Query 011548
Match_columns 483
No_of_seqs 141 out of 1573
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 02:35:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 1.8E-54 3.9E-59 427.5 35.1 407 28-470 30-437 (437)
2 PTZ00206 amino acid transporte 100.0 5.4E-54 1.2E-58 437.0 32.5 400 35-468 59-465 (467)
3 KOG1304 Amino acid transporter 100.0 1.2E-51 2.5E-56 399.9 28.7 388 34-466 45-448 (449)
4 PLN03074 auxin influx permease 100.0 6.9E-48 1.5E-52 390.1 30.9 398 33-481 43-469 (473)
5 PF01490 Aa_trans: Transmembra 100.0 1.8E-51 3.8E-56 417.0 0.8 403 34-464 1-408 (409)
6 KOG1305 Amino acid transporter 100.0 1.7E-44 3.6E-49 355.2 27.4 401 33-470 3-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 1.7E-41 3.6E-46 309.5 4.6 411 30-477 111-524 (524)
8 COG0814 SdaC Amino acid permea 100.0 3.2E-32 6.9E-37 272.2 31.7 371 32-438 5-386 (415)
9 PRK10483 tryptophan permease; 100.0 4.1E-28 8.8E-33 238.3 28.7 393 31-473 6-412 (414)
10 PRK09664 tryptophan permease T 100.0 3.9E-28 8.4E-33 238.2 28.4 394 34-474 7-414 (415)
11 PF03222 Trp_Tyr_perm: Tryptop 100.0 2.9E-26 6.2E-31 227.8 30.8 353 34-437 1-367 (394)
12 PRK15132 tyrosine transporter 100.0 4.1E-26 8.8E-31 225.5 27.7 385 37-473 4-401 (403)
13 TIGR00837 araaP aromatic amino 99.9 1.9E-25 4.1E-30 223.9 22.1 345 42-435 3-359 (381)
14 PRK13629 threonine/serine tran 99.9 9.9E-22 2.1E-26 193.1 29.8 391 40-466 23-441 (443)
15 TIGR00814 stp serine transport 99.9 1.6E-19 3.4E-24 179.3 26.0 360 39-434 6-378 (397)
16 PRK10655 potE putrescine trans 99.8 9.8E-17 2.1E-21 163.9 30.7 362 32-435 4-376 (438)
17 PRK15049 L-asparagine permease 99.8 1.4E-16 2.9E-21 164.6 30.3 371 31-434 25-405 (499)
18 PRK10249 phenylalanine transpo 99.8 2.7E-16 5.8E-21 161.2 30.1 368 31-434 18-394 (458)
19 PRK10644 arginine:agmatin anti 99.8 6.4E-16 1.4E-20 158.1 31.7 245 31-304 5-251 (445)
20 PRK10435 cadB lysine/cadaverin 99.8 1E-15 2.2E-20 156.0 30.4 363 31-435 2-379 (435)
21 TIGR03810 arg_ornith_anti argi 99.8 1.5E-15 3.3E-20 156.2 31.6 366 34-435 1-380 (468)
22 PRK10238 aromatic amino acid t 99.7 9E-16 2E-20 157.2 28.7 370 29-434 7-385 (456)
23 PRK11387 S-methylmethionine tr 99.7 1.7E-15 3.6E-20 156.0 30.3 301 30-354 10-320 (471)
24 KOG1287 Amino acid transporter 99.7 8.8E-17 1.9E-21 158.4 19.2 372 28-437 6-388 (479)
25 TIGR00905 2A0302 transporter, 99.7 2.6E-15 5.6E-20 154.7 30.5 369 33-435 6-384 (473)
26 PRK11021 putative transporter; 99.7 6.2E-15 1.3E-19 149.3 32.8 355 37-436 2-363 (410)
27 PRK10746 putative transport pr 99.7 3.3E-15 7.2E-20 153.0 30.1 371 31-435 7-388 (461)
28 TIGR01773 GABAperm gamma-amino 99.7 3.5E-15 7.7E-20 153.0 30.2 369 29-434 7-387 (452)
29 PRK11049 D-alanine/D-serine/gl 99.7 5E-15 1.1E-19 152.3 30.6 373 29-435 15-399 (469)
30 PRK10580 proY putative proline 99.7 1.8E-14 3.9E-19 147.9 32.7 369 29-435 4-385 (457)
31 PRK10836 lysine transporter; P 99.7 1.2E-14 2.6E-19 150.3 30.8 371 28-434 9-398 (489)
32 TIGR00909 2A0306 amino acid tr 99.7 7E-15 1.5E-19 150.0 28.5 363 33-434 2-375 (429)
33 TIGR00913 2A0310 amino acid pe 99.7 1.1E-14 2.3E-19 150.7 29.9 368 33-434 1-391 (478)
34 COG1113 AnsP Gamma-aminobutyra 99.7 2.1E-15 4.7E-20 146.2 21.7 370 29-434 8-388 (462)
35 TIGR00906 2A0303 cationic amin 99.7 2.2E-14 4.7E-19 149.8 30.9 375 30-434 24-410 (557)
36 TIGR00930 2a30 K-Cl cotranspor 99.7 1.6E-13 3.4E-18 149.9 34.6 256 32-300 74-336 (953)
37 PRK11357 frlA putative fructos 99.7 5.3E-14 1.2E-18 144.0 27.4 243 30-300 4-251 (445)
38 TIGR00908 2A0305 ethanolamine 99.7 7E-14 1.5E-18 143.1 28.1 242 30-297 3-244 (442)
39 TIGR00911 2A0308 L-type amino 99.7 6.5E-14 1.4E-18 145.5 27.3 253 28-304 36-295 (501)
40 PRK10197 gamma-aminobutyrate t 99.6 2.4E-13 5.3E-18 138.8 28.4 351 45-434 3-367 (446)
41 PF13520 AA_permease_2: Amino 99.6 1.4E-12 3.1E-17 132.9 25.9 363 37-436 2-376 (426)
42 TIGR00912 2A0309 spore germina 99.5 2.1E-12 4.5E-17 128.6 24.7 285 35-355 2-297 (359)
43 COG0833 LysP Amino acid transp 99.5 4.2E-12 9E-17 126.2 24.8 367 31-433 41-426 (541)
44 COG0531 PotE Amino acid transp 99.5 9.1E-12 2E-16 128.5 27.2 371 28-435 6-389 (466)
45 TIGR00907 2A0304 amino acid pe 99.5 6.5E-11 1.4E-15 122.6 33.2 383 27-435 5-409 (482)
46 TIGR03428 ureacarb_perm permea 99.5 1.3E-10 2.9E-15 119.8 35.3 264 27-304 6-273 (475)
47 PRK15238 inner membrane transp 99.4 5.4E-10 1.2E-14 116.0 32.2 254 32-300 5-267 (496)
48 TIGR03813 put_Glu_GABA_T putat 99.4 6E-10 1.3E-14 115.0 29.2 367 35-433 2-383 (474)
49 TIGR00910 2A0307_GadC glutamat 99.4 4.7E-10 1E-14 116.3 28.3 239 33-297 3-247 (507)
50 KOG1286 Amino acid transporter 99.3 1E-10 2.2E-15 120.3 18.1 375 30-433 26-421 (554)
51 PF00324 AA_permease: Amino ac 99.3 3.3E-11 7.3E-16 124.6 14.3 295 45-354 6-319 (478)
52 KOG3832 Predicted amino acid t 99.2 8E-11 1.7E-15 101.3 9.5 220 39-270 15-302 (319)
53 PF03845 Spore_permease: Spore 99.1 4.7E-08 1E-12 95.6 25.0 283 35-354 1-292 (320)
54 KOG1289 Amino acid transporter 98.8 7.3E-06 1.6E-10 82.2 27.2 263 27-308 41-316 (550)
55 TIGR00800 ncs1 NCS1 nucleoside 98.7 7.9E-06 1.7E-10 83.5 24.8 261 30-308 8-275 (442)
56 PRK11375 allantoin permease; P 98.7 5.5E-05 1.2E-09 77.9 30.2 271 64-354 57-341 (484)
57 COG3949 Uncharacterized membra 98.5 3E-05 6.4E-10 73.0 21.9 137 39-196 6-145 (349)
58 PRK12488 acetate permease; Pro 98.5 0.00089 1.9E-08 70.3 34.3 153 33-207 66-221 (549)
59 TIGR02119 panF sodium/pantothe 98.4 0.00077 1.7E-08 69.7 31.3 156 33-208 39-199 (471)
60 TIGR00813 sss transporter, SSS 98.4 0.00012 2.6E-09 74.2 24.5 152 34-206 3-156 (407)
61 PRK09442 panF sodium/panthothe 98.4 0.00082 1.8E-08 69.7 30.9 155 33-207 40-199 (483)
62 TIGR02358 thia_cytX probable h 98.3 0.00064 1.4E-08 68.2 27.4 226 39-306 8-234 (386)
63 TIGR02711 symport_actP cation/ 98.3 0.0021 4.6E-08 67.5 32.1 152 33-206 66-220 (549)
64 PF00474 SSF: Sodium:solute sy 98.3 1.8E-05 4E-10 80.1 16.3 156 33-209 5-163 (406)
65 COG0591 PutP Na+/proline sympo 98.3 0.0016 3.4E-08 67.4 30.6 303 33-356 37-360 (493)
66 PRK09395 actP acetate permease 98.3 0.0039 8.4E-08 65.7 32.7 151 33-205 68-221 (551)
67 PRK11017 codB cytosine permeas 98.1 0.0022 4.7E-08 64.8 25.6 206 63-305 38-244 (404)
68 COG1457 CodB Purine-cytosine p 98.1 0.0034 7.4E-08 62.8 25.6 272 106-433 84-359 (442)
69 TIGR02121 Na_Pro_sym sodium/pr 98.0 0.016 3.4E-07 60.2 30.2 156 33-205 35-195 (487)
70 COG1953 FUI1 Cytosine/uracil/t 98.0 0.017 3.6E-07 58.2 28.4 206 102-316 102-318 (497)
71 PRK15419 proline:sodium sympor 98.0 0.0086 1.9E-07 62.4 27.9 157 33-206 39-200 (502)
72 TIGR03648 Na_symport_lg probab 98.0 0.037 8.1E-07 58.4 35.9 149 33-202 31-181 (552)
73 TIGR00796 livcs branched-chain 97.9 0.0087 1.9E-07 59.4 25.0 74 44-128 3-79 (378)
74 COG4147 DhlC Predicted symport 97.8 0.043 9.4E-07 54.6 28.0 188 86-301 93-293 (529)
75 PRK10484 putative transporter; 97.7 0.097 2.1E-06 54.9 30.9 157 33-204 37-199 (523)
76 COG1914 MntH Mn2+ and Fe2+ tra 97.6 0.073 1.6E-06 53.3 26.2 54 382-435 325-378 (416)
77 PF02133 Transp_cyt_pur: Perme 97.5 0.00021 4.5E-09 73.3 7.6 249 32-302 5-259 (440)
78 PRK00701 manganese transport p 97.3 0.25 5.4E-06 50.3 30.6 45 104-148 95-139 (439)
79 KOG1288 Amino acid transporter 97.2 0.066 1.4E-06 55.5 19.9 234 55-299 88-349 (945)
80 PF02554 CstA: Carbon starvati 97.1 0.064 1.4E-06 52.1 18.5 114 28-146 44-157 (376)
81 TIGR00835 agcS amino acid carr 97.0 0.11 2.3E-06 52.3 20.1 85 34-124 45-138 (425)
82 KOG2082 K+/Cl- cotransporter K 97.0 0.44 9.6E-06 50.1 23.9 108 34-146 113-222 (1075)
83 PF01566 Nramp: Natural resist 95.9 2.1 4.5E-05 42.5 22.0 77 104-194 43-121 (358)
84 KOG2083 Na+/K+ symporter [Inor 95.6 0.073 1.6E-06 54.4 9.6 240 35-295 29-274 (643)
85 PRK15015 carbon starvation pro 95.6 0.13 2.8E-06 53.5 11.2 101 39-144 86-186 (701)
86 PF05525 Branch_AA_trans: Bran 95.5 2.5 5.5E-05 42.6 20.1 70 38-118 5-77 (427)
87 COG1966 CstA Carbon starvation 95.4 0.62 1.3E-05 47.6 15.2 112 27-143 43-154 (575)
88 KOG2349 Na+:iodide/myo-inosito 94.2 0.72 1.6E-05 48.0 12.4 246 33-304 44-302 (585)
89 PRK15433 branched-chain amino 93.7 9 0.0002 38.8 18.9 70 37-118 9-82 (439)
90 KOG2466 Uridine permease/thiam 92.8 2.4 5.3E-05 42.7 12.9 265 31-316 51-332 (572)
91 COG0814 SdaC Amino acid permea 92.4 0.92 2E-05 46.0 9.9 152 275-434 221-375 (415)
92 PF01235 Na_Ala_symp: Sodium:a 91.3 18 0.00038 36.5 18.1 86 29-116 12-101 (416)
93 COG0733 Na+-dependent transpor 90.6 20 0.00044 36.1 26.2 241 36-293 9-263 (439)
94 TIGR00796 livcs branched-chain 89.7 1.9 4.2E-05 42.9 9.0 68 102-182 254-321 (378)
95 PF00209 SNF: Sodium:neurotran 89.6 30 0.00064 36.3 24.3 101 37-149 6-111 (523)
96 PF05525 Branch_AA_trans: Bran 87.9 3.2 6.9E-05 41.9 9.3 69 102-183 260-328 (427)
97 COG1114 BrnQ Branched-chain am 84.3 5.2 0.00011 39.8 8.3 68 102-182 262-329 (431)
98 COG4145 PanF Na+/panthothenate 82.8 51 0.0011 32.5 21.2 245 34-308 39-301 (473)
99 PRK15433 branched-chain amino 80.4 8.3 0.00018 39.1 8.4 66 104-183 266-331 (439)
100 KOG1291 Mn2+ and Fe2+ transpor 79.5 76 0.0016 32.3 22.4 55 378-432 353-409 (503)
101 COG1114 BrnQ Branched-chain am 76.3 89 0.0019 31.4 20.5 71 38-120 7-81 (431)
102 PF02705 K_trans: K+ potassium 64.3 1.9E+02 0.0041 30.3 16.4 27 242-271 202-228 (534)
103 PF12794 MscS_TM: Mechanosensi 60.3 1.8E+02 0.0039 28.6 14.7 41 275-315 44-84 (340)
104 TIGR01197 nramp NRAMP (natural 56.1 2.3E+02 0.0049 28.5 28.6 45 104-148 65-109 (390)
105 PRK10745 trkD potassium transp 51.5 3.3E+02 0.0072 29.1 14.2 30 67-96 49-78 (622)
106 COG1115 AlsT Na+/alanine sympo 51.2 2.8E+02 0.0062 28.2 20.8 65 31-96 58-126 (452)
107 PLN00149 potassium transporter 49.6 4E+02 0.0086 29.4 17.5 56 243-304 270-325 (779)
108 PHA02764 hypothetical protein; 47.4 2.8E+02 0.006 27.0 22.2 93 33-132 11-106 (399)
109 KOG1289 Amino acid transporter 47.1 3.3E+02 0.0073 28.5 12.1 48 104-151 326-373 (550)
110 PLN00151 potassium transporter 45.6 4.7E+02 0.01 29.1 15.8 54 243-302 346-399 (852)
111 COG3125 CyoD Heme/copper-type 42.9 1.7E+02 0.0038 23.4 8.7 57 382-438 17-76 (111)
112 PRK11281 hypothetical protein; 41.6 4.4E+02 0.0096 30.6 13.2 31 275-305 540-570 (1113)
113 PF02447 GntP_permease: GntP f 38.2 4.6E+02 0.0099 26.9 12.1 84 387-470 234-321 (441)
114 PRK13183 psbN photosystem II r 35.6 39 0.00085 22.1 2.3 30 277-306 4-33 (46)
115 PRK12768 CysZ-like protein; Re 34.5 3.8E+02 0.0082 24.9 10.7 28 264-296 9-36 (240)
116 PLN02810 carbon-monoxide oxyge 34.3 3.7E+02 0.0081 24.7 10.7 68 275-346 76-143 (231)
117 PF02468 PsbN: Photosystem II 32.9 39 0.00085 21.9 1.9 27 280-306 4-30 (43)
118 CHL00020 psbN photosystem II p 30.6 37 0.00079 21.9 1.5 27 280-306 4-30 (43)
119 PF01235 Na_Ala_symp: Sodium:a 30.3 1.9E+02 0.0042 29.2 7.4 86 110-208 300-385 (416)
120 PF05805 L6_membrane: L6 membr 30.1 54 0.0012 29.2 3.1 31 405-435 43-73 (195)
121 TIGR00794 kup potassium uptake 29.3 7.8E+02 0.017 26.8 16.4 55 242-302 239-293 (688)
122 KOG4812 Golgi-associated prote 27.4 1.4E+02 0.0031 27.3 5.2 64 394-461 165-242 (262)
123 cd08763 Cyt_b561_CYB561 Verteb 27.0 3.4E+02 0.0073 22.9 7.2 68 275-346 37-104 (143)
124 PRK04949 putative sulfate tran 25.5 5.6E+02 0.012 23.9 14.5 37 264-305 18-54 (251)
125 COG3763 Uncharacterized protei 24.7 2.3E+02 0.0049 20.6 4.8 32 447-478 8-40 (71)
126 PRK09928 choline transport pro 24.5 4.8E+02 0.01 28.3 9.4 69 130-198 416-485 (679)
127 PF11286 DUF3087: Protein of u 24.3 2.7E+02 0.0059 24.0 6.2 43 273-315 11-53 (165)
128 cd08763 Cyt_b561_CYB561 Verteb 21.8 2E+02 0.0044 24.2 5.0 25 441-465 40-64 (143)
129 KOG1619 Cytochrome b [Energy p 21.3 6.6E+02 0.014 23.2 8.4 82 258-346 71-152 (245)
130 TIGR02230 ATPase_gene1 F0F1-AT 21.2 3.6E+02 0.0078 21.2 5.8 16 446-461 78-93 (100)
131 PF05313 Pox_P21: Poxvirus P21 20.8 4.4E+02 0.0096 23.1 6.7 53 382-434 57-110 (189)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-54 Score=427.53 Aligned_cols=407 Identities=39% Similarity=0.673 Sum_probs=359.1
Q ss_pred CCCCccccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHH
Q 011548 28 DDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMD 107 (483)
Q Consensus 28 ~~~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~ 107 (483)
++..++|++|++++.++.++.++|.|+|+|||+++++||..|+++++..++++.||..+|.+|.+..+++.++|.++|.|
T Consensus 30 ~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~d 109 (437)
T KOG1303|consen 30 DPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPD 109 (437)
T ss_pred CccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHH
Confidence 34455788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCC
Q 011548 108 VVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFH 187 (483)
Q Consensus 108 ~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~ 187 (483)
+++++||+++++++.+.+.+..++.++.|++..+|++..+.+..+.+.. ..+...|.++++++.+|++++++++
T Consensus 110 l~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~~ 183 (437)
T KOG1303|consen 110 LGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNFH 183 (437)
T ss_pred HHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCcc
Confidence 9999999999999999999999999999999999999999987664331 2335688999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhc
Q 011548 188 KLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTL 267 (483)
Q Consensus 188 ~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em 267 (483)
.++++|..+.++.+.+..+.+..++.+.............. .+.. ..+++++++.|+|++|..+|+|+++|
T Consensus 184 ~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~------~~~~---~~f~a~g~iaFaf~gH~v~peIq~tM 254 (437)
T KOG1303|consen 184 SLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL------GTIP---TVFTALGIIAFAYGGHAVLPEIQHTM 254 (437)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC------CCCc---chhhhhhheeeeecCCeeeeehHhhc
Confidence 99999999999999988888888877765432211111111 0000 01899999999999999999999999
Q ss_pred ccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCcccccccCcCCchHHHHHHHHHHHHHHHHhhhccccchH
Q 011548 268 KSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIF 347 (483)
Q Consensus 268 ~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~ 347 (483)
|+| ++|+|++..++.+++.+|+.+++.||++|||+++|+++.|++ +|.|....+++++.++++.++.++..|+.
T Consensus 255 k~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl~ 328 (437)
T KOG1303|consen 255 KSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPLF 328 (437)
T ss_pred CCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhhhcchH
Confidence 999 779999999999999999999999999999999999999996 58899999999999999999999999999
Q ss_pred HHHHHHhhhhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhhhhhhhhhhhhhHH
Q 011548 348 GFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVE 427 (483)
Q Consensus 348 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~v~~~~Gs~~~~~~~~ilP~l 427 (483)
+.+|+......++ +.+ +....|.+.|..+++.+.++|+.+|.|+++++++|+.....+++++|++
T Consensus 329 ~~~E~~~~~~~~~--~~~-------------~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~ 393 (437)
T KOG1303|consen 329 DVVEKLIGVKHPD--FKK-------------RSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCL 393 (437)
T ss_pred HHHHHHhccCCcc--ccc-------------cccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999998764332 111 1226899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 011548 428 MYIARTKIRRFSFTWVWLKIL-IWSCFIVSLVALVGSVQGLIQS 470 (483)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~g~~~~i~~l~~~ 470 (483)
+|++.+|.++.+.+|.+.+.. .++++++++....++++.++.+
T Consensus 394 ~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 394 MYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred HHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 999999988888899888888 7899999999999999988753
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=5.4e-54 Score=436.97 Aligned_cols=400 Identities=15% Similarity=0.200 Sum_probs=314.5
Q ss_pred cCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHhC
Q 011548 35 TGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLG 114 (483)
Q Consensus 35 ~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G 114 (483)
.++..++++|++|+++|+|+|+||++|+++||+.|++++++++.++.|+.+++.++.++.+ ..+|+|++++++|
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~------~~sY~~la~~~~G 132 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTN------IRTYEGVARVLLG 132 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------CCCHHHHHHHHhC
Confidence 4667899999999999999999999999999999999999999999999999999887633 3499999999999
Q ss_pred CcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchhHHHH
Q 011548 115 GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSI 194 (483)
Q Consensus 115 ~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~~~s~ 194 (483)
|++++++++.+.+.++|.|++|+++.+|.++.+++....+.. ......++..+.++.+++++|++++|++++++++|.
T Consensus 133 ~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~--~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~ 210 (467)
T PTZ00206 133 PWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDF--LKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVST 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccch--hhhccCcEEeeeehhhhHhhhcccccchHHHHHHHH
Confidence 999999999999999999999999999999988753211000 000011233445566778999999999999999999
Q ss_pred HHHHHHHHHHHHhhheeeeeecCCCCCccccccccccc----cCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhcccC
Q 011548 195 LAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGV----DVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSS 270 (483)
Q Consensus 195 ~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~~ 270 (483)
+++.++++.++.+++.++.+...+. .+..+.++ +........+.+.++++++|||.||.+++++++|||||
T Consensus 211 i~~~~i~~~vi~ivi~~~~~~~~~~-----~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~ 285 (467)
T PTZ00206 211 IAVSFMVYLVIVIVVHSCMNGLPEN-----IKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNR 285 (467)
T ss_pred HHHHHHHHHHhhhhhhhhcccCccc-----ccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhccc
Confidence 9998877666655544443322111 00111000 00001112367899999999999999999999999997
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCcccccccCcCCchHHHHHHHHHHHHHHHHhhhccccchHHHH
Q 011548 271 PPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFV 350 (483)
Q Consensus 271 ~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l 350 (483)
+. +|+.++...++.+++++|.++|++||+.||++++++++.|++. .++....++++++++.++.+||++.+|+|+.+
T Consensus 286 t~--~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p-~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i 362 (467)
T PTZ00206 286 SV--GKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDP-VNEPAIMVGFVGVLVKLFVSYALLGMACRNAL 362 (467)
T ss_pred ch--hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCC-CCCchhhHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 65 8999999999999999999999999999999999999999941 23455678889999999999999999999999
Q ss_pred HHHhhhhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhhhhhhhhhhhhhHHHHH
Q 011548 351 EKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYI 430 (483)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~v~~~~Gs~~~~~~~~ilP~l~~~ 430 (483)
++.... +..+ .+ . +++...+..+.+.++++|+++|+++.+++++||++++.++|++|+++|+
T Consensus 363 ~~~~~~--~~~~---------~~----~---~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l 424 (467)
T PTZ00206 363 YDVIGW--DARK---------VA----F---WKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFM 424 (467)
T ss_pred HHHhCC--Cccc---------Cc----h---hhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 887632 2110 01 0 3344455556667889999999999999999999999999999999999
Q ss_pred HHh---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011548 431 ART---KIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLI 468 (483)
Q Consensus 431 ~~~---~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~i~~l~ 468 (483)
+.. +++...++|...+.++++|++.+++||+.++++.+
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 425 YSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred hcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 842 21222234445677888999999999999999876
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-51 Score=399.92 Aligned_cols=388 Identities=19% Similarity=0.262 Sum_probs=330.6
Q ss_pred ccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHH--
Q 011548 34 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA-- 111 (483)
Q Consensus 34 ~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~-- 111 (483)
+..|..++..+++++++|+|+|++|++|+++||+.|.+..++++.++.|+++.+++|..+...+.+....+|.+.++.
T Consensus 45 ~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~ 124 (449)
T KOG1304|consen 45 HPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAM 124 (449)
T ss_pred CCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHH
Confidence 346888999999999999999999999999999999999999999999999999998865443333334678877765
Q ss_pred --------HhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcC
Q 011548 112 --------SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI 183 (483)
Q Consensus 112 --------~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~ 183 (483)
.+||++|.+++..+++.++|.|++|+++.+++++++.+. ...-.++.+.++.+.+...++++++
T Consensus 125 ~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~--------~~~~~~s~~~~i~~~~~~~lll~~I 196 (449)
T KOG1304|consen 125 EGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE--------HSPGVLSVRLYILIQLPPLLLLNLI 196 (449)
T ss_pred cCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc--------cCCCCccHHHHHHHHHHHHHHHHHH
Confidence 458889999999999999999999999999999999862 1111466778999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhh
Q 011548 184 PNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 263 (483)
Q Consensus 184 ~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i 263 (483)
|+++.+..+|.++.++.+...+++....+.... +.+ +.+...++.+....+|+.+|||.|+.++.|+
T Consensus 197 r~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~-------~~~------~~~~~~~~~~~~lf~GtaifafEGig~VLPl 263 (449)
T KOG1304|consen 197 RNLKILSPFSLFANVFILVGLAIIMYYLVQDLP-------PTS------DLPAVTGWSGLPLFFGTAIFAFEGIGMVLPL 263 (449)
T ss_pred HhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccC-------Ccc------ccccccchhhhHHHHHHHHHHhccceEEEeh
Confidence 999999999999999988766665443332221 111 1122233457889999999999999999999
Q ss_pred HhhcccCCcchhhhH---HHHHHHHHHHHHHHHHHHhHHHhhcCCCCCcccccccCcCCchHHHHHHHHHHHHHHHHhhh
Q 011548 264 QDTLKSSPPENKSMK---RATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQ 340 (483)
Q Consensus 264 ~~em~~~~~~~~~~~---~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~p 340 (483)
.++||+| ++++ +++..++.+++++|+.+|++||++|||++++.|+.|+| + +|+...+++++.+.+..+||
T Consensus 264 En~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP--~-~~l~~~Vkl~~ai~I~ls~p 336 (449)
T KOG1304|consen 264 ENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP--Q-EILSQTVKLLLAIAIFLTYP 336 (449)
T ss_pred hhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC--c-cHHHHHHHHHHHHHHHHcCc
Confidence 9999999 9999 99999999999999999999999999999999999998 4 89999999999999999999
Q ss_pred ccccchHHHHHHHhhhhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhhhhhhhh
Q 011548 341 VFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPL 420 (483)
Q Consensus 341 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~v~~~~Gs~~~~~~ 420 (483)
++++|..+++++.+.++..++ ++++..+..|..+++++.++|..+||++.+++++|+++++.+
T Consensus 337 LQ~yv~~eIi~~~i~~k~~~~-----------------~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L 399 (449)
T KOG1304|consen 337 LQFYVPIEIIEPGIRKKFSEN-----------------RKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLL 399 (449)
T ss_pred hhhhhhHHHHHHhHHHhcCcc-----------------hhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHH
Confidence 999999999999876644321 123788999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHhCCCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011548 421 TVYFPVEMYIARTKIRR---FSFTWVWLKILIWSCFIVSLVALVGSVQG 466 (483)
Q Consensus 421 ~~ilP~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~g~~~~i~~ 466 (483)
.+++|++++++.++.+. +.++++....+.++|++..++|+|.++.+
T Consensus 400 ~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~ 448 (449)
T KOG1304|consen 400 ALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKE 448 (449)
T ss_pred HHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999876443 34555666667788888889999988875
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=6.9e-48 Score=390.13 Aligned_cols=398 Identities=17% Similarity=0.181 Sum_probs=313.3
Q ss_pred cccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccC---CCCcCCC--C--cCcH
Q 011548 33 KRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRS---PDPVTGK--R--NYTY 105 (483)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~---~~~~~~~--~--~~~y 105 (483)
.++++..++.+++++..+|.|+|+||++|+++||+.|++.++++++++.|+.+++.+++.+ .+++.+. + ..+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 3467888999999999999999999999999999999999999999999999999986422 2222221 1 1368
Q ss_pred HHHHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCC
Q 011548 106 MDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPN 185 (483)
Q Consensus 106 ~~~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~ 185 (483)
.|+++..+||+++.+..+...+.+++.|+.|++..++.+..+.. ..+.+.|.+++.++.+|++++|+
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~-------------~~~~~~~~~i~~~v~~~~~~i~s 189 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND-------------NLDKRTWTYIFGACCATTVFIPS 189 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC-------------CcCCCeEEeehHHHHHHHHHccC
Confidence 99999999999999999999999999999999987776654421 35567888889999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHh
Q 011548 186 FHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQD 265 (483)
Q Consensus 186 l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~ 265 (483)
+++++++|.++..++++..+.+++.++..... + +.+ .+...+...++.++++++|||.+|..+|++++
T Consensus 190 l~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~-----~---~~~----~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~ 257 (473)
T PLN03074 190 FHNYRIWSFLGLLMTTYTAWYMTIAALSHGQV-----E---GVK----HSGPTKLVLYFTGATNILYTFGGHAVTVEIMH 257 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----C---CCC----CCCchhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 99999999999887665433333222222110 0 011 01123445678888899999999999999999
Q ss_pred hcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCc--ccccccCcCCchHHHHHHHHHHHHHHHHhhhccc
Q 011548 266 TLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPG--NFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFC 343 (483)
Q Consensus 266 em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~--~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~ 343 (483)
||||| ++++++...+...++.+|+.+|+.||+.|||++++ +.+.|.| ++. ...+++++++++++.+||+++
T Consensus 258 ~M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp--~~~-~~~~~~~~~~i~~~~sy~l~~ 330 (473)
T PLN03074 258 AMWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP--RSG-WRDAAVILMLIHQFITFGFAC 330 (473)
T ss_pred hccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC--Cch-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999 89999999999999999999999999999999764 5566676 233 467899999999999999999
Q ss_pred cchHHHHHHHhhhhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhhhhhhhhhhh
Q 011548 344 QPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVY 423 (483)
Q Consensus 344 ~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~v~~~~Gs~~~~~~~~i 423 (483)
+|+.+..|+.... ++. +....|...|+.+++.++++|+.+|+|+.+++++||++++.++++
T Consensus 331 ~p~~~~~e~~~~~--~~~-----------------k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i 391 (473)
T PLN03074 331 TPLYFVWEKAIGV--HDT-----------------KSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYI 391 (473)
T ss_pred hhHHHHHHHHhcc--ccc-----------------ccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 9999988876532 110 112678999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCC-------------cchHH--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccc----cCcccc
Q 011548 424 FPVEMYIARTKIR-------------RFSFT--WVWLKILIWSCFIVS-LVALVGSVQGLIQSLKTYK----PFQAVQ 481 (483)
Q Consensus 424 lP~l~~~~~~~~~-------------~~~~~--~~~~~~~~~~~~~~~-v~g~~~~i~~l~~~~~~~~----~f~~~~ 481 (483)
+|+++|++.++++ ...++ .+....+++++.+++ +.|+|+++++++++.++|+ +|+|..
T Consensus 392 ~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~~~~~c~~ 469 (473)
T PLN03074 392 IPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFAKCYQCPP 469 (473)
T ss_pred HHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhhhhccCCC
Confidence 9999999865432 11112 133444555445554 6999999999999999965 555543
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.8e-51 Score=416.96 Aligned_cols=403 Identities=27% Similarity=0.408 Sum_probs=322.0
Q ss_pred ccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHh
Q 011548 34 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASL 113 (483)
Q Consensus 34 ~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~ 113 (483)
+|+|+++++++++|+++|+|+|++|++|+++||+.|++++++++.++.||.+++.++.++.+ .+.+..+|+|++++++
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~--~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP--NGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc--cccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999988643 1223569999999999
Q ss_pred CCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchhHHH
Q 011548 114 GGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLS 193 (483)
Q Consensus 114 G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~~~s 193 (483)
||++++++++++.+.++|.+++|+++.+|.+..+.+....+ ...++..+.++.+++++|++++|+++++++.|
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-------~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s 151 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-------LFISRYVWIIIFALIVLPLSFLKNLKSLRYLS 151 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeeccccccccc-------ccccccccccccccccccccccchhhHHHHHh
Confidence 99999999999999999999999999999999998653221 24566778888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhcccCCcc
Q 011548 194 ILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPE 273 (483)
Q Consensus 194 ~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~~~~~ 273 (483)
.++.++++..+++.+....... ..++.+... + +.....+.++++.++++++|||.||+++|++.+|||+|++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~---~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~ 224 (409)
T PF01490_consen 152 ILGLFSIFYFIVIVVIYIISYG-PGEPSGVPS---P---PVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKF 224 (409)
T ss_pred hhhhhccceeeeeecceeeeee-ccccccccc---c---cccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccc
Confidence 9999887754222222222111 111111100 0 11224556789999999999999999999999999998310
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCcccccccCcCCchHHHHHHHHHHHHHHHHhhhccccchHHHHHHH
Q 011548 274 NKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKW 353 (483)
Q Consensus 274 ~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~ 353 (483)
+|++|+...++.+++++|+.+|+.||++||++++++++.|++ ++++...++++++.++++.+||++.+|.++.+++.
T Consensus 225 -~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~--~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~ 301 (409)
T PF01490_consen 225 -KKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP--NDDVLIIIARILLVISLLLSYPLQLFPARNSLENL 301 (409)
T ss_pred -cccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCC--CcccccccccccchhhhhhccccccchhHhhhhhh
Confidence 245599999999999999999999999999999999999998 44578899999999999999999999999999998
Q ss_pred hhhhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhhhhhhhhhhhhhHHHHHHHh
Q 011548 354 CNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIART 433 (483)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~v~~~~Gs~~~~~~~~ilP~l~~~~~~ 433 (483)
..+..+. .++...+ +...+++|...|+.+++.++++|..+|+++.+++++|++++..++|++|+++|+|.+
T Consensus 302 ~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~ 372 (409)
T PF01490_consen 302 LFKRAAS----SRDSPKN-----TPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLF 372 (409)
T ss_pred eeccccc----ccccccc-----ccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhh
Confidence 7542000 0000000 012236789999999999999999999999999999999999999999999999998
Q ss_pred CCCcchHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 011548 434 KIRRFSFTWVW-----LKILIWSCFIVSLVALVGSV 464 (483)
Q Consensus 434 ~~~~~~~~~~~-----~~~~~~~~~~~~v~g~~~~i 464 (483)
++++++.++.. .+...+++++..+.|++.++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 373 KRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred cccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 77664444432 23344555555565665543
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-44 Score=355.20 Aligned_cols=401 Identities=19% Similarity=0.286 Sum_probs=327.3
Q ss_pred cccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHH
Q 011548 33 KRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS 112 (483)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~ 112 (483)
+++.|.+++++++.|+++|+|++++|++|++.|.+.|+++++++++++.++.+++.++.++.+ ..+|+++++..
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~------~~ty~~l~~~~ 76 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSG------ERTYSSLGDLI 76 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcC------CCCHHHHHHHH
Confidence 456678899999999999999999999999999999999999999999999999999988754 23999999999
Q ss_pred hCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcc-hhHHHHHHHHHhhcCCCCCchhH
Q 011548 113 LGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNP-LMIIFACIQIVLSQIPNFHKLSW 191 (483)
Q Consensus 113 ~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~pl~~~~~l~~l~~ 191 (483)
+|+.++....+.......| +++|+++.+|.+..+........... .. +.+++. +.+..+.++.|+++.|+++++++
T Consensus 77 ~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~-~~-~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~ 153 (411)
T KOG1305|consen 77 FGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGG-SH-YLDRNFLILLVLLFIILPLSLLKNLDSLKY 153 (411)
T ss_pred cCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccc-cc-cccceeEeehHHHHHHHHHHHHHhhhhHHH
Confidence 9999988888777777777 89999999999997765422111111 01 233333 57888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhcccCC
Q 011548 192 LSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSP 271 (483)
Q Consensus 192 ~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~~~ 271 (483)
.|.++..++..++++++...+.... ..+.. .+ +.++...+++.+.++|+++|||.||+|..++++|||||+
T Consensus 154 tS~~s~~~~~~fv~~vv~~~~~~~~----~~~~~--~~---~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s 224 (411)
T KOG1305|consen 154 TSALSLASVVYFVVLVVYKYFQGPC----ALGRL--SY---LVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRS 224 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc----ccCCc--cc---ccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCch
Confidence 9999999998887777655443221 00110 00 112233336899999999999999999999999999997
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCcccccccCcCCch----HHHHHHHHHHHHHHHHhhhccccchH
Q 011548 272 PENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPF----WLVDFANACIAVHLIGAYQVFCQPIF 347 (483)
Q Consensus 272 ~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~----~~~~~~~~~~~i~~~~s~pl~~~p~~ 347 (483)
. +++.++...+...+.++|..+|.+||+.|||++.+|++.+++...+. +....++..+.++.+.++|+..+|+|
T Consensus 225 ~--~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr 302 (411)
T KOG1305|consen 225 V--KKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLR 302 (411)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHH
Confidence 5 89999999999999999999999999999999999999999854332 24678999999999999999999999
Q ss_pred HHHHHHhhhhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhhhhhhhhhhhhhHH
Q 011548 348 GFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVE 427 (483)
Q Consensus 348 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~v~~~~Gs~~~~~~~~ilP~l 427 (483)
..+++...+..++. + +....++++.+..++....+.|+++|+++.+++++|++++..++|++|++
T Consensus 303 ~~l~~~~~~~~~~~----~-----------~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~ 367 (411)
T KOG1305|consen 303 MNLDELLFPYQPGL----T-----------SFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPAL 367 (411)
T ss_pred HHHHHHhcccCCCC----C-----------CccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHH
Confidence 99887764432321 1 11116688899999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011548 428 MYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQS 470 (483)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~i~~l~~~ 470 (483)
+|++..++ .++++...+...++++.+.++|+...+.++..+
T Consensus 368 ~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 368 YYLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred hhheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99998876 333455667778888888888888888877654
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-41 Score=309.46 Aligned_cols=411 Identities=16% Similarity=0.202 Sum_probs=337.3
Q ss_pred CCccccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCC--CCcCcHHH
Q 011548 30 GRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTG--KRNYTYMD 107 (483)
Q Consensus 30 ~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~--~~~~~y~~ 107 (483)
++.+.|++-+++..|..|++-|.=|++||++....||. ++..++.++.++.||+.+|++|..+.+|... +.+.+|.+
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYva 189 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVA 189 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHH
Confidence 34567889999999999999999999999999999975 8999999999999999999999987766322 12359999
Q ss_pred HHHHHhCCcc-eeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCC
Q 011548 108 VVRASLGGRS-VQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNF 186 (483)
Q Consensus 108 ~~~~~~G~~~-~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l 186 (483)
+++..++|+. +..+.+.+.+.+..+|+.|.+..+|.++.-++. . ..+.+-|.++..+.++|.++++++
T Consensus 190 IA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~-----~------svd~~sWm~i~~a~LLpc~FLk~L 258 (524)
T KOG4303|consen 190 IADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPG-----L------SVDKASWMMITSASLLPCSFLKDL 258 (524)
T ss_pred HHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCC-----C------CccccchhhhhhHHHhhhHHHHHH
Confidence 9999888874 489999999999999999999999998875432 1 456778999999999999999888
Q ss_pred CchhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhh
Q 011548 187 HKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDT 266 (483)
Q Consensus 187 ~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~e 266 (483)
+-...+|++..++-+..-++++.+|+-...+ - .++ +.....+.-++...+++++|+|..|..+|.+-..
