BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011546
(483 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54S83|NDUF7_DICDI NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
OS=Dictyostelium discoideum GN=midA PE=1 SV=1
Length = 484
Score = 313 bits (802), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 181/470 (38%), Positives = 262/470 (55%), Gaps = 45/470 (9%)
Query: 32 FSSSSSSESQIPNSHSVEPLDDNRSEHASTA--------ISIDRSGLYNPPEHSHERKLE 83
F ++S S + N + ++ D EH A +S D+SGL P+ + +
Sbjct: 28 FINNSLSYTTTSNENDIK---DKNEEHDHRAKGKGRELLLSFDKSGLAQFPKQVFKNRKY 84
Query: 84 --SELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMF 141
++ K+L+ I K RG P+S+ +++EVLTNPK G+Y+N+DVFG GDFIT+PEVSQ+F
Sbjct: 85 PITDFEKYLQDITKVRG-PMSIDTFIKEVLTNPKYGYYMNKDVFGKGGDFITAPEVSQLF 143
Query: 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201
GEM+G+W + WE MG+P ++ +VE+GPGRGTLM D+LR FK F +S+ +HLVE SP
Sbjct: 144 GEMIGIWCVATWEAMGKPKKLQIVEMGPGRGTLMKDILRSTKVFKEFYDSISVHLVEASP 203
Query: 202 TLQKLQHHNLKCMDENNANDNVEERTISSL-AGTPVSWHAALEQVPSGFPTIIVAHEFYD 260
+K Q NL + N + +TI G V+W LE+VP+ PT+ +A EF+D
Sbjct: 204 ANKKTQKQNLLYFKDKAI--NFDHKTIGETPNGIKVTWVGKLEEVPTDIPTLFLAQEFFD 261
Query: 261 ALPVH--QFQKTTRGWCEKLV--DIAEDSSF--RFVLSPQPTPATLFLLQRC-KWAADKE 313
ALP+H +F + WCE LV DI E + RFV S PT T + ++ D
Sbjct: 262 ALPIHVFRFSREKNDWCEVLVDEDITEHGEYYLRFVQSKGPTLMTTAVKHLLPEFGLDG- 320
Query: 314 LEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDN 373
+E+ + ++ +A RI GG ALIIDYG + +V SLQAIR H+FVD+ D
Sbjct: 321 ----YQVELGLAGLAISQQIANRIDKSGGAALIIDYGYDKIVKSSLQAIRDHEFVDILDK 376
Query: 374 PGSADLSAYVDFASISHSAEEASERVSVHGPMTQSQFLGSLGINFRVESLLQNC-TEEQA 432
PG+ADLS +VDF +I + + + + GP+ Q FL +GI R+ + + + E+
Sbjct: 377 PGTADLSVWVDFQTIRKTVKLLKNKSTAIGPVDQGIFLKEMGIEHRLAQIGRKLDSNEKF 436
Query: 433 ESLRTGYWSLVGEGEAPFWEGPDEQAPIGMGTRYLAMAIVNKNQGVPVPF 482
E L GY LV P MGT Y + I +KN P+ F
Sbjct: 437 EELVMGYKKLVD--------------PKEMGTNYKVITICDKNI-TPIGF 471
>sp|Q08BY0|NDUF7_DANRE NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
OS=Danio rerio GN=ndufaf7 PE=2 SV=1
Length = 422
Score = 286 bits (731), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 153/351 (43%), Positives = 221/351 (62%), Gaps = 24/351 (6%)
Query: 82 LESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMF 141
+ ++KHL I GPISVAEYM E LTNP G+Y+ D+ GA GDFITSPE+SQ+F
Sbjct: 26 INKSILKHLASKI-IATGPISVAEYMREALTNPVLGYYVKNDMLGAGGDFITSPEISQIF 84
Query: 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFT--ESLHIHLVEC 199
GE++GVW + W G+ + + LVELGPGRG+L +D+LR S+ K + IHLVE
Sbjct: 85 GELLGVWCISEWMAAGKSSALQLVELGPGRGSLTSDILRVFSQLKGVLGETGISIHLVEV 144
Query: 200 SPTLQKLQHHNLKCMDENNA----NDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVA 255
SP L ++Q +C+ N N++ R+ ++ G P+ W+ ++E VP GF +I +A
Sbjct: 145 SPKLSQVQA---ECLTGNQTQTYDNNHTFYRSGTTCTGLPIYWYHSIEDVPRGF-SIFLA 200
