLPVVDDD-GIFIGIITRREILK 115 (116)
T ss_pred hCCcHHHHhcC--CCceecCCCCHH-HHHHHHhcCC--ceeEEeCC-CeEEEEEEHHHhhc
Confidence 46679999975 577889999998 9999998754 59999865 79999999999875
No 164
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.11 E-value=0.00057 Score=58.21 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=50.9
Q ss_pred cCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 202 ~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.....++.++|.+ .+.+++.++++. ++++.|.+.+++.+||+++ ++++|+++.+|+++
T Consensus 63 ~~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~ 120 (121)
T cd04584 63 LLLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR 120 (121)
T ss_pred hhcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence 3456779999975 678899999998 9999999999999999975 78999999999875
No 165
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.09 E-value=0.00068 Score=56.22 Aligned_cols=55 Identities=20% Similarity=0.345 Sum_probs=48.6
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 205 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
+.++.++|.+ ++.++++++++. ++++.|.+++..++||+++ ++++|+|+.+|++.
T Consensus 50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~~ 104 (105)
T cd04599 50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIAL 104 (105)
T ss_pred cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhcc
Confidence 4568899975 678899999998 9999999999999999985 79999999999873
No 166
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.07 E-value=0.0011 Score=46.23 Aligned_cols=46 Identities=20% Similarity=0.481 Sum_probs=40.4
Q ss_pred EEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcc
Q 011545 218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (483)
Q Consensus 218 VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~ 265 (483)
+.++++++++. ++++.|.+.++..+||++++ ++++|+++.+++.+.
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHh
Confidence 35678999998 99999999999999999875 789999999998753
No 167
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.06 E-value=0.00087 Score=55.86 Aligned_cols=45 Identities=20% Similarity=0.403 Sum_probs=41.5
Q ss_pred EEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 218 VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
+.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|+++
T Consensus 51 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~~-~~~~Giit~~di~~ 95 (96)
T cd04614 51 VVTATKRTTVS-ECAQKMKRNRIEQIPIINGN-DKLIGLLRDHDLLK 95 (96)
T ss_pred cEEecCCCCHH-HHHHHHHHhCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 67889999998 99999999999999999875 79999999999975
No 168
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.05 E-value=0.00084 Score=56.47 Aligned_cols=56 Identities=18% Similarity=0.437 Sum_probs=48.8
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.+.+++++|.+ ++..+++++++. ++++.|.+++...+||+++ ++++|+|+.+|+++
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence 45678999974 677889999998 9999999999999999986 38999999999874
No 169
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.03 E-value=0.12 Score=55.06 Aligned_cols=90 Identities=10% Similarity=0.060 Sum_probs=67.7
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccc---cc-chhhhh---
Q 011545 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AV-PLRKMI--- 277 (483)
Q Consensus 205 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~---~~-~V~dIM--- 277 (483)
..+++++|. ++.++++++++. ++++.|++++....+|+|+. |.++|+||..|++.....+ +. .-.+.+
T Consensus 254 ~~~l~~~~~---~~~~Vpe~~~l~-~ll~~m~~~~~~~aiVvDE~-G~~~GiVT~eDileeivgei~de~d~~~~~i~~~ 328 (408)
T TIGR03520 254 NFDWQSLLR---EPYFVPENKKLD-DLLRDFQEKKNHLAIVVDEY-GGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKI 328 (408)
T ss_pred CCCHHHHcC---CCeEeCCCCcHH-HHHHHHHhcCceEEEEEcCC-CCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEe
Confidence 345788886 467899999999 99999999999999999976 8899999999998764211 11 111111
Q ss_pred ccCCcEecCCCCHHHHHHHhHh
Q 011545 278 IRRIPRVSEDMPLYDILNEFQK 299 (483)
Q Consensus 278 ~r~v~~V~~~~~l~daL~~m~~ 299 (483)
......|+..+++.++.+.|.-
T Consensus 329 ~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 329 DDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred CCCeEEEEeccCHHHHHHHhCC
Confidence 1234568889999999998843
No 170
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.03 E-value=0.002 Score=57.52 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=28.7
Q ss_pred CCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 280 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 280 ~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
.+.++++++++.++++.|.+++.+.+||+|+
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~ 32 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS 32 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC
Confidence 4678999999999999999999999999997
No 171
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.00 E-value=0.0008 Score=57.60 Aligned_cols=55 Identities=25% Similarity=0.423 Sum_probs=48.6
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 206 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.+++++|. .++..+++++++. ++++.|.+++..++||++++ ++++|+++.+|+++
T Consensus 67 ~~~~~~~~--~~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMT--RDPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhc--CCCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence 45888886 3678899999998 99999999999999999865 79999999999875
No 172
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.98 E-value=0.00096 Score=56.01 Aligned_cols=55 Identities=24% Similarity=0.446 Sum_probs=48.7
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 205 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
+.++.++|.. ++.++++++++. ++++.|.+++.+++||+++ ++++|+++.+|+++
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 3568899964 678899999999 9999999999999999986 78999999999874
No 173
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.98 E-value=0.0011 Score=57.36 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=44.8