T Consensus 259 k~VS~lSf~ct~sH~viN~i~v~YCLs~~~d-W-------~ws---kv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGN 327 (524)
T KOG4303|consen 259 KIVSRLSFFCTISHLVINLIMVLYCLSFVSD-W-------SWS---KVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGN 327 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-c-------cce---eEEEEEEcccCceEEEEEEEeeeceeeccccccc
Confidence 8777777777776666666666666644322 0 111 1222334446778999999999999999999999
Q ss_pred cccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCcccccccCcCCchHHHHHHHHHHHHHHHHhhhccccch
Q 011548 267 LKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPI 346 (483)
Q Consensus 267 m~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 346 (483)
|++| .++.-.+.++=+...++-..+|..||++|++.+++.|++|+|. .-...+++++.++.-++|||+-.+..
T Consensus 328 M~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~---qsfk~~VN~fLV~KALLSYPLPfyAA 400 (524)
T KOG4303|consen 328 MKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN---QSFKILVNLFLVVKALLSYPLPFYAA 400 (524)
T ss_pred cCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc---cchhhhhhHHHHHHHHHcCCchHHHH
Confidence 9999 7888888999999999999999999999999999999999973 23467899999999999999999999
Q ss_pred HHHHHHHhhhhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhhhhhhhhhhhhhH
Q 011548 347 FGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPV 426 (483)
Q Consensus 347 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~v~~~~Gs~~~~~~~~ilP~ 426 (483)
.+.+|+-+.+..|.+.|..--+ | .-+.+.+.+.+|+++++..++.|+++|.|..+++++|+++++.++|++|+
T Consensus 401 velLe~nlF~g~p~t~Fpscys----~---Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~ 473 (524)
T KOG4303|consen 401 VELLENNLFLGYPQTPFPSCYS----P---DGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPA 473 (524)
T ss_pred HHHHHHhhhcCCCCCCCceeeC----C---CcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHH
Confidence 9999876655445554321100 0 01112445678999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Q 011548 427 EMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPF 477 (483)
Q Consensus 427 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~i~~l~~~~~~~~~f 477 (483)
++|++++++.....++.....+++.|..+++.|+|-+-..+++++++..+|
T Consensus 474 lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~~ 524 (524)
T KOG4303|consen 474 LFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSADSD 524 (524)
T ss_pred HHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccCCC
Confidence 999999887766666667777788899999999999999999999987765
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-32 Score=272.18 Aligned_cols=371 Identities=17% Similarity=0.152 Sum_probs=278.2
Q ss_pred ccccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHH
Q 011548 32 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (483)
Q Consensus 32 ~~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~ 111 (483)
.+++.+..++++++.++++|+|+|++|++++..|+..+++++++.+.+++++.+++.|+..+.+.. ..++.+++++
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~----~~~~~~~~~~ 80 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNG----KASITSLVED 80 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----cccHHHHHHH
Confidence 356677889999999999999999999999999999999999999999999999999998875421 1389999999
Q ss_pred HhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchhH
Q 011548 112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSW 191 (483)
Q Consensus 112 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~~ 191 (483)
.+||++++++++.+.+.+++.+.+|.+..+|.++++++..... . ..++....++++.++.++++.++...++.
T Consensus 81 ~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~-----~--~~~r~~~~lif~~~~~~l~~~~~~~~lk~ 153 (415)
T COG0814 81 YLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGL-----N--PLPRKLGSLIFALVLAFLSWLGTLAVLKI 153 (415)
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhccc-----C--CcchHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 9999999999999999999999999999999999998742210 0 15577788888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhcccCC
Q 011548 192 LSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSP 271 (483)
Q Consensus 192 ~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~~~ 271 (483)
.+.+....+.++++....+.... + .......+ ..+ +..+.....++|+++|||+||+++|++.+|||+++
T Consensus 154 ts~l~~~~v~~~~~l~~~~~~~~----~--~~~l~~~~---~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~ 223 (415)
T COG0814 154 TSLLVFGKVIYLVLLVVYLIPHW----N--PANLFALP---SAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNS 223 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc----C--HHHHhccc---ccc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccch
Confidence 99999888876666554332211 1 01111111 000 24445788999999999999999999999999886
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCcccccccCcCC-----------chHHHHHHHHHHHHHHHHhhh
Q 011548 272 PENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYE-----------PFWLVDFANACIAVHLIGAYQ 340 (483)
Q Consensus 272 ~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~-----------~~~~~~~~~~~~~i~~~~s~p 340 (483)
+ ++.+|+...+..+..++|..++.++|..+|+.+.++++++.++.+ .+......+++..+.+.+++-
T Consensus 224 ~--~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFl 301 (415)
T COG0814 224 K--KAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFL 301 (415)
T ss_pred h--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHh
Confidence 2 349999999999999999999999999999999999999986321 112334444555555555544
Q ss_pred ccccchHHHHHHHhhhhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhhhhhhhh
Q 011548 341 VFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPL 420 (483)
Q Consensus 341 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~v~~~~Gs~~~~~~ 420 (483)
-.....++.+++...+ .+++ .+++ ..............+..+...+...+....+.+.+|+..+..+
T Consensus 302 gv~lg~~~~~~~~~~~--~~~~-~~r~----------~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~l 368 (415)
T COG0814 302 GVYLGLFEGLADLFKK--SNSK-PGRK----------KTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPAL 368 (415)
T ss_pred CchhhHHHhhhHHHHh--ccCc-ccch----------hhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 4444455555555532 1110 0010 0001333445555666777777777888888888888888888
Q ss_pred hhhhhHHHHHHHhCCCcc
Q 011548 421 TVYFPVEMYIARTKIRRF 438 (483)
Q Consensus 421 ~~ilP~l~~~~~~~~~~~ 438 (483)
.++.|...+.|....+..
T Consensus 369 l~~~p~~~~~~~~~~~~~ 386 (415)
T COG0814 369 LFIKPRKLIYKLPALKVY 386 (415)
T ss_pred HHHHHHHhcCCCCceeec
Confidence 888888887776544433
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.97 E-value=4.1e-28 Score=238.33 Aligned_cols=393 Identities=11% Similarity=0.071 Sum_probs=273.1
Q ss_pred CccccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHH
Q 011548 31 RAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (483)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~ 110 (483)
.++++++.+.+.+.+.++.||+|+|+||.+.++.|+.++++++++++..+.||..++.|...+.++ ..++.+++|
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~-----g~~~~tma~ 80 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI-----GSSFDTITK 80 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHHH
Confidence 456778999999999999999999999999999999999999999999999999999998765432 348999999
Q ss_pred HHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchh
Q 011548 111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLS 190 (483)
Q Consensus 111 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~ 190 (483)
+.+||+|+.+..++..+..++.+++|+.-.++.+.+.++... ...++....++++++.-.+.+.. .+...
T Consensus 81 ~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~---------~~i~~~~~~llF~~~~~~iv~~g-t~~vd 150 (414)
T PRK10483 81 DLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMS---------LNVPARAAGFGFALLVAFVVWLS-TKAVS 150 (414)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcC---------CCCcHHHHHHHHHHHHHHHHHhh-hhHHH
Confidence 999999999999999999999999999999999999885310 02233344455555555554432 24444
Q ss_pred HHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhcccC
Q 011548 191 WLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSS 270 (483)
Q Consensus 191 ~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~~ 270 (483)
+++-+-...++...++.+.....+. + .....+.+ ..+...+...+.++|++++||+.|+++|++++.+++.
T Consensus 151 ~~n~~l~~~~i~~f~~~~~~l~~~i-~----~~~L~~~~----~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d 221 (414)
T PRK10483 151 RMTAIVLGAKVITFFLTFGSLLGHV-Q----PATLFNVA----ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKD 221 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-C----HHHHhccc----cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcC
Confidence 4443333332222222222211111 1 01111111 0111222347799999999999999999999999876
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhc-----------CCCCCcccccccCc-CCchHHHHHHHHHHHHHHHHh
Q 011548 271 PPENKSMKRATAVGVTTTTLFYIMCGVMGYLAF-----------GNDAPGNFLTGFGF-YEPFWLVDFANACIAVHLIGA 338 (483)
Q Consensus 271 ~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~f-----------g~~~~~~il~~~~~-~~~~~~~~~~~~~~~i~~~~s 338 (483)
. +|.+|++..+..+..++|++.-......- ++++ +..++.+.. .+..+...+..++..+.+.+|
T Consensus 222 ~---~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TS 297 (414)
T PRK10483 222 P---KTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DVLVQALSGVLNSRSLDLLLVVFSNFAVASS 297 (414)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 4 89999999999999999996333333322 2222 111122211 133456677888999999999
Q ss_pred hhccccchHHHHHHHhhhhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCc-hHHHHHHhhhhhh
Q 011548 339 YQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPF-FNDFVGLIGAASF 417 (483)
Q Consensus 339 ~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~-~~~v~~~~Gs~~~ 417 (483)
|--+...++|.+.+.++. ++++ ..|.....+..++++++|.+.|+ |-..+++.|.. .
T Consensus 298 FlGv~LGL~d~l~D~~k~--~~~~-------------------~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~ 355 (414)
T PRK10483 298 FLGVTLGLFDYLADLFGF--DDSA-------------------MGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-A 355 (414)
T ss_pred HHHHHHHHHHHHHHHhCC--CCcc-------------------ccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-H
Confidence 998888999999888743 2210 22444566788999999999998 99999999977 6
Q ss_pred hhhhhhhhHHHHHHHhCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011548 418 WPLTVYFPVEMYIARTKI-RRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKT 473 (483)
Q Consensus 418 ~~~~~ilP~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~g~~~~i~~l~~~~~~ 473 (483)
+++..++|+++.+|.||+ ++..++-...+..+.+.+++++......+....+-++.
T Consensus 356 ~il~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~l~~~~~~g~~~i~~~i~~~~~~lp~ 412 (414)
T PRK10483 356 TIWAAIVPALLARASRKRFGSPKFRVWGGKPMIVLILLFGVGNALVHILSSFNLLPV 412 (414)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCceecCCHHHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 788899999999998875 22223322333334555555555555555555544443
No 10
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.97 E-value=3.9e-28 Score=238.20 Aligned_cols=394 Identities=14% Similarity=0.101 Sum_probs=273.7
Q ss_pred ccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHh
Q 011548 34 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASL 113 (483)
Q Consensus 34 ~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~ 113 (483)
||.+.+.+++.+.+++||+|+|+||.+-++.|+.++++.+++++..+.||..++.|+..+.++ ..++.+++|+.+
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~-----g~~l~tma~~~L 81 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV-----GSSFNTITKDLI 81 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHHHHHc
Confidence 445778899999999999999999999999999999999999999999999999998776542 348999999999
Q ss_pred CCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchhHHH
Q 011548 114 GGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLS 193 (483)
Q Consensus 114 G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~~~s 193 (483)
||+|+.+..++..+..++.+++|+.-.++.+++.++... ....+++...++++++...+.+.. .+...+.+
T Consensus 82 G~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~--------~~~i~~~~~~llF~~~~~~~v~~g-t~~vd~~n 152 (415)
T PRK09664 82 GNTWNIISGITVAFVLYILTYAYISANGAIISETISMNL--------GYHANPRIVGICTAIFVASVLWIS-SLAASRIT 152 (415)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc--------cCCCcHHHHHHHHHHHHHHHHHhc-hhHHHHHH
Confidence 999999999999999999999999999999999985311 002223333455555555554432 23333443
Q ss_pred HHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhh-HhHHHHHHHHHHHhhcCccchHhhHhhcccCCc
Q 011548 194 ILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEK-VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPP 272 (483)
Q Consensus 194 ~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~faf~~~~~i~~i~~em~~~~~ 272 (483)
-+-...++...++.+.....+... ..+.+.+. ...... ....+.++|++++||+.|+++|++++.+++.+
T Consensus 153 r~l~~~~ii~f~~~~~~l~~~i~~-----~~L~~~~~---~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~- 223 (415)
T PRK09664 153 SLFLGLKIISFVIVFGSFFFQVDY-----SILRDATS---TTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRK- 223 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccH-----HHHhcCcc---ccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccH-
Confidence 333222222222222221211110 11111110 000011 12467899999999999999999999998664
Q ss_pred chhhhHHHHHHHHHHHHHHHH--HHHhHHH---------hhcCCCCCcccccccCcCCchHHHHHHHHHHHHHHHHhhhc
Q 011548 273 ENKSMKRATAVGVTTTTLFYI--MCGVMGY---------LAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQV 341 (483)
Q Consensus 273 ~~~~~~~~~~~a~~~~~~~Y~--~~g~~gy---------~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl 341 (483)
++.+|++..+..+..++|. ..++.|- ...|+++.+.+.......+..+...+..++..+.+.+||--
T Consensus 224 --~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlG 301 (415)
T PRK09664 224 --DKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFG 301 (415)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999996 3333332 23333433322222222245577778999999999999998
Q ss_pred cccchHHHHHHHhhhhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCc-hHHHHHHhhhhhhhhh
Q 011548 342 FCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPF-FNDFVGLIGAASFWPL 420 (483)
Q Consensus 342 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~-~~~v~~~~Gs~~~~~~ 420 (483)
+...++|.+.+.++. ++++ ..|.....+..+++++++++.|+ |-..+++.|.. .+++
T Consensus 302 v~LGL~D~l~D~~~~--~~~~-------------------~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il 359 (415)
T PRK09664 302 VTLGLFDYLADLFKI--DNSH-------------------GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIW 359 (415)
T ss_pred HHHHHHHHHHHHhCC--CCcc-------------------ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHH
Confidence 888999999888743 2211 22444566788999999999998 99999999996 5799
Q ss_pred hhhhhHHHHHHHhCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 011548 421 TVYFPVEMYIARTKI-RRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTY 474 (483)
Q Consensus 421 ~~ilP~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~g~~~~i~~l~~~~~~~ 474 (483)
..++|+++.+|.||+ .+..++-...+..+.+.++++++-....+....+-++.|
T Consensus 360 ~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ii~~~~~~~~~~lp~~ 414 (415)
T PRK09664 360 AVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVILCWFGNVFNVLPKF 414 (415)
T ss_pred HHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence 999999999998875 333333333445556666666666555555555554443
No 11
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.96 E-value=2.9e-26 Score=227.80 Aligned_cols=353 Identities=16% Similarity=0.199 Sum_probs=254.1
Q ss_pred ccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHh
Q 011548 34 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASL 113 (483)
Q Consensus 34 ~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~ 113 (483)
|+.+.+.+++.+.++++|+|+|+||+..+..|..++++.+++++.++++++.++.|...+.++ ..++.+++++.+
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-----~~~~~~~a~~~l 75 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-----GSSLTSMAEKYL 75 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHHh
Confidence 456788999999999999999999999999999999999999999999999999998876543 349999999999
Q ss_pred CCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchhHHH
Q 011548 114 GGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLS 193 (483)
Q Consensus 114 G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~~~s 193 (483)
||+++++..+.+.+..++.+++|....++.++++++.... ...+++...+++.++...+.... -+.....+
T Consensus 76 G~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~--------~~~~~~~~~~~f~~i~~~iv~~g-~~~v~~~n 146 (394)
T PF03222_consen 76 GKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG--------TDLSPWLSSLLFTIIFGGIVYFG-TKAVDRIN 146 (394)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence 9999999999999999999999999999999999865221 12333333344433333333221 12333333
Q ss_pred HHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhcccCCcc
Q 011548 194 ILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPE 273 (483)
Q Consensus 194 ~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~~~~~ 273 (483)
-+-+...+...+..+...+.+... +.... ..+...++...+.++|+.++||+.|+.+|++++.+++.+
T Consensus 147 ~~lv~~~i~~~~~l~~~~~p~~~~--------~~L~~--~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~-- 214 (394)
T PF03222_consen 147 RVLVFGMIISFIILVVYLIPHWNP--------SNLLD--APPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDP-- 214 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCH--------HHhhc--cccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccH--
Confidence 333222222222222222222111 11110 001123444677999999999999999999999999665
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH--HhHHHh---------hcCCCCCc--ccccccCcCCchHHHHHHHHHHHHHHHHhhh
Q 011548 274 NKSMKRATAVGVTTTTLFYIMC--GVMGYL---------AFGNDAPG--NFLTGFGFYEPFWLVDFANACIAVHLIGAYQ 340 (483)
Q Consensus 274 ~~~~~~~~~~a~~~~~~~Y~~~--g~~gy~---------~fg~~~~~--~il~~~~~~~~~~~~~~~~~~~~i~~~~s~p 340 (483)
||.+|++..+..+..++|++. .++|-+ ..+++..+ ..+.+.. ++.+...+..++..+.+.+||-
T Consensus 215 -~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~i~~~~~~fa~~Ai~TSFl 291 (394)
T PF03222_consen 215 -KKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVS--GSPWISILGSIFAFFAIATSFL 291 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999854 333311 12212111 1122211 3456677889999999999999
Q ss_pred ccccchHHHHHHHhhhhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCc-hHHHHHHhhhhhhhh
Q 011548 341 VFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPF-FNDFVGLIGAASFWP 419 (483)
Q Consensus 341 l~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~-~~~v~~~~Gs~~~~~ 419 (483)
-....++|.+.+.++. ++++ ..|.....+..++++++|...|+ |..++++.| ...++
T Consensus 292 Gv~lgl~d~l~d~~k~--~~~~-------------------~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~i 349 (394)
T PF03222_consen 292 GVYLGLFDFLADLFKL--KNNS-------------------SGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAI 349 (394)
T ss_pred HHHHHHHHHHHHHHcC--Cccc-------------------cchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHH
Confidence 8888999999888743 2210 23555667778889999999998 999999999 88899
Q ss_pred hhhhhhHHHHHHHhCCCc
Q 011548 420 LTVYFPVEMYIARTKIRR 437 (483)
Q Consensus 420 ~~~ilP~l~~~~~~~~~~ 437 (483)
+..++|+++.+|.|++++
T Consensus 350 l~~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 350 LLGILPALMVWKARKRKP 367 (394)
T ss_pred HHHHHHHHHHHHHHcccC
Confidence 999999999999876554
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.95 E-value=4.1e-26 Score=225.47 Aligned_cols=385 Identities=12% Similarity=0.141 Sum_probs=264.7
Q ss_pred cHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHhCCc
Q 011548 37 TWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGR 116 (483)
Q Consensus 37 s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~ 116 (483)
+.+.+.+.+.++++|+|+|+||.+.+..|..++++++++++.+..|+.+++.|+..+.++ ..++.+++++.+||+
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~-----~~~~~~~a~~~LG~~ 78 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA-----DTGLGTLAKRYLGRY 78 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-----CCCHHHHHHHHhChH
Confidence 678899999999999999999999999999999999999999999999999997654332 348999999999999
Q ss_pred ceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchhHHHHHH
Q 011548 117 SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILA 196 (483)
Q Consensus 117 ~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~~~s~~~ 196 (483)
|+++..+++.+..+..+.+|....++.+.+.++.+.. + ..+.....+++.++.....+. +.+...+++-+-
T Consensus 79 g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~----~----~i~~~~~~l~F~~~~~~iv~~-g~~~v~~~n~~L 149 (403)
T PRK15132 79 GQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTG----I----SMSPTAGVLLFTLVAGGVVCV-GTSSVDLFNRFL 149 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhcc----C----CCChHHHHHHHHHHHHHHHhc-cHHHHHHHHHHH
Confidence 9999999999999999999999999999888764211 0 112223334443333333332 223333333332
Q ss_pred HHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhcccCCcchhh
Q 011548 197 AVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKS 276 (483)
Q Consensus 197 ~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~~~~~~~~ 276 (483)
+...+...+..+...+.+.. ..+....++ ..+ -.+.++|++++||+.|+++|++++.+++.+ +|
T Consensus 150 ~~~~ii~~~~~~~~l~p~~~-----~~~L~~~~~------~~~--~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~---~~ 213 (403)
T PRK15132 150 FSAKIIFLVVMLALMMPHIH-----KVNLLTLPL------QQG--LALSAIPVIFTSFGFHGSVPSIVSYMGGNI---RK 213 (403)
T ss_pred HHHHHHHHHHHHHHHHHhcC-----HHHHhcCCc------ccc--HHHHHHHHHHHHhhCCcccHHHHHHhCcCH---HH
Confidence 22222211122211121111 011111010 001 277899999999999999999999998765 89
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHhhcCCCC-----Cc-----ccccccCc-CCchHHHHHHHHHHHHHHHHhhhccccc
Q 011548 277 MKRATAVGVTTTTLFYIMCGVMGYLAFGNDA-----PG-----NFLTGFGF-YEPFWLVDFANACIAVHLIGAYQVFCQP 345 (483)
Q Consensus 277 ~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~-----~~-----~il~~~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p 345 (483)
.+|++..+..+..++|+..-......-+.+. ++ ++++.+.. .+..+...+..++..+.+.+||--....
T Consensus 214 ~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lg 293 (403)
T PRK15132 214 LRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALG 293 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999965555554444221 11 22222221 1345777888999999999999988889
Q ss_pred hHHHHHHHhhhhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCc-hHHHHHHhhhhhhhhhhhhh
Q 011548 346 IFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPF-FNDFVGLIGAASFWPLTVYF 424 (483)
Q Consensus 346 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~-~~~v~~~~Gs~~~~~~~~il 424 (483)
++|.+.+.+++ +++ + ..|.....+..++++++|...|+ |..++++.|.. .+++.+++
T Consensus 294 l~d~l~d~~~~--~~~----~---------------~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~~-~ail~~il 351 (403)
T PRK15132 294 LFDYLADLFQR--RNT----V---------------GGRLQTGLITFLPPLAFALFYPRGFVMALGYAGVA-LAVLALLL 351 (403)
T ss_pred HHHHHHHHHcc--Ccc----c---------------cCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHH
Confidence 99999888743 111 0 22455677889999999999998 99999999975 68999999
Q ss_pred hHHHHHHHhCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011548 425 PVEMYIARTKIR-RFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKT 473 (483)
Q Consensus 425 P~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~g~~~~i~~l~~~~~~ 473 (483)
|+++.+|.++++ ..++|-...+....+.+++|++.....+....+-++.
T Consensus 352 P~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~~~~~~~~~lp~ 401 (403)
T PRK15132 352 PSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGIQFLIAAGLLPE 401 (403)
T ss_pred HHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 999999988654 2223322233344555556655555555554444433
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.94 E-value=1.9e-25 Score=223.88 Aligned_cols=345 Identities=12% Similarity=0.099 Sum_probs=252.4
Q ss_pred HHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHhCCcceeeh
Q 011548 42 SAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLC 121 (483)
Q Consensus 42 ~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~~i~ 121 (483)
+..++++++|+|++++|..+++.|...+.+.+++.++++.++..++.|...+.+ + ..++.+++++.+||++++++
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p-~----~~~~~~~~~~~~G~~~g~~~ 77 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYP-G----GASFNTIAKDLLGKTGNIIA 77 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C----CCCHHHHHHHHhCHHHHHHH
Confidence 455679999999999999999999999999999999999999999999876543 2 23899999999999999999
Q ss_pred hhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchhHHHHHHHHHHH
Q 011548 122 GLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSF 201 (483)
Q Consensus 122 ~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~~~s~~~~~~~~ 201 (483)
.+..++.++..+.+|.+..++++..+++.... . ..+.....++..+++.++. .++.+....++.+.+...+
T Consensus 78 ~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~----~----~~~~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l 148 (381)
T TIGR00837 78 GLSLLFVLYILTYAYISGGGSILSRLIGEYFG----F----PWSARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKI 148 (381)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC----C----CccHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999988753111 0 1222233333333444433 4456777788877777666
Q ss_pred HHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhcccCCcchhhhHHHH
Q 011548 202 AYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRAT 281 (483)
Q Consensus 202 ~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~~~~~~~~~~~~~ 281 (483)
...+++++.++.+... .+..+.. .......+...++++..++|++|.+++++.+|+++++ ||.+|++
T Consensus 149 ~~l~~~ii~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~---k~i~rai 215 (381)
T TIGR00837 149 IAFALVFSGLLPHVKG-----DLLLDVA-----LDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNV---KKVKKSI 215 (381)
T ss_pred HHHHHHHHHHHhhccH-----HHHhcCc-----cccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCH---HHHHHHH
Confidence 5544444333332211 1111000 0011234677899999999999999999999998663 9999999
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcCCCCCcccc----------cccCc-CCchHHHHHHHHHHHHHHHHhhhccccchHHHH
Q 011548 282 AVGVTTTTLFYIMCGVMGYLAFGNDAPGNFL----------TGFGF-YEPFWLVDFANACIAVHLIGAYQVFCQPIFGFV 350 (483)
Q Consensus 282 ~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il----------~~~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l 350 (483)
..+..+++++|+++........+.+.-.+.. +.... .+..+...+..++..+.+++++.-...+.+|.+
T Consensus 216 i~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l 295 (381)
T TIGR00837 216 LIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYL 295 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877766666543211111 11110 123456678889999999999999999999988
Q ss_pred HHHhhhhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCchH-HHHHHhhhhhhhhhhhhhhHHHH
Q 011548 351 EKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFN-DFVGLIGAASFWPLTVYFPVEMY 429 (483)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~-~v~~~~Gs~~~~~~~~ilP~l~~ 429 (483)
.+.+.+. +. + ..|.....+..+++.++|.+.|+.. ..++..| +..+++.+++|++++
T Consensus 296 ~~~~~~~--~~----~---------------~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~ 353 (381)
T TIGR00837 296 ADLFKFD--DS----K---------------KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLA 353 (381)
T ss_pred HHHhCCC--cc----c---------------CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 7777431 10 0 1134456777789999999999844 9999999 778999999999999
Q ss_pred HHHhCC
Q 011548 430 IARTKI 435 (483)
Q Consensus 430 ~~~~~~ 435 (483)
+|.||+
T Consensus 354 ~~~r~~ 359 (381)
T TIGR00837 354 WKARKK 359 (381)
T ss_pred HHHHhc
Confidence 997765
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.91 E-value=9.9e-22 Score=193.07 Aligned_cols=391 Identities=10% Similarity=0.047 Sum_probs=258.5
Q ss_pred HHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHhCCccee
Q 011548 40 TASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQ 119 (483)
Q Consensus 40 ~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~~ 119 (483)
.-.+.+.++.+|+|+|+||-.....|..++++++++++.+++++++.+.|...+.+++ ..++.+++++.+||+++.
T Consensus 23 ~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~----~~~i~~v~~~~lG~~g~~ 98 (443)
T PRK13629 23 TWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNP----SGNITETVEEHFGKTGGV 98 (443)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC----CCCHHHHHHHHcChhHHH
Confidence 3458899999999999999999999999999999999999999999999987654332 348999999999999999
Q ss_pred ehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q 011548 120 LCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVM 199 (483)
Q Consensus 120 i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~~~s~~~~~~ 199 (483)
+..+.+++..+..+.+|.....+.+.+++.+.. + .. ..++....+++.+++....... -+...+++-+-+.-
T Consensus 99 i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql-~----~~--~~~r~l~slifv~~l~~iv~~G-~~~v~kv~~~Lv~~ 170 (443)
T PRK13629 99 VITFLYFFAICPLLWIYGVTITNTFMTFWENQL-G----FA--PLNRGFVALFLLLLMAFVIWFG-KDLMVKVMSYLVWP 170 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C----cC--CccHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHH
Confidence 999999999999999999988888887654321 0 00 1234444444444444443322 12222333222222
Q ss_pred HHHHHHHhhheeeeeecCCCCCcccccccccc--ccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhcccC-------
Q 011548 200 SFAYSSIGIGLSIAKVIGDGPHATTLTGTTVG--VDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSS------- 270 (483)
Q Consensus 200 ~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~~------- 270 (483)
.+...+....+.+.+... ......+.+ ++...+......+.++|++++||+.|+++|++...+|+.
T Consensus 171 ~i~~l~~l~~~LiP~w~~-----~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~ 245 (443)
T PRK13629 171 FIASLVLISLSLIPYWNS-----AVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGR 245 (443)
T ss_pred HHHHHHHHHHHHHHHcCH-----HHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcccccc
Confidence 221111111111211110 011100100 000000111246789999999999999999999995332
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCC-----Cccc--ccc----cCcC-Cc-----hHHHHHHHHHHHH
Q 011548 271 PPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA-----PGNF--LTG----FGFY-EP-----FWLVDFANACIAV 333 (483)
Q Consensus 271 ~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~-----~~~i--l~~----~~~~-~~-----~~~~~~~~~~~~i 333 (483)
+..++|.+|++..+..+..++|+..-+.+...-+++. ++|+ +.. ++.. +. .+...+..++..+
T Consensus 246 ~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~ 325 (443)
T PRK13629 246 DFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALV 325 (443)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHH
Confidence 2114899999999999999999988777777666432 1122 222 2110 11 3456677788888
Q ss_pred HHHHhhhccccchHHHHHHHhhh-h-CCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Q 011548 334 HLIGAYQVFCQPIFGFVEKWCNK-R-WPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGL 411 (483)
Q Consensus 334 ~~~~s~pl~~~p~~~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~v~~~ 411 (483)
.+.+||--.....+|.+..+..+ . .++++ + ...+..+......+.+.++.++..-|++-.+++-
T Consensus 326 AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~ 391 (443)
T PRK13629 326 AIFKSFFGHYLGTLEGLNGLILKFGYKGDKT---K-----------VSLGKLNTISMIFIMGSTWVVAYANPNILDLIEA 391 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---c-----------cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 99999998888999999888742 1 11111 0 1112556667778888999999999999999998
Q ss_pred hhhhhhhhhhhhhhHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011548 412 IGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQG 466 (483)
Q Consensus 412 ~Gs~~~~~~~~ilP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~i~~ 466 (483)
.|+...+.+.|++|.....|...-++.+.+. . .++.+++|++...+.+++
T Consensus 392 ~~gPiia~il~l~P~y~i~kvp~l~~yr~~~-~----n~fv~~~Gl~~i~~~~~~ 441 (443)
T PRK13629 392 MGAPIIASLLCLLPMYAIRKAPSLAKYRGRL-D----NVFVTVIGLLTILNIVYK 441 (443)
T ss_pred hhhHHHHHHHHHHHHHHHHccHHHHHhCCCc-h----hHHHHHHHHHHHHHHHHh
Confidence 8888889999999999988865433221111 1 244556666666555555
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.86 E-value=1.6e-19 Score=179.28 Aligned_cols=360 Identities=11% Similarity=0.042 Sum_probs=249.1
Q ss_pred HHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHhCCcce
Q 011548 39 VTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSV 118 (483)
Q Consensus 39 ~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~ 118 (483)
+.-.+.+.++++|+|+|++|...++.||...++..++...+++++..++.|.....+ .. ..++.|++++.|||+++
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~-~p---~~~i~~~~~~~fGk~~G 81 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSK-NP---CEDITEVVEEHFGKNWG 81 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC---CCCHHHHHHHHcCHHHH
Confidence 456788999999999999999999999999999999999999999999999754322 11 23899999999999999
Q ss_pred eehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 011548 119 QLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAV 198 (483)
Q Consensus 119 ~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~~~s~~~~~ 198 (483)
.+..+.+++..+..+.+|....++.+.+++...... ..+.+....+..++.+-.....+.+.+..++.+-+.
T Consensus 82 ~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~--------~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~ 153 (397)
T TIGR00814 82 ILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGT--------APPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVF 153 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 999999999999999999999999998887542110 011111222222222222223355666666655554
Q ss_pred HHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhH----hhcccCCcch
Q 011548 199 MSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQ----DTLKSSPPEN 274 (483)
Q Consensus 199 ~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~----~em~~~~~~~ 274 (483)
..+...+++....+.+... .+....|. ......+...++++.++||.+|+++|+.. +|.+||+..+
T Consensus 154 ~~ii~l~~l~~~lip~~~~-----~~L~~~p~-----~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~ 223 (397)
T TIGR00814 154 PLVLILVLLSLYLIPHWNG-----ANLTTFPS-----FNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAE 223 (397)
T ss_pred HHHHHHHHHHHHHHHHcCH-----HHHhcCCc-----ccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHH
Confidence 4333333333232322100 11111110 01123468899999999999999999998 4455343234
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCC-----cc--cccccC-cCCchHHHHHHHHHHHHHHHHhhhccccch
Q 011548 275 KSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAP-----GN--FLTGFG-FYEPFWLVDFANACIAVHLIGAYQVFCQPI 346 (483)
Q Consensus 275 ~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~-----~~--il~~~~-~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 346 (483)
+|.+|++..+..+..++|+..-..+....+++.- ++ .+..+. ..+..+...+..++..+.+.+|+--+....
T Consensus 224 ~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~ 303 (397)
T TIGR00814 224 RKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGA 303 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 8999999999999999999888877777765421 11 122111 113345666777888889999999898999
Q ss_pred HHHHHHHhhhh-CCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhhhhhhhhhhhhh
Q 011548 347 FGFVEKWCNKR-WPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFP 425 (483)
Q Consensus 347 ~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~v~~~~Gs~~~~~~~~ilP 425 (483)
+|.+.+.+.+. .++++ + ..++.........+.+.++.++..-|++-.+++-.|+...+.+.|++|
T Consensus 304 ~e~l~~l~~~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p 369 (397)
T TIGR00814 304 REGLNGIVLNSLKMKGK---K-----------INIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMP 369 (397)
T ss_pred HHHHHHHHHHHhccccc---c-----------cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHH
Confidence 99999887321 11111 0 111245556667778889999999999999999888888899999999
Q ss_pred HHHHHHHhC
Q 011548 426 VEMYIARTK 434 (483)
Q Consensus 426 ~l~~~~~~~ 434 (483)
...-.|...
T Consensus 370 ~~~~~~v~~ 378 (397)
T TIGR00814 370 MYAIYKVPA 378 (397)
T ss_pred HHHHHccHH
Confidence 999888543
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.79 E-value=9.8e-17 Score=163.88 Aligned_cols=362 Identities=11% Similarity=0.027 Sum_probs=205.1
Q ss_pred ccccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHH
Q 011548 32 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (483)
Q Consensus 32 ~~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~ 111 (483)
++|+.+.++.+...+++++|+|++.+|..+++.|- .+++.+++.+++.......+.|...+ .|+.| .....+++
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~-~P~~G----G~y~y~~~ 77 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMF-SRKSG----GMGGYAEY 77 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhh-CCCCC----chHHHHHH
Confidence 46789999999999999999999999988888775 57889999999999999999997654 44444 33445678
Q ss_pred HhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHh--hcCCCCCch
Q 011548 112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVL--SQIPNFHKL 189 (483)
Q Consensus 112 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl--~~~~~l~~l 189 (483)
.+||+.+++..|..++.......++.....+++..+.+. ..+.....++..+++..+ .-.+..+..
T Consensus 78 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~------------~~~~~~~~~~~~~~l~~~~~ln~~g~~~~ 145 (438)
T PRK10655 78 AFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGA------------TLSPVQICLATIGVLWLCTVANFGGARIT 145 (438)
T ss_pred HcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------ccchHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 999999999999887766655555554455555544321 000111111111111221 123345555
Q ss_pred hHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhccc
Q 011548 190 SWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKS 269 (483)
Q Consensus 190 ~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~ 269 (483)
..++.+.....+...+++++.++... +.+...+ .. +......+.++..++....|+|.|.+.+..+.+|+||
T Consensus 146 ~~i~~i~~~~~l~~l~~~~i~~~~~~-~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~ 217 (438)
T PRK10655 146 GQISSVTVWGVIIPVVGLSIIGWFWF-SPSLYVA---AW----NPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVEN 217 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CcccccC---Cc----CccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhC
Confidence 55555554444433333332222221 1111100 00 0011112345677888999999999999999999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCC----CcccccccCcCCchHHHHHHHHHHHHHHHHhhhccccc
Q 011548 270 SPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA----PGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQP 345 (483)
Q Consensus 270 ~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~----~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p 345 (483)
|+ |+++|++..+..++.++|++.........+++. +++..+-+...-.++...+..++..++.+.+..-....
T Consensus 218 P~---r~iPrAi~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~ 294 (438)
T PRK10655 218 PE---RNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFT 294 (438)
T ss_pred cc---ccccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97 899999999999999999987655444333211 11111000000122333444555555555555443333
Q ss_pred hHHHHHHHhh-hhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcC----chHHHHHHhhhhhhhhh
Q 011548 346 IFGFVEKWCN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFP----FFNDFVGLIGAASFWPL 420 (483)
Q Consensus 346 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p----~~~~v~~~~Gs~~~~~~ 420 (483)
..+.+...-+ +..| ++..+.|+.+.| .........+... +.+....| .++.++++.+... .+
T Consensus 295 ~sR~~~~~a~dg~lP--~~~~~v~~~~tP--------~~all~~~~i~~~-l~l~~~~~~~~~~~~~l~~~~~~~~--~i 361 (438)
T PRK10655 295 IAQVFKSSADEGYFP--KIFSRVTKVDAP--------VQGMLIIVVIQSL-LSLMTISPSLNSQFNVLVNLAVVTN--II 361 (438)
T ss_pred HHHHHHHHhcCCchh--HHHHhhCcCCCC--------HHHHHHHHHHHHH-HHHHHhCccHHHHHHHHHHHHHHHH--HH
Confidence 3444433321 1122 112222233344 2333333222211 11212223 3566666544443 67
Q ss_pred hhhhhHHHHHHHhCC
Q 011548 421 TVYFPVEMYIARTKI 435 (483)
Q Consensus 421 ~~ilP~l~~~~~~~~ 435 (483)
.|.++.+.+++++++
T Consensus 362 ~y~~~~~~~~~lr~~ 376 (438)
T PRK10655 362 PYILSMAALVIIQKV 376 (438)
T ss_pred HHHHHHHHHHHHHhh
Confidence 888888888876654
No 17
>PRK15049 L-asparagine permease; Provisional
Probab=99.79 E-value=1.4e-16 Score=164.63 Aligned_cols=371 Identities=14% Similarity=0.099 Sum_probs=211.5
Q ss_pred CccccCcHHHHHHHHHHhhhhHhhhHHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHH
Q 011548 31 RAKRTGTWVTASAHIITAVIGSGVLSLAW-AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (483)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~GiL~LP~-~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~ 109 (483)
+.+|+.+.++..+..++++||+|++..|. +++..|- .+++.+++.+++.......+.|.... .|+.| +....+
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~-~P~aG----g~y~y~ 98 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLH-RPSSG----SFVSYA 98 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC----CHHHHH
Confidence 46788899999999999999999999886 5666775 57888999999999999999997754 44433 566677
Q ss_pred HHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCch
Q 011548 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (483)
Q Consensus 110 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l 189 (483)
++.+||+.++++.|..++.............+.+...+. . + . ..+...+.++..++...+ -.+..+..