Query: 256 HEFYDALPVHQFQKTTRGWCEKLVDIAEDS--SFRFVLSPQPTPATLFLLQRCKWAADKE 313
HEF+DALP+H+FQ+T GW E LVDI ++ RFV+S +PT A+ L+Q+
Sbjct: 201 HEFFDALPIHKFQRTENGWREVLVDIDPENPGKLRFVVSHRPTLASSTLIQKD------- 253
Query: 314 LEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDN 373
E H+EVCA+A + +A RI DGG ALI+DYG +G TD+ + + H+ D+ +
Sbjct: 254 -ESRRHVEVCAEAGVIVQKLASRIAEDGGAALIVDYGHDGTKTDTFRGFKGHQIHDVLEA 312
Query: 374 PGSADLSAYVDFASISHSAEEASERVSVHGPMTQSQFLGSLGINFRVESLL 424
PG ADL+A VDF S+ + A ++V GP+TQ FL ++GI+ R++ LL
Sbjct: 313 PGLADLTADVDF---SYLRKMAGDQVICLGPITQRSFLKNMGIDSRMQVLL 360
>sp|Q9VGR2|NDUF7_DROME NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
homolog OS=Drosophila melanogaster GN=CG17726 PE=1 SV=1
Length = 437
Score = 281 bits (720), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 175/416 (42%), Positives = 235/416 (56%), Gaps = 45/416 (10%)
Query: 72 NPPEHSHERKLESE-----LVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFG 126
PP+ E ++E L K L+ I GPI VAEYM EVLTNP+AG+Y+NRDVFG
Sbjct: 33 EPPKEQPEASSKAESGHGSLAKQLRAKI-LSTGPIPVAEYMREVLTNPQAGYYMNRDVFG 91
Query: 127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFK 186
EGDFITSPE+SQ+FGE+VG+W + W +MG P+ LVELGPGRGTL D+L+ +KFK
Sbjct: 92 REGDFITSPEISQIFGELVGIWLVSEWRKMGSPSPFQLVELGPGRGTLARDVLKVLTKFK 151
Query: 187 NFTESLHIHLVECSPTLQKLQHHNL----KCMDENNANDNVEERTISSLAGTPVSWHAAL 242
E +H+VE SP L K Q + + E+ + +E T +S GT WH L
Sbjct: 152 QDAE-FSMHMVEVSPFLSKAQAQRFCYSHQTLPEDAQLPHYQEGTTAS--GTKAFWHRRL 208
Query: 243 EQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDI-----AEDSSFRFVLSPQPTP 297
E VP GF ++++AHEF+DALPVH+ Q W E L+D+ A+++SFR+VLS TP
Sbjct: 209 EDVPQGF-SLVLAHEFFDALPVHKLQLVDGKWQEVLIDVASSDGAQEASFRYVLSRSQTP 267
Query: 298 ATLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTD 357
+ + + LEH + G +A+RI DGG ALI+DYG G TD
Sbjct: 268 VSSLY----RPLPGETRSCLEH---SLETERQVGLLAERIERDGGIALIMDYGHFGEKTD 320
Query: 358 SLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAEEASERVSVH--GPMTQSQFLGSLG 415
+ +A ++HK D PGSADL+A VDF + H AE R +VH GP+ Q FL +
Sbjct: 321 TFRAFKQHKLHDPLVEPGSADLTADVDFKLVRHIAE---TRGNVHCCGPVEQGLFLQRMQ 377
Query: 416 INFRVESLLQNCTEEQAESLRTGYWSLVGEGEAPFWEGPDEQAPIGMGTRYLAMAI 471
R+E LL + E E +R+GY L P MGTR+ +A+
Sbjct: 378 GEARLEQLLAHALPENQEIIRSGYEMLTD--------------PAQMGTRFKFLAM 419
>sp|Q9CWG8|NDUF7_MOUSE NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Mus
musculus GN=Ndufaf7 PE=2 SV=4
Length = 436
Score = 278 bits (712), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 160/386 (41%), Positives = 232/386 (60%), Gaps = 22/386 (5%)
Query: 65 IDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDV 124
I R Y+ E + +++HL IK GPI+VAEYM+EVLTNP G+Y+++D+
Sbjct: 17 IWRGKCYSSGNEPAESNQVTPMLRHLMYKIK-STGPITVAEYMKEVLTNPAKGYYVHQDM 75