Q ss_pred cccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 210 DAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 210 dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
+.|. .++.++++++++. ++++.|.+++..++||++++ ++++|+|+..|+++
T Consensus 75 ~~~~--~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKS--RPLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS 125 (126)
T ss_pred cccc--CCCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence 4554 3678899999999 99999999999999999876 89999999999975
No 174
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.95 E-value=0.0016 Score=54.71 Aligned_cols=56 Identities=14% Similarity=0.297 Sum_probs=48.7
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 205 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
+.+++++|.+ ++.+++.++++. ++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence 3468888874 678899999998 89999999999999999876 88999999999874
No 175
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.94 E-value=0.0011 Score=57.54 Aligned_cols=58 Identities=19% Similarity=0.369 Sum_probs=49.4
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccC-CCCcEEEEEEchhhhc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSG-NPTNIIGLILVKNLLS 264 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~-d~d~iVGIVs~kDLl~ 264 (483)
.+.+++++|++ +++++++++++. ++++.|.+.++..+||+++ +.++++|+|+.+|+++
T Consensus 69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 45678999974 678899999998 9999999999999999853 3478999999999875
No 176
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.92 E-value=0.002 Score=53.98 Aligned_cols=54 Identities=19% Similarity=0.323 Sum_probs=47.2
Q ss_pred ccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 207 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.+.++|.+ ++.++++++++. ++++.|.+++...+||++++ ++++|+|+.+|+++
T Consensus 56 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence 47788864 677899999998 99999999999999999875 89999999999864
No 177
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=96.89 E-value=0.0014 Score=54.86 Aligned_cols=55 Identities=24% Similarity=0.365 Sum_probs=48.3
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 206 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.++.++|. ..+..++++.++. ++++.|.+.+...+||++++ ++++|+|+.+|+++
T Consensus 55 ~~v~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMT--KDVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhc--CCceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence 56888886 3677899999998 99999999999999999875 79999999999874
No 178
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.86 E-value=0.0026 Score=68.20 Aligned_cols=41 Identities=7% Similarity=0.025 Sum_probs=37.8
Q ss_pred ccchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 270 ~~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
..+++++|.+++.++++++++.++++.|.+++.+.+||+|+
T Consensus 334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~ 374 (454)
T TIGR01137 334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE 374 (454)
T ss_pred cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence 35789999899999999999999999999999999999987
No 179
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=96.85 E-value=0.0042 Score=54.26 Aligned_cols=32 Identities=6% Similarity=-0.002 Sum_probs=29.7
Q ss_pred cCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 279 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 279 r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
+++.++++++++.++++.|++++...+||+|+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~ 33 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE 33 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence 56788999999999999999999999999987
No 180
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.85 E-value=0.0012 Score=55.36 Aligned_cols=54 Identities=15% Similarity=0.203 Sum_probs=46.0
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 206 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
..+.++|. ++.++++++++. ++++.|.+++.+.+||++++ ++++|+|+.+|++.
T Consensus 57 ~~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 110 (111)
T cd04590 57 LDLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDEY-GGTAGLVTLEDILE 110 (111)
T ss_pred CCHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEECC-CCEEEEeEHHHhhc
Confidence 34666664 457889999998 99999999999999999875 78999999999874
No 181
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.78 E-value=0.0016 Score=70.63 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=62.6
Q ss_pred cCCCCCHHHHHHHHHHhc---CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchh
Q 011545 185 KGGDLTHDETTIIAGALE---LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKN 261 (483)
Q Consensus 185 e~G~L~~eE~~~I~~vl~---l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kD 261 (483)
..|.++ ++++..+++. -...+|+++|| .++++++.++-+- ||+-.|.++++.++||+++ |+++|+|+..|
T Consensus 192 ~~GIvT--~~dl~~~v~~~g~~~~~~V~evmT--~p~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~~d 264 (610)
T COG2905 192 LLGIVT--RKDLRSRVIADGRSKTQKVSEVMT--SPVISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTLTD 264 (610)
T ss_pred ccceee--hHHHHHHHHhcCCCcccchhhhhc--cCceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeHHH
Confidence 455554 3556666665 34568999999 4899999999998 9999999999999999986 89999999999
Q ss_pred hhcccc
Q 011545 262 LLSVDY 267 (483)
Q Consensus 262 Ll~~~~ 267 (483)
|++...
T Consensus 265 Il~l~s 270 (610)
T COG2905 265 ILRLFS 270 (610)
T ss_pred HHHhhC
Confidence 997643
No 182
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.72 E-value=0.0047 Score=63.24 Aligned_cols=105 Identities=17% Similarity=0.215 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccccccc
Q 011545 193 ETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVP 272 (483)
Q Consensus 193 E~~~I~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~~~~ 272 (483)
-++.++++-...=.++++||.+ .+......+......+...+.+.+.+.+.+++. .++.+|+|+..++...