T Consensus 99 ~~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~-~--~----~----~~~~~~~~~~~~~l~~~i-N~~gvk~~ 166 (499)
T PRK15049 99 REFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWG-A--F----G----GVPQWVFALAALTIVGTM-NMIGVKWF 166 (499)
T ss_pred HHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c--C----C----CCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 889999999999998887654444433333333332211 0 0 0 011111112222222222 12334555
Q ss_pred hHHHHHHHHHHHHHHHHhhheeeeeecCCCCCcccccccc--ccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhc
Q 011548 190 SWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT--VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTL 267 (483)
Q Consensus 190 ~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em 267 (483)
..++....+..+..++.+++.++.....+.+.......+. .+.....+..+.+.+.++...+|+|.|.+.+....+|+
T Consensus 167 ~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~ 246 (499)
T PRK15049 167 AEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC 246 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 5555444433322222222222211111111100000000 00000001223455667788999999999999999999
Q ss_pred ccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCC----cccccccCcCCchHHHHHHHHHHHHHHHHhhhccc
Q 011548 268 KSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAP----GNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFC 343 (483)
Q Consensus 268 ~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~----~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~ 343 (483)
|||+ |+++|++..+...+.++|+..........+.+.. ++...-+......+...+.++..++..+.+..-.+
T Consensus 247 knP~---r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~ 323 (499)
T PRK15049 247 KDPQ---TMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGL 323 (499)
T ss_pred cChh---hHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9996 8899999999999999998766655444432211 11111111012234455666677777777766555
Q ss_pred cchHHHHHHHhh-hhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCc--hHHHHHHhhhhhhhhh
Q 011548 344 QPIFGFVEKWCN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPF--FNDFVGLIGAASFWPL 420 (483)
Q Consensus 344 ~p~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~--~~~v~~~~Gs~~~~~~ 420 (483)
+...+.+..+-. +..| ++..+.++.+.| ...+....++.++..++....|. ++.++++.+... .+
T Consensus 324 ~~~sR~l~a~Ardg~lP--~~f~kv~k~~~P--------~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~--li 391 (499)
T PRK15049 324 YCTGRILRSMAMGGSAP--SFMAKMSRQHVP--------YAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGI--IA 391 (499)
T ss_pred HHHHHHHHHHHhcCCcC--HHHHHhCCCCCC--------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HH
Confidence 555666655542 2223 222232333445 44444444443333333333342 666777655444 78
Q ss_pred hhhhhHHHHHHHhC
Q 011548 421 TVYFPVEMYIARTK 434 (483)
Q Consensus 421 ~~ilP~l~~~~~~~ 434 (483)
.|++|.+.+++.+|
T Consensus 392 ~y~~~~~~~l~~R~ 405 (499)
T PRK15049 392 SWAFIIVCQMRLRK 405 (499)
T ss_pred HHHHHHHHHHHHHH
Confidence 89999988888764
No 18
>PRK10249 phenylalanine transporter; Provisional
Probab=99.78 E-value=2.7e-16 Score=161.17 Aligned_cols=368 Identities=15% Similarity=0.065 Sum_probs=211.8
Q ss_pred CccccCcHHHHHHHHHHhhhhHhhhHHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHH
Q 011548 31 RAKRTGTWVTASAHIITAVIGSGVLSLAWA-IAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (483)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~GiL~LP~~-f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~ 109 (483)
+.+|+.+.++..+..+++++|+|++.+|-. .+..|- ..++.+++.+++.......+.|...+ .|+.| +..+.+
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~-~P~~G----g~~~y~ 91 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVE-EPVSG----SFAHFA 91 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC----CHHHHH
Confidence 456888999999999999999999998864 556675 58889999999999999999997765 34433 566678
Q ss_pred HHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCch
Q 011548 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (483)
Q Consensus 110 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l 189 (483)
++.+|++.++++.|..++.......+.....+.+++.+.+. .+...+.++..++...+ -.++.+..
T Consensus 92 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~l-N~~gv~~~ 157 (458)
T PRK10249 92 YKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD-------------VPTWIWAAAFFIIINAV-NLVNVRLY 157 (458)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-------------CcHHHHHHHHHHHHHHH-HHhcchhh
Confidence 89999999999999988776666666665555555543211 11111122222222222 22345555
Q ss_pred hHHHHHHHHHHHHHHHHhhheeeeeecCCC-CCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhcc
Q 011548 190 SWLSILAAVMSFAYSSIGIGLSIAKVIGDG-PHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLK 268 (483)
Q Consensus 190 ~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~ 268 (483)
+.++.......+..++++++.++.....+. .............+ .....+.++..++....|+|.|.+.+....+|+|
T Consensus 158 ~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~ 236 (458)
T PRK10249 158 GETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGG-FFATGWNGLILSLAVIMFSFGGLELIGITAAEAR 236 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCC-CCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence 544443333322222222221111111110 00001111000000 0012334678899999999999999999999999
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCC----cccccccCcCCchHHHHHHHHHHHHHHHHhhhcccc
Q 011548 269 SSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAP----GNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQ 344 (483)
Q Consensus 269 ~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~----~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~ 344 (483)
||+ |+++|++..+.....++|.+.........+++.. ++...-+.....++...+..++.++..+.+..-..+
T Consensus 237 ~P~---k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 313 (458)
T PRK10249 237 DPE---KSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVY 313 (458)
T ss_pred CHh---hHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 996 8999999999999999998755544434332211 111111100112344555556666666666554444
Q ss_pred chHHHHHHHhh-hhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcC--chHHHHHHhhhhhhhhhh
Q 011548 345 PIFGFVEKWCN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFP--FFNDFVGLIGAASFWPLT 421 (483)
Q Consensus 345 p~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p--~~~~v~~~~Gs~~~~~~~ 421 (483)
...+.+..+-. +..| +...+.++.+.| .........+.....++....| .++.+.++.+.. ..+.
T Consensus 314 ~~sR~l~a~ardg~lP--~~~~kv~~~~~P--------~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~--~~i~ 381 (458)
T PRK10249 314 SNSRMLFGLSVQGNAP--KFLTRVSRRGVP--------INSLMLSGAITSLVVLINYLLPQKAFGLLMALVVAT--LLLN 381 (458)
T ss_pred HHHHHHHHHhcCCCcC--HHHHHhCCCCCC--------HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH--HHHH
Confidence 44555544432 2223 112222222344 4444444444444444433333 256666654444 4789
Q ss_pred hhhhHHHHHHHhC
Q 011548 422 VYFPVEMYIARTK 434 (483)
Q Consensus 422 ~ilP~l~~~~~~~ 434 (483)
|++|.+.+++.+|
T Consensus 382 y~~~~~~~l~~r~ 394 (458)
T PRK10249 382 WIMICLAHLRFRA 394 (458)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988663
No 19
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.77 E-value=6.4e-16 Score=158.10 Aligned_cols=245 Identities=11% Similarity=0.015 Sum_probs=157.0
Q ss_pred CccccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHH
Q 011548 31 RAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (483)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~ 110 (483)
+++|+.+.++.+...+++++|+|++.+|....+.|. ..+..+++.++........+.|.... -|+.|. ....++
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~-~P~aGG----~y~~~~ 78 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSL-DPSPGG----SYAYAR 78 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCC----hhHHHH
Confidence 456789999999999999999999999988877774 35677777788888888888887665 344442 233378
Q ss_pred HHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhh--cCCCCCc
Q 011548 111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLS--QIPNFHK 188 (483)
Q Consensus 111 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~--~~~~l~~ 188 (483)
+.+||+..+++.+..++.......+......++...+.+.. . ......++..++++.+. -.+..+.
T Consensus 79 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~------~~~~~~~~~~~~~~~~~~ln~~gvk~ 146 (445)
T PRK10644 79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL------K------DPLVLTITCVVVLWIFVLLNIVGPKM 146 (445)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------C------CcHHHHHHHHHHHHHHHHHHHhchHH
Confidence 89999999999988887665555555545555554443210 0 01111122222222222 2345566
Q ss_pred hhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhcc
Q 011548 189 LSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLK 268 (483)
Q Consensus 189 l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~ 268 (483)
...++.+.....+..+++++...+... +++...+.+ + ......+.++..++....|+|.|.+......+|+|
T Consensus 147 ~~~i~~i~~~~~~i~l~~~~~~~~~~~-~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k 218 (445)
T PRK10644 147 ITRVQAVATVLALIPIVGIAVFGWFWF-RGETYMAAW---N----VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVK 218 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhccCCc---c----ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 666666555544433332222222111 111101100 0 01112234566788899999999999999999999
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcC
Q 011548 269 SSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFG 304 (483)
Q Consensus 269 ~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg 304 (483)
||+ |+.+|++..+..++.++|++..+.....-+
T Consensus 219 ~P~---r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~ 251 (445)
T PRK10644 219 NPK---RNVPIATIGGVLIAAVCYVLSSTAIMGMIP 251 (445)
T ss_pred Ccc---cchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 996 899999999999999999988777544443
No 20
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.76 E-value=1e-15 Score=155.98 Aligned_cols=363 Identities=11% Similarity=0.066 Sum_probs=206.1
Q ss_pred CccccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHH
Q 011548 31 RAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (483)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~ 110 (483)
+++|+.+.++.+...+++++|+|++.+|...++.|- ..+..+++.++........+.|...+ .|+.| ...+.++
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~-~~i~~wli~~~~~l~~al~~aEL~s~-~P~~G----G~y~y~~ 75 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGS-IAIWGWIISIIGAMSLAYVYARLATK-NPQQG----GPIAYAG 75 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCC----ChhHHHH
Confidence 356889999999999999999999999999888875 36788888888888888888887665 44443 3333446
Q ss_pred HHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHH--HHhhcCCCCCc
Q 011548 111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQ--IVLSQIPNFHK 188 (483)
Q Consensus 111 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~pl~~~~~l~~ 188 (483)
+ +||+.++++.+..+........++.+...+++..+.+.. .+ .. ... +...+++ .-+.-.+..+.
T Consensus 76 ~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~-----~~----~~--~~~-~~~~~i~~~~~~ln~~gvk~ 142 (435)
T PRK10435 76 E-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL-----ND----PI--PAG-IACIAIVWVFTFVNMLGGTW 142 (435)
T ss_pred H-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-----CC----hH--HHH-HHHHHHHHHHHHHHHHhHHH
Confidence 6 799999999998776655555566566666665554310 00 00 011 1111111 11222344555
Q ss_pred hhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhcc
Q 011548 189 LSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLK 268 (483)
Q Consensus 189 l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~ 268 (483)
...++.+..+..+..++..+..++.+. +......+++ ...+....++..++....|+|.|.+.+....+|+|
T Consensus 143 ~~~i~~i~~~~~li~~~~~~i~g~~~~-~~~~~~~~~~-------~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~k 214 (435)
T PRK10435 143 VSRLTTIGLVLVLIPVVGTAIVGWHWF-DAATYAANWN-------TSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVK 214 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHhhccccc-------CCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Confidence 555555444443332222222221111 1000000110 01123356788899999999999999999999999
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCC----CcccccccCcCCchHHHHHHHHHHHHHHHHhhhcccc
Q 011548 269 SSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA----PGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQ 344 (483)
Q Consensus 269 ~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~----~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~ 344 (483)
||+ |+++|++..+..++.++|++..+........+. .++..........++...+.+++..+..+.+......
T Consensus 215 nP~---r~iPrAi~~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~ 291 (435)
T PRK10435 215 NPK---RTVPLATMLGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMM 291 (435)
T ss_pred Ccc---ccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 996 899999999999999999987776655443221 1111111111123455556666566666665543333
Q ss_pred chHHHHHHHhh-hhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHH-HHHHHHHHHc-------CchHHHHHHhhhh
Q 011548 345 PIFGFVEKWCN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYV-IVSAVLAMIF-------PFFNDFVGLIGAA 415 (483)
Q Consensus 345 p~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~-------p~~~~v~~~~Gs~ 415 (483)
...+.....-+ +..|+ +..+.++.+.| ........++. +...++.... ..++.+.++.+..
T Consensus 292 ~~~r~~~~~ardG~lP~--~f~k~nk~g~P--------~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 361 (435)
T PRK10435 292 LVGQAGVRAANDGNFPK--VYGEVDKNGIP--------KKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLL 361 (435)
T ss_pred HHHHHHHHHHhCCCccH--HHHhhCcCCCC--------HHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHH
Confidence 33333333221 12231 22222333444 33333332222 1121221111 1255666664444
Q ss_pred hhhhhhhhhhHHHHHHHhCC
Q 011548 416 SFWPLTVYFPVEMYIARTKI 435 (483)
Q Consensus 416 ~~~~~~~ilP~l~~~~~~~~ 435 (483)
. .+.|++.++.++|.+++
T Consensus 362 ~--l~~y~~~~~~~ir~~~~ 379 (435)
T PRK10435 362 T--MLPYFYSCVDLIRFEGV 379 (435)
T ss_pred H--HHHHHHHHHHHHHhcCC
Confidence 4 67788888888876553
No 21
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.76 E-value=1.5e-15 Score=156.18 Aligned_cols=366 Identities=11% Similarity=0.088 Sum_probs=216.7
Q ss_pred ccCcHHHHHHHHHHhhhhHhhhHHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHH
Q 011548 34 RTGTWVTASAHIITAVIGSGVLSLAWA-IAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS 112 (483)
Q Consensus 34 ~~~s~~~~~~~li~~~iG~GiL~LP~~-f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~ 112 (483)
|+.+.++.+...+++++|+|++.+|.. .+..|....++.+++.++........+.|...+ .|+.+. ...+.+++.
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~-~P~~gG---G~y~y~~~~ 76 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANK-KPELDG---GVYSYAKAG 76 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCC---ChhhhHHhH
Confidence 567899999999999999999999986 445664445667888999888888888897765 343211 233347889
Q ss_pred hCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHH--HHHhhcCCCCCchh
Q 011548 113 LGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACI--QIVLSQIPNFHKLS 190 (483)
Q Consensus 113 ~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~pl~~~~~l~~l~ 190 (483)
+||+.+++..|..++.......++......++..+.+.. .. ..+....++..++ .+-..-.+..+..+
T Consensus 77 fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~-----~~-----~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~ 146 (468)
T TIGR03810 77 FGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIF-----GG-----GNNPPSIIGASVLLWCVHFLVLRGVEGAA 146 (468)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----cC-----CCcHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 999999999999888766666666666555555443211 00 0011111111111 12222235666667
Q ss_pred HHHHHHHHHHHHHHHHhhheeeeeecCCCCCcccc-ccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhccc
Q 011548 191 WLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTL-TGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKS 269 (483)
Q Consensus 191 ~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~ 269 (483)
.++.+.....+...+++++.++... +.+....+. ...+. .........++..++....|+|.|.+......+|.||
T Consensus 147 ~i~~i~~~~ki~~l~~~ii~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~ 223 (468)
T TIGR03810 147 FINTITTIAKLVPLFVFIVIGIFAF-KGDTFTNDFWGNANG--GFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK 223 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cHhhcCccccccccc--cCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC
Confidence 7666665554443333333222211 111111110 00000 0011122335567888999999999999999999998
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCC----Ccc----cccccCcCCchHHHHHHHHHHHHHHHHhhhc
Q 011548 270 SPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA----PGN----FLTGFGFYEPFWLVDFANACIAVHLIGAYQV 341 (483)
Q Consensus 270 ~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~----~~~----il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl 341 (483)
+ |+++|++..+...+.++|.++.+..+...+++. +++ +.++. ..++...+..++.+++.+.+..-
T Consensus 224 ~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~---~g~~~~~~i~~~~~is~~~~~~~ 296 (468)
T TIGR03810 224 R----SDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHM---VGTWGAVLINIGLIISILGAWLS 296 (468)
T ss_pred c----ccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHH---cchHHHHHHHHHHHHHHHHHHHH
Confidence 5 899999999999999999988877665544221 111 11111 23455667777778888877776
Q ss_pred cccchHHHHHHHhh-hhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHc-CchHHHHHHhhhhhhhh
Q 011548 342 FCQPIFGFVEKWCN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIF-PFFNDFVGLIGAASFWP 419 (483)
Q Consensus 342 ~~~p~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-p~~~~v~~~~Gs~~~~~ 419 (483)
......+.+..+-+ +..| +...+.|+.+.| .........+.....++.... +.++.+.++.+.. ..
T Consensus 297 ~~~~~sR~~~a~ardg~lP--~~f~k~~~~~tP--------~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~--~l 364 (468)
T TIGR03810 297 WTLLPAEIPLLMAKDKLMP--KYFGKENANGAP--------TNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSA--IL 364 (468)
T ss_pred HHHHHHHHHHHHHhCCCcc--HHHHhhCCCCCC--------HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH--HH
Confidence 66655555554432 2223 122222333444 333333333332222222221 3467777765544 46
Q ss_pred hhhhhhHHHHHHHhCC
Q 011548 420 LTVYFPVEMYIARTKI 435 (483)
Q Consensus 420 ~~~ilP~l~~~~~~~~ 435 (483)
+.|+++++.+++.+++
T Consensus 365 i~y~~~~~~~~~l~~~ 380 (468)
T TIGR03810 365 VPYLWSAAYQVKLSWR 380 (468)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8899999988887643
No 22
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.75 E-value=9e-16 Score=157.17 Aligned_cols=370 Identities=11% Similarity=0.060 Sum_probs=212.1
Q ss_pred CCCccccCcHHHHHHHHHHhhhhHhhhHHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHH
Q 011548 29 DGRAKRTGTWVTASAHIITAVIGSGVLSLAWA-IAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMD 107 (483)
Q Consensus 29 ~~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~-f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~ 107 (483)
+++.+|+.+.++..+..+++++|+|++..|.. .++.|- ..++.+++.+++.......+.|...+ .|..| ++.+
T Consensus 7 ~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~-~P~aG----g~y~ 80 (456)
T PRK10238 7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVE-EPVAG----SFSH 80 (456)
T ss_pred chhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC----CHHH
Confidence 34567889999999999999999999999865 556664 67788899999999988889887665 34433 5666
Q ss_pred HHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCC
Q 011548 108 VVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFH 187 (483)
Q Consensus 108 ~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~ 187 (483)
.+++.+||...+++.|..++.....+.+.....+++++.+.+. .+...+.++...+...+. ....+
T Consensus 81 ~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~~~~~~~~i~~~~~~~lN-~~gv~ 146 (456)
T PRK10238 81 FAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-------------IPTWVSAAVFFVVINAIN-LTNVK 146 (456)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------CcHHHHHHHHHHHHHHHH-HHhHH
Confidence 6788999999999999999888888888877777777654321 111112222222111111 22345
Q ss_pred chhHHHHHHHHHHHHHHHHhhheeeeeecCC-CCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhh
Q 011548 188 KLSWLSILAAVMSFAYSSIGIGLSIAKVIGD-GPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDT 266 (483)
Q Consensus 188 ~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~e 266 (483)
....++.+.....+...+++++.++.....+ +..............+. +..+.++..+++...|+|.|.+.+....+|
T Consensus 147 ~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~af~G~e~~~~~aeE 225 (456)
T PRK10238 147 VFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFL-PHGFTGLVMMMAIIMFSFGGLELVGITAAE 225 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCc-cccHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 5555555444443332222222111111111 00000111100000010 122345667788899999999999999999
Q ss_pred cccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCC-C---CcccccccCcCCchHHHHHHHHHHHHHHHHhhhcc
Q 011548 267 LKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND-A---PGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVF 342 (483)
Q Consensus 267 m~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~-~---~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 342 (483)
+|||+ |+++|++..+.....++|+..-......-+.+ . .++...-+......+...+.++...+..+.+..-.
T Consensus 226 ~knP~---r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~ 302 (456)
T PRK10238 226 ADNPE---QSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSC 302 (456)
T ss_pred hcChh---hHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99996 89999999888888888875433221111111 1 11111111111123444555666666666665555
Q ss_pred ccchHHHHHHHhh-hhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCc--hHHHHHHhhhhhhhh
Q 011548 343 CQPIFGFVEKWCN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPF--FNDFVGLIGAASFWP 419 (483)
Q Consensus 343 ~~p~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~--~~~v~~~~Gs~~~~~ 419 (483)
.+...+.+..+-. +..| ++..+.++.+.| .....+...+..+..++....|+ ++.++++.+.. ..
T Consensus 303 ~~~~sR~l~a~ardg~lP--~~f~kv~~~~~P--------~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~--~~ 370 (456)
T PRK10238 303 VYCNSRMLFGLAQQGNAP--KALASVDKRGVP--------VNTILVSALVTALCVLINYLAPESAFGLLMALVVSA--LV 370 (456)
T ss_pred HHHHHHHHHHHHhCCCcc--HHHHhhCcCCCc--------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--HH
Confidence 5555555554432 2223 122222233344 34444444433333333223332 66677764433 46
Q ss_pred hhhhhhHHHHHHHhC
Q 011548 420 LTVYFPVEMYIARTK 434 (483)
Q Consensus 420 ~~~ilP~l~~~~~~~ 434 (483)
+.|++|.+.+++.+|
T Consensus 371 i~y~~~~~~~l~~r~ 385 (456)
T PRK10238 371 INWAMISLAHMKFRR 385 (456)
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999998665
No 23
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.75 E-value=1.7e-15 Score=156.01 Aligned_cols=301 Identities=14% Similarity=0.048 Sum_probs=175.7
Q ss_pred CCccccCcHHHHHHHHHHhhhhHhhhHHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHH
Q 011548 30 GRAKRTGTWVTASAHIITAVIGSGVLSLAWA-IAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDV 108 (483)
Q Consensus 30 ~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~-f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~ 108 (483)
++.+|+.+.++.....+++++|+|++..|.. .+..|-...++.+++.+++.......+.|.... .|+.| .+...
T Consensus 10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~-~P~aG----G~y~y 84 (471)
T PRK11387 10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVA-MPETG----AFHVY 84 (471)
T ss_pred hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCC----CHHHH
Confidence 3467889999999999999999999988864 667775456778889999999999999997765 34433 45567
Q ss_pred HHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCc
Q 011548 109 VRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHK 188 (483)
Q Consensus 109 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~ 188 (483)
+++.+||..++++.|..++.....+.+.....+.++..+.+ ..+...+.++..++.. +.-.+..+.
T Consensus 85 ~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p-------------~~~~~~~~~~~~~~~~-~in~~gvk~ 150 (471)
T PRK11387 85 AARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFP-------------QVPVWPWCLLFCALIF-GLNVVSTRF 150 (471)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------cCcHHHHHHHHHHHHH-HHHHHhHHH
Confidence 78899999999999988877655554444444433332211 0011112222222222 222234444
Q ss_pred hhHHHHHHHHHHHHHHHHhhheeeeee----cC-CCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhh
Q 011548 189 LSWLSILAAVMSFAYSSIGIGLSIAKV----IG-DGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 263 (483)
Q Consensus 189 l~~~s~~~~~~~~~~~~i~i~~~i~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i 263 (483)
....+.......+..++.+++.++... .. +.......+.... .++. +....++..++....|+|.|.+.+...
T Consensus 151 ~~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~g~~~~~~~~~~~~faf~G~e~~~~~ 228 (471)
T PRK11387 151 FAEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTA-EGWF-PHGGLPILMTMVAVNFAFSGTELIGIA 228 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCC-CCCC-cccHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 444443333322222222222111110 00 0000000011100 0000 112346778888899999999999999
Q ss_pred HhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCC----cccccccCcCCchHHHHHHHHHHHHHHHHhh
Q 011548 264 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAP----GNFLTGFGFYEPFWLVDFANACIAVHLIGAY 339 (483)
Q Consensus 264 ~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~----~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~ 339 (483)
.+|+|||+ |+++|++..+...+.++|++..+......+.+.. ++...-+.....++...+..++.+++.+.+.
T Consensus 229 a~E~knP~---r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~ 305 (471)
T PRK11387 229 AGETENPA---KVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAA 305 (471)
T ss_pred HHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 99999996 8999999999999999999877655444442211 1111111111233455566666666666665
Q ss_pred hccccchHHHHHHHh
Q 011548 340 QVFCQPIFGFVEKWC 354 (483)
Q Consensus 340 pl~~~p~~~~l~~~~ 354 (483)
--.+....+.+..+-
T Consensus 306 ~~~~~~~sR~l~a~a 320 (471)
T PRK11387 306 NSGLYASGRMLWSLS 320 (471)
T ss_pred HHHHHHhhHHHHHHH
Confidence 555555555555443
No 24
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.74 E-value=8.8e-17 Score=158.39 Aligned_cols=372 Identities=12% Similarity=0.106 Sum_probs=238.9
Q ss_pred CCCCccccCcHHHHHHHHHHhhhhHhhhHHHHHHH-hhC-hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcH
Q 011548 28 DDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIA-QLG-WVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTY 105 (483)
Q Consensus 28 ~~~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~f~-~~G-~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y 105 (483)
++.+.+||.+.+.++..++++++|+|++..|.+.. ++| ...++++++++++++...+...+|.... -|+.|. +|
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~-ipksGg---d~ 81 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTS-IPKSGG---DY 81 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCCc---ch
Confidence 34455788999999999999999999999998755 443 6678889999999999999999997654 344443 34
Q ss_pred HHHHHHHhCCcceeehhhhHHHHhhhhH-HHHHHHhhhh-HHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcC
Q 011548 106 MDVVRASLGGRSVQLCGLAQYGNLIGVT-IGYTITASIS-MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI 183 (483)
Q Consensus 106 ~~~~~~~~G~~~~~i~~~~~~~~~~g~~-~~y~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~ 183 (483)
..+ .++||+...++..|.-.+...... ..+.+.++++ ++.+.+ .|..++...-.+.++++..+.+.
T Consensus 82 ayi-~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-----------~c~~p~~~~~lla~~~l~~lt~~ 149 (479)
T KOG1287|consen 82 AYI-SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-----------LCDVPRVASKLLAAALLVLLTLI 149 (479)
T ss_pred hhH-HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-----------CCCCchHHHHHHHHHHHHHHHHH
Confidence 433 458999998887776655554444 7777777777 554442 24454545555555555555554
Q ss_pred C--CCCchhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchH
Q 011548 184 P--NFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLV 261 (483)
Q Consensus 184 ~--~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~ 261 (483)
. +++.-.+++.+..++.+..+.++++.+++....+.........+ + ..+.+..+...++-...|||.|+..+.
T Consensus 150 n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f----~-g~~~~~g~i~lafysglfa~~GWd~lN 224 (479)
T KOG1287|consen 150 NSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEF----E-GSDTDVGNIALAFYSGLFAFSGWDYLN 224 (479)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEeccccccccccc----c-cCcCchHHHHHHHHHhhhcccCchhhc
Confidence 3 45555666777777777777777777777554433211110001 0 112333457788889999999999999
Q ss_pred hhHhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCC--C-cccccccCcC-CchHHHHHHHHHHHHHHHH
Q 011548 262 EIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA--P-GNFLTGFGFY-EPFWLVDFANACIAVHLIG 337 (483)
Q Consensus 262 ~i~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~--~-~~il~~~~~~-~~~~~~~~~~~~~~i~~~~ 337 (483)
.+.+|+|||. |++||++..++.+++++|+++-+..+.+-..+. . +-+-..|... -+.+. -.+-++..++.+.
T Consensus 225 ~vteEiknP~---ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G 300 (479)
T KOG1287|consen 225 YVTEEIKNPR---RTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIG 300 (479)
T ss_pred cchHhhcCcc---ccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhh
Confidence 9999999997 999999999999999999998877666543221 1 1111112110 12222 4455556666666
Q ss_pred hhhccccchHHHHHHHh-hhhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhhhh
Q 011548 338 AYQVFCQPIFGFVEKWC-NKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAAS 416 (483)
Q Consensus 338 s~pl~~~p~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~v~~~~Gs~~ 416 (483)
+.--.++...+.+.... +.+.|+. +...+.....| . ..++......++..+..|+..++|+.+-..
T Consensus 301 ~~n~~ifs~SR~~~~~areG~LP~~-~s~i~~~~~TP--------~----~allf~~~~~i~~~~~~d~~~LIny~sf~~ 367 (479)
T KOG1287|consen 301 SLNSVIFSSSRLFYAGAREGHLPAF-FSMISVRRFTP--------R----PALLFSGLLSIVLSLIGDFDQLINYVSFAY 367 (479)
T ss_pred hhhhHHHHHHHHHHHHHHccCccHH-HHhhcCCCCCC--------h----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66655555433333222 2222321 11111111123 1 223333344445555568999999988888
Q ss_pred hhhhhhhhhHHHHHHHhCCCc
Q 011548 417 FWPLTVYFPVEMYIARTKIRR 437 (483)
Q Consensus 417 ~~~~~~ilP~l~~~~~~~~~~ 437 (483)
.....+.+=+++++|.++++.
T Consensus 368 ~l~~~l~~~gll~lR~k~p~~ 388 (479)
T KOG1287|consen 368 WLFRGLSMAGLLWLRWKHPPL 388 (479)
T ss_pred HHHHHHHHHHHHHHHhhCCCC
Confidence 777888888999999877654
No 25
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.74 E-value=2.6e-15 Score=154.72 Aligned_cols=369 Identities=11% Similarity=0.074 Sum_probs=211.7
Q ss_pred cccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChh-HHHHHHHHHHHHHHHHHHHHHhcccCCCCc-CCCCcCcHHHHHH
Q 011548 33 KRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWV-AGPAVLMAFSFITYYTSTLLSDCYRSPDPV-TGKRNYTYMDVVR 110 (483)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~-~gii~li~~~~~~~~t~~~l~~~~~~~~~~-~~~~~~~y~~~~~ 110 (483)
+|+.+.++++...+++++|+|++.+|....+.|-. ..++.+++.++........+.|...+. |+ .| ...+.++
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~-P~~sG----G~y~y~~ 80 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKK-PELDG----GIYAYAR 80 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCC----ChhhhHH
Confidence 67899999999999999999999999987655533 346778888888888888888877654 33 33 2333558
Q ss_pred HHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhH-HHHHHHHHhhcCCCCCch
Q 011548 111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMI-IFACIQIVLSQIPNFHKL 189 (483)
Q Consensus 111 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~pl~~~~~l~~l 189 (483)
+.+||+.+++..|..++.......++.....+++..+.+... ... +...+.. +..+++.-..-.++.+..
T Consensus 81 ~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~-----~~~----~~~~~~~~~~~~~~~~~ln~~Gi~~~ 151 (473)
T TIGR00905 81 EGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG-----SGN----PVPSILGASVLLWVFTFLVLRGVRQA 151 (473)
T ss_pred hHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----CCC----cHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 899999999999998877666666666666666666554210 000 0011111 111112222234566666
Q ss_pred hHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhccc
Q 011548 190 SWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKS 269 (483)
Q Consensus 190 ~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~ 269 (483)
..++.+.....+...+++++..+... +......+..+.. .......+..+..++....|+|.|.+......+|+||
T Consensus 152 ~~i~~~~~~~~l~~l~~~ii~~~~~~-~~~~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~ 227 (473)
T TIGR00905 152 AFINTITTIAKLIPLFLFIIIGWFWF-KLDLFTADFWGHD---VPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN 227 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CchhcccccCccC---CCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 66676666554443333333332221 1111111110000 0001123346778889999999999999999999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCC----CCccccccc-CcCCchHHHHHHHHHHHHHHHHhhhcccc
Q 011548 270 SPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND----APGNFLTGF-GFYEPFWLVDFANACIAVHLIGAYQVFCQ 344 (483)
Q Consensus 270 ~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~----~~~~il~~~-~~~~~~~~~~~~~~~~~i~~~~s~pl~~~ 344 (483)
+ |+.+|++..+..++.++|++.........+.+ .+++..... ......+...+..++..++.+.+.-..+.
T Consensus 228 -~---r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~ 303 (473)
T TIGR00905 228 -K---SDVGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTM 303 (473)
T ss_pred -c---ccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 99999999999999999998776654443322 111101110 00012344445555566666666555554
Q ss_pred chHHHHHHHhh-hhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHH-cCchHHHHHHhhhhhhhhhhh
Q 011548 345 PIFGFVEKWCN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMI-FPFFNDFVGLIGAASFWPLTV 422 (483)
Q Consensus 345 p~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~p~~~~v~~~~Gs~~~~~~~~ 422 (483)
...+.+..+-+ +..| ++..+.|+.+.| ........++.....++... ...++.+.++.+... .+.|
T Consensus 304 ~~sR~~~amardg~lP--~~~~~v~~~~tP--------~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~--~i~y 371 (473)
T TIGR00905 304 LAAEVPFSAAKDGLFP--KIFGRVNKNGAP--------SVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMI--LVPY 371 (473)
T ss_pred HHHHHHHHHHhCCChh--HHHHhhCccCCC--------HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH--HHHH
Confidence 55555544432 1222 112222222344 33333332222211111111 234677777654443 6888
Q ss_pred hhhHHHHHHHhCC
Q 011548 423 YFPVEMYIARTKI 435 (483)
Q Consensus 423 ilP~l~~~~~~~~ 435 (483)
.++.+.+++.+++
T Consensus 372 ~~~~~a~~~lr~~ 384 (473)
T TIGR00905 372 LLSAAYLLKLAKV 384 (473)
T ss_pred HHHHHHHHHHHHc
Confidence 8888888776654
No 26
>PRK11021 putative transporter; Provisional
Probab=99.74 E-value=6.2e-15 Score=149.26 Aligned_cols=355 Identities=13% Similarity=0.069 Sum_probs=199.8
Q ss_pred cHHHHHHHHHHhhhhHhhhHHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHhCC
Q 011548 37 TWVTASAHIITAVIGSGVLSLAWA-IAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGG 115 (483)
Q Consensus 37 s~~~~~~~li~~~iG~GiL~LP~~-f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~ 115 (483)
+.|+++...+++|+|+|++.+|-. .+..| ..+++.+++.++........+.|...+. |+.| .....+++.+||
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG-~~~~~~~~i~~~~~~~~al~~aEl~s~~-P~aG----G~y~y~~~~~G~ 75 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAG-NNSLWAWPLLILLIFPIAIVFARLGRHF-PHAG----GPAHFVGMAFGP 75 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC----CHHHhHHHHhCc
Confidence 578999999999999999999975 55556 4678899999999999999999977753 4433 344566789999
Q ss_pred cceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchhHHHHH
Q 011548 116 RSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSIL 195 (483)
Q Consensus 116 ~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~~~s~~ 195 (483)
+.+++..+..++.......+.......++..+.+. . .+. .....+...+++-+.-.+..+....++.+
T Consensus 76 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~--~~~-~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~ 143 (410)
T PRK11021 76 RLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGW---------S--SWQ-LLLAELLTLALLWLLNLRGASSSANLQTV 143 (410)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC---------C--Cch-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999887654444444434444444443321 0 010 11111111122222223455555555554
Q ss_pred HHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhcccCCcchh
Q 011548 196 AAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENK 275 (483)
Q Consensus 196 ~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~~~~~~~ 275 (483)
..+..+..+... +... +....+. ..+ + ....++.++..++....|+|.|.+.+....+|+|||+ |
T Consensus 144 ~~~~~~~i~~~~----~~~~---~~~~~~~-~~~---~-~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k 208 (410)
T PRK11021 144 IALLIVALVVAI----WWAG---DIKPADI-PFP---A-PGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---R 208 (410)
T ss_pred HHHHHHHHHHHH----HHHc---CCchhcC-CCC---C-CCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---c
Confidence 333222111111 1111 1001111 000 0 1122445778899999999999999999999999997 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHH--hhcCCCCC--cccccccCcCCchHHHHHHHHHHHHHHHHhhhccccchHHHHH
Q 011548 276 SMKRATAVGVTTTTLFYIMCGVMGY--LAFGNDAP--GNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVE 351 (483)
Q Consensus 276 ~~~~~~~~a~~~~~~~Y~~~g~~gy--~~fg~~~~--~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~ 351 (483)
+++|++..+..++.++|++..+.-. ..+++... +....-+...-+.+...+..+...++.+.+.........+.+.
T Consensus 209 ~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~ 288 (410)
T PRK11021 209 DFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVW 288 (410)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998765532 22232211 1110000000011222334444455555555443434444444
Q ss_pred HHhh-hhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHH-HcCchHHHHHHhhhhhhhhhhhhhhHHHH
Q 011548 352 KWCN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAM-IFPFFNDFVGLIGAASFWPLTVYFPVEMY 429 (483)
Q Consensus 352 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~p~~~~v~~~~Gs~~~~~~~~ilP~l~~ 429 (483)
.+-+ +..| ++..+.|+.+.| .........+.....++.. ...+++.+.+.... ...+.|+++.+..
T Consensus 289 a~ardg~lP--~~~~k~~~~~tP--------~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~--~~li~y~~~~~a~ 356 (410)
T PRK11021 289 SQAREGRPP--SYLARLSARGVP--------VNALNAVLGCCAVSILLIYALGLNLEALIAYANG--IFVLIYLLCMLAA 356 (410)
T ss_pred HHHccCCcc--HHHHhhccCCCc--------HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 4432 2233 122332333444 3333333333333333322 23578888877553 3468888888888
Q ss_pred HHHhCCC
Q 011548 430 IARTKIR 436 (483)
Q Consensus 430 ~~~~~~~ 436 (483)
+|+++++
T Consensus 357 ~~l~~~~ 363 (410)
T PRK11021 357 CKLLKGR 363 (410)
T ss_pred HHHhccc
Confidence 8876543
No 27
>PRK10746 putative transport protein YifK; Provisional
Probab=99.73 E-value=3.3e-15 Score=153.03 Aligned_cols=371 Identities=11% Similarity=0.044 Sum_probs=214.2
Q ss_pred CccccCcHHHHHHHHHHhhhhHhhhHHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHH
Q 011548 31 RAKRTGTWVTASAHIITAVIGSGVLSLAW-AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (483)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~GiL~LP~-~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~ 109 (483)
+.+|+.+.++..+..++++||+|++..|. +.+..|- ..++..++++++.......+.|.... .|+.| ++.+.+
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~-~P~sG----g~~~y~ 80 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFL-EPVTG----SFAVYA 80 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC----CHHHHH
Confidence 45788899999999999999999999885 5667775 56788888999999999999997655 34433 677788
Q ss_pred HHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCch
Q 011548 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (483)
Q Consensus 110 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l 189 (483)
++.+||+.++++.|..++.......+.....+.+++.+.+. .+...+..+..+++..+. .+..+..
T Consensus 81 ~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~-------------~~~~~~~~~~~~~~~~lN-~~gv~~~ 146 (461)
T PRK10746 81 HRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE-------------MAQWIPALIAVALVALAN-LAAVRLY 146 (461)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------------CchHHHHHHHHHHHHHHH-HHhHHHH
Confidence 99999999999999998887766676666666665544321 111122222222222222 2234444
Q ss_pred hHHHHHHHHHHHHHHHHhhheeee---eecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhh
Q 011548 190 SWLSILAAVMSFAYSSIGIGLSIA---KVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDT 266 (483)
Q Consensus 190 ~~~s~~~~~~~~~~~~i~i~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~e 266 (483)
+.++.......+..++++++.++. ....+........+.... .......+.++..++....|+|.|.+.+....+|
T Consensus 147 ~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E 225 (461)
T PRK10746 147 GEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEH-GGFFAGGWKGFLTALCIVVASYQGVELIGITAGE 225 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCC-CCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 444333222222211111111110 111100000011111000 0001123456778999999999999999999999
Q ss_pred cccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCc----ccccccCcCCchHHHHHHHHHHHHHHHHhhhcc
Q 011548 267 LKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPG----NFLTGFGFYEPFWLVDFANACIAVHLIGAYQVF 342 (483)
Q Consensus 267 m~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~----~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 342 (483)
+|||+ |+++|++..+.....++|++.........+.+..+ +....+..........+.++..++..+.+..-.
T Consensus 226 ~knP~---k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~ 302 (461)
T PRK10746 226 AKNPQ---VTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSG 302 (461)
T ss_pred hcChh---hHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Confidence 99997 99999999999899999987655544444433211 111111000122334556666666777766655
Q ss_pred ccchHHHHHHHhh-hhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhhhh--hhh
Q 011548 343 CQPIFGFVEKWCN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAAS--FWP 419 (483)
Q Consensus 343 ~~p~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~v~~~~Gs~~--~~~ 419 (483)
++...+.+..+-+ +..|. ...+.++.+.| ...+.......+....+....|+-+.+++..-+++ +..