Query: 125 FGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASK 184
G +GDFITSPE+SQ+FGE++GVW + W G+ LVELGPGRGTL AD+LR S+
Sbjct: 76 LGEKGDFITSPEISQIFGELLGVWFVSEWIASGKSPAFQLVELGPGRGTLTADILRVFSQ 135
Query: 185 FKNF--TESLHIHLVECSPTLQKLQHHNL---KCMDENNANDNVEERTISSLAGTPVSWH 239
+ T ++ IHLVE S L ++Q L K E +A V + ++ +G PVSW+
Sbjct: 136 LGSVLKTCAISIHLVEVSQKLSEIQALTLAEEKVPLERDAESLVYMKGVTK-SGIPVSWY 194
Query: 240 AALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSS--FRFVLSPQPTP 297
L+ VP G+ ++ +AHEF+D LPVH+FQKT RGW E VD+ +S RFVL+P TP
Sbjct: 195 RDLKDVPEGY-SLYLAHEFFDVLPVHKFQKTPRGWREVFVDVDPQASDKLRFVLAPCATP 253
Query: 298 ATLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTD 357
A F+ + E+ EH+EVC A + +++RI S GG ALI DYG +G TD
Sbjct: 254 AEAFI---------QRDERREHVEVCPDAGVIIQELSQRIASTGGAALIADYGHDGTKTD 304
Query: 358 SLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAEEASERVSVHGPMTQSQFLGSLGIN 417
+L+ H+ D+ PG+ADL+A VDF+ + A+ +V+ GP+ Q FL ++GI+
Sbjct: 305 TLRGFYGHQLHDVLIAPGTADLTADVDFSYLRRMAQ---GKVASLGPVEQRTFLKNMGID 361
Query: 418 FRVESLLQNCTEEQAESLRTGYWSLV 443
R++ LL E A+ G + ++
Sbjct: 362 VRLKVLLDKAGEPSAKQQLLGGYDML 387
>sp|Q5XI79|NDUF7_RAT NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
OS=Rattus norvegicus GN=Ndufaf7 PE=2 SV=1
Length = 436
Score = 273 bits (698), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 162/390 (41%), Positives = 230/390 (58%), Gaps = 24/390 (6%)
Query: 59 ASTAI-SIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAG 117
A T I SI R ++ E + +++HL IK GPI+VAEYM+EVLTNP G
Sbjct: 10 ARTGIPSIWRRKCFSSGNEPAESNHVTPMLRHLMYKIK-STGPITVAEYMKEVLTNPAKG 68
Query: 118 FYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMAD 177
+Y++ D+ G +GDFITSPE+SQ+FGE++GVW + W G+ LVELGPGRGTL AD
Sbjct: 69 YYVHHDMLGEKGDFITSPEISQIFGELLGVWFVSEWMASGKSTAFQLVELGPGRGTLTAD 128
Query: 178 LLRGASKFKNF--TESLHIHLVECSPTLQKLQHHNL---KCMDENNANDNVEERTISSLA 232
+LR S+ + T + IHLVE S L ++Q L E +A V + ++ +
Sbjct: 129 ILRVFSQLGSVLKTCDISIHLVEVSQKLSEIQALTLTEETVPLERDAESLVYMKGVTK-S 187
Query: 233 GTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDS--SFRFV 290
G P+SW+ L+ VP+G+ + +AHEF+D LPVH+FQKT GW E VDI S RFV
Sbjct: 188 GIPISWYRDLKDVPTGY-SFYLAHEFFDVLPVHKFQKTPHGWREVFVDIDPQSPDKLRFV 246
Query: 291 LSPQPTPATLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYG 350
L+P TPA F+ + E+ EH+EVC A + +++RI S GG ALI DYG
Sbjct: 247 LAPCATPAEAFI---------QRDERREHVEVCPDAGVVIQELSQRIASTGGAALIADYG 297
Query: 351 LNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAEEASERVSVHGPMTQSQF 410
+G TD+L+ +H+ D+ PG+ADL+A VDF+ + A+ RV+ GP+ Q F
Sbjct: 298 HDGTKTDTLRGFYEHQLHDVLTAPGTADLTADVDFSYLRRMAQ---GRVASLGPVEQRTF 354
Query: 411 LGSLGINFRVESLLQNCTEEQ-AESLRTGY 439
L ++GI+ R++ LL + + L GY
Sbjct: 355 LKNMGIDVRLKVLLDKAGDPSLQQQLLRGY 384
>sp|Q5BKM6|NDUF7_XENTR NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
