Query 011546
Match_columns 483
No_of_seqs 201 out of 859
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 02:34:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1565 Uncharacterized conser 100.0 5.6E-92 1.2E-96 713.2 29.9 350 85-476 3-361 (370)
2 KOG2901 Uncharacterized conser 100.0 6.1E-84 1.3E-88 642.6 19.5 391 73-483 24-415 (415)
3 PF02636 Methyltransf_28: Puta 100.0 4.9E-58 1.1E-62 452.8 19.3 245 144-405 1-252 (252)
4 PHA03412 putative methyltransf 96.9 0.0038 8.2E-08 62.1 8.3 70 125-211 27-96 (241)
5 PF05175 MTS: Methyltransferas 96.6 0.015 3.3E-07 54.2 9.9 45 162-213 33-77 (170)
6 TIGR00740 methyltransferase, p 96.4 0.019 4.2E-07 56.1 9.9 48 161-213 54-101 (239)
7 PF00398 RrnaAD: Ribosomal RNA 96.2 0.02 4.4E-07 57.2 8.5 44 160-212 30-73 (262)
8 PRK15451 tRNA cmo(5)U34 methyl 95.9 0.06 1.3E-06 53.2 10.6 48 161-213 57-104 (247)
9 PRK14896 ksgA 16S ribosomal RN 95.9 0.046 1E-06 54.6 9.8 43 161-212 30-72 (258)
10 TIGR03587 Pse_Me-ase pseudamin 95.8 0.068 1.5E-06 51.6 10.2 44 161-211 44-87 (204)
11 PRK01683 trans-aconitate 2-met 95.8 0.061 1.3E-06 53.0 10.1 54 151-211 22-75 (258)
12 PF13847 Methyltransf_31: Meth 95.7 0.052 1.1E-06 49.2 8.4 47 161-213 4-50 (152)
13 PLN02244 tocopherol O-methyltr 95.7 0.46 9.9E-06 49.4 16.5 105 81-212 52-162 (340)
14 PHA03411 putative methyltransf 95.5 0.077 1.7E-06 54.0 9.6 99 85-211 10-108 (279)
15 PRK06202 hypothetical protein; 95.5 0.13 2.8E-06 50.0 11.0 49 160-211 60-108 (232)
16 PRK11036 putative S-adenosyl-L 95.4 0.12 2.5E-06 51.3 10.3 53 150-212 35-87 (255)
17 smart00650 rADc Ribosomal RNA 95.4 0.048 1E-06 50.6 7.1 49 155-212 8-56 (169)
18 COG0030 KsgA Dimethyladenosine 95.2 0.073 1.6E-06 53.6 8.2 43 161-212 31-73 (259)
19 PF13649 Methyltransf_25: Meth 95.2 0.04 8.7E-07 46.4 5.5 45 164-212 1-45 (101)
20 TIGR02752 MenG_heptapren 2-hep 95.2 0.16 3.5E-06 49.0 10.4 59 148-212 33-91 (231)
21 TIGR03438 probable methyltrans 95.2 0.058 1.3E-06 55.1 7.6 45 162-212 65-109 (301)
22 PF12847 Methyltransf_18: Meth 95.2 0.048 1E-06 46.1 5.9 43 162-211 3-45 (112)
23 PF08242 Methyltransf_12: Meth 95.2 0.0052 1.1E-07 51.4 -0.1 41 165-212 1-41 (99)
24 PRK07580 Mg-protoporphyrin IX 95.1 0.18 3.9E-06 48.4 10.2 57 147-212 50-106 (230)
25 TIGR02072 BioC biotin biosynth 95.0 0.084 1.8E-06 50.4 7.8 62 144-212 18-79 (240)
26 PRK08287 cobalt-precorrin-6Y C 94.8 0.15 3.2E-06 48.0 8.7 49 157-212 28-76 (187)
27 TIGR02021 BchM-ChlM magnesium 94.6 0.26 5.5E-06 47.5 10.0 44 160-212 55-98 (219)
28 PRK14103 trans-aconitate 2-met 94.5 0.24 5.2E-06 49.0 9.7 54 149-209 18-71 (255)
29 PRK09328 N5-glutamine S-adenos 94.4 0.28 6.1E-06 48.6 10.0 46 160-212 108-153 (275)
30 PRK00274 ksgA 16S ribosomal RN 94.4 0.11 2.3E-06 52.4 7.0 67 124-212 19-85 (272)
31 TIGR02469 CbiT precorrin-6Y C5 94.4 0.12 2.7E-06 44.0 6.6 51 155-212 14-64 (124)
32 PRK13944 protein-L-isoaspartat 94.4 0.16 3.5E-06 48.8 7.9 46 162-213 74-119 (205)
33 TIGR00755 ksgA dimethyladenosi 94.3 0.11 2.4E-06 51.5 6.9 48 156-212 25-72 (253)
34 PF13489 Methyltransf_23: Meth 94.1 0.18 3.8E-06 45.1 7.1 39 159-206 21-59 (161)
35 PRK11805 N5-glutamine S-adenos 93.9 0.61 1.3E-05 48.0 11.6 70 129-212 109-178 (307)
36 TIGR03533 L3_gln_methyl protei 93.8 0.67 1.4E-05 47.1 11.5 71 128-212 96-166 (284)
37 PRK09489 rsmC 16S ribosomal RN 93.7 0.29 6.3E-06 51.2 8.8 45 162-213 198-242 (342)
38 PRK13942 protein-L-isoaspartat 93.6 0.21 4.5E-06 48.4 7.0 47 161-213 77-123 (212)
39 PRK08317 hypothetical protein; 93.5 0.31 6.8E-06 46.3 8.1 51 154-210 13-63 (241)
40 COG3963 Phospholipid N-methylt 93.4 0.23 5E-06 47.2 6.7 46 160-211 48-93 (194)
41 PF02384 N6_Mtase: N-6 DNA Met 93.4 0.18 3.8E-06 51.3 6.5 74 127-211 24-97 (311)
42 PRK00121 trmB tRNA (guanine-N( 93.3 0.18 4E-06 48.3 6.2 67 134-212 19-85 (202)
43 PRK00312 pcm protein-L-isoaspa 93.3 0.76 1.7E-05 44.0 10.5 69 124-213 54-122 (212)
44 PRK15001 SAM-dependent 23S rib 93.3 0.34 7.4E-06 51.4 8.6 44 162-212 230-273 (378)
45 PTZ00338 dimethyladenosine tra 93.1 0.23 5E-06 50.8 6.8 44 161-213 37-80 (294)
46 TIGR02987 met_A_Alw26 type II 92.9 0.21 4.6E-06 54.9 6.7 83 127-213 2-85 (524)
47 TIGR03534 RF_mod_PrmC protein- 92.9 0.61 1.3E-05 45.3 9.3 45 161-212 88-132 (251)
48 PF13679 Methyltransf_32: Meth 92.9 0.62 1.3E-05 42.1 8.6 48 160-210 25-72 (141)
49 PRK11705 cyclopropane fatty ac 92.8 0.9 1.9E-05 48.2 11.1 57 148-212 155-211 (383)
50 PF08241 Methyltransf_11: Meth 92.8 0.51 1.1E-05 37.9 7.2 40 165-212 1-40 (95)
51 PRK11088 rrmA 23S rRNA methylt 92.8 0.37 8E-06 48.3 7.7 45 162-210 87-131 (272)
52 PRK14967 putative methyltransf 92.7 0.61 1.3E-05 45.2 9.0 43 162-212 38-80 (223)
53 TIGR00537 hemK_rel_arch HemK-r 92.6 0.53 1.2E-05 43.9 8.1 42 162-212 21-62 (179)
54 TIGR03704 PrmC_rel_meth putati 92.6 0.62 1.3E-05 46.4 9.0 45 161-212 87-131 (251)
55 PRK07402 precorrin-6B methylas 92.5 0.35 7.5E-06 45.9 6.8 45 161-212 41-85 (196)
56 PRK00107 gidB 16S rRNA methylt 92.5 0.53 1.1E-05 45.0 8.0 76 127-213 15-91 (187)
57 KOG0820 Ribosomal RNA adenine 92.4 0.58 1.2E-05 47.7 8.4 52 154-214 52-103 (315)
58 KOG1540 Ubiquinone biosynthesi 92.4 0.95 2.1E-05 45.8 9.8 54 156-210 96-149 (296)
59 PRK00377 cbiT cobalt-precorrin 92.4 0.36 7.9E-06 45.9 6.8 53 155-213 35-87 (198)
60 TIGR00080 pimt protein-L-isoas 92.4 0.49 1.1E-05 45.6 7.8 47 161-213 78-124 (215)
61 PRK00216 ubiE ubiquinone/menaq 92.3 0.52 1.1E-05 45.1 7.7 46 161-212 52-97 (239)
62 TIGR00138 gidB 16S rRNA methyl 92.0 0.48 1E-05 44.9 6.9 44 162-212 44-87 (181)
63 PF07757 AdoMet_MTase: Predict 91.8 0.24 5.2E-06 43.7 4.3 39 140-178 36-76 (112)
64 PRK01544 bifunctional N5-gluta 91.8 0.65 1.4E-05 51.1 8.7 45 161-212 139-183 (506)
65 KOG2361 Predicted methyltransf 91.8 1.1 2.4E-05 44.9 9.3 58 147-209 55-115 (264)
66 TIGR00536 hemK_fam HemK family 91.8 1.9 4.1E-05 43.6 11.4 44 162-212 116-159 (284)
67 TIGR00091 tRNA (guanine-N(7)-) 91.7 0.37 8E-06 45.9 5.9 44 162-212 18-61 (194)
68 PF13659 Methyltransf_26: Meth 91.7 0.39 8.5E-06 40.9 5.5 44 162-213 2-45 (117)
69 COG2226 UbiE Methylase involve 91.6 1.3 2.8E-05 44.2 9.8 51 156-213 47-97 (238)
70 PRK10258 biotin biosynthesis p 91.5 0.83 1.8E-05 44.8 8.4 42 161-211 43-84 (251)
71 TIGR01934 MenG_MenH_UbiE ubiqu 91.5 0.72 1.6E-05 43.6 7.7 53 153-211 32-84 (223)
72 PLN02233 ubiquinone biosynthes 91.3 2 4.3E-05 43.0 10.9 49 157-211 70-118 (261)
73 smart00138 MeTrc Methyltransfe 91.1 3.7 8E-05 41.3 12.7 124 81-210 22-151 (264)
74 PF05185 PRMT5: PRMT5 arginine 90.6 1 2.3E-05 48.9 8.6 63 139-204 164-227 (448)
75 PRK11207 tellurite resistance 90.4 0.7 1.5E-05 44.1 6.5 43 161-212 31-73 (197)
76 PRK00811 spermidine synthase; 90.3 0.98 2.1E-05 45.8 7.8 73 128-212 49-121 (283)
77 PTZ00098 phosphoethanolamine N 90.3 0.89 1.9E-05 45.5 7.3 66 129-211 30-95 (263)
78 PRK05785 hypothetical protein; 90.2 0.84 1.8E-05 44.7 7.0 41 161-209 52-92 (226)
79 COG2263 Predicted RNA methylas 90.1 2.1 4.6E-05 41.5 9.3 44 162-213 47-90 (198)
80 TIGR00417 speE spermidine synt 90.1 0.85 1.8E-05 45.8 7.0 72 129-212 46-117 (270)
81 KOG2904 Predicted methyltransf 89.9 1.3 2.9E-05 45.2 8.1 95 103-209 90-190 (328)
82 PRK04457 spermidine synthase; 89.5 0.7 1.5E-05 46.4 5.9 47 159-212 65-111 (262)
83 TIGR01983 UbiG ubiquinone bios 89.4 1.6 3.4E-05 41.8 8.0 62 142-212 26-88 (224)
84 PLN02336 phosphoethanolamine N 89.1 2.8 6.1E-05 45.2 10.7 44 160-211 266-309 (475)
85 COG2518 Pcm Protein-L-isoaspar 89.1 1.1 2.5E-05 43.8 6.8 74 119-213 42-116 (209)
86 PF01135 PCMT: Protein-L-isoas 89.1 1.2 2.5E-05 43.5 6.9 52 156-213 68-119 (209)
87 PRK11873 arsM arsenite S-adeno 88.7 2.1 4.5E-05 42.6 8.6 46 161-212 78-123 (272)
88 TIGR00477 tehB tellurite resis 88.7 1.1 2.5E-05 42.6 6.5 42 161-211 31-72 (195)
89 PRK12335 tellurite resistance 88.6 1.8 4E-05 43.7 8.3 42 162-212 122-163 (287)
90 PRK13943 protein-L-isoaspartat 88.6 1.2 2.5E-05 46.4 6.9 46 161-212 81-126 (322)
91 cd02440 AdoMet_MTases S-adenos 88.5 0.77 1.7E-05 36.3 4.5 38 163-208 1-38 (107)
92 PF05206 TRM13: Methyltransfer 88.5 0.99 2.2E-05 45.6 6.2 50 150-201 7-57 (259)
93 COG2890 HemK Methylase of poly 88.4 2.2 4.8E-05 43.3 8.7 42 163-211 113-154 (280)
94 TIGR00406 prmA ribosomal prote 88.4 2.5 5.3E-05 42.9 9.0 43 162-212 161-203 (288)
95 COG4106 Tam Trans-aconitate me 87.9 0.98 2.1E-05 44.7 5.5 89 151-266 21-109 (257)
96 PLN02585 magnesium protoporphy 87.9 2.1 4.5E-05 44.4 8.3 43 161-212 145-187 (315)
97 PF06325 PrmA: Ribosomal prote 87.7 3.6 7.9E-05 42.3 9.8 90 147-262 149-238 (295)
98 PRK04266 fibrillarin; Provisio 87.4 1.9 4.2E-05 42.4 7.3 50 154-210 66-115 (226)
99 PLN02490 MPBQ/MSBQ methyltrans 87.3 3.2 6.9E-05 43.6 9.3 44 161-211 114-157 (340)
100 TIGR03439 methyl_EasF probable 86.5 3 6.6E-05 43.3 8.5 50 160-212 76-125 (319)
101 PLN02396 hexaprenyldihydroxybe 86.4 2.1 4.6E-05 44.5 7.3 41 162-211 133-173 (322)
102 COG4123 Predicted O-methyltran 86.3 1.6 3.5E-05 43.8 6.2 57 142-212 33-89 (248)
103 PF01596 Methyltransf_3: O-met 86.3 2.9 6.2E-05 40.7 7.8 46 162-213 47-92 (205)
104 COG2264 PrmA Ribosomal protein 86.2 2.8 6.1E-05 43.2 8.0 57 147-212 150-206 (300)
105 PRK14968 putative methyltransf 86.0 2.5 5.5E-05 38.9 7.0 42 162-212 25-66 (188)
106 smart00828 PKS_MT Methyltransf 85.9 1.4 3.1E-05 42.2 5.5 43 163-212 2-44 (224)
107 TIGR02081 metW methionine bios 85.6 2.4 5.3E-05 40.0 6.8 38 162-207 15-52 (194)
108 PRK00517 prmA ribosomal protei 85.5 2.5 5.3E-05 41.9 7.0 43 162-212 121-163 (250)
109 TIGR00438 rrmJ cell division p 85.4 1.5 3.1E-05 41.3 5.1 38 160-203 32-69 (188)
110 TIGR01444 fkbM_fam methyltrans 85.3 1.4 2.9E-05 39.1 4.7 43 163-212 1-43 (143)
111 COG2813 RsmC 16S RNA G1207 met 85.3 3.3 7.2E-05 42.7 7.9 75 126-213 126-204 (300)
112 PLN02781 Probable caffeoyl-CoA 84.8 2.8 6E-05 41.4 7.0 46 162-213 70-115 (234)
113 PRK14966 unknown domain/N5-glu 84.0 5 0.00011 43.3 8.9 94 103-213 198-297 (423)
114 PF00891 Methyltransf_2: O-met 83.9 6.4 0.00014 38.4 9.1 62 133-201 68-134 (241)
115 PRK11188 rrmJ 23S rRNA methylt 83.4 1.8 3.9E-05 41.9 4.9 35 161-201 52-86 (209)
116 KOG4300 Predicted methyltransf 83.2 1.5 3.3E-05 43.1 4.2 47 156-213 72-121 (252)
117 PRK05134 bifunctional 3-demeth 83.0 4.7 0.0001 38.9 7.6 42 161-211 49-90 (233)
118 KOG0822 Protein kinase inhibit 82.7 2.6 5.6E-05 46.5 6.1 62 139-203 346-407 (649)
119 PLN02366 spermidine synthase 82.4 5.8 0.00013 41.0 8.4 62 139-212 75-136 (308)
120 COG2519 GCD14 tRNA(1-methylade 82.4 3.6 7.9E-05 41.4 6.6 54 154-213 88-141 (256)
121 TIGR00452 methyltransferase, p 82.2 5.4 0.00012 41.4 8.1 45 154-206 115-159 (314)
122 PF05401 NodS: Nodulation prot 81.5 6 0.00013 38.6 7.6 50 155-213 38-87 (201)
123 PRK10909 rsmD 16S rRNA m(2)G96 81.2 5.6 0.00012 38.5 7.4 44 162-213 55-98 (199)
124 PF10294 Methyltransf_16: Puta 80.7 4.1 8.9E-05 38.2 6.1 41 161-208 46-86 (173)
125 PRK14121 tRNA (guanine-N(7)-)- 80.7 4.3 9.3E-05 43.4 6.9 42 163-211 125-166 (390)
126 PRK06922 hypothetical protein; 80.5 3.8 8.2E-05 46.6 6.7 43 162-211 420-462 (677)
127 PF01209 Ubie_methyltran: ubiE 80.5 2.4 5.3E-05 41.9 4.7 47 161-213 48-94 (233)
128 PF08123 DOT1: Histone methyla 79.8 3.7 8.1E-05 40.0 5.6 67 138-211 20-86 (205)
129 PRK01581 speE spermidine synth 79.5 3.6 7.9E-05 43.7 5.8 59 139-209 134-192 (374)
130 PRK03522 rumB 23S rRNA methylu 78.6 5.8 0.00013 40.7 7.0 42 162-212 175-216 (315)
131 PF08704 GCD14: tRNA methyltra 78.4 6.6 0.00014 39.4 7.0 54 154-213 34-87 (247)
132 PF12147 Methyltransf_20: Puta 77.5 20 0.00043 37.2 10.2 49 160-213 135-183 (311)
133 PRK13168 rumA 23S rRNA m(5)U19 77.3 5.9 0.00013 42.7 6.8 59 142-212 282-340 (443)
134 PLN02336 phosphoethanolamine N 77.1 5.2 0.00011 43.2 6.4 38 162-208 39-76 (475)
135 TIGR00095 RNA methyltransferas 77.1 8.4 0.00018 36.7 7.1 43 162-212 51-93 (189)
136 PTZ00146 fibrillarin; Provisio 77.1 5.3 0.00011 41.2 6.0 45 154-204 126-170 (293)
137 PF09243 Rsm22: Mitochondrial 76.5 16 0.00035 36.9 9.4 48 160-213 33-80 (274)
138 COG0220 Predicted S-adenosylme 75.7 7.2 0.00016 38.7 6.4 43 162-211 50-92 (227)
139 PF02390 Methyltransf_4: Putat 75.6 6.1 0.00013 37.9 5.8 47 157-211 15-61 (195)
140 TIGR02143 trmA_only tRNA (urac 75.5 6.6 0.00014 41.2 6.5 57 143-212 184-240 (353)
141 PF07021 MetW: Methionine bios 74.8 7 0.00015 37.9 5.8 34 162-203 15-48 (193)
142 PLN02823 spermine synthase 74.7 13 0.00029 38.9 8.4 72 129-212 77-148 (336)
143 PRK03612 spermidine synthase; 74.4 5.6 0.00012 44.0 5.9 59 139-209 281-339 (521)
144 PRK04148 hypothetical protein; 74.0 10 0.00022 34.7 6.4 54 144-208 3-56 (134)
145 TIGR02716 C20_methyl_CrtF C-20 72.8 7.6 0.00016 39.4 6.0 44 160-211 149-192 (306)
146 PRK05031 tRNA (uracil-5-)-meth 72.5 8.7 0.00019 40.4 6.5 58 142-212 192-249 (362)
147 PLN02476 O-methyltransferase 72.3 10 0.00023 38.7 6.8 46 162-213 120-165 (278)
148 COG4121 Uncharacterized conser 72.2 3 6.4E-05 42.1 2.7 77 128-205 24-108 (252)
149 COG0421 SpeE Spermidine syntha 71.6 13 0.00028 38.1 7.3 71 131-213 52-122 (282)
150 KOG2901 Uncharacterized conser 71.1 0.034 7.4E-07 57.6 -11.4 150 101-274 68-228 (415)
151 COG2230 Cfa Cyclopropane fatty 70.5 18 0.0004 37.1 8.0 74 130-213 44-117 (283)
152 PRK15068 tRNA mo(5)U34 methylt 69.3 9.7 0.00021 39.4 5.9 36 162-205 124-159 (322)
153 PF02353 CMAS: Mycolic acid cy 68.7 18 0.00039 36.7 7.6 63 142-212 44-106 (273)
154 TIGR02085 meth_trns_rumB 23S r 67.7 14 0.0003 39.1 6.7 42 162-212 235-276 (374)
155 TIGR00479 rumA 23S rRNA (uraci 65.6 17 0.00037 38.9 7.0 42 162-212 294-335 (431)
156 PF01564 Spermine_synth: Sperm 64.7 18 0.00038 36.1 6.5 74 128-213 49-122 (246)
157 TIGR00478 tly hemolysin TlyA f 64.7 22 0.00047 35.2 7.1 52 146-205 60-113 (228)
158 TIGR01177 conserved hypothetic 64.6 21 0.00046 36.8 7.3 66 131-212 160-225 (329)
159 COG4122 Predicted O-methyltran 64.5 20 0.00044 35.4 6.8 46 162-213 61-106 (219)
160 PRK10901 16S rRNA methyltransf 64.0 18 0.0004 38.8 6.9 46 161-213 245-290 (427)
161 PF03291 Pox_MCEL: mRNA cappin 63.2 14 0.0003 38.6 5.7 59 145-211 41-105 (331)
162 COG2242 CobL Precorrin-6B meth 61.9 22 0.00049 34.3 6.3 45 162-213 36-80 (187)
163 KOG2811 Uncharacterized conser 61.3 14 0.0003 39.3 5.1 36 162-201 184-219 (420)
164 COG0286 HsdM Type I restrictio 61.1 14 0.0003 40.7 5.4 70 128-211 165-234 (489)
165 PTZ00357 methyltransferase; Pr 59.1 42 0.00091 38.8 8.6 39 161-202 701-739 (1072)
166 PLN03075 nicotianamine synthas 58.3 39 0.00086 34.9 7.8 47 161-212 124-170 (296)
167 PF14737 DUF4470: Domain of un 58.3 35 0.00076 29.1 6.4 52 157-211 20-73 (100)
168 COG2227 UbiG 2-polyprenyl-3-me 57.3 22 0.00048 35.7 5.6 77 162-265 61-140 (243)
169 PRK13255 thiopurine S-methyltr 56.8 25 0.00054 34.4 5.9 39 159-206 36-74 (218)
170 PRK11727 23S rRNA mA1618 methy 54.1 28 0.00061 36.3 6.1 47 160-213 114-160 (321)
171 PF05219 DREV: DREV methyltran 53.0 30 0.00064 35.2 5.8 71 124-209 64-134 (265)
172 PLN02672 methionine S-methyltr 51.4 20 0.00043 43.2 5.0 44 162-212 120-163 (1082)
173 TIGR00446 nop2p NOL1/NOP2/sun 51.3 26 0.00057 35.0 5.2 46 162-213 73-118 (264)
174 PRK14904 16S rRNA methyltransf 51.1 35 0.00076 36.8 6.5 46 162-213 252-297 (445)
175 PRK14902 16S rRNA methyltransf 51.1 34 0.00073 36.9 6.3 46 162-213 252-297 (444)
176 TIGR00308 TRM1 tRNA(guanine-26 49.4 37 0.0008 36.2 6.1 68 140-213 23-91 (374)
177 TIGR00563 rsmB ribosomal RNA s 49.4 44 0.00095 35.9 6.8 45 162-213 240-284 (426)
178 TIGR03840 TMPT_Se_Te thiopurin 48.7 51 0.0011 32.1 6.6 37 161-206 35-71 (213)
179 COG4976 Predicted methyltransf 48.6 20 0.00042 36.2 3.6 39 162-209 127-165 (287)
180 PRK01544 bifunctional N5-gluta 48.2 23 0.00051 39.1 4.6 33 314-346 452-484 (506)
181 PLN02589 caffeoyl-CoA O-methyl 47.6 65 0.0014 32.3 7.3 64 137-213 63-126 (247)
182 PRK00536 speE spermidine synth 47.4 38 0.00082 34.4 5.6 59 140-212 57-115 (262)
183 KOG0821 Predicted ribosomal RN 46.0 25 0.00054 35.2 3.9 36 160-203 50-85 (326)
184 KOG2244 Highly conserved prote 45.7 9.5 0.00021 42.3 1.1 42 103-144 364-416 (786)
185 PRK04338 N(2),N(2)-dimethylgua 45.6 56 0.0012 34.8 6.8 71 130-212 32-102 (382)
186 PF03848 TehB: Tellurite resis 43.6 75 0.0016 30.7 6.8 37 160-205 30-66 (192)
187 COG4301 Uncharacterized conser 43.1 94 0.002 31.8 7.4 43 161-206 79-121 (321)
188 PRK14903 16S rRNA methyltransf 42.9 65 0.0014 34.8 6.9 46 162-213 239-284 (431)
189 KOG1271 Methyltransferases [Ge 42.5 21 0.00046 34.8 2.7 37 163-206 70-106 (227)
190 KOG1541 Predicted protein carb 42.2 54 0.0012 33.0 5.5 71 128-209 20-90 (270)
191 PF11784 DUF3320: Protein of u 40.3 47 0.001 25.2 3.8 36 75-111 2-37 (52)
192 KOG1774 Small nuclear ribonucl 38.7 18 0.0004 30.2 1.5 34 101-134 44-82 (88)
193 PF05891 Methyltransf_PK: AdoM 38.7 37 0.0008 33.6 3.8 46 160-213 55-100 (218)
194 PF06080 DUF938: Protein of un 38.1 40 0.00086 33.0 3.9 42 163-211 28-69 (204)
195 KOG2915 tRNA(1-methyladenosine 37.8 87 0.0019 32.4 6.3 44 162-211 107-150 (314)
196 COG1331 Highly conserved prote 37.3 23 0.00051 40.3 2.5 49 103-152 301-353 (667)
197 KOG3191 Predicted N6-DNA-methy 37.3 1.2E+02 0.0027 29.6 7.0 48 161-214 44-91 (209)
198 PRK14901 16S rRNA methyltransf 36.4 82 0.0018 33.9 6.4 45 162-212 254-298 (434)
199 COG0802 Predicted ATPase or ki 35.1 53 0.0012 30.6 4.1 54 138-200 11-66 (149)
200 PRK15128 23S rRNA m(5)C1962 me 33.9 59 0.0013 34.8 4.8 43 162-212 222-264 (396)
201 COG5459 Predicted rRNA methyla 33.4 19 0.00041 38.3 0.9 42 161-208 114-155 (484)
202 PF03602 Cons_hypoth95: Conser 33.2 70 0.0015 30.4 4.7 68 132-213 20-87 (183)
203 PRK13256 thiopurine S-methyltr 33.0 1.4E+02 0.0031 29.5 7.0 50 151-209 34-83 (226)
204 KOG1270 Methyltransferases [Co 32.6 47 0.001 34.0 3.5 40 162-210 91-130 (282)
205 PRK11783 rlmL 23S rRNA m(2)G24 31.9 2.5E+02 0.0054 32.4 9.7 69 142-213 174-278 (702)
206 PRK11783 rlmL 23S rRNA m(2)G24 30.9 64 0.0014 37.2 4.7 43 162-212 540-582 (702)
207 PLN02668 indole-3-acetate carb 29.6 1.2E+02 0.0026 32.6 6.2 48 137-184 36-91 (386)
208 PF03514 GRAS: GRAS domain fam 29.0 1.5E+02 0.0032 31.5 6.8 114 84-199 21-149 (374)
209 PF08003 Methyltransf_9: Prote 28.4 65 0.0014 33.6 3.8 42 162-212 117-158 (315)
210 KOG3010 Methyltransferase [Gen 27.8 1.1E+02 0.0024 31.1 5.1 35 163-206 36-70 (261)
211 PF01402 RHH_1: Ribbon-helix-h 27.3 90 0.002 21.5 3.3 27 84-112 8-34 (39)
212 KOG2918 Carboxymethyl transfer 26.7 1.5E+02 0.0033 31.0 6.1 67 134-207 60-129 (335)
213 COG4076 Predicted RNA methylas 26.6 1.1E+02 0.0024 30.1 4.8 64 129-212 12-75 (252)
214 KOG3924 Putative protein methy 26.5 1.1E+02 0.0024 33.0 5.2 72 138-213 170-241 (419)
215 PRK01747 mnmC bifunctional tRN 26.3 1.5E+02 0.0032 33.7 6.6 70 141-211 34-113 (662)
216 COG3876 Uncharacterized protei 26.3 20 0.00043 37.4 -0.3 73 109-183 75-150 (409)
217 PF01170 UPF0020: Putative RNA 25.4 4.1E+02 0.0088 24.9 8.4 52 162-213 30-83 (179)
218 KOG2940 Predicted methyltransf 24.8 1.6E+02 0.0035 29.9 5.6 61 139-208 52-112 (325)
219 KOG3178 Hydroxyindole-O-methyl 24.6 3.9E+02 0.0084 28.4 8.7 78 124-211 134-219 (342)