T Consensus 261 V~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~-~~~~~g~v~~~~~~~~------- 331 (386)
T COG4175 261 VRDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVDR-GNKFVGVVSIDSLVKA------- 331 (386)
T ss_pred HHHHHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHhc-cCceeeEEeccchhcc-------
Confidence 3566777766777789999985 332222222222115778888888777777774 3679999999887654
Q ss_pred hhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 273 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 273 V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
.+..++..|+.++++.+.+....+...+++ |+|+
T Consensus 332 ---~~~~~~~~v~~d~~~~~~~~~~~~~~~p~a-Vvde 365 (386)
T COG4175 332 ---ALIDDVLTVDADTPLSEILARIRQAPCPVA-VVDE 365 (386)
T ss_pred ---cccccccccCccchHHHHHHHHhcCCCcee-EEcC
Confidence 346778889999999999999999887766 6677
No 183
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.71 E-value=0.002 Score=54.79 Aligned_cols=57 Identities=18% Similarity=0.266 Sum_probs=47.3
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCc---ccccccCCCCcEEEEEEchhhhc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHS---RVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~s---rlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.+.+++++|.+ .+.++++++++. ++++.|.+++.. ..||++++ ++++|+|+.+|+++
T Consensus 59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~~-~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTEE-GRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEeeC-CeEEEEEEHHHHhc
Confidence 45679999975 678899999998 999999988753 45677765 89999999999875
No 184
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.70 E-value=0.0022 Score=54.30 Aligned_cols=49 Identities=20% Similarity=0.396 Sum_probs=43.6
Q ss_pred ccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 211 AMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 211 IMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
+|.+ ++.++++++++. ++++.|.+++...+||+++ ++++|+|+.+|+++
T Consensus 56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVDE--GRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhhhc
Confidence 7864 677899999999 9999999999999999953 79999999999875
No 185
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.67 E-value=0.0055 Score=64.74 Aligned_cols=97 Identities=12% Similarity=0.096 Sum_probs=63.7
Q ss_pred HHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc-cccchhhh
Q 011545 198 AGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-DAVPLRKM 276 (483)
Q Consensus 198 ~~vl~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~-~~~~V~dI 276 (483)
..+-...=.+++++|.|...+ ...+.+ . ++ .+.+.+.+.|++. |+++..+....... ....+.+
T Consensus 266 ~~~~~~~~l~a~~~m~~~~~~--~~~~~~-~--~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~- 330 (382)
T TIGR03415 266 AHTNPLNVLTARSLMRPLTDL--EHVDGG-W--CV---SDRRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEVES- 330 (382)
T ss_pred cccCcccceeHHHHhcccccc--cccCcc-h--hh---hhcccceeEeecc------ceecccchHhHhhcccccchhh-
Confidence 333334556889999753332 223333 2 33 2378888888864 88887776543221 2235666
Q ss_pred hccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 277 IIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 277 M~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
+.+...+|++++++.+++..+.+.... ++|+|+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~ 363 (382)
T TIGR03415 331 LEAAPTVINPDTLMRDVLAARHRTGGA-ILLVEN 363 (382)
T ss_pred hcccCcccCCCCcHHHHHHHHhcCCCC-eEEeeC
Confidence 477888999999999999998887765 556676
No 186
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.61 E-value=0.0043 Score=61.52 Aligned_cols=40 Identities=18% Similarity=0.332 Sum_probs=36.8
Q ss_pred cchhhhhccC-CcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 271 VPLRKMIIRR-IPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 271 ~~V~dIM~r~-v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
.+++++|.++ ++++++++++.++++.|.+.+...++|+|+
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~ 195 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE 195 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC
Confidence 4788999888 899999999999999999999999999997
No 187
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=96.51 E-value=0.0053 Score=68.04 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=38.0
Q ss_pred ccchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 270 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 270 ~~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
..+++|+|.+++.++++++++.++++.|.+++.+.+||+|+
T Consensus 446 ~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~ 486 (574)
T PRK01862 446 TTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD 486 (574)
T ss_pred hCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC
Confidence 45899999888999999999999999999999999999998
No 188
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.42 E-value=0.0053 Score=54.81 Aligned_cols=56 Identities=20% Similarity=0.423 Sum_probs=49.5
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
...++.++|.+ .+.+++.++++. ++++.|.+.+++++||+++ ++++|+|+.+|++.
T Consensus 87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~ 142 (143)
T cd04634 87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE 142 (143)
T ss_pred hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 46678999975 678899999998 9999999999999999975 78999999999874
No 189
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.36 E-value=0.004 Score=51.77 Aligned_cols=54 Identities=19% Similarity=0.280 Sum_probs=43.9
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 205 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
+.++.++|.+ ++.++++++++. ++.+.|.+ . ..+||++++ ++++|+|+.+|+++
T Consensus 56 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~-~-~~~~vv~~~-~~~~Gvvt~~di~~ 109 (110)
T cd04609 56 SLPVREVMGE--PLPTVDPDAPIE-ELSELLDR-G-NVAVVVDEG-GKFVGIITRADLLK 109 (110)
T ss_pred CcCHHHHhcC--CCceeCCCCcHH-HHHHHHHh-C-CceeEEecC-CeEEEEEeHHHhhc
Confidence 3568889964 577899999998 89988888 3 347888765 89999999999875
No 190
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.35 E-value=0.0047 Score=62.91 Aligned_cols=85 Identities=13% Similarity=0.170 Sum_probs=65.4
Q ss_pred ccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccc---cc------chhhhh
Q 011545 207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AV------PLRKMI 277 (483)
Q Consensus 207 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~---~~------~V~dIM 277 (483)
+++++|.| ++++++++++. ++++.|++.+...+||+|+. |.++|+|+..|++.....+ .. .+..+
T Consensus 134 ~l~~l~r~---~~~V~e~~~l~-~~L~~m~~~~~~~a~VvDe~-G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~- 207 (292)
T PRK15094 134 SMDKVLRQ---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQL- 207 (292)
T ss_pred CHHHHcCC---CcCcCCCCcHH-HHHHHHHhcCCEEEEEEeCC-CCEEEEeEHHHHHHHHhCCCccccccccccccEEe-
Confidence 46788864 44799999999 99999999999999999875 7899999999998764321 11 12211
Q ss_pred ccCCcEecCCCCHHHHHHHh
Q 011545 278 IRRIPRVSEDMPLYDILNEF 297 (483)
Q Consensus 278 ~r~v~~V~~~~~l~daL~~m 297 (483)
......|+..+++.++.+.+
T Consensus 208 ~~~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 208 SRHTWTVRALASIEDFNEAF 227 (292)
T ss_pred CCCeEEEEeccCHHHHHHHh
Confidence 22346799999999999887
No 191
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.33 E-value=0.0042 Score=67.01 Aligned_cols=60 Identities=20% Similarity=0.381 Sum_probs=53.4
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 266 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~ 266 (483)
.+.+++++|++ .+++++++++++. ++++.|.+++...+||+|++ ++++|+|+.+|+++..
