BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011547
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O7D|D Chain D, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 282
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 96/205 (46%), Gaps = 62/205 (30%)
Query: 177 GTDKDPQASGAYVFRPNDTFSINSESQVQLTIVRGPLLDEVHQQLSPWISQI-------R 229
G + QASGAY+FRPN + Q +V+ L+ EVHQ S W SQ+ R
Sbjct: 47 GNNLSSQASGAYIFRPNQNKPLFVSHWAQTHLVKASLVQEVHQNFSAWCSQVVRLYPRQR 106
Query: 230 DFRTDWDL-----------------------------------------------QVNQL 242
+W + ++NQ
Sbjct: 107 HLELEWTVGPIPVGDGWGKEVISRFDTALATRGLFYTDSNGREILERRRNYRPTWKLNQT 166
Query: 243 --VAGNYYPVNLGIYVQDDNAELSLLVDRSVGGSSLVDGQIELMLHRRLLHDDVRGVGEV 300
VAGNYYPVN IY+ D N +L++L DRS GGSSL DG +ELM+HRRLL DD RGVGE
Sbjct: 167 EPVAGNYYPVNSRIYITDGNMQLTVLTDRSQGGSSLRDGSLELMVHRRLLKDDARGVGEP 226
Query: 301 LNETVCVQNECEGLTIQGKFYLRID 325
LN+ E GL ++G+ + +D
Sbjct: 227 LNK------EGSGLWVRGRHLVLLD 245
>pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Deoxymannojirimicin
pdb|1HWW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Swainsonine
Length = 1015
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 134/317 (42%), Gaps = 67/317 (21%)
Query: 41 VSSEKVIVKDSGGRTVESQLLPLSNATLRIRNRYVKAYLGKAPSETLKYWLAFSASVPPL 100
VSS V V D VE+Q+ P+ + + + T KY + F A VPP+
Sbjct: 543 VSSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTIHPQ-----GSTTKYRIIFKARVPPM 597
Query: 101 GFSTY--TVSIAKPTGPSSTISMVYTSEDSTSNSIEVGQGNLRLLYSADEGKLTHYVNNR 158
G +TY T+S +KP S +++ + S+ +GQ + + D +++ V N
Sbjct: 598 GLATYVLTISDSKPEHTSYASNLLLRKNPT---SLPLGQYPEDVKF-GDPREISLRVGNG 653
Query: 159 NKVTAS-AGQXXXXXXGND-------------GTDKDPQASGAYVFRPN----------- 193
+ S G D G SGAY+F PN
Sbjct: 654 PTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQP 713
Query: 194 ----------DTFSINSESQVQLTIVRG------PLLD-------EVHQQLSPWISQIRD 230
+ S+ S V TI+RG L+D E+ +L I
Sbjct: 714 VVLVTKGKLESSVSVGLPSVVHQTIMRGGAPEIRNLVDIGSLDNTEIVMRLETHIDSGDI 773
Query: 231 FRTDWD-------LQVNQL-VAGNYYPVNLGIYVQDDNAELSLLVDRSVGGSSLVDGQIE 282
F TD + ++++L + NYYP+ G++++D N L+LL + +GGSSL G++E
Sbjct: 774 FYTDLNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSSLASGELE 833
Query: 283 LMLHRRLLHDDVRGVGE 299
+M RRL DD RG+G+
Sbjct: 834 IMQDRRLASDDERGLGQ 850
>pdb|1PS3|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine
Length = 1045
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 134/317 (42%), Gaps = 67/317 (21%)
Query: 41 VSSEKVIVKDSGGRTVESQLLPLSNATLRIRNRYVKAYLGKAPSETLKYWLAFSASVPPL 100
VSS V V D VE+Q+ P+ + + + T KY + F A VPP+
Sbjct: 573 VSSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTIHPQ-----GSTTKYRIIFKARVPPM 627
Query: 101 GFSTY--TVSIAKPTGPSSTISMVYTSEDSTSNSIEVGQGNLRLLYSADEGKLTHYVNNR 158
G +TY T+S +KP S +++ + S+ +GQ + + D +++ V N
Sbjct: 628 GLATYVLTISDSKPEHTSYASNLLLRKNPT---SLPLGQYPEDVKF-GDPREISLRVGNG 683
Query: 159 NKVTAS-AGQXXXXXXGND-------------GTDKDPQASGAYVFRPN----------- 193
+ S G D G SGAY+F PN
Sbjct: 684 PTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQP 743
Query: 194 ----------DTFSINSESQVQLTIVRG------PLLD-------EVHQQLSPWISQIRD 230
+ S+ S V TI+RG L+D E+ +L I
Sbjct: 744 VVLVTKGKLESSVSVGLPSVVHQTIMRGGAPEIRNLVDIGSLDNTEIVMRLETHIDSGDI 803
Query: 231 FRTDWD-------LQVNQL-VAGNYYPVNLGIYVQDDNAELSLLVDRSVGGSSLVDGQIE 282
F TD + ++++L + NYYP+ G++++D N L+LL + +GGSSL G++E
Sbjct: 804 FYTDLNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSSLASGELE 863
Query: 283 LMLHRRLLHDDVRGVGE 299
+M RRL DD RG+G+
Sbjct: 864 IMQDRRLASDDERGLGQ 880
>pdb|3CV5|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With 3alpha,6alpha-Mannopentaose
pdb|3CZN|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant) In
Complex With Gnman5gn
pdb|3CZS|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant)
pdb|3BUD|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
With An Empty Active Site
pdb|3BUI|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Tris
pdb|3BUQ|A Chain A, Golgi Alpha-Mannosidase Ii D204a Catalytic Nucleophile
Mutant With Bound Mannose.