220 COG0500 SmtA SAM-dependent met 23.7 1.6E+02 0.0035 23.5 4.8 39 164-209 52-90 (257)
221 KOG1975 mRNA cap methyltransfe 23.5 1.1E+02 0.0023 32.5 4.3 91 315-413 229-324 (389)
222 PRK00050 16S rRNA m(4)C1402 me 23.5 2.7E+02 0.0058 28.8 7.3 45 162-212 21-65 (296)
223 KOG2899 Predicted methyltransf 22.9 1.4E+02 0.003 30.5 4.8 46 161-213 59-104 (288)
224 PF05724 TPMT: Thiopurine S-me 22.9 1.5E+02 0.0034 28.9 5.2 49 149-206 26-74 (218)
225 PF05148 Methyltransf_8: Hypot 22.1 81 0.0018 31.2 3.0 22 157-178 69-90 (219)
226 PF05050 Methyltransf_21: Meth 20.8 1.8E+02 0.004 25.5 4.9 40 166-210 1-42 (167)
No 1
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.6e-92 Score=713.19 Aligned_cols=350 Identities=34% Similarity=0.547 Sum_probs=307.5
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEE
Q 011546 85 ELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNL 164 (483)
Q Consensus 85 ~L~~~i~~~I~~~~GpIsf~~FM~~aLY~P~~GYY~~~~~~G~~GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~I 164 (483)
.+..+|+..|+.. |||||++||++|||+|++|||+++.+||++||||||||||++|||+||.||+++|+++|.|.++.|
T Consensus 3 ~~~~~~~~~i~~~-g~i~f~~fM~~~L~~p~~GYYs~~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~l 81 (370)
T COG1565 3 LLALIIRALIAQG-GPISFSDFMELALYDPEHGYYSSAVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKL 81 (370)
T ss_pred cHHHHHHHHHhcC-CCccHHHHHHHHHcCCCCcccccchhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceE
Confidence 4677888888887 999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred EEEcCCcchhHHHHHHHHh-cCcCccccceEEEEecChhhHHHHHHhcccccccCcCCcccceeeccCCCCceeeccccc
Q 011546 165 VELGPGRGTLMADLLRGAS-KFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALE 243 (483)
Q Consensus 165 vEiGaG~GtLa~DIL~~l~-~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~sl~ 243 (483)
||||||+|+||.|||++++ ..|++++.++|+|||+||.||++||++|+... ..++|+..++
T Consensus 82 vEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~------------------~~~~~~~~~e 143 (370)
T COG1565 82 VEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE------------------DLIRWVEWVE 143 (370)
T ss_pred EEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc------------------cchhHHHHHH
Confidence 9999999999999999995 58999999999999999999999999998642 2688988889
Q ss_pred cCCCCCCEEEEEecccccccceEEEEcCCeeEEEEEEEcCCCceEEEeCCCCChhhHHHHHHhhhhhcccCCCCcEEEEc
Q 011546 244 QVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVC 323 (483)
Q Consensus 244 ~lp~~~~~iiiANEffDALPv~~f~~~~~~w~E~~V~~~~~~~f~~v~~p~~~~~~~~l~~~~~~~~~~~~~~g~~~Ei~ 323 (483)
++|.++++||||||||||||||||+++++.|+|++|.-+.++++.+- .+....-..++.. .......+|+++|+|
T Consensus 144 ~~p~~~~~i~~~NElfDAlPv~q~~~~~~~~~Er~~~~~~~~~~~~~-~~~~~~~~~~ll~----l~~~~~~~g~~~E~~ 218 (370)
T COG1565 144 DLPKKFPGIVVSNELFDALPVEQFIRTKGLFVERVVVLDAEGRLVFS-HAINELIDEALLP----LDAPEAEDGYILEVS 218 (370)
T ss_pred hccccCceEEEechhhccccceeEeccCceEEEEeeccCcccceeec-cccccchhhhccC----cccccccCCceeeeC
Confidence 99998899999999999999999999999999999964455565553 1111110001111 111235689999999
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEEeCCCCCC--------cCCccceeccccccCCCCCCCccccccccCHHHHHHHHHHh
Q 011546 324 AKAMELTGAMAKRIGSDGGGALIIDYGLNGV--------VTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAEEA 395 (483)
Q Consensus 324 ~~a~~~l~~la~~l~~~~G~~LiIDYG~~~~--------~~gTLr~yr~H~~~dpl~~PG~~DITAhVdF~~L~~~a~~~ 395 (483)
|++.+|++.|++++++ |++|+|||||+.. .++|+++|++|.++|||.+||++||||||||++|+.+++++
T Consensus 219 ~a~~~~l~~ia~~L~~--G~~l~iDYG~~~~~~~~~~r~~g~~~~~~~~h~~~~~~~~~G~aDLTahVdFt~L~~~~~~~ 296 (370)
T COG1565 219 PAREALLKAIAERLER--GVFLFIDYGYPAEEYYHPRRAYGTTLQAYRHHVHDDPLANPGLADLTAHVDFTALAKAAKAA 296 (370)
T ss_pred HHHHHHHHHHHHHHhh--CeEEEEecCCcccccccccccCccHHHHHHhhccCChhhccCccceeeeecHHHHHHHHHHc
Confidence 9999999999999998 9999999999542 34566678999999999999999999999999999999998
Q ss_pred cCceeeeccccHHHHHHhCChHHHHHHHHhcCCHHHHHHHHHHHhHhhcCCCCCCCCCCCCCCCCCCcccccEEEEecCC
Q 011546 396 SERVSVHGPMTQSQFLGSLGINFRVESLLQNCTEEQAESLRTGYWSLVGEGEAPFWEGPDEQAPIGMGTRYLAMAIVNKN 475 (483)
Q Consensus 396 g~g~~~~g~~tQ~~FL~~lGI~~rl~~L~~~~~~~~~~~~~~~~~rLi~~~~~~~~~~~~~~~P~~MGe~FKVl~i~~k~ 475 (483)
|+++.|+.+|+.||++|||.+|++.+....++++...++++++||++ |.+|||+||||+++++.
T Consensus 297 --g~~~~~~~tQ~~FLl~~Gl~~rl~~l~~~~~~~~~~~~~~~v~rLi~--------------p~~MGelFkVl~~~k~~ 360 (370)
T COG1565 297 --GLEVLGFKTQGDFLLDLGLLERLATLSAGKDDARYLKIAAQVKRLIS--------------PGGMGELFKVLAFGKKL 360 (370)
T ss_pred --CCcccchhhHHHHHHhccHHHHHHHHhcCCChHHHHHHHHHHHHhhC--------------chhhccceeeeeecccc
Confidence 69999999999999999999999999766677888999999999999 99999999999996554
Q ss_pred C
Q 011546 476 Q 476 (483)
Q Consensus 476 ~ 476 (483)
.
T Consensus 361 ~ 361 (370)
T COG1565 361 K 361 (370)
T ss_pred c
Confidence 4
No 2
>KOG2901 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.1e-84 Score=642.63 Aligned_cols=391 Identities=56% Similarity=0.911 Sum_probs=357.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCccCCCChhHHHHHHHHHHHHHH
Q 011546 73 PPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCL 152 (483)
Q Consensus 73 ~~~~~~~~~~~~~L~~~i~~~I~~~~GpIsf~~FM~~aLY~P~~GYY~~~~~~G~~GDFiTSpeIs~~FGe~Ia~~i~~~ 152 (483)
||.++++ +...|.++|...|+.. ||||+++||..||.||..|||+++++||++|||||||||||+|||||++|.+..
T Consensus 24 p~~~sp~--~t~~l~k~L~~ki~~s-gpi~vaeym~evLtnp~~gyy~~rdvfg~~gdfitSpeisq~fgeligvw~~~e 100 (415)
T KOG2901|consen 24 PPDHSPE--ETPHLVKHLKSKIKST-GPITVAEYMKEVLTNPKAGYYMNRDVFGAKGDFITSPEISQIFGEMIGVWTVSE 100 (415)
T ss_pred CCCCCcc--ccHHHHHHHHhhhhcc-CCccHHHHHHHHHhCcccceeccHHHhhcccCccCCccHHHHHHHhhheeEEEe
Confidence 4455544 3344999999999999 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcccccccCcCCcccceeeccCC
Q 011546 153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLA 232 (483)
Q Consensus 153 w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~~~~~~~~~~~~~~ 232 (483)
|+++|.|..+++||+||||||||.|+|+.+.++. -..+++||||.||.|.+.|.++|+++..++. .+.++++..
T Consensus 101 w~~~g~~~~~qLvelgpgrgtl~~dvl~~~~kf~--~~~vs~hLve~S~~ls~lq~~~l~~~~~~~s----~~~~~tt~s 174 (415)
T KOG2901|consen 101 WEQMGRPERFQLVELGPGRGTLMADVLRVLTKFK--DEDLSVHLVEVSPALSKLQAQNLCCTDESLS----EYKKGSTLS 174 (415)
T ss_pred hhhhCCccceeEEEeccchhHHHHHHHHHHHHhc--CceeeEEEEEecHhHHHHhhcceeEeeccHH----HHhhccccc
Confidence 9999999999999999999999999999997765 3557999999999999999999998665432 277888999
Q ss_pred CCceeeccccccCCCCCCEEEEEecccccccceEEEEcCCeeEEEEEEEcCCCceEEEeCCCCChhhHHHHHHhhhhhcc
Q 011546 233 GTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADK 312 (483)
Q Consensus 233 ~~~v~W~~sl~~lp~~~~~iiiANEffDALPv~~f~~~~~~w~E~~V~~~~~~~f~~v~~p~~~~~~~~l~~~~~~~~~~ 312 (483)
+.+++||.+++++|.++ ++|+|||||||||||+|++..++|+|++|++..++.|+|+++|.++++..++.. .
T Consensus 175 g~~~~w~~sl~dvp~g~-s~iiahef~DalpVhkfqk~~~~w~eV~vd~~~d~~~rfvls~s~tp~~~~~~~-------~ 246 (415)
T KOG2901|consen 175 GTPIHWHRTLQDVPSGF-TLIIAHEFFDALPVHQFQKSTRGWCEVMVDVGEDSKFRFVLSPSPTPAALYLMP-------A 246 (415)
T ss_pred cCchhcccChhhcCCce-EEEEhHHhhhcCcchhhccCCCCcceeEEeccCcccEEEecCCCCChhhhcCCC-------C
Confidence 99999999999999995 999999999999999999999999999999999999999999999987553322 2
Q ss_pred cCCCCcEEEEchhHHHHHHHHHHHhccCCeEEEEEeCCCCCCcCCccceeccccccCCCCCCCccccccccCHHHHHHHH
Q 011546 313 ELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSA 392 (483)
Q Consensus 313 ~~~~g~~~Ei~~~a~~~l~~la~~l~~~~G~~LiIDYG~~~~~~gTLr~yr~H~~~dpl~~PG~~DITAhVdF~~L~~~a 392 (483)
.......+|.++.+..-+..++++|...||.+|+||||+.....+|+|+|++|+++|+|..||.+||||+|||+.++.+|
T Consensus 247 ~~e~r~~~e~~~es~~~v~~~~~ri~~~gG~Alivdygh~g~~TDtFRaf~~HKlhDvL~~pg~adLtadVdf~~~~~~a 326 (415)
T KOG2901|consen 247 TDETREKMEHSPESGKSVDLLAKRIGSDGGGALIIDYGHDGIKTDSFRAFKKHKLVDILDMPGSADLTADVDFTYLRHAA 326 (415)
T ss_pred CccchhheeecccccccHHHHHHHHhccCCeEEEEeccCCCccchHHHHhhhccchhhccCCCcccceeecchHHHHHhh
Confidence 23456788999999888889999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHhcCceeeeccccHHHHHHhCChHHHHHHHHhcC-CHHHHHHHHHHHhHhhcCCCCCCCCCCCCCCCCCCcccccEEEE
Q 011546 393 EEASERVSVHGPMTQSQFLGSLGINFRVESLLQNC-TEEQAESLRTGYWSLVGEGEAPFWEGPDEQAPIGMGTRYLAMAI 471 (483)
Q Consensus 393 ~~~g~g~~~~g~~tQ~~FL~~lGI~~rl~~L~~~~-~~~~~~~~~~~~~rLi~~~~~~~~~~~~~~~P~~MGe~FKVl~i 471 (483)
+. .+..+||++|+.||.+|||..||+.|++++ .+++++.++++|.+|++++++++|.++-..+|.+||.||..+..
T Consensus 327 ~~---~v~~~gp~~q~~fl~~~gI~~RLk~LL~~~n~~~~~eqL~~GY~mL~np~~mg~r~~~~a~~p~~~G~r~~~~~~ 403 (415)
T KOG2901|consen 327 EG---NVDKNGPRKQHCFLNGMGIEIRLKILLDKSNEPSQQEQLLQGYDMLMNPKKMGERFNFFALLPHQQGGRYQANLC 403 (415)
T ss_pred cc---ceeecCchhhhhHHhcccchhhHHHHHHhcCCHHHHHHHHHhHHHhcChhhcccccChHHhCccccchHHHHhhh
Confidence 83 699999999999999999999999999999 66899999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCC
Q 011546 472 VNKNQGVPVPFE 483 (483)
Q Consensus 472 ~~k~~~~~~gF~ 483 (483)
.+|+.+.++||+
T Consensus 404 ~~kp~~~vagFs 415 (415)
T KOG2901|consen 404 QSKPASPVAGFS 415 (415)
T ss_pred hcCCCCCCCCCC
Confidence 888876788995
No 3
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=100.00 E-value=4.9e-58 Score=452.81 Aligned_cols=245 Identities=39% Similarity=0.691 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHcCCCC-CcEEEEEcCCcchhHHHHHHHHhc-CcCccccceEEEEecChhhHHHHHHhcccccccCcCC
Q 011546 144 MVGVWAMCLWEQMGQPN-RVNLVELGPGRGTLMADLLRGASK-FKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNAND 221 (483)
Q Consensus 144 ~Ia~~i~~~w~~~g~p~-~~~IvEiGaG~GtLa~DIL~~l~~-~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~~~ 221 (483)
|||+|++++|+++|.|. +++|||+|||+|+||.|||+++++ .|+++++++|+|||+||.||++|+++|+....+
T Consensus 1 ~ia~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~---- 76 (252)
T PF02636_consen 1 LIARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPK---- 76 (252)
T ss_dssp HHHHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH-------
T ss_pred ChHHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhccc----
Confidence 79999999999999997 499999999999999999999987 499999999999999999999999999764211
Q ss_pred cccceeeccCCCCceeeccccccCCCCCCEEEEEecccccccceEEEEcCCeeEEEEEEEc--CCCceEEEeCCCCChhh
Q 011546 222 NVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIA--EDSSFRFVLSPQPTPAT 299 (483)
Q Consensus 222 ~~~~~~~~~~~~~~v~W~~sl~~lp~~~~~iiiANEffDALPv~~f~~~~~~w~E~~V~~~--~~~~f~~v~~p~~~~~~ 299 (483)
....+.+|.|+++++++| .+|||||||||||||||+|++++++|+|++|+++ .+++|.|+.+|.+++..
T Consensus 77 -------~~~~~~~i~w~~~l~~~p--~~~~iiaNE~~DAlP~~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~p~~~~~~ 147 (252)
T PF02636_consen 77 -------DTEFGDPIRWLDDLEEVP--FPGFIIANELFDALPVDRFRKQEGGWRERYVDIDEEKNGRFCFVLSPLSTPSL 147 (252)
T ss_dssp -------STTTCGCEEEESSGGCS---CCEEEEEESSGGGS--EEEEEETTEEEEEEEEE---TTS-EEEEEESSSSTCH
T ss_pred -------ccccCCccchhhhhhccc--CCEEEEEeeehhcCceeEEEEcCCeEEEEEEEeccccCCceEEEeCCCCCHHH
Confidence 122345899999998887 4899999999999999999999999999999997 46789999888777542
Q ss_pred H-HHHHHhhhhhcccCCCCcEEEEchhHHHHHHHHHHHhccCCeEEEEEeCCCCC-CcCCccceecccccc-CCCCCCCc
Q 011546 300 L-FLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNG-VVTDSLQAIRKHKFV-DLFDNPGS 376 (483)
Q Consensus 300 ~-~l~~~~~~~~~~~~~~g~~~Ei~~~a~~~l~~la~~l~~~~G~~LiIDYG~~~-~~~gTLr~yr~H~~~-dpl~~PG~ 376 (483)
. ++......+ ...++|+++|||+++..|+++|++++.+ +|++|+||||++. ..+||||||++|+.+ |||.+||+
T Consensus 148 ~~~l~~~~~~~--~~~~~g~~~Ei~~~~~~~l~~l~~~~~~-~g~~l~iDYG~~~~~~~~tLr~~~~H~~~~~~l~~pG~ 224 (252)
T PF02636_consen 148 EEYLPQLGPRL--PKLPEGYRIEIPTGALQWLEQLAERLPK-GGALLIIDYGYPAEENNGTLRAYYKHRVVDDPLENPGE 224 (252)
T ss_dssp CCCTTCCGGG-------TT-EEEE-HCHHHHHHHHHHHCCC--EEEEEEEEEESCHHTT-S-EEESSSSEES-TTSSTTS
T ss_pred HHHHHHhhHhh--ccCCCCCEEEECHHHHHHHHHHHHHHhh-CCEEEEEeCCCCCCCcCCCEEEEeCCcccCChhhCCCc
Confidence 2 221111100 0124899999999999999999999997 7999999999943 588999999999998 99999999
Q ss_pred cccccccCHHHHHHHHHHhcCceeeeccc
Q 011546 377 ADLSAYVDFASISHSAEEASERVSVHGPM 405 (483)
Q Consensus 377 ~DITAhVdF~~L~~~a~~~g~g~~~~g~~ 405 (483)
+||||||||++|++++++. .|++++|||
T Consensus 225 ~DITa~VdF~~L~~~~~~~-~g~~~~g~~ 252 (252)
T PF02636_consen 225 QDITAHVDFSALKRAAREA-SGLEVLGPV 252 (252)
T ss_dssp SEEE--EEHHHHHHHHHHC-TT-EEEEEE
T ss_pred ccCchhccHHHHHHHHHhc-cCCEEeCCC
Confidence 9999999999999999765 279999986
No 4
>PHA03412 putative methyltransferase; Provisional
Probab=96.87 E-value=0.0038 Score=62.05 Aligned_cols=70 Identities=23% Similarity=0.185 Sum_probs=49.2
Q ss_pred CCCCCCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhH
Q 011546 125 FGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ 204 (483)
Q Consensus 125 ~G~~GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr 204 (483)
-.+.|.|+|+++|...+ + +|. .. ..+|+|+|||+|.|+..+.+.....+ ..+++.||+++...
T Consensus 27 ~~~~GqFfTP~~iAr~~----~-----i~~-~~---~grVLDlG~GSG~Lalala~~~~~~~----~~~V~aVEID~~Al 89 (241)
T PHA03412 27 NSELGAFFTPIGLARDF----T-----IDA-CT---SGSVVDLCAGIGGLSFAMVHMMMYAK----PREIVCVELNHTYY 89 (241)
T ss_pred cccCCccCCCHHHHHHH----H-----Hhc-cC---CCEEEEccChHHHHHHHHHHhcccCC----CcEEEEEECCHHHH
Confidence 34679999999976543 1 121 12 24999999999999998876542211 34899999999987
Q ss_pred HHHHHhc
Q 011546 205 KLQHHNL 211 (483)
Q Consensus 205 ~~Q~~~L 211 (483)
+.-++.+
T Consensus 90 ~~Ar~n~ 96 (241)
T PHA03412 90 KLGKRIV 96 (241)
T ss_pred HHHHhhc
Confidence 6665543
No 5
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=96.60 E-value=0.015 Score=54.18 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=36.1
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
-+|+|+|||+|.++.-+++. . ...+++.+|+|+...+..++++..
T Consensus 33 ~~vLDlG~G~G~i~~~la~~---~----~~~~v~~vDi~~~a~~~a~~n~~~ 77 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKR---G----PDAKVTAVDINPDALELAKRNAER 77 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHT---S----TCEEEEEEESBHHHHHHHHHHHHH
T ss_pred CeEEEecCChHHHHHHHHHh---C----CCCEEEEEcCCHHHHHHHHHHHHh
Confidence 48999999999999877642 2 234699999999998888887754
No 6
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.43 E-value=0.019 Score=56.11 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=37.8
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
..+|+|+|||+|.++..+++.+. . ...+++-||+|+.+.+.-++++..
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~-~----p~~~v~gvD~s~~ml~~a~~~~~~ 101 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNIN-Q----PNVKIIGIDNSQPMVERCRQHIAA 101 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcC-C----CCCeEEEEeCCHHHHHHHHHHHHh
Confidence 35899999999999988876532 1 235899999999998887777753
No 7
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.16 E-value=0.02 Score=57.21 Aligned_cols=44 Identities=30% Similarity=0.523 Sum_probs=37.4
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 160 ~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
....|+|+|||.|.|..-+++.. -+++.||+.+.+.+.=++++.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~---------~~v~~vE~d~~~~~~L~~~~~ 73 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG---------KRVIAVEIDPDLAKHLKERFA 73 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS---------SEEEEEESSHHHHHHHHHHCT
T ss_pred CCCEEEEeCCCCccchhhHhccc---------CcceeecCcHhHHHHHHHHhh
Confidence 44699999999999999998753 278999999999888877765
No 8
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=95.95 E-value=0.06 Score=53.23 Aligned_cols=48 Identities=15% Similarity=0.269 Sum_probs=37.1
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
..+|+|+|||+|.++..+++.+. . ...+++.||+||.+.+.=++++..
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~-~----~~~~v~gvD~S~~ml~~A~~~~~~ 104 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIH-H----DNCKIIAIDNSPAMIERCRRHIDA 104 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcC-C----CCCeEEEEeCCHHHHHHHHHHHHh
Confidence 35899999999998887765432 1 234899999999999887777643
No 9
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=95.93 E-value=0.046 Score=54.55 Aligned_cols=43 Identities=23% Similarity=0.484 Sum_probs=36.0
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
.-+|+|+|||.|+|...+++. ..+++.||+++.+.+..++++.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~---------~~~v~~vEid~~~~~~l~~~~~ 72 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKR---------AKKVYAIELDPRLAEFLRDDEI 72 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHh---------CCEEEEEECCHHHHHHHHHHhc
Confidence 358999999999999998763 1268999999999998888774
No 10
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.83 E-value=0.068 Score=51.63 Aligned_cols=44 Identities=27% Similarity=0.195 Sum_probs=34.3
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
.-+|+|+|||+|.+...+.+.+ | ..+++-||+|+.+.+.-++++
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~---~----~~~v~giDiS~~~l~~A~~~~ 87 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLL---P----FKHIYGVEINEYAVEKAKAYL 87 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhC---C----CCeEEEEECCHHHHHHHHhhC
Confidence 4589999999999888875432 2 247999999999888777655
No 11
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=95.83 E-value=0.061 Score=52.99 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=38.8
Q ss_pred HHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 151 CLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 151 ~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
.+...++....-+|+|+|||+|.++..+.+. .| ..+++-||+|+.+.+.-++++
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~---~~----~~~v~gvD~s~~~i~~a~~~~ 75 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVER---WP----AARITGIDSSPAMLAEARSRL 75 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHH---CC----CCEEEEEECCHHHHHHHHHhC
Confidence 3444455444569999999999998777543 22 237999999999887766554
No 12
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=95.72 E-value=0.052 Score=49.21 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=36.4
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
..+|+|+|||+|.++..+++. .....+|+-||+|+.+-+.-+++++.
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~------~~~~~~i~gvD~s~~~i~~a~~~~~~ 50 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKE------LNPGAKIIGVDISEEMIEYAKKRAKE 50 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHH------STTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEEecCcCcHHHHHHHHh------cCCCCEEEEEECcHHHHHHhhccccc
Confidence 469999999999999988752 12244799999999998888876643
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=95.72 E-value=0.46 Score=49.43 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=62.4
Q ss_pred CChHHHHHHHHHHHhhcCCcccHHHHHHHhh-cCCCCcccCCCCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHcCC-
Q 011546 81 KLESELVKHLKGIIKFRGGPISVAEYMEEVL-TNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQ- 158 (483)
Q Consensus 81 ~~~~~L~~~i~~~I~~~~GpIsf~~FM~~aL-Y~P~~GYY~~~~~~G~~GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~- 158 (483)
.+...+.+-|+..-... +++.+... .|-.+|||.... ...| |.+.-...+..+++..+.