T Consensus 303 ~~~~sR~l~~~a~~g~lP~--~~~~~~~~g~P--------~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~ 372 (461)
T PRK10746 303 MYSCGRMLYALAKNRQLPA--AMAKVSRHGVP--------VAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGM 372 (461)
T ss_pred HHHHHHHHHHHHhCCCcCH--HHHHhCCCCCc--------HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 6666666655542 22232 12222233344 34444443333334444445565455544443333 247
Q ss_pred hhhhhhHHHHHHHhCC
Q 011548 420 LTVYFPVEMYIARTKI 435 (483)
Q Consensus 420 ~~~ilP~l~~~~~~~~ 435 (483)
+.++++.+.+++.+|+
T Consensus 373 i~w~~i~~~~i~~r~~ 388 (461)
T PRK10746 373 VPWFVILISQLRFRRA 388 (461)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888888887653
No 28
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.73 E-value=3.5e-15 Score=153.01 Aligned_cols=369 Identities=13% Similarity=0.083 Sum_probs=211.4
Q ss_pred CCCccccCcHHHHHHHHHHhhhhHhhhHHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHH
Q 011548 29 DGRAKRTGTWVTASAHIITAVIGSGVLSLA-WAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMD 107 (483)
Q Consensus 29 ~~~~~~~~s~~~~~~~li~~~iG~GiL~LP-~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~ 107 (483)
+.+.+|+.+.++..+..+++++|+|++.+| .+.+..|- .+++.+++.+++.......+.|...+. |+.| +..+
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~-P~~G----g~~~ 80 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVAN-PDTG----SFST 80 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC----CHHH
Confidence 334678889999999999999999999999 56777775 578899999999999999999977653 3333 4566
Q ss_pred HHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHH-HHHhhcCCCC
Q 011548 108 VVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACI-QIVLSQIPNF 186 (483)
Q Consensus 108 ~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~pl~~~~~l 186 (483)
.+++.+||+..+++.+..++.....+.+.....+.+++.+.+. . ..+.+..+++ +.-+.-.+..
T Consensus 81 ~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~--~~~~~~~~~~~~~~~~n~~gv 145 (452)
T TIGR01773 81 YADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD-------------I--PLWLFSLILTIVLTLTNLYSV 145 (452)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------C--cHHHHHHHHHHHHHHHHHHhc
Confidence 7889999999999999998887777777777777766654321 1 1122211111 1111122345
Q ss_pred CchhHHHHHHHHHHHHHHHHhhheeeeeecCCCC--CccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhH
Q 011548 187 HKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGP--HATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQ 264 (483)
Q Consensus 187 ~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~ 264 (483)
+....++.......+...+.+++.++.......+ ......+... .....+..+.++..++....|+|.|.+.+....
T Consensus 146 ~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a 224 (452)
T TIGR01773 146 KSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTG-KGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAA 224 (452)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccC-CCCcCcccHHHHHHHHHHHHHHhccHHHHhHHH
Confidence 5555555544443333222222221111111000 0000011000 000001233468889999999999999999999
Q ss_pred hhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCc-----ccccccCcCCchHHHHHHHHHHHHHHHHhh
Q 011548 265 DTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPG-----NFLTGFGFYEPFWLVDFANACIAVHLIGAY 339 (483)
Q Consensus 265 ~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~-----~il~~~~~~~~~~~~~~~~~~~~i~~~~s~ 339 (483)
+|+|||+ |+.+|++..+......+|++.........+.+..+ +...-.......+...+..++..+..+.+.
T Consensus 225 ~E~k~P~---r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~ 301 (452)
T TIGR01773 225 AESSNPI---KSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCL 301 (452)
T ss_pred HhhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Confidence 9999996 89999999888888999987655444433322111 110000001123344455555666666665
Q ss_pred hccccchHHHHHHHhh-hhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCc--hHHHHHHhhhhh
Q 011548 340 QVFCQPIFGFVEKWCN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPF--FNDFVGLIGAAS 416 (483)
Q Consensus 340 pl~~~p~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~--~~~v~~~~Gs~~ 416 (483)
.-.+....+.+..+-. +..| +...+.|+.+.| .........+.+...++...-++ ++.+++..+...
T Consensus 302 ~~~~~~~sR~~~a~ardg~lP--~~~~~v~~~~~P--------~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~ 371 (452)
T TIGR01773 302 NSALYTTSRMLYSLAERGDAP--RVFMKLNKKGVP--------VQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIA 371 (452)
T ss_pred HHHHHHHHHHHHHHHhCCCcC--HHHHhhCCCCCc--------HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5445455555554432 2223 122222233444 33333333333322222222121 445555544443
Q ss_pred hhhhhhhhhHHHHHHHhC
Q 011548 417 FWPLTVYFPVEMYIARTK 434 (483)
Q Consensus 417 ~~~~~~ilP~l~~~~~~~ 434 (483)
.+.|++..+.+++.++
T Consensus 372 --~~~y~~~~~~~i~~r~ 387 (452)
T TIGR01773 372 --LLVYLVIAVSQLRMRK 387 (452)
T ss_pred --HHHHHHHHHHHHHHHH
Confidence 5788887777777654
No 29
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.73 E-value=5e-15 Score=152.30 Aligned_cols=373 Identities=12% Similarity=0.053 Sum_probs=208.3
Q ss_pred CCCccccCcHHHHHHHHHHhhhhHhhhHHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHH
Q 011548 29 DGRAKRTGTWVTASAHIITAVIGSGVLSLAW-AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMD 107 (483)
Q Consensus 29 ~~~~~~~~s~~~~~~~li~~~iG~GiL~LP~-~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~ 107 (483)
+.+.+|+.+.++.....++++||+|++..|. ++++.|. ..+..+++++++.......+.|.... .|.. .++.+
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~-~~~~----~~~~~ 88 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLS-NLEY----KSFSD 88 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC----CcHHH
Confidence 3446888999999999999999999999875 6778886 56778888888888888888886543 2332 25667
Q ss_pred HHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCC
Q 011548 108 VVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFH 187 (483)
Q Consensus 108 ~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~ 187 (483)
.+++.+||..++++.|..++.......+.....+.++..+.+. .....+.++..+ ++-+.-.+..+
T Consensus 89 ya~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~-------------~~~~~~~~~~~~-~~~~iN~~g~~ 154 (469)
T PRK11049 89 FASDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD-------------LSDWVASLAVVL-LLLSLNLATVK 154 (469)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CcHHHHHHHHHH-HHHHHHHHhHH
Confidence 8899999999999999998876555555555555555543321 111111111111 11112223455
Q ss_pred chhHHHHHHHHHHHHHHHHhhheeeeeecCC---C-CCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhh
Q 011548 188 KLSWLSILAAVMSFAYSSIGIGLSIAKVIGD---G-PHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 263 (483)
Q Consensus 188 ~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i 263 (483)
....++.+.....+...+++++.++.....+ . .......+.. +.....+..+.++..++....|+|.|.+.+...
T Consensus 155 ~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~ 233 (469)
T PRK11049 155 MFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLW-NDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTT 233 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccC-CCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHH
Confidence 5556665555444433333332222211110 0 0000011100 000000123346888999999999999999999
Q ss_pred HhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCC----cccccccCcCCchHHHHHHHHHHHHHHHHhh
Q 011548 264 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAP----GNFLTGFGFYEPFWLVDFANACIAVHLIGAY 339 (483)
Q Consensus 264 ~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~----~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~ 339 (483)
.+|+|||+ |+++|++..+...+.++|.+........-+.+.. ++....+......+...+..++..++.+.+.
T Consensus 234 a~E~knP~---r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~ 310 (469)
T PRK11049 234 AAETKDPE---KSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSA 310 (469)
T ss_pred HHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Confidence 99999996 8999999877777788888666554433221110 1111111101123344555555666655555
Q ss_pred hccccchHHHHHHHhh-hhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhhhh--
Q 011548 340 QVFCQPIFGFVEKWCN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAAS-- 416 (483)
Q Consensus 340 pl~~~p~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~v~~~~Gs~~-- 416 (483)
........+.+..+-. +..| +...+.++.+.| .........+......+....|+....++..-+.+
T Consensus 311 ~~~~~~~sR~l~a~ardg~lP--~~~~kv~~~~tP--------~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 380 (469)
T PRK11049 311 NSGVFSTSRMLFGLAQEGVAP--KAFAKLSKRAVP--------AKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAI 380 (469)
T ss_pred HHHHHHHHHHHHHHHhCCCCC--HHHHhhCCCCCC--------HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 4444444444444432 2223 112222222344 33343333332333334445565444444333222
Q ss_pred hhhhhhhhhHHHHHHHhCC
Q 011548 417 FWPLTVYFPVEMYIARTKI 435 (483)
Q Consensus 417 ~~~~~~ilP~l~~~~~~~~ 435 (483)
...+.|+++.+.+++.+++
T Consensus 381 ~~~i~y~~~~~a~~~lr~~ 399 (469)
T PRK11049 381 LFMFVWTIILCSYLVYRKQ 399 (469)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 2357778888888876543
No 30
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.72 E-value=1.8e-14 Score=147.87 Aligned_cols=369 Identities=14% Similarity=0.077 Sum_probs=202.8
Q ss_pred CCCccccCcHHHHHHHHHHhhhhHhhhHHHHH-HHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHH
Q 011548 29 DGRAKRTGTWVTASAHIITAVIGSGVLSLAWA-IAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMD 107 (483)
Q Consensus 29 ~~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~-f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~ 107 (483)
+++.+|+.+.++.....+++++|+|++.+|.. .+..|- ..++.+++.+++.......+.|...+ .|+.| +..+
T Consensus 4 ~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~-~P~~G----g~y~ 77 (457)
T PRK10580 4 KNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVH-NPAAS----SFSR 77 (457)
T ss_pred CccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCC----CHHH
Confidence 34567889999999999999999999999865 666665 56888999999999999999997765 44433 4445
Q ss_pred HHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCC
Q 011548 108 VVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFH 187 (483)
Q Consensus 108 ~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~ 187 (483)
.+++.+||..++++.|..++.....+.+.....+.++..+.+. .+...+.+...+ +.-..-.++.+
T Consensus 78 y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-l~~~ln~~gv~ 143 (457)
T PRK10580 78 YAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPT-------------VPHWIWVLSVVL-IICAVNLMSVK 143 (457)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CChHHHHHHHHH-HHHHHHHccch
Confidence 6788999999999999887766555555555555555443211 111122222222 22222234555
Q ss_pred chhHHHHHHHHHHHHHHHHhhhee----eeeecCCCCCcccccc-ccccccCCchhhHhHHHHHHHHHHHhhcCccchHh
Q 011548 188 KLSWLSILAAVMSFAYSSIGIGLS----IAKVIGDGPHATTLTG-TTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVE 262 (483)
Q Consensus 188 ~l~~~s~~~~~~~~~~~~i~i~~~----i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~ 262 (483)
....++.......+...+++++.+ +......+. +..... .+. +...+..+.+...++....|+|.|.+.+..
T Consensus 144 ~~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~-~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~ 220 (457)
T PRK10580 144 VFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQ-PTGIHNLWSN--GGFFSNGWLGMVMSLQMVMFAYGGIEIIGI 220 (457)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-CCCccccCCC--CCCCCcchHHHHHHHHHHHHHHhCHHHHHH
Confidence 555555444333332222221111 111111100 000000 110 000112234677889999999999999999
Q ss_pred hHhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCC-CC---cccccccCcCCchHHHHHHHHHHHHHHHHh
Q 011548 263 IQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND-AP---GNFLTGFGFYEPFWLVDFANACIAVHLIGA 338 (483)
Q Consensus 263 i~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~-~~---~~il~~~~~~~~~~~~~~~~~~~~i~~~~s 338 (483)
..+|+|||+ |+.+|++..+.....++|...........+.+ .. ++....+......+...+..+...+..+.+
T Consensus 221 ~a~E~knP~---k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 297 (457)
T PRK10580 221 TAGEAKDPE---KSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSA 297 (457)
T ss_pred HHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHH
Confidence 999999996 88999999888888888886654433222211 10 111100000012233344555555555555
Q ss_pred hhccccchHHHHHHHhh-hhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCc--hHHHHHHhhhh
Q 011548 339 YQVFCQPIFGFVEKWCN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPF--FNDFVGLIGAA 415 (483)
Q Consensus 339 ~pl~~~p~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~--~~~v~~~~Gs~ 415 (483)
..-.+....+.+..+-. +..| ++..+.|+.+.| ........+.......+....|+ ++.+.++.+..
T Consensus 298 ~~~~~~~~sR~~~~~ardg~lP--~~~~kv~~~~~P--------~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 367 (457)
T PRK10580 298 INSDVFGVGRMLHGMAEQGSAP--KIFSKTSRRGIP--------WVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFA 367 (457)
T ss_pred HHHHHHHHHHHHHHHHhCCCcC--HHHHhhCCCCCc--------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 54444444444444432 2223 122222333344 33333333322222233333342 33444443322
Q ss_pred hhhhhhhhhhHHHHHHHhCC
Q 011548 416 SFWPLTVYFPVEMYIARTKI 435 (483)
Q Consensus 416 ~~~~~~~ilP~l~~~~~~~~ 435 (483)
..+.|+++.+.+++.+|+
T Consensus 368 --~~~~y~~~~~~~~~lr~~ 385 (457)
T PRK10580 368 --TVWVWIMILLSQIAFRRR 385 (457)
T ss_pred --HHHHHHHHHHHHHHHHHH
Confidence 457888998888886643
No 31
>PRK10836 lysine transporter; Provisional
Probab=99.71 E-value=1.2e-14 Score=150.32 Aligned_cols=371 Identities=13% Similarity=0.050 Sum_probs=197.5
Q ss_pred CCCCccccCcHHHHHHHHHHhhhhHhhhHHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHH
Q 011548 28 DDGRAKRTGTWVTASAHIITAVIGSGVLSLAW-AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYM 106 (483)
Q Consensus 28 ~~~~~~~~~s~~~~~~~li~~~iG~GiL~LP~-~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~ 106 (483)
++++.+|+.+.++.....++++||+|++.+|. +.++.|-...++.+++++++....+..+.|...+. |+.| ...
T Consensus 9 ~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~-P~sG----g~y 83 (489)
T PRK10836 9 EAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYM-PVSG----SFA 83 (489)
T ss_pred CcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCC----CHH
Confidence 34456788999999999999999999999996 57777764578899999999999999999977653 4433 455
Q ss_pred HHHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCC
Q 011548 107 DVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNF 186 (483)
Q Consensus 107 ~~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l 186 (483)
..+++.+|+..++++.|..++................+..+.+ ..+...+..+..+++..+. ..+.
T Consensus 84 ~y~~~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~lN-~~gv 149 (489)
T PRK10836 84 TYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFP-------------DTPGWIWSALFLGVIFLLN-YISV 149 (489)
T ss_pred HHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-------------CCchHHHHHHHHHHHHHHH-HHcc
Confidence 5667889999999998887764333322222222212221110 0111111222222222121 2233
Q ss_pred CchhHHHHHHHHHHHHHHHHhhheeee---eecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhh
Q 011548 187 HKLSWLSILAAVMSFAYSSIGIGLSIA---KVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 263 (483)
Q Consensus 187 ~~l~~~s~~~~~~~~~~~~i~i~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i 263 (483)
+..+..+....+..+...+.+++.++. ...++.. .....++..+ +.+....+.....+.....|+|.|.+.+...
T Consensus 150 ~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~ 227 (489)
T PRK10836 150 RGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAE-PAGWSNWTIG-DAPFAGGFAAMIGVAMIVGFSFQGTELIGIA 227 (489)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-CCccccCCCC-CCCCcccHHHHHHHHHHHHHHHccHHHHHHH
Confidence 333333322222222111111111111 0111110 0000111100 0011122334555666678999999999999
Q ss_pred HhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCccccc------------ccCcCCchHHHHHHHHHH
Q 011548 264 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLT------------GFGFYEPFWLVDFANACI 331 (483)
Q Consensus 264 ~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~------------~~~~~~~~~~~~~~~~~~ 331 (483)
.+|+|||+ |+++|++..+...+.++|++....-....+.+..+.+.. -+......+...+.+++.
T Consensus 228 a~E~knP~---r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~i 304 (489)
T PRK10836 228 AGESEDPA---KNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVI 304 (489)
T ss_pred HHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHH
Confidence 99999996 899999999999999999987665544443221111111 010001123345556666
Q ss_pred HHHHHHhhhccccchHHHHHHHhhh-hCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCc--hHHH
Q 011548 332 AVHLIGAYQVFCQPIFGFVEKWCNK-RWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPF--FNDF 408 (483)
Q Consensus 332 ~i~~~~s~pl~~~p~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~--~~~v 408 (483)
+++++.+..-.++...+.+..+-.+ ..| ++..+-++.+.| ....+...++..+..+.....++ ++.+
T Consensus 305 l~a~~~~~n~~~~~~sR~l~a~Ardg~lP--~~~~kv~~~~~P--------~~All~~~~~~~l~~l~~~~~~~~~~~~l 374 (489)
T PRK10836 305 LTAVLSAGNSGMYASTRMLYTLACDGKAP--RIFAKLSRGGVP--------RNALYATTVIAGLCFLTSMFGNQTVYLWL 374 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcC--HHHHhhCCCCCc--------HHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 6666666655555555555554421 223 122222233344 33444443333333322222221 3445
Q ss_pred HHHhhhhhhhhhhhhhhHHHHHHHhC
Q 011548 409 VGLIGAASFWPLTVYFPVEMYIARTK 434 (483)
Q Consensus 409 ~~~~Gs~~~~~~~~ilP~l~~~~~~~ 434 (483)
.++.+.. ..+.|++.++.+++.+|
T Consensus 375 ~~~~~~~--~~~~y~~~~~a~l~~R~ 398 (489)
T PRK10836 375 LNTSGMT--GFIAWLGIAISHYRFRR 398 (489)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 5555533 35777777777777554
No 32
>TIGR00909 2A0306 amino acid transporter.
Probab=99.71 E-value=7e-15 Score=149.96 Aligned_cols=363 Identities=10% Similarity=0.013 Sum_probs=216.7
Q ss_pred cccCcHHHHHHHHHHhhhhHhhhHHHHHHH-hhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHH
Q 011548 33 KRTGTWVTASAHIITAVIGSGVLSLAWAIA-QLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (483)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~GiL~LP~~f~-~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~ 111 (483)
+|+.+.++.+...+++++|+|++.+|.... ..| ..+++.+++.+++.......+.|..++. |+.| ...+.+++
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G-~~~~l~~li~~~~~~~~a~~~~el~~~~-p~~G----g~y~~~~~ 75 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAG-PAVILSFVLAGLTALFIALVYAELAAML-PVAG----SPYTYAYE 75 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC----cceeeHHH
Confidence 578899999999999999999999996544 445 3466778888888888888888877653 4433 23344567
Q ss_pred HhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccc---cCCcc--hhHHHHHHHHHhhcCCCC
Q 011548 112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCY---TSNNP--LMIIFACIQIVLSQIPNF 186 (483)
Q Consensus 112 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~i~~pl~~~~~l 186 (483)
.+||+.+++..+..++.....+..+....++++..+.+....+. + ..+. .++.. ...+...++.-+...++.
T Consensus 76 ~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~ 152 (429)
T TIGR00909 76 AMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDL--P-AVLTAKPGNGGVFNLPALLIVLFLTYILYLGA 152 (429)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC--c-hhhhcCCcccccccHHHHHHHHHHHHHHHhCc
Confidence 89999999999999888888888888888888887765210000 0 0000 00111 111222222222334567
Q ss_pred CchhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhh
Q 011548 187 HKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDT 266 (483)
Q Consensus 187 ~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~e 266 (483)
+..+.++.+.....+...+++++.++.+... ++..+. .+....++..++...+|+|.|.+.+....+|
T Consensus 153 ~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~-----~~~~~~-------~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E 220 (429)
T TIGR00909 153 KESGKVNDILVVLKVAALLLFAALGAIHFAS-----NNYTPF-------MPMGFGGVGAATALVFFAFIGFEAISTAAEE 220 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhCcH-----HhcCCC-------CCCcHHHHHHHHHHHHHHHhhHHHHHhhHHh
Confidence 7777777777666555444333333322111 111111 0123346778899999999999999999999
Q ss_pred cccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCC----CCcccccccCcCCchHHHHHHHHHHHHHHHHhhhcc
Q 011548 267 LKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND----APGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVF 342 (483)
Q Consensus 267 m~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~----~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 342 (483)
+|||+ |+.+|++..+..++.++|++.........+.+ .++....-......++...+..++..++.+.+....
T Consensus 221 ~~~p~---r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 297 (429)
T TIGR00909 221 VKNPE---RDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAG 297 (429)
T ss_pred ccCcc---ccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99996 88999999999999999998876655433211 011110000011234555667777777777777666
Q ss_pred ccchHHHHHHHhh-hhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhhhhhhhhh
Q 011548 343 CQPIFGFVEKWCN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLT 421 (483)
Q Consensus 343 ~~p~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~v~~~~Gs~~~~~~~ 421 (483)
.....+.+..+-+ +..|+ .+.+.+.+.+.| .........+ ..++. ...+++.+.++.+... .+.
T Consensus 298 ~~~~sR~~~~~a~dg~lP~-~~~~~~~~~~~P--------~~a~~~~~~i---~~~~~-~~~~~~~l~~~~~~~~--~~~ 362 (429)
T TIGR00909 298 IYGTSRVLFAMSRDGLLPG-SLSKVHPKTGTP--------HMSIIIFSLT---AALLA-SLVPLEGLAELTSIGT--LIA 362 (429)
T ss_pred HHHHHHHHHHHHcCCCCcH-HHHHcCCCCCCc--------HHHHHHHHHH---HHHHH-HHcCHHHHHHHHHHHH--HHH
Confidence 6565566555442 22332 111112122334 2222222211 11222 2345777777654333 566
Q ss_pred hhhhHHHHHHHhC
Q 011548 422 VYFPVEMYIARTK 434 (483)
Q Consensus 422 ~ilP~l~~~~~~~ 434 (483)
|++.++.+++.++
T Consensus 363 y~~~~~a~~~lr~ 375 (429)
T TIGR00909 363 FAAVNVAVIILRR 375 (429)
T ss_pred HHHHHHHHHHHHh
Confidence 6666655555443
No 33
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.71 E-value=1.1e-14 Score=150.66 Aligned_cols=368 Identities=15% Similarity=0.057 Sum_probs=207.5
Q ss_pred cccCcHHHHHHHHHHhhhhHhhhHHH-HHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHH
Q 011548 33 KRTGTWVTASAHIITAVIGSGVLSLA-WAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (483)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~GiL~LP-~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~ 111 (483)
+|+.+.++.....+++++|+|++..| .+.+..|-...++.+++.+++.......+.|..... |+.+ -.|...+++
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~-P~~g---G~~~~~~~~ 76 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFY-PVVS---GSFATYASR 76 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC---CCHHHHHHH
Confidence 46788999999999999999999877 467777744447778888999999999999977653 3221 157778899
Q ss_pred HhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchhH
Q 011548 112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSW 191 (483)
Q Consensus 112 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~~ 191 (483)
.+||+.++++.+..++.....+.+.....+.++..+.+ ..+...+..+..++.. +.-.+..+....
T Consensus 77 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~-~in~~gv~~~~~ 142 (478)
T TIGR00913 77 FVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD-------------KVNPAVWIAIFYVFIV-IINLFGVKGYGE 142 (478)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------CCCHHHHHHHHHHHHH-HHHHhcchHHHH
Confidence 99999999999999888777777777776666654321 0111122222222111 222345566565
Q ss_pred HHHHHHHHHHHHHHHhhheeeeeecCCCCCcc--ccccccccccCCc---hhhHhHHHHHHHHHHHhhcCccchHhhHhh
Q 011548 192 LSILAAVMSFAYSSIGIGLSIAKVIGDGPHAT--TLTGTTVGVDVSA---SEKVWRAFQAIGDVAFAYAFSTVLVEIQDT 266 (483)
Q Consensus 192 ~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~a~~~~~faf~~~~~i~~i~~e 266 (483)
++.......+...+.+++.++.....+.+... ............+ ...+.++..++....|+|.|.+......+|
T Consensus 143 ~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E 222 (478)
T TIGR00913 143 AEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGE 222 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHh
Confidence 66544433332222222222211111110000 0000000000111 112456788999999999999999999999
Q ss_pred cccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCC-------------cccccccCcCCchHHHHHHHHHHHH
Q 011548 267 LKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAP-------------GNFLTGFGFYEPFWLVDFANACIAV 333 (483)
Q Consensus 267 m~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~-------------~~il~~~~~~~~~~~~~~~~~~~~i 333 (483)
+|||+ |+++|++..+..++.++|++..+.-....+.+.. ++....+......+...+..++.++
T Consensus 223 ~knP~---r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~ 299 (478)
T TIGR00913 223 AANPR---KSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILI 299 (478)
T ss_pred hcChh---hHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHH
Confidence 99996 8999999999999999999875443333331110 0100000001123444555666666
Q ss_pred HHHHhhhccccchHHHHHHHhh-hhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHc---CchHHHH
Q 011548 334 HLIGAYQVFCQPIFGFVEKWCN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIF---PFFNDFV 409 (483)
Q Consensus 334 ~~~~s~pl~~~p~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---p~~~~v~ 409 (483)
+.+.+..-.+....+.+..+-. +..| ++..+.++.+.| .........+.... ++.... ..++.+.
T Consensus 300 s~~~~~~~~~~~~sR~l~a~ardg~lP--~~f~k~~~~~~P--------~~Ai~~~~~~~~l~-~l~~~~~~~~~~~~l~ 368 (478)
T TIGR00913 300 SVLSAANSSLYASSRTLYALAHQGLAP--KIFAYVDRRGVP--------YVAVIVSSLFGLLA-FLAVSKKEAEVFTWLL 368 (478)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhCCccc--HHHHhhCCCCCC--------HHHHHHHHHHHHHH-HHHHccChHHHHHHHH
Confidence 6666655444444455544432 2223 122222333344 33333333222111 111111 1255555
Q ss_pred HHhhhhhhhhhhhhhhHHHHHHHhC
Q 011548 410 GLIGAASFWPLTVYFPVEMYIARTK 434 (483)
Q Consensus 410 ~~~Gs~~~~~~~~ilP~l~~~~~~~ 434 (483)
++.+. ...+.|+++.+.+++.++
T Consensus 369 ~~~~~--~~~i~y~~~~~~~i~~r~ 391 (478)
T TIGR00913 369 NISGL--SGFFTWMCICLSHIRFRK 391 (478)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHH
Confidence 55433 346888899888887653
No 34
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.70 E-value=2.1e-15 Score=146.24 Aligned_cols=370 Identities=16% Similarity=0.169 Sum_probs=251.7
Q ss_pred CCCccccCcHHHHHHHHHHhhhhHhh-hHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHH
Q 011548 29 DGRAKRTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMD 107 (483)
Q Consensus 29 ~~~~~~~~s~~~~~~~li~~~iG~Gi-L~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~ 107 (483)
+++.+|..+.++--+.-++..||+|. ++-..+.+.+|-- -++.-+++|++.++-++.|.|...+ +|.. .++.+
T Consensus 8 ~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~-~p~~----gSF~~ 81 (462)
T COG1113 8 EQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVA-NPVS----GSFSD 81 (462)
T ss_pred chhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHh-CCCC----CcHHH
Confidence 44456778889999999999999998 5577788889944 4677888999999999999996655 5553 49999
Q ss_pred HHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHH--hhcCCC
Q 011548 108 VVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIV--LSQIPN 185 (483)
Q Consensus 108 ~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p--l~~~~~ 185 (483)
.+++.+|++++++.+|.+++.....+++.+...+.+++.++++ .+++.+.+...+++.. +...|.
T Consensus 82 ~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~-------------vP~Wv~al~~~~l~~~~NL~sVk~ 148 (462)
T COG1113 82 YARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD-------------VPQWVFALAAVVLLLAVNLISVKV 148 (462)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998853 2233343333333333 334566
Q ss_pred CCchh-HHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhH
Q 011548 186 FHKLS-WLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQ 264 (483)
Q Consensus 186 l~~l~-~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~ 264 (483)
..++. |++.+-+..++.++++.+.+.+ ....+++......+.... .--.+..+.+++.++.+.+|||++.+.+-...
T Consensus 149 FGE~EfWfAlIKV~aIi~~Iv~G~~ll~-~g~~~~~~~~g~snl~~h-GGffP~G~~g~~~~~~~v~Faf~GiElvGitA 226 (462)
T COG1113 149 FGELEFWFALIKVAAIIAFIVVGIVLLF-GGFGGGGGAAGFSNLWDH-GGFFPNGFLGFLSALQIVMFAFGGIELVGITA 226 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCCCCccccccccC-CCcCCCchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66666 4455554444444333333222 222222211112111100 00024455688899999999999999999999
Q ss_pred hhcccCCcchhhhHHHHHHHHHHHHHHHH-----HHHhHHHhhcCCCCCcccccccCcCCchHHHHHHHHHHHHHHHHhh
Q 011548 265 DTLKSSPPENKSMKRATAVGVTTTTLFYI-----MCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAY 339 (483)
Q Consensus 265 ~em~~~~~~~~~~~~~~~~a~~~~~~~Y~-----~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~ 339 (483)
.|-|||+ |.++|++..-..-..++|+ +..+..+-.++++.+ +...-|...+-.+...+.|+......+.+.
T Consensus 227 ~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~S-PFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~ 302 (462)
T COG1113 227 AEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGS-PFVTVFSLIGIPFAAGIMNFVVLTAALSAL 302 (462)
T ss_pred HhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCC-cHHHHHHHcCCcccccceeEEEeechhhcc
Confidence 9999997 8888998877777777776 455555555555433 333334333445667788888888888888
Q ss_pred hccccchHHHHHHHhhhhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCc--hHHHHHHhhhhhh
Q 011548 340 QVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPF--FNDFVGLIGAASF 417 (483)
Q Consensus 340 pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~--~~~v~~~~Gs~~~ 417 (483)
---++...+++..+..+. ..-+..++-++.++| ...+..+.....+..++.+..|. |+.+.+..+....
T Consensus 303 NSglystsRmL~~la~~g-~APk~~~klsk~gVP--------~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l 373 (462)
T COG1113 303 NSGLYSTSRMLYSLAKQG-DAPKAFAKLSKRGVP--------VNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLL 373 (462)
T ss_pred cccccccchHHHHHhhcC-cccHhHhhccccCCC--------HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 888888888888775321 111122222333444 67778888888888899999985 6777766665553
Q ss_pred hhhhhhhhHHHHHHHhC
Q 011548 418 WPLTVYFPVEMYIARTK 434 (483)
Q Consensus 418 ~~~~~ilP~l~~~~~~~ 434 (483)
..+.+=.+.|+|.+|
T Consensus 374 --~vW~~I~~s~l~~rk 388 (462)
T COG1113 374 --FVWLMILLSQLKLRK 388 (462)
T ss_pred --HHHHHHHHHHHHHHh
Confidence 444444577777766
No 35
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.70 E-value=2.2e-14 Score=149.78 Aligned_cols=375 Identities=10% Similarity=0.022 Sum_probs=222.2
Q ss_pred CCccccCcHHHHHHHHHHhhhhHhhhHHHHH-HH-hhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHH
Q 011548 30 GRAKRTGTWVTASAHIITAVIGSGVLSLAWA-IA-QLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMD 107 (483)
Q Consensus 30 ~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~-f~-~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~ 107 (483)
++.+|+.+.++.+...+++++|+|++.+|-. .. ..|-. .++.+++.++.+........|...+ -|+.|. .+.|.
T Consensus 24 ~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~-~P~sGg-~Y~y~- 99 (557)
T TIGR00906 24 SKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGAR-VPKAGS-AYLYS- 99 (557)
T ss_pred cchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCc-ceeeH-
Confidence 3467889999999999999999999999864 33 46643 6778888888999999999997665 344443 34554
Q ss_pred HHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCC---cccccCCc-chhHHHHHHHHHhhcC
Q 011548 108 VVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHH---VKCYTSNN-PLMIIFACIQIVLSQI 183 (483)
Q Consensus 108 ~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~i~~pl~~~ 183 (483)
++.+|+...+++.|..++.......+.....++++..++........... ........ ....+..++++-+...
T Consensus 100 --~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~ 177 (557)
T TIGR00906 100 --YVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLS 177 (557)
T ss_pred --HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHH
Confidence 56799999999999988887777777677777777776642110000000 00001011 1111222222222334
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccc-cccccCCchhhHhHHHHHHHHHHHhhcCccchHh
Q 011548 184 PNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGT-TVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVE 262 (483)
Q Consensus 184 ~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~ 262 (483)
++.+..++++.+.....+..++++++.++.+...+ ++... ..+.+.-.+..+.+++.+.....|+|.|...+..
T Consensus 178 ~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~-----~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~ 252 (557)
T TIGR00906 178 FGVKESAWVNKIFTAINILVLLFVIIAGFTKADVA-----NWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIAT 252 (557)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCch-----hccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHH
Confidence 66777777777776666554444444444332111 11100 0000000112345788899999999999999999
Q ss_pred hHhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCC---CCcccccccCcCCchHHHHHHHHHHHHHHHHhh
Q 011548 263 IQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND---APGNFLTGFGFYEPFWLVDFANACIAVHLIGAY 339 (483)
Q Consensus 263 i~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~---~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~ 339 (483)
..+|.|||+ |+++|++..+..+++++|.++.+.-...-+.+ ..+.+...+.....++...+..++.++.+..+.
T Consensus 253 ~aeE~knP~---r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl 329 (557)
T TIGR00906 253 TGEEVKNPQ---RAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSL 329 (557)
T ss_pred hHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 999999996 88999999999999999997766544433322 111221112111234555666666777777666
Q ss_pred hccccchHHHHHHHhh-hhCCCCccccCCC-CccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhhhhh
Q 011548 340 QVFCQPIFGFVEKWCN-KRWPENKFITSEH-GINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASF 417 (483)
Q Consensus 340 pl~~~p~~~~l~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~v~~~~Gs~~~ 417 (483)
...++...+.+..+-. +..|+ +..+-| +.+.| ...... ..+...+++... +++.+.++....
T Consensus 330 ~~~~~~~sRil~amarDGlLP~--~fakv~~r~~tP--------~~Ail~---~~iv~~il~~~~-~~~~l~~l~sig-- 393 (557)
T TIGR00906 330 LGGMFPLPRVIYAMARDGLLFK--WLAQINSKTKTP--------INATVV---SGAIAALMAFLF-DLKALVDLLSIG-- 393 (557)
T ss_pred HHHHHHHHHHHHHHHcCCCccH--HHhccCCCCCCc--------HHHHHH---HHHHHHHHHHHc-CHHHHHHHHHHH--
Confidence 6565565566655542 22231 122212 22333 222222 222223334333 466666664333
Q ss_pred hhhhhhhhHHHHHHHhC
Q 011548 418 WPLTVYFPVEMYIARTK 434 (483)
Q Consensus 418 ~~~~~ilP~l~~~~~~~ 434 (483)
..+.|.++++..+.+|+
T Consensus 394 ~ll~y~lv~~~~l~lR~ 410 (557)
T TIGR00906 394 TLLAYSLVAACVLILRY 410 (557)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 46888888777777653
No 36
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.67 E-value=1.6e-13 Score=149.91 Aligned_cols=256 Identities=15% Similarity=0.059 Sum_probs=167.1
Q ss_pred ccccCcHHHHHHHH-HHhhhhHhhhH-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHH
Q 011548 32 AKRTGTWVTASAHI-ITAVIGSGVLS-LAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (483)
Q Consensus 32 ~~~~~s~~~~~~~l-i~~~iG~GiL~-LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~ 109 (483)
+.++.+++.+++.- +.+++|+|++- +++...++|...++++++++++++..++.-+.+......|+.|. .|. +.
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG---~Y~-yi 149 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGG---AYY-LI 149 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccH---HHH-HH
Confidence 45677888888888 99999999966 56788899988899999999999999999999977653455443 444 44
Q ss_pred HHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCch
Q 011548 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (483)
Q Consensus 110 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l 189 (483)
.+.||+..+..+.+..++.....+..|.+.+++++..+++..+... . .....+.+.+.++..+++..+. ....+..
T Consensus 150 sralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~-~--~~~~~~~~iia~i~l~ll~~In-~~Gvk~~ 225 (953)
T TIGR00930 150 SRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKI-M--VDPINDIRIYGTVTVVVLLGIS-FAGMEWE 225 (953)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-c--cCccccchHHHHHHHHHHHHHH-HhhHHHH
Confidence 6789999999999999998888999999999999988774311100 0 0001111222222222222222 3455555
Q ss_pred hHHHHHHHHHHHHHHHHhhheeeeeecCCCCCcc----ccccccccccCCchhhHh-HHHHHHHHHHHhhcCccchHhhH
Q 011548 190 SWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAT----TLTGTTVGVDVSASEKVW-RAFQAIGDVAFAYAFSTVLVEIQ 264 (483)
Q Consensus 190 ~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~a~~~~~faf~~~~~i~~i~ 264 (483)
..++.+..++.+..++.+++.++..... ....+ +...+... ..+...... +++..++++.+||.|......+.
T Consensus 226 ak~q~vl~vi~ll~ll~~iig~~~~~~~-~~~~g~~~~~~~~f~~n-~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~s 303 (953)
T TIGR00930 226 NKAQVLFLVIVLLSILNIFVGTIIPAFD-KPAKGFFGLGNEIFSEN-FIPGIPGPEGGFFSLFGIFFPSVTGILAGANIS 303 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeecCCC-CCccceeeccchhhhhc-cCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655555444433333333321111 00000 00000000 000001111 36677888888999999999999
Q ss_pred hhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHH
Q 011548 265 DTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGY 300 (483)
Q Consensus 265 ~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy 300 (483)
+|+|||+ |+++|++..+..+++++|+++.++..
T Consensus 304 gElKnP~---r~IPratl~ai~i~~vlYllv~~~~~ 336 (953)
T TIGR00930 304 GDLKDPQ---KAIPKGTLLAILTTTVVYLGSVVLFG 336 (953)
T ss_pred HhccChh---hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999997 89999999999999999998876433
No 37
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.66 E-value=5.3e-14 Score=144.03 Aligned_cols=243 Identities=14% Similarity=0.127 Sum_probs=151.9
Q ss_pred CCccccCcHHHHHHHHHHhhhhHhhhHHHHH-HHhhChh-HHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHH
Q 011548 30 GRAKRTGTWVTASAHIITAVIGSGVLSLAWA-IAQLGWV-AGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMD 107 (483)
Q Consensus 30 ~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~-f~~~G~~-~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~ 107 (483)
++.+|+.+.++.....++.++|+|++..|.. ....|-. ..++.+++.+++.......+.|..... |+.|. .+.|.
T Consensus 4 ~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~-P~~GG-~y~y~- 80 (445)
T PRK11357 4 QELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAY-PENGA-DYVYL- 80 (445)
T ss_pred ccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCC-ceeeH-
Confidence 3467889999999999999999999999876 4455643 356778888888888888999977653 44443 34554
Q ss_pred HHHHHhCCcceeehhhhHHH-HhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHH--HHHhhcCC
Q 011548 108 VVRASLGGRSVQLCGLAQYG-NLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACI--QIVLSQIP 184 (483)
Q Consensus 108 ~~~~~~G~~~~~i~~~~~~~-~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~pl~~~~ 184 (483)
++.+||...++..|..+. ........+.....+++....+ ++......+..++ .+-..-.+
T Consensus 81 --~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~--------------~~~~~~~~~~~~~~~~~~~ln~~ 144 (445)
T PRK11357 81 --KNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP--------------IDPLLGKFIAAGLIIAFMLLHLR 144 (445)
T ss_pred --HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CchHHHHHHHHHHHHHHHHHHHh
Confidence 578999999988886443 3334444555556665543221 0000111111111 11122234
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhH
Q 011548 185 NFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQ 264 (483)
Q Consensus 185 ~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~ 264 (483)
..+....++.+.....+...+++++.++... .+....... .. ......++.++..++....|+|.|.+......
T Consensus 145 gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~-~~~~~~~~~-~~----~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a 218 (445)
T PRK11357 145 SVEGGAAFQTLITIAKIIPFTIVIGLGIFWF-KAENFAAPT-TT----AIGATGSFMALLAGISATSWSYTGMASICYMT 218 (445)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccccCCC-cc----cccccchHHHHHHHHHHHHHHHhhHHHHHhhH
Confidence 5665666666555554443333332222111 111111000 00 00111123467788999999999999999999
Q ss_pred hhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHH
Q 011548 265 DTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGY 300 (483)
Q Consensus 265 ~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy 300 (483)
+|+|||+ |+++|++..+..++.++|++......