OS=Xenopus tropicalis GN=ndufaf7 PE=2 SV=1
Length = 430
Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 152/351 (43%), Positives = 211/351 (60%), Gaps = 21/351 (5%)
Query: 86 LVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMV 145
L+ HL IK GPI+V+EYM EVLTNP G+Y++ D+ G GDF+TSPE+SQ+FGE++
Sbjct: 43 LLNHLIFKIK-STGPITVSEYMREVLTNPVKGYYMHHDMLGEHGDFVTSPELSQIFGELL 101
Query: 146 GVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES--LHIHLVECSPTL 203
GVW + W G+P + LVELGPGRGTL DLLR S F S + +HLVE SP L
Sbjct: 102 GVWCISEWMSAGKPKSLQLVELGPGRGTLTDDLLRVFSNFGRLLNSCDISVHLVEVSPKL 161
Query: 204 QKLQHHNL--KCMD-ENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYD 260
+Q L K ++ E + N V ++ I+ G PV W+ ++ VP+GF + +AHEF+D
Sbjct: 162 SDIQAQRLTGKAIEVELDKNSPVYKKGITK-TGFPVCWYQDIQDVPTGF-SFYIAHEFFD 219
Query: 261 ALPVHQFQKTTRGWCEKLVDIAED--SSFRFVLSPQPTPATLFLLQRCKWAADKELEKLE 318
ALP+H+ QKT GW E L+DI RFVL P + +Q + E +
Sbjct: 220 ALPIHKLQKTKDGWREILIDIDPGIPDKLRFVLGPNVSLVANTFVQ--------DDEPRD 271
Query: 319 HIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSAD 378
H+EVC A + +A +I S GG ALI DYG G TD+ + R HK D+ NPG+AD
Sbjct: 272 HVEVCPSAAVIIQKLANQINSYGGAALIADYGHMGERTDTFRGFRAHKLHDVLSNPGTAD 331
Query: 379 LSAYVDFASISHSAEEASERVSVHGPMTQSQFLGSLGINFRVESLLQNCTE 429
L+A VDF + EA+ S GP+TQ +FL ++GI+ R++ LL+ ++
Sbjct: 332 LTADVDFNFMRRIVGEAA---SCLGPVTQHEFLKNMGIDIRLKVLLEKSSD 379
>sp|Q7L592|NDUF7_HUMAN NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
OS=Homo sapiens GN=NDUFAF7 PE=1 SV=1
Length = 441
Score = 270 bits (690), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 150/364 (41%), Positives = 218/364 (59%), Gaps = 23/364 (6%)
Query: 84 SELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGE 143
+ +++HL IK GPI+VAEYM+EVLTNP G+Y+ RD+ G +GDFITSPE+SQ+FGE
Sbjct: 41 TPMLRHLMYKIK-STGPITVAEYMKEVLTNPAKGYYVYRDMLGEKGDFITSPEISQIFGE 99
Query: 144 MVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES--LHIHLVECSP 201
++G+W + W G+ LVELGPGRGTL+ D+LR ++ + ++ + +HLVE S
Sbjct: 100 LLGIWFISEWMATGKSTAFQLVELGPGRGTLVGDILRVFTQLGSVLKNCDISVHLVEVSQ 159
Query: 202 TLQKLQHHNL---KCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEF 258
L ++Q L K E NA V + ++ +G P+SW+ L VP G+ + +AHEF
Sbjct: 160 KLSEIQALTLTKEKVPLERNAGSPVYMKGVTK-SGIPISWYRDLHDVPKGY-SFYLAHEF 217
Query: 259 YDALPVHQFQKTTRGWCEKLVDIAEDSS--FRFVLSPQPTPATLFLLQRCKWAADKELEK 316
+D LPVH+FQKT +GW E VDI S RFVL+P TPA F+ + E
Sbjct: 218 FDVLPVHKFQKTPQGWREVFVDIDPQVSDKLRFVLAPSATPAEAFI---------QHDET 268
Query: 317 LEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGS 376
+H+EVC A + +++RI GG AL+ DYG +G TD+ + HK D+ PG+
Sbjct: 269 RDHVEVCPDAGVIIEELSQRIALTGGAALVADYGHDGTKTDTFRGFCDHKLHDVLIAPGT 328
Query: 377 ADLSAYVDFASISHSAEEASERVSVHGPMTQSQFLGSLGINFRVESLLQNCTEEQA-ESL 435
ADL+A VDF+ + A+ +V+ GP+ Q FL ++GI+ R++ LL E + L