pdb|3BVT|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
(Alpha-D-Mannopyranosyl)-(1->3)-S-Alpha-D-
Mannopyranoside
pdb|3BVU|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With
Methyl(Alpha-D-Mannopyranosyl)-(1->3)-S-[(Alpha-D-
Mannopyranosyl)-(1- >6)]-Alpha-D-Mannopyranoside
pdb|3BVV|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
Alpha-D-Mannopyranosyl-(1->3)-[6-Thio-
Alpha-D-Mannopyranosyl-(1->6)]-Beta-D-Mannopyranoside
pdb|3BVW|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-Alpha-D-Mannopyranosyl- (1->3)-
[alpha-D-Mannopyranosyl-(1->6)-6-Thio-Alpha-D-
Mannopyranosyl- (1->6)]-Beta-D-Mannopyranoside
pdb|3BVX|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-(Alpha-D-Mannopyranosyl)- (1->3)-
[(Alpha-D-Mannopyranosyl)-(1->6)-(Alpha-D-
Mannopyranosyl)- (1->6)]-Beta-D-Mannopyranoside
Length = 1045
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 134/317 (42%), Gaps = 67/317 (21%)
Query: 41 VSSEKVIVKDSGGRTVESQLLPLSNATLRIRNRYVKAYLGKAPSETLKYWLAFSASVPPL 100
VSS V V D VE+Q+ P+ + + + T KY + F A VPP+
Sbjct: 573 VSSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTIHPQ-----GSTTKYRIIFKARVPPM 627
Query: 101 GFSTY--TVSIAKPTGPSSTISMVYTSEDSTSNSIEVGQGNLRLLYSADEGKLTHYVNNR 158
G +TY T+S +KP S +++ + S+ +GQ + + D +++ V N
Sbjct: 628 GLATYVLTISDSKPEHTSYASNLLLRKNPT---SLPLGQYPEDVKF-GDPREISLRVGNG 683
Query: 159 NKVTAS-AGQXXXXXXGND-------------GTDKDPQASGAYVFRPN----------- 193
+ S G D G SGAY+F PN
Sbjct: 684 PTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQP 743
Query: 194 ----------DTFSINSESQVQLTIVRG------PLLD-------EVHQQLSPWISQIRD 230
+ S+ S V TI+RG L+D E+ +L I
Sbjct: 744 VVLVTKGKLESSVSVGLPSVVHQTIMRGGAPEIRNLVDIGSLDNTEIVMRLETHIDSGDI 803
Query: 231 FRTDWD-------LQVNQL-VAGNYYPVNLGIYVQDDNAELSLLVDRSVGGSSLVDGQIE 282
F TD + ++++L + NYYP+ G++++D N L+LL + +GGSSL G++E
Sbjct: 804 FYTDLNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSSLASGELE 863
Query: 283 LMLHRRLLHDDVRGVGE 299
+M RRL DD RG+G+
Sbjct: 864 IMQDRRLASDDERGLGQ 880
>pdb|1QWU|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
5-F-Guloside
pdb|1QX1|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
2-F-Mannosyl-F
pdb|3BUP|A Chain A, Golgi Alpha-Mannosidase Ii D341n Acid-Base Catalyst Mutant
With Bound Mannose
Length = 1045
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 134/317 (42%), Gaps = 67/317 (21%)
Query: 41 VSSEKVIVKDSGGRTVESQLLPLSNATLRIRNRYVKAYLGKAPSETLKYWLAFSASVPPL 100
VSS V V D VE+Q+ P+ + + + T KY + F A VPP+
Sbjct: 573 VSSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTIHPQ-----GSTTKYRIIFKARVPPM 627
Query: 101 GFSTY--TVSIAKPTGPSSTISMVYTSEDSTSNSIEVGQGNLRLLYSADEGKLTHYVNNR 158
G +TY T+S +KP S +++ + S+ +GQ + + D +++ V N
Sbjct: 628 GLATYVLTISDSKPEHTSYASNLLLRKNPT---SLPLGQYPEDVKF-GDPREISLRVGNG 683
Query: 159 NKVTAS-AGQXXXXXXGND-------------GTDKDPQASGAYVFRPN----------- 193
+ S G D G SGAY+F PN
Sbjct: 684 PTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQP 743
Query: 194 ----------DTFSINSESQVQLTIVRG------PLLD-------EVHQQLSPWISQIRD 230
+ S+ S V TI+RG L+D E+ +L I
Sbjct: 744 VVLVTKGKLESSVSVGLPSVVHQTIMRGGAPEIRNLVDIGSLDNTEIVMRLETHIDSGDI 803
Query: 231 FRTDWD-------LQVNQL-VAGNYYPVNLGIYVQDDNAELSLLVDRSVGGSSLVDGQIE 282