T Consensus 219 ~E~k~P~---r~iP~Ai~~~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 219 GEIKNPG---KTMPRALIGSCLLVLVLYTLLALVIS 251 (445)
T ss_pred HHhcCcc---ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999996 89999999999999999997766543
No 38
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.66 E-value=7e-14 Score=143.09 Aligned_cols=242 Identities=13% Similarity=0.033 Sum_probs=153.7
Q ss_pred CCccccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHH
Q 011548 30 GRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (483)
Q Consensus 30 ~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~ 109 (483)
++.+|+.+.++.....++.++|......+.+.+..|+..-++..++.+++.......+.|..... |+.| .....+
T Consensus 3 ~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~-P~~G----g~y~~~ 77 (442)
T TIGR00908 3 RQLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMI-PTAG----GGYGFA 77 (442)
T ss_pred chhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC----CHHHHH
Confidence 34678899999999999999985556668888888986556677777777777777888876653 4433 344566
Q ss_pred HHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCch
Q 011548 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (483)
Q Consensus 110 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l 189 (483)
++.+||+.+++..+..++.......++....++++..+.+. .......++...+.. +.-.+..+..
T Consensus 78 ~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-------------~~~~~~~~~~~~~~~-~ln~~g~~~~ 143 (442)
T TIGR00908 78 RRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-------------GPGWLAALVFYIVFI-GINILGVGEA 143 (442)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------CchhHHHHHHHHHHH-HHHHHHHHHH
Confidence 88999999999999998888777888888888888766532 011111111111111 2122345555
Q ss_pred hHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhccc
Q 011548 190 SWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKS 269 (483)
Q Consensus 190 ~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~ 269 (483)
..++.+..+..+...++++.....+....+.......+. +...+..+.+++.++....|+|.|++.+....+|+||
T Consensus 144 ~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~ 219 (442)
T TIGR00908 144 AKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGA----SSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKN 219 (442)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCC----CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 555544443333222222111111100000000000000 0011122346778888999999999999999999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHh
Q 011548 270 SPPENKSMKRATAVGVTTTTLFYIMCGV 297 (483)
Q Consensus 270 ~~~~~~~~~~~~~~a~~~~~~~Y~~~g~ 297 (483)
|+ |+.+|++..+..++.++|+..-.
T Consensus 220 P~---r~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 220 PK---RDIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred cc---cccCHHHHHHHHHHHHHHHHHHH
Confidence 96 89999999999998888886644
No 39
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.65 E-value=6.5e-14 Score=145.46 Aligned_cols=253 Identities=11% Similarity=0.082 Sum_probs=155.0
Q ss_pred CCCCccccCcHHHHHHHHHHhhhhHhhhHHHHH-HHhhChh-HHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcH
Q 011548 28 DDGRAKRTGTWVTASAHIITAVIGSGVLSLAWA-IAQLGWV-AGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTY 105 (483)
Q Consensus 28 ~~~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~-f~~~G~~-~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y 105 (483)
++++.+|+.+.++.....+++++|+|++..|.. ....|-. ..++.+++.+++.......+.|.... .|+.| ..
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~-~P~sG----G~ 110 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTT-IPKSG----GE 110 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCC----ch
Confidence 334567889999999999999999999999865 5556633 22356677888888888888887665 34433 23
Q ss_pred HHHHHHHhCCcceeehhhhHHHH-hhhhHHHHHHHhhhhHHH-HHhhcccccCCCCcccccCCcchhHHHHH--HHHHhh
Q 011548 106 MDVVRASLGGRSVQLCGLAQYGN-LIGVTIGYTITASISMVA-VKRSNCFHRHGHHVKCYTSNNPLMIIFAC--IQIVLS 181 (483)
Q Consensus 106 ~~~~~~~~G~~~~~i~~~~~~~~-~~g~~~~y~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~pl~ 181 (483)
....++.+||...++..|..+.. ..+.+..+....++++.. +.+. . ..+.....++..+ ++.-+.
T Consensus 111 y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~--------~---~~~~~~~~~i~~~~i~~~~~l 179 (501)
T TIGR00911 111 YNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD--------C---EVPEWAIRLVAVLCVLLLTLV 179 (501)
T ss_pred hhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------C---CCchHHHHHHHHHHHHHHHHH
Confidence 33446789999999888865542 233444455555555422 2210 0 0111111111111 122222
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccc-cccccccCCchhhHhHHHHHHHHHHHhhcCccch
Q 011548 182 QIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLT-GTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVL 260 (483)
Q Consensus 182 ~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i 260 (483)
-.+..+....++.+.....+...+++++.++.....++....+.. .++ ....+..++..++....|+|.|...+
T Consensus 180 n~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~-----~~~~~~~~~~~a~~~~~~af~G~e~~ 254 (501)
T TIGR00911 180 NCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFE-----GTETSAGGIVLAFYSGIWAYGGWNYL 254 (501)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccC-----CCCCcHHHHHHHHHHHHHHHHhHHHH
Confidence 234566666666666655554433333333322212111110000 000 00123456778899999999999999
Q ss_pred HhhHhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcC
Q 011548 261 VEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFG 304 (483)
Q Consensus 261 ~~i~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg 304 (483)
....+|+|||+ |+++|++..+..++.++|++..+.-....+
T Consensus 255 ~~~a~E~knP~---r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~ 295 (501)
T TIGR00911 255 NFVTEEVKNPY---RTLPIAIIISMPIVTFIYVLTNIAYFTVLS 295 (501)
T ss_pred hhhHHHhcCch---hhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999996 899999999999999999988665544443
No 40
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.63 E-value=2.4e-13 Score=138.85 Aligned_cols=351 Identities=13% Similarity=0.074 Sum_probs=205.8
Q ss_pred HHHhhhhHhhhHHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHhCCcceeehhh
Q 011548 45 IITAVIGSGVLSLAW-AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGL 123 (483)
Q Consensus 45 li~~~iG~GiL~LP~-~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~~i~~~ 123 (483)
.++++||+|++..|. +.++.|. ..++.+++.+++.......+.|.... .|+.| ...+.+++.+||+.++++.+
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~-~P~~G----g~y~y~~~~~G~~~gf~~gw 76 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVA-TPDTG----SFSTYADKAIGRWAGYTIGW 76 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC----CHHHHHHHHcChHHHHHHHH
Confidence 368899999999986 6778885 58899999999999999999997765 34433 56667789999999999999
Q ss_pred hHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHH
Q 011548 124 AQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 203 (483)
Q Consensus 124 ~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~ 203 (483)
..++.............+..++.+.+ ..+...+.++..++...+ -.++.+....++.+.....+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~l-N~~gv~~~~~i~~~~~~~ki~~ 142 (446)
T PRK10197 77 LYWWFWVLVIPLEANIAAMILHSWVP-------------GIPIWLFSLVITLALTGS-NLLSVKNYGEFEFWLALCKVIA 142 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-------------cCcHHHHHHHHHHHHHHH-HHHhhHHHhhhHHHHHHHHHHH
Confidence 99887666665555444444433211 011111111111111211 1234555555555555444433
Q ss_pred HHHhhheeeeeecCCCCCccccccc-c-ccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhcccCCcchhhhHHHH
Q 011548 204 SSIGIGLSIAKVIGDGPHATTLTGT-T-VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRAT 281 (483)
Q Consensus 204 ~~i~i~~~i~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~~~~~~~~~~~~~ 281 (483)
.+.+++.++.......+. .+..+. + ++.+...+..+.++..++....|+|.|.+.+....+|+|||+ |+++|++
T Consensus 143 li~~ii~~~~~~~g~~~~-~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~---r~iPrai 218 (446)
T PRK10197 143 ILAFIFLGAVAISGFYPY-AEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPE---KHIVRAT 218 (446)
T ss_pred HHHHHHHHHHHhcCCCCC-CCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hhHHHHH
Confidence 333332222211110000 000000 0 000000112344788999999999999999999999999996 8999999
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcCCCCCc--------ccccccCcCCchHHHHHHHHHHHHHHHHhhhccccchHHHHHHH
Q 011548 282 AVGVTTTTLFYIMCGVMGYLAFGNDAPG--------NFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKW 353 (483)
Q Consensus 282 ~~a~~~~~~~Y~~~g~~gy~~fg~~~~~--------~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~~ 353 (483)
..+...+.++|++..+.-......+..+ ...+.. ...+...+.++..+++.+.+..-.++...+.+..+
T Consensus 219 ~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ 295 (446)
T PRK10197 219 NSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELL---NIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSL 295 (446)
T ss_pred HHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997665543333322111 111122 22345566677777777777776666666666655
Q ss_pred hh-hhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcC--chHHHHHHhhhhhhhhhhhhhhHHHHH
Q 011548 354 CN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFP--FFNDFVGLIGAASFWPLTVYFPVEMYI 430 (483)
Q Consensus 354 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p--~~~~v~~~~Gs~~~~~~~~ilP~l~~~ 430 (483)
-+ +..| ++..+.++.+.| ...........+...+.....| .++.++++.+... .+.|.++.+.++
T Consensus 296 ardg~lP--~~~~~~~~~~~P--------~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i 363 (446)
T PRK10197 296 SRRGDAP--AVMGKINRSKTP--------YVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQL 363 (446)
T ss_pred HcCCCcC--HHHHhhCcCCCc--------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 42 2223 122222233444 4444444333333333333333 3778888777766 478888888877
Q ss_pred HHhC
Q 011548 431 ARTK 434 (483)
Q Consensus 431 ~~~~ 434 (483)
+.+|
T Consensus 364 ~lr~ 367 (446)
T PRK10197 364 RMRK 367 (446)
T ss_pred HHHH
Confidence 7654
No 41
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.56 E-value=1.4e-12 Score=132.92 Aligned_cols=363 Identities=13% Similarity=0.120 Sum_probs=212.1
Q ss_pred cHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHhCC
Q 011548 37 TWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFIT-YYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGG 115 (483)
Q Consensus 37 s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~-~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~ 115 (483)
+++++....+++++|+|++..| .....|.. .++..++.+++. ........|..++ .|+.| .....+++.+||
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~-~p~~G----G~y~~~~~~~g~ 74 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSA-YPSAG----GIYVWVSRAFGP 74 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTT-TTSST----THHHHHHHHH-H
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcC----eeeehhhhcccc
Confidence 6789999999999999999999 66666653 666666666666 5777777786554 44433 555677889999
Q ss_pred cceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchhHHHHH
Q 011548 116 RSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSIL 195 (483)
Q Consensus 116 ~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~~~s~~ 195 (483)
+.+++..+...+.......++.....+++...+.. .. ....+ ......+..++.....-.+..+..++++..
T Consensus 75 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~-~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~ 146 (426)
T PF13520_consen 75 FWGFIVGWLYWVAYILSLASVASSFASYLLSLFGP-----DL--NPSPW-PQFLIAIILILLFTLLNLLGIKLSGKIQNI 146 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG-----GG--TCSHH-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cchhcccceeEEEeeccccccccchhhhhhhcccc-----cc--ccccc-hheeeeecccccceEeeechhhhhhhhhhh
Confidence 99999999998888887877777777776554321 00 00000 011111112222222334556677777766
Q ss_pred HHHHHH-HHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhcccCCcch
Q 011548 196 AAVMSF-AYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPEN 274 (483)
Q Consensus 196 ~~~~~~-~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~~~~~~ 274 (483)
.....+ ...+++++..+.....+. ........+ +.. +......+.+++..+|+|.|.+....+.+|+||
T Consensus 147 ~~~~~i~~~l~~~i~~~~~~~~~~~-~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~----- 216 (426)
T PF13520_consen 147 LTVIKIVIPLLVLIILGIVSFSFSG-FNSLSFSLS---TFF-PSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN----- 216 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCH-HH----SHS---CSS-CSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-----
T ss_pred hhhhhhhhhhhhheeEEEeeecccc-ccccccccc---ccC-CccccchhhHHHHHHhhcccccccccccccccc-----
Confidence 666555 333333333333322211 110000000 000 011123678899999999999999999999774
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCC---cccc---ccc-CcCCchHHHHHHHHHHHHHHHHhhhccccchH
Q 011548 275 KSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAP---GNFL---TGF-GFYEPFWLVDFANACIAVHLIGAYQVFCQPIF 347 (483)
Q Consensus 275 ~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~---~~il---~~~-~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~ 347 (483)
|+.+|++..+..++.++|.+..+......+++.. ++.. ..+ .....++...+..+...+..+.+.........
T Consensus 217 k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s 296 (426)
T PF13520_consen 217 KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGAS 296 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchh
Confidence 6899999999999999999988877777665422 1211 011 00112355666677777777777777776666
Q ss_pred HHHHHHhh-hhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcC--chHHHHHHhhhhhhhhhhhhh
Q 011548 348 GFVEKWCN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFP--FFNDFVGLIGAASFWPLTVYF 424 (483)
Q Consensus 348 ~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p--~~~~v~~~~Gs~~~~~~~~il 424 (483)
+.+..+-+ +..| + ...+.|+.+.| .........+.....++....| ++..+.+..... ..+.+++
T Consensus 297 R~l~~~a~d~~lP-~-~~~~~~k~~~P--------~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~ 364 (426)
T PF13520_consen 297 RLLYAMARDGVLP-K-WFAKVNKFGTP--------YNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVG--YLISYIL 364 (426)
T ss_dssp HHHHHHHHTTSSS-G-GGGTTSSSSSC--------HHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHH--THHHHHH
T ss_pred hcccccccccchh-h-hhhhccccCCc--------eeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHH
Confidence 67766654 3445 2 23333355555 2222222222211111112223 466666654433 4677777
Q ss_pred hHHHHHHHhCCC
Q 011548 425 PVEMYIARTKIR 436 (483)
Q Consensus 425 P~l~~~~~~~~~ 436 (483)
+.+.+++.++++
T Consensus 365 ~~~~~~~~~~~~ 376 (426)
T PF13520_consen 365 VILAVLFLRRKR 376 (426)
T ss_dssp HHHHHHHTHHHS
T ss_pred HHHHHHHHhhhc
Confidence 777777655443
No 42
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.54 E-value=2.1e-12 Score=128.56 Aligned_cols=285 Identities=12% Similarity=0.058 Sum_probs=183.4
Q ss_pred cCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHhC
Q 011548 35 TGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLG 114 (483)
Q Consensus 35 ~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G 114 (483)
|.|.+|..+.++++++|+|++.+|....+.+-..+.+..++.+++.......+.+..++.+ + .+..+..++.+|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p-~-----~~~~~~~~~~~G 75 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFP-E-----KNFSEILSKYLG 75 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCC-C-----CCHHHHHHHHhh
Confidence 5788999999999999999999999877655556778888899999999999999877643 2 278899999999
Q ss_pred CcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchh-HHHHHHHHHhhcCCCCCchhHHH
Q 011548 115 GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLM-IIFACIQIVLSQIPNFHKLSWLS 193 (483)
Q Consensus 115 ~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~pl~~~~~l~~l~~~s 193 (483)
|+.+++..+...++....+.......++.++.... + +...+. .+..++..-....++++....++
T Consensus 76 k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~----------~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~ 141 (359)
T TIGR00912 76 KILGRLLSILFILYFFLIAAYLIRIFADFIKTYLL----P----------RTPIIVIIILIIIVSIYIVRKGIEVLLRTA 141 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C----------CCCHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 99999999888877777766666666666654431 0 011222 22222222223345677777777
Q ss_pred HHHHHHHHHH-HHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHH-HHHHHhhcCccchHhhHhhcccCC
Q 011548 194 ILAAVMSFAY-SSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAI-GDVAFAYAFSTVLVEIQDTLKSSP 271 (483)
Q Consensus 194 ~~~~~~~~~~-~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~faf~~~~~i~~i~~em~~~~ 271 (483)
.+.....+.. .+++......+. + ..+..+.. +.+..+...+. +...++|.+...+....+++|||
T Consensus 142 ~i~~~~~i~~~~~il~~~~~~~~-~----~~~l~P~~-------~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~- 208 (359)
T TIGR00912 142 EILLIIFLILFILVLILLAPKLG-N----IKNLLPVL-------ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK- 208 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc-c----HHHccCcc-------ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-
Confidence 6666554443 122222211110 0 11111110 11223444444 47889999999999999999987
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCccc----ccccCcC-Cch---HHHHHHHHHHHHHHHHhhhccc
Q 011548 272 PENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNF----LTGFGFY-EPF---WLVDFANACIAVHLIGAYQVFC 343 (483)
Q Consensus 272 ~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~i----l~~~~~~-~~~---~~~~~~~~~~~i~~~~s~pl~~ 343 (483)
|+.+|+...+..++.++|...-+.....+|.+..++. .+..... -++ ....+.-....+....+.-+..
T Consensus 209 ---~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~ 285 (359)
T TIGR00912 209 ---KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYL 285 (359)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988888888885532211 1111000 011 1223333445566666666666
Q ss_pred cchHHHHHHHhh
Q 011548 344 QPIFGFVEKWCN 355 (483)
Q Consensus 344 ~p~~~~l~~~~~ 355 (483)
+.....+.++++
T Consensus 286 ~~~~~~~~~~~~ 297 (359)
T TIGR00912 286 YIAVKGLSKLFK 297 (359)
T ss_pred HHHHHHHHHHhC
Confidence 666677776653
No 43
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.53 E-value=4.2e-12 Score=126.17 Aligned_cols=367 Identities=15% Similarity=0.085 Sum_probs=253.2
Q ss_pred CccccCcHHHHHHHHHHhhhhHhh-hHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHH
Q 011548 31 RAKRTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (483)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~Gi-L~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~ 109 (483)
+.+|+...+.-.+.-+++.||+|. ++...+.++.|-...++..++++.+.+..+..|.|.+.... ..| ++...+
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P-~sG----sF~~ya 115 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYP-VSG----SFSTYA 115 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCC----chhhhh
Confidence 357888888999999999999998 56889999999999999999999999999999999777643 432 699999
Q ss_pred HHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhc--CCCCC
Q 011548 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ--IPNFH 187 (483)
Q Consensus 110 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~--~~~l~ 187 (483)
.+..++..++.+.|.+++....++...++..+..++.+.+. ..+...|..++.++++.+-. .|...
T Consensus 116 ~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~------------~v~~~~w~~iF~~~i~~iN~~~Vk~fG 183 (541)
T COG0833 116 TRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPD------------TVPPWIWIAIFLVLIFLLNLFGVKGFG 183 (541)
T ss_pred hhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCC------------CCChHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999888642 13445777777777666654 46666
Q ss_pred chh-HHHHHHHHHHHHHHHHhhheeeeeecCC-CCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHh
Q 011548 188 KLS-WLSILAAVMSFAYSSIGIGLSIAKVIGD-GPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQD 265 (483)
Q Consensus 188 ~l~-~~s~~~~~~~~~~~~i~i~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~ 265 (483)
+.. |+|.+-++.++.+.++.++. +.....+ +....+.... +......+.++...+-+..|||.|.+.+---..
T Consensus 184 E~Efw~s~iKV~~ii~Fii~gii~-~~Gg~~~~~~ig~~yw~~----pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAg 258 (541)
T COG0833 184 ETEFWFSSIKVLTIIGFIILGIII-ICGGGPTHGYIGFNYWHD----PGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAG 258 (541)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCCCcceeeecC----CCCCCcchHHHHHHHhhheeeeeceeeeeeeec
Confidence 666 44544444444333333222 1122221 1111111111 112234466788899999999999999999999
Q ss_pred hcccCCcchhhhHHHHHHHHHHHHHHHHHHH-hHHHhhcCCC-----------CCcccccccCcCCchHHHHHHHHHHHH
Q 011548 266 TLKSSPPENKSMKRATAVGVTTTTLFYIMCG-VMGYLAFGND-----------APGNFLTGFGFYEPFWLVDFANACIAV 333 (483)
Q Consensus 266 em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g-~~gy~~fg~~-----------~~~~il~~~~~~~~~~~~~~~~~~~~i 333 (483)
|-+||+ |.+||++.-...-..++|++.- +.|.+.-.++ ..++....+.+.+-..+..+.|+.+++
T Consensus 259 Es~nP~---K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~ 335 (541)
T COG0833 259 ESENPR---KSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILT 335 (541)
T ss_pred ccCCch---hhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHH
Confidence 999997 8999999999999999998432 2233322222 111222222222233567889999999
Q ss_pred HHHHhhhccccchHHHHHHHhhhhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcC--chHHHHHH
Q 011548 334 HLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFP--FFNDFVGL 411 (483)
Q Consensus 334 ~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p--~~~~v~~~ 411 (483)
+++.+---.++...+++..+-+... .-|+..+-++...| ...+..+.+..+++++-+..-. .++-++++
T Consensus 336 svlSa~NS~lYasSR~L~sLA~~g~-APk~f~~~~r~GvP--------~~al~vt~~fg~lafl~~~~~~~~vf~wL~~i 406 (541)
T COG0833 336 SVLSAANSGLYASSRMLYSLAKQGK-APKIFAKVDRRGVP--------LVALLVTLLFGLLAFLNSSFKETTVFNWLLNI 406 (541)
T ss_pred HHHHHhhccchHHHHHHHHHHhcCC-CchHHHhhCCCCCc--------hHHHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 9999988888888888887764321 11223333333344 6667777777777777666632 37888888
Q ss_pred hhhhhhhhhhhhhhHHHHHHHh
Q 011548 412 IGAASFWPLTVYFPVEMYIART 433 (483)
Q Consensus 412 ~Gs~~~~~~~~ilP~l~~~~~~ 433 (483)
.|... .++++-=++.|++-|
T Consensus 407 sg~s~--~i~W~~I~~shirFR 426 (541)
T COG0833 407 SGLSG--FIAWGSICLSHIRFR 426 (541)
T ss_pred HHHHH--HHHHHHHHHHHHHHH
Confidence 88776 455555566666643
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.51 E-value=9.1e-12 Score=128.54 Aligned_cols=371 Identities=13% Similarity=0.107 Sum_probs=219.5
Q ss_pred CCCCccccCcHHH-HHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHH
Q 011548 28 DDGRAKRTGTWVT-ASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYM 106 (483)
Q Consensus 28 ~~~~~~~~~s~~~-~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~ 106 (483)
++++.+|+.+.++ .....++.++|.|++.+|......+ ....+.+++.+++.......+.|..+ ..|+.| .+.
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~-~~p~~G----G~y 79 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSS-AIPSAG----GAY 79 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCC----Cee
Confidence 3444556677777 8888889999999999998877665 33344466666777777777888776 455544 445
Q ss_pred HHHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHh--hcCC
Q 011548 107 DVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVL--SQIP 184 (483)
Q Consensus 107 ~~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl--~~~~ 184 (483)
+.+++.+||+.++++.+..++.......+........+..+.+... . . ..+...+..+..+++..+ .-.+
T Consensus 80 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~----~~~~~~~~~~~~~~~~~~~~ln~~ 151 (466)
T COG0531 80 AYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG---L-L----SIGPLLIILIALALIALLTLLNLR 151 (466)
T ss_pred eehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch---h-h----cCCchHHHHHHHHHHHHHHHHHHh
Confidence 5567899999999999999998888888888888886666653200 0 0 001112222222222222 2235
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhH
Q 011548 185 NFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQ 264 (483)
Q Consensus 185 ~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~ 264 (483)
..+.....+.+.....+...+++.+..+.....+.. ....... ...........++....++|.|.+.+.+..
T Consensus 152 G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a 224 (466)
T COG0531 152 GIKASAKINSIITILKIIILLIFIILGLFAFGFSNG--NLFAPFN-----PGGGSFGGILAAILLAFFAFTGFEAIATLA 224 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc--ccCCCcc-----cccchHHHHHHHHHHHHHHhhcHHHHHHHH
Confidence 566666666666666655555554444443322210 0000000 011222367789999999999999999999
Q ss_pred hhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCC-CCcccccccC------cCCchHHHHHHHHHHHHHHHH
Q 011548 265 DTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND-APGNFLTGFG------FYEPFWLVDFANACIAVHLIG 337 (483)
Q Consensus 265 ~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~-~~~~il~~~~------~~~~~~~~~~~~~~~~i~~~~ 337 (483)
+|+|||. |+++|++..+...+.++|++..+......+++ .... ..+.| .....+...+..+...++...
T Consensus 225 ~E~knp~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~ 300 (466)
T COG0531 225 EEVKNPK---RTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAAS-APSAPLALAALFGGGNWGAIIIAILALLSLFG 300 (466)
T ss_pred HHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhcc-CCCccHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 9999986 78999999999999999998888877777652 2111 11111 111235566666777777777
Q ss_pred hhhccccchHHHHHHHhh-hhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHH--cCchHHHHHHhhh
Q 011548 338 AYQVFCQPIFGFVEKWCN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMI--FPFFNDFVGLIGA 414 (483)
Q Consensus 338 s~pl~~~p~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~p~~~~v~~~~Gs 414 (483)
+.........+.+..+-. +..|+ .+.+.+.+.+.| .........+.. .+++... ...++.+.++...
T Consensus 301 ~~~~~~~~~sR~~~~~ardg~lP~-~~~~~~~~~~~P--------~~a~~~~~ii~~-~l~~~~~~~~~~~~~l~~~~~~ 370 (466)
T COG0531 301 SLLAWILAVSRVLYAMARDGLLPK-FFAKVNPKGRTP--------VIALILTGIISL-ILLLLFPLSSIAFNALVSLASV 370 (466)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccH-HHHHhCCCCCCC--------HHHHHHHHHHHH-HHHHHhhccccHHHHHHHHHHH
Confidence 765444444444443332 22343 111111122233 333333333333 1111111 1235566655443
Q ss_pred hhhhhhhhhhhHHHHHHHhCC
Q 011548 415 ASFWPLTVYFPVEMYIARTKI 435 (483)
Q Consensus 415 ~~~~~~~~ilP~l~~~~~~~~ 435 (483)
. ..+.|.++.+..++.+++
T Consensus 371 ~--~~~~y~~~~~~~~~~~~~ 389 (466)
T COG0531 371 A--FLIAYLLVALALLVLRRK 389 (466)
T ss_pred H--HHHHHHHHHHHHHHHhhc
Confidence 3 478888888888876654
No 45
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.50 E-value=6.5e-11 Score=122.55 Aligned_cols=383 Identities=9% Similarity=-0.003 Sum_probs=192.3
Q ss_pred CCCCCccccCcHHHHHHHHHHhhhh--HhhhH-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcC
Q 011548 27 DDDGRAKRTGTWVTASAHIITAVIG--SGVLS-LAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNY 103 (483)
Q Consensus 27 ~~~~~~~~~~s~~~~~~~li~~~iG--~GiL~-LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~ 103 (483)
..+++.+|+.+.++.+..-+. ++| +|+.. ++.+..+.|-...+..+++.+++.......+.|.... .|+.|
T Consensus 5 g~~~~l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~-~P~~G---- 78 (482)
T TIGR00907 5 GYKPELKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSA-YPTSG---- 78 (482)
T ss_pred CCcceeecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhh-CCCCc----
Confidence 344556788888887777666 444 66644 4556777776556778899999999999999997665 44433
Q ss_pred cHHHHHHHHhCC----cceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHH-
Q 011548 104 TYMDVVRASLGG----RSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQI- 178 (483)
Q Consensus 104 ~y~~~~~~~~G~----~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~- 178 (483)
+....+++++|+ ...+++.|..++.....+.+.....++++....... .+. . .+..+.....++..+++.
T Consensus 79 g~y~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~-~---~~~~~~~~~~~i~~~~~~~ 153 (482)
T TIGR00907 79 GQYFWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLT-TPG-R---EYIPTRWHIFGIMIGIHLI 153 (482)
T ss_pred cHHHHHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-C---CccccCchhhhhHHHHHHH
Confidence 344455667764 455666777766666666666666666666544211 000 0 001111111122211111
Q ss_pred -HhhcCCCCCchhHHHHHHHHHHHHHHHHhhheeeeeecCC-CCCccccccccccccC-CchhhHhHHHHHHHHHHHhhc
Q 011548 179 -VLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGD-GPHATTLTGTTVGVDV-SASEKVWRAFQAIGDVAFAYA 255 (483)
Q Consensus 179 -pl~~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~faf~ 255 (483)
-+.-.+..+....++.+..+..+...+++++..+.....+ ...+....+... +. ......+....++....|+|.
T Consensus 154 ~~~in~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~--~~~g~~~~g~~~~~~~~~~~fsf~ 231 (482)
T TIGR00907 154 HALINSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNN--STGGWKPGGFAFLLGLLNPAWSMT 231 (482)
T ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeC--CCCCcCCCchhhhhhhhhhHHHhc
Confidence 1212233444555554443333322221211111111110 000000111110 00 001112345566777889999
Q ss_pred CccchHhhHhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCC------CC-cccccccCc-CCchHHHHHH
Q 011548 256 FSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND------AP-GNFLTGFGF-YEPFWLVDFA 327 (483)
Q Consensus 256 ~~~~i~~i~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~------~~-~~il~~~~~-~~~~~~~~~~ 327 (483)
|.+......+|+|||+ |+++|++..+..+..++|.+..+.-+...+|. .. +++.+.+.. ...++...+.
T Consensus 232 G~e~~~~~a~E~knP~---r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~ 308 (482)
T TIGR00907 232 GYDGTAHMAEEIENPE---VVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFL 308 (482)
T ss_pred CcchhhHHHHhcCChh---hhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHH
Confidence 9999999999999996 89999999998877665544333333333321 00 011111100 0111333334
Q ss_pred HHHHHHHHHHhhhccccchHHHHHHHhh-hhCCCCccccCCCCc-cCCCCCcccchhHHHHHHHHHHHHHHHHHHH-cCc
Q 011548 328 NACIAVHLIGAYQVFCQPIFGFVEKWCN-KRWPENKFITSEHGI-NVPCYGVYHVNSFRLVWRTAYVIVSAVLAMI-FPF 404 (483)
Q Consensus 328 ~~~~~i~~~~s~pl~~~p~~~~l~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~p~ 404 (483)
.....+..+.+..-.+....+.+..+-. +..|.+++..+.|+. +.| .....+...+..+..++... .+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P--------~~ai~~~~~i~~~~~~~~~~~~~~ 380 (482)
T TIGR00907 309 LCLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVP--------LNAVWLSAVWIILIGLLGLGSSTA 380 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCc--------HHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4444444444444444444444444432 234533333333332 344 33333333222221111110 124
Q ss_pred hHHHHHHhhhhhhhhhhhhhhHHHHHHHhCC
Q 011548 405 FNDFVGLIGAASFWPLTVYFPVEMYIARTKI 435 (483)
Q Consensus 405 ~~~v~~~~Gs~~~~~~~~ilP~l~~~~~~~~ 435 (483)
++.++++.+.. ..+.|.+|...+++.+|+
T Consensus 381 f~~l~~~~~~~--~~i~y~~~~~~~l~~~~~ 409 (482)
T TIGR00907 381 FQAIFSVCTVA--LDVSYVIPIICKLAKGRN 409 (482)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHhcCC
Confidence 77777765444 468899999998876654
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.50 E-value=1.3e-10 Score=119.84 Aligned_cols=264 Identities=10% Similarity=-0.032 Sum_probs=151.7
Q ss_pred CCCCCccccCcHHHHHHHHHHhh-hhHhhhHHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCc
Q 011548 27 DDDGRAKRTGTWVTASAHIITAV-IGSGVLSLAW-AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYT 104 (483)
Q Consensus 27 ~~~~~~~~~~s~~~~~~~li~~~-iG~GiL~LP~-~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~ 104 (483)
+.+++.+|+-+.++.+..-++.+ +|+|+.++|. +....|- ..+..+++.++........+.|...+ .|+.| .
T Consensus 6 g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~-~P~aG----G 79 (475)
T TIGR03428 6 GYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAAR-YPISG----A 79 (475)
T ss_pred CCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCC----C
Confidence 34556778899999888888875 8999999875 4555665 56778888888888888889987765 44444 3
Q ss_pred HHHHHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcc-cccCCCCcccccCCcchhHHHHH-HHHHhhc
Q 011548 105 YMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNC-FHRHGHHVKCYTSNNPLMIIFAC-IQIVLSQ 182 (483)
Q Consensus 105 y~~~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-i~~pl~~ 182 (483)
....+++.+||...+++.|..++.......+........+..+.+... ...+.+..........+.+...+ ++.-+.-
T Consensus 80 ~Y~~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in 159 (475)
T TIGR03428 80 IYQWSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVIN 159 (475)
T ss_pred HHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHH
Confidence 344567889999999999988877655444444444444433321100 00000000000000111111111 1111122
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHh
Q 011548 183 IPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVE 262 (483)
Q Consensus 183 ~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~ 262 (483)
.+..+....++.+..+..+...+++++..+..... +. ....... . ....+.....+..+.....|+|.|.+.+..
T Consensus 160 ~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~-~~-~~~f~~~-~--~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~ 234 (475)
T TIGR03428 160 CIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQR-GP-GVVFDTS-V--TGASPGYYGAFLVSGLMAAYVMVGFGSAGE 234 (475)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-Cc-ceeeecC-C--CCCCccHHHHHHHHHHHHHHHhcCcchHHH
Confidence 23456666666555544443333333222222111 10 0000000 0 000011123455577778899999999999
Q ss_pred hHhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcC
Q 011548 263 IQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFG 304 (483)
Q Consensus 263 i~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg 304 (483)
..+|+|||+ |+.+|++..+..+..++|.+.-+......+
T Consensus 235 ~aeE~knP~---r~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 235 LSEETKNPR---RVAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHHhcCcc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999997 899999999999888777655555444444
No 47
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.41 E-value=5.4e-10 Score=115.96 Aligned_cols=254 Identities=9% Similarity=0.062 Sum_probs=134.0
Q ss_pred ccccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHhcccCCCCc-CCCCcCcHHHHH
Q 011548 32 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFIT-YYTSTLLSDCYRSPDPV-TGKRNYTYMDVV 109 (483)
Q Consensus 32 ~~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~-~~t~~~l~~~~~~~~~~-~~~~~~~y~~~~ 109 (483)
++||.++++.+...+++++|.+ .+|.+++..|.. +++..++.+++. ......+.|.... .|+ .| .-....
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~-~P~~aG----G~Y~w~ 76 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSA-FKDEKG----GIYSWM 76 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCC----cHHHHH
Confidence 4678999999999999999976 568888888864 555565566554 3455667776654 332 23 334455
Q ss_pred HHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhH-HHHHhhcccccCCCCcccccCCc-chhHHHHHH--HHHhhcCCC
Q 011548 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISM-VAVKRSNCFHRHGHHVKCYTSNN-PLMIIFACI--QIVLSQIPN 185 (483)
Q Consensus 110 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i--~~pl~~~~~ 185 (483)
++++||+.+++..+..+.................. ..+... +... .......+.. ...++..+. ++-..-.|.
T Consensus 77 ~~~~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g 153 (496)
T PRK15238 77 NKSVGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGK--DTTQ-TWHFLGLNSTQVVGILAVIWMILVTFVASKG 153 (496)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--chhh-hhhhhcccchHHHHHHHHHHHHHHHHHHccc
Confidence 78999999988776544433322211111000000 001100 0000 0000001111 111112122 222233466
Q ss_pred CCchhHHHHHHHHHHHHHHH-HhhheeeeeecCCCCC--ccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHh
Q 011548 186 FHKLSWLSILAAVMSFAYSS-IGIGLSIAKVIGDGPH--ATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVE 262 (483)
Q Consensus 186 l~~l~~~s~~~~~~~~~~~~-i~i~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~ 262 (483)
++..+.++.++....+...+ ++++..+.....+... +.+...+...++ +......+...++....|+|.|.+.+..
T Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~G~e~~~~ 232 (496)
T PRK15238 154 INKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPN-PAYQSPIAVLSFVVFAIFAYGGIEAVGG 232 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCC-CccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 77777777655443332111 1111001111111110 000000000000 0011113566778889999999999999
Q ss_pred hHhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHH
Q 011548 263 IQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGY 300 (483)
Q Consensus 263 i~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy 300 (483)
..+|+|||+ |+++|++..+...+.++|.+..++..
T Consensus 233 ~a~E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~~~~ 267 (496)
T PRK15238 233 LVDKTENPE---KNFPKGIIIAAIVISIGYSLAIFLWG 267 (496)
T ss_pred HHHhccCCC---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999996 89999999999999999997654443
No 48
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.37 E-value=6e-10 Score=115.05 Aligned_cols=367 Identities=12% Similarity=0.096 Sum_probs=169.9
Q ss_pred cCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHhcccCCCCcCCCCcCcHHHHHHHHh
Q 011548 35 TGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITY-YTSTLLSDCYRSPDPVTGKRNYTYMDVVRASL 113 (483)
Q Consensus 35 ~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~-~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~ 113 (483)
|.+.+.-++..+.+++ ++-.+|.. ++.|. ..++.+++.+++.. -......|.... .|+.| .....+++.+
T Consensus 2 ~~~~~~l~~~~~~~v~--~~~~~~~~-a~~G~-~~~~~~~i~~~~~~ip~al~~aEL~~~-~P~~G----G~y~~~~~a~ 72 (474)
T TIGR03813 2 KLTVVTLAIMNITAVV--SLRGLPAE-AEYGL-SAAFYYLFAAIFFLVPVSLVAAELATA-WPEKG----GVFRWVGEAF 72 (474)
T ss_pred cccHHHHHHHHHHHHH--HhhcchHH-HHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCC----CceeeHhhhc
Confidence 4555544444444444 44556765 56774 34455555555443 366666776654 34433 3445568899
Q ss_pred CCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchh-HHHHHHHHH--hhcCCCCCchh
Q 011548 114 GGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLM-IIFACIQIV--LSQIPNFHKLS 190 (483)
Q Consensus 114 G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~p--l~~~~~l~~l~ 190 (483)
|++.+++..+..++.......+-+......+....+.... ... .....+.. .+.+++.+. +.-.++++..+
T Consensus 73 G~~~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~ 146 (474)
T TIGR03813 73 GARWGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATV-----DES-LAGNKLYVLVSVLFVYWLATFIALRGVAAFT 146 (474)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-----Ccc-cccccHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 9999999998887765432222222222222211110000 000 00111221 122222222 22345566555
Q ss_pred HHHHHHHH-HHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhccc
Q 011548 191 WLSILAAV-MSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKS 269 (483)
Q Consensus 191 ~~s~~~~~-~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~ 269 (483)
.++.+... ..+...+++++.++.....++....+ ..+....++.....+.. ....+.|+|.|.+.+....+|+||
T Consensus 147 ~i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~---~~~~~~~p~~~~~~~~~-~~~~~~~af~G~e~~~~~a~E~kn 222 (474)
T TIGR03813 147 KVAKWGGIVGTIIPAAILVILGISYLLTGGESQIP---LRWDDAFPDFTNFDNVV-LAASIFLFYAGMEMNAVHVKDVDN 222 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCHHHhCCCccccccHH-HHHHHHHHHhchhHhHHHHHhccC
Confidence 55544322 12222122222222211111111000 00000000001112222 223467899999999999999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCc---ccc----cccCcCCchHHHHHHHHHHHHHHHHhhhcc
Q 011548 270 SPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPG---NFL----TGFGFYEPFWLVDFANACIAVHLIGAYQVF 342 (483)
Q Consensus 270 ~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~---~il----~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 342 (483)
|+ |+++|++..+..++.++|.+..+.-....+++..+ ... +.+......+...+..+...+..+.+....
T Consensus 223 P~---r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~ 299 (474)
T TIGR03813 223 PD---KNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTW 299 (474)
T ss_pred cc---cchhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 97 89999999999999999987666655444433211 100 000000123344444444555555554433
Q ss_pred ccchHHHHHHHhh-hhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhhhh--hhh
Q 011548 343 CQPIFGFVEKWCN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAAS--FWP 419 (483)
Q Consensus 343 ~~p~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~v~~~~Gs~~--~~~ 419 (483)
+....+.+...-+ +..| ++..+.++.+.| ........++.....++....|+.+..++...+.+ ...