T Consensus 141 ~~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 141 KGKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRR 200 (450)
T ss_pred CCCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhcc
Confidence 35689999984 4788999999999 99999999999999999976 8999999999999764
No 192
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.32 E-value=0.0086 Score=49.09 Aligned_cols=53 Identities=21% Similarity=0.464 Sum_probs=46.7
Q ss_pred cccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 208 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 208 V~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
+.++|.. ++.+++.+.++. ++++.|.+.+...+||++++ ++++|+++.+|+++
T Consensus 60 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTR--DVVTVSPDTSLE-EAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcC--CceecCCCcCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence 5677763 677889999998 99999999999999999876 89999999999875
No 193
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.30 E-value=0.005 Score=51.36 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=45.9
Q ss_pred ccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 207 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 207 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
.+.++|.. .+.+++.++++. ++++.|.+.+...+||+++ ++++|+++.+|++.
T Consensus 53 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 46777864 567789999998 9999999999999999984 68999999999874
No 194
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=95.36 E-value=0.015 Score=62.55 Aligned_cols=61 Identities=20% Similarity=0.289 Sum_probs=54.7
Q ss_pred cCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccc
Q 011545 202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 266 (483)
Q Consensus 202 ~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~ 266 (483)
.-++..++++|.+ +++++.+++..+ ++.+.+.+++...+||+|++ ++++|+|+..|++...
T Consensus 192 a~~~~~i~~im~~--~~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi 252 (451)
T COG2239 192 AEPDELLKDLMED--DVVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVI 252 (451)
T ss_pred CCcHhHHHHHhcc--cceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHH
Confidence 4567889999986 588999999998 99999999999999999986 8999999999998654
No 195
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=94.34 E-value=0.037 Score=57.22 Aligned_cols=60 Identities=17% Similarity=0.314 Sum_probs=53.3
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccc
Q 011545 203 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 266 (483)
Q Consensus 203 l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~ 266 (483)
.++.++..+|+. ..+++.+.+|+. .+.+.|.-.++.-+||++++ .+++|+|+.+|+++..
T Consensus 246 ~~~t~ieKVMtk--np~tv~~~tsVA-svaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~l 305 (432)
T COG4109 246 KPSTTIEKVMTK--NPITVRAKTSVA-SVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKSL 305 (432)
T ss_pred CCCccHHHHhcc--CCeeecccchHH-HHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHHH
Confidence 466788999994 668899999999 89999999999999999986 7899999999998764
No 196
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=93.38 E-value=0.12 Score=54.33 Aligned_cols=57 Identities=19% Similarity=0.464 Sum_probs=49.5
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccc
Q 011545 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY 267 (483)
Q Consensus 206 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~ 267 (483)
..+.+.|.+ .+.++++++++. +++..|.++++. +||+|++ ++++|+|+..+++....
T Consensus 302 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 302 QGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDALY 358 (363)
T ss_pred Cchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence 468888864 667899999999 999999999999 9999876 89999999999987643
No 197
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=93.12 E-value=0.089 Score=55.40 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=53.1
Q ss_pred cCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcc
Q 011545 202 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (483)
Q Consensus 202 ~l~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~ 265 (483)
+=....+.++|+++. ++.+.+.+++ ++-+.+.++.-.++||++++ |++|-+|+..||.+.
T Consensus 167 ~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 167 EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMKN 226 (503)
T ss_pred hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-Cceeeeeehhhhhhh
Confidence 445677899999865 7889999999 89999999999999999976 999999999999865
No 198
>PRK11573 hypothetical protein; Provisional
Probab=91.76 E-value=0.36 Score=51.67 Aligned_cols=84 Identities=14% Similarity=0.107 Sum_probs=61.6
Q ss_pred ccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccc-----c----cchhhhhcc
Q 011545 209 KDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----A----VPLRKMIIR 279 (483)
Q Consensus 209 ~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~-----~----~~V~dIM~r 279 (483)
.++|. ++..|+++.++. ++++.|++++..-.-|+|+. |...|+||..|++...-.+ + ..+..+ ..
T Consensus 258 ~~~~r---~~~~Vpe~~~l~-~lL~~~~~~~~~~AiVvDEy-G~~~GiVTleDilEeivGei~de~d~~~~~~i~~~-~~ 331 (413)
T PRK11573 258 LRAAD---EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQ-ND 331 (413)
T ss_pred Hhhcc---CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEecC-CCeEEEeeHHHHHHHHhCCCCcccCcccccceEEe-cC
Confidence 35553 567899999999 99999999988888888876 8899999999998653211 1 112111 22
Q ss_pred CCcEecCCCCHHHHHHHhH
Q 011545 280 RIPRVSEDMPLYDILNEFQ 298 (483)
Q Consensus 280 ~v~~V~~~~~l~daL~~m~ 298 (483)
....|+..+++.++-+.+.
T Consensus 332 ~~~~v~G~~~l~d~~~~l~ 350 (413)
T PRK11573 332 GSVIIDGTANVREINKAFN 350 (413)
T ss_pred CEEEEEeeeEHHHHHHHhC
Confidence 3456889999999988873
No 199
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=91.28 E-value=0.28 Score=52.32 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=49.2
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc
Q 011545 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR 268 (483)
Q Consensus 205 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~ 268 (483)
+..+.++|.+ ++.++++++++. +++..+.+..+. +||+|++ ++++|+|+..++++....