T Consensus 52 ~~~~~~~~~i~~~Yd~~------~~~~e~~~g~~~h~g~~~~~~---~~~~----------~~~aq~~~~~~~l~~~~~~ 112 (340)
T PLN02244 52 AATADLKEGIAEFYDES------SGVWEDVWGEHMHHGYYDPGA---SRGD----------HRQAQIRMIEESLAWAGVP 112 (340)
T ss_pred cchhhHHHHHHHHHccc------hHHHHHHhCCcceeeccCCCC---Cccc----------HHHHHHHHHHHHHHhcCCC
Confidence 34455666555554332 34444433 233479997532 1111 334444444555555555
Q ss_pred ----CCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 159 ----PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 159 ----p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
...-+|+|+|||.|.++..+.+.. ..+++-||+|+.+.+.-+++..
T Consensus 113 ~~~~~~~~~VLDiGCG~G~~~~~La~~~--------g~~v~gvD~s~~~i~~a~~~~~ 162 (340)
T PLN02244 113 DDDEKRPKRIVDVGCGIGGSSRYLARKY--------GANVKGITLSPVQAARANALAA 162 (340)
T ss_pred cccCCCCCeEEEecCCCCHHHHHHHHhc--------CCEEEEEECCHHHHHHHHHHHH
Confidence 334689999999999988776532 2378999999998776665543
No 14
>PHA03411 putative methyltransferase; Provisional
Probab=95.54 E-value=0.077 Score=54.00 Aligned_cols=99 Identities=23% Similarity=0.333 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEE
Q 011546 85 ELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNL 164 (483)
Q Consensus 85 ~L~~~i~~~I~~~~GpIsf~~FM~~aLY~P~~GYY~~~~~~G~~GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~I 164 (483)
.|-+.+-..|... ..++..+ .+-.|+ .|+... ++..|-|+|+..|-..| ++ . ..+ .-+|
T Consensus 10 ~l~~~~~~l~~~~-~~~~~~~--~~~v~~----~~~g~~-~~~~G~FfTP~~i~~~f--~~-------~---~~~-~grV 68 (279)
T PHA03411 10 KLHDRVMELINSD-RPLTYEE--KEFCYN----NYHGDG-LGGSGAFFTPEGLAWDF--TI-------D---AHC-TGKV 68 (279)
T ss_pred HHHHHHHHHHhCC-cccccCc--HHHHHH----hccccc-ccCceeEcCCHHHHHHH--Hh-------c---ccc-CCeE
Confidence 3445555555554 4444331 222222 333322 67789999999995444 11 1 111 2389
Q ss_pred EEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 165 VELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 165 vEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
+|+|||+|.+...+++. .+ ..+++.||+||.+.+.-++++
T Consensus 69 LDLGcGsGilsl~la~r---~~----~~~V~gVDisp~al~~Ar~n~ 108 (279)
T PHA03411 69 LDLCAGIGRLSFCMLHR---CK----PEKIVCVELNPEFARIGKRLL 108 (279)
T ss_pred EEcCCCCCHHHHHHHHh---CC----CCEEEEEECCHHHHHHHHHhC
Confidence 99999999987776543 11 247999999999888766654
No 15
>PRK06202 hypothetical protein; Provisional
Probab=95.52 E-value=0.13 Score=50.04 Aligned_cols=49 Identities=24% Similarity=0.357 Sum_probs=37.1
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 160 ~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
.+.+|+|+|||+|.++.-+.+..+... ...+++-||+||.+.+.-+++.
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g---~~~~v~gvD~s~~~l~~a~~~~ 108 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDG---LRLEVTAIDPDPRAVAFARANP 108 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCC---CCcEEEEEcCCHHHHHHHHhcc
Confidence 446999999999999888777654321 1247999999999987766554
No 16
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.40 E-value=0.12 Score=51.25 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=38.8
Q ss_pred HHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 150 MCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 150 ~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
..++..++ +.+.+|+|+|||+|.++..+.+. ..+++.||+|+.+.+.-++++.
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~---------g~~v~~vD~s~~~l~~a~~~~~ 87 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL---------GHQVILCDLSAEMIQRAKQAAE 87 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc---------CCEEEEEECCHHHHHHHHHHHH
Confidence 34445554 34569999999999988777542 1378999999999887766664
No 17
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=95.38 E-value=0.048 Score=50.58 Aligned_cols=49 Identities=22% Similarity=0.445 Sum_probs=38.3
Q ss_pred HcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 155 ~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
..+....-+|+|+|||+|.|+.-+++. ..+++.||+++.+.+.-++++.
T Consensus 8 ~~~~~~~~~vLEiG~G~G~lt~~l~~~---------~~~v~~vE~~~~~~~~~~~~~~ 56 (169)
T smart00650 8 AANLRPGDTVLEIGPGKGALTEELLER---------AARVTAIEIDPRLAPRLREKFA 56 (169)
T ss_pred hcCCCCcCEEEEECCCccHHHHHHHhc---------CCeEEEEECCHHHHHHHHHHhc
Confidence 344444458999999999999998763 1378999999999888777764
No 18
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=95.23 E-value=0.073 Score=53.64 Aligned_cols=43 Identities=28% Similarity=0.484 Sum_probs=36.6
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
.-+|+|||||.|.|-.-+++.. -+++-||+.+.|...-++++.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~---------~~v~aiEiD~~l~~~L~~~~~ 73 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA---------ARVTAIEIDRRLAEVLKERFA 73 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc---------CeEEEEEeCHHHHHHHHHhcc
Confidence 4699999999999999988642 158889999999999888875
No 19
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=95.23 E-value=0.04 Score=46.38 Aligned_cols=45 Identities=24% Similarity=0.358 Sum_probs=31.8
Q ss_pred EEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 164 LVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 164 IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
|+|+|||+|+....+++.+..- ...+++.||+|+.+-+.=+++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~----~~~~~~gvD~s~~~l~~~~~~~~ 45 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAG----PSSRVIGVDISPEMLELAKKRFS 45 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-HHHHHHHHHHSH
T ss_pred CEEeecCCcHHHHHHHHHhhhc----ccceEEEEECCHHHHHHHHHhch
Confidence 7999999999999998875211 12589999999999777666664
No 20
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.21 E-value=0.16 Score=49.00 Aligned_cols=59 Identities=12% Similarity=0.190 Sum_probs=41.6
Q ss_pred HHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 148 WAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 148 ~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
|...+.+.++.+..-+|+|+|||+|.++..+.+.+. ...+++-||+||.+.+.-++++.
T Consensus 33 ~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~------~~~~v~gvD~s~~~~~~a~~~~~ 91 (231)
T TIGR02752 33 WRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVG------PEGHVIGLDFSENMLSVGRQKVK 91 (231)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhC------CCCEEEEEECCHHHHHHHHHHHH
Confidence 333344445544446999999999999988876432 23479999999998777666654
No 21
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=95.20 E-value=0.058 Score=55.10 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=36.3
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
.+|+|+|||+|+.+.-+++.+.. ..+|+-||+|+.+-+.=+++|.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS~~mL~~a~~~l~ 109 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ------PARYVPIDISADALKESAAALA 109 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc------CCeEEEEECCHHHHHHHHHHHH
Confidence 58999999999999999987642 2479999999998666555554
No 22
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=95.18 E-value=0.048 Score=46.13 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=35.9
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
-+|+|+|||+|.++..+++.. ...+++-||+||.+.+.-++++
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~-------~~~~v~gvD~s~~~~~~a~~~~ 45 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLF-------PGARVVGVDISPEMLEIARERA 45 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHH-------TTSEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEEcCcCCHHHHHHHhcC-------CCCEEEEEeCCHHHHHHHHHHH
Confidence 489999999999999988722 2237999999999999888887
No 23
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=95.15 E-value=0.0052 Score=51.40 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=30.3
Q ss_pred EEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 165 VELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 165 vEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
+|+|||+|.+...|++.+ ...+|+.||+||.+-+.=++++.
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~~~l~~a~~~~~ 41 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISPSMLERARERLA 41 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSSSTTSTTCCCHH
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECCHHHHHHHHHHhh
Confidence 699999999999998764 34589999999998744444443
No 24
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=95.06 E-value=0.18 Score=48.39 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 147 VWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 147 ~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
.++.......+.+...+|+|+|||+|.++.-+++. ..+|+.||+|+.+.+.-++++.
T Consensus 50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~---------~~~v~~~D~s~~~i~~a~~~~~ 106 (230)
T PRK07580 50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARR---------GAKVVASDISPQMVEEARERAP 106 (230)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc---------CCEEEEEECCHHHHHHHHHHHH
Confidence 34445554434444569999999999988776531 1259999999999777766654
No 25
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=95.02 E-value=0.084 Score=50.44 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 144 MVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 144 ~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
.++..+++.+.......+.+|+|+|||+|.+...+++.. | ..+++.||+|+.+.+.-++++.
T Consensus 18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~---~----~~~~~~~D~~~~~~~~~~~~~~ 79 (240)
T TIGR02072 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF---P----QAEFIALDISAGMLAQAKTKLS 79 (240)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC---C----CCcEEEEeChHHHHHHHHHhcC
Confidence 455556666654432344689999999999887775532 2 2368999999998877666553
No 26
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=94.84 E-value=0.15 Score=48.02 Aligned_cols=49 Identities=22% Similarity=0.409 Sum_probs=36.4
Q ss_pred CCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 157 g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
+.+..-+|+|+|||+|.++..+++. .| ..+++.||+|+.+.+.-++++.
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~---~~----~~~v~~vD~s~~~~~~a~~n~~ 76 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQ---FP----SLQVTAIERNPDALRLIKENRQ 76 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHH---CC----CCEEEEEECCHHHHHHHHHHHH
Confidence 4444469999999999999988753 22 3479999999987666555543
No 27
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=94.62 E-value=0.26 Score=47.50 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=35.1
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 160 ~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
...+|+|+|||.|.++.-+... ..+++-||+||.+...-++++.
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~---------~~~v~gvD~s~~~i~~a~~~~~ 98 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR---------GAIVKAVDISEQMVQMARNRAQ 98 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHH
Confidence 3469999999999988776531 1268999999999988888775
No 28
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=94.51 E-value=0.24 Score=48.98 Aligned_cols=54 Identities=24% Similarity=0.356 Sum_probs=38.8
Q ss_pred HHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 011546 149 AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (483)
Q Consensus 149 i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~ 209 (483)
+..+...++....-+|+|+|||+|.++..+.+. .| ..+++-||+||.+-+.-++
T Consensus 18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~---~p----~~~v~gvD~s~~~~~~a~~ 71 (255)
T PRK14103 18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARR---WP----GAVIEALDSSPEMVAAARE 71 (255)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHH---CC----CCEEEEEECCHHHHHHHHh
Confidence 445555566545569999999999998877553 23 2378999999998765443
No 29
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.41 E-value=0.28 Score=48.55 Aligned_cols=46 Identities=22% Similarity=0.423 Sum_probs=35.6
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 160 ~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
...+|+|+|||+|.++..++... | ..+++.+|+|+...+.-++++.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~---~----~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKER---P----DAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHHH
Confidence 34689999999999988887653 2 3479999999988776666554
No 30
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=94.40 E-value=0.11 Score=52.42 Aligned_cols=67 Identities=24% Similarity=0.386 Sum_probs=46.9
Q ss_pred CCCCCCCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhh
Q 011546 124 VFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (483)
Q Consensus 124 ~~G~~GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L 203 (483)
.+|. .|++.+.+- .++++. ++....-+|+|+|||+|.++.-+++.. . +++.||+|+.+
T Consensus 19 ~~gq--~fl~~~~i~--------~~i~~~---l~~~~~~~VLEiG~G~G~lt~~L~~~~-------~--~v~avE~d~~~ 76 (272)
T PRK00274 19 SLGQ--NFLIDENIL--------DKIVDA---AGPQPGDNVLEIGPGLGALTEPLLERA-------A--KVTAVEIDRDL 76 (272)
T ss_pred ccCc--CcCCCHHHH--------HHHHHh---cCCCCcCeEEEeCCCccHHHHHHHHhC-------C--cEEEEECCHHH
Confidence 4664 488888752 333332 233233589999999999999887641 1 68999999999
Q ss_pred HHHHHHhcc
Q 011546 204 QKLQHHNLK 212 (483)
Q Consensus 204 r~~Q~~~L~ 212 (483)
.+.-++++.
T Consensus 77 ~~~~~~~~~ 85 (272)
T PRK00274 77 APILAETFA 85 (272)
T ss_pred HHHHHHhhc
Confidence 888777653
No 31
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=94.40 E-value=0.12 Score=44.03 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=37.7
Q ss_pred HcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 155 ~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
.++.+..-+|+|+|||.|.++..+++.. | ..+++-||+|+.+.+.=++++.
T Consensus 14 ~~~~~~~~~vldlG~G~G~~~~~l~~~~---~----~~~v~~vD~s~~~~~~a~~~~~ 64 (124)
T TIGR02469 14 KLRLRPGDVLWDIGAGSGSITIEAARLV---P----NGRVYAIERNPEALRLIERNAR 64 (124)
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHHC---C----CceEEEEcCCHHHHHHHHHHHH
Confidence 3444434599999999999999987642 2 2479999999998777555553
No 32
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.36 E-value=0.16 Score=48.80 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=35.7
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
-+|+|+|||+|.++.-+.+.+. ..-+++-||+|+.+.+.-++++..
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~------~~g~V~~iD~~~~~~~~a~~~l~~ 119 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIE------RRGKVYTVEIVKELAIYAAQNIER 119 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcC------CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 5899999999999877765432 122789999999998877777753
No 33
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=94.32 E-value=0.11 Score=51.54 Aligned_cols=48 Identities=29% Similarity=0.478 Sum_probs=36.3
Q ss_pred cCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 156 ~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
.+....-+|+|+|||+|.|..-+++.. + .++.||+++.+.+.-++++.
T Consensus 25 ~~~~~~~~VLEiG~G~G~lt~~L~~~~---~------~v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 25 ANVLEGDVVLEIGPGLGALTEPLLKRA---K------KVTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred cCCCCcCEEEEeCCCCCHHHHHHHHhC---C------cEEEEECCHHHHHHHHHHhC
Confidence 343334589999999999999887642 1 48899999999877666553
No 34
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=94.05 E-value=0.18 Score=45.09 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=30.0
Q ss_pred CCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 011546 159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (483)
Q Consensus 159 p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (483)
+...+|+|+|||.|.++.-+ +..+ .+++-||+|+.+.+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l----~~~~-----~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRAL----AKRG-----FEVTGVDISPQMIEK 59 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHH----HHTT-----SEEEEEESSHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHH----HHhC-----CEEEEEECCHHHHhh
Confidence 44569999999999876665 2221 289999999998777
No 35
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=93.93 E-value=0.61 Score=48.00 Aligned_cols=70 Identities=16% Similarity=0.360 Sum_probs=45.5
Q ss_pred CCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 011546 129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (483)
Q Consensus 129 GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~ 208 (483)
+-|+.-|+.-.+--..+..|+ ... + +.+|+|+|||+|.++.-+... .| ..+++-||+|+..-+.-+
T Consensus 109 ~vlipr~~te~lv~~~l~~~~----~~~--~-~~~VLDlG~GsG~iai~la~~---~p----~~~V~avDis~~al~~A~ 174 (307)
T PRK11805 109 RVLVPRSPIAELIEDGFAPWL----EDP--P-VTRILDLCTGSGCIAIACAYA---FP----DAEVDAVDISPDALAVAE 174 (307)
T ss_pred CCcCCCCchHHHHHHHHHHHh----ccC--C-CCEEEEEechhhHHHHHHHHH---CC----CCEEEEEeCCHHHHHHHH
Confidence 457766666443333332221 111 1 248999999999998887653 22 347899999999888777
Q ss_pred Hhcc
Q 011546 209 HNLK 212 (483)
Q Consensus 209 ~~L~ 212 (483)
+++.
T Consensus 175 ~n~~ 178 (307)
T PRK11805 175 INIE 178 (307)
T ss_pred HHHH
Confidence 7664
No 36
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=93.81 E-value=0.67 Score=47.07 Aligned_cols=71 Identities=14% Similarity=0.268 Sum_probs=46.4
Q ss_pred CCCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 011546 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (483)
Q Consensus 128 ~GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (483)
.|-|+.-|+.-.+.-+.+..|+ .. ..+.+|+|+|||+|.++.-+.+.. | ..+++-||+|+..-+.-
T Consensus 96 ~~vlipr~~te~lv~~~l~~~~-----~~--~~~~~vLDlG~GsG~i~~~la~~~---~----~~~v~avDis~~al~~A 161 (284)
T TIGR03533 96 ERVLIPRSPIAELIEDGFAPWL-----EP--EPVKRILDLCTGSGCIAIACAYAF---P----EAEVDAVDISPDALAVA 161 (284)
T ss_pred CCCccCCCchHHHHHHHHHHHh-----cc--CCCCEEEEEeCchhHHHHHHHHHC---C----CCEEEEEECCHHHHHHH
Confidence 3667766666444433332221 11 123589999999999988886532 2 24789999999987776
Q ss_pred HHhcc
Q 011546 208 HHNLK 212 (483)
Q Consensus 208 ~~~L~ 212 (483)
++++.
T Consensus 162 ~~n~~ 166 (284)
T TIGR03533 162 EINIE 166 (284)
T ss_pred HHHHH
Confidence 66654
No 37
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=93.69 E-value=0.29 Score=51.19 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=35.3
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
-+|+|+|||.|.++.-+++. .| ..+++.||+|+.+-+.-++++..
T Consensus 198 g~VLDlGCG~G~ls~~la~~---~p----~~~v~~vDis~~Al~~A~~nl~~ 242 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARH---SP----KIRLTLSDVSAAALESSRATLAA 242 (342)
T ss_pred CeEEEeccCcCHHHHHHHHh---CC----CCEEEEEECCHHHHHHHHHHHHH
Confidence 48999999999998877653 23 24799999999887777777753
No 38
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=93.55 E-value=0.21 Score=48.42 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=37.2
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
.-+|+|+|||+|.++.-+.+.+. ...+++-||++|.+.+.-++++..
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~------~~~~V~~vE~~~~~~~~a~~~l~~ 123 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVG------KSGKVVTIERIPELAEKAKKTLKK 123 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcC------CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 35999999999999977765432 123789999999999988888753
No 39
>PRK08317 hypothetical protein; Provisional
Probab=93.48 E-value=0.31 Score=46.29 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=37.9
Q ss_pred HHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 011546 154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (483)
Q Consensus 154 ~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~ 210 (483)
+.++.....+|+|+|||+|.++..+.+.+. ...+++-||+|+.+.+..+++
T Consensus 13 ~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~------~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 13 ELLAVQPGDRVLDVGCGPGNDARELARRVG------PEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred HHcCCCCCCEEEEeCCCCCHHHHHHHHhcC------CCcEEEEEeCCHHHHHHHHHH
Confidence 344544456999999999999998876431 234799999999987766655
No 40
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=93.42 E-value=0.23 Score=47.20 Aligned_cols=46 Identities=22% Similarity=0.396 Sum_probs=35.4
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 160 ~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
+.+.|+|+|||+|-+.+.||+.-- ..-...+||.|+..-..-.++.
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv------~~~~L~~iE~~~dF~~~L~~~~ 93 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGV------RPESLTAIEYSPDFVCHLNQLY 93 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCC------CccceEEEEeCHHHHHHHHHhC
Confidence 346899999999999999997531 1126789999999877766554
No 41
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=93.37 E-value=0.18 Score=51.25 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=49.2
Q ss_pred CCCCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 011546 127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (483)
Q Consensus 127 ~~GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (483)
..|-|||+.+|..+..+++ .....-+|++..||+|.|...+.+.++....-....+++-+|+++.....
T Consensus 24 ~~G~~~TP~~i~~l~~~~~-----------~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~l 92 (311)
T PF02384_consen 24 KLGQFYTPREIVDLMVKLL-----------NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVAL 92 (311)
T ss_dssp SCGGC---HHHHHHHHHHH-----------TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHH
T ss_pred ccceeehHHHHHHHHHhhh-----------hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHH
Confidence 4689999999987765555 21123479999999999999999887532212234578899999998877
Q ss_pred HHHhc
Q 011546 207 QHHNL 211 (483)
Q Consensus 207 Q~~~L 211 (483)
-+-+|
T Consensus 93 a~~nl 97 (311)
T PF02384_consen 93 AKLNL 97 (311)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 66554
No 42
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=93.31 E-value=0.18 Score=48.33 Aligned_cols=67 Identities=13% Similarity=0.195 Sum_probs=46.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 134 SPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 134 SpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
..+--|.+|.+...|.-- .+.+ .-+|+|+|||+|.++..+.+. .| ..+++-||+|+.+.+..++++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~----~~~~-~~~VLDiGcGtG~~~~~la~~---~p----~~~v~gVD~s~~~i~~a~~~~~ 85 (202)
T PRK00121 19 IEELWPRLSPAPLDWAEL----FGND-APIHLEIGFGKGEFLVEMAKA---NP----DINFIGIEVHEPGVGKALKKIE 85 (202)
T ss_pred hcccchhhcCCCCCHHHH----cCCC-CCeEEEEccCCCHHHHHHHHH---CC----CccEEEEEechHHHHHHHHHHH
Confidence 334446666666655322 2222 348999999999999888653 23 2379999999999888877764
No 43
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=93.31 E-value=0.76 Score=44.03 Aligned_cols=69 Identities=25% Similarity=0.252 Sum_probs=44.6
Q ss_pred CCCCCCCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhh
Q 011546 124 VFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (483)
Q Consensus 124 ~~G~~GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L 203 (483)
+++ .|.++++|++-... .+ .+......+|+|+|||+|.++. +|..+. . +++.||+|+.+
T Consensus 54 ~~~-~~~~~~~p~~~~~l--------~~---~l~~~~~~~VLeiG~GsG~~t~-~la~~~------~--~v~~vd~~~~~ 112 (212)
T PRK00312 54 PIG-CGQTISQPYMVARM--------TE---LLELKPGDRVLEIGTGSGYQAA-VLAHLV------R--RVFSVERIKTL 112 (212)
T ss_pred cCC-CCCeeCcHHHHHHH--------HH---hcCCCCCCEEEEECCCccHHHH-HHHHHh------C--EEEEEeCCHHH
Confidence 444 35677777764222 11 2233234699999999999886 433221 1 58899999999
Q ss_pred HHHHHHhccc
Q 011546 204 QKLQHHNLKC 213 (483)
Q Consensus 204 r~~Q~~~L~~ 213 (483)
.+.-++++..
T Consensus 113 ~~~a~~~~~~ 122 (212)
T PRK00312 113 QWEAKRRLKQ 122 (212)
T ss_pred HHHHHHHHHH
Confidence 8887777753
No 44
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=93.29 E-value=0.34 Score=51.42 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=34.8
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
-+|+|+|||+|.++.-+.+. .|. .+++.||+|+..-+.-++++.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~---~P~----~~V~~vD~S~~Av~~A~~N~~ 273 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDK---NPQ----AKVVFVDESPMAVASSRLNVE 273 (378)
T ss_pred CeEEEEeccccHHHHHHHHh---CCC----CEEEEEECCHHHHHHHHHHHH
Confidence 48999999999988766542 342 479999999988888777774
No 45
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=93.07 E-value=0.23 Score=50.85 Aligned_cols=44 Identities=23% Similarity=0.430 Sum_probs=35.8
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
.-+|+|+|||.|.|..-++.. ..+++-||+++.+.+.-++++..
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~---------~~~V~avEiD~~li~~l~~~~~~ 80 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQL---------AKKVIAIEIDPRMVAELKKRFQN 80 (294)
T ss_pred cCEEEEecCchHHHHHHHHHh---------CCcEEEEECCHHHHHHHHHHHHh
Confidence 358999999999999887653 12689999999999988887753
No 46
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=92.94 E-value=0.21 Score=54.85 Aligned_cols=83 Identities=22% Similarity=0.337 Sum_probs=55.7
Q ss_pred CCCCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCcc-ccceEEEEecChhhHH
Q 011546 127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFT-ESLHIHLVECSPTLQK 205 (483)
Q Consensus 127 ~~GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~-~~l~y~iVE~Sp~Lr~ 205 (483)
+.|-|||++.|....-+++ .............+|+|.+||+|.|...+++.+....... -...++.+|+++.+-.
T Consensus 2 ~~GqfyTP~~ia~~mv~~~----~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~ 77 (524)
T TIGR02987 2 AYGTFFTPPDIAKAMVANL----VNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLK 77 (524)
T ss_pred CCcccCCcHHHHHHHHHHH----hhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHH
Confidence 3689999999966544433 2221111111346999999999999999998875321111 1357889999999988
Q ss_pred HHHHhccc
Q 011546 206 LQHHNLKC 213 (483)
Q Consensus 206 ~Q~~~L~~ 213 (483)
.=+..|..
T Consensus 78 ~a~~~l~~ 85 (524)
T TIGR02987 78 RAKKLLGE 85 (524)
T ss_pred HHHHHHhh
Confidence 77777653
No 47
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=92.91 E-value=0.61 Score=45.29 Aligned_cols=45 Identities=20% Similarity=0.400 Sum_probs=35.5
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
+.+|+|+|||+|.++..+++.. | ..+++.||+|+.+.+.-++++.
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~---~----~~~v~~iD~~~~~~~~a~~~~~ 132 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKER---P----DARVTAVDISPEALAVARKNAA 132 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHHH
Confidence 3589999999999988887542 2 2478999999999887766654
No 48
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=92.89 E-value=0.62 Score=42.10 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=36.5
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 011546 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (483)
Q Consensus 160 ~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~ 210 (483)
...+||++|+|.|.|..-+...+.+. ...++++-||.++.+.+.=+++
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~---~~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNS---SPNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhc---CCCCeEEEEECCcHHHHHHHHH
Confidence 45799999999999999887766543 2346899999999885543333
No 49
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=92.84 E-value=0.9 Score=48.23 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 148 WAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 148 ~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
.+..+.+.++....-+|+|+|||.|.++.-+.+. . ..+++-||+|+.+.+.-+++..
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~---~-----g~~V~giDlS~~~l~~A~~~~~ 211 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEH---Y-----GVSVVGVTISAEQQKLAQERCA 211 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHH---C-----CCEEEEEeCCHHHHHHHHHHhc
Confidence 3334445556544469999999999998776542 1 2378999999998887776653
No 50
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=92.79 E-value=0.51 Score=37.93 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=30.4
Q ss_pred EEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 165 VELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 165 vEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
+|+|||.|..+.-+... ...+|+-+|+|+.+.+.-++++.
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~~~~~~~~~~~~~ 40 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDISEEMLEQARKRLK 40 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-HHHHHHHHHHTT
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeCCHHHHHHHHhccc
Confidence 69999999998888653 23489999999998777777664
No 51
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=92.77 E-value=0.37 Score=48.28 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=33.9
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~ 210 (483)
.+|+|+|||+|.++..+.+.+... ...+++-||+|+.+.+.-+++
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~----~~~~v~giD~s~~~l~~A~~~ 131 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEI----TTMQLFGLDISKVAIKYAAKR 131 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccc----cCCeEEEECCCHHHHHHHHHh
Confidence 589999999999999987654321 123688999999987765544
No 52
>PRK14967 putative methyltransferase; Provisional
Probab=92.75 E-value=0.61 Score=45.22 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=32.5
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
-+|+|+|||+|.++..+.+. + ..+++.||+|+.+.+.-++++.