Sbjct: 329 ADLTADVDFSYLRRMAQ---GKVASLGPIKQHTFLKNMGIDVRLKVLLDKSNEPSVRQQL 385
Query: 436 RTGY 439
GY
Sbjct: 386 LQGY 389
>sp|Q2KHV5|NDUF7_BOVIN NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Bos
taurus GN=NDUFAF7 PE=2 SV=2
Length = 441
Score = 267 bits (683), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 160/402 (39%), Positives = 232/402 (57%), Gaps = 37/402 (9%)
Query: 79 ERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVS 138
E + +++HL IK GPI+VAEYM+EVLTNP G+Y+NRD+ G EGDFITSPE+S
Sbjct: 36 ENNTVTPMLRHLIYKIK-STGPITVAEYMKEVLTNPAKGYYMNRDMLGEEGDFITSPEIS 94
Query: 139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHI--HL 196
QMFGE++G+W + W G+ LVELGPG+GTL+ D+LR S+ + ++ I HL
Sbjct: 95 QMFGELLGIWFISEWIAAGKNAAFQLVELGPGKGTLLGDILRVFSQLGSLLKNCDISLHL 154
Query: 197 VECSPTLQKLQHHNL---KCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTII 253
VE S L ++Q L K E NA V + ++ +G PVSW+ L+ VP + +
Sbjct: 155 VEVSQKLSEIQALTLTEEKVPLERNAESPVYMKGVTK-SGIPVSWYRDLQDVPKEY-SFY 212
Query: 254 VAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSS--FRFVLSPQPTPATLFLLQRCKWAAD 311
+AHEF+D LPVH+FQKT GW E LVDI S RFVL+P TPA F+
Sbjct: 213 LAHEFFDVLPVHKFQKTPHGWREVLVDIDPQVSDKLRFVLAPCATPAGAFI--------- 263
Query: 312 KELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLF 371
+ E +H+EVC +A + +++RI GG ALI DYG +G TD+ + ++ D+
Sbjct: 264 QNDETRDHVEVCPEAGVVIQELSQRISLTGGAALIADYGHDGTKTDTFRGFCGYRLHDVL 323
Query: 372 DNPGSADLSAYVDFASISHSAEEASERVSVHGPMTQSQFLGSLGINFRVESLLQNCTEEQ 431
PG+ADL+A VDF+ + ++ +V+ GP+ Q FL ++GI+ R++ LL +
Sbjct: 324 TAPGTADLTADVDFSYLRRMSQ---GKVASLGPVEQQTFLRNMGIDVRLKILLDKTDDPS 380
Query: 432 A-ESLRTGYWSLVGEGEAPFWEGPDEQAPIGMGTRYLAMAIV 472
+ L GY L+ P+ MG R+ +A+V
Sbjct: 381 LRQQLLQGYNMLMN--------------PMKMGERFNFLALV 408
>sp|Q6GQ37|NDUF7_XENLA NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
OS=Xenopus laevis GN=ndufaf7 PE=2 SV=1
Length = 437
Score = 266 bits (679), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 159/406 (39%), Positives = 229/406 (56%), Gaps = 36/406 (8%)
Query: 75 EHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITS 134
E +R + L+ HL IK GPI+V+EYM EVLTNP G+Y++ D+ G GDF+TS
Sbjct: 35 EKPQKRTSANALLNHLIFKIK-STGPITVSEYMREVLTNPVKGYYMHNDMLGEHGDFVTS 93
Query: 135 PEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES--L 192
PE+SQ+FGE++GVW + W G+P + LVELGPGRGTL DLLR S F +S +
Sbjct: 94 PEISQIFGELLGVWCISEWVSAGKPKAIQLVELGPGRGTLTDDLLRVFSNFGRLLDSCDI 153
Query: 193 HIHLVECSPTLQKLQHHNL--KCMD-ENNANDNVEERTISSLAGTPVSWHAALEQVPSGF 249
+HLVE SP L +Q L K ++ E ++N V + I+ G PV W+ ++ VP+G+
Sbjct: 154 SVHLVEVSPKLSDIQAQRLTGKSIEVELDSNSPVYKNGITK-TGRPVCWYQDIQDVPNGY 212
Query: 250 PTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAED--SSFRFVLSPQPTPATLFLLQRCK 307
+ +AHEF+DALP+H+ QK GW E L+DI RFVL + +Q
Sbjct: 213 -SFYIAHEFFDALPIHKLQKIKDGWREMLIDIDPKLPDKLRFVLGSNMSLVAKTFVQ--- 268