T Consensus 300 ~~~~sR~~~a~ardg~lP--~~~~kv~k~~~P--------~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~ 369 (474)
T TIGR03813 300 VAGPSSGMLAVAKAGYLP--TFFQKTNKNGMP--------IHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYL 369 (474)
T ss_pred HHHHHHHHHHHhhcCCCC--HHHhccCCCCCc--------HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2333333333321 2223 122222233334 33333333332333333344566555555444433 234
Q ss_pred hhhhhhHHHHHHHh
Q 011548 420 LTVYFPVEMYIART 433 (483)
Q Consensus 420 ~~~ilP~l~~~~~~ 433 (483)
+.|+++.+.+++++
T Consensus 370 i~y~~~~~a~i~lr 383 (474)
T TIGR03813 370 VMYLLMFASAIYLR 383 (474)
T ss_pred HHHHHHHHHHHHHH
Confidence 67778877766655
No 49
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.37 E-value=4.7e-10 Score=116.29 Aligned_cols=239 Identities=11% Similarity=0.000 Sum_probs=123.5
Q ss_pred cccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHH--HHHHHHHhcccCCCCcCCCCcCcHHHHHH
Q 011548 33 KRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITY--YTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (483)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~--~t~~~l~~~~~~~~~~~~~~~~~y~~~~~ 110 (483)
+||.+.++.++..+.+++ ++..+| .+++.|+ +.+.+.+++.+.+ -......|......++.| .....++
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G----G~y~wv~ 73 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYP-TFATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEEG----GIFAWVS 73 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC----Ceeeehh
Confidence 466888777666666665 557888 4777883 5555555555543 366677776654322222 3334557
Q ss_pred HHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhH-HHHHHHH--HhhcCCCCC
Q 011548 111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMI-IFACIQI--VLSQIPNFH 187 (483)
Q Consensus 111 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~--pl~~~~~l~ 187 (483)
+++|++.+++..+..++.......+............... + .... +.+... +..++++ -+.-.+..+
T Consensus 74 ~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~---~------~~~~-~~~~~~i~~l~i~~~~t~~n~~G~k 143 (507)
T TIGR00910 74 NTLGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKF---P------ALNE-DPIIKFIAALIIFWALAFSQFGGTK 143 (507)
T ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---c------hhcc-CcHHHHHHHHHHHHHHHHHHHhhhH
Confidence 8999999998877777655432222221111112222110 0 0001 111122 1122222 222234455
Q ss_pred chhHHHHHHHHHH-HHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhh
Q 011548 188 KLSWLSILAAVMS-FAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDT 266 (483)
Q Consensus 188 ~l~~~s~~~~~~~-~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~e 266 (483)
....++.++.+.. +...+++++..+.....+.+...+.+.-+ ..+.....+....+..++|+|.|.+......+|
T Consensus 144 ~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~----~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E 219 (507)
T TIGR00910 144 RTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHA----FFPDFSKVGTLVVFVAFIGAYMGVEASASHINE 219 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHh----cCCCcccccHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 5555444432211 11112222222111111111110000000 001111123445555679999999999999999
Q ss_pred cccCCcchhhhHHHHHHHHHHHHHHHHHHHh
Q 011548 267 LKSSPPENKSMKRATAVGVTTTTLFYIMCGV 297 (483)
Q Consensus 267 m~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~ 297 (483)
+|||+ |+++|++..+..++.++|.+..+
T Consensus 220 ~knP~---r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 220 LENPG---RDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred ccCCc---ccccHHHHHHHHHHHHHHHHHHH
Confidence 99996 89999999999999999976444
No 50
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.30 E-value=1e-10 Score=120.25 Aligned_cols=375 Identities=12% Similarity=0.024 Sum_probs=227.8
Q ss_pred CCccccCcHHHHHHHHHHhhhhHhhhH-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcC-CCCcCcHHH
Q 011548 30 GRAKRTGTWVTASAHIITAVIGSGVLS-LAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVT-GKRNYTYMD 107 (483)
Q Consensus 30 ~~~~~~~s~~~~~~~li~~~iG~GiL~-LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~-~~~~~~y~~ 107 (483)
.+.+|+.+.+.-.+.-+++++|+|++- ...+.++.|-..-++..++.+...+.+...+.|...+. |+. | ++..
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~-P~~aG----s~~~ 100 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRF-PVSAG----SFYT 100 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheec-ccccc----ccee
Confidence 466888999999999999999999954 67889999988888899999999999999999976653 432 2 3444
Q ss_pred HHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchh--HHHHHHHHHhhcCCC
Q 011548 108 VVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLM--IIFACIQIVLSQIPN 185 (483)
Q Consensus 108 ~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~pl~~~~~ 185 (483)
.+++..|+-..+++.|-+++.....+.+-+...+.+++.+. . ........+ ..+...|. .+..++++.+.-.+.
T Consensus 101 ya~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~-~-~~~~~~~~~--~~~~~~~~~~fla~~v~in~~gv~~ 176 (554)
T KOG1286|consen 101 YAYRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWT-G-ASLIGILVD--TVNPGGWIPDFLAFILIINLFGVLA 176 (554)
T ss_pred eeeeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-c-ccccccccc--CCCCCccHHHHHHHHHHHHHHHHhh
Confidence 45778999999999999999999999999999999999986 1 000000000 11112222 222223333333444
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCcccccccc-cc-ccCCchhhHhHHHHHHHHHHHhhcCccchHhh
Q 011548 186 FHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT-VG-VDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 263 (483)
Q Consensus 186 l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i 263 (483)
.-+.++...+-.+....-.++..+.......+++.. ++.+.. +. +..-.+..+.+++.++.++.|+|.|...+-..
T Consensus 177 ~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~--~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~ 254 (554)
T KOG1286|consen 177 YGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVK--NWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATT 254 (554)
T ss_pred ccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcC--CCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHH
Confidence 344444333333332222222221112122221110 111111 00 00011222567889999999999999999999
Q ss_pred HhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCC---CCcccccccCc---CCchHHH---HHHHHHHHHH
Q 011548 264 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND---APGNFLTGFGF---YEPFWLV---DFANACIAVH 334 (483)
Q Consensus 264 ~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~---~~~~il~~~~~---~~~~~~~---~~~~~~~~i~ 334 (483)
.+|-|||+ |.+|+++..++..++.+|.+..+.--+.-..+ ..++....-|. .+..+.. .+.+++.++.
T Consensus 255 a~E~kNP~---k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~ 331 (554)
T KOG1286|consen 255 AEEAKNPR---KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIG 331 (554)
T ss_pred HHhccCCc---ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHH
Confidence 99999997 99999999999999999997766544433222 22222111111 0122223 3888999999
Q ss_pred HHHhhhccccchHHHHHHHhhhh-CCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcC-----chHHH
Q 011548 335 LIGAYQVFCQPIFGFVEKWCNKR-WPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFP-----FFNDF 408 (483)
Q Consensus 335 ~~~s~pl~~~p~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p-----~~~~v 408 (483)
++++-.-.+++.-+.+..+.+.. .|+ +..+-++.+.| .. ......+...+.++... .++.+
T Consensus 332 ~~s~~n~~~y~~sR~l~amA~~G~~Pk--~f~~v~~~g~P--------~~---a~~v~~~~~~l~~~~~~~~~~~~f~~L 398 (554)
T KOG1286|consen 332 LLSSLNSSLYAGSRVLYALAKDGLAPK--FFARVDRRGVP--------LV---AVLVSGLFGALAALNFSLGAATVFNWL 398 (554)
T ss_pred HHHHHHHHhHHhHHHHHHHHhcCCcch--HHhhcCCCCCc--------hh---HHHHHHHHHHHHHHHhccccchHHHHH
Confidence 99998888888888887775321 111 11221221223 22 22233333333344332 26888
Q ss_pred HHHhhhhhhhhhhhhhhHHHHHHHh
Q 011548 409 VGLIGAASFWPLTVYFPVEMYIART 433 (483)
Q Consensus 409 ~~~~Gs~~~~~~~~ilP~l~~~~~~ 433 (483)
+++.|--.. +.+.+=++.|++.|
T Consensus 399 ~~~~si~tl--~~w~~i~~~~i~~R 421 (554)
T KOG1286|consen 399 VNLSSIGTL--FAWTLVALSHLRFR 421 (554)
T ss_pred HHHHhHHHH--HHHHHHHHHHeeee
Confidence 888777664 44444445555543
No 51
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.29 E-value=3.3e-11 Score=124.57 Aligned_cols=295 Identities=17% Similarity=0.151 Sum_probs=179.6
Q ss_pred HHHhhhhHhhhH-HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHhCCcceeehhh
Q 011548 45 IITAVIGSGVLS-LAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGL 123 (483)
Q Consensus 45 li~~~iG~GiL~-LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~~i~~~ 123 (483)
-+.+++|+|++. .+.+..+.|.....+..++.+++...+..-+.|..++. |+.| ++...+++.+|+..++.+.+
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~-p~~G----g~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRF-PSAG----GFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhh-cccc----chhhhhhhccCCcCCceeeH
Confidence 467889999865 57788889987778889999999999999999977764 3433 56667788999999999999
Q ss_pred hHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHH
Q 011548 124 AQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 203 (483)
Q Consensus 124 ~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~ 203 (483)
..++.............+..++.+... +. ....+.+.. .+..+..+++..+.. ...+..+..........+..
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~-~~~~i~~~~~~~l~~-~gv~~~~~~~~~~~~i~~~~ 153 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYF---PG--LPSTWVWGI-LIAIIFILLITLLNL-FGVRVSGKIEFILTIIKLIA 153 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccccc---cc--ccccccccc-hhhhhhhhhhhhhhh-hhhhccchHHHHHHHHhhhH
Confidence 988888777777777766666554110 00 000000000 112222222222222 23333333333333333222
Q ss_pred HHHhhhee-eeeecCCCCCcc-----ccc---cccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhcccCCcch
Q 011548 204 SSIGIGLS-IAKVIGDGPHAT-----TLT---GTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPEN 274 (483)
Q Consensus 204 ~~i~i~~~-i~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~~~~~~ 274 (483)
.+..++.. +.....+++.+. +.. .++.+++.+....+.+++.++...+++|.|.+.+....+|.|||+
T Consensus 154 li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~--- 230 (478)
T PF00324_consen 154 LIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPR--- 230 (478)
T ss_pred hhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCch---
Confidence 22222222 211111111111 000 112111111223456889999999999999999999999999997
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCcccc---------cccCcCCchHHHHHHHHHHHHHHHHhhhccccc
Q 011548 275 KSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFL---------TGFGFYEPFWLVDFANACIAVHLIGAYQVFCQP 345 (483)
Q Consensus 275 ~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il---------~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p 345 (483)
|+++|++..+.....++|++.....-...+.+..+... .........+...+.+++...+.+.+..-.++.
T Consensus 231 k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~ 310 (478)
T PF00324_consen 231 KTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYA 310 (478)
T ss_pred hhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhcc
Confidence 89999999999999999998887777766654322111 111111234556677777777777776666666
Q ss_pred hHHHHHHHh
Q 011548 346 IFGFVEKWC 354 (483)
Q Consensus 346 ~~~~l~~~~ 354 (483)
..+.+..+-
T Consensus 311 ~sR~l~ama 319 (478)
T PF00324_consen 311 ASRLLYAMA 319 (478)
T ss_pred cceeehhhh
Confidence 555555443
No 52
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.20 E-value=8e-11 Score=101.34 Aligned_cols=220 Identities=15% Similarity=0.269 Sum_probs=147.3
Q ss_pred HHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCC-------------cCC------
Q 011548 39 VTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDP-------------VTG------ 99 (483)
Q Consensus 39 ~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~-------------~~~------ 99 (483)
..+...+.|-++|+|.|+||.+|+..||++++.++.+.+++++.+....+|+....+. +.+
T Consensus 15 ~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stas 94 (319)
T KOG3832|consen 15 TVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTAS 94 (319)
T ss_pred hhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccC
Confidence 3467788899999999999999999999999999999999999999999885411110 000
Q ss_pred --------------C------------------CcCcHHHHHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHH
Q 011548 100 --------------K------------------RNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAV 147 (483)
Q Consensus 100 --------------~------------------~~~~y~~~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~ 147 (483)
| +..+..+++...|.|.+-.+..++++++++|....|....-....++
T Consensus 95 d~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~i 174 (319)
T KOG3832|consen 95 DDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNI 174 (319)
T ss_pred CCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhh
Confidence 0 11257788888899999999999999999999999987766555444
Q ss_pred Hhh-----ccc-cc---CCCCcccccC-------CcchhHHHHHHH-HHhhcCCCCCchhHHHHHHHHHHHHHHHHhhhe
Q 011548 148 KRS-----NCF-HR---HGHHVKCYTS-------NNPLMIIFACIQ-IVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGL 210 (483)
Q Consensus 148 ~~~-----~~~-~~---~~~~~~~~~~-------~~~~~~~~~~i~-~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~i~~ 210 (483)
.-. -|. .. ..+.+.|+-. ++++++++.+++ +|+.+ -++++.++++++...+..+.....+.+
T Consensus 175 tcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf-~diqktk~iqiltslmrw~~~~~g~~l 253 (319)
T KOG3832|consen 175 TCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTF-ADIQKTKHIQILTSLMRWAAFILGISL 253 (319)
T ss_pred hhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeE-eccccchhHHHHHHHHHHHhccchhhh
Confidence 311 111 01 1112334321 234444444433 34443 368888899988888777554444333
Q ss_pred eeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhcccC
Q 011548 211 SIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSS 270 (483)
Q Consensus 211 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~~ 270 (483)
+-.+.-++.. + .+++...+-++-..++..+|+|.+|...|.....++.+
T Consensus 254 ~tmqaeedaa--------~---a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k 302 (319)
T KOG3832|consen 254 ATMQAEEDAA--------A---AHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTK 302 (319)
T ss_pred hhhhhccccc--------c---cCCccccccccccccchhhHHHHhhccCCCCCCCCeec
Confidence 3222222111 0 23344455566678889999999999999998888744
No 53
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.10 E-value=4.7e-08 Score=95.58 Aligned_cols=283 Identities=10% Similarity=0.028 Sum_probs=184.8
Q ss_pred cCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHhC
Q 011548 35 TGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLG 114 (483)
Q Consensus 35 ~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G 114 (483)
|.|..|....++.+++|+|++.+|....+.+- -|.+..++.++......++..+..++.+ ..+..|..++.+|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p------~~~l~~~~~~~~G 73 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFP------GKTLVEISEKLFG 73 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHhC
Confidence 56889999999999999999999998655431 4455566666666666666666665533 2389999999999
Q ss_pred CcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHH-HHHHHHhhcCCCCCchhHHH
Q 011548 115 GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIF-ACIQIVLSQIPNFHKLSWLS 193 (483)
Q Consensus 115 ~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~pl~~~~~l~~l~~~s 193 (483)
|+.+.+......++........+...+|.++...- .+...+.+.. .++.......++++.+...+
T Consensus 74 k~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l--------------p~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~ 139 (320)
T PF03845_consen 74 KWLGKIINLLYILYFLLISALVLREFSEFIKTYLL--------------PETPIWVIILLFLLVAAYAARKGIEVIARVA 139 (320)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CcCCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999998888888888888888888877641 1112233222 22233333456777777766
Q ss_pred HHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhcccCCcc
Q 011548 194 ILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPE 273 (483)
Q Consensus 194 ~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~~~~~ 273 (483)
.+.....+...+++......+.. ..+.. | -...+..+.+.+.....+.|.+...+.-+...+|+|
T Consensus 140 ~~~~~~~~i~~~~i~~~~~~~~~-----~~~l~--P-----~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~--- 204 (320)
T PF03845_consen 140 EILFPIFLILLLLILLLSIPNID-----WDNLL--P-----VLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK--- 204 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcccCC-----HHHee--C-----cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---
Confidence 55555554444444333332211 11111 1 112334467777888888899999999999999988
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCcccc----cccCcC-Cc---hHHHHHHHHHHHHHHHHhhhccccc
Q 011548 274 NKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFL----TGFGFY-EP---FWLVDFANACIAVHLIGAYQVFCQP 345 (483)
Q Consensus 274 ~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il----~~~~~~-~~---~~~~~~~~~~~~i~~~~s~pl~~~p 345 (483)
++.+|....+......+|...-+.....||.+..++.. ...... -+ +....+.-.........+.-+..+.
T Consensus 205 -~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~ 283 (320)
T PF03845_consen 205 -KKLKKSLLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYA 283 (320)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999888999999965322111 000000 01 1222333444555666666666666
Q ss_pred hHHHHHHHh
Q 011548 346 IFGFVEKWC 354 (483)
Q Consensus 346 ~~~~l~~~~ 354 (483)
..+.+.+.+
T Consensus 284 ~~~~~~~~f 292 (320)
T PF03845_consen 284 ASEGLSQLF 292 (320)
T ss_pred HHHHHHHHh
Confidence 667766666
No 54
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.79 E-value=7.3e-06 Score=82.16 Aligned_cols=263 Identities=10% Similarity=0.045 Sum_probs=135.1
Q ss_pred CCCCCccccCcHHHHH---HHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcC
Q 011548 27 DDDGRAKRTGTWVTAS---AHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNY 103 (483)
Q Consensus 27 ~~~~~~~~~~s~~~~~---~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~ 103 (483)
+-+++.+|.-++|+.+ +.+++..-|. .-++.++....|-..-.-.+++.+........-|.|.+... |..|.
T Consensus 41 gYkqef~R~fs~~s~fg~sFs~~g~~~~i-~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~-PtsGg--- 115 (550)
T KOG1289|consen 41 GYKQELKREFSLFSIFGISFSLMGLLPGI-ATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAM-PTSGG--- 115 (550)
T ss_pred CCchhhhhhhhHHHHHHHHHHHhcchhhh-hhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhC-CCCCc---
Confidence 4445557776665433 2333322211 13355666656655445557777888888888888866553 33221
Q ss_pred cHHHHHHHHhCCcceeehhhhHH----HHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHH
Q 011548 104 TYMDVVRASLGGRSVQLCGLAQY----GNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIV 179 (483)
Q Consensus 104 ~y~~~~~~~~G~~~~~i~~~~~~----~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p 179 (483)
-|-- +..+-+|+.+.++.+..- +.......+--...++.+...... . + +.....+.....+..++.+.
T Consensus 116 Ly~w-aa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l---~-n---p~y~~~~~~~~~v~~ai~~v 187 (550)
T KOG1289|consen 116 LYFW-AAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSL---T-N---PNYEPTNYHQFGVFEAILFV 187 (550)
T ss_pred HHHH-HHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhh---c-C---CCCcccceEeehHHHHHHHH
Confidence 2332 333446666655554332 222221111111222222222211 1 1 11112222223333333333
Q ss_pred hhcCC--CCCchhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCc-cc--cccccccccCCc-hhhHhHHHHHHHHHHHh
Q 011548 180 LSQIP--NFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHA-TT--LTGTTVGVDVSA-SEKVWRAFQAIGDVAFA 253 (483)
Q Consensus 180 l~~~~--~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~-~~--~~~~~~~~~~~~-~~~~~~~~~a~~~~~fa 253 (483)
.+++. .-+.+++++-++....+...++..+.......++.+.+ ++ ...+. +.+. ....|.+..++-..++.
T Consensus 188 ~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~---N~sgw~~~G~afil~f~~~~wt 264 (550)
T KOG1289|consen 188 HGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFN---NYSGWKNNGWAFILGFFNPAWT 264 (550)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeeccc---ccCCCCcchHHHHHhhccceeE
Confidence 33222 23556666666665555444433332222221111111 11 00110 1111 22556777888888999
Q ss_pred hcCccchHhhHhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCC
Q 011548 254 YAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAP 308 (483)
Q Consensus 254 f~~~~~i~~i~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~ 308 (483)
+.|-..-+.+.+|-||++ ++.+|.+..+..+..++=..+-+.-..+-+++..
T Consensus 265 ~sGyDa~~H~aEE~~nAs---k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~ 316 (550)
T KOG1289|consen 265 MSGYDAAAHMAEETKNAS---KAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLD 316 (550)
T ss_pred EeccCchHHHHHHhcchh---hhccHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 999999999999999997 8999999999888887777666666666665433
No 55
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.68 E-value=7.9e-06 Score=83.55 Aligned_cols=261 Identities=17% Similarity=0.105 Sum_probs=139.1
Q ss_pred CCccccCcHHHHHHHHHHhhhhHhhhHHHHHHHh--hChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHH
Q 011548 30 GRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQ--LGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMD 107 (483)
Q Consensus 30 ~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~--~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~ 107 (483)
++++|+.++++-...-.+..+...-+......-. +++..+++..++..++...-..+.... .++.| .++.-
T Consensus 8 p~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~----G~r~G---l~~~v 80 (442)
T TIGR00800 8 KEEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRA----GAKYG---LPFPV 80 (442)
T ss_pred CcccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhh----HHHhC---CCcch
Confidence 3445665655555555555444444444433222 445555555555555444444444443 33333 36777
Q ss_pred HHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCC
Q 011548 108 VVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFH 187 (483)
Q Consensus 108 ~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~ 187 (483)
+.|..||++|..+..++..+...+-........++.+..+++....+.....+..........++...+.+++......+
T Consensus 81 ~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~ 160 (442)
T TIGR00800 81 LSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYK 160 (442)
T ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 88999999999999999999999999999999999988887653211000000000011122344445555555554444
Q ss_pred chhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHH-HhhcCccchHhhHhh
Q 011548 188 KLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVA-FAYAFSTVLVEIQDT 266 (483)
Q Consensus 188 ~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-faf~~~~~i~~i~~e 266 (483)
-.+.....+.........+.+.. ..+....... .+ ..+ ..+.....+.+..++...+ +.-..-.+.+...+.
T Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~g~~~~-~~--~~~---~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy 233 (442)
T TIGR00800 161 IRHLFEWLAVVPPFAAFGMLIWA-LSKAHGKGPL-GE--LTG---TLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRF 233 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCCcc-cc--CCC---CCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhh
Confidence 44445544443333222222111 1111100000 00 000 0011222345555554433 223566789999999
Q ss_pred cccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhh----cCCCCC
Q 011548 267 LKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLA----FGNDAP 308 (483)
Q Consensus 267 m~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~----fg~~~~ 308 (483)
+|++ ++-.+....++.........+|+++-.. +|+...
T Consensus 234 ~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~ 275 (442)
T TIGR00800 234 GKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYW 275 (442)
T ss_pred cCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 9987 5555667777777777777777777765 776543
No 56
>PRK11375 allantoin permease; Provisional
Probab=98.66 E-value=5.5e-05 Score=77.93 Aligned_cols=271 Identities=13% Similarity=0.050 Sum_probs=138.8
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHhCCcceeehhhhHH-HHhhhhHHHHHHHhhh
Q 011548 64 LGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQY-GNLIGVTIGYTITASI 142 (483)
Q Consensus 64 ~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~~i~~~~~~-~~~~g~~~~y~i~~~~ 142 (483)
+++..+++..++..++...-..+...... +. ..++.-+.|..||++|..+..+... +..++-........++
T Consensus 57 Ls~~~ai~ai~lG~~i~~~~~~l~g~~G~----~~---Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~ 129 (484)
T PRK11375 57 LSTFSIMLAIILSAFFIAAVMVLNGAAGS----KY---GVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSL 129 (484)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccccc----cc---CCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566665555555544444444332 22 2478889999999999988888874 5666777777777888
Q ss_pred hHHHHHhhcccc--cCCCC-cccccC--CcchhHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhheeeeeecC
Q 011548 143 SMVAVKRSNCFH--RHGHH-VKCYTS--NNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIG 217 (483)
Q Consensus 143 ~~~~~~~~~~~~--~~~~~-~~~~~~--~~~~~~~~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~ 217 (483)
.+..++.....+ ...++ +....+ .....+++.++..++.+ ...+.+++++.++........+.+.+..+.+.
T Consensus 130 al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~-- 206 (484)
T PRK11375 130 ALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLV-- 206 (484)
T ss_pred HHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 877766432111 11110 000111 11222344455555544 44677777777766665543333332323222
Q ss_pred CCCCccccccccccccCCchhhHhHHHHHHHHHHHhhc-CccchHhhHhhcccCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 011548 218 DGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYA-FSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCG 296 (483)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~-~~~~i~~i~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g 296 (483)
+ ..+.....+.+ +.......+.+..++...+=++. ...+.|...|..|++ |+-.+....+..+...+...+|
T Consensus 207 g--~~~~~~~~~~~-~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~----~~~~~~~~~g~~i~~~~~~~~g 279 (484)
T PRK11375 207 G--IGPIFDYIPSG-IQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSF----RAQALGQTLGLVVAYILFAVAS 279 (484)
T ss_pred C--CchhhccCccc-ccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCCh----hhhHHHHHHHHHHHHHHHHHHH
Confidence 1 01000000000 00111123445555544444444 456899999999987 6666666667766666554444
Q ss_pred hHH----HhhcCCCCCc--ccccccCcCCchHHHHHHHHHHHHHHHHhh-hccccchHHHHHHHh
Q 011548 297 VMG----YLAFGNDAPG--NFLTGFGFYEPFWLVDFANACIAVHLIGAY-QVFCQPIFGFVEKWC 354 (483)
Q Consensus 297 ~~g----y~~fg~~~~~--~il~~~~~~~~~~~~~~~~~~~~i~~~~s~-pl~~~p~~~~l~~~~ 354 (483)
++. ...+|+...| +++..+ ++.....+.-+.++++..++- ..+.++.-..+..++
T Consensus 280 ~~~~~~a~~~~g~~~~dp~~i~~~~---~~~~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l~~l~ 341 (484)
T PRK11375 280 VCIIAGASIHYGADTWNVLDIVQRW---DSLFASFFAVLVILMTTISTNATGNIIPAGYQIAALA 341 (484)
T ss_pred HHHHHHHHHHhCCCcCCHHHHHHHh---cchHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHhC
Confidence 443 4466654333 233322 122233334444555555542 346666655555554
No 57
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.55 E-value=3e-05 Score=72.95 Aligned_cols=137 Identities=9% Similarity=0.064 Sum_probs=97.1
Q ss_pred HHHHHHHHHhhhhHhhhH---HHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHhCC
Q 011548 39 VTASAHIITAVIGSGVLS---LAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGG 115 (483)
Q Consensus 39 ~~~~~~li~~~iG~GiL~---LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~ 115 (483)
.+-.+..+.+++|+|.-+ +=.-|.+-|+. |+...++++++-..++..+.+..++.+ ..+|+|..+..+||
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~------a~~y~~~~~~v~~~ 78 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFN------ATSYREILKYVSGP 78 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhc------ccchHHHHHHHhhH
Confidence 345667778999999765 22335566664 677778888888888888888777665 45999999999999
Q ss_pred cceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchhHHHHH
Q 011548 116 RSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSIL 195 (483)
Q Consensus 116 ~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~~~s~~ 195 (483)
+...+.|+.+.+.+++.++.-+...+..+.+-. ..+.++..++...++....++++.+++-.++.+
T Consensus 79 ~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~--------------~lP~wiGali~i~~v~i~lfl~~vegi~tvn~i 144 (349)
T COG3949 79 KFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMF--------------GLPYWIGALIIILLVLILLFLGRVEGIITVNGI 144 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHh--------------CccHHHHHHHHHHHHHHHHHHhcccceeeehee
Confidence 999999999999999999988887777766654 233333334444444444455556665544433
Q ss_pred H
Q 011548 196 A 196 (483)
Q Consensus 196 ~ 196 (483)
-
T Consensus 145 I 145 (349)
T COG3949 145 I 145 (349)
T ss_pred H
Confidence 3
No 58
>PRK12488 acetate permease; Provisional
Probab=98.49 E-value=0.00089 Score=70.34 Aligned_cols=153 Identities=14% Similarity=0.155 Sum_probs=98.2
Q ss_pred cccCcHHHHHHHHHHhhhhHhh-hHHHHHHHhhChhHHHHHHHHHHHHHHH-HHHHHHhcccCCCCcCCCCcCcHHHHHH
Q 011548 33 KRTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFITYY-TSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (483)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~Gi-L~LP~~f~~~G~~~gii~li~~~~~~~~-t~~~l~~~~~~~~~~~~~~~~~y~~~~~ 110 (483)
.|+.+++...+.+..+.++++. ++.|-.....|+.. . ...+...+.+. ...++.+-.++.+ .+|..|.-+
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~-~-~~~~g~~~g~~~~~~~~a~~lr~~g------~~T~~d~l~ 137 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG-L-LYALGVLAGWPIILFLIAERLRNLG------KYTFADVVS 137 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH-H-HHHHHHHHHHHHHHHHHHHHHHHCC------CcchHHHHH
Confidence 4678888888888888777765 77898777788642 2 11111122221 1233444444333 469999988
Q ss_pred HHhC-CcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCch
Q 011548 111 ASLG-GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (483)
Q Consensus 111 ~~~G-~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l 189 (483)
+-|| |+.+.+..+...+.........+...+..++.+.. ++....+++..++....+..-.++..
T Consensus 138 ~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------------i~~~~~iii~~~i~~~Yt~~GGm~av 203 (549)
T PRK12488 138 YRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------------ISYLYAVVIVGALMVLYVTFGGMLAT 203 (549)
T ss_pred HHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhccchhHH
Confidence 8887 55777777777777777777777777777776652 22334445555566666667788888
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 011548 190 SWLSILAAVMSFAYSSIG 207 (483)
Q Consensus 190 ~~~s~~~~~~~~~~~~i~ 207 (483)
.+...+-.+.++...+++
T Consensus 204 ~~td~iQ~~im~~~~i~~ 221 (549)
T PRK12488 204 TWVQIIKAVLLLSGTSFM 221 (549)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888766665544443
No 59
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.42 E-value=0.00077 Score=69.69 Aligned_cols=156 Identities=10% Similarity=0.094 Sum_probs=96.1
Q ss_pred cccCcHHHHHHHHHHhhhhHhh-hHHHHHHHhhChhHHHHHHH--HHHHHH-HHHHHHHHhcccCCCCcCCCCcCcHHHH
Q 011548 33 KRTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLM--AFSFIT-YYTSTLLSDCYRSPDPVTGKRNYTYMDV 108 (483)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~Gi-L~LP~~f~~~G~~~gii~li--~~~~~~-~~t~~~l~~~~~~~~~~~~~~~~~y~~~ 108 (483)
.|+.+++.....+..+.+|++. ++.|-...+.|+........ ..+.+. .+-...+.+..++.+ ..|..|.
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~T~~e~ 112 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYN------AITINDV 112 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CccHHHH
Confidence 4778888899999988888776 56787766777632111110 011111 111112222223333 5699999
Q ss_pred HHHHhCCcc-eeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCC
Q 011548 109 VRASLGGRS-VQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFH 187 (483)
Q Consensus 109 ~~~~~G~~~-~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~ 187 (483)
-++-||++. +.+..+...+..++...+.+...+..++.+.+ .+....+++..+++......-.++
T Consensus 113 l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GG~~ 178 (471)
T TIGR02119 113 LKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------------LSYLTALFIFSSSVLIYTTFGGFR 178 (471)
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhhHH
Confidence 999999665 56777777777777777777777777777652 233344455555566666777788
Q ss_pred chhHHHHHHHHHHHHHHHHhh
Q 011548 188 KLSWLSILAAVMSFAYSSIGI 208 (483)
Q Consensus 188 ~l~~~s~~~~~~~~~~~~i~i 208 (483)
...+...+-.+..+...+++.
T Consensus 179 av~~td~iQ~~v~~~~~~~~~ 199 (471)
T TIGR02119 179 AVALTDAIQGIVMFTGTTILL 199 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888777665555444433
No 60
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.40 E-value=0.00012 Score=74.18 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=97.4
Q ss_pred ccCcHHHHHHHHHHhhhhHhh-hHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHH
Q 011548 34 RTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS 112 (483)
Q Consensus 34 ~~~s~~~~~~~li~~~iG~Gi-L~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~ 112 (483)
|+.+++...+.+..+.+|++. ++.|....+.|+. +....+...+.......+..+..++.+ ..|..|..++-
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~T~~e~l~~R 75 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFINNG------AYTMPEYLEKR 75 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcC------CCchhHHHHHH
Confidence 567778888888877776655 6788777777753 222222222223334444444444322 56999999999
Q ss_pred hCCc-ceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchhH
Q 011548 113 LGGR-SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSW 191 (483)
Q Consensus 113 ~G~~-~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~~ 191 (483)
||++ .+.+..+...+..+....+.+...+..++.+.+ ++.....++.+++.......-.++...+
T Consensus 76 yg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------------i~~~~~~ii~~~i~~~Yt~~GG~~av~~ 141 (407)
T TIGR00813 76 FGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------------LDLYLSLLLLGAITILYTVFGGLKAVVW 141 (407)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------chHHHHHHHHHHHHHHHHHHcchHHHHH
Confidence 9984 666666777777888888888888888877652 2223344455555555666777888888
Q ss_pred HHHHHHHHHHHHHHH
Q 011548 192 LSILAAVMSFAYSSI 206 (483)
Q Consensus 192 ~s~~~~~~~~~~~~i 206 (483)
...+-.+.++...++
T Consensus 142 Td~iQ~~i~~~~~i~ 156 (407)
T TIGR00813 142 TDTIQAVIMILGTFI 156 (407)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887776665544333
No 61
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.40 E-value=0.00082 Score=69.65 Aligned_cols=155 Identities=14% Similarity=0.066 Sum_probs=90.7
Q ss_pred cccCcHHHHHHHHHHhhhhHh-hhHHHHHHHhhChhHHHHHH---HHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHH
Q 011548 33 KRTGTWVTASAHIITAVIGSG-VLSLAWAIAQLGWVAGPAVL---MAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDV 108 (483)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~G-iL~LP~~f~~~G~~~gii~l---i~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~ 108 (483)
.|+.+++...+.+..+.+|++ .++.|-...+.|+....... ....+...+-+..+.+..++.+ ..|..|+
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~------~~T~~e~ 113 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN------AVTLNDM 113 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CccHHHH
Confidence 467778888888888777764 46678666666753211111 1111111122222333334333 5699999
Q ss_pred HHHHhCCcc-eeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCC
Q 011548 109 VRASLGGRS-VQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFH 187 (483)
Q Consensus 109 ~~~~~G~~~-~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~ 187 (483)
.++-||++. +.+..+...+..+....+.+...+..++.+.+ ++.....++..+++...+..-.++
T Consensus 114 l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GGl~ 179 (483)
T PRK09442 114 LRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------------ISYETGLLIFGITVALYTAFGGFR 179 (483)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhccHH
Confidence 999998764 44555555555566666667777777776652 223344455555566667777888
Q ss_pred chhHHHHHHHHHHHHHHHHh
Q 011548 188 KLSWLSILAAVMSFAYSSIG 207 (483)
Q Consensus 188 ~l~~~s~~~~~~~~~~~~i~ 207 (483)
...+...+-.+..+...+++
T Consensus 180 av~~TD~iQ~~i~~~~~~vi 199 (483)
T PRK09442 180 AVVLTDALQGIVMLVGTVIL 199 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888877766555544333
No 62
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.34 E-value=0.00064 Score=68.16 Aligned_cols=226 Identities=14% Similarity=0.115 Sum_probs=133.5
Q ss_pred HHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHhCCcce
Q 011548 39 VTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSV 118 (483)
Q Consensus 39 ~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~ 118 (483)
....+++.+-..|+.... +++..+++..++..++...-..+.... +++.| .++.-+.|..||++|.
T Consensus 8 ~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~----G~~~G---l~~~v~sR~~FG~~Gs 73 (386)
T TIGR02358 8 FGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVI----GADTG---LSAMGSLKLSLGSKGS 73 (386)
T ss_pred HHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHh----hcccC---cCHHHHHHHHHccchh
Confidence 344455555555543211 555566666666655555544455544 33332 3788899999999999
Q ss_pred eehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 011548 119 QLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAV 198 (483)
Q Consensus 119 ~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~~~s~~~~~ 198 (483)
.+..+...+...|--.......++.+..+.+... +. .+...+.++..++..+.+. ...+.++++..++..
T Consensus 74 ~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~-~~--------~~~~~~~~i~~~l~~~~~~-~G~~~i~~~~~~~~~ 143 (386)
T TIGR02358 74 VLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLF-GE--------ESPMLWILIVGILVTLWLL-SGPLAFVWLNNWSVW 143 (386)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC--------CchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999999999888999999998875311 00 0111233333443444443 346777777777777
Q ss_pred HHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHH-hhcCccchHhhHhhcccCCcchhhh
Q 011548 199 MSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAF-AYAFSTVLVEIQDTLKSSPPENKSM 277 (483)
Q Consensus 199 ~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~f-af~~~~~i~~i~~em~~~~~~~~~~ 277 (483)
......+........+... . .... + +... .+..++...+- .-......++..|..|++ |+.
T Consensus 144 ~~~i~~~~~~~~~~~~~~~----~-~~~~-~-----~~~~---s~~~~~~~~~~~~~swa~~~~DysRy~k~~----~~~ 205 (386)
T TIGR02358 144 LLLIATLWLLVVVFSKADL----S-ELWN-R-----AGDM---SFAVAVELVIAMPLSWLPLIADYTRFARNP----RHV 205 (386)
T ss_pred HHHHHHHHHHHHHHhccch----h-hhcC-C-----CCCc---cHHHHHHHHHHHHHHHHHHccchhhhcCCC----cce
Confidence 6665544433222222110 0 0000 0 0011 22222222111 113344588999998876 778
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhcCCC
Q 011548 278 KRATAVGVTTTTLFYIMCGVMGYLAFGND 306 (483)
Q Consensus 278 ~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~ 306 (483)
-+....+..+...+-.++|.....+.++.
T Consensus 206 ~~~~~~G~~i~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 206 FLGTVLGYFIGSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88888888888888888888887776654
No 63
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.32 E-value=0.0021 Score=67.54 Aligned_cols=152 Identities=12% Similarity=0.108 Sum_probs=91.6
Q ss_pred cccCcHHHHHHHHHHhhhh-HhhhHHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHhcccCCCCcCCCCcCcHHHHHH
Q 011548 33 KRTGTWVTASAHIITAVIG-SGVLSLAWAIAQLGWVAGPAVLMAFSFITY-YTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (483)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG-~GiL~LP~~f~~~G~~~gii~li~~~~~~~-~t~~~l~~~~~~~~~~~~~~~~~y~~~~~ 110 (483)
.|+.+++...+.+..+.++ ...++.|-...+.|+.. .... +...+.+ ....++.+-.|+.+ .+|..|..+
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~-~~~~-~g~~~~~~i~~~~~a~~lrr~g------~~T~~d~l~ 137 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDG-LIYS-LGFLVGWPIILFLIAERLRNLG------RYTFADVAS 137 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-HHHH-HHHHHHHHHHHHHHHHHHHHcC------CccHHHHHH
Confidence 4667777777777777555 45688997777778642 2211 1122222 22334455444433 469999988
Q ss_pred HHhCC-cceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCch
Q 011548 111 ASLGG-RSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (483)
Q Consensus 111 ~~~G~-~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l 189 (483)
+-||. ..+.+..+...+.........+...+..++.+++ ++....+++..+++..-...-.++..
T Consensus 138 ~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g--------------i~~~~~iii~~~i~~~Yt~~GGm~av 203 (549)
T TIGR02711 138 YRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG--------------LNYHVAVVLVGILMVMYVLFGGMLAT 203 (549)
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 88874 4566666666666666666777777777766652 22333445555555555666778777
Q ss_pred hHHHHHHHHHHHHHHHH
Q 011548 190 SWLSILAAVMSFAYSSI 206 (483)
Q Consensus 190 ~~~s~~~~~~~~~~~~i 206 (483)
.+...+-.+.++...++
T Consensus 204 ~~td~iQ~~im~~g~i~ 220 (549)
T TIGR02711 204 TWVQIIKAVLLLFGATF 220 (549)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88887776655543333
No 64
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.32 E-value=1.8e-05 Score=80.10 Aligned_cols=156 Identities=10% Similarity=0.134 Sum_probs=89.5
Q ss_pred cccCcHHHHHHHHHHhhhhHh-hhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHH
Q 011548 33 KRTGTWVTASAHIITAVIGSG-VLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (483)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~G-iL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~ 111 (483)
.|+.+++...+.+..+.+|++ +++.|-...+.|+.. ....+............+.+-.++.+ ..|..|.-++
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~------~~T~~e~~~~ 77 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRRSG------AVTIPEYLEK 77 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHHTT--------SHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcccc------hhhhhhhhhh
Confidence 366778888888888777765 577888877888753 32333333333344445555555333 5699999999
Q ss_pred HhCCcc--eeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCch
Q 011548 112 SLGGRS--VQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (483)
Q Consensus 112 ~~G~~~--~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l 189 (483)
-+|++. +.+..+...+.........+...+..++.+.. ++.....++..++.......-.++..