T Consensus 38 ~~vLDlGcG~G~~~~~la~~----~----~~~v~~vD~s~~~l~~a~~n~~ 80 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAA----G----AGSVTAVDISRRAVRSARLNAL 80 (223)
T ss_pred CeEEEecCCHHHHHHHHHHc----C----CCeEEEEECCHHHHHHHHHHHH
Confidence 58999999999987766431 1 1278999999988777666553
No 53
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=92.64 E-value=0.53 Score=43.88 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=32.8
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
-+|+|+|||+|.++..+.+. . . +++.||+||.+.+.=++++.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~---~----~--~v~~vD~s~~~~~~a~~~~~ 62 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGK---G----K--CILTTDINPFAVKELRENAK 62 (179)
T ss_pred CeEEEeCCChhHHHHHHHhc---C----C--EEEEEECCHHHHHHHHHHHH
Confidence 48999999999988877642 1 1 78999999999777666554
No 54
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=92.64 E-value=0.62 Score=46.44 Aligned_cols=45 Identities=22% Similarity=0.377 Sum_probs=35.5
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
+.+++|+|||+|.++.-+.+.. + ..+++.||+||..-+..++++.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~---~----~~~v~~vDis~~al~~A~~N~~ 131 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL---D----GIELHAADIDPAAVRCARRNLA 131 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC---C----CCEEEEEECCHHHHHHHHHHHH
Confidence 3589999999999998876542 2 2368999999999888777764
No 55
>PRK07402 precorrin-6B methylase; Provisional
Probab=92.52 E-value=0.35 Score=45.88 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=35.1
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
.-+|+|+|||+|.++..+.+. .| ..+++.||+||.+.+.-++++.
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~---~~----~~~V~~vD~s~~~~~~a~~n~~ 85 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLL---CP----KGRVIAIERDEEVVNLIRRNCD 85 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHH---CC----CCEEEEEeCCHHHHHHHHHHHH
Confidence 358999999999998887542 22 2378999999999887777664
No 56
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=92.52 E-value=0.53 Score=45.05 Aligned_cols=76 Identities=11% Similarity=0.094 Sum_probs=48.5
Q ss_pred CCCCccCCCChhHHHHHHHHHHHHHHHHH-cCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 011546 127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQ-MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK 205 (483)
Q Consensus 127 ~~GDFiTSpeIs~~FGe~Ia~~i~~~w~~-~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~ 205 (483)
+.+++++.+...+++-+-+ ++...- .-.|...+|+|+|||+|.++.-+.+. .| ..+++.||+|+.+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~----~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~---~~----~~~V~giD~s~~~l~ 83 (187)
T PRK00107 15 KKYNLTAIRDPEELWERHI----LDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIA---RP----ELKVTLVDSLGKKIA 83 (187)
T ss_pred ccccccccCCHHHHHHHHH----HHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHH---CC----CCeEEEEeCcHHHHH
Confidence 4567777777665433322 221111 11222468999999999988887653 22 348999999999887
Q ss_pred HHHHhccc
Q 011546 206 LQHHNLKC 213 (483)
Q Consensus 206 ~Q~~~L~~ 213 (483)
.=+++++.
T Consensus 84 ~A~~~~~~ 91 (187)
T PRK00107 84 FLREVAAE 91 (187)
T ss_pred HHHHHHHH
Confidence 76666543
No 57
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=92.44 E-value=0.58 Score=47.67 Aligned_cols=52 Identities=23% Similarity=0.380 Sum_probs=40.7
Q ss_pred HHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcccc
Q 011546 154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCM 214 (483)
Q Consensus 154 ~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~~ 214 (483)
+....-..-.|+|+|||+|.|..-+|+.-+ +++-+|+.|.|...-+++.++.
T Consensus 52 ~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k---------kVvA~E~Dprmvael~krv~gt 103 (315)
T KOG0820|consen 52 EKADLKPTDVVLEVGPGTGNLTVKLLEAGK---------KVVAVEIDPRMVAELEKRVQGT 103 (315)
T ss_pred hccCCCCCCEEEEeCCCCCHHHHHHHHhcC---------eEEEEecCcHHHHHHHHHhcCC
Confidence 333332345899999999999999998643 5788999999999888888763
No 58
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=92.43 E-value=0.95 Score=45.79 Aligned_cols=54 Identities=11% Similarity=0.302 Sum_probs=41.4
Q ss_pred cCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 011546 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (483)
Q Consensus 156 ~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~ 210 (483)
++.+...+++++++|+|..|.-||++....+.. ...++.++++||.+-+.=+++
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~-~~~~V~v~Dinp~mL~vgkqR 149 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGD-RESKVTVLDINPHMLAVGKQR 149 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCC-CCceEEEEeCCHHHHHHHHHH
Confidence 444455799999999999999999998764432 234899999999996664443
No 59
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=92.42 E-value=0.36 Score=45.94 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=40.2
Q ss_pred HcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 155 ~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
+++.+..-+|+|+|||+|.++..+++.+. ...+++-||+|+.+.+.-++++..
T Consensus 35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~------~~~~v~avD~~~~~~~~a~~n~~~ 87 (198)
T PRK00377 35 KLRLRKGDMILDIGCGTGSVTVEASLLVG------ETGKVYAVDKDEKAINLTRRNAEK 87 (198)
T ss_pred HcCCCCcCEEEEeCCcCCHHHHHHHHHhC------CCCEEEEEECCHHHHHHHHHHHHH
Confidence 34555556999999999999998876542 224799999999998877766643
No 60
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=92.41 E-value=0.49 Score=45.63 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=36.4
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
.-+|+|+|||+|.++.-+.+... ...+++-||++|.+.+.-++++..
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~------~~g~V~~vD~~~~~~~~A~~~~~~ 124 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVG------RDGLVVSIERIPELAEKAERRLRK 124 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 45999999999999987655321 123689999999999888777753
No 61
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=92.26 E-value=0.52 Score=45.07 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=35.3
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
..+|+|+|||+|.++..++... | ...+++.+|+|+.+.+.-++++.
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~---~---~~~~v~~~D~s~~~~~~a~~~~~ 97 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAV---G---KTGEVVGLDFSEGMLAVGREKLR 97 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHc---C---CCCeEEEEeCCHHHHHHHHHhhc
Confidence 3699999999999988887653 2 13589999999988666555553
No 62
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=91.96 E-value=0.48 Score=44.93 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=32.9
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
.+|+|+|||+|.++.-+... .| ..+++.||+|+.+.+.-++.++
T Consensus 44 ~~vLDiGcGtG~~s~~la~~---~~----~~~V~~iD~s~~~~~~a~~~~~ 87 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIA---RP----ELKLTLLESNHKKVAFLREVKA 87 (181)
T ss_pred CeEEEecCCCCccHHHHHHH---CC----CCeEEEEeCcHHHHHHHHHHHH
Confidence 59999999999988877532 22 2478999999988766555543
No 63
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=91.84 E-value=0.24 Score=43.66 Aligned_cols=39 Identities=28% Similarity=0.531 Sum_probs=30.7
Q ss_pred HHHH-HHHHHHHHHHHHcCCC-CCcEEEEEcCCcchhHHHH
Q 011546 140 MFGE-MVGVWAMCLWEQMGQP-NRVNLVELGPGRGTLMADL 178 (483)
Q Consensus 140 ~FGe-~Ia~~i~~~w~~~g~p-~~~~IvEiGaG~GtLa~DI 178 (483)
+|=. .||.+++.+|+.+-.+ .+...|++|||+|-|..=+
T Consensus 36 VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL 76 (112)
T PF07757_consen 36 VFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYIL 76 (112)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHH
Confidence 5543 5899999999988766 5578999999999876433
No 64
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=91.80 E-value=0.65 Score=51.12 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=35.5
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
+.+|+|+|||+|.++..++..+ | ..+++.||+||..-+.-++++.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~---p----~~~v~avDis~~al~~A~~N~~ 183 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL---P----NANVIATDISLDAIEVAKSNAI 183 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC---C----CCeEEEEECCHHHHHHHHHHHH
Confidence 3589999999999998886542 3 2478999999988777777664
No 65
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=91.79 E-value=1.1 Score=44.94 Aligned_cols=58 Identities=19% Similarity=0.372 Sum_probs=39.2
Q ss_pred HHHHHHHHHcC-CCCC--cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 011546 147 VWAMCLWEQMG-QPNR--VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (483)
Q Consensus 147 ~~i~~~w~~~g-~p~~--~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~ 209 (483)
+|+...|..+- .+.+ .+|+|+|||-|-....||++-.+ +++.++-.+.||.-.+.=++
T Consensus 55 ~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n-----~~l~v~acDfsp~Ai~~vk~ 115 (264)
T KOG2361|consen 55 NWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPN-----NRLKVYACDFSPRAIELVKK 115 (264)
T ss_pred HHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCC-----CCeEEEEcCCChHHHHHHHh
Confidence 45555554432 2222 28999999999999999876322 34678889999986655444
No 66
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=91.77 E-value=1.9 Score=43.60 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=35.1
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
.+|+|+|||+|.++..+.... | ..+++.||+|+...+.-++++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~---~----~~~v~avDis~~al~~a~~n~~ 159 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF---P----NAEVIAVDISPDALAVAEENAE 159 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHHH
Confidence 489999999999988886542 2 2479999999988877777664
No 67
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=91.72 E-value=0.37 Score=45.86 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=33.8
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
-.|+|+|||+|.++..+++. +|+ .+++-||+|+.+-+.-++++.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~---~p~----~~v~gvD~~~~~l~~a~~~~~ 61 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQ---NPD----KNFLGIEIHTPIVLAANNKAN 61 (194)
T ss_pred ceEEEeCCCccHHHHHHHHh---CCC----CCEEEEEeeHHHHHHHHHHHH
Confidence 38999999999999888653 343 378999999988766555543
No 68
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=91.67 E-value=0.39 Score=40.90 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=37.5
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
.+|+|+|||+|++..-+++.. ..+++-||++|...+.-+.++..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--------~~~~~gvdi~~~~~~~a~~~~~~ 45 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--------AARVTGVDIDPEAVELARRNLPR 45 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--------TCEEEEEESSHHHHHHHHHHCHH
T ss_pred CEEEEcCcchHHHHHHHHHHC--------CCeEEEEEECHHHHHHHHHHHHH
Confidence 489999999999999888752 34899999999999998888754
No 69
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=91.58 E-value=1.3 Score=44.24 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=40.9
Q ss_pred cCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 156 ~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
++.....+|+++|||+|.+|..+.+.. + ..+++.+++|+.|-+.=++++..
T Consensus 47 ~~~~~g~~vLDva~GTGd~a~~~~k~~---g----~g~v~~~D~s~~ML~~a~~k~~~ 97 (238)
T COG2226 47 LGIKPGDKVLDVACGTGDMALLLAKSV---G----TGEVVGLDISESMLEVAREKLKK 97 (238)
T ss_pred hCCCCCCEEEEecCCccHHHHHHHHhc---C----CceEEEEECCHHHHHHHHHHhhc
Confidence 454345799999999999998886643 2 45899999999999998888864
No 70
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=91.51 E-value=0.83 Score=44.84 Aligned_cols=42 Identities=12% Similarity=0.155 Sum_probs=31.6
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
.-+|+|+|||+|.++..+.+ . ..+++.||+||.+.+.-+++.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~----~-----~~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRE----R-----GSQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHH----c-----CCeEEEEECCHHHHHHHHhhC
Confidence 35899999999998765532 1 137899999999887766554
No 71
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=91.47 E-value=0.72 Score=43.60 Aligned_cols=53 Identities=15% Similarity=0.254 Sum_probs=37.6
Q ss_pred HHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 153 w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
......+...+|+|+|||.|.+...+++.. | ...+++.+|+|+.+.+.=++++
T Consensus 32 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~---~---~~~~~~~iD~~~~~~~~~~~~~ 84 (223)
T TIGR01934 32 VKLIGVFKGQKVLDVACGTGDLAIELAKSA---P---DRGKVTGVDFSSEMLEVAKKKS 84 (223)
T ss_pred HHHhccCCCCeEEEeCCCCChhHHHHHHhc---C---CCceEEEEECCHHHHHHHHHHh
Confidence 333444345699999999999988887653 2 1247999999998866655544
No 72
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=91.30 E-value=2 Score=43.01 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=34.5
Q ss_pred CCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 157 g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
+.+...+|+|+|||+|.++..+.+.. + ...+++-||+|+.+-+.-+++.
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~---~---~~~~V~gvD~S~~ml~~A~~r~ 118 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKV---G---SDGKVMGLDFSSEQLAVAASRQ 118 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHh---C---CCCEEEEEECCHHHHHHHHHHh
Confidence 33344699999999999876654432 1 1237889999999987765554
No 73
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=91.11 E-value=3.7 Score=41.25 Aligned_cols=124 Identities=13% Similarity=0.083 Sum_probs=70.6
Q ss_pred CChHHHHHHHHHHHhhcCCcccHHHHHHHhhcCCCCcccC---CCCCCCCCCCccCCCChhHHHHHHHHHHHHHHHH-Hc
Q 011546 81 KLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYI---NRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWE-QM 156 (483)
Q Consensus 81 ~~~~~L~~~i~~~I~~~~GpIsf~~FM~~aLY~P~~GYY~---~~~~~G~~GDFiTSpeIs~~FGe~Ia~~i~~~w~-~~ 156 (483)
.+...|...|...++.. |--++++|.+....++...=.. ..--++. ..|+=-|+ .| +.+..++...+. ..
T Consensus 22 ~k~~~l~~rl~~r~~~~-~~~~~~~y~~~l~~~~~~~e~~~l~~~lti~~-T~FfR~~~---~~-~~l~~~vlp~l~~~~ 95 (264)
T smart00138 22 YKRTLLQSRLSRRLRVL-GLKDFSEYLELLTSHRGEEELAELLDLMTTNE-TRFFRESK---HF-EALEEKVLPLLIASR 95 (264)
T ss_pred chHHHHHHHHHHHHHHc-CCCCHHHHHHHHhcCCcHHHHHHHHHHhhcCC-CcccCCcH---HH-HHHHHHHhHHHHHhc
Confidence 35678999999999998 7778999999988775211110 0011222 23333222 22 223444433332 22
Q ss_pred CCCCCcEEEEEcCCcchhHHHHHHHHhc-CcCc-cccceEEEEecChhhHHHHHHh
Q 011546 157 GQPNRVNLVELGPGRGTLMADLLRGASK-FKNF-TESLHIHLVECSPTLQKLQHHN 210 (483)
Q Consensus 157 g~p~~~~IvEiGaG~GtLa~DIL~~l~~-~p~~-~~~l~y~iVE~Sp~Lr~~Q~~~ 210 (483)
....+++|+++|||+|.-+.-|.-.+.+ .+.. ....+++-+|+|+.+-+.-++.
T Consensus 96 ~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 96 RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred CCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 2334589999999999743333222221 2211 1235889999999876655543
No 74
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=90.55 E-value=1 Score=48.85 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCC-CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhH
Q 011546 139 QMFGEMVGVWAMCLWEQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ 204 (483)
Q Consensus 139 ~~FGe~Ia~~i~~~w~~~g~p-~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr 204 (483)
..|.++|...+.+..+..... ....|+.+|||||-|..-.+++.+... .+.+++-||.||...
T Consensus 164 ~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~---~a~~VyAVEkn~~A~ 227 (448)
T PF05185_consen 164 DQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAG---GAVKVYAVEKNPNAV 227 (448)
T ss_dssp HHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHC---CESEEEEEESSTHHH
T ss_pred HHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhC---CCeEEEEEcCCHhHH
Confidence 567888877777665544321 246899999999999998888875422 356899999999644
No 75
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=90.39 E-value=0.7 Score=44.11 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=32.8
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
+-+|+|+|||+|.++.-+.+. ..+++-||+|+.+.+.-++++.
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~---------g~~V~gvD~S~~~i~~a~~~~~ 73 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN---------GFDVTAWDKNPMSIANLERIKA 73 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC---------CCEEEEEeCCHHHHHHHHHHHH
Confidence 358999999999988776531 1278999999998777665553
No 76
>PRK00811 spermidine synthase; Provisional
Probab=90.34 E-value=0.98 Score=45.85 Aligned_cols=73 Identities=21% Similarity=0.346 Sum_probs=49.5
Q ss_pred CCCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 011546 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (483)
Q Consensus 128 ~GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (483)
.|..-|+-.---.|=|+++.-.+. -.|.+-+|+++|+|.|.++..+|+. + ...++..||++|.+.+.-
T Consensus 49 Dg~~q~~~~de~~Y~e~l~h~~~~-----~~~~p~~VL~iG~G~G~~~~~~l~~----~---~~~~V~~VEid~~vv~~a 116 (283)
T PRK00811 49 DGCVMTTERDEFIYHEMMTHVPLF-----AHPNPKRVLIIGGGDGGTLREVLKH----P---SVEKITLVEIDERVVEVC 116 (283)
T ss_pred CCeeeecCcchhhHHHHhhhHHHh-----hCCCCCEEEEEecCchHHHHHHHcC----C---CCCEEEEEeCCHHHHHHH
Confidence 455555533334556666543221 1344569999999999999988752 2 123799999999998888
Q ss_pred HHhcc
Q 011546 208 HHNLK 212 (483)
Q Consensus 208 ~~~L~ 212 (483)
++.+.
T Consensus 117 ~~~~~ 121 (283)
T PRK00811 117 RKYLP 121 (283)
T ss_pred HHHhH
Confidence 87764
No 77
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=90.25 E-value=0.89 Score=45.52 Aligned_cols=66 Identities=14% Similarity=0.273 Sum_probs=45.0
Q ss_pred CCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 011546 129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (483)
Q Consensus 129 GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~ 208 (483)
.||+.+-.+-.. ..+...++.+...+|+|+|||+|.++..+... . ..+++.||+|+.+.+.-+
T Consensus 30 ~~~~~~gg~~~~---------~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~---~-----~~~v~giD~s~~~~~~a~ 92 (263)
T PTZ00098 30 EDYISSGGIEAT---------TKILSDIELNENSKVLDIGSGLGGGCKYINEK---Y-----GAHVHGVDICEKMVNIAK 92 (263)
T ss_pred CCCCCCCchHHH---------HHHHHhCCCCCCCEEEEEcCCCChhhHHHHhh---c-----CCEEEEEECCHHHHHHHH
Confidence 367666555432 22333455555579999999999988766431 1 247999999999987777
Q ss_pred Hhc
Q 011546 209 HNL 211 (483)
Q Consensus 209 ~~L 211 (483)
++.
T Consensus 93 ~~~ 95 (263)
T PTZ00098 93 LRN 95 (263)
T ss_pred HHc
Confidence 655
No 78
>PRK05785 hypothetical protein; Provisional
Probab=90.19 E-value=0.84 Score=44.72 Aligned_cols=41 Identities=10% Similarity=0.226 Sum_probs=31.6
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~ 209 (483)
+-+|+|+|||+|.++..+.+.. ..+++-||+|+.|.+.-++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--------~~~v~gvD~S~~Ml~~a~~ 92 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--------KYYVVALDYAENMLKMNLV 92 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--------CCEEEEECCCHHHHHHHHh
Confidence 3599999999999887765432 1378999999999776554
No 79
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.08 E-value=2.1 Score=41.45 Aligned_cols=44 Identities=18% Similarity=0.325 Sum_probs=35.1
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
-.|+++|||+|.|+...+ ++.+-++.=||+.|..-+.-+++...
T Consensus 47 ~~V~DlG~GTG~La~ga~--------~lGa~~V~~vdiD~~a~ei~r~N~~~ 90 (198)
T COG2263 47 KTVLDLGAGTGILAIGAA--------LLGASRVLAVDIDPEALEIARANAEE 90 (198)
T ss_pred CEEEEcCCCcCHHHHHHH--------hcCCcEEEEEecCHHHHHHHHHHHHh
Confidence 379999999999998764 33444788899999998888877653
No 80
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=90.05 E-value=0.85 Score=45.81 Aligned_cols=72 Identities=19% Similarity=0.348 Sum_probs=46.1
Q ss_pred CCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 011546 129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (483)
Q Consensus 129 GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~ 208 (483)
|..-++..--..|=|+++.--+ +..|.+-+|+++|+|.|.++..+++.. ...++++||+++.+.+.-+
T Consensus 46 g~~q~~~~~e~~y~e~l~~~~l-----~~~~~p~~VL~iG~G~G~~~~~ll~~~-------~~~~v~~veid~~vi~~a~ 113 (270)
T TIGR00417 46 GVVQTTERDEFIYHEMIAHVPL-----FTHPNPKHVLVIGGGDGGVLREVLKHK-------SVEKATLVDIDEKVIELSK 113 (270)
T ss_pred CcccccCchHHHHHHHhhhhHh-----hcCCCCCEEEEEcCCchHHHHHHHhCC-------CcceEEEEeCCHHHHHHHH
Confidence 4444442222345666654211 123344599999999999988887531 2237999999999987777
Q ss_pred Hhcc
Q 011546 209 HNLK 212 (483)
Q Consensus 209 ~~L~ 212 (483)
+.+.
T Consensus 114 ~~~~ 117 (270)
T TIGR00417 114 KFLP 117 (270)
T ss_pred HHhH
Confidence 6663
No 81
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=89.89 E-value=1.3 Score=45.21 Aligned_cols=95 Identities=18% Similarity=0.276 Sum_probs=61.7
Q ss_pred HHHHHHHhhcCCCCcccCCCCCCC------CCCCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHH
Q 011546 103 VAEYMEEVLTNPKAGFYINRDVFG------AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMA 176 (483)
Q Consensus 103 f~~FM~~aLY~P~~GYY~~~~~~G------~~GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~ 176 (483)
++++.++-+-+-..=|--....|| +.|=||-=||. |.+-.|+++...+...-.+..|+|+|+|+|.++.
T Consensus 90 i~~~~~~R~~r~PlQYIlg~~~F~~l~l~~~pgVlIPRpET-----EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIsl 164 (328)
T KOG2904|consen 90 IRWACLQRYKRMPLQYILGSQPFGDLDLVCKPGVLIPRPET-----EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISL 164 (328)
T ss_pred HHHHHHHHHhcCChhheeccCccCCceEEecCCeeecCccH-----HHHHHHHHHHHhhhhhcccceEEEecCCccHHHH
Confidence 444444333332233333444565 46778877886 4455666776666555555689999999999999
Q ss_pred HHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 011546 177 DLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (483)
Q Consensus 177 DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~ 209 (483)
.+|..+. ..++.-||.|++--+.-++
T Consensus 165 sll~~L~-------~~~v~AiD~S~~Ai~La~e 190 (328)
T KOG2904|consen 165 SLLHGLP-------QCTVTAIDVSKAAIKLAKE 190 (328)
T ss_pred HHHhcCC-------CceEEEEeccHHHHHHHHH
Confidence 9987543 4478889999986555433
No 82
>PRK04457 spermidine synthase; Provisional
Probab=89.53 E-value=0.7 Score=46.40 Aligned_cols=47 Identities=17% Similarity=0.358 Sum_probs=37.5
Q ss_pred CCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 159 p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
|.+-+|+|+|+|.|+++.-+++. .| ..+++.||++|.+.+.-++.+.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~---~p----~~~v~~VEidp~vi~~A~~~f~ 111 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTY---LP----DTRQTAVEINPQVIAVARNHFE 111 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHh---CC----CCeEEEEECCHHHHHHHHHHcC
Confidence 34458999999999999888764 23 3579999999999988777764
No 83
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=89.42 E-value=1.6 Score=41.80 Aligned_cols=62 Identities=13% Similarity=0.063 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHcC-CCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 142 GEMVGVWAMCLWEQMG-QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 142 Ge~Ia~~i~~~w~~~g-~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
......|+.+.+...+ .....+|+|+|||+|.++..+.+. . .+++.+|+|+.+.+.=++++.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~---~------~~v~~iD~s~~~~~~a~~~~~ 88 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL---G------ANVTGIDASEENIEVAKLHAK 88 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc---C------CeEEEEeCCHHHHHHHHHHHH
Confidence 3445567777665432 124569999999999988766442 1 258999999988665445443
No 84
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=89.13 E-value=2.8 Score=45.23 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=32.6
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 160 ~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
...+|+|+|||+|.++..+.... ..+++-||+|+.+.+..+++.
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~--------~~~v~gvDiS~~~l~~A~~~~ 309 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF--------DVHVVGIDLSVNMISFALERA 309 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc--------CCEEEEEECCHHHHHHHHHHh
Confidence 34599999999999876654321 237899999998877666554
No 85
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.10 E-value=1.1 Score=43.81 Aligned_cols=74 Identities=22% Similarity=0.280 Sum_probs=51.2
Q ss_pred cCC-CCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEE
Q 011546 119 YIN-RDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLV 197 (483)
Q Consensus 119 Y~~-~~~~G~~GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iV 197 (483)
|+. .-++| .|-++.+|.+- |+.+ +.+..-..-+|+|||+|+|..++=+-+ +- . +++-|
T Consensus 42 Y~d~~lpi~-~gqtis~P~~v-------A~m~----~~L~~~~g~~VLEIGtGsGY~aAvla~-l~------~--~V~si 100 (209)
T COG2518 42 YEDRALPIG-CGQTISAPHMV-------ARML----QLLELKPGDRVLEIGTGSGYQAAVLAR-LV------G--RVVSI 100 (209)
T ss_pred ccCCcccCC-CCceecCcHHH-------HHHH----HHhCCCCCCeEEEECCCchHHHHHHHH-Hh------C--eEEEE
Confidence 454 34687 78888888653 3222 222322335999999999997765533 21 1 78999
Q ss_pred ecChhhHHHHHHhccc
Q 011546 198 ECSPTLQKLQHHNLKC 213 (483)
Q Consensus 198 E~Sp~Lr~~Q~~~L~~ 213 (483)
|..+.|.+.-+++|..
T Consensus 101 Er~~~L~~~A~~~L~~ 116 (209)
T COG2518 101 ERIEELAEQARRNLET 116 (209)
T ss_pred EEcHHHHHHHHHHHHH
Confidence 9999999999988865
No 86
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=89.06 E-value=1.2 Score=43.53 Aligned_cols=52 Identities=23% Similarity=0.226 Sum_probs=36.5
Q ss_pred cCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 156 ~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
+.....-+++|+|+|+|.+++=+-.-... .-+++-||..|.|.+.=+++|..
T Consensus 68 L~l~pg~~VLeIGtGsGY~aAlla~lvg~------~g~Vv~vE~~~~l~~~A~~~l~~ 119 (209)
T PF01135_consen 68 LDLKPGDRVLEIGTGSGYQAALLAHLVGP------VGRVVSVERDPELAERARRNLAR 119 (209)
T ss_dssp TTC-TT-EEEEES-TTSHHHHHHHHHHST------TEEEEEEESBHHHHHHHHHHHHH
T ss_pred HhcCCCCEEEEecCCCcHHHHHHHHhcCc------cceEEEECccHHHHHHHHHHHHH
Confidence 33333469999999999988766543321 11688999999999998888864
No 87
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=88.72 E-value=2.1 Score=42.61 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=33.5
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
.-+|+|+|||+|.++.-+++.. ....+++-||+|+.+.+.-+++..