T Consensus 336 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 336 QQGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRALDR 394 (400)
T ss_pred CCchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHHHh
Confidence 4467888864 567899999998 999999987766 9999876 999999999999877543
No 200
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=87.25 E-value=1.4 Score=47.38 Aligned_cols=40 Identities=10% Similarity=0.164 Sum_probs=34.9
Q ss_pred cchhhhhc--cCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 271 VPLRKMII--RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 271 ~~V~dIM~--r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
.+++++|+ .++.+++.+.++.++.+.+.+++..+.||.++
T Consensus 206 ~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~ 247 (429)
T COG1253 206 RTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDG 247 (429)
T ss_pred cEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcC
Confidence 47888885 35678999999999999999999999999985
No 201
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=85.02 E-value=1.9 Score=43.51 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=54.4
Q ss_pred EEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcccccc-----------------ccchhhhhccC
Q 011545 218 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----------------AVPLRKMIIRR 280 (483)
Q Consensus 218 VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~~-----------------~~~V~dIM~r~ 280 (483)
++.|.-| ++ ||+++- +|+.|.++ |+++=+=+..+++..+.++ ...+.+.|...
T Consensus 189 ivfVTHD--id-EA~kLa-----dri~vm~~--G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~ 258 (309)
T COG1125 189 IVFVTHD--ID-EALKLA-----DRIAVMDA--GEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG 258 (309)
T ss_pred EEEEecC--HH-HHHhhh-----ceEEEecC--CeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence 4445444 46 677543 56788875 7899888888887654332 12344444332
Q ss_pred C----cEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 281 I----PRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 281 v----~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
. -.++......+++..+...+...+||+|+
T Consensus 259 ~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~ 292 (309)
T COG1125 259 EPADGEPLLEGFVDRDALSDFLARGRSVLPVVDE 292 (309)
T ss_pred ccccCCccccchhhHHHHHHHHhcCCceeEEECC
Confidence 2 12555566677899999999999999998
No 202
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=74.64 E-value=4.4 Score=42.75 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=46.0
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~ 265 (483)
++.+-.++|.--.+++.|+.++++. +-+..+++++-.--.|+|+- |.+.|+|+..|++.-
T Consensus 263 ~~~~k~d~~~~a~epyFVPe~Tpl~-~QL~~F~~~k~hialVVDEY-G~i~GLVTLEDIlEE 322 (423)
T COG4536 263 NEFTKEDILRAADEPYFVPEGTPLS-DQLVAFQRNKKHIALVVDEY-GDIQGLVTLEDILEE 322 (423)
T ss_pred CcccHhHHHHHhcCCeecCCCCcHH-HHHHHHHHhcceEEEEEecc-CcEEeeeeHHHHHHH
Confidence 3345556665556788999999999 78888887665555677775 899999999999854
No 203
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=71.81 E-value=3.4 Score=46.05 Aligned_cols=53 Identities=15% Similarity=0.325 Sum_probs=45.7
Q ss_pred ccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcc
Q 011545 209 KDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (483)
Q Consensus 209 ~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~ 265 (483)
.-+|.| ..+++++++++. .+..+++.-|..++.|+... .+++|+++.+|+.+.
T Consensus 693 ~p~~n~--sPytV~~~mSl~-k~~~lFR~lGLRhLlVv~~~-~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 693 HPFMNP--SPYTVPETMSLA-KAFILFRQLGLRHLLVVPKT-NRVVGILTRKDLARY 745 (762)
T ss_pred ccccCC--CCcccCcccchH-HHHHHHHHhcceeEEEecCC-CceeEEEehhhhhhH
Confidence 445665 557899999998 99999999999999999865 788999999999864
No 204
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=65.62 E-value=1.1e+02 Score=28.01 Aligned_cols=16 Identities=19% Similarity=0.605 Sum_probs=6.9
Q ss_pred HhhhhHHHHHHHHHhh
Q 011545 143 LFFPISYPISKILDLM 158 (483)
Q Consensus 143 l~~Plv~~l~~i~~~l 158 (483)
+++.+.+|+.+++.++
T Consensus 128 ~~~~l~~P~~~~l~~i 143 (183)
T PF01595_consen 128 VLMILLYPLVWLLSFI 143 (183)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 205
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=64.98 E-value=5.6 Score=42.19 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=43.0
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccc
Q 011545 204 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 266 (483)
Q Consensus 204 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~ 266 (483)
.+.++.+ +. +++.++++++++. +++..+.+.++. +||+++ |+++|+|+..+++...
T Consensus 324 ~~~~~~~-~~--~~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~--~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 324 AEQEVES-LE--AAPTVINPDTLMR-DVLAARHRTGGA-ILLVEN--GRIVGVIGDDNIYHAL 379 (382)
T ss_pred cccchhh-hc--ccCcccCCCCcHH-HHHHHHhcCCCC-eEEeeC--CeEEEEEeHHHHHHHH
Confidence 3344555 32 4677899999999 999988887655 777764 8999999999998654
No 206
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=64.01 E-value=18 Score=41.46 Aligned_cols=40 Identities=8% Similarity=0.208 Sum_probs=36.9
Q ss_pred cchhhhhccCCcEecCCCCHHHHHHHhHhcCCcEEEEEec
Q 011545 271 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 310 (483)
Q Consensus 271 ~~V~dIM~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDe 310 (483)
..|+++|.+++.++..+++..|+-+.++....+..|+||.
T Consensus 588 v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s 627 (931)
T KOG0476|consen 588 VKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVES 627 (931)
T ss_pred EEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccC
Confidence 5689999999999999999999998888877999999997
No 207
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=61.75 E-value=6.6 Score=44.78 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=47.8
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCC-CcEEEEEEchhhhcc
Q 011545 205 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP-TNIIGLILVKNLLSV 265 (483)
Q Consensus 205 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~-d~iVGIVs~kDLl~~ 265 (483)
.+.|.++|+ ++|..|..+.|.. |..+.+.......+|++++.. .-++|.|..+.|...