T Consensus 78 Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g--------------i~~~~~~~i~~~i~~iYt~~GGl~av 143 (406)
T PF00474_consen 78 RYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG--------------IPYNTAILIVGVIVIIYTFFGGLRAV 143 (406)
T ss_dssp HT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------------HHHHHHHHHHHHHHTTCTT-----
T ss_pred hcCCchhhhhhcccccchhhhhhhhccccccccchhhccc--------------hhhhHHHHHHHHHHHHhhhhhhHhhh
Confidence 999998 55555556666667777777777777776652 22334445555566666677777777
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q 011548 190 SWLSILAAVMSFAYSSIGIG 209 (483)
Q Consensus 190 ~~~s~~~~~~~~~~~~i~i~ 209 (483)
.+...+-.+..++..+++..
T Consensus 144 ~~td~iQ~~i~~~~~~~~~~ 163 (406)
T PF00474_consen 144 AWTDFIQGVIMIIGAIVVLI 163 (406)
T ss_dssp -SHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 77777776655544444433
No 65
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.32 E-value=0.0016 Score=67.44 Aligned_cols=303 Identities=12% Similarity=-0.002 Sum_probs=151.6
Q ss_pred cccCcHHHHHHHHHHhhhh-HhhhHHHHHHHhhChhHHHHHHH---HHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHH
Q 011548 33 KRTGTWVTASAHIITAVIG-SGVLSLAWAIAQLGWVAGPAVLM---AFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDV 108 (483)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG-~GiL~LP~~f~~~G~~~gii~li---~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~ 108 (483)
.|+.+.+-.......+.++ .-.+++|-.....|+....+..- ...+.-.+....+.+..++.+ ..|..|.
T Consensus 37 gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~------~~T~~d~ 110 (493)
T COG0591 37 GRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARG------ATTIPDF 110 (493)
T ss_pred CCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC------CccHHHH
Confidence 3555555666666666666 77889999888888654333333 222222233333333332211 5699999
Q ss_pred HHHHhC-CcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCC
Q 011548 109 VRASLG-GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFH 187 (483)
Q Consensus 109 ~~~~~G-~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~ 187 (483)
-++-|| |+.+.+..+...+.....+...+...+..++.... .+.....++.+.++..-...-.++
T Consensus 111 l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--------------i~~~~~~~~~~~~v~~Yt~~gG~~ 176 (493)
T COG0591 111 LEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--------------ISYVTGILIGALIVALYTFLGGLR 176 (493)
T ss_pred HHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------------CCHHHHHHHHHHHHHHHHHHcChh
Confidence 999999 88899999999999999999999999988855442 122233344444555555555666
Q ss_pred chhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccc-ccccccc--c-cCCchhhHh--HHHHHHHHHHHhhcCccchH
Q 011548 188 KLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATT-LTGTTVG--V-DVSASEKVW--RAFQAIGDVAFAYAFSTVLV 261 (483)
Q Consensus 188 ~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~-~~~~~~~--~-~~~~~~~~~--~~~~a~~~~~faf~~~~~i~ 261 (483)
...+...+-...+...+..+........ .+-..... .+..... . ..+.....+ ......+..++.|.+++.+.
T Consensus 177 av~~Td~iqg~im~i~~~~~~i~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 255 (493)
T COG0591 177 AVVWTDFIQGLIMLIALIVIPILVLILF-GGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAWGTLFLGYFGQPHIL 255 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccHHHHHHHHHhcccccccCcccccchHHHHHHHHHHHHHHhhhhcCchhh
Confidence 6666666655544443333322222210 00000000 0000000 0 000011111 12233444445555555444
Q ss_pred hhHhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCC--------cccccccC-cCCchHHHHHHHHHHH
Q 011548 262 EIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAP--------GNFLTGFG-FYEPFWLVDFANACIA 332 (483)
Q Consensus 262 ~i~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~--------~~il~~~~-~~~~~~~~~~~~~~~~ 332 (483)
+-.=..++.++.+++.++........+...=.++|+.+...+.+..+ +.+...+- ..-|.|...+.-...+
T Consensus 256 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~g~~~~ail 335 (493)
T COG0591 256 PRFMAAKSIKSLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLILALFPPWIAGLLLAAIL 335 (493)
T ss_pred hhhhhhccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 43333444321124555555555555555545666666666554322 11111110 0124566665555555
Q ss_pred HHHHHhhhccccchHHHH-HHHhhh
Q 011548 333 VHLIGAYQVFCQPIFGFV-EKWCNK 356 (483)
Q Consensus 333 i~~~~s~pl~~~p~~~~l-~~~~~~ 356 (483)
..++.+.-.+.......+ +|..++
T Consensus 336 aAvmSt~ss~ll~~ss~~t~Diyk~ 360 (493)
T COG0591 336 AAVMSTASSQLLVASSAITRDIYKR 360 (493)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 555555544444333333 444443
No 66
>PRK09395 actP acetate permease; Provisional
Probab=98.27 E-value=0.0039 Score=65.67 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=92.1
Q ss_pred cccCcHHHHHHHHHHhhhhHhh-hHHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHhcccCCCCcCCCCcCcHHHHHH
Q 011548 33 KRTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFIT-YYTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (483)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~Gi-L~LP~~f~~~G~~~gii~li~~~~~~-~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~ 110 (483)
.|+.++|...+.+..+.+|++. ++.|-.....|+.. ... .+...+. .....++.+-.|+.+ .+|+.|..+
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~-~~~~~~g~~~~~~~~~~~~r~~g------~~T~~d~l~ 139 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIY-SIGFLVGWPIILFLIAERLRNLG------KYTFADVAS 139 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHH-HHHHHHHHHHHHHHHHHHHhhCC------CccHHHHHH
Confidence 4677788888888877777655 77887777778643 211 1111121 122233444444433 469999999
Q ss_pred HHhCC-cceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCch
Q 011548 111 ASLGG-RSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (483)
Q Consensus 111 ~~~G~-~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l 189 (483)
+-||+ +.+.+..+...+.......+.+...+..++.+.+ ++.....++..++.......-.++..
T Consensus 140 ~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------------i~~~~~ili~~~i~~iYt~~GGm~av 205 (551)
T PRK09395 140 YRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------------LNYHVAVVLVGVLMMVYVLFGGMLAT 205 (551)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 88984 4677777666666666666666666666666542 22334445555556666667778887
Q ss_pred hHHHHHHHHHHHHHHH
Q 011548 190 SWLSILAAVMSFAYSS 205 (483)
Q Consensus 190 ~~~s~~~~~~~~~~~~ 205 (483)
.+...+-.+.++...+
T Consensus 206 ~~TD~iQ~iim~~g~i 221 (551)
T PRK09395 206 TWVQIIKAVLLLSGAT 221 (551)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777655544333
No 67
>PRK11017 codB cytosine permease; Provisional
Probab=98.10 E-value=0.0022 Score=64.80 Aligned_cols=206 Identities=17% Similarity=0.092 Sum_probs=108.1
Q ss_pred hhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhh
Q 011548 63 QLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASI 142 (483)
Q Consensus 63 ~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~ 142 (483)
.+++..+++..++..++...-..+.... +++.| .++.-+.|..||.+|..+..+...+...+-........++
T Consensus 38 GLs~~~ai~aiilG~~i~~~~~~l~~~~----G~k~G---~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~ 110 (404)
T PRK11017 38 GLSFVDFLLAVLIGNLLLGIYTAALGYI----GAKTG---LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAI 110 (404)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH----HhccC---cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3555566666666555544444444443 33322 4788899999999999988888777777766666666666
Q ss_pred hHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCc
Q 011548 143 SMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHA 222 (483)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~ 222 (483)
.++...+ .+...+.++..++..+.+... .+.+++++..+........+......+.+. +..
T Consensus 111 ~l~~~~~--------------~~~~~~~~i~~~l~~~~~~~G-~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~---~g~- 171 (404)
T PRK11017 111 PVVKATG--------------LDINLLIVLSGLLMTVTAYFG-ISALTILSRIAVPAIALLGGYSVWLAVNDV---GGL- 171 (404)
T ss_pred HHHHHhC--------------CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---Cch-
Confidence 5554431 111124444555555554432 344555555544433332222221111111 100
Q ss_pred cccccccccccCCchhhHhHHHHHHHHHHHh-hcCccchHhhHhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHh
Q 011548 223 TTLTGTTVGVDVSASEKVWRAFQAIGDVAFA-YAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYL 301 (483)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~fa-f~~~~~i~~i~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~ 301 (483)
++....+ .... ..+..++...+=. -....+.+...|..|++ |+.......+..+...+-..+|...-.
T Consensus 172 ~~~~~~~----~~~~---~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~----~~~~~~~~lg~~i~~~~~~~~G~~~a~ 240 (404)
T PRK11017 172 DGLKAIV----PAEP---LDFSAALTLVVGSFISGGTLTADFVRFGRSA----KIAVLATMVAFFLGNSLMFIFGAAGAA 240 (404)
T ss_pred hhhhcCC----CCCc---ccHHHHHHHHHHHHHHhHhcCCChHhhccCc----cceeehhHHHHHHHHHHHHHHHHHHHH
Confidence 0110000 0001 1333333332222 24567888999998876 554456666666666666667766666
Q ss_pred hcCC
Q 011548 302 AFGN 305 (483)
Q Consensus 302 ~fg~ 305 (483)
+.|+
T Consensus 241 ~~~~ 244 (404)
T PRK11017 241 VYGQ 244 (404)
T ss_pred HcCC
Confidence 6664
No 68
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.07 E-value=0.0034 Score=62.79 Aligned_cols=272 Identities=16% Similarity=0.109 Sum_probs=143.0
Q ss_pred HHHHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCC
Q 011548 106 MDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPN 185 (483)
Q Consensus 106 ~~~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~ 185 (483)
..++|..||.+|.++..+.+.+.+.|-...-.+..++...... ..+..+++++..+++...+.. .
T Consensus 84 mi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~--------------~~~~~~~ili~g~l~~l~~if-G 148 (442)
T COG1457 84 MILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGT--------------GLPVWAGILIIGVLMTLVTIF-G 148 (442)
T ss_pred heeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCC--------------CCcHHHHHHHHHHHHHHHHHH-h
Confidence 3467889999999999999999999999988888888721110 223345555555555544443 2
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhh-cCccchHhhH
Q 011548 186 FHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAY-AFSTVLVEIQ 264 (483)
Q Consensus 186 l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf-~~~~~i~~i~ 264 (483)
.+.++.++..+....+......+...... .+........ .+.+..++..+++..+-.+ ..-+......
T Consensus 149 ~r~l~~l~~~a~~~~~~lf~~l~~~~~~~---~~~~~~~~~~--------~~~~~~~fl~a~slv~g~~~sw~~~~aDys 217 (442)
T COG1457 149 YRALHKLERIAVPLLLLLFLYLLALLFRS---KGGLDALWVK--------GPTSPLSFLSALSLVIGSFASWGPYAADYS 217 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccccceeecc--------CCCcchhHHHHHHHHHHHHHhhhhhhhhhh
Confidence 34444444444443333222222221110 1111111000 0111123444443333333 5667788888
Q ss_pred hhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCC-CcccccccCcCCchHHHHHHHHHHHHHHHHhhhccc
Q 011548 265 DTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA-PGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFC 343 (483)
Q Consensus 265 ~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~-~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~ 343 (483)
+.+|+|+. +|.-.....+......+-+.+|.+...+-|+.. ..+.....+ + +...+.+..++...++--..+
T Consensus 218 Ry~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G---~--~g~~~~lil~l~~~ttN~~nl 290 (442)
T COG1457 218 RYAPSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLG---G--FGLPAILILVLGTVTTNANNL 290 (442)
T ss_pred hhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhcc---c--HHHHHHHHHHHHHHhcCcHHH
Confidence 99998832 356666667777777777888998888888776 334444432 1 334444445555555544444
Q ss_pred cchHHHHHHHhhhhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHH--HcCchHHHHHHhhhhhhhhhh
Q 011548 344 QPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAM--IFPFFNDFVGLIGAASFWPLT 421 (483)
Q Consensus 344 ~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~p~~~~v~~~~Gs~~~~~~~ 421 (483)
++..-.+.+...+. + | ..+...........+.+.. +..+++.++.++|+... ++.
T Consensus 291 Ysa~ls~~~i~~~l-~------k---------------~~~~v~~~v~igt~la~~~~~f~~~f~~Fl~~i~~~i~-P~~ 347 (442)
T COG1457 291 YSAGLSFANIIPKL-S------K---------------VTRVVIAGVGIGTLLALAGPFFYNFFENFLLLLGYFIP-PWG 347 (442)
T ss_pred HHHHHHHHHhhhhh-h------h---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 44333333322110 0 0 2222222211222222222 46679999998888874 444
Q ss_pred hhhhHHHHHHHh
Q 011548 422 VYFPVEMYIART 433 (483)
Q Consensus 422 ~ilP~l~~~~~~ 433 (483)
.+.=+=+++.+|
T Consensus 348 ~I~iad~~~~rr 359 (442)
T COG1457 348 GVMIADYFIVRR 359 (442)
T ss_pred HHHHHHHHHHhc
Confidence 444454455443
No 69
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.00 E-value=0.016 Score=60.24 Aligned_cols=156 Identities=12% Similarity=0.074 Sum_probs=85.5
Q ss_pred cccCcHHHHHHHHHHhhhhHh-hhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCC-cCCCCcCcHHHHHH
Q 011548 33 KRTGTWVTASAHIITAVIGSG-VLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDP-VTGKRNYTYMDVVR 110 (483)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~G-iL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~-~~~~~~~~y~~~~~ 110 (483)
.|+.+++...+.+..+.+++. .++.|-...+.|+.. ....+...+........+.+-.++..+ +.+ ..|..|.-+
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~--~~T~~e~l~ 111 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAHN--SITLPDFFE 111 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC--CccHHHHHH
Confidence 467788888888887777655 466887666778643 211111112222233344443332111 111 568999999
Q ss_pred HHhCCcceeeh---hhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCC
Q 011548 111 ASLGGRSVQLC---GLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFH 187 (483)
Q Consensus 111 ~~~G~~~~~i~---~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~ 187 (483)
+-||++.+.+. .+...+.........+...+..++.+.+ .+.....++..++...-...-.++
T Consensus 112 ~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------------i~~~~~iii~~~i~~~Yt~~GGl~ 177 (487)
T TIGR02121 112 NRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------------LDYKTGLLIGALIIVIYTFFGGFL 177 (487)
T ss_pred HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------ccHHHHHHHHHHHHHHHHHhhhHH
Confidence 99997655443 3233333333444555555555555542 222234445555555556667778
Q ss_pred chhHHHHHHHHHHHHHHH
Q 011548 188 KLSWLSILAAVMSFAYSS 205 (483)
Q Consensus 188 ~l~~~s~~~~~~~~~~~~ 205 (483)
...+...+-.+.++..++
T Consensus 178 av~~TD~iQ~~i~~~~~~ 195 (487)
T TIGR02121 178 AVSWTDFVQGLLMFFALV 195 (487)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 877877777665554433
No 70
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.98 E-value=0.017 Score=58.21 Aligned_cols=206 Identities=15% Similarity=0.088 Sum_probs=105.5
Q ss_pred cCcHHHHHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCc-ccccCCcchhHHHHHHHH--
Q 011548 102 NYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHV-KCYTSNNPLMIIFACIQI-- 178 (483)
Q Consensus 102 ~~~y~~~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~-- 178 (483)
...|....|..||-+|..+-.+.=.+.-..--....-..+..++.++.....+...... ....+-.....+..++..
T Consensus 102 gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l 181 (497)
T COG1953 102 GIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVL 181 (497)
T ss_pred CCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHH
Confidence 35899999999999887654443222222222223344555555555443222111111 101222222233333322
Q ss_pred -HhhcCCCCCchhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhh-cC
Q 011548 179 -VLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAY-AF 256 (483)
Q Consensus 179 -pl~~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf-~~ 256 (483)
.+...+.++++|++...+..++.+.+..+++..+.+...... ..+. + +...+.....|.++.++...+--| ..
T Consensus 182 ~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~-~~~~---p-~~~~~~~~~~w~~~~~~~~~v~~~Atl 256 (497)
T COG1953 182 QLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSI-LGEL---P-AGTVSGSNSSWAFLAGIAAWVGFWATL 256 (497)
T ss_pred HHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCc-cccC---C-CCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 233456688888888777777766555554444433322111 1111 1 001122333344544443333333 46
Q ss_pred ccchHhhHhhcccCCcchhhhHHHHHHHHHHHHHHHH----HHHhHHHhhcCCC--CCcccccccC
Q 011548 257 STVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYI----MCGVMGYLAFGND--APGNFLTGFG 316 (483)
Q Consensus 257 ~~~i~~i~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~----~~g~~gy~~fg~~--~~~~il~~~~ 316 (483)
..|+|...+.-|++ +.-.+--.++..+.+.+.- ..+..++..||+. .+.++...++
T Consensus 257 ~lN~~DFsRfa~s~----~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~ 318 (497)
T COG1953 257 ALNIPDFTRFAKSQ----KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFL 318 (497)
T ss_pred hcCCchhhcccCCh----hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhc
Confidence 67899999998887 4444444555555555554 4455677799988 4457787775
No 71
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.97 E-value=0.0086 Score=62.35 Aligned_cols=157 Identities=12% Similarity=0.023 Sum_probs=86.7
Q ss_pred cccCcHHHHHHHHHHhhhhHhh-hHHHHHHHhhChhHHHHHHHHHHHHH-HHHHHHHHhcccCCCCcCCCCcCcHHHHHH
Q 011548 33 KRTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFIT-YYTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (483)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~Gi-L~LP~~f~~~G~~~gii~li~~~~~~-~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~ 110 (483)
.|+.+++...+.+..+.+++.. ++.|-...+.|+.. ....+...+. .....++..-.+... ....+..|..|.-+
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~--~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~~T~~e~l~ 115 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE--SWIAIGLTLGAWINWKLVAGRLRVHT-EYNNNALTLPDYFT 115 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCceeHHHHHH
Confidence 4778888888888877777766 66888777788643 1111111122 111122221111100 00111568999999
Q ss_pred HHhCCcceee---hhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCC
Q 011548 111 ASLGGRSVQL---CGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFH 187 (483)
Q Consensus 111 ~~~G~~~~~i---~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~ 187 (483)
+-||++.+.+ ..+...+.....+.+.+...+..++.+. .++.....++..++...-...-.++
T Consensus 116 ~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~--------------gi~~~~~iii~~~iv~iYt~~GGl~ 181 (502)
T PRK15419 116 GRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTF--------------GMSYETALWAGAAATILYTFIGGFL 181 (502)
T ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------CCCHHHHHHHHHHHHHHHHHhhhHH
Confidence 9999765443 3333344444444555555566665554 2223344555556666666777788
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 011548 188 KLSWLSILAAVMSFAYSSI 206 (483)
Q Consensus 188 ~l~~~s~~~~~~~~~~~~i 206 (483)
...+...+-.+.++...++
T Consensus 182 aV~~TD~iQ~~imi~g~i~ 200 (502)
T PRK15419 182 AVSWTDTVQASLMIFALIL 200 (502)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888887776655544333
No 72
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.97 E-value=0.037 Score=58.36 Aligned_cols=149 Identities=13% Similarity=0.090 Sum_probs=91.5
Q ss_pred cccCcHHHHHHHHHHhhhhHh-hhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHH
Q 011548 33 KRTGTWVTASAHIITAVIGSG-VLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (483)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~G-iL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~ 111 (483)
.|+.++|...+.+..+.++++ .++.|-.....|+..-... +...+-......++.+-.|+.+ ..|..|.-++
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~-~g~~~~~~~~~~~~~p~~rr~~------~~T~~e~l~~ 103 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYL-MGWTGGYVLLALLLAPYLRKFG------KYTVPDFIGD 103 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHHHHHHHHHHHHHCC------CccHHHHHHH
Confidence 477888888888888877654 5778876666775321111 1111111123345555555543 5688888888
Q ss_pred HhCCc-ceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchh
Q 011548 112 SLGGR-SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLS 190 (483)
Q Consensus 112 ~~G~~-~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~ 190 (483)
-||++ .+.+..+...+.........+...+..++.+.. .+....+++..++....+..-.++...
T Consensus 104 Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~i~~iYt~~GG~~aV~ 169 (552)
T TIGR03648 104 RYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE--------------VDFETGVFIGMAIVFFYAVLGGMKGVT 169 (552)
T ss_pred HhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 88866 466666666666666677777777777766652 223334455555555556666778877
Q ss_pred HHHHHHHHHHHH
Q 011548 191 WLSILAAVMSFA 202 (483)
Q Consensus 191 ~~s~~~~~~~~~ 202 (483)
+...+-.+.++.
T Consensus 170 ~TD~iQ~iim~i 181 (552)
T TIGR03648 170 WTQVAQYIVLIV 181 (552)
T ss_pred HHHHHHHHHHHH
Confidence 777777555444
No 73
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.90 E-value=0.0087 Score=59.35 Aligned_cols=74 Identities=11% Similarity=0.029 Sum_probs=49.1
Q ss_pred HHHHhhhhHhhhHHHHH-HHhhC--hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHhCCcceee
Q 011548 44 HIITAVIGSGVLSLAWA-IAQLG--WVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQL 120 (483)
Q Consensus 44 ~li~~~iG~GiL~LP~~-f~~~G--~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~~i 120 (483)
.+..-.+|+|.|-.|-. -.++| |..+++.+++.++..-..+.. +..+ .| -+|+++.+ ..||+...+
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~~----~g---G~~~~l~~-~~g~~f~~l 71 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALAL----VG---GGYDSLSA-RIGKVFGIL 71 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eeee----cC---CCHHHHHH-HhChHHHHH
Confidence 35567899999999865 33454 677888888888777666555 1111 11 27888887 457888777
Q ss_pred hhhhHHHH
Q 011548 121 CGLAQYGN 128 (483)
Q Consensus 121 ~~~~~~~~ 128 (483)
..+.+++.
T Consensus 72 f~~~~~l~ 79 (378)
T TIGR00796 72 FTVILYLT 79 (378)
T ss_pred HHHHHHHH
Confidence 76665543
No 74
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.82 E-value=0.043 Score=54.60 Aligned_cols=188 Identities=13% Similarity=0.119 Sum_probs=111.3
Q ss_pred HHHhcccCCCCcCCCCcCcHHHHHHHH-hCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCccccc
Q 011548 86 LLSDCYRSPDPVTGKRNYTYMDVVRAS-LGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYT 164 (483)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~y~~~~~~~-~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (483)
++.+-.|+.+ ++|..|....- --++.|.+..+...+..+...++.++-.+..+..+++ .
T Consensus 93 L~A~~LRk~G------kyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g--------------v 152 (529)
T COG4147 93 LIAEYLRKLG------KYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG--------------V 152 (529)
T ss_pred HHHHHHHhcC------CcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC--------------C
Confidence 4556566655 57999985544 4455777777778888888889999999988888873 3
Q ss_pred CCcchhHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhheeeeeecCCCC-Ccc------ccc----ccccccc
Q 011548 165 SNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGP-HAT------TLT----GTTVGVD 233 (483)
Q Consensus 165 ~~~~~~~~~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~-~~~------~~~----~~~~~~~ 233 (483)
+....+++..+++..-...-.++...|.+.+--+..+...++..++...+...+.. .-. +.+ ..++|.
T Consensus 153 ~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl- 231 (529)
T COG4147 153 PYHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGL- 231 (529)
T ss_pred CceeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCC-
Confidence 34455666666666667788888888888877665555444444433333221110 000 000 001110
Q ss_pred CCchhhHhHHHHHHHHHHHhhcCccchHhhHh-hcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHh
Q 011548 234 VSASEKVWRAFQAIGDVAFAYAFSTVLVEIQD-TLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYL 301 (483)
Q Consensus 234 ~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~-em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~ 301 (483)
...+..+++...-..++ |..-+|.+.- -..-|. .|+-|+++.++..+...+|+..-+.|+.
T Consensus 232 --~~~~~i~~isl~~aLm~---GTAgLPHil~RFfTvp~--~k~AR~Sv~wA~~fIg~fYi~~~~ig~~ 293 (529)
T COG4147 232 --LYKDPIDFISLGFALMV---GTAGLPHILMRFFTVPD--AKEARKSVFWATGFIGIFYILTPIIGAG 293 (529)
T ss_pred --cccCHHHHHHHHHHHHH---ccCCCCeEEEEEEecCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222233332222333 3334444432 222222 2888999999999999999977777765
No 75
>PRK10484 putative transporter; Provisional
Probab=97.70 E-value=0.097 Score=54.88 Aligned_cols=157 Identities=6% Similarity=-0.021 Sum_probs=79.1
Q ss_pred cccCcHHHHHHHHHHhhhhHhh-hHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHH
Q 011548 33 KRTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (483)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~Gi-L~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~ 111 (483)
.|+.+++-..+.+..+.++++. ++.|-...+.|+.... .....++........+..-.++.+ ..|..|+-++
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~-~~~~~~~~~~~~~~~~~p~~~r~~------~~T~~e~l~~ 109 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMA-WEVTAAIALIILALIFLPRYLKSG------ITTIPDFLEE 109 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC------CccHHHHHHH
Confidence 5778888888888877776665 6688766667754311 111111111122333333333322 5699999999
Q ss_pred HhCCcceeehhhhHHHHhhhh-HHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhH----HHHHHHHHhhcCCCC
Q 011548 112 SLGGRSVQLCGLAQYGNLIGV-TIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMI----IFACIQIVLSQIPNF 186 (483)
Q Consensus 112 ~~G~~~~~i~~~~~~~~~~g~-~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~pl~~~~~l 186 (483)
-||++.+.+......+..... +...+...+..++.+... . .....+...... +..++...-...-.+
T Consensus 110 Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~---~-----~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl 181 (523)
T PRK10484 110 RYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHV---S-----ELLGISYGAAIWLLVWLIGIIGAIYAVFGGL 181 (523)
T ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---h-----hhcCCcHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 999988776555443332222 222222233333333210 0 000111111111 122333444555677
Q ss_pred CchhHHHHHHHHHHHHHH
Q 011548 187 HKLSWLSILAAVMSFAYS 204 (483)
Q Consensus 187 ~~l~~~s~~~~~~~~~~~ 204 (483)
+...+...+-.+.++...
T Consensus 182 ~aV~~TD~iQ~vim~i~~ 199 (523)
T PRK10484 182 KAVAVSDTINGIGLLIGG 199 (523)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777766555443
No 76
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.60 E-value=0.073 Score=53.30 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhhhhhhhhhhhhhHHHHHHHhCC
Q 011548 382 SFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKI 435 (483)
Q Consensus 382 ~~~~~~~~~~~~~~~~~a~~~p~~~~v~~~~Gs~~~~~~~~ilP~l~~~~~~~~ 435 (483)
.+|...+....+++.++.+.+.+...++.+.+.+.+..+-+.++.++++-.+|+
T Consensus 325 ~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 325 RRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 567778877777767766666699999999999998888888888777776664
No 77
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.53 E-value=0.00021 Score=73.26 Aligned_cols=249 Identities=18% Similarity=0.088 Sum_probs=119.2
Q ss_pred ccccCcHHHHHHHHHHhhhhHhhhHHHHHHHh--hChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHH
Q 011548 32 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQ--LGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (483)
Q Consensus 32 ~~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~--~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~ 109 (483)
++|+.++++-+..-.+..+....+.+...... .++..+++..++..++...-..+......+ .| .+..-+.
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r----~G---l~~~v~s 77 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPR----TG---LPTMVLS 77 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHC----C------HHHHT
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccc----cC---CCchhcc
Confidence 45666666666655565555555554444322 345556666666665555544444443333 22 3678889
Q ss_pred HHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccC--CCC-cccccCCcchhHHHHHHHHHhhcCCCC
Q 011548 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRH--GHH-VKCYTSNNPLMIIFACIQIVLSQIPNF 186 (483)
Q Consensus 110 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~i~~pl~~~~~l 186 (483)
|..||.+|..+..+...+...|-........++.+..+.+....+.. ++. ...........++..++..+.. ....
T Consensus 78 R~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~g~ 156 (440)
T PF02133_consen 78 RASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFA-IYGM 156 (440)
T ss_dssp TTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHH-CTHH
T ss_pred hhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHH-hcCH
Confidence 99999999999999999999999999999999999998864211000 000 0000111111122222222222 3345
Q ss_pred CchhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhh-cCccchHhhHh
Q 011548 187 HKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAY-AFSTVLVEIQD 265 (483)
Q Consensus 187 ~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf-~~~~~i~~i~~ 265 (483)
+.++.+..+.........+... ++...+.+. ++....+. +.. +.. .+..++...+-.+ ....+.+...+
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~--~~~-~~~--~~~~~i~~~~~~~~~~~~~~~DysR 226 (440)
T PF02133_consen 157 KALRRLAVIAAPILLVVFIGML---IWALSKAGG--GPLLSAPA--SPS-PSG--SFLAAIALVIGSWISWAPNASDYSR 226 (440)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHH---HHHHHHCT---HHHCCS----S-----S---HHHHHHHHHCCCHHHHCCCHHHHT
T ss_pred HHHHhHHhhhhHHHHhhhhhee---EEEeecCCc--chhhhCcc--cch-hHH--HHHHHHHHHHhhhhhhhhccccHHh
Confidence 5666555555443333222221 111111111 11111000 000 000 1223332222222 33355668889
Q ss_pred hcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhh
Q 011548 266 TLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLA 302 (483)
Q Consensus 266 em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~ 302 (483)
.+|++ ++-.+....+..........+++++...
T Consensus 227 y~~~~----~~~~~~~~~~~~~~~~~~~~~g~lg~~~ 259 (440)
T PF02133_consen 227 YAKSD----TSAWWGFWLGFPGGFIPFVLVGILGAAA 259 (440)
T ss_dssp TC--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCC----CCcEEEEeehhhhHHHHHHHHHHHHHHH
Confidence 99876 6666777777777766666666665543
No 78
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.31 E-value=0.25 Score=50.34 Aligned_cols=45 Identities=11% Similarity=0.065 Sum_probs=33.8
Q ss_pred cHHHHHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHH
Q 011548 104 TYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVK 148 (483)
Q Consensus 104 ~y~~~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~ 148 (483)
+..|..++-+||+..++..+...+.+.+...+.....+..++.++
T Consensus 95 ~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 95 DLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred CHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999999888877777667777777777766666655543
No 79
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.16 E-value=0.066 Score=55.45 Aligned_cols=234 Identities=13% Similarity=0.005 Sum_probs=115.8
Q ss_pred hHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHhCCcceeehhhhHHHHhhhhHH
Q 011548 55 LSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTI 134 (483)
Q Consensus 55 L~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~~i~~~~~~~~~~g~~~ 134 (483)
|-+|+...++|++..+..+++...+..+|..-+..... .+...|.. -|.-+. +.+|+-.+--+....++.+...|.
T Consensus 88 LR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsT-NGaV~GGG--aYymIS-RsLGpEfGGSIGllFf~anV~~~a 163 (945)
T KOG1288|consen 88 LRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAIST-NGAVRGGG--AYYMIS-RSLGPEFGGSIGLLFFVANVFNCA 163 (945)
T ss_pred HHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCceecCc--eEEEEE-cccCcccCCeeeehhhHHHHhcch
Confidence 44678888999888888877776666666554443222 12222222 233333 356666555566666666777777
Q ss_pred HHHHHhhhhHHHHHhhcccccCC-CCcccccCCcchhHHHHH----HHHHhhcCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 011548 135 GYTITASISMVAVKRSNCFHRHG-HHVKCYTSNNPLMIIFAC----IQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIG 209 (483)
Q Consensus 135 ~y~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~i~ 209 (483)
.++..+.|-+-..+ .....+ ..++......+|-.+.+. +.+.+|++-+ .-.+..+.+-.+.+....+.+.+
T Consensus 164 m~isG~vE~il~nf---G~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGs-alfAkas~i~f~~is~s~~si~i 239 (945)
T KOG1288|consen 164 MNISGFVEPILDNF---GKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGS-ALFAKASNILFVVISVSLFSIPI 239 (945)
T ss_pred hhhhhhhHHHHHhc---CccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhhH-HHHHhhhhhhhhHHHHHHhhhhh
Confidence 77776666554443 222222 111222233344433333 3333344321 11122333322222222222222
Q ss_pred eeeeeecCCCCCc--cccc-------cccccccCCch--------------hhHhHHHHHHHHHHHhhcCccchHhhHhh
Q 011548 210 LSIAKVIGDGPHA--TTLT-------GTTVGVDVSAS--------------EKVWRAFQAIGDVAFAYAFSTVLVEIQDT 266 (483)
Q Consensus 210 ~~i~~~~~~~~~~--~~~~-------~~~~~~~~~~~--------------~~~~~~~~a~~~~~faf~~~~~i~~i~~e 266 (483)
..++....+.+.+ +... ....|+++++- ...-++-..++++.-+-.|...=-....|
T Consensus 240 S~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMSgE 319 (945)
T KOG1288|consen 240 SFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMSGE 319 (945)
T ss_pred eeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcCcc
Confidence 3333322222211 0000 00001111110 00112334555555555555555567789
Q ss_pred cccCCcchhhhHHHHHHHHHHHHHHHHHHHhHH
Q 011548 267 LKSSPPENKSMKRATAVGVTTTTLFYIMCGVMG 299 (483)
Q Consensus 267 m~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~g 299 (483)
+|+|+ |.++|-...++..++++|.++.++-
T Consensus 320 Lk~PS---kSIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 320 LKAPS---KSIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred ccCcc---ccCCccchHHHHHHHHHHHHHHHHh
Confidence 99998 8999999999999999999776543
No 80
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.11 E-value=0.064 Score=52.09 Aligned_cols=114 Identities=16% Similarity=0.102 Sum_probs=88.0
Q ss_pred CCCCccccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHH
Q 011548 28 DDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMD 107 (483)
Q Consensus 28 ~~~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~ 107 (483)
+|+.+.-..+.+...-+=..++-|+|-+.=|..-..-||+++.+.+++.+++..--+-...-.....+ + -.|..|
T Consensus 44 ~DGvDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~---~--G~Si~~ 118 (376)
T PF02554_consen 44 NDGVDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRH---K--GKSIGE 118 (376)
T ss_pred CCCCCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcC---C--CccHHH
Confidence 34444444555677888889999999999998889999999999999888887766666655333212 1 239999
Q ss_pred HHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHH
Q 011548 108 VVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVA 146 (483)
Q Consensus 108 ~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~ 146 (483)
++++..||+++.+..+..++.+.....++.....+.+..
T Consensus 119 i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 119 IAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999888888888877776666543
No 81
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.04 E-value=0.11 Score=52.33 Aligned_cols=85 Identities=20% Similarity=0.136 Sum_probs=55.0
Q ss_pred ccCcHHHHHHHHHHhhhhHh-hhHHHHHHHhhChhHHHHHHHHHHHHHHHHHH---HHHhcccCCCCcCCCCcCcH----
Q 011548 34 RTGTWVTASAHIITAVIGSG-VLSLAWAIAQLGWVAGPAVLMAFSFITYYTST---LLSDCYRSPDPVTGKRNYTY---- 105 (483)
Q Consensus 34 ~~~s~~~~~~~li~~~iG~G-iL~LP~~f~~~G~~~gii~li~~~~~~~~t~~---~l~~~~~~~~~~~~~~~~~y---- 105 (483)
++.|.+++.+..+.+.+|.| |++.|.+....| +.++..+.+.+++..-+.+ .|..-.++.++ ..+|
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~-----~g~~~GGP 118 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDA-----DGVFRGGP 118 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCC-----CCCEecCh
Confidence 45889999999999999998 999999966555 6676666665555443333 33333332221 1124
Q ss_pred -HHHHHHHhCCcceeehhhh
Q 011548 106 -MDVVRASLGGRSVQLCGLA 124 (483)
Q Consensus 106 -~~~~~~~~G~~~~~i~~~~ 124 (483)
.++-+...|||...+..++
T Consensus 119 ~yyi~~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 119 MYYIKKGLGMRWLAVLFAVF 138 (425)
T ss_pred HHHHHHHhCccHHHHHHHHH
Confidence 6676777777755554444
No 82
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=96.97 E-value=0.44 Score=50.11 Aligned_cols=108 Identities=21% Similarity=0.289 Sum_probs=78.2
Q ss_pred ccCcHHHHHHHHHHhhhhHhhh-HHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccC-CCCcCCCCcCcHHHHHHH
Q 011548 34 RTGTWVTASAHIITAVIGSGVL-SLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRS-PDPVTGKRNYTYMDVVRA 111 (483)
Q Consensus 34 ~~~s~~~~~~~li~~~iG~GiL-~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~-~~~~~~~~~~~y~~~~~~ 111 (483)
+-++......--+..+.|.=.+ -|-+....+|...+.++.++|+..+..|+.-+...+.. .-|..| +|--+.|
T Consensus 113 ~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGG----sYfmISR- 187 (1075)
T KOG2082|consen 113 RMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGG----SYFMISR- 187 (1075)
T ss_pred ccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC----eeEEEec-
Confidence 3355556666777888877553 37788889999999999999999998888877764431 122222 5665554
Q ss_pred HhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHH
Q 011548 112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVA 146 (483)
Q Consensus 112 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~ 146 (483)
.+|+-.+-.+.++.++-...+...|++..-+.+-.
T Consensus 188 sLGPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~ 222 (1075)
T KOG2082|consen 188 SLGPEFGGAVGLCFYLGTTVAAAMYILGAVEIFLT 222 (1075)
T ss_pred ccCccccceeeehhhhhhHHHHHHHHHhHHHHHHH
Confidence 77888888889888888888888888876666554
No 83
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=95.90 E-value=2.1 Score=42.52 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=49.6
Q ss_pred cHHHHHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhc-
Q 011548 104 TYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ- 182 (483)
Q Consensus 104 ~y~~~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~- 182 (483)
+..|..++.+||+..+...+...+.+.....+-+...+..++.+. ..+...+.++.++..+.+.+
T Consensus 43 ~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~--------------g~~~~~~~~~~~~~~~~ll~~ 108 (358)
T PF01566_consen 43 GLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF--------------GIPLWIWVLLVAVIAILLLWL 108 (358)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------------CCCcHHHHHHHHHHHHHHHHH
Confidence 677787888899988888888777777777777777766665544 12334555555554444444
Q ss_pred -CCCCCchhHHHH
Q 011548 183 -IPNFHKLSWLSI 194 (483)
Q Consensus 183 -~~~l~~l~~~s~ 194 (483)
.++.+.+..+..
T Consensus 109 ~~~~y~~~E~~~~ 121 (358)
T PF01566_consen 109 SSGGYRRLERILK 121 (358)
T ss_pred HhccchHHHHHHH
Confidence 455555554443
No 84
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=95.63 E-value=0.073 Score=54.39 Aligned_cols=240 Identities=14% Similarity=0.087 Sum_probs=130.6
Q ss_pred cCcHHHHHHHH-HHhhhhHhh-hHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHH
Q 011548 35 TGTWVTASAHI-ITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS 112 (483)
Q Consensus 35 ~~s~~~~~~~l-i~~~iG~Gi-L~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~ 112 (483)
+-+||.+++.- +-.+.|.=. |-+++...++|+..+++++..+.+++..|..--.-...+-.-+.|. .|.-++ +.