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~------g~~~~v~gvD~s~~~l~~A~~~~~ 123 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRV------GPTGKVIGVDMTPEMLAKARANAR 123 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHh------CCCCEEEEECCCHHHHHHHHHHHH
Confidence 3599999999998776554322 122368999999998887776653
No 88
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=88.67 E-value=1.1 Score=42.56 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=31.9
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
+.+|+|+|||+|.++.-+.+. ..+++-||+||.+.+.-+++.
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~---------g~~V~~iD~s~~~l~~a~~~~ 72 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA---------GYDVRAWDHNPASIASVLDMK 72 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC---------CCeEEEEECCHHHHHHHHHHH
Confidence 359999999999998877541 137899999998877655443
No 89
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=88.63 E-value=1.8 Score=43.71 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=32.1
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
-+|+|+|||+|.++.-+... ..+++-||+|+...+.-+++..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~---------g~~V~avD~s~~ai~~~~~~~~ 163 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALL---------GFDVTAVDINQQSLENLQEIAE 163 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHH
Confidence 48999999999988766431 1378999999998776655553
No 90
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=88.59 E-value=1.2 Score=46.39 Aligned_cols=46 Identities=24% Similarity=0.316 Sum_probs=34.2
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
.-+|+|+|||+|.++.-+.+... ..-.++-||+|+.+.+.-++++.
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~------~~g~VvgVDis~~~l~~Ar~~l~ 126 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVG------EKGLVVSVEYSRKICEIAKRNVR 126 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcC------CCCEEEEEECCHHHHHHHHHHHH
Confidence 35899999999999988765431 11257889999998776666554
No 91
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=88.49 E-value=0.77 Score=36.29 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=29.2
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 011546 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (483)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~ 208 (483)
+|+|+|||.|.++..++. ....+++.+|.|+......+
T Consensus 1 ~ildig~G~G~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~ 38 (107)
T cd02440 1 RVLDLGCGTGALALALAS--------GPGARVTGVDISPVALELAR 38 (107)
T ss_pred CeEEEcCCccHHHHHHhc--------CCCCEEEEEeCCHHHHHHHH
Confidence 489999999998777754 12348999999998766554
No 92
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=88.48 E-value=0.99 Score=45.55 Aligned_cols=50 Identities=24% Similarity=0.281 Sum_probs=35.0
Q ss_pred HHHHHHcCCC-CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecCh
Q 011546 150 MCLWEQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201 (483)
Q Consensus 150 ~~~w~~~g~p-~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp 201 (483)
+..+++.|.. ....+||+|||+|.|..-|-..+...+ .....|++||-..
T Consensus 7 i~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~--~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 7 IGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDK--PSNSRFVLIDRAS 57 (259)
T ss_pred HHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcc--cCCccEEEEecCc
Confidence 3445555653 456999999999999999988764321 1234799999754
No 93
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=88.38 E-value=2.2 Score=43.34 Aligned_cols=42 Identities=24% Similarity=0.458 Sum_probs=32.2
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
+|+|+|+|+|.+|.-+.... |+ .+++-+|+||.--+.-+++.
T Consensus 113 ~ilDlGTGSG~iai~la~~~---~~----~~V~a~Dis~~Al~~A~~Na 154 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG---PD----AEVIAVDISPDALALARENA 154 (280)
T ss_pred cEEEecCChHHHHHHHHhhC---cC----CeEEEEECCHHHHHHHHHHH
Confidence 89999999999998886543 32 48999999997655555444
No 94
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=88.35 E-value=2.5 Score=42.93 Aligned_cols=43 Identities=19% Similarity=0.352 Sum_probs=32.3
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
-+|+++|||+|.++..+++ .+ .-+++-||+||.+.+.-++++.
T Consensus 161 ~~VLDvGcGsG~lai~aa~----~g----~~~V~avDid~~al~~a~~n~~ 203 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALK----LG----AAKVVGIDIDPLAVESARKNAE 203 (288)
T ss_pred CEEEEeCCChhHHHHHHHH----cC----CCeEEEEECCHHHHHHHHHHHH
Confidence 5999999999998865532 11 1278999999998777666654
No 95
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=87.94 E-value=0.98 Score=44.72 Aligned_cols=89 Identities=20% Similarity=0.287 Sum_probs=58.1
Q ss_pred HHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcccccccCcCCcccceeecc
Q 011546 151 CLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISS 230 (483)
Q Consensus 151 ~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~~~~~~~~~~~~ 230 (483)
+++.+.+.-.+-+|+++|||.|..-.-+.+. +|+ ..+.=|+.||.|-+.-+++|-...-..
T Consensus 21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~R---wP~----A~i~GiDsS~~Mla~Aa~rlp~~~f~~------------ 81 (257)
T COG4106 21 DLLARVPLERPRRVVDLGCGPGNSTELLARR---WPD----AVITGIDSSPAMLAKAAQRLPDATFEE------------ 81 (257)
T ss_pred HHHhhCCccccceeeecCCCCCHHHHHHHHh---CCC----CeEeeccCCHHHHHHHHHhCCCCceec------------
Confidence 3444444434569999999999987776553 443 267889999999988888884210000
Q ss_pred CCCCceeeccccccCCCCCCEEEEEecccccccceE
Q 011546 231 LAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQ 266 (483)
Q Consensus 231 ~~~~~v~W~~sl~~lp~~~~~iiiANEffDALPv~~ 266 (483)
+.--.|. |+...-+|+||-+|-=||=|.
T Consensus 82 --aDl~~w~------p~~~~dllfaNAvlqWlpdH~ 109 (257)
T COG4106 82 --ADLRTWK------PEQPTDLLFANAVLQWLPDHP 109 (257)
T ss_pred --ccHhhcC------CCCccchhhhhhhhhhccccH
Confidence 0112342 333246999999998888664
No 96
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=87.91 E-value=2.1 Score=44.38 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=33.6
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
..+|+|+|||+|.++..+.+. ..+++-||+|+.+-+.-+++..
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~---------g~~V~gvD~S~~ml~~A~~~~~ 187 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE---------GAIVSASDISAAMVAEAERRAK 187 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHH
Confidence 469999999999998777642 1378999999998777666553
No 97
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=87.71 E-value=3.6 Score=42.30 Aligned_cols=90 Identities=17% Similarity=0.235 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcccccccCcCCcccce
Q 011546 147 VWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEER 226 (483)
Q Consensus 147 ~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~~~~~~~~ 226 (483)
+-|++++++...+. -+|+++|||+|-|+---+. +-+-++.-||+.|.-.+.-+++.....
T Consensus 149 ~lcl~~l~~~~~~g-~~vLDvG~GSGILaiaA~k--------lGA~~v~a~DiDp~Av~~a~~N~~~N~----------- 208 (295)
T PF06325_consen 149 RLCLELLEKYVKPG-KRVLDVGCGSGILAIAAAK--------LGAKKVVAIDIDPLAVEAARENAELNG----------- 208 (295)
T ss_dssp HHHHHHHHHHSSTT-SEEEEES-TTSHHHHHHHH--------TTBSEEEEEESSCHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHhccCC-CEEEEeCCcHHHHHHHHHH--------cCCCeEEEecCCHHHHHHHHHHHHHcC-----------
Confidence 44556666666655 3999999999999866543 122268889999987666565553210
Q ss_pred eeccCCCCceeeccccccCCCCCCEEEEEecccccc
Q 011546 227 TISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDAL 262 (483)
Q Consensus 227 ~~~~~~~~~v~W~~sl~~lp~~~~~iiiANEffDAL 262 (483)
-..++.+.. ..+.+....-+|+||=+.|-|
T Consensus 209 -----~~~~~~v~~-~~~~~~~~~dlvvANI~~~vL 238 (295)
T PF06325_consen 209 -----VEDRIEVSL-SEDLVEGKFDLVVANILADVL 238 (295)
T ss_dssp ------TTCEEESC-TSCTCCS-EEEEEEES-HHHH
T ss_pred -----CCeeEEEEE-ecccccccCCEEEECCCHHHH
Confidence 011344432 233333334688888665543
No 98
>PRK04266 fibrillarin; Provisional
Probab=87.40 E-value=1.9 Score=42.44 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=35.2
Q ss_pred HHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 011546 154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (483)
Q Consensus 154 ~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~ 210 (483)
+.++.....+|+|+|||+|.+...+.+... .-+++-||+|+.+-+...++
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-------~g~V~avD~~~~ml~~l~~~ 115 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVE-------EGVVYAVEFAPRPMRELLEV 115 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcC-------CCeEEEEECCHHHHHHHHHH
Confidence 445544446999999999999877765431 22789999999876644443
No 99
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=87.32 E-value=3.2 Score=43.56 Aligned_cols=44 Identities=14% Similarity=0.318 Sum_probs=32.8
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
..+|+|+|||+|.++.-+++.. +. .+++.||.|+.+.+.-+++.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~---~~----~~VtgVD~S~~mL~~A~~k~ 157 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV---DA----KNVTILDQSPHQLAKAKQKE 157 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHHhh
Confidence 3599999999999887775532 22 37999999999866655443
No 100
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=86.55 E-value=3 Score=43.34 Aligned_cols=50 Identities=24% Similarity=0.226 Sum_probs=37.2
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 160 ~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
....|||+|||+|+=..-+|+++.... ...+|+=||+|...-+.-.++|.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~---~~~~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQK---KSVDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcC---CCceEEEEECCHHHHHHHHHhhh
Confidence 345899999999999999999986321 23589999999765544444554
No 101
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=86.44 E-value=2.1 Score=44.50 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=31.2
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
.+|+|+|||.|.++.-+.+ . ..+++-||+|+.+.+.-+++.
T Consensus 133 ~~ILDIGCG~G~~s~~La~----~-----g~~V~GID~s~~~i~~Ar~~~ 173 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLAR----M-----GATVTGVDAVDKNVKIARLHA 173 (322)
T ss_pred CEEEEeeCCCCHHHHHHHH----c-----CCEEEEEeCCHHHHHHHHHHH
Confidence 5899999999998775542 1 137899999999877665543
No 102
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=86.34 E-value=1.6 Score=43.83 Aligned_cols=57 Identities=23% Similarity=0.359 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 142 Ge~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
|-+||.|+- .+..-+|+|+|+|+|.+..-+.. .. +..++..||+.+.+.++-++.++
T Consensus 33 aiLL~~~~~-------~~~~~~IlDlGaG~G~l~L~la~---r~----~~a~I~~VEiq~~~a~~A~~nv~ 89 (248)
T COG4123 33 AILLAAFAP-------VPKKGRILDLGAGNGALGLLLAQ---RT----EKAKIVGVEIQEEAAEMAQRNVA 89 (248)
T ss_pred HHHHHhhcc-------cccCCeEEEecCCcCHHHHHHhc---cC----CCCcEEEEEeCHHHHHHHHHHHH
Confidence 455776642 23356999999999998765532 11 22589999999999998877775
No 103
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=86.33 E-value=2.9 Score=40.70 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=38.3
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
-+|+|||.+.|.=+.-+.+++. +..+++.||.+|...+..++.++.
T Consensus 47 k~vLEIGt~~GySal~la~~l~------~~g~i~tiE~~~~~~~~A~~~~~~ 92 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALP------EDGKITTIEIDPERAEIARENFRK 92 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTST------TTSEEEEEESSHHHHHHHHHHHHH
T ss_pred ceEEEeccccccHHHHHHHhhc------ccceEEEecCcHHHHHHHHHHHHh
Confidence 3999999999998888877542 345899999999999998888864
No 104
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=86.19 E-value=2.8 Score=43.25 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 147 VWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 147 ~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
.-|++++++...+. -+++.+|||+|-|+--.+. +.+.+++-+++-|.--+.-+++..
T Consensus 150 ~lcL~~Le~~~~~g-~~vlDvGcGSGILaIAa~k--------LGA~~v~g~DiDp~AV~aa~eNa~ 206 (300)
T COG2264 150 SLCLEALEKLLKKG-KTVLDVGCGSGILAIAAAK--------LGAKKVVGVDIDPQAVEAARENAR 206 (300)
T ss_pred HHHHHHHHHhhcCC-CEEEEecCChhHHHHHHHH--------cCCceEEEecCCHHHHHHHHHHHH
Confidence 35667777777654 5999999999999877643 233468889998876555555443
No 105
>PRK14968 putative methyltransferase; Provisional
Probab=85.97 E-value=2.5 Score=38.89 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=32.2
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
-+|+|+|||+|.++..+++. ..+++.+|.||..-+.-++.+.
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~---------~~~v~~~D~s~~~~~~a~~~~~ 66 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKN---------GKKVVGVDINPYAVECAKCNAK 66 (188)
T ss_pred CEEEEEccccCHHHHHHHhh---------cceEEEEECCHHHHHHHHHHHH
Confidence 48999999999988887653 2378899999987665555553
No 106
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=85.92 E-value=1.4 Score=42.20 Aligned_cols=43 Identities=21% Similarity=0.412 Sum_probs=33.0
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
+|+|+|||.|.++..+.+. .| ..+++-||+|+.+.+.-++++.
T Consensus 2 ~vLDiGcG~G~~~~~la~~---~~----~~~v~gid~s~~~~~~a~~~~~ 44 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAER---HP----HLQLHGYTISPEQAEVGRERIR 44 (224)
T ss_pred eEEEECCCCCHHHHHHHHH---CC----CCEEEEEECCHHHHHHHHHHHH
Confidence 6999999999988877553 22 2478899999998777666653
No 107
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=85.63 E-value=2.4 Score=40.02 Aligned_cols=38 Identities=24% Similarity=0.184 Sum_probs=27.2
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (483)
-+|+|+|||+|.++.-+.+. . ..+++-||+|+.+.+.-
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~----~----~~~~~giD~s~~~i~~a 52 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDE----K----QVRGYGIEIDQDGVLAC 52 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhc----c----CCcEEEEeCCHHHHHHH
Confidence 48999999999987655432 1 12467899999876553
No 108
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=85.49 E-value=2.5 Score=41.91 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=31.3
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
-+|+++|||+|.|+..+.+ .. ..+++-||+||...+.-++++.
T Consensus 121 ~~VLDiGcGsG~l~i~~~~----~g----~~~v~giDis~~~l~~A~~n~~ 163 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAK----LG----AKKVLAVDIDPQAVEAARENAE 163 (250)
T ss_pred CEEEEeCCcHHHHHHHHHH----cC----CCeEEEEECCHHHHHHHHHHHH
Confidence 5999999999998765432 11 1258899999998776666554
No 109
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=85.39 E-value=1.5 Score=41.33 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhh
Q 011546 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (483)
Q Consensus 160 ~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L 203 (483)
..-+|+|+|||+|.++.-+.+... ...+++.||+||.+
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~------~~~~v~~vDis~~~ 69 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVG------GKGRVIAVDLQPMK 69 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhC------CCceEEEEeccccc
Confidence 345899999999999888876432 23368999999964
No 110
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=85.32 E-value=1.4 Score=39.09 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=32.8
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
.++++|||.|..+.-+++. .| ..+++.||++|.+.+.-+++++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~---~~----~~~v~~~E~~~~~~~~l~~~~~ 43 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK---GA----EGRVIAFEPLPDAYEILEENVK 43 (143)
T ss_pred CEEEccCCccHHHHHHHHh---CC----CCEEEEEecCHHHHHHHHHHHH
Confidence 4899999999987666542 22 2389999999999887666654
No 111
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=85.30 E-value=3.3 Score=42.71 Aligned_cols=75 Identities=25% Similarity=0.270 Sum_probs=50.9
Q ss_pred CCCCCccCCCChhH----HHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecCh
Q 011546 126 GAEGDFITSPEVSQ----MFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201 (483)
Q Consensus 126 G~~GDFiTSpeIs~----~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp 201 (483)
|...-|+|.|-+=+ -+|--+ +++.+..+..-+|+++|||.|.|..-+++. .| ..+++|||+|.
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~l------Ll~~l~~~~~~~vlDlGCG~Gvlg~~la~~---~p----~~~vtmvDvn~ 192 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRL------LLETLPPDLGGKVLDLGCGYGVLGLVLAKK---SP----QAKLTLVDVNA 192 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHH------HHHhCCccCCCcEEEeCCCccHHHHHHHHh---CC----CCeEEEEecCH
Confidence 77889999998711 222211 223334333348999999999999887653 33 35899999998
Q ss_pred hhHHHHHHhccc
Q 011546 202 TLQKLQHHNLKC 213 (483)
Q Consensus 202 ~Lr~~Q~~~L~~ 213 (483)
.--+.-++++..
T Consensus 193 ~Av~~ar~Nl~~ 204 (300)
T COG2813 193 RAVESARKNLAA 204 (300)
T ss_pred HHHHHHHHhHHH
Confidence 777776777753
No 112
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=84.81 E-value=2.8 Score=41.36 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=36.1
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
-+|+|+|+|+|.-+.-+.+++. ...+++-||++|...+.-++.+..
T Consensus 70 ~~vLEiGt~~G~s~l~la~~~~------~~g~v~tiD~d~~~~~~A~~n~~~ 115 (234)
T PLN02781 70 KNTLEIGVFTGYSLLTTALALP------EDGRITAIDIDKEAYEVGLEFIKK 115 (234)
T ss_pred CEEEEecCcccHHHHHHHHhCC------CCCEEEEEECCHHHHHHHHHHHHH
Confidence 3899999999997776765532 234799999999998888888754
No 113
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=83.96 E-value=5 Score=43.34 Aligned_cols=94 Identities=14% Similarity=0.207 Sum_probs=55.8
Q ss_pred HHHHHHHhhcCCCCcccCCCCCC-C-----CCCCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHH
Q 011546 103 VAEYMEEVLTNPKAGFYINRDVF-G-----AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMA 176 (483)
Q Consensus 103 f~~FM~~aLY~P~~GYY~~~~~~-G-----~~GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~ 176 (483)
|.+.++.-.-+...-|-.....| | ..|.|++.|+.-.+ ..++.... . ..-+|+|+|||+|.++.
T Consensus 198 ~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE~L-----Ve~aL~~l---~--~~~rVLDLGcGSG~Iai 267 (423)
T PRK14966 198 ADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETEHL-----VEAVLARL---P--ENGRVWDLGTGSGAVAV 267 (423)
T ss_pred HHHHHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCccHHHH-----HHHhhhcc---C--CCCEEEEEeChhhHHHH
Confidence 44444444444444454443322 2 24566666665433 33333222 1 22489999999999987
Q ss_pred HHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 177 DLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 177 DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
-+... .| ..+++-||+||.+-+.-++++..
T Consensus 268 aLA~~---~p----~a~VtAVDiS~~ALe~AreNa~~ 297 (423)
T PRK14966 268 TVALE---RP----DAFVRASDISPPALETARKNAAD 297 (423)
T ss_pred HHHHh---CC----CCEEEEEECCHHHHHHHHHHHHH
Confidence 76542 22 24789999999998887777643
No 114
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=83.88 E-value=6.4 Score=38.38 Aligned_cols=62 Identities=21% Similarity=0.404 Sum_probs=39.2
Q ss_pred CCCChhHHHHHHHHHHH-----HHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecCh
Q 011546 133 TSPEVSQMFGEMVGVWA-----MCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201 (483)
Q Consensus 133 TSpeIs~~FGe~Ia~~i-----~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp 201 (483)
+.|+.-..|...++..- ..+......+..-+||++|+|.|.++..+++. +|+ +++++.|.-.
T Consensus 68 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~---~P~----l~~~v~Dlp~ 134 (241)
T PF00891_consen 68 EDPELAKRFNAAMAEYSRLNAFDILLEAFDFSGFKTVVDVGGGSGHFAIALARA---YPN----LRATVFDLPE 134 (241)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTSSEEEEET-TTSHHHHHHHHH---STT----SEEEEEE-HH
T ss_pred hChHHHHHHHHHHHhhhhcchhhhhhccccccCccEEEeccCcchHHHHHHHHH---CCC----CcceeeccHh
Confidence 45666777777766542 11223344444458999999999999998753 554 4788887633
No 115
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=83.44 E-value=1.8 Score=41.94 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=27.1
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecCh
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp 201 (483)
.-+|+|+|||+|.++.-+++... ...+++-||+||
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~------~~~~V~aVDi~~ 86 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIG------DKGRVIACDILP 86 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcC------CCceEEEEeccc
Confidence 35899999999998887776431 223789999998
No 116
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=83.17 E-value=1.5 Score=43.12 Aligned_cols=47 Identities=17% Similarity=0.418 Sum_probs=36.6
Q ss_pred cCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccc---cceEEEEecChhhHHHHHHhccc
Q 011546 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTE---SLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 156 ~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~---~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
+|...+..++|+|||+|+ +++ ||. ..+++.||++|.|++.-.+..++
T Consensus 72 ~gk~~K~~vLEvgcGtG~----------Nfk-fy~~~p~~svt~lDpn~~mee~~~ks~~E 121 (252)
T KOG4300|consen 72 LGKSGKGDVLEVGCGTGA----------NFK-FYPWKPINSVTCLDPNEKMEEIADKSAAE 121 (252)
T ss_pred hcccCccceEEecccCCC----------Ccc-cccCCCCceEEEeCCcHHHHHHHHHHHhh
Confidence 455567899999999998 333 333 45899999999999998887754
No 117
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=83.00 E-value=4.7 Score=38.94 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=31.8
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
..+|+|+|||.|.++..+.+. ..+++.||+|+.+.+.-++++
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~---------~~~v~~iD~s~~~~~~a~~~~ 90 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL---------GADVTGIDASEENIEVARLHA 90 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc---------CCeEEEEcCCHHHHHHHHHHH
Confidence 468999999999988766542 136899999999866555544
No 118
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=82.68 E-value=2.6 Score=46.55 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhh
Q 011546 139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (483)
Q Consensus 139 ~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L 203 (483)
..|+++|-..+++.-..........|.=+|||||-|...+|++.+... .+++.++||.+|.-
T Consensus 346 ~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~---RkVklyavEKNPNA 407 (649)
T KOG0822|consen 346 DQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETD---RKVKLYAVEKNPNA 407 (649)
T ss_pred HHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhc---CceEEEEEecCcch
Confidence 456777766666653332222256888999999999999999987532 47899999999964
No 119
>PLN02366 spermidine synthase
Probab=82.40 E-value=5.8 Score=41.02 Aligned_cols=62 Identities=18% Similarity=0.389 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 139 ~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
-.|-|+++.-.+. ..|.+-+|+.+|+|.|.++..+++. |. ..++.+||+++.+-+.=++.+.
T Consensus 75 ~~Y~e~l~h~~l~-----~~~~pkrVLiIGgG~G~~~rellk~----~~---v~~V~~VEiD~~Vi~~ar~~f~ 136 (308)
T PLN02366 75 CAYQEMITHLPLC-----SIPNPKKVLVVGGGDGGVLREIARH----SS---VEQIDICEIDKMVIDVSKKFFP 136 (308)
T ss_pred HHHHHHHHHHHHh-----hCCCCCeEEEEcCCccHHHHHHHhC----CC---CCeEEEEECCHHHHHHHHHhhh
Confidence 4567777654332 2344569999999999998887653 32 2379999999998888777664
No 120
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=82.37 E-value=3.6 Score=41.45 Aligned_cols=54 Identities=26% Similarity=0.330 Sum_probs=43.5
Q ss_pred HHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 154 ~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
+..|...--+|+|.|.|+|.|+.-+++++... -+++.+|+-+...+.-+++|+.
T Consensus 88 ~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~------G~v~tyE~r~d~~k~A~~Nl~~ 141 (256)
T COG2519 88 ARLGISPGSRVLEAGTGSGALTAYLARAVGPE------GHVTTYEIREDFAKTARENLSE 141 (256)
T ss_pred HHcCCCCCCEEEEcccCchHHHHHHHHhhCCC------ceEEEEEecHHHHHHHHHHHHH
Confidence 34566445699999999999999999886432 2688899999999998888875
No 121
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=82.24 E-value=5.4 Score=41.38 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=30.9
Q ss_pred HHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 011546 154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (483)
Q Consensus 154 ~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (483)
..++.-..-+|+|+|||+|.++..++.. .+ -.++-||+|+.+...
T Consensus 115 ~~l~~~~g~~VLDvGCG~G~~~~~~~~~---g~-----~~v~GiDpS~~ml~q 159 (314)
T TIGR00452 115 PHLSPLKGRTILDVGCGSGYHMWRMLGH---GA-----KSLVGIDPTVLFLCQ 159 (314)
T ss_pred HhcCCCCCCEEEEeccCCcHHHHHHHHc---CC-----CEEEEEcCCHHHHHH
Confidence 3444323359999999999998776542 11 157889999987543
No 122
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=81.46 E-value=6 Score=38.56 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=36.2
Q ss_pred HcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 155 ~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
.++.+.--+++|+|||.|.|...+... .+ ++.-+|+|+.--++-++++..
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~r-------Cd--~LlavDis~~Al~~Ar~Rl~~ 87 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPR-------CD--RLLAVDISPRALARARERLAG 87 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGG-------EE--EEEEEES-HHHHHHHHHHTTT
T ss_pred hcCccccceeEecCCCccHHHHHHHHh-------hC--ceEEEeCCHHHHHHHHHhcCC
Confidence 356665569999999999999887321 11 688899999998888899875
No 123
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=81.22 E-value=5.6 Score=38.49 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=34.4
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
.+++|+|||+|.++...|.. . ..+++.||.++...+.-++.++.
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr---~-----a~~V~~vE~~~~a~~~a~~Nl~~ 98 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSR---Y-----AAGATLLEMDRAVAQQLIKNLAT 98 (199)
T ss_pred CEEEEcCCCccHHHHHHHHc---C-----CCEEEEEECCHHHHHHHHHHHHH
Confidence 48999999999999765432 1 23799999999998887777753
No 124
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=80.74 E-value=4.1 Score=38.18 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=24.4
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~ 208 (483)
..+|+|+|||.|....-+... ....++++-|..+.+...++
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~-------~~~~~Vv~TD~~~~l~~l~~ 86 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKL-------FGAARVVLTDYNEVLELLRR 86 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT--------T-SEEEEEE-S-HHHHHHH
T ss_pred CceEEEECCccchhHHHHHhc-------cCCceEEEeccchhhHHHHH
Confidence 469999999999655444322 12347899999995555544
No 125
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=80.70 E-value=4.3 Score=43.44 Aligned_cols=42 Identities=17% Similarity=0.132 Sum_probs=30.6
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
.+||||||+|..+..+.+ ..|+ ..++-||+++.+...=.+++
T Consensus 125 ~vLEIGcGsG~~ll~lA~---~~P~----~~~iGIEI~~~~i~~a~~ka 166 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAK---NNPN----KLFIGIEIHTPSIEQVLKQI 166 (390)
T ss_pred eEEEEcCcccHHHHHHHH---hCCC----CCEEEEECCHHHHHHHHHHH
Confidence 899999999998777644 3343 37899999988755444433
No 126
>PRK06922 hypothetical protein; Provisional
Probab=80.53 E-value=3.8 Score=46.62 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=33.0
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
-+|+|+|||+|.++..+.+. +| ..+++-||+|+.+.+.-++++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~---~P----~~kVtGIDIS~~MLe~Ararl 462 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEE---TE----DKRIYGIDISENVIDTLKKKK 462 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHh---CC----CCEEEEEECCHHHHHHHHHHh
Confidence 59999999999987665442 33 348999999999877666654
No 127
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=80.51 E-value=2.4 Score=41.88 Aligned_cols=47 Identities=19% Similarity=0.308 Sum_probs=32.9
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
..+|+++|||+|.++..+.+.+. ...++..||+|+.|-+.=++++..