Query: 308 WAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKF 367
+ E +H+EVC A + +A++I S GG ALI DYG G TD+ + R H+
Sbjct: 269 -----DDEPRDHVEVCPSAAVIIQKLAQQINSYGGAALIADYGHMGEKTDTFRGFRAHQL 323
Query: 368 VDLFDNPGSADLSAYVDFASISHSAEEASERVSVHGPMTQSQFLGSLGINFRVESLLQNC 427
D+ +PG+ADL+A VDF + EA+ S GP+TQ FL ++GI+ R++ LL+
Sbjct: 324 HDVLTDPGTADLTADVDFNFMRRMVGEAA---SCLGPVTQHVFLKNMGIDIRLKVLLEKS 380
Query: 428 TEEQAES-LRTGYWSLVGEGEAPFWEGPDEQAPIGMGTRYLAMAIV 472
+ + L GY L+ PD+ MG R+ ++V
Sbjct: 381 NDVTVQKQLIHGYNVLM---------NPDQ-----MGQRFKFFSVV 412
>sp|Q09644|NDUF7_CAEEL NADH dehydrogenase [ubiquinone] complex I, assembly factor 7
homolog OS=Caenorhabditis elegans GN=ZK1128.1 PE=3 SV=4
Length = 426
Score = 224 bits (570), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 137/370 (37%), Positives = 202/370 (54%), Gaps = 19/370 (5%)
Query: 85 ELVKHLKGII--KFR-GGPISVAEYMEEVLTNPKAGFY----INRDVFGAEGDFITSPEV 137
E HLK + K R GPI+VAEYM+ ++ P G+Y ++ VFGA+GDFITSPE+
Sbjct: 30 EKTNHLKKFLVDKIRVSGPITVAEYMKTCVSAPLVGYYGQFSKDQKVFGAKGDFITSPEL 89
Query: 138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLV 197
+Q+FGEM+GVW G LVELGPGR LM D+L +KF + + + +HLV
Sbjct: 90 TQLFGEMIGVWVFHELANTGHKGSWQLVELGPGRAQLMNDVLNALAKFND--KDVSVHLV 147
Query: 198 ECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHE 257
E S L Q +L N+ D R + G + W+ +++ +P GF T+ + +E
Sbjct: 148 ETSDALIDEQEKSLCIYTSKNSIDTPFIRKNKTRTGVNIYWYKSIDDIPDGF-TVFIGNE 206
Query: 258 FYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKL 317
F DALP+HQF K+ W E V++ +D F+ S T L+ +A ++
Sbjct: 207 FLDALPIHQFHKSGDSWNEVYVNLTKDGDLCFMKSKGENLHTKGLIP----SAIRDDSSR 262
Query: 318 EHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVV-TDSLQAIRKHKFVDLFDNPGS 376
E ++ + + RI + GG +L++DYG +G T S +A + HK VD +NPG
Sbjct: 263 VTWECSPESGTVVNQIVDRITTFGGFSLLVDYGHDGSRNTHSFRAYKNHKQVDTLENPGL 322
Query: 377 ADLSAYVDFASISHSAEEASERVSVHGPMTQSQFLGSLGINFRVESLLQNCTE-EQAESL 435
ADL+A VDF +S + +RV ++GP Q +FL LGI R+ LLQ C + +Q E L
Sbjct: 323 ADLTADVDFGYLSTLVK---DRVVIYGPNEQREFLAQLGIEHRLRRLLQVCKDRKQQEQL 379
Query: 436 RTGYWSLVGE 445
Y L+G+
Sbjct: 380 IESYNMLMGD 389
>sp|Q8PCE3|RSMA_XANCP Ribosomal RNA small subunit methyltransferase A OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=rsmA PE=3 SV=1
Length = 262
Score = 37.0 bits (84), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 163 NLVELGPGRGTLMADLLR--GASKFKNFTESLHIHLVECSPTLQKLQ--HHNLKCMDENN 218
+LVE+GPG+G + LLR GA F L L + + + +LQ H ++ +D
Sbjct: 38 HLVEIGPGQGAITFPLLRKHGALTVIEFDRDLIAPLTDAAAPIGQLQIIHRDVLAVDFTA 97
Query: 219 ANDNVEERTISSL---AGTPVSWHA 240
D R + +L +P+ +HA
Sbjct: 98 VADGTPIRLVGNLPYNISSPILFHA 122
>sp|Q4UR39|RSMA_XANC8 Ribosomal RNA small subunit methyltransferase A OS=Xanthomonas
campestris pv. campestris (strain 8004) GN=rsmA PE=3
SV=1
Length = 262