F TD + ++++L + NYYP+ G++++D N L+LL + +GGSSL G++E
Sbjct: 804 FYTDLNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSSLASGELE 863
Query: 283 LMLHRRLLHDDVRGVGE 299
+M RRL DD RG+G+
Sbjct: 864 IMQDRRLASDDERGLGQ 880
>pdb|3DX3|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3s,4r,5r)-5-Aminocyclopentane-1,2,3,4-Tetraol
Length = 1045
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 134/317 (42%), Gaps = 67/317 (21%)
Query: 41 VSSEKVIVKDSGGRTVESQLLPLSNATLRIRNRYVKAYLGKAPSETLKYWLAFSASVPPL 100
VSS V V D VE+Q+ P+ + + + T KY + F A VPP+
Sbjct: 573 VSSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTIHPQ-----GSTTKYRIIFKARVPPM 627
Query: 101 GFSTY--TVSIAKPTGPSSTISMVYTSEDSTSNSIEVGQGNLRLLYSADEGKLTHYVNNR 158
G +TY T+S +KP S +++ + S+ +GQ + + D +++ V N
Sbjct: 628 GLATYVLTISDSKPEHTSYASNLLLRKNPT---SLPLGQYPEDVKF-GDPREISLRVGNG 683
Query: 159 NKVTAS-AGQXXXXXXGND-------------GTDKDPQASGAYVFRPN----------- 193
+ S G D G SGAY+F PN
Sbjct: 684 PTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQP 743
Query: 194 ----------DTFSINSESQVQLTIVRG------PLLD-------EVHQQLSPWISQIRD 230
+ S+ S V TI+RG L+D E+ +L I
Sbjct: 744 VVLVTKGKLESSVSVGLPSVVHQTIMRGGAPEIRNLVDIGSLDNTEIVMRLETHIDSGDI 803
Query: 231 FRTDWD-------LQVNQL-VAGNYYPVNLGIYVQDDNAELSLLVDRSVGGSSLVDGQIE 282
F TD + ++++L + NYYP+ G++++D N L+LL + +GGSSL G++E
Sbjct: 804 FYTDLNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSSLASGELE 863
Query: 283 LMLHRRLLHDDVRGVGE 299
+M RRL DD RG+G+
Sbjct: 864 IMQDRRLASDDERGLGQ 880
>pdb|1QWN|A Chain A, Golgi Alpha-Mannosidase Ii Covalent Intermediate Complex
With 5- Fluoro-Gulosyl-Fluoride
pdb|1R33|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
5-Thio-D-Mannopyranosylamine
pdb|1R34|A Chain A, Golgi Alpha-Mannosidase Ii Complex With 5-Thio-D-
Mannopyranosylamidinium Salt
pdb|1TQS|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Salacinol
pdb|1TQT|A Chain A, Golgi Alpha-mannosidase Ii In Complex With A Diastereomer
Of Salacinol
pdb|1TQU|A Chain A, Golgi Alpha-mannosidase Ii In Complex With The Salacinol
Analog Ghavamiol
pdb|1TQV|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Seleno-Salacinol (Blintol)
pdb|1TQW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With A Diastereomer
Of Seleno- Salacinol
pdb|2ALW|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Noeuromycin
pdb|2F7O|A Chain A, Golgi Alpha-mannosidase Ii Complex With Mannostatin A
pdb|2F7P|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Benzyl-Mannostatin
A
pdb|2F18|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1A|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1s)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1B|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s,5r)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)-5-Methylpyrrolidine-
3,4-Diol
pdb|2F7Q|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Aminocyclopentitetrol
pdb|2F7R|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Benzyl-Aminocyclopentitetrol
pdb|2FYV|A Chain A, Golgi Alpha-Mannosidase Ii Complex With An Amino-Salacinol
Carboxylate Analog