T Consensus 48 g~~vLDv~~GtG~~~~~l~~~~~------~~~~v~~vD~s~~ML~~a~~k~~~ 94 (233)
T PF01209_consen 48 GDRVLDVACGTGDVTRELARRVG------PNGKVVGVDISPGMLEVARKKLKR 94 (233)
T ss_dssp --EEEEET-TTSHHHHHHGGGSS---------EEEEEES-HHHHHHHHHHHHH
T ss_pred CCEEEEeCCChHHHHHHHHHHCC------CccEEEEecCCHHHHHHHHHHHHh
Confidence 45999999999998887754321 223789999999999888887754
No 128
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=79.76 E-value=3.7 Score=39.96 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 138 s~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
+..|||+.-..+..+++..+....-.+++||+|.|.....+--.. .+. +.+=||+.|.+.+..++.+
T Consensus 20 ~~~YGEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~----~~~---~~~GIEi~~~~~~~a~~~~ 86 (205)
T PF08123_consen 20 SETYGEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQT----GCK---KSVGIEILPELHDLAEELL 86 (205)
T ss_dssp CCCGGGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH------S---EEEEEE-SHHHHHHHHHHH
T ss_pred CcceeecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHc----CCc---EEEEEEechHHHHHHHHHH
Confidence 347889888888888888887656799999999999765543211 111 3677999999877655544
No 129
>PRK01581 speE spermidine synthase; Validated
Probab=79.48 E-value=3.6 Score=43.68 Aligned_cols=59 Identities=20% Similarity=0.340 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 011546 139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (483)
Q Consensus 139 ~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~ 209 (483)
-+|=|+|+.=.+. -.|.+-+|+++|+|.|..++.+|+. + ...++.+||++|.+-+.-++
T Consensus 134 ~iYHE~Lvhp~m~-----~h~~PkrVLIIGgGdG~tlrelLk~----~---~v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 134 QIYHEALVHPIMS-----KVIDPKRVLILGGGDGLALREVLKY----E---TVLHVDLVDLDGSMINMARN 192 (374)
T ss_pred HHHHHHHHHHHHH-----hCCCCCEEEEECCCHHHHHHHHHhc----C---CCCeEEEEeCCHHHHHHHHh
Confidence 4688888764322 2334459999999999988777753 2 12379999999998777664
No 130
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=78.64 E-value=5.8 Score=40.73 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=33.2
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
-+|+|+|||+|+++.-+.+. ..+++-||+|+...+.-+++.+
T Consensus 175 ~~VLDl~cG~G~~sl~la~~---------~~~V~gvD~s~~av~~A~~n~~ 216 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATP---------GMQLTGIEISAEAIACAKQSAA 216 (315)
T ss_pred CEEEEccCCCCHHHHHHHhc---------CCEEEEEeCCHHHHHHHHHHHH
Confidence 48999999999988776541 1278999999999887776654
No 131
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=78.40 E-value=6.6 Score=39.43 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=39.0
Q ss_pred HHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 154 ~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
..++...--+|+|.|.|+|.|..-+++++... -+++-.|..+...+.-++.++.
T Consensus 34 ~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~------G~v~t~E~~~~~~~~A~~n~~~ 87 (247)
T PF08704_consen 34 MRLDIRPGSRVLEAGTGSGSLTHALARAVGPT------GHVYTYEFREDRAEKARKNFER 87 (247)
T ss_dssp HHTT--TT-EEEEE--TTSHHHHHHHHHHTTT------SEEEEEESSHHHHHHHHHHHHH
T ss_pred HHcCCCCCCEEEEecCCcHHHHHHHHHHhCCC------eEEEccccCHHHHHHHHHHHHH
Confidence 33554334699999999999999999987532 2688899999988888877764
No 132
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=77.53 E-value=20 Score=37.16 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=37.0
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 160 ~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
.+++||.|-||.|. .||+++..+|.- ..++.|+|.||..-+.=++.++.
T Consensus 135 ~pvrIlDIAaG~GR---YvlDal~~~~~~--~~~i~LrDys~~Nv~~g~~li~~ 183 (311)
T PF12147_consen 135 RPVRILDIAAGHGR---YVLDALEKHPER--PDSILLRDYSPINVEKGRALIAE 183 (311)
T ss_pred CceEEEEeccCCcH---HHHHHHHhCCCC--CceEEEEeCCHHHHHHHHHHHHH
Confidence 45899999999999 566666666653 33889999999987665555543
No 133
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=77.27 E-value=5.9 Score=42.73 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 142 Ge~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
.+.+..++++.. .....-+|+|+|||+|+++.-+.+.. .+++-||+|+.+-+.-++++.
T Consensus 282 ~e~l~~~vl~~l---~~~~~~~VLDlgcGtG~~sl~la~~~---------~~V~gvD~s~~al~~A~~n~~ 340 (443)
T PRK13168 282 NQKMVARALEWL---DPQPGDRVLDLFCGLGNFTLPLARQA---------AEVVGVEGVEAMVERARENAR 340 (443)
T ss_pred HHHHHHHHHHHh---cCCCCCEEEEEeccCCHHHHHHHHhC---------CEEEEEeCCHHHHHHHHHHHH
Confidence 445555555443 22223589999999999888765421 268899999998777666553
No 134
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=77.15 E-value=5.2 Score=43.21 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=30.2
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~ 208 (483)
-+|+|+|||+|.++..+.+.. -+++-||+|+.+.+.-+
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~---------~~v~giD~s~~~l~~a~ 76 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKA---------GQVIALDFIESVIKKNE 76 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhC---------CEEEEEeCCHHHHHHHH
Confidence 489999999999998876531 16889999999876533
No 135
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=77.14 E-value=8.4 Score=36.73 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=34.0
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
.++++++||+|.|+.-.+..- +-+++.||.++...+.-++.+.
T Consensus 51 ~~vLDLfaGsG~lglea~srg--------a~~v~~vE~~~~a~~~~~~N~~ 93 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRG--------AKVAFLEEDDRKANQTLKENLA 93 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCC--------CCEEEEEeCCHHHHHHHHHHHH
Confidence 489999999999998876521 1268999999998887777664
No 136
>PTZ00146 fibrillarin; Provisional
Probab=77.08 E-value=5.3 Score=41.15 Aligned_cols=45 Identities=16% Similarity=0.094 Sum_probs=32.0
Q ss_pred HHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhH
Q 011546 154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ 204 (483)
Q Consensus 154 ~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr 204 (483)
..+.....-+|+++|||+|++...+.+.+.. .=.++-||+|+.+.
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~------~G~VyAVD~s~r~~ 170 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGP------EGVVYAVEFSHRSG 170 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCC------CCEEEEEECcHHHH
Confidence 3344333358999999999999988875521 12688899998754
No 137
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=76.54 E-value=16 Score=36.90 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=35.0
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 160 ~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
.|-+|+++|+|.||-+--+...+ + ...+|+.||.|+.+.+.=+..+..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~---~---~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVW---P---SLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHh---c---CceeeeeecCCHHHHHHHHHHHhc
Confidence 45699999999999665544433 3 223799999999998876665543
No 138
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=75.66 E-value=7.2 Score=38.65 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=30.1
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
-.+||||+|+|++...+. ++.|+. .|.=||+...--..-.+++
T Consensus 50 pi~lEIGfG~G~~l~~~A---~~nP~~----nfiGiEi~~~~v~~~l~k~ 92 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMA---KKNPEK----NFLGIEIRVPGVAKALKKI 92 (227)
T ss_pred cEEEEECCCCCHHHHHHH---HHCCCC----CEEEEEEehHHHHHHHHHH
Confidence 379999999999877763 456653 6888998876544433333
No 139
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=75.62 E-value=6.1 Score=37.93 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=31.4
Q ss_pred CCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 157 g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
+.+.+ .+||||||.|.++..+.. .+|+ ..|.-||++...-..-.+++
T Consensus 15 ~~~~~-l~lEIG~G~G~~l~~~A~---~~Pd----~n~iGiE~~~~~v~~a~~~~ 61 (195)
T PF02390_consen 15 GNDNP-LILEIGCGKGEFLIELAK---RNPD----INFIGIEIRKKRVAKALRKA 61 (195)
T ss_dssp TSCCE-EEEEET-TTSHHHHHHHH---HSTT----SEEEEEES-HHHHHHHHHHH
T ss_pred CCCCC-eEEEecCCCCHHHHHHHH---HCCC----CCEEEEecchHHHHHHHHHH
Confidence 33344 899999999998877743 4564 37889999987655544444
No 140
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=75.55 E-value=6.6 Score=41.19 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 143 e~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
+.+..++.+.... .+ -+++|+|||+|+++.-+.+.. . +++.||+|+.+.+..++++.
T Consensus 184 ~~l~~~v~~~~~~--~~--~~vlDl~~G~G~~sl~la~~~-------~--~v~~vE~~~~av~~a~~n~~ 240 (353)
T TIGR02143 184 IKMLEWACEVTQG--SK--GDLLELYCGNGNFSLALAQNF-------R--RVLATEIAKPSVNAAQYNIA 240 (353)
T ss_pred HHHHHHHHHHhhc--CC--CcEEEEeccccHHHHHHHHhC-------C--EEEEEECCHHHHHHHHHHHH
Confidence 4444555554321 11 269999999999998543321 1 69999999999888887764
No 141
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=74.76 E-value=7 Score=37.92 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=26.2
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhh
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L 203 (483)
.+|+++|||+|+|+.-+.+. ..++-.=||+++..
T Consensus 15 srVLDLGCGdG~LL~~L~~~--------k~v~g~GvEid~~~ 48 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDE--------KQVDGYGVEIDPDN 48 (193)
T ss_pred CEEEecCCCchHHHHHHHHh--------cCCeEEEEecCHHH
Confidence 59999999999988766442 23467889999874
No 142
>PLN02823 spermine synthase
Probab=74.67 E-value=13 Score=38.89 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=48.6
Q ss_pred CCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 011546 129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (483)
Q Consensus 129 GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~ 208 (483)
|+.-++..---.|=|+++.-.+. -.|.+-+|+.+|.|.|.+++.+|+. + ...++.+||+.|.+-+.-+
T Consensus 77 g~~qs~~~de~~YhE~l~h~~l~-----~~~~pk~VLiiGgG~G~~~re~l~~----~---~~~~v~~VEiD~~vv~lar 144 (336)
T PLN02823 77 GKMQSAEADEFVYHESLVHPALL-----HHPNPKTVFIMGGGEGSTAREVLRH----K---TVEKVVMCDIDQEVVDFCR 144 (336)
T ss_pred CccccccchHHHHHHHHHhHHHh-----hCCCCCEEEEECCCchHHHHHHHhC----C---CCCeEEEEECCHHHHHHHH
Confidence 44444433223577777654332 2334558999999999999888763 1 1237999999999988888
Q ss_pred Hhcc
Q 011546 209 HNLK 212 (483)
Q Consensus 209 ~~L~ 212 (483)
+.+.
T Consensus 145 ~~~~ 148 (336)
T PLN02823 145 KHLT 148 (336)
T ss_pred Hhcc
Confidence 7764
No 143
>PRK03612 spermidine synthase; Provisional
Probab=74.42 E-value=5.6 Score=43.96 Aligned_cols=59 Identities=20% Similarity=0.328 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 011546 139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (483)
Q Consensus 139 ~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~ 209 (483)
..|-|+++.-.+ . ..|.+-+|+++|+|.|.++..+++. |. .-+++.||++|.+.+.-++
T Consensus 281 ~~y~e~l~~~~l---~--~~~~~~rVL~IG~G~G~~~~~ll~~----~~---v~~v~~VEid~~vi~~ar~ 339 (521)
T PRK03612 281 YRYHEALVHPAM---A--ASARPRRVLVLGGGDGLALREVLKY----PD---VEQVTLVDLDPAMTELART 339 (521)
T ss_pred HHHHHHHHHHHH---h--hCCCCCeEEEEcCCccHHHHHHHhC----CC---cCeEEEEECCHHHHHHHHh
Confidence 356676653211 1 1244568999999999998888752 21 1379999999999998887
No 144
>PRK04148 hypothetical protein; Provisional
Probab=74.03 E-value=10 Score=34.71 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 011546 144 MVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (483)
Q Consensus 144 ~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~ 208 (483)
-||.|+.+..... ...+++|+|+|.|.-.+..|.. . ..++.-||+||...+.-+
T Consensus 3 ~i~~~l~~~~~~~---~~~kileIG~GfG~~vA~~L~~---~-----G~~ViaIDi~~~aV~~a~ 56 (134)
T PRK04148 3 TIAEFIAENYEKG---KNKKIVELGIGFYFKVAKKLKE---S-----GFDVIVIDINEKAVEKAK 56 (134)
T ss_pred HHHHHHHHhcccc---cCCEEEEEEecCCHHHHHHHHH---C-----CCEEEEEECCHHHHHHHH
Confidence 4667766655332 2358999999999723333332 1 137899999999655433
No 145
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=72.82 E-value=7.6 Score=39.44 Aligned_cols=44 Identities=23% Similarity=0.446 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 160 ~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
..-+|+++|||+|+++..+++. +| .++++.+|. |...+.-++++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~---~p----~~~~~~~D~-~~~~~~a~~~~ 192 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKH---FP----ELDSTILNL-PGAIDLVNENA 192 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHH---CC----CCEEEEEec-HHHHHHHHHHH
Confidence 3459999999999999888764 34 347888997 44444434444
No 146
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=72.53 E-value=8.7 Score=40.40 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 142 Ge~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
.+.+..++.+.... . +-+++|++||+|+++.-+.+.. -+++-||+|+..-+..++++.
T Consensus 192 ~e~l~~~v~~~~~~--~--~~~vLDl~~G~G~~sl~la~~~---------~~v~~vE~~~~ai~~a~~N~~ 249 (362)
T PRK05031 192 NEKMLEWALDATKG--S--KGDLLELYCGNGNFTLALARNF---------RRVLATEISKPSVAAAQYNIA 249 (362)
T ss_pred HHHHHHHHHHHhhc--C--CCeEEEEeccccHHHHHHHhhC---------CEEEEEECCHHHHHHHHHHHH
Confidence 34555555554331 1 1369999999999998554321 168999999999888777764
No 147
>PLN02476 O-methyltransferase
Probab=72.35 E-value=10 Score=38.70 Aligned_cols=46 Identities=11% Similarity=-0.007 Sum_probs=36.9
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
-+|+|+|.+.|.-+.-+.+++.. .-+++-||.+|...+.-++.++.
T Consensus 120 k~VLEIGT~tGySal~lA~al~~------~G~V~TiE~d~e~~~~Ar~n~~~ 165 (278)
T PLN02476 120 ERCIEVGVYTGYSSLAVALVLPE------SGCLVACERDSNSLEVAKRYYEL 165 (278)
T ss_pred CeEEEecCCCCHHHHHHHHhCCC------CCEEEEEECCHHHHHHHHHHHHH
Confidence 38999999999998888766432 22588899999998888888854
No 148
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=72.18 E-value=3 Score=42.06 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=53.3
Q ss_pred CCCccCCCCh---hHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcC-----ccccceEEEEec
Q 011546 128 EGDFITSPEV---SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKN-----FTESLHIHLVEC 199 (483)
Q Consensus 128 ~GDFiTSpeI---s~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~-----~~~~l~y~iVE~ 199 (483)
-+|+|++++= -..+.-+++..+.+-|.....+ .+.|+|+|-|+|.-..-++..++.... ...++.|.-+|.
T Consensus 24 fdd~Y~~~~~gl~Et~~vf~~gn~L~~~~~~~~~~-~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~ 102 (252)
T COG4121 24 FDDVYFLKSNGLNESMPVFAIGNGLLQNWPDLSQE-ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIEL 102 (252)
T ss_pred hcccccccccchhhhHHHHHhccCccccccccccc-ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEe
Confidence 4688888763 2355556677666667655443 489999999999987777777654332 345678888998
Q ss_pred ChhhHH
Q 011546 200 SPTLQK 205 (483)
Q Consensus 200 Sp~Lr~ 205 (483)
+|.-+.
T Consensus 103 ~P~~~~ 108 (252)
T COG4121 103 DPFSPP 108 (252)
T ss_pred CCCChh
Confidence 886433
No 149
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=71.60 E-value=13 Score=38.07 Aligned_cols=71 Identities=20% Similarity=0.319 Sum_probs=51.3
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 011546 131 FITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (483)
Q Consensus 131 FiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~ 210 (483)
.-|+..-.-.+-||++.-.+.. .|.+-+|+-+|.|.|.+++-+|+.. . --++++||+.|...+..++.
T Consensus 52 ~q~~e~de~~yhEml~h~~~~a-----h~~pk~VLiiGgGdG~tlRevlkh~----~---ve~i~~VEID~~Vi~~ar~~ 119 (282)
T COG0421 52 VQLTERDEFIYHEMLAHVPLLA-----HPNPKRVLIIGGGDGGTLREVLKHL----P---VERITMVEIDPAVIELARKY 119 (282)
T ss_pred hhhccchhHHHHHHHHhchhhh-----CCCCCeEEEECCCccHHHHHHHhcC----C---cceEEEEEcCHHHHHHHHHh
Confidence 3445555567777776543332 2333499999999999999988752 1 12789999999999999999
Q ss_pred ccc
Q 011546 211 LKC 213 (483)
Q Consensus 211 L~~ 213 (483)
|..
T Consensus 120 l~~ 122 (282)
T COG0421 120 LPE 122 (282)
T ss_pred ccC
Confidence 964
No 150
>KOG2901 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.13 E-value=0.034 Score=57.64 Aligned_cols=150 Identities=7% Similarity=-0.179 Sum_probs=88.7
Q ss_pred ccHHHHHHHhhcCCCCcccCCCCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHcCC-----------CCCcEEEEEcC
Q 011546 101 ISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQ-----------PNRVNLVELGP 169 (483)
Q Consensus 101 Isf~~FM~~aLY~P~~GYY~~~~~~G~~GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~-----------p~~~~IvEiGa 169 (483)
++-..||+..++.|.-+||.=..-.+-.+||.|.+++++.|++.|..|.--.|..++. .-..++||.-
T Consensus 68 ~~rdvfg~~gdfitSpeisq~fgeligvw~~~ew~~~g~~~~~qLvelgpgrgtl~~dvl~~~~kf~~~~vs~hLve~S- 146 (415)
T KOG2901|consen 68 MNRDVFGAKGDFITSPEISQIFGEMIGVWTVSEWEQMGRPERFQLVELGPGRGTLMADVLRVLTKFKDEDLSVHLVEVS- 146 (415)
T ss_pred ccHHHhhcccCccCCccHHHHHHHhhheeEEEehhhhCCccceeEEEeccchhHHHHHHHHHHHHhcCceeeEEEEEec-
Confidence 5556999999999999999753334447899999999999999887765555544332 2234666665
Q ss_pred CcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcccccccCcCCcccceeeccCCCCceeeccccccCCCCC
Q 011546 170 GRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGF 249 (483)
Q Consensus 170 G~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~sl~~lp~~~ 249 (483)
+.|..++. .++.++.++.|.++.-. +++. .........+....-. ..+.++|+-++-.++..
T Consensus 147 -------~~ls~lq~-----~~l~~~~~~~s~~~~~t---t~sg-~~~~w~~sl~dvp~g~-s~iiahef~DalpVhkf- 208 (415)
T KOG2901|consen 147 -------PALSKLQA-----QNLCCTDESLSEYKKGS---TLSG-TPIHWHRTLQDVPSGF-TLIIAHEFFDALPVHQF- 208 (415)
T ss_pred -------HhHHHHhh-----cceeEeeccHHHHhhcc---cccc-CchhcccChhhcCCce-EEEEhHHhhhcCcchhh-
Confidence 33333332 34688999988832211 1111 1111110000110001 23456787433233332
Q ss_pred CEEEEEecccccccceEEEEcCCee
Q 011546 250 PTIIVAHEFYDALPVHQFQKTTRGW 274 (483)
Q Consensus 250 ~~iiiANEffDALPv~~f~~~~~~w 274 (483)
. ++++|=.||++++.++...
T Consensus 209 q-----k~~~~w~eV~vd~~~d~~~ 228 (415)
T KOG2901|consen 209 Q-----KSTRGWCEVMVDVGEDSKF 228 (415)
T ss_pred c-----cCCCCcceeEEeccCcccE
Confidence 2 9999999999999885433
No 151
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=70.54 E-value=18 Score=37.07 Aligned_cols=74 Identities=15% Similarity=0.255 Sum_probs=49.3
Q ss_pred CccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 011546 130 DFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (483)
Q Consensus 130 DFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~ 209 (483)
.|++-|.. ..+|.=..-+-...++++.-.--+|+|||||-|.||.-..+ .+ ..+++=|..|+...+.=++
T Consensus 44 ayf~~~~~--tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~---~y-----~v~V~GvTlS~~Q~~~~~~ 113 (283)
T COG2230 44 AYFEDPDM--TLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAE---EY-----GVTVVGVTLSEEQLAYAEK 113 (283)
T ss_pred EEeCCCCC--ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHH---Hc-----CCEEEEeeCCHHHHHHHHH
Confidence 34444433 23444444445566777765557999999999998865543 22 3478889999988877777
Q ss_pred hccc
Q 011546 210 NLKC 213 (483)
Q Consensus 210 ~L~~ 213 (483)
++.+
T Consensus 114 r~~~ 117 (283)
T COG2230 114 RIAA 117 (283)
T ss_pred HHHH
Confidence 6654
No 152
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=69.34 E-value=9.7 Score=39.44 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=27.8
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK 205 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~ 205 (483)
-+|+|+|||+|.++..+++. .+. .++-||+|+.+-.
T Consensus 124 ~~VLDIGCG~G~~~~~la~~---g~~-----~V~GiD~S~~~l~ 159 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGA---GAK-----LVVGIDPSQLFLC 159 (322)
T ss_pred CEEEEeccCCcHHHHHHHHc---CCC-----EEEEEcCCHHHHH
Confidence 58999999999999877653 111 5888999997653
No 153
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=68.74 E-value=18 Score=36.68 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 142 Ge~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
.++=.+-+-.+.++++....-+|+|||||-|.++.-+.+.. .++++-|..|+.-.+.=++++.
T Consensus 44 e~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--------g~~v~gitlS~~Q~~~a~~~~~ 106 (273)
T PF02353_consen 44 EEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--------GCHVTGITLSEEQAEYARERIR 106 (273)
T ss_dssp HHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----------EEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--------CcEEEEEECCHHHHHHHHHHHH
Confidence 44444455556667776545699999999999998886642 2478889999887666555554
No 154
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=67.71 E-value=14 Score=39.11 Aligned_cols=42 Identities=10% Similarity=0.040 Sum_probs=32.8
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
-+|+|+|||+|+++.-+... ..+++-||+|+...+.-+++++
T Consensus 235 ~~vLDL~cG~G~~~l~la~~---------~~~v~~vE~~~~av~~a~~N~~ 276 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGP---------DTQLTGIEIESEAIACAQQSAQ 276 (374)
T ss_pred CEEEEccCCccHHHHHHhhc---------CCeEEEEECCHHHHHHHHHHHH
Confidence 38999999999988766521 1268999999998887777664
No 155
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=65.60 E-value=17 Score=38.90 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=33.3
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
-+|+|+|||.|+++.-+.+.. -+++-||+|+.+.+.-++++.
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~---------~~V~~vE~~~~av~~a~~n~~ 335 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQA---------KSVVGIEVVPESVEKAQQNAE 335 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhC---------CEEEEEEcCHHHHHHHHHHHH
Confidence 589999999999988765421 268899999999887776664
No 156
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=64.74 E-value=18 Score=36.08 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=49.0
Q ss_pred CCCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 011546 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (483)
Q Consensus 128 ~GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (483)
.|+.-++-.--..+=|+|+...+. -.|.+-+|+-||.|.|.+++.+++. + .-.++.+||+.|..-+.-
T Consensus 49 dg~~q~~e~de~~y~e~l~h~~~~-----~~~~p~~VLiiGgG~G~~~~ell~~----~---~~~~i~~VEiD~~Vv~~a 116 (246)
T PF01564_consen 49 DGDVQLSERDEFIYHEMLVHPPLL-----LHPNPKRVLIIGGGDGGTARELLKH----P---PVESITVVEIDPEVVELA 116 (246)
T ss_dssp TTEEEEETTTHHHHHHHHHHHHHH-----HSSST-EEEEEESTTSHHHHHHTTS----T---T-SEEEEEES-HHHHHHH
T ss_pred CCeEEEEEechHHHHHHHhhhHhh-----cCCCcCceEEEcCCChhhhhhhhhc----C---CcceEEEEecChHHHHHH
Confidence 444444433335677777754432 2344569999999999998887642 2 123799999999999998
Q ss_pred HHhccc
Q 011546 208 HHNLKC 213 (483)
Q Consensus 208 ~~~L~~ 213 (483)
++.+..
T Consensus 117 ~~~f~~ 122 (246)
T PF01564_consen 117 RKYFPE 122 (246)
T ss_dssp HHHTHH
T ss_pred HHhchh
Confidence 887743
No 157
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=64.70 E-value=22 Score=35.22 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCC-CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChh-hHH
Q 011546 146 GVWAMCLWEQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT-LQK 205 (483)
Q Consensus 146 a~~i~~~w~~~g~p-~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~-Lr~ 205 (483)
|.-+....+..+.+ ..-.++++|||+|.+..-+++. + .-+++-||+|+. |..
T Consensus 60 ~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~----g----a~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 60 GEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK----G----AKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc----C----CCEEEEEeCCHHHHHH
Confidence 44445555555543 3458999999999998877652 1 236889999994 443
No 158
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=64.64 E-value=21 Score=36.80 Aligned_cols=66 Identities=9% Similarity=0.023 Sum_probs=41.2
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 011546 131 FITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (483)
Q Consensus 131 FiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~ 210 (483)
|+++..+.+. +|..++++. +.+..-.|+|.|||+|+++.-... . ..+++-+|+|+.+...-+++
T Consensus 160 ~~~~~~l~~~----la~~~~~l~---~~~~g~~vLDp~cGtG~~lieaa~----~-----~~~v~g~Di~~~~~~~a~~n 223 (329)
T TIGR01177 160 FFKPGSMDPK----LARAMVNLA---RVTEGDRVLDPFCGTGGFLIEAGL----M-----GAKVIGCDIDWKMVAGARIN 223 (329)
T ss_pred ccCCCCCCHH----HHHHHHHHh---CCCCcCEEEECCCCCCHHHHHHHH----h-----CCeEEEEcCCHHHHHHHHHH
Confidence 5555555554 444444332 222234899999999998644221 1 23688899999987766666
Q ss_pred cc
Q 011546 211 LK 212 (483)
Q Consensus 211 L~ 212 (483)
++
T Consensus 224 l~ 225 (329)
T TIGR01177 224 LE 225 (329)
T ss_pred HH
Confidence 64
No 159
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=64.53 E-value=20 Score=35.35 Aligned_cols=46 Identities=13% Similarity=0.149 Sum_probs=38.0
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
-+|+|||.+.|.=+.-+++.+. + ..+++-||.+|.+.+.-++.++.