T Consensus 587 ~v~VE~iMV--~dv~yI~k~~Ty~-elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~l 645 (931)
T KOG0476|consen 587 TVKVEHIMV--TDVKYITKDTTYR-ELREALQTTTLRSFPLVESKESMILLGSVARRYLTAL 645 (931)
T ss_pred EEEeeeecc--ccceeeeccCcHH-HHHHHHHhCccceeccccCcccceeeehhHHHHHHHH
Confidence 577999999 5999999999998 887777766699999998542 348999999998754
No 208
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=54.89 E-value=12 Score=38.06 Aligned_cols=59 Identities=22% Similarity=0.222 Sum_probs=41.7
Q ss_pred cccccccccccCccE--EEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhc
Q 011545 204 TEKTAKDAMTPISKA--FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 264 (483)
Q Consensus 204 ~~~tV~dIMtPr~~V--vtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~ 264 (483)
...++.+.|.+.... -.+.....-. +++..+...+.+.+||+|++ ++++|.|+..+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ls~~~~~~~~~~~Vvd~~-g~~~G~vt~~~l~~ 307 (309)
T COG1125 247 SLVSVADAVRRGEPADGEPLLEGFVDR-DALSDFLARGRSVLPVVDED-GRPLGTVTRADLLD 307 (309)
T ss_pred chhhHHHhhcccccccCCccccchhhH-HHHHHHHhcCCceeEEECCC-CcEeeEEEHHHHhh
Confidence 556677777653211 1222333444 67788888999999999987 99999999999874
No 209
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=52.18 E-value=37 Score=33.96 Aligned_cols=88 Identities=15% Similarity=0.174 Sum_probs=64.1
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccccc---------cccchhhh
Q 011545 206 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------DAVPLRKM 276 (483)
Q Consensus 206 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~~~---------~~~~V~dI 276 (483)
-.++++.. ..+.|++.-.+. ..++.++.+++.-..|+|+- |-+-|+|+..|++...-. +...++.+
T Consensus 133 F~i~~lLR---Pav~VPESKrvd-~lLkeFR~~RnHMAIViDEf-GgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~l 207 (293)
T COG4535 133 FDIKELLR---PAVVVPESKRVD-RLLKEFRSQRNHMAIVIDEF-GGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQL 207 (293)
T ss_pred ccHHHhcc---cceecccchhHH-HHHHHHHhhcCceEEEEecc-CCeeeeEEHHHHHHHHhcccccccchhhhhhhHhh
Confidence 34666665 456789999998 78999998887777888875 889999999999875321 12334444
Q ss_pred hccCCcEecCCCCHHHHHHHhHh
Q 011545 277 IIRRIPRVSEDMPLYDILNEFQK 299 (483)
Q Consensus 277 M~r~v~~V~~~~~l~daL~~m~~ 299 (483)
.+..+.|..-+++++-=+.|-.
T Consensus 208 -s~~~~~VrALT~IedFNe~F~t 229 (293)
T COG4535 208 -SRHTWRVRALTEIEDFNEAFGT 229 (293)
T ss_pred -cCCceEEEecccHHHHHHHhcC
Confidence 5566778888888877766643
No 210
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=51.85 E-value=16 Score=41.04 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=44.7
Q ss_pred cccccccCccEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccc
Q 011545 208 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 266 (483)
Q Consensus 208 V~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~ 266 (483)
.+++|.+ .++++...++.+ -+++++++-|.+...|.++ |++.|+|+.||+++..
T Consensus 641 lk~il~~--tp~tv~d~tp~~-~v~~~F~~lg~~~~~v~~~--G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 641 LKDILDM--TPFTVTDLTPME-TVVDLFRKLGLRQILVTKN--GILLGIITKKDCLRHT 694 (696)
T ss_pred ceeeccC--CcccccccCcHH-HHHHHHHhhCceEEEEccC--CeeEeeeehHHHHHhh
Confidence 4677754 557888889998 8999999999999988754 8999999999998753
No 211
>PHA02975 hypothetical protein; Provisional
Probab=42.28 E-value=42 Score=26.94 Aligned_cols=29 Identities=7% Similarity=0.111 Sum_probs=11.6
Q ss_pred CCCCCcccchHHHHHHHHHHHHHHHHHHH
Q 011545 3 TDSDVACCGTMFFVFVLGIIALVCFAGLM 31 (483)
Q Consensus 3 ~~~~~~~~~~~~w~~lllil~Ll~lsafF 31 (483)
+|.+.+.+....|..++++++.+++.++|
T Consensus 32 tdk~~~~~~~~~~~~~ii~i~~v~~~~~~ 60 (69)
T PHA02975 32 TGKKEPKKKSSLSIILIIFIIFITCIAVF 60 (69)
T ss_pred cCCCCCCcCCchHHHHHHHHHHHHHHHHH
Confidence 56655533333333223333333444443
No 212
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=34.41 E-value=33 Score=35.93 Aligned_cols=47 Identities=23% Similarity=0.339 Sum_probs=37.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCcccccccCCCCcEEEEEEchhhhccc
Q 011545 217 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 266 (483)
Q Consensus 217 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~~ 266 (483)
++.+++.++++. +.+..+.+.+ .-+||+|++ ++++|+++...++.+.