Score = 37.0 bits (84), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 163 NLVELGPGRGTLMADLLR--GASKFKNFTESLHIHLVECSPTLQKLQ--HHNLKCMDENN 218
+LVE+GPG+G + LLR GA F L L + + + +LQ H ++ +D
Sbjct: 38 HLVEIGPGQGAITFPLLRKHGALTVIEFDRDLIAPLTDAAAPIGQLQIIHRDVLAVDFTA 97
Query: 219 ANDNVEERTISSL---AGTPVSWHA 240
D R + +L +P+ +HA
Sbjct: 98 VADGTPIRLVGNLPYNISSPILFHA 122
>sp|B0RUI3|RSMA_XANCB Ribosomal RNA small subunit methyltransferase A OS=Xanthomonas
campestris pv. campestris (strain B100) GN=rsmA PE=3
SV=1
Length = 262
Score = 37.0 bits (84), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 163 NLVELGPGRGTLMADLLR--GASKFKNFTESLHIHLVECSPTLQKLQ--HHNLKCMDENN 218
+LVE+GPG+G + LLR GA F L L + + + +LQ H ++ +D
Sbjct: 38 HLVEIGPGQGAITFPLLRKHGALTVIEFDRDLIAPLTDAAAPIGQLQIIHRDVLAVDFTA 97
Query: 219 ANDNVEERTISSL---AGTPVSWHA 240
D R + +L +P+ +HA
Sbjct: 98 VADGTPIRLVGNLPYNISSPILFHA 122
>sp|Q8PP25|RSMA_XANAC Ribosomal RNA small subunit methyltransferase A OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=rsmA PE=3 SV=1
Length = 262
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 163 NLVELGPGRGTLMADLLR--GASKFKNFTESLHIHLVECSPTLQKLQ--HHNLKCMDENN 218
+LVE+GPG+G + LLR GA F L L E + + L+ H ++ +D
Sbjct: 38 HLVEIGPGQGAITFPLLRKHGALTVIEFDRDLIAPLTEAAAPIGALRIIHRDVLSVDFTA 97
Query: 219 ANDNVEERTISSL---AGTPVSWHA 240
D R + +L +P+ +HA
Sbjct: 98 LADGTPIRLVGNLPYNISSPILFHA 122
>sp|A7I2T7|MNMC_CAMHC tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Campylobacter hominis (strain ATCC
BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=mnmC PE=3
SV=1
Length = 667
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 141 FGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECS 200
FGE V+ + E + NRV + ELG G G + L A+KFKN + LH +E
Sbjct: 24 FGESEFVFGSAVNEILKTQNRVIVAELGFGLGR---NFLNIAAKFKNSDKILHFVSIEKF 80
Query: 201 PTLQK 205
P LQK
Sbjct: 81 P-LQK 84
>sp|Q3ZT31|SNX25_MOUSE Sorting nexin-25 OS=Mus musculus GN=Snx25 PE=2 SV=3
Length = 840
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 15/76 (19%)
Query: 132 ITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES 191
ITS EV++ GE + + + RVNL E+G G T + R S+F+N
Sbjct: 514 ITSAEVTEENGEQMPCYFV----------RVNLQEVG-GVETKNWTVPRRLSEFQN---- 558
Query: 192 LHIHLVECSPTLQKLQ 207
LH L EC P+L+K+Q
Sbjct: 559 LHRKLSECVPSLKKVQ 574
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 188,278,681
Number of Sequences: 539616
Number of extensions: 8215151
Number of successful extensions: 20732
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 20669
Number of HSP's gapped (non-prelim): 24
length of query: 483
length of database: 191,569,459
effective HSP length: 121
effective length of query: 362
effective length of database: 126,275,923
effective search space: 45711884126
effective search space used: 45711884126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)