T Consensus 61 k~iLEiGT~~GySal~mA~~l~---~---~g~l~tiE~~~e~~~~A~~n~~~ 106 (219)
T COG4122 61 KRILEIGTAIGYSALWMALALP---D---DGRLTTIERDEERAEIARENLAE 106 (219)
T ss_pred ceEEEeecccCHHHHHHHhhCC---C---CCeEEEEeCCHHHHHHHHHHHHH
Confidence 4999999999998877776543 2 33899999999999999998864
No 160
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=63.96 E-value=18 Score=38.79 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=36.4
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
.-+|+|+|||+|.++..+++.. + ..+++-+|+|+.+-+.-++++..
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~---~----~~~v~a~D~s~~~l~~~~~n~~~ 290 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELA---P----QAQVVALDIDAQRLERVRENLQR 290 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHc---C----CCEEEEEeCCHHHHHHHHHHHHH
Confidence 3589999999999998887643 1 13789999999988887777753
No 161
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=63.22 E-value=14 Score=38.63 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCC------CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 145 VGVWAMCLWEQMGQP------NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 145 Ia~~i~~~w~~~g~p------~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
.=+|+-.++-+.-.+ ...+|++||||+|- |+..+.+... -.|+-||+|+.--+.-++|.
T Consensus 41 fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGG---DL~Kw~~~~i-----~~~vg~Dis~~si~ea~~Ry 105 (331)
T PF03291_consen 41 FNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGG---DLQKWQKAKI-----KHYVGIDISEESIEEARERY 105 (331)
T ss_dssp HHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTT---THHHHHHTT------SEEEEEES-HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCch---hHHHHHhcCC-----CEEEEEeCCHHHHHHHHHHH
Confidence 345655554332222 45799999999998 9888865421 26888999988766655565
No 162
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=61.92 E-value=22 Score=34.31 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=34.0
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
-.++++|||+|++.-+..+. . ...+++=||.++...+.=+++...
T Consensus 36 ~~l~DIGaGtGsi~iE~a~~---~----p~~~v~AIe~~~~a~~~~~~N~~~ 80 (187)
T COG2242 36 DRLWDIGAGTGSITIEWALA---G----PSGRVIAIERDEEALELIERNAAR 80 (187)
T ss_pred CEEEEeCCCccHHHHHHHHh---C----CCceEEEEecCHHHHHHHHHHHHH
Confidence 49999999999999998732 2 345788899998876665555543
No 163
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.25 E-value=14 Score=39.35 Aligned_cols=36 Identities=28% Similarity=0.269 Sum_probs=24.5
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecCh
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp 201 (483)
...||||||+|.|+.=|-.++... ..+ .+.+||.+.
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~~-~~~---l~vlvdR~s 219 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQIQ-NVY---LFVLVDRKS 219 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhccc-cEE---EEEeecccc
Confidence 689999999999998876665431 111 245577554
No 164
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=61.09 E-value=14 Score=40.66 Aligned_cols=70 Identities=23% Similarity=0.380 Sum_probs=55.0
Q ss_pred CCCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 011546 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (483)
Q Consensus 128 ~GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (483)
.|+|||+.+|+.+--++|.. .|.. +|+.-=||+|.|.....+.++... ..+.++-.|+++.-..+-
T Consensus 165 ~GEfyTP~~v~~liv~~l~~----------~~~~-~i~DpacGsgg~l~~a~~~~~~~~---~~~~~yGqE~~~~t~~l~ 230 (489)
T COG0286 165 AGEFYTPREVSELIVELLDP----------EPRN-SIYDPACGSGGMLLQAAKYLKRHQ---DEIFIYGQEINDTTYRLA 230 (489)
T ss_pred CCccCChHHHHHHHHHHcCC----------CCCC-eecCCCCchhHHHHHHHHHHHhhc---cceeEEEEeCCHHHHHHH
Confidence 49999999999887666643 2222 899999999999999999886432 257899999999887776
Q ss_pred HHhc
Q 011546 208 HHNL 211 (483)
Q Consensus 208 ~~~L 211 (483)
+-.+
T Consensus 231 ~mN~ 234 (489)
T COG0286 231 KMNL 234 (489)
T ss_pred HHHH
Confidence 6655
No 165
>PTZ00357 methyltransferase; Provisional
Probab=59.08 E-value=42 Score=38.75 Aligned_cols=39 Identities=33% Similarity=0.479 Sum_probs=32.9
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChh
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~ 202 (483)
.+.|+=+|||||=|..-.|++++... -.++++.||.+|.
T Consensus 701 ~vVImVVGAGRGPLVdraLrAak~~g---vkVrIyAVEKNPp 739 (1072)
T PTZ00357 701 TLHLVLLGCGRGPLIDECLHAVSALG---VRLRIFAIEKNLP 739 (1072)
T ss_pred eEEEEEEcCCccHHHHHHHHHHHHcC---CcEEEEEEecCcc
Confidence 36799999999999999999998643 2678999999955
No 166
>PLN03075 nicotianamine synthase; Provisional
Probab=58.34 E-value=39 Score=34.88 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=34.7
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
+-+|+|+|+|.|-+..=++-+ +.+ ...+++-+|+||..-+.-++.+.
T Consensus 124 p~~VldIGcGpgpltaiilaa-~~~----p~~~~~giD~d~~ai~~Ar~~~~ 170 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAK-HHL----PTTSFHNFDIDPSANDVARRLVS 170 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHH-hcC----CCCEEEEEeCCHHHHHHHHHHhh
Confidence 358999999999766655432 112 33489999999999988887774
No 167
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=58.27 E-value=35 Score=29.06 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=40.9
Q ss_pred CCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccc--cceEEEEecChhhHHHHHHhc
Q 011546 157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTE--SLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 157 g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~--~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
....+++|+=+|+|..+ +||.++...+.-.. .+++++.|.+|..-.++-=.|
T Consensus 20 ~~~~~~~iLl~G~gD~R---hvl~Tl~~~~~~~~~~~l~~~l~D~~~~vlARnlLlL 73 (100)
T PF14737_consen 20 PPDEDLNILLLGCGDLR---HVLKTLASLPRSYDGRKLHFTLNDINPEVLARNLLLL 73 (100)
T ss_pred CCCCCceEEEecCccHH---HHHHHHHhcccCcccceeEEEEecCcHHHHHHHHHHH
Confidence 34467999999999987 88998876554443 589999999999888876544
No 168
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=57.28 E-value=22 Score=35.69 Aligned_cols=77 Identities=18% Similarity=0.309 Sum_probs=48.7
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcccccccCcCCcccceeeccCCCCceeeccc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAA 241 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~s 241 (483)
.+|+++|||-|.|+.-+.|. . .+++=|++|+.+-+.-+..-.. +++.+.|-..
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~----G-----a~VtgiD~se~~I~~Ak~ha~e------------------~gv~i~y~~~ 113 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARL----G-----ASVTGIDASEKPIEVAKLHALE------------------SGVNIDYRQA 113 (243)
T ss_pred CeEEEecCCccHhhHHHHHC----C-----CeeEEecCChHHHHHHHHhhhh------------------ccccccchhh
Confidence 69999999999887776542 1 3788899999886664432211 1234445321
Q ss_pred -cccCCC--CCCEEEEEecccccccce
Q 011546 242 -LEQVPS--GFPTIIVAHEFYDALPVH 265 (483)
Q Consensus 242 -l~~lp~--~~~~iiiANEffDALPv~ 265 (483)
.+++-. +..=+|+++|++--.|--
T Consensus 114 ~~edl~~~~~~FDvV~cmEVlEHv~dp 140 (243)
T COG2227 114 TVEDLASAGGQFDVVTCMEVLEHVPDP 140 (243)
T ss_pred hHHHHHhcCCCccEEEEhhHHHccCCH
Confidence 233322 224589999999777743
No 169
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=56.78 E-value=25 Score=34.38 Aligned_cols=39 Identities=18% Similarity=0.030 Sum_probs=28.2
Q ss_pred CCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 011546 159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (483)
Q Consensus 159 p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (483)
|..-+++++|||.|.-|.-+.+ .-.+++=||+||.-.+.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~---------~G~~V~avD~s~~Ai~~ 74 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAE---------QGHEVLGVELSELAVEQ 74 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHh---------CCCeEEEEccCHHHHHH
Confidence 3345999999999996665532 12378999999986553
No 170
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=54.13 E-value=28 Score=36.27 Aligned_cols=47 Identities=9% Similarity=0.091 Sum_probs=33.9
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 160 ~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
...+++|||+|.|-++.=+.. ..+ ..+++-+|++|...+.-++.+..
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~---~~~----~~~~~atDId~~Al~~A~~Nv~~ 160 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGV---HEY----GWRFVGSDIDPQALASAQAIISA 160 (321)
T ss_pred CCceEEEecCCccHHHHHHHh---hCC----CCEEEEEeCCHHHHHHHHHHHHh
Confidence 357999999999966554432 122 24789999999988887777754
No 171
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=52.96 E-value=30 Score=35.23 Aligned_cols=71 Identities=21% Similarity=0.396 Sum_probs=42.0
Q ss_pred CCCCCCCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhh
Q 011546 124 VFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (483)
Q Consensus 124 ~~G~~GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L 203 (483)
.+|+.+=|+=|.+- |-.++..-- ..|. ..-...++++||||.|.--..+-. +++ +++--|+|+.|
T Consensus 64 ~LgRG~MFvfS~~Q---~~~LL~~~~-~~~~--~~~~~~~lLDlGAGdG~VT~~l~~-------~f~--~v~aTE~S~~M 128 (265)
T PF05219_consen 64 ILGRGSMFVFSEEQ---FRKLLRISG-FSWN--PDWKDKSLLDLGAGDGEVTERLAP-------LFK--EVYATEASPPM 128 (265)
T ss_pred hhcCCcEEEecHHH---HHHHhhhhc-cCCC--CcccCCceEEecCCCcHHHHHHHh-------hcc--eEEeecCCHHH
Confidence 47888888877542 223232110 0111 100345899999999986655522 222 36778999999
Q ss_pred HHHHHH
Q 011546 204 QKLQHH 209 (483)
Q Consensus 204 r~~Q~~ 209 (483)
|.+-++
T Consensus 129 r~rL~~ 134 (265)
T PF05219_consen 129 RWRLSK 134 (265)
T ss_pred HHHHHh
Confidence 876544
No 172
>PLN02672 methionine S-methyltransferase
Probab=51.36 E-value=20 Score=43.23 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=35.2
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
.+|+|+|||+|.++..+.... | ..+++-||+||..-+.-++++.
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~---~----~~~v~avDis~~Al~~A~~Na~ 163 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKW---L----PSKVYGLDINPRAVKVAWINLY 163 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHHH
Confidence 489999999999998886542 2 2378999999999888777664
No 173
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=51.32 E-value=26 Score=35.02 Aligned_cols=46 Identities=13% Similarity=0.082 Sum_probs=35.8
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
-+|+|+|||.|..+..+...+.. .-.++-+|+|+..-+.-++++..
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~------~g~v~a~D~~~~~l~~~~~n~~~ 118 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKN------EGAIVANEFSKSRTKVLIANINR 118 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCC------CCEEEEEcCCHHHHHHHHHHHHH
Confidence 48999999999999888765432 12688899999988777777653
No 174
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=51.12 E-value=35 Score=36.83 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=35.9
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
-+|+|+|||+|..+..+.+.+.. .-+++-||+|+.+-+.-++++..
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~------~~~V~avD~s~~~l~~~~~~~~~ 297 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQN------RGQITAVDRYPQKLEKIRSHASA 297 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCC------CcEEEEEECCHHHHHHHHHHHHH
Confidence 48999999999988777665431 22688999999998887777753
No 175
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=51.06 E-value=34 Score=36.89 Aligned_cols=46 Identities=11% Similarity=0.059 Sum_probs=36.1
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
-+|+|+|||+|..+..+++.+. ...+++-||+|+..-+.-++++..
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~------~~~~v~avDi~~~~l~~~~~n~~~ 297 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLK------NTGKVVALDIHEHKLKLIEENAKR 297 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4899999999999998887542 123789999999987776676643
No 176
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=49.40 E-value=37 Score=36.15 Aligned_cols=68 Identities=9% Similarity=0.116 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHcCCC-CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 140 MFGEMVGVWAMCLWEQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 140 ~FGe~Ia~~i~~~w~~~g~p-~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
.|.+=|++-+++.+.....+ .+++++|+-+|+|.++.-.+... + ..-+++.+|+||...+.-+++++.
T Consensus 23 ~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~---~---ga~~Vv~nD~n~~Av~~i~~N~~~ 91 (374)
T TIGR00308 23 QFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEI---E---GVREVFANDINPKAVESIKNNVEY 91 (374)
T ss_pred hccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhC---C---CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 44555555555555443322 24799999999999887665432 1 112789999999999988887753
No 177
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=49.39 E-value=44 Score=35.86 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=36.5
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
-+|+|+|||.|..+..+++.+. ..+++-+|+|+.+-+.-+++++.
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~-------~~~v~a~D~~~~~l~~~~~n~~r 284 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP-------QAQVVALDIHEHRLKRVYENLKR 284 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC-------CCeEEEEeCCHHHHHHHHHHHHH
Confidence 5899999999999998876542 23788999999988887777753
No 178
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=48.71 E-value=51 Score=32.05 Aligned_cols=37 Identities=16% Similarity=-0.051 Sum_probs=27.5
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (483)
.-+++++|||.|.-|.=+.+ . -.+++=||+||...+.
T Consensus 35 ~~rvLd~GCG~G~da~~LA~----~-----G~~V~gvD~S~~Ai~~ 71 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAE----Q-----GHRVLGVELSEIAVEQ 71 (213)
T ss_pred CCeEEEeCCCchhHHHHHHh----C-----CCeEEEEeCCHHHHHH
Confidence 35999999999986655432 1 2268899999997664
No 179
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=48.62 E-value=20 Score=36.17 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=27.3
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~ 209 (483)
-+++.+|||+|-+..- ||.+.. +..=|++|..|-++-++
T Consensus 127 ~~~lDLGCGTGL~G~~-lR~~a~--------~ltGvDiS~nMl~kA~e 165 (287)
T COG4976 127 RRMLDLGCGTGLTGEA-LRDMAD--------RLTGVDISENMLAKAHE 165 (287)
T ss_pred ceeeecccCcCcccHh-HHHHHh--------hccCCchhHHHHHHHHh
Confidence 4899999999976544 454322 34568899988776655
No 180
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=48.19 E-value=23 Score=39.05 Aligned_cols=33 Identities=12% Similarity=0.099 Sum_probs=24.6
Q ss_pred CCCCcEEEEchhHHHHHHHHHHHhccCCeEEEE
Q 011546 314 LEKLEHIEVCAKAMELTGAMAKRIGSDGGGALI 346 (483)
Q Consensus 314 ~~~g~~~Ei~~~a~~~l~~la~~l~~~~G~~Li 346 (483)
+.+|-.+++.++...+.....+.+.+++++-++
T Consensus 452 Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 452 LKDNGNLVFASDIENYFYEAIELIQQNGNFEII 484 (506)
T ss_pred cCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEec
Confidence 456888999999888888888887765444443
No 181
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=47.61 E-value=65 Score=32.28 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 137 VSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 137 Is~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
+++.-|+++..-+ + +-.| -+|+|+|.+.|.=+.-+.+++. +..+++-||.+|...+.-++.+..
T Consensus 63 ~~~~~g~lL~~l~----~-~~~a--k~iLEiGT~~GySal~la~al~------~~g~v~tiE~~~~~~~~Ar~~~~~ 126 (247)
T PLN02589 63 TSADEGQFLNMLL----K-LINA--KNTMEIGVYTGYSLLATALALP------EDGKILAMDINRENYELGLPVIQK 126 (247)
T ss_pred cCHHHHHHHHHHH----H-HhCC--CEEEEEeChhhHHHHHHHhhCC------CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 3455565553322 2 2233 3899999999987776665542 234789999999988887777753
No 182
>PRK00536 speE spermidine synthase; Provisional
Probab=47.35 E-value=38 Score=34.36 Aligned_cols=59 Identities=8% Similarity=0.053 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 140 MFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 140 ~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
+|=|||+.=.+ .-.|.|-+|+=+|.|.|-.++.+|+. |. ++++||+.+..-+.-++.|-
T Consensus 57 iYHEmLvHppl-----~~h~~pk~VLIiGGGDGg~~REvLkh----~~-----~v~mVeID~~Vv~~~k~~lP 115 (262)
T PRK00536 57 IESELLAHMGG-----CTKKELKEVLIVDGFDLELAHQLFKY----DT-----HVDFVQADEKILDSFISFFP 115 (262)
T ss_pred hHHHHHHHHHH-----hhCCCCCeEEEEcCCchHHHHHHHCc----CC-----eeEEEECCHHHHHHHHHHCH
Confidence 66777765333 23455669999999999999999874 31 89999999999888888774
No 183
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=46.00 E-value=25 Score=35.22 Aligned_cols=36 Identities=22% Similarity=0.456 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhh
Q 011546 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (483)
Q Consensus 160 ~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L 203 (483)
.+-.++|||||.|...++||++=. -+..+||+.+..
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~--------~RL~vVE~D~RF 85 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADV--------ARLLVVEKDTRF 85 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcch--------hheeeeeecccc
Confidence 446899999999999999997521 156677877654
No 184
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=45.72 E-value=9.5 Score=42.35 Aligned_cols=42 Identities=40% Similarity=0.784 Sum_probs=33.9
Q ss_pred HHHHHHHhhcCCCCcccCCC--C--CC-----CCCCCcc--CCCChhHHHHHH
Q 011546 103 VAEYMEEVLTNPKAGFYINR--D--VF-----GAEGDFI--TSPEVSQMFGEM 144 (483)
Q Consensus 103 f~~FM~~aLY~P~~GYY~~~--~--~~-----G~~GDFi--TSpeIs~~FGe~ 144 (483)
.-+||+.-|-||..|+|+.. + ++ -++|-|| |+-||.|+||+-
T Consensus 364 I~qYl~rdlsh~~GGfysaEDADSlp~h~~k~k~EGAfyaWt~dEIqqll~e~ 416 (786)
T KOG2244|consen 364 ILQYLRRDLSHPEGGFYSAEDADSLPFHGAKRKKEGAFYAWTSDEIQQLLGEN 416 (786)
T ss_pred HHHHHHHhccCCCCCcccccccCCCcccccccccccceEEeeHHHHHHHhCCC
Confidence 45799999999999999863 2 22 2578898 899999999975
No 185
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=45.64 E-value=56 Score=34.81 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=45.9
Q ss_pred CccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 011546 130 DFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (483)
Q Consensus 130 DFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~ 209 (483)
=||-+- +.+.+-|...+++.+... .+ ..+|+|++||+|.++.-+.... + ..+++.+|++|...+.-++
T Consensus 32 vFyqp~---~~~nrdl~~~v~~~~~~~-~~-~~~vLDl~aGsG~~~l~~a~~~---~----~~~V~a~Din~~Av~~a~~ 99 (382)
T PRK04338 32 VFYNPR---MELNRDISVLVLRAFGPK-LP-RESVLDALSASGIRGIRYALET---G----VEKVTLNDINPDAVELIKK 99 (382)
T ss_pred eeeCcc---ccchhhHHHHHHHHHHhh-cC-CCEEEECCCcccHHHHHHHHHC---C----CCEEEEEeCCHHHHHHHHH
Confidence 455442 344555555555555322 11 2489999999999887664432 1 2368999999998887777
Q ss_pred hcc
Q 011546 210 NLK 212 (483)
Q Consensus 210 ~L~ 212 (483)
+++
T Consensus 100 N~~ 102 (382)
T PRK04338 100 NLE 102 (382)
T ss_pred HHH
Confidence 664
No 186
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=43.64 E-value=75 Score=30.73 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 011546 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK 205 (483)
Q Consensus 160 ~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~ 205 (483)
.+.+++.+|||.|+-+.=+.+ .-..++-||.|+.--+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~---------~G~~VtAvD~s~~al~ 66 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLAS---------QGFDVTAVDISPVALE 66 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHH---------TT-EEEEEESSHHHHH
T ss_pred CCCcEEEcCCCCcHHHHHHHH---------CCCeEEEEECCHHHHH
Confidence 456999999999996654432 1237899999995443
No 187
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=43.05 E-value=94 Score=31.81 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=34.3
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (483)
...+||+|.|+-+=.+-+|++++... ..++|+-|++|...-..
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~---~~~ryvpiDv~a~iL~~ 121 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRG---SLLRYVPIDVSASILRA 121 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcC---CcceeeeecccHHHHHH
Confidence 36999999999999999999987532 23489999999875433
No 188
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=42.91 E-value=65 Score=34.81 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=36.4
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
-+|+|+|||+|..+..++..+. +.-+++-+|+|+..-+.-++++..
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~------~~g~V~a~Dis~~rl~~~~~n~~r 284 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMK------DQGKILAVDISREKIQLVEKHAKR 284 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcC------CCCEEEEEECCHHHHHHHHHHHHH
Confidence 4899999999999988876542 123788899999988887777753
No 189
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=42.55 E-value=21 Score=34.77 Aligned_cols=37 Identities=27% Similarity=0.508 Sum_probs=26.1
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 011546 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (483)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (483)
+|+.+|+|+|.|...++.. .++ .. ..=|+-|+.--++
T Consensus 70 ~VlDLGtGNG~~L~~L~~e--gf~---~~--L~GvDYs~~AV~L 106 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKE--GFQ---SK--LTGVDYSEKAVEL 106 (227)
T ss_pred ceeeccCCchHHHHHHHHh--cCC---CC--ccccccCHHHHHH
Confidence 9999999999988777553 233 21 4557778776665
No 190
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=42.21 E-value=54 Score=32.96 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=46.8
Q ss_pred CCCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 011546 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (483)
Q Consensus 128 ~GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (483)
+.+|.|+.-|--+=.+|..+-+. + ..+.-|.+--|++||||+|--. .+|.. + -..++=|++||.|-+.-
T Consensus 20 A~kYt~nsri~~IQ~em~eRaLE-L-Lalp~~~~~~iLDIGCGsGLSg-~vL~~----~----Gh~wiGvDiSpsML~~a 88 (270)
T KOG1541|consen 20 APKYTQNSRIVLIQAEMAERALE-L-LALPGPKSGLILDIGCGSGLSG-SVLSD----S----GHQWIGVDISPSMLEQA 88 (270)
T ss_pred hhhccccceeeeehHHHHHHHHH-H-hhCCCCCCcEEEEeccCCCcch-heecc----C----CceEEeecCCHHHHHHH
Confidence 46888888887777787777543 2 2233334678999999999643 33321 1 12567799999997764
Q ss_pred HH
Q 011546 208 HH 209 (483)
Q Consensus 208 ~~ 209 (483)
.+
T Consensus 89 ~~ 90 (270)
T KOG1541|consen 89 VE 90 (270)
T ss_pred HH
Confidence 43
No 191
>PF11784 DUF3320: Protein of unknown function (DUF3320); InterPro: IPR021754 This family is conserved in Proteobacteria and Chlorobi families. Many members are annotated as being putative DNA helicase-related proteins.
Probab=40.27 E-value=47 Score=25.24 Aligned_cols=36 Identities=17% Similarity=0.385 Sum_probs=28.6
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCcccHHHHHHHhh
Q 011546 75 EHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVL 111 (483)
Q Consensus 75 ~~~~~~~~~~~L~~~i~~~I~~~~GpIsf~~FM~~aL 111 (483)
+.-..+.+...|.+.|.+.|+.+ |||+.+.-.+..+
T Consensus 2 ~~f~~~~~~~~L~~~i~~Iv~~E-gPI~~~~L~~Ri~ 37 (52)
T PF11784_consen 2 DDFYHPEYRPQLARMIRQIVEVE-GPIHEDELARRIA 37 (52)
T ss_pred cchhhhhHHHHHHHHHHHHHHHc-CCccHHHHHHHHH
Confidence 34444556788999999999999 9999998777665
No 192
>KOG1774 consensus Small nuclear ribonucleoprotein E [RNA processing and modification]
Probab=38.74 E-value=18 Score=30.23 Aligned_cols=34 Identities=32% Similarity=0.456 Sum_probs=25.1
Q ss_pred ccHHHHHHHhhcCCCCcccCC--CCCCCC---CCCccCC
Q 011546 101 ISVAEYMEEVLTNPKAGFYIN--RDVFGA---EGDFITS 134 (483)
Q Consensus 101 Isf~~FM~~aLY~P~~GYY~~--~~~~G~---~GDFiTS 134 (483)
+-|++||..+|=+-+.=+-.+ +..+|+ +||=||.
T Consensus 44 vGFDEyMNvVlD~aeev~~k~~~rk~lGRilLKGDnItl 82 (88)
T KOG1774|consen 44 VGFDEYMNLVLDDAEEVHSKTKSRKELGRILLKGDNITL 82 (88)
T ss_pred echHHhhhhhhcchhhccccccCCCccccEEEcCCcEEE
Confidence 569999999998765544443 345887 8998884
No 193
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=38.66 E-value=37 Score=33.60 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=33.6
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 160 ~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
..-+.++.|||=|+...++|- | +.+ ++-|||+++.+-+.-++.|..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl-----~-~f~--~VDlVEp~~~Fl~~a~~~l~~ 100 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLL-----P-VFD--EVDLVEPVEKFLEQAKEYLGK 100 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCC-----C-C-S--EEEEEES-HHHHHHHHHHTCC
T ss_pred CcceEEecccccchhHHHHHH-----H-hcC--EeEEeccCHHHHHHHHHHhcc
Confidence 456999999999999988863 2 223 789999999998888877764
No 194
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=38.09 E-value=40 Score=33.04 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=28.3
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
+|+|||+|+|.=+..+-+ .+|. +++.--|+.+.++.--+..+
T Consensus 28 ~vLEiaSGtGqHa~~FA~---~lP~----l~WqPSD~~~~~~~sI~a~~ 69 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQ---ALPH----LTWQPSDPDDNLRPSIRAWI 69 (204)
T ss_pred eEEEEcCCccHHHHHHHH---HCCC----CEEcCCCCChHHHhhHHHHH
Confidence 599999999997777644 3443 46666677777754433333
No 195
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=37.83 E-value=87 Score=32.37 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=32.2
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
..|+|-|-|+|.|..-|.|++.-.. +++-.|......+.-++-.