pdb|2OW6|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(1r,5s,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-5,7,8-Triol Chloride
pdb|2OW7|A Chain A, Golgi Alpha-Mannosidase Ii Complex With (1r,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-7,8-Diol Chloride
pdb|3BLB|A Chain A, Crystal Structure Of Golgi Mannosidase Ii In Complex With
Swainsonine At 1.3 Angstrom Resolution
pdb|3BUB|A Chain A, Golgi Alpha-mannosidase Ii With An Empty Active Site
pdb|3DDF|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Pyrrolidin-2-One
pdb|3DDG|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Methylpyrrolidin-2-One
pdb|3D4Y|A Chain A, Golgi Mannosidase Ii Complex With Mannoimidazole
pdb|3D4Z|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Imidazole
pdb|3D50|A Chain A, Golgi Mannosidase Ii Complex With
N-Octyl-6-Epi-Valienamine
pdb|3D51|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Hydroxyiminolactam
pdb|3D52|A Chain A, Golgi Mannosidase Ii Complex With An N-Aryl Carbamate
Derivative Of Gluco-Hydroxyiminolactam
pdb|3DX0|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin A
At Ph 5.75
pdb|3DX1|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1s,2s, 3r,4r)-4-Aminocyclopentane-1,2,3-Triol
pdb|3DX2|A Chain A, Golgi Mannosidase Ii Complex With Mannostatin B
pdb|3DX4|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3r,4s,5r)-4-amino-5-methoxycyclopentane-1,2,3-triol
pdb|3EJP|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(Phenyl)ethyl]-Swainsonine
pdb|3EJQ|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substitued
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(4-Methylphenyl)ethyl]-Swainsonine
pdb|3EJR|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substitued
Swainsonine Analog:
(5r)-5-[2'-oxo-2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJS|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substituted
Swainsonine Analog:
(5s)-5-[2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJT|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5r)-5-[2'-(4-Tert-Butylphenyl)ethyl]-Swainsonine
pdb|3EJU|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5s)-5-[2'-Oxo-2'-(4-Tert-Butylphenyl)ethyl]-
Swainsonine
Length = 1045
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 134/317 (42%), Gaps = 67/317 (21%)
Query: 41 VSSEKVIVKDSGGRTVESQLLPLSNATLRIRNRYVKAYLGKAPSETLKYWLAFSASVPPL 100
VSS V V D VE+Q+ P+ + + + T KY + F A VPP+
Sbjct: 573 VSSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTIHPQ-----GSTTKYRIIFKARVPPM 627
Query: 101 GFSTY--TVSIAKPTGPSSTISMVYTSEDSTSNSIEVGQGNLRLLYSADEGKLTHYVNNR 158
G +TY T+S +KP S +++ + S+ +GQ + + D +++ V N
Sbjct: 628 GLATYVLTISDSKPEHTSYASNLLLRKNPT---SLPLGQYPEDVKF-GDPREISLRVGNG 683
Query: 159 NKVTAS-AGQXXXXXXGND-------------GTDKDPQASGAYVFRPN----------- 193
+ S G D G SGAY+F PN
Sbjct: 684 PTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQP 743
Query: 194 ----------DTFSINSESQVQLTIVRG------PLLD-------EVHQQLSPWISQIRD 230
+ S+ S V TI+RG L+D E+ +L I
Sbjct: 744 VVLVTKGKLESSVSVGLPSVVHQTIMRGGAPEIRNLVDIGSLDNTEIVMRLETHIDSGDI 803
Query: 231 FRTDWD-------LQVNQL-VAGNYYPVNLGIYVQDDNAELSLLVDRSVGGSSLVDGQIE 282
F TD + ++++L + NYYP+ G++++D N L+LL + +GGSSL G++E