T Consensus 336 ~~~~v~~d~~~~-~~~~~~~~~~-~p~aVvde~-~r~vG~i~~~~vl~aL 382 (386)
T COG4175 336 DVLTVDADTPLS-EILARIRQAP-CPVAVVDED-GRYVGIISRGELLEAL 382 (386)
T ss_pred cccccCccchHH-HHHHHHhcCC-CceeEEcCC-CcEEEEecHHHHHHHH
Confidence 677889999998 7777766554 557899876 9999999999988664
No 213
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=32.48 E-value=45 Score=36.98 Aligned_cols=34 Identities=18% Similarity=0.450 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCcccccccCCCCcEEEEEEchhhhcc
Q 011545 230 DTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 265 (483)
Q Consensus 230 eal~~m~~~~~srlPVvd~d~d~iVGIVs~kDLl~~ 265 (483)
.+.+.+.+.|-+-++|+++ +++.|+|++||+++-
T Consensus 417 ~~~~~vs~~GGTPL~V~~~--~~~~GVI~LkDivK~ 450 (681)
T COG2216 417 AAVDEVSRLGGTPLVVVEN--GRILGVIYLKDIVKP 450 (681)
T ss_pred HHHHHHHhcCCCceEEEEC--CEEEEEEEehhhcch
Confidence 4556666777888899975 799999999999864
No 214
>PF03563 Bunya_G2: Bunyavirus glycoprotein G2; InterPro: IPR005168 Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This entry represents the polyprotein region forming the G2 glycoprotein, which interacts with the IPR005167 from INTERPRO G1 glycoprotein [].
Probab=31.90 E-value=1.2e+02 Score=30.82 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhh
Q 011545 135 PIVRVLLCLFFPISYPISKILDLML 159 (483)
Q Consensus 135 ~~l~~l~~l~~Plv~~l~~i~~~ll 159 (483)
++.++++-+|+|++|+-.|+.++-.
T Consensus 210 Yi~YlliPiF~P~~~~Yg~~ynk~c 234 (285)
T PF03563_consen 210 YICYLLIPIFYPIAYLYGWLYNKSC 234 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667788899999999999988743
No 215
>TIGR00811 sit silicon transporter. Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterized member of the family (Sit1) functions in the energy-dependent uptake of either Silicic acid [Si(OH)4] or Silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms which make their "glass houses" out of silicon.
Probab=25.93 E-value=83 Score=34.28 Aligned_cols=149 Identities=12% Similarity=0.179 Sum_probs=0.0
Q ss_pred cccchHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhhhhHHhHchHH-----hhchhHHH
Q 011545 8 ACCGTMFF------VFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVV-----KNQHLLLC 76 (483)
Q Consensus 8 ~~~~~~~w------~~lllil~Ll~lsafFsg~E~Al~Sl~~~rL~~la~~g~~~~~~~A~~ll~l~-----~~~~~~L~ 76 (483)
|+|+|+.| +.+++.++++..-|+.=|.-.|++++.+..-+ ++|+.. .+++...++ +|-.+++.
T Consensus 245 FnG~T~m~~~V~p~vAV~lff~~m~~vGMlEGmQiAffavakl~~e---ergs~~---f~~Ktc~LlFkGnG~NLpgfmi 318 (545)
T TIGR00811 245 FNGQTTMWEFIPNGVAIVLFILLMSVVGLLEGMQIAFFAVAKIPKA---ERGDHP---FARKTCELLFKGNGRNLPGFMV 318 (545)
T ss_pred HCCCceecCCCCccHHHHHHHHHHHHHHHhhhceeEEEEecCCCHH---HccCCh---hHHHHHHHHhcCCCCCCCceee
Q ss_pred HHHH---------------------HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcchHHHHHhHHHHHHHHHH
Q 011545 77 TLLI---------------------GNSLAMEALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAP 135 (483)
Q Consensus 77 tili---------------------Gn~l~~~~~~~~~~~~~~~~~a~li~t~lilvfGEiiPK~la~~~p~~ia~~~a~ 135 (483)
.=|+ ||++.+. -+..-..+...+...++..++|-|..|-.|..+|..+..--..
T Consensus 319 GRQltVv~~fFvV~~iT~L~i~~G~~~nIfGv-----sD~~Q~ffn~g~~gaviTTIlasitwQ~aASafpiaFlNNp~t 393 (545)
T TIGR00811 319 GRQMTVTLCFFIIARVTTLDIEVGVDDNIFGV-----SDGIQEFFNLGFLGAIITTILASIAWQLVASAFPIAFLSNPIV 393 (545)
T ss_pred cceeEEEEEEEEeeeccccCCCCCCCCccccC-----cHHHHHHHhhccHHHHHHHHHHHHHHHHHHHhCcHHHhcCHHH
Q ss_pred HHHHHHHHhhhh------HHHHHHHHHhhhCCCccccc
Q 011545 136 IVRVLLCLFFPI------SYPISKILDLMLGKGHAVLL 167 (483)
Q Consensus 136 ~l~~l~~l~~Pl------v~~l~~i~~~llg~~~~~~~ 167 (483)
.+.+...++.=. +|++..+..++.|......|
T Consensus 394 y~lL~~aL~LE~TGlchgawvi~~i~k~vaG~q~devy 431 (545)
T TIGR00811 394 YIVLRIVLLIEATGICAGAWFLGMIHKKVAGFQLDEVY 431 (545)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcceeE
No 216
>PF07811 TadE: TadE-like protein; InterPro: IPR012495 The members of this family are similar to a region of the protein product of the bacterial tadE locus (Q9S4A6 from SWISSPROT). In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces []. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria []. All tad loci but TadA have putative transmembrane regions [], and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.