T Consensus 107 svV~EsGTGSGSlShaiaraV~ptG------hl~tfefH~~Ra~ka~eeF 150 (314)
T KOG2915|consen 107 SVVLESGTGSGSLSHAIARAVAPTG------HLYTFEFHETRAEKALEEF 150 (314)
T ss_pred CEEEecCCCcchHHHHHHHhhCcCc------ceEEEEecHHHHHHHHHHH
Confidence 5999999999999999999875322 5666777666554444433
No 196
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=37.28 E-value=23 Score=40.30 Aligned_cols=49 Identities=33% Similarity=0.565 Sum_probs=37.6
Q ss_pred HHHHHHHhhcCCCCcccCC--CCCCCCCCCccC-C-CChhHHHHHHHHHHHHHH
Q 011546 103 VAEYMEEVLTNPKAGFYIN--RDVFGAEGDFIT-S-PEVSQMFGEMVGVWAMCL 152 (483)
Q Consensus 103 f~~FM~~aLY~P~~GYY~~--~~~~G~~GDFiT-S-peIs~~FGe~Ia~~i~~~ 152 (483)
.-+||..-||+|+.|||++ .+..|.+|-||| | -||..+-|+ .+.++...
T Consensus 301 i~~~l~rel~sp~ggFyss~DAD~~g~EG~~Y~Ws~eEi~~~Lg~-d~~~~~~~ 353 (667)
T COG1331 301 ILDYLLRELYSPEGGFYSSLDADSDGEEGKYYTWSVEELKEVLGE-DAELACKY 353 (667)
T ss_pred HHHHHHHHhcCCCCceeecccccCcccCCCeeecCHHHHHHHhcc-cHHHHHHH
Confidence 5679999999999999997 457999999997 3 458888883 33444443
No 197
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=37.26 E-value=1.2e+02 Score=29.55 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=34.5
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcccc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCM 214 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~~ 214 (483)
+.-.+|||||+|--..-+...+. ....|.-.+++|.-.+.=+++.+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~------~~~~~latDiNp~A~~~Tl~TA~~n 91 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG------PQALYLATDINPEALEATLETARCN 91 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC------CCceEEEecCCHHHHHHHHHHHHhc
Confidence 34789999999985554433221 3346888999999888888887764
No 198
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=36.43 E-value=82 Score=33.90 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=34.6
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
-+|+|+|||.|..+..+.+... +.-+++-+|+|+..-+.-++++.
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~------~~g~v~a~D~~~~rl~~~~~n~~ 298 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMG------DQGEIWAVDRSASRLKKLQENAQ 298 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhC------CCceEEEEcCCHHHHHHHHHHHH
Confidence 5899999999999988876432 12368889999987766666664
No 199
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=35.12 E-value=53 Score=30.64 Aligned_cols=54 Identities=28% Similarity=0.359 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCcEEE--EEcCCcchhHHHHHHHHhcCcCccccceEEEEecC
Q 011546 138 SQMFGEMVGVWAMCLWEQMGQPNRVNLV--ELGPGRGTLMADLLRGASKFKNFTESLHIHLVECS 200 (483)
Q Consensus 138 s~~FGe~Ia~~i~~~w~~~g~p~~~~Iv--EiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~S 200 (483)
..-||+.+|..+ .+..+-++ ++|||.=||++.|++++.....+ .+=+|.||+.=
T Consensus 11 t~~lg~~l~~~l--------~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V-~SPTFtlv~~Y 66 (149)
T COG0802 11 TLALGERLAEAL--------KAGDVVLLSGDLGAGKTTLVRGIAKGLGVDGNV-KSPTFTLVEEY 66 (149)
T ss_pred HHHHHHHHHhhC--------CCCCEEEEEcCCcCChHHHHHHHHHHcCCCCcc-cCCCeeeehhh
Confidence 455777777654 23333333 89999999999999998632112 12256776543
No 200
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=33.85 E-value=59 Score=34.82 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=31.7
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
-+|+|+|||+|.++...+ . + ...+++.||+|+..-+.=++++.
T Consensus 222 ~rVLDlfsgtG~~~l~aa---~--~---ga~~V~~VD~s~~al~~a~~N~~ 264 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSAL---M--G---GCSQVVSVDTSQEALDIARQNVE 264 (396)
T ss_pred CeEEEeccCCCHHHHHHH---h--C---CCCEEEEEECCHHHHHHHHHHHH
Confidence 489999999999864332 1 1 12378999999998887666664
No 201
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=33.37 E-value=19 Score=38.32 Aligned_cols=42 Identities=24% Similarity=0.471 Sum_probs=28.5
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~ 208 (483)
+-+|++.|+|-||=+... -..+|++- +..|||.||.|+++=-
T Consensus 114 pqsiLDvG~GPgtgl~A~---n~i~Pdl~---sa~ile~sp~lrkV~~ 155 (484)
T COG5459 114 PQSILDVGAGPGTGLWAL---NDIWPDLK---SAVILEASPALRKVGD 155 (484)
T ss_pred cchhhccCCCCchhhhhh---cccCCCch---hhhhhccCHHHHHHHH
Confidence 347999998888833221 11246543 5789999999998753
No 202
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=33.17 E-value=70 Score=30.42 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=42.8
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 011546 132 ITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (483)
Q Consensus 132 iTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L 211 (483)
.|=|.-+.+ =|+|-.|+... . . ...+++++=||+|.|....|. . .+-++++||.|+...+.-++++
T Consensus 20 ~~RPT~drv-realFniL~~~-~---~-~g~~vLDLFaGSGalGlEALS---R-----GA~~v~fVE~~~~a~~~i~~N~ 85 (183)
T PF03602_consen 20 NTRPTTDRV-REALFNILQPR-N---L-EGARVLDLFAGSGALGLEALS---R-----GAKSVVFVEKNRKAIKIIKKNL 85 (183)
T ss_dssp TS-SSSHHH-HHHHHHHHHCH-----H-TT-EEEETT-TTSHHHHHHHH---T-----T-SEEEEEES-HHHHHHHHHHH
T ss_pred CcCCCcHHH-HHHHHHHhccc-c---c-CCCeEEEcCCccCccHHHHHh---c-----CCCeEEEEECCHHHHHHHHHHH
Confidence 444554443 46666666544 1 1 235999999999999966543 2 1237899999999988888877
Q ss_pred cc
Q 011546 212 KC 213 (483)
Q Consensus 212 ~~ 213 (483)
+.
T Consensus 86 ~~ 87 (183)
T PF03602_consen 86 EK 87 (183)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 203
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=32.98 E-value=1.4e+02 Score=29.55 Aligned_cols=50 Identities=10% Similarity=-0.089 Sum_probs=34.0
Q ss_pred HHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 011546 151 CLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (483)
Q Consensus 151 ~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~ 209 (483)
+.|.++..+..-+|+-.|||+|.-|.-+.+ . -.+++-||.||.-.+...+
T Consensus 34 ~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~----~-----G~~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 34 KHFSKLNINDSSVCLIPMCGCSIDMLFFLS----K-----GVKVIGIELSEKAVLSFFS 83 (226)
T ss_pred HHHHhcCCCCCCeEEEeCCCChHHHHHHHh----C-----CCcEEEEecCHHHHHHHHH
Confidence 345555544446999999999995554432 1 2268999999987766544
No 204
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=32.55 E-value=47 Score=33.96 Aligned_cols=40 Identities=18% Similarity=0.372 Sum_probs=33.0
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~ 210 (483)
.+|+++|||.|-|...+.|.= .++.=|++|+.+-+.-++.
T Consensus 91 ~~ilDvGCGgGLLSepLArlg---------a~V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG---------AQVTGIDASDDMVEVANEH 130 (282)
T ss_pred ceEEEeccCccccchhhHhhC---------CeeEeecccHHHHHHHHHh
Confidence 469999999999988876531 2688899999999887777
No 205
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=31.88 E-value=2.5e+02 Score=32.42 Aligned_cols=69 Identities=14% Similarity=0.106 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHcCC-CCCcEEEEEcCCcchhHHHHHHHHhc-CcCcc------------------------------
Q 011546 142 GEMVGVWAMCLWEQMGQ-PNRVNLVELGPGRGTLMADLLRGASK-FKNFT------------------------------ 189 (483)
Q Consensus 142 Ge~Ia~~i~~~w~~~g~-p~~~~IvEiGaG~GtLa~DIL~~l~~-~p~~~------------------------------ 189 (483)
=|.||..++.. .|. .....+++-+||+||+.---..-..+ .|.+.
T Consensus 174 ~etlAaa~l~~---a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 174 KENLAAAILLR---SGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred cHHHHHHHHHH---cCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 47777776643 343 12358999999999998654432221 12110
Q ss_pred ----ccceEEEEecChhhHHHHHHhccc
Q 011546 190 ----ESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 190 ----~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
...+++-+|+++.+.+.-++++..
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~ 278 (702)
T PRK11783 251 GLAELPSKFYGSDIDPRVIQAARKNARR 278 (702)
T ss_pred cccccCceEEEEECCHHHHHHHHHHHHH
Confidence 123688899999999888887754
No 206
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=30.94 E-value=64 Score=37.16 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=34.4
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
-+|+|+|||+|.++.-++.. .+-+++.||+|+...+.-++++.
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~--------Ga~~V~~vD~s~~al~~a~~N~~ 582 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALG--------GAKSTTTVDMSNTYLEWAERNFA 582 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHC--------CCCEEEEEeCCHHHHHHHHHHHH
Confidence 48999999999998877642 12268999999999888777764
No 207
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=29.59 E-value=1.2e+02 Score=32.55 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHHcC---CC-CCcEEEEEcCCcc----hhHHHHHHHHhc
Q 011546 137 VSQMFGEMVGVWAMCLWEQMG---QP-NRVNLVELGPGRG----TLMADLLRGASK 184 (483)
Q Consensus 137 Is~~FGe~Ia~~i~~~w~~~g---~p-~~~~IvEiGaG~G----tLa~DIL~~l~~ 184 (483)
+-......+.-++.+....+. .| ..+.|+++|||+| .++..|++++++
T Consensus 36 ~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~ 91 (386)
T PLN02668 36 AQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSK 91 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHH
Confidence 444444444444444333332 24 5789999999999 666777777753
No 208
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=28.96 E-value=1.5e+02 Score=31.49 Aligned_cols=114 Identities=22% Similarity=0.329 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhhcCCc-ccHHHHHHHhhcCCCCc----ccCCC--CCCCC--CCCccCCC----ChhH--HHHHHHHHH
Q 011546 84 SELVKHLKGIIKFRGGP-ISVAEYMEEVLTNPKAG----FYINR--DVFGA--EGDFITSP----EVSQ--MFGEMVGVW 148 (483)
Q Consensus 84 ~~L~~~i~~~I~~~~Gp-Isf~~FM~~aLY~P~~G----YY~~~--~~~G~--~GDFiTSp----eIs~--~FGe~Ia~~ 148 (483)
..+...|++.-...|.| -.++.|+.+||..--.| =|..- ..... ..+.+.+- +++| -|+...|++
T Consensus 21 ~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~P~~~fa~~taNq 100 (374)
T PF03514_consen 21 QELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAAYQLFYELSPFLKFAHFTANQ 100 (374)
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHHHHHHHHHhhHHhhhhhchhH
Confidence 33444444443334333 24777888888665444 12110 00100 12222221 3344 367777887
Q ss_pred HHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEec
Q 011546 149 AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVEC 199 (483)
Q Consensus 149 i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~ 199 (483)
. +++.+..-..++||++|-|.|.-=..+++++...|.-...++++-|..
T Consensus 101 a--IleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~ 149 (374)
T PF03514_consen 101 A--ILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGP 149 (374)
T ss_pred H--HHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccC
Confidence 4 344444446799999999999999999999987665556789999988
No 209
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=28.40 E-value=65 Score=33.64 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=30.3
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
-+|+++|||+|.-|..+++. .+-.+.-||+|+.. -.|-+.++
T Consensus 117 k~VLDIGC~nGY~~frM~~~--------GA~~ViGiDP~~lf-~~QF~~i~ 158 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLGR--------GAKSVIGIDPSPLF-YLQFEAIK 158 (315)
T ss_pred CEEEEecCCCcHHHHHHhhc--------CCCEEEEECCChHH-HHHHHHHH
Confidence 49999999999999888753 22257889998864 44544443
No 210
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=27.82 E-value=1.1e+02 Score=31.07 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=24.9
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 011546 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (483)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (483)
.++|+|||+| .|.-++... ++ +++=+++|+.+-++
T Consensus 36 ~a~DvG~G~G-qa~~~iae~------~k--~VIatD~s~~mL~~ 70 (261)
T KOG3010|consen 36 LAWDVGTGNG-QAARGIAEH------YK--EVIATDVSEAMLKV 70 (261)
T ss_pred eEEEeccCCC-cchHHHHHh------hh--hheeecCCHHHHHH
Confidence 7999999999 565554432 23 56778999886553
No 211
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=27.26 E-value=90 Score=21.49 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhcCCcccHHHHHHHhhc
Q 011546 84 SELVKHLKGIIKFRGGPISVAEYMEEVLT 112 (483)
Q Consensus 84 ~~L~~~i~~~I~~~~GpIsf~~FM~~aLY 112 (483)
.++.+.|.+..+.. | +|.++||..++-
T Consensus 8 ~~~~~~l~~~a~~~-g-~s~s~~ir~ai~ 34 (39)
T PF01402_consen 8 DELYERLDELAKEL-G-RSRSELIREAIR 34 (39)
T ss_dssp HHHHHHHHHHHHHH-T-SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-C-cCHHHHHHHHHH
Confidence 57788888888888 6 999999999873
No 212
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.75 E-value=1.5e+02 Score=31.04 Aligned_cols=67 Identities=19% Similarity=0.359 Sum_probs=45.5
Q ss_pred CCChh-HHHHHHHHHH--HHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 011546 134 SPEVS-QMFGEMVGVW--AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (483)
Q Consensus 134 SpeIs-~~FGe~Ia~~--i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (483)
+|+|. -.|.++.|+- +...+++.+ .+.+||.+|||.-+|+..++.+.. +..+.|+=|+-++....+-
T Consensus 60 ~P~inRGy~~R~~aI~~~v~~Fl~~~~--~~~qivnLGcG~D~l~frL~s~~~-----~~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 60 APEINRGYWARTMAIRHAVRAFLEQTD--GKKQIVNLGAGFDTLYFRLLSSGE-----LDRVKFIEVDFPEVVERKI 129 (335)
T ss_pred CceecchhhHHHHHHHHHHHHHHHhcC--CceEEEEcCCCccchhhhhhccCC-----CCcceEEEecCcHHHHHHH
Confidence 57774 3666666653 344555533 568999999999999999987532 2455677777777665443
No 213
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=26.63 E-value=1.1e+02 Score=30.07 Aligned_cols=64 Identities=22% Similarity=0.302 Sum_probs=42.5
Q ss_pred CCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 011546 129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (483)
Q Consensus 129 GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~ 208 (483)
+|-.|-.|-=-+|-++|+.-.- -...++|+|+|-|+.=--.+ +-+++-||..|.-...-+
T Consensus 12 ~~LL~D~eRlavF~~ai~~va~-----------d~~~DLGaGsGiLs~~Aa~~---------A~rViAiE~dPk~a~~a~ 71 (252)
T COG4076 12 LDLLRDVERLAVFTSAIAEVAE-----------DTFADLGAGSGILSVVAAHA---------AERVIAIEKDPKRARLAE 71 (252)
T ss_pred hhhhhhHHHHHHHHHHHHHHhh-----------hceeeccCCcchHHHHHHhh---------hceEEEEecCcHHHHHhh
Confidence 3444444544567777766432 26899999999876433221 126888999999888888
Q ss_pred Hhcc
Q 011546 209 HNLK 212 (483)
Q Consensus 209 ~~L~ 212 (483)
++|.
T Consensus 72 eN~~ 75 (252)
T COG4076 72 ENLH 75 (252)
T ss_pred hcCC
Confidence 8763
No 214
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=26.48 E-value=1.1e+02 Score=33.01 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 138 s~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
+..|||+.-.++....+++.....-..+.+|.|=|.|+.-+..+.+.- .++-+-|+..-..++.+|++.++.
T Consensus 170 s~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k----~svG~eim~~pS~~a~~~~~~~kk 241 (419)
T KOG3924|consen 170 SETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCK----KSVGFEIMDKPSQCAELNKEEFKK 241 (419)
T ss_pred ccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccc----cccceeeecCcHHHHHHHHHHHHH
Confidence 689999999999999998877555689999999999998876655432 222345566666677788876654
No 215
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=26.31 E-value=1.5e+02 Score=33.68 Aligned_cols=70 Identities=17% Similarity=0.134 Sum_probs=44.6
Q ss_pred HHHHHHHHHH-----HHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhc----Cc-CccccceEEEEecChhhHHHHHHh
Q 011546 141 FGEMVGVWAM-----CLWEQMGQPNRVNLVELGPGRGTLMADLLRGASK----FK-NFTESLHIHLVECSPTLQKLQHHN 210 (483)
Q Consensus 141 FGe~Ia~~i~-----~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~----~p-~~~~~l~y~iVE~Sp~Lr~~Q~~~ 210 (483)
+.|+...++. +.|...+. ..++|+|+|=|+|....-.++.+++ .| ....+++|+-||.-|-.++.-++.
T Consensus 34 ~~e~~~~f~~~~~l~~r~~~~~~-~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~ 112 (662)
T PRK01747 34 LEETRYVFLGGNGLPERWAEHPR-RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARA 112 (662)
T ss_pred HHHhhhhhhcCCCHHHHHhcCCC-CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHH
Confidence 4555555432 34543222 3599999999999977777777632 23 233578999999977555444444
Q ss_pred c
Q 011546 211 L 211 (483)
Q Consensus 211 L 211 (483)
+
T Consensus 113 ~ 113 (662)
T PRK01747 113 H 113 (662)
T ss_pred H
Confidence 3
No 216
>COG3876 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.28 E-value=20 Score=37.42 Aligned_cols=73 Identities=15% Similarity=0.157 Sum_probs=45.4
Q ss_pred HhhcCCCCcccCC---CCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHh
Q 011546 109 EVLTNPKAGFYIN---RDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGAS 183 (483)
Q Consensus 109 ~aLY~P~~GYY~~---~~~~G~~GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~ 183 (483)
.|||.|+||||.. ++.+|..-|+.|---+=++||+.=-- -.++++..+. --+.|=++|.-.=|...-++.+.+
T Consensus 75 ~aL~~pEHG~rG~~qage~vg~y~d~~tgipvySLyg~~~~P-t~emle~~DV-~vfDiQDvG~R~Ytyiytm~yame 150 (409)
T COG3876 75 TALCTPEHGYRGAAQAGETVGNYPDRKTGIPVYSLYGVKEKP-TKEMLEDCDV-FVFDIQDVGVRSYTYIYTMAYAME 150 (409)
T ss_pred EEEeccccccccccccccccCCCcccccCCeEEEeeecccCC-CHHHHhcCCE-EEEechhccceehhHHHHHHHHHH
Confidence 4899999999984 35688889999986665688763100 0123333221 123455778766666666555554
No 217
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=25.36 E-value=4.1e+02 Score=24.89 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=33.8
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCcc--ccceEEEEecChhhHHHHHHhccc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFT--ESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~--~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
-.|++-=||+||+.---.......+... +.+.++-+|+++...+.-++++..
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ 83 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA 83 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH
T ss_pred CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh
Confidence 4899999999998866554444322011 133578899999998888888753
No 218
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=24.76 E-value=1.6e+02 Score=29.87 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 011546 139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (483)
Q Consensus 139 ~~FGe~Ia~~i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~ 208 (483)
+.|-|.||-.+++.........| ....||||.|.+...++..- .+ .+++++.|-.|.+.-+
T Consensus 52 dylkeeig~rlaDrvfD~kk~fp-~a~diGcs~G~v~rhl~~e~------ve--kli~~DtS~~M~~s~~ 112 (325)
T KOG2940|consen 52 DYLKEEIGDRLADRVFDCKKSFP-TAFDIGCSLGAVKRHLRGEG------VE--KLIMMDTSYDMIKSCR 112 (325)
T ss_pred hHHHHHHHHHHHHHHHHHhhhCc-ceeecccchhhhhHHHHhcc------hh--heeeeecchHHHHHhh
Confidence 67788888888877766654333 78999999999999886421 11 5788999998865433
No 219
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=24.55 E-value=3.9e+02 Score=28.38 Aligned_cols=78 Identities=22% Similarity=0.284 Sum_probs=45.6
Q ss_pred CCC-CCCCccCCCC-hhHHHHHHHHHHHHHHHH-----H-cCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEE
Q 011546 124 VFG-AEGDFITSPE-VSQMFGEMVGVWAMCLWE-----Q-MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIH 195 (483)
Q Consensus 124 ~~G-~~GDFiTSpe-Is~~FGe~Ia~~i~~~w~-----~-~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~ 195 (483)
.-| ..|.|+++-+ .+..|-+... .+..++. . .|....-..|+.|+|.|+++..||. .+| ++-
T Consensus 134 ~~G~~l~~~~~~~~~~~~~~~~sm~-~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~---~fp------~ik 203 (342)
T KOG3178|consen 134 AHGMMLGGYGGADERFSKDFNGSMS-FLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLS---KYP------HIK 203 (342)
T ss_pred ccchhhhhhcccccccHHHHHHHHH-HHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHH---hCC------CCc
Confidence 357 6788888855 3444433221 1111222 1 1222345899999999999999987 334 245
Q ss_pred EEecChhhHHHHHHhc
Q 011546 196 LVECSPTLQKLQHHNL 211 (483)
Q Consensus 196 iVE~Sp~Lr~~Q~~~L 211 (483)
+|+.-...--.+++.+
T Consensus 204 ~infdlp~v~~~a~~~ 219 (342)
T KOG3178|consen 204 GINFDLPFVLAAAPYL 219 (342)
T ss_pred eeecCHHHHHhhhhhh
Confidence 6666666555555555
No 220
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=23.75 E-value=1.6e+02 Score=23.51 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=25.1
Q ss_pred EEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 011546 164 LVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (483)
Q Consensus 164 IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~ 209 (483)
++++|||.|... .+..+.. .. ..+.-+|+|+.+...++.
T Consensus 52 ~ld~~~g~g~~~--~~~~~~~--~~---~~~~~~d~~~~~~~~~~~ 90 (257)
T COG0500 52 VLDIGCGTGRLA--LLARLGG--RG---AYVVGVDLSPEMLALARA 90 (257)
T ss_pred eEEecCCcCHHH--HHHHhCC--CC---ceEEEEeCCHHHHHHHHh
Confidence 999999999977 2222211 11 234448999988777443
No 221
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=23.54 E-value=1.1e+02 Score=32.51 Aligned_cols=91 Identities=16% Similarity=0.094 Sum_probs=50.1
Q ss_pred CCCcEEEEchhHHHHHHHHHHHhc-cCCeEEEEEeCCCCC-CcCC-ccce--eccccccCCCCCCCccccccccCHHHHH
Q 011546 315 EKLEHIEVCAKAMELTGAMAKRIG-SDGGGALIIDYGLNG-VVTD-SLQA--IRKHKFVDLFDNPGSADLSAYVDFASIS 389 (483)
Q Consensus 315 ~~g~~~Ei~~~a~~~l~~la~~l~-~~~G~~LiIDYG~~~-~~~g-TLr~--yr~H~~~dpl~~PG~~DITAhVdF~~L~ 389 (483)
|.|.-+=--|++..++..|-+.=. +-|--+--|-|+... ...+ .+=+ |+=| +.|..+-| -+-|.|..|.
T Consensus 229 pGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~~p~fG~kY~F~-LedaVdcP-----EylV~F~~l~ 302 (389)
T KOG1975|consen 229 PGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFDVPPFGAKYRFH-LEDAVDCP-----EYLVPFPTLV 302 (389)
T ss_pred CCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecccccCCCCccceEEEE-cccccCCc-----ceeeehHHHH
Confidence 456766667888888777754400 112234445565221 1111 2222 2111 11222222 2569999999
Q ss_pred HHHHHhcCceeeeccccHHHHHHh
Q 011546 390 HSAEEASERVSVHGPMTQSQFLGS 413 (483)
Q Consensus 390 ~~a~~~g~g~~~~g~~tQ~~FL~~ 413 (483)
..|++. |++++--.+=.+|+..
T Consensus 303 ~lae~y--~LeLv~~k~F~df~~e 324 (389)
T KOG1975|consen 303 SLAEEY--GLELVFVKPFADFYEE 324 (389)
T ss_pred HHHHhc--CcEEEEeccHHHHHHH
Confidence 999999 5777666677777764
No 222
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=23.52 E-value=2.7e+02 Score=28.80 Aligned_cols=45 Identities=16% Similarity=0.102 Sum_probs=36.6
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 011546 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (483)
Q Consensus 162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~ 212 (483)
-.+|+.++|.|..+.-||+.+. ...+++=+|.+|.+-+.=+++|.
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~~------~~g~VigiD~D~~al~~ak~~L~ 65 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERLG------PKGRLIAIDRDPDAIAAAKDRLK 65 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhCC------CCCEEEEEcCCHHHHHHHHHhhc
Confidence 4899999999999999987542 22468889999999888777774
No 223
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=22.91 E-value=1.4e+02 Score=30.49 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=36.5
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 011546 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (483)
Q Consensus 161 ~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~ 213 (483)
+..++++||..|+|...|...+. . ..+.=|+|.|.|-+.-++.+..
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~------~-r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFG------P-RRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhc------c-ceeeEeeccHHHHHHHHHhccc
Confidence 45899999999999999865432 2 2477799999998888887754
No 224
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=22.89 E-value=1.5e+02 Score=28.90 Aligned_cols=49 Identities=18% Similarity=0.123 Sum_probs=31.8
Q ss_pred HHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 011546 149 AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (483)
Q Consensus 149 i~~~w~~~g~p~~~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (483)
+.+.|..++.+...+|+--|||+|.-|.-+ .... .+++-||+|+.-.+.
T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~L----a~~G-----~~VvGvDls~~Ai~~ 74 (218)
T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWL----AEQG-----HDVVGVDLSPTAIEQ 74 (218)
T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHH----HHTT-----EEEEEEES-HHHHHH
T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHH----HHCC-----CeEEEEecCHHHHHH
Confidence 345555555555679999999999843333 2221 378899999986554
No 225
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=22.10 E-value=81 Score=31.25 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=14.0
Q ss_pred CCCCCcEEEEEcCCcchhHHHH
Q 011546 157 GQPNRVNLVELGPGRGTLMADL 178 (483)
Q Consensus 157 g~p~~~~IvEiGaG~GtLa~DI 178 (483)
..|....|.++|||.+.||..+
T Consensus 69 ~~~~~~viaD~GCGdA~la~~~ 90 (219)
T PF05148_consen 69 KRPKSLVIADFGCGDAKLAKAV 90 (219)
T ss_dssp TS-TTS-EEEES-TT-HHHHH-
T ss_pred hcCCCEEEEECCCchHHHHHhc
Confidence 3566789999999999999443
No 226
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=20.79 E-value=1.8e+02 Score=25.51 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=20.0
Q ss_pred EEcCCcc--hhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 011546 166 ELGPGRG--TLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (483)
Q Consensus 166 EiGaG~G--tLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~ 210 (483)
++||+.| +...-.+.. +.. ...+++.+|++|.+.+.=+++
T Consensus 1 DvGA~~G~~~~~~~~~~~-~~~----~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEK-KCG----PGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHH-HTS------SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHH-HcC----CCCEEEEEECCHHHHHHHhHH
Confidence 6899999 433332221 112 223789999999976655555
Done!