Sbjct: 804 FYTDLNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSSLASGELE 863
Query: 283 LMLHRRLLHDDVRGVGE 299
+M RRL DD RG+G+
Sbjct: 864 IMQDRRLASDDERGLGQ 880
>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii
Length = 1015
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 130/317 (41%), Gaps = 67/317 (21%)
Query: 41 VSSEKVIVKDSGGRTVESQLLPLSNATLRIRNRYVKAYLGKAPSETLKYWLAFSASVPPL 100
VSS V V D VE+Q+ P+ + + + T KY + F A VPP
Sbjct: 543 VSSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTIHPQ-----GSTTKYRIIFKARVPPX 597
Query: 101 GFSTY--TVSIAKPTGPSSTISMVYTSEDSTSNSIEVGQGNLRLLYSADEGKLTHYVNNR 158
G +TY T+S +KP S +++ + S+ +GQ + + D +++ V N
Sbjct: 598 GLATYVLTISDSKPEHTSYASNLLLRKNPT---SLPLGQYPEDVKF-GDPREISLRVGNG 653
Query: 159 NKVTAS-AGQXXXXXXGND-------------GTDKDPQASGAYVFRPN----------- 193
+ S G D G SGAY+F PN
Sbjct: 654 PTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQP 713
Query: 194 ----------DTFSINSESQVQLTIVRG------PLLD-------EVHQQLSPWISQIRD 230
+ S+ S V TI RG L+D E+ +L I
Sbjct: 714 VVLVTKGKLESSVSVGLPSVVHQTIXRGGAPEIRNLVDIGSLDNTEIVXRLETHIDSGDI 773
Query: 231 FRTDWD-------LQVNQL-VAGNYYPVNLGIYVQDDNAELSLLVDRSVGGSSLVDGQIE 282
F TD + ++++L + NYYP+ G +++D N L+LL + +GGSSL G++E
Sbjct: 774 FYTDLNGLQFIKRRRLDKLPLQANYYPIPSGXFIEDANTRLTLLTGQPLGGSSLASGELE 833
Query: 283 LMLHRRLLHDDVRGVGE 299
+ RRL DD RG+G+
Sbjct: 834 IXQDRRLASDDERGLGQ 850
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 261 AELSLLVDRSVGGSSLVDGQIELMLHRRLLHDDVRGVGEVLNETVCVQNECEGLTIQGKF 320
A L VD +GG ++ I +L+ R H +R G V ++ Q C+G+ + F
Sbjct: 538 ANYWLPVDIYIGG---IEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAF 594
Query: 321 YLRIDHLGEGA--NW 333
Y ++GE NW
Sbjct: 595 Y----YVGENGERNW 605
>pdb|1O7D|C Chain C, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 159
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 20/70 (28%)
Query: 39 LQVSSEKVIVKDSGGRTVESQLLPLSNATLRIRNRYVKAYLGKAPSETLKYWLAFSASVP 98
L VS +VKD GG+ V S ++ + PS + L FSA VP
Sbjct: 98 LPVSKHVYLVKDPGGKIVPSDVVTI-------------------PSSDSQE-LLFSALVP 137
Query: 99 PLGFSTYTVS 108
+GFS Y+VS
Sbjct: 138 AVGFSIYSVS 147
>pdb|1EJO|H Chain H, Fab Fragment Of Neutralising Monoclonal Antibody 4c4
Complexed With G-H Loop From Fmdv
Length = 220
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 224 WISQIRDFRTDWDLQVNQLVAGNYYP--VNLGIYVQDDNAELSLLVDRS 270
W+ Q + R +W ++ A YYP V + DDNAE +L + S
Sbjct: 36 WVRQTPEKRLEWVATISSGGAYTYYPDSVKGRFTISDDNAESTLYLQMS 84
>pdb|1LRV|A Chain A, A Leucine-Rich Repeat Variant With A Novel Repetitive
Protein Structural Motif
Length = 244
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 231 FRTDWDLQVNQLVAGNYYPVNLGIYVQDDNAELSLLVDRSVGGSSLVDGQIELMLHRRLL 290
F D D QV +LVA +LG+ QD E+ +V + G L++ LL
Sbjct: 154 FMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLE----------LL 203
Query: 291 HD 292
HD
Sbjct: 204 HD 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,291,078
Number of Sequences: 62578
Number of extensions: 549901
Number of successful extensions: 1626
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1600
Number of HSP's gapped (non-prelim): 29
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)