Probab=25.32 E-value=1.8e+02 Score=20.18 Aligned_cols=41 Identities=15% Similarity=0.052 Sum_probs=24.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcC
Q 011545 10 CGTMFFVFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSG 53 (483)
Q Consensus 10 ~~~~~w~~lllil~Ll~lsafFsg~E~Al~Sl~~~rL~~la~~g 53 (483)
|+...+..+++-++++ -+|...+++.....+..++..++++
T Consensus 1 G~~~vEfalv~Pvl~~---~~~~~~~~~~~~~~~~~~~~aa~~a 41 (43)
T PF07811_consen 1 GSATVEFALVLPVLLL---LLFGIVELGRMFYAQQVLQSAAREA 41 (43)
T ss_pred CHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454443333332 3355678888888888888776654
No 217
>PHA02650 hypothetical protein; Provisional
Probab=22.92 E-value=1.3e+02 Score=24.83 Aligned_cols=8 Identities=25% Similarity=0.140 Sum_probs=4.1
Q ss_pred CCCCCccc
Q 011545 3 TDSDVACC 10 (483)
Q Consensus 3 ~~~~~~~~ 10 (483)
+|.+.+.+
T Consensus 32 tD~~~~~~ 39 (81)
T PHA02650 32 SDEDGSKK 39 (81)
T ss_pred cCCCCccc
Confidence 56555533
No 218
>PF03842 Silic_transp: Silicon transporter; InterPro: IPR004693 Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterised member of the family (Sit1) functions in the energy-dependent uptake of either silicic acid [Si(OH)4] or silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms, which make their "glass houses" out of silicon.
Probab=22.82 E-value=1.8e+02 Score=31.45 Aligned_cols=145 Identities=17% Similarity=0.232 Sum_probs=0.0
Q ss_pred cccchHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchhhhhHHhHch-HHhhchhHHHHHHH
Q 011545 8 ACCGTMFF------VFVLGIIALVCFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFP-VVKNQHLLLCTLLI 80 (483)
Q Consensus 8 ~~~~~~~w------~~lllil~Ll~lsafFsg~E~Al~Sl~~~rL~~la~~g~~~~~~~A~~ll~-l~~~~~~~L~tili 80 (483)
++|.++.| +.+++.++++..-|+.=|.-+|++++.+..-++ +|+.. -|++-.. +.+.-.+-|-..+|
T Consensus 246 f~G~Ttmw~gvp~~vsV~lff~~M~vVGmLEgMQIAfFavaKlp~~E---Rg~~~---f~~ktc~llF~gnG~NlpgFmi 319 (512)
T PF03842_consen 246 FNGKTTMWPGVPPGVSVILFFFFMSVVGMLEGMQIAFFAVAKLPKEE---RGTSF---FAKKTCELLFKGNGQNLPGFMI 319 (512)
T ss_pred HCCCceecCCCCcchHHHHHHHHHHHHHHHhhhHhhhhhhhcCCHHH---cCCCh---hhhheeeeeecCCCCcCcccee
Q ss_pred H-------------------------HHHHHH--HHHHHHHhhhhhHHHHHHHHHHHHHHHhhcchHHHHHhHHHHHHHH
Q 011545 81 G-------------------------NSLAME--ALPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATM 133 (483)
Q Consensus 81 G-------------------------n~l~~~--~~~~~~~~~~~~~~a~li~t~lilvfGEiiPK~la~~~p~~ia~~~ 133 (483)
| ||+..+ ....|++..+.+. ++..+++-|.=|-.|..+|..+...
T Consensus 320 GRQltVv~~fF~va~iTsl~i~~G~g~NiFGvsDgaQ~FlN~Gf~gA-------viTTIlaSi~WqlaASafPiafl~n- 391 (512)
T PF03842_consen 320 GRQLTVVACFFLVARITSLNIEPGEGNNIFGVSDGAQAFLNTGFHGA-------VITTILASITWQLAASAFPIAFLNN- 391 (512)
T ss_pred cceeEEEEEEEEEEeecccccccCCCCceeeccHHHHHHHhccchHH-------HHHHHHHHHHHHHHHHhCcHHHhcC-
Q ss_pred HHHHHHHHHHhhhh--------HHHHHHHHHhhhCCCccccc
Q 011545 134 APIVRVLLCLFFPI--------SYPISKILDLMLGKGHAVLL 167 (483)
Q Consensus 134 a~~l~~l~~l~~Pl--------v~~l~~i~~~llg~~~~~~~ 167 (483)
|+.+++.++..-+ .|.+..+-+++.|-.....|
T Consensus 392 -P~tyilL~~aL~LE~tGiC~gAWvla~i~k~iag~q~DevY 432 (512)
T PF03842_consen 392 -PITYILLRVALFLEATGICSGAWVLARIHKKIAGFQYDEVY 432 (512)
T ss_pred -cHHHHHHHHHHHHhhcceehhHHHHHHHHHHHhcCCccceE
No 219
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=21.28 E-value=1.4e+02 Score=21.09 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011545 14 FFVFVLGIIALVCFAGLM 31 (483)
Q Consensus 14 ~w~~lllil~Ll~lsafF 31 (483)
.|..+++.++-+++|..|
T Consensus 18 Y~GLllifvl~vLFssyf 35 (37)
T PF02419_consen 18 YWGLLLIFVLAVLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 566666666667777665
No 220
>CHL00038 psbL photosystem II protein L
Probab=20.94 E-value=1.3e+02 Score=21.33 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011545 14 FFVFVLGIIALVCFAGLM 31 (483)
Q Consensus 14 ~w~~lllil~Ll~lsafF 31 (483)
.|..+++.++.+++|..|
T Consensus 19 y~GLLlifvl~vlfssyf 36 (38)
T CHL00038 19 YWGLLLIFVLAVLFSNYF 36 (38)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 566666656667777665
No 221
>PF15284 PAGK: Phage-encoded virulence factor
Probab=20.90 E-value=1.1e+02 Score=23.99 Aligned_cols=20 Identities=5% Similarity=0.120 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011545 18 VLGIIALVCFAGLMAGLTLG 37 (483)
Q Consensus 18 lllil~Ll~lsafFsg~E~A 37 (483)
+.++++|++.++.||++.+|
T Consensus 7 ifL~l~~~LsA~~FSasamA 26 (61)
T PF15284_consen 7 IFLALVFILSAAGFSASAMA 26 (61)
T ss_pred HHHHHHHHHHHhhhhHHHHH
Confidence 45566777888889999877
Done!