T Consensus 29 ~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg---~yflis-~s 104 (643)
T KOG2083|consen 29 LFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG---VYFLIS-RS 104 (643)
T ss_pred EEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc---EEEEEE-ec
Confidence 33555544432 233444322 4578999999999999888887777666654443322221112221 343333 46
Q ss_pred hCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchhHH
Q 011548 113 LGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWL 192 (483)
Q Consensus 113 ~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~~~ 192 (483)
+|+..+--+.++..+.+.-.+..|.+.++|.+..+++.. +..-.+. ...+..+++..++..+ ++.-+.+
T Consensus 105 lg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~--------s~~~i~g--i~~vt~~ill~i~~ag-~~w~~k~ 173 (643)
T KOG2083|consen 105 LGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETE--------SKEMIDG--IGSVTVLILLAINVAG-VEWEAKL 173 (643)
T ss_pred ccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhc--------cHHHhcc--hhHHHHHHHHHhhhcc-chhHHHH
Confidence 788877788888888899999999999999999998641 1111111 1222233333333332 3333333
Q ss_pred HHHHHHHHHHHHHHhhheeeeeec--CCCCCccccccc--cccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhcc
Q 011548 193 SILAAVMSFAYSSIGIGLSIAKVI--GDGPHATTLTGT--TVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLK 268 (483)
Q Consensus 193 s~~~~~~~~~~~~i~i~~~i~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~ 268 (483)
..+-.....+.+.-.++-++..-. +.+....+-..+ +..++.++. ..+|..++++.=+..|.-.=..+..++|
T Consensus 174 q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~---~tfF~vf~vfFpaatgilaG~nisGdL~ 250 (643)
T KOG2083|consen 174 QIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPG---YTFFSVFAVFFPAATGILAGANISGDLK 250 (643)
T ss_pred HHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCC---CceEeeeeeecchhhhhhccccccCCCC
Confidence 322222111111111111111110 001111111111 111122211 3566666666667766666677889999
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHH
Q 011548 269 SSPPENKSMKRATAVGVTTTTLFYIMC 295 (483)
Q Consensus 269 ~~~~~~~~~~~~~~~a~~~~~~~Y~~~ 295 (483)
+|. +..++-...+....+.+|..+
T Consensus 251 ~Pq---~~IP~GaL~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 251 DPQ---KAIPLGALLAIGVSTLLYLIF 274 (643)
T ss_pred Cch---hhcccchhhhhhhhhhhhhhh
Confidence 996 889999999999999999643
No 85
>PRK15015 carbon starvation protein A; Provisional
Probab=95.57 E-value=0.13 Score=53.54 Aligned_cols=101 Identities=14% Similarity=0.151 Sum_probs=77.3
Q ss_pred HHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHhCCcce
Q 011548 39 VTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSV 118 (483)
Q Consensus 39 ~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G~~~~ 118 (483)
+-.+-+=..++-|+|-+-=|..-.+.||+++.+.+++.+++..--.-+..-.....+ + -.|..|++++..||+++
T Consensus 86 ~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~---~--GrSig~ia~~~iG~~~~ 160 (701)
T PRK15015 86 KVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRR---D--GRSLGELVKEEMGPTAG 160 (701)
T ss_pred cchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecC---C--CccHHHHHHHHhhHHHH
Confidence 356667788999999999999888999999999999888877665555554332111 1 23999999999999999
Q ss_pred eehhhhHHHHhhhhHHHHHHHhhhhH
Q 011548 119 QLCGLAQYGNLIGVTIGYTITASISM 144 (483)
Q Consensus 119 ~i~~~~~~~~~~g~~~~y~i~~~~~~ 144 (483)
.+..+..++.+.....++..+....+
T Consensus 161 ~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 161 VIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888877777777766666655554
No 86
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=95.53 E-value=2.5 Score=42.64 Aligned_cols=70 Identities=11% Similarity=0.084 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhhhHhhhHHHHHHH-hhC--hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHhC
Q 011548 38 WVTASAHIITAVIGSGVLSLAWAIA-QLG--WVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLG 114 (483)
Q Consensus 38 ~~~~~~~li~~~iG~GiL~LP~~f~-~~G--~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G 114 (483)
.+...+.+..-..|+|=|-.|-... ++| |..+.+.+++.++.--.-+.+-.-.. + .++++++++. |
T Consensus 5 ~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~~---~-------~~~~~l~~~v-~ 73 (427)
T PF05525_consen 5 ILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAKS---G-------GGIEDLASRV-G 73 (427)
T ss_pred hhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc---C-------CCHHHHhccc-C
Confidence 4567778889999999999986543 244 88888888887775544332222211 1 1688877654 3
Q ss_pred Ccce
Q 011548 115 GRSV 118 (483)
Q Consensus 115 ~~~~ 118 (483)
|+..
T Consensus 74 ~~f~ 77 (427)
T PF05525_consen 74 PKFA 77 (427)
T ss_pred cHHH
Confidence 4433
No 87
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=95.42 E-value=0.62 Score=47.56 Aligned_cols=112 Identities=15% Similarity=0.094 Sum_probs=82.5
Q ss_pred CCCCCccccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHH
Q 011548 27 DDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYM 106 (483)
Q Consensus 27 ~~~~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~ 106 (483)
.+|+.+.-..+.+..+-+=..++-|+|-+-=|.--++.||+++.+.+++.+++..--.-.++--....+ + -.|..
T Consensus 43 ~nDG~DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~---~--G~Si~ 117 (575)
T COG1966 43 KNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRH---G--GKSIG 117 (575)
T ss_pred ccCCcccccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeecc---C--CccHH
Confidence 444444444455667778888999999999999999999999999999998888766666665332211 1 23999
Q ss_pred HHHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhh
Q 011548 107 DVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASIS 143 (483)
Q Consensus 107 ~~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~ 143 (483)
|++++.+|+..+.+..+...+........+.......
T Consensus 118 ~ia~~~lG~~a~~~~~~~~l~iliiv~Avfa~vv~~~ 154 (575)
T COG1966 118 EIAGKYLGRTAKVFFLLLALILLILVGAVFAAVIAKL 154 (575)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888777666665555555444433
No 88
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=94.16 E-value=0.72 Score=47.96 Aligned_cols=246 Identities=15% Similarity=0.117 Sum_probs=122.5
Q ss_pred cccCcHHHHHHHHHHhhhhHhh-hHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcC-CCCcCcHHHHHH
Q 011548 33 KRTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVT-GKRNYTYMDVVR 110 (483)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~Gi-L~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~-~~~~~~y~~~~~ 110 (483)
.|+..++...+.+..+.+|++. +++|.--.+.|.-. ..+.+.+++ ...++.... -|.. +....+-.|.-+
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~--~~~~~~~l~---~~~~~~~~f---~Pvf~~~~v~~~~eYl~ 115 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQY--WFFEWNALL---SVLLLGWIF---IPVFYRLGVTTMYEYLE 115 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHH--HHHHHHHHH---HHHhhheEE---EEEEEecCeeehhHHHH
Confidence 3566677777888877777765 77887766666432 122222222 122222211 1110 111346666667
Q ss_pred HHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchh
Q 011548 111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLS 190 (483)
Q Consensus 111 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~ 190 (483)
+-||++.+.+..+...+..+.-...++..-+-.+++.... +.....++..++...-...-.++..-
T Consensus 116 ~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~--------------~~~l~~~~~~~ic~~YT~~GGlkaVi 181 (585)
T KOG2349|consen 116 KRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGI--------------NLYLIVVILGLICVFYTALGGLKAVI 181 (585)
T ss_pred HHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhcc--------------CceeehHHHHHHHHHHHHhcCeeEEE
Confidence 7888887777666666666555555555545555554421 11122222223333333344556666
Q ss_pred HHHHHHHHHHHHHHHHhhheeeeeec------CCCCCccccccc-cccccCCchhhHhHHHHH-HHHHHHhhcCccchHh
Q 011548 191 WLSILAAVMSFAYSSIGIGLSIAKVI------GDGPHATTLTGT-TVGVDVSASEKVWRAFQA-IGDVAFAYAFSTVLVE 262 (483)
Q Consensus 191 ~~s~~~~~~~~~~~~i~i~~~i~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a-~~~~~faf~~~~~i~~ 262 (483)
|.-.+-...++.....+.+.+..+.. +.....+..+.. .+..|.+....+|..+.+ ...-.-.|+.+++.
T Consensus 182 ~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~-- 259 (585)
T KOG2349|consen 182 WTDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLI-- 259 (585)
T ss_pred EhhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHH--
Confidence 66666666555544454444433321 111111122111 122244555566765543 33444455666666
Q ss_pred hHhhcccCCcchhhhHHHHHHHHHHHHHHHH---HHHhHHHhhcC
Q 011548 263 IQDTLKSSPPENKSMKRATAVGVTTTTLFYI---MCGVMGYLAFG 304 (483)
Q Consensus 263 i~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~---~~g~~gy~~fg 304 (483)
+++.+.-|+. ++-++.........++... ..|+.-|..|.
T Consensus 260 VQR~lsl~sl--k~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~ 302 (585)
T KOG2349|consen 260 VQRYLSLPSL--KHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYT 302 (585)
T ss_pred HhHHhccccH--HHhhhhhhhhhhHHHHHHHhhcccceeEeeecc
Confidence 4555544433 7788877766555555544 45555555554
No 89
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=93.66 E-value=9 Score=38.81 Aligned_cols=70 Identities=10% Similarity=0.018 Sum_probs=44.6
Q ss_pred cHHHHHHHHHHhhhhHhhhHHHHHHH-hhC--hhHHHHHHHHHHHHHHH-HHHHHHhcccCCCCcCCCCcCcHHHHHHHH
Q 011548 37 TWVTASAHIITAVIGSGVLSLAWAIA-QLG--WVAGPAVLMAFSFITYY-TSTLLSDCYRSPDPVTGKRNYTYMDVVRAS 112 (483)
Q Consensus 37 s~~~~~~~li~~~iG~GiL~LP~~f~-~~G--~~~gii~li~~~~~~~~-t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~ 112 (483)
..+...+.+..-..|+|=|-.|-... ++| |..+.+.+++.++.--. +...+.+. + .++++++++.
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~----~-------g~~~~l~~rv 77 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKV----G-------GGVDSLSTPI 77 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc----C-------CCHHHHhhhc
Confidence 45677888889999999999986544 344 77778777777664333 33333331 1 1688887654
Q ss_pred hCCcce
Q 011548 113 LGGRSV 118 (483)
Q Consensus 113 ~G~~~~ 118 (483)
||+..
T Consensus 78 -~~~f~ 82 (439)
T PRK15433 78 -GKVAG 82 (439)
T ss_pred -chHHH
Confidence 34433
No 90
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=92.78 E-value=2.4 Score=42.66 Aligned_cols=265 Identities=15% Similarity=0.081 Sum_probs=131.8
Q ss_pred CccccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhC--hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHH
Q 011548 31 RAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLG--WVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDV 108 (483)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G--~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~ 108 (483)
+.+|+=++|+-...=+...++.+..-+...--++| |.-+++..++.-+++.. .++-..+ .+... ..++.-.
T Consensus 51 ~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~---f~~lns~-~G~~y---hIsFpv~ 123 (572)
T KOG2466|consen 51 PSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAI---FLVLNSR-PGSDY---HISFPVL 123 (572)
T ss_pred cccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHH---HHHHccC-CCccc---ccceeee
Confidence 44666788887777777788888777777766777 44555554444333332 2222211 12111 2466666
Q ss_pred HHHHhCCcceee---hhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccc---cCCCCccccc--CCcchhHHHHHHHHHh
Q 011548 109 VRASLGGRSVQL---CGLAQYGNLIGVTIGYTITASISMVAVKRSNCFH---RHGHHVKCYT--SNNPLMIIFACIQIVL 180 (483)
Q Consensus 109 ~~~~~G~~~~~i---~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~i~~pl 180 (483)
.|..||-++... ..+...+..+|. ..-+.++.++..++...-+ .....+.... .+....+++-++-.|.
T Consensus 124 sR~sFGiygS~~pIi~R~vma~vwYg~---~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~ 200 (572)
T KOG2466|consen 124 SRSSFGIYGSLWPIINRVVMACVWYGV---NAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPF 200 (572)
T ss_pred eeeehhhhHhHHHHHHHHHHHHhhhhh---hhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhhe
Confidence 777777766543 222233333332 2245555555555442211 1111011011 1112234444555555
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhh-cCccc
Q 011548 181 SQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAY-AFSTV 259 (483)
Q Consensus 181 ~~~~~l~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf-~~~~~ 259 (483)
.+.+ .+++|++-....+.....++-+++....+.-. -+++...+. ..+.....|.++.++...+=.| ....|
T Consensus 201 ~~~~-p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG----~G~l~~~~s--t~~gs~~aWa~~~~i~~~~~~fstl~~N 273 (572)
T KOG2466|consen 201 YWFP-PYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHG----LGHLFDSKS--TVSGSAHAWAFVRSIMSCIANFSTLIVN 273 (572)
T ss_pred eecc-HHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCC----ccccccCCC--cccccchhHHHHHHHHHHHhccchhhcc
Confidence 5554 56666666666555555444444433333211 111111010 2233445566666655554444 45677
Q ss_pred hHhhHhhcccCCcchhhhHHHHHHHHHHHHHHH----HHHHhHHHhhcCCCCC--cccccccC
Q 011548 260 LVEIQDTLKSSPPENKSMKRATAVGVTTTTLFY----IMCGVMGYLAFGNDAP--GNFLTGFG 316 (483)
Q Consensus 260 i~~i~~em~~~~~~~~~~~~~~~~a~~~~~~~Y----~~~g~~gy~~fg~~~~--~~il~~~~ 316 (483)
.|...+--|+| .+..-....+..+.+.+- ++.+..++..||.+-- =+++.++.
T Consensus 274 ~pDFsRF~ksp----~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l 332 (572)
T KOG2466|consen 274 APDFSRFAKSP----NAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWL 332 (572)
T ss_pred CchhHhhcCCC----CccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHh
Confidence 88888877877 333333333333333333 3556677889998733 35666664
No 91
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=92.38 E-value=0.92 Score=45.97 Aligned_cols=152 Identities=14% Similarity=0.109 Sum_probs=94.2
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHHhHHHhhcCCCCCccccccc-CcCCchHHHHHHHHHHHHHHHHhhhccccchHHHHHH
Q 011548 275 KSMKRATAVGVTTTTLFY-IMCGVMGYLAFGNDAPGNFLTGF-GFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEK 352 (483)
Q Consensus 275 ~~~~~~~~~a~~~~~~~Y-~~~g~~gy~~fg~~~~~~il~~~-~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~l~~ 352 (483)
++-++....+..+....+ ++....++..|+. ..++...+. ...+++............+...+++...++.+....+
T Consensus 221 ~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~-~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tS 299 (415)
T COG0814 221 KNSKKAVRKAILIGSLIALVLYILVGFFVFGC-FGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATS 299 (415)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 555664555555555444 4788888888884 333444443 4444455545555556666668999999998877654
Q ss_pred HhhhhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCc-hHHHHHHhhhhhhhhhhhhhhHHHHHH
Q 011548 353 WCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPF-FNDFVGLIGAASFWPLTVYFPVEMYIA 431 (483)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~-~~~v~~~~Gs~~~~~~~~ilP~l~~~~ 431 (483)
.+.-...-.+..++..+. .+....|.........++.+.++..|. +....+.+|++..++.+-+.|.+++++
T Consensus 300 Flgv~lg~~~~~~~~~~~-------~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~ 372 (415)
T COG0814 300 FLGVYLGLFEGLADLFKK-------SNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIK 372 (415)
T ss_pred HhCchhhHHHhhhHHHHh-------ccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 332110000000100000 011134556666677777788888775 888889999999999999999999999
Q ss_pred HhC
Q 011548 432 RTK 434 (483)
Q Consensus 432 ~~~ 434 (483)
-++
T Consensus 373 p~~ 375 (415)
T COG0814 373 PRK 375 (415)
T ss_pred HHH
Confidence 654
No 92
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=91.32 E-value=18 Score=36.53 Aligned_cols=86 Identities=20% Similarity=0.244 Sum_probs=52.9
Q ss_pred CCCccccCcHHHHHHHHHHhhhhHhhh-HHHHHHHhhChhHHHHHHHHHHHHHH---HHHHHHHhcccCCCCcCCCCcCc
Q 011548 29 DGRAKRTGTWVTASAHIITAVIGSGVL-SLAWAIAQLGWVAGPAVLMAFSFITY---YTSTLLSDCYRSPDPVTGKRNYT 104 (483)
Q Consensus 29 ~~~~~~~~s~~~~~~~li~~~iG~GiL-~LP~~f~~~G~~~gii~li~~~~~~~---~t~~~l~~~~~~~~~~~~~~~~~ 104 (483)
+++++++.|.+++.+.-+.+.+|.|=. +...+.. .|-+.++..+.+.+++.. |+=..|..-.|+.+++ |.-.-.
T Consensus 12 ~~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~-~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~-G~~~GG 89 (416)
T PF01235_consen 12 KKEEEGGISPFQALCTALAGTVGTGNIAGVATAIA-IGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDED-GEYRGG 89 (416)
T ss_pred CCCCCCCcChHHHHHHHHHhccCcchHHHHHHHHH-hhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCC-CCEeec
Confidence 334456789999999999999999964 4677776 555667777776666543 4444555555543322 111112
Q ss_pred HHHHHHHHhCCc
Q 011548 105 YMDVVRASLGGR 116 (483)
Q Consensus 105 y~~~~~~~~G~~ 116 (483)
-....++.+|+|
T Consensus 90 P~yyi~~gl~~k 101 (416)
T PF01235_consen 90 PMYYIEKGLGSK 101 (416)
T ss_pred HHHHHHHHhccc
Confidence 334455666655
No 93
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=90.64 E-value=20 Score=36.09 Aligned_cols=241 Identities=12% Similarity=0.043 Sum_probs=115.3
Q ss_pred CcHHHHHHHHHHhhhhHhh-hHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHHHhC
Q 011548 36 GTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLG 114 (483)
Q Consensus 36 ~s~~~~~~~li~~~iG~Gi-L~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~G 114 (483)
.|-..-+...+++.+|-|= --.||...+.|-. +.++.-++..+..---.++.|-.--+..+.+ ...+|+.+..
T Consensus 9 ~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGg-AFll~yli~~l~~GiPlli~Ef~iGr~~~~~-~~~a~~~l~~---- 82 (439)
T COG0733 9 SSRLGFILAAAGSAVGLGNIWRFPYMAGENGGG-AFLLPYLIFLLLVGIPLLLAEFAIGRRGRKN-AVGAFRKLAP---- 82 (439)
T ss_pred hhHHHHHHHHHHHHhcccccccCCeEeeecCcc-hHHHHHHHHHHHHhHHHHHHHHHhhhhcCCC-hhHHHHHhcc----
Confidence 4445566677788888884 6689987777632 2222222333333333344443311111111 0225655443
Q ss_pred CcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCc---c-c--ccCCcchhHHH---HHHHHHhhcCCC
Q 011548 115 GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHV---K-C--YTSNNPLMIIF---ACIQIVLSQIPN 185 (483)
Q Consensus 115 ~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~---~-~--~~~~~~~~~~~---~~i~~pl~~~~~ 185 (483)
++....+.+......+..+.-|.++.+=.+..+..........+.+ . . ..++....+.. ..++..+...|.
T Consensus 83 ~~~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~G 162 (439)
T COG0733 83 KKKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRG 162 (439)
T ss_pred CccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHh
Confidence 3444455666666777777777777777777666542211110000 0 0 01112211221 122222223344
Q ss_pred CCc-hhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCcccccccc--ccccCCchhhHhHHHHHHHHHHHhhc-CccchH
Q 011548 186 FHK-LSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT--VGVDVSASEKVWRAFQAIGDVAFAYA-FSTVLV 261 (483)
Q Consensus 186 l~~-l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~faf~-~~~~i~ 261 (483)
+++ ....+-+.+...+.+.++++++++. .++ ..++.. ..||++.-.+..-...|++...|+.. |...+.
T Consensus 163 V~~GIEk~~kimMP~Lfvl~i~Lvi~~~t---LpG----A~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mi 235 (439)
T COG0733 163 VKKGIEKANKIMMPLLFVLFIILVIRAVT---LPG----AMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMI 235 (439)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHc---Ccc----HHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 444 5667777666666555555544432 222 112221 11233322222345578888888874 445555
Q ss_pred hhHhhcccCCcchhhhHHHHHHHHHHHHHHHH
Q 011548 262 EIQDTLKSSPPENKSMKRATAVGVTTTTLFYI 293 (483)
Q Consensus 262 ~i~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~ 293 (483)
+-.+.++++ +++.+........-+.+=+
T Consensus 236 tYsSYL~k~----~~l~~sa~~v~~~n~~~s~ 263 (439)
T COG0733 236 TYSSYLSKK----SDLVSSALSIVLLNTLISL 263 (439)
T ss_pred HHHhhcCcc----cchhhhHHHHHHHHHHHHH
Confidence 556666655 6777755444444443333
No 94
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=89.66 E-value=1.9 Score=42.90 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=53.9
Q ss_pred cCcHHHHHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhh
Q 011548 102 NYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLS 181 (483)
Q Consensus 102 ~~~y~~~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~ 181 (483)
..-..+++++.||+.|..+..+...+.|+.++++.....+|+..++.+ ..+++.|.++.+++.+.++
T Consensus 254 ~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~-------------k~~y~~~v~~~~l~s~~ia 320 (378)
T TIGR00796 254 AQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP-------------KLSYKTWVIVFTLFSFIVA 320 (378)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CCCHHHHHHHHHHHHHHHH
Confidence 346788899999999999999999999999999999999999888742 2445566666655555554
Q ss_pred c
Q 011548 182 Q 182 (483)
Q Consensus 182 ~ 182 (483)
.
T Consensus 321 ~ 321 (378)
T TIGR00796 321 N 321 (378)
T ss_pred H
Confidence 4
No 95
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=89.57 E-value=30 Score=36.33 Aligned_cols=101 Identities=14% Similarity=0.088 Sum_probs=48.9
Q ss_pred cHHHHHHHHHHhhhhHh-hhHHHHHHHhhC-hh---HHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHH
Q 011548 37 TWVTASAHIITAVIGSG-VLSLAWAIAQLG-WV---AGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (483)
Q Consensus 37 s~~~~~~~li~~~iG~G-iL~LP~~f~~~G-~~---~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~ 111 (483)
+..+-....++..+|-| +.-.|+-..+-| .. +=.+.++++++=..+.=..+.+-.++.. ...|.+++..
T Consensus 6 ~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~~~------~~~~~~~~p~ 79 (523)
T PF00209_consen 6 SKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRSGP------IGAWKRLCPI 79 (523)
T ss_dssp -HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTS------HHHS-HHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------cccccccccc
Confidence 44567788889999998 788998755544 22 1222333333333343344444433321 1234444433
Q ss_pred HhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHh
Q 011548 112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKR 149 (483)
Q Consensus 112 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~ 149 (483)
.-| +.+...+..+...+-|.+..+..+..+..
T Consensus 80 ~~g------iG~~~~~~~~~~~~yy~vi~~w~l~Y~~~ 111 (523)
T PF00209_consen 80 FKG------IGYAMVLISFLIAIYYSVIVAWALYYFFQ 111 (523)
T ss_dssp HHT------HHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc------ccccccccccccccccccccccccccccc
Confidence 222 33344444444555555555555554443
No 96
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=87.94 E-value=3.2 Score=41.90 Aligned_cols=69 Identities=13% Similarity=0.201 Sum_probs=58.1
Q ss_pred cCcHHHHHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhh
Q 011548 102 NYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLS 181 (483)
Q Consensus 102 ~~~y~~~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~ 181 (483)
..-..+++++.+|+.|..+..++..+.|.-++++.....+|+.++..+ ..+++.|.++.+++-+.++
T Consensus 260 ~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~-------------kisY~~~v~i~~i~S~~ia 326 (427)
T PF05525_consen 260 AELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP-------------KISYKVWVIIFTIFSFIIA 326 (427)
T ss_pred HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------ccChHHHHHHHHHHHHHHH
Confidence 346788899999999999999999999999999999999999999874 3556778877777766665
Q ss_pred cC
Q 011548 182 QI 183 (483)
Q Consensus 182 ~~ 183 (483)
-.
T Consensus 327 n~ 328 (427)
T PF05525_consen 327 NL 328 (427)
T ss_pred Hh
Confidence 43
No 97
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=84.27 E-value=5.2 Score=39.75 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=56.3
Q ss_pred cCcHHHHHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhh
Q 011548 102 NYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLS 181 (483)
Q Consensus 102 ~~~y~~~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~ 181 (483)
..=..+..++.||+.|..+...++.+.|.-++++.....+|+..++.+ ..++..|..++.++-+.++
T Consensus 262 ~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p-------------~~SY~~~v~if~i~sflva 328 (431)
T COG1114 262 GQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVP-------------KLSYKTWVIIFTLISFLVA 328 (431)
T ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------cccHHHHHHHHHHHHHHHH
Confidence 345778889999999999999999999999999999999999999875 3556677777777666654
Q ss_pred c
Q 011548 182 Q 182 (483)
Q Consensus 182 ~ 182 (483)
-
T Consensus 329 n 329 (431)
T COG1114 329 N 329 (431)
T ss_pred H
Confidence 4
No 98
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=82.85 E-value=51 Score=32.49 Aligned_cols=245 Identities=13% Similarity=0.064 Sum_probs=121.8
Q ss_pred ccCcHHHHHHHHHHhhhhHhh-hHHHHHHHhhChhHHHHHHHHHHH-HHHHHHHHHHh----cccCCCCcCCCCcCcHHH
Q 011548 34 RTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSF-ITYYTSTLLSD----CYRSPDPVTGKRNYTYMD 107 (483)
Q Consensus 34 ~~~s~~~~~~~li~~~iG~Gi-L~LP~~f~~~G~~~gii~li~~~~-~~~~t~~~l~~----~~~~~~~~~~~~~~~y~~ 107 (483)
|+.+.+--.+....+=+++.- ++=|-+-.+.|+-+ +.+..+-+ ..+.+...+.+ .+|+.+ ..+..|
T Consensus 39 Rsmgg~VlAmt~~aTYisaSSFigGpgaayk~Glgw--vlLa~iqvp~~~l~lgvlgkk~~~~ar~~n------AltI~D 110 (473)
T COG4145 39 RSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGW--VLLAMIQVPTVWLALGVLGKKFAILAREYN------ALTIND 110 (473)
T ss_pred CcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHhC------CeeHHH
Confidence 334433344444444444332 33466666666433 33333333 23333334443 223333 458888
Q ss_pred HHHHHh-CCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCC
Q 011548 108 VVRASL-GGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNF 186 (483)
Q Consensus 108 ~~~~~~-G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l 186 (483)
+-++-+ ++.-.++..+.+.+...+...+..+..+..++... ..++....++++..+..-...-..
T Consensus 111 ~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~--------------gidY~tgL~ifa~~V~iYt~fGGF 176 (473)
T COG4145 111 LLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETAL--------------GIDYTTGLLIFAVSVAIYTAFGGF 176 (473)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------------CCCchhhHHHHHHHHHHHHhhcce
Confidence 876543 44456677777888888888888888888877765 344556667777766666666666
Q ss_pred CchhHHHHHHHHHHHHHHHHhhheeeeeecCC-------CCCccccccccccccCCchhhHhHHHHHHHH-HHHhhcCcc
Q 011548 187 HKLSWLSILAAVMSFAYSSIGIGLSIAKVIGD-------GPHATTLTGTTVGVDVSASEKVWRAFQAIGD-VAFAYAFST 258 (483)
Q Consensus 187 ~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~faf~~~~ 258 (483)
+.....-.+.-..+++-.++...-.++....- ...++.... |++.+. .-...++.++-+ +.+.--+++
T Consensus 177 RAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~-P~~~~~---~l~~~Fm~Sfwilv~~gvlglP 252 (473)
T COG4145 177 RAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVT-PQGADD---ILDPPFMASFWILVCFGVLGLP 252 (473)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccC-CCCCcc---cccchHHHHHHHHHHHHHhcCc
Confidence 65555554444444433333332223221100 001111111 111010 001122222221 123334455
Q ss_pred chHhhHhhcccCCcchhhhHHHHHHHHHHHHHHHH---HHHhHHHhhcCCCCC
Q 011548 259 VLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYI---MCGVMGYLAFGNDAP 308 (483)
Q Consensus 259 ~i~~i~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~---~~g~~gy~~fg~~~~ 308 (483)
...-=+-.-||. |.+.+.+.++..+..++-+ +.|.+|...+.|-+.
T Consensus 253 ~t~vr~ia~kDs----kaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~ 301 (473)
T COG4145 253 HTAVRCIAFKDS----KAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTV 301 (473)
T ss_pred HHHHHHHhccch----hHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCc
Confidence 443333344655 7777777666655554444 678788888876533
No 99
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=80.42 E-value=8.3 Score=39.06 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=54.8
Q ss_pred cHHHHHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcC
Q 011548 104 TYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI 183 (483)
Q Consensus 104 ~y~~~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~ 183 (483)
-.....++.+|+++..+..+...+.|+-++++.....+|.+++.. ..+++.+.++.+++.++++..
T Consensus 266 il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~--------------~isY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 266 ILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYV--------------PLSYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------------CCcHHHHHHHHHHHHHHHHHh
Confidence 456667889999999999999999999999999999999988865 244567777777777777654
No 100
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=79.51 E-value=76 Score=32.29 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=39.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHcC--chHHHHHHhhhhhhhhhhhhhhHHHHHHH
Q 011548 378 YHVNSFRLVWRTAYVIVSAVLAMIFP--FFNDFVGLIGAASFWPLTVYFPVEMYIAR 432 (483)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~a~~~p--~~~~v~~~~Gs~~~~~~~~ilP~l~~~~~ 432 (483)
++.+.+|...|.+.++++++++++.. +++.+.++.-.+-+..+-|..=++++.-.
T Consensus 353 l~~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S~~LPFa~iPLl~ftS 409 (503)
T KOG1291|consen 353 LPPWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQSLQLPFAVIPLLTFTS 409 (503)
T ss_pred chHHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHHHhhhHHHhhHHhhhc
Confidence 33447888999999999999999974 57777777666665555555444555443
No 101
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=76.31 E-value=89 Score=31.37 Aligned_cols=71 Identities=8% Similarity=-0.048 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhhhHhhhHHHHHHH-hhC--hhHHHHHHHHHHHHHHH-HHHHHHhcccCCCCcCCCCcCcHHHHHHHHh
Q 011548 38 WVTASAHIITAVIGSGVLSLAWAIA-QLG--WVAGPAVLMAFSFITYY-TSTLLSDCYRSPDPVTGKRNYTYMDVVRASL 113 (483)
Q Consensus 38 ~~~~~~~li~~~iG~GiL~LP~~f~-~~G--~~~gii~li~~~~~~~~-t~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~ 113 (483)
.+..-+.+..-..|+|=+-.|-... ++| +..+.+-+++.++..=. +...+.+. + .++++++++.
T Consensus 7 ~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a~~----g-------~~~~~l~~~i- 74 (431)
T COG1114 7 IIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVALY----G-------GGVESLATRI- 74 (431)
T ss_pred HHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhhcc----C-------CCHHHHhhhc-
Confidence 4567777888899999988876533 234 55566666666653332 22222221 1 1688888755
Q ss_pred CCcceee
Q 011548 114 GGRSVQL 120 (483)
Q Consensus 114 G~~~~~i 120 (483)
|||.+.+
T Consensus 75 ~~~fg~~ 81 (431)
T COG1114 75 GPWFGVL 81 (431)
T ss_pred cchHHHH
Confidence 4554443
No 102
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=64.27 E-value=1.9e+02 Score=30.30 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhcCccchHhhHhhcccCC
Q 011548 242 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSP 271 (483)
Q Consensus 242 ~~~~a~~~~~faf~~~~~i~~i~~em~~~~ 271 (483)
..+..+|.++.+..|.+.+ +.+|-+-.
T Consensus 202 ~~~~~LG~V~L~~TGaEAL---yADmGHfg 228 (534)
T PF02705_consen 202 IGFFVLGAVFLCVTGAEAL---YADMGHFG 228 (534)
T ss_pred chhhhcchHHHHHhhHHHH---Hhhhcccc
Confidence 4567888888888888876 46777654
No 103
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=60.28 E-value=1.8e+02 Score=28.62 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCccccccc
Q 011548 275 KSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGF 315 (483)
Q Consensus 275 ~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~ 315 (483)
...++++..+...+...-+++..+||.......++++...+
T Consensus 44 ~~T~~al~~tll~alp~pl~~~~~g~~L~~~~~~~~~~~~l 84 (340)
T PF12794_consen 44 SHTPRALLLTLLLALPLPLLLLAIGYLLQFAAWSSPFSVAL 84 (340)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHH
Confidence 66888999999999999999999999998766666655554
No 104
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=56.12 E-value=2.3e+02 Score=28.52 Aligned_cols=45 Identities=11% Similarity=0.058 Sum_probs=28.7
Q ss_pred cHHHHHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHH
Q 011548 104 TYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVK 148 (483)
Q Consensus 104 ~y~~~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~ 148 (483)
+..|..++.++|+.++...+...+...+...+.....+..++.++
T Consensus 65 ~l~~~~r~~~~~~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll~ 109 (390)
T TIGR01197 65 DLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALNLLS 109 (390)
T ss_pred CHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999999877655544444445555555555555554443
No 105
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=51.52 E-value=3.3e+02 Score=29.09 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 011548 67 VAGPAVLMAFSFITYYTSTLLSDCYRSPDP 96 (483)
Q Consensus 67 ~~gii~li~~~~~~~~t~~~l~~~~~~~~~ 96 (483)
+.|++.+++.++.-.-+...+.-..+..+.
T Consensus 49 vlGvlSLIfWtL~livtiKYv~ivlrADn~ 78 (622)
T PRK10745 49 VFGFLSLIFWLLILVVSIKYLTFVMRADNA 78 (622)
T ss_pred eehhhHHHHHHHHHHHHHHhheEEEecCCC
Confidence 468888888888888888888777775543
No 106
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=51.23 E-value=2.8e+02 Score=28.22 Aligned_cols=65 Identities=25% Similarity=0.285 Sum_probs=45.6
Q ss_pred CccccCcHHHHHHHHHHhhhhHhhhH-HHHHHHhhChhHHHHHHHHHHHH---HHHHHHHHHhcccCCCC
Q 011548 31 RAKRTGTWVTASAHIITAVIGSGVLS-LAWAIAQLGWVAGPAVLMAFSFI---TYYTSTLLSDCYRSPDP 96 (483)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~GiL~-LP~~f~~~G~~~gii~li~~~~~---~~~t~~~l~~~~~~~~~ 96 (483)
++++..|.+++.+.-+.+-+|+|=++ ...+.+ .|-+.++..+.+.+++ +-|.=..|...+|..++
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~-~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~ 126 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIA-LGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDK 126 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHH-cCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCC
Confidence 34566789999999999999999654 677776 5556677777766664 44555566666665443
No 107
>PLN00149 potassium transporter; Provisional
Probab=49.62 E-value=4e+02 Score=29.41 Aligned_cols=56 Identities=13% Similarity=0.177 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhcCccchHhhHhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcC
Q 011548 243 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFG 304 (483)
Q Consensus 243 ~~~a~~~~~faf~~~~~i~~i~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg 304 (483)
.+..+|-++.+..|...+ +.+|-+-. ++=-|..+..+..-+++---+|-.+|+.-.
T Consensus 270 g~~~LGgV~L~iTG~EAL---yADlGHF~---~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~ 325 (779)
T PLN00149 270 GWMSLGGILLCITGSEAM---FADLGHFS---QLSIKIAFTSLVYPSLILAYMGQAAYLSKH 325 (779)
T ss_pred eeEeecchhhcccchhhh---hhcccCCC---ccceeeeehhhHHHHHHHHhhhHHHHHhcC
Confidence 456788888888888865 56666543 222333344433334333345555565533
No 108
>PHA02764 hypothetical protein; Provisional
Probab=47.39 E-value=2.8e+02 Score=27.00 Aligned_cols=93 Identities=12% Similarity=0.151 Sum_probs=59.6
Q ss_pred cccCcHHHHHH-HHHHhhhhHhhhHHHHHHHhh--ChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHH
Q 011548 33 KRTGTWVTASA-HIITAVIGSGVLSLAWAIAQL--GWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (483)
Q Consensus 33 ~~~~s~~~~~~-~li~~~iG~GiL~LP~~f~~~--G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~ 109 (483)
-|..+.+.+++ |+.+...|.++ +.|+-++.. |.. .+..+++.++++........|...+ -|+.|. .+.|.
T Consensus 11 VREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSA-mPrAGG-dYVYI--- 83 (399)
T PHA02764 11 IKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTK-FPLNGG-DYAYI--- 83 (399)
T ss_pred eeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCc-eEEEh---
Confidence 46677888877 55455555544 656643333 433 5667777888888877777776665 355554 23444
Q ss_pred HHHhCCcceeehhhhHHHHhhhh
Q 011548 110 RASLGGRSVQLCGLAQYGNLIGV 132 (483)
Q Consensus 110 ~~~~G~~~~~i~~~~~~~~~~g~ 132 (483)
++++||+.+.+..+..+......
T Consensus 84 SRAFGP~~GFLvG~a~WLtl~~G 106 (399)
T PHA02764 84 RTAFSSKFYTIFGISLWLTYVLS 106 (399)
T ss_pred HHhhCccHHHHHHHHHHHHHHhh
Confidence 57899999988887776554443
No 109
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=47.07 E-value=3.3e+02 Score=28.48 Aligned_cols=48 Identities=15% Similarity=0.059 Sum_probs=40.4
Q ss_pred cHHHHHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhc
Q 011548 104 TYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSN 151 (483)
Q Consensus 104 ~y~~~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~ 151 (483)
-..++-....||++.......+++..+..+++-++..+..+..+..+.
T Consensus 326 p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg 373 (550)
T KOG1289|consen 326 PIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDG 373 (550)
T ss_pred hHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccC
Confidence 577777889999999888888888899999998888888888877553
No 110
>PLN00151 potassium transporter; Provisional
Probab=45.59 E-value=4.7e+02 Score=29.07 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhcCccchHhhHhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhh
Q 011548 243 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLA 302 (483)
Q Consensus 243 ~~~a~~~~~faf~~~~~i~~i~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~ 302 (483)
.+..+|-++.+..|...+ +.+|-+-. ++=-+..+.....-+++---+|-.+|+.
T Consensus 346 gw~~LGgVvLciTGaEAL---fADLGHFg---~~sIqiaw~~~V~P~LlL~Y~GQaA~L~ 399 (852)
T PLN00151 346 AWSALGGCVLCATGSEAM---FADLGYFS---VRSIQLAFTCLVLPCLLLAYMGQAAYLM 399 (852)
T ss_pred eEEEecceeeeeccchhh---hcccCCCC---ccceeeeehhhHHHHHHHHHcchHHHHh
Confidence 345677777777777765 55665443 2222233333333333333344455554
No 111
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=42.94 E-value=1.7e+02 Score=23.37 Aligned_cols=57 Identities=7% Similarity=0.016 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHc---CchHHHHHHhhhhhhhhhhhhhhHHHHHHHhCCCcc
Q 011548 382 SFRLVWRTAYVIVSAVLAMIF---PFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRF 438 (483)
Q Consensus 382 ~~~~~~~~~~~~~~~~~a~~~---p~~~~v~~~~Gs~~~~~~~~ilP~l~~~~~~~~~~~ 438 (483)
.+++....++.+.-.+++... ..+..=..+..-+..+.++.++=-++++.+..+++.
T Consensus 17 ~k~y~iGFvLsIiLT~ipF~~vm~~~~~~~~~~~~i~~lA~iQi~vqLvyFlHM~~~~eg 76 (111)
T COG3125 17 LKSYLIGFVLSIILTLIPFWVVMTGALSSTVTLIIILGLAVIQILVHLVYFLHMNTKSEG 76 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhcccCCccc
Confidence 445555554444444444332 345566666666677788888877778877665444
No 112
>PRK11281 hypothetical protein; Provisional
Probab=41.61 E-value=4.4e+02 Score=30.58 Aligned_cols=31 Identities=6% Similarity=0.102 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHhhcCC
Q 011548 275 KSMKRATAVGVTTTTLFYIMCGVMGYLAFGN 305 (483)
Q Consensus 275 ~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~ 305 (483)
...++++.++...+....+.+..+||+.+..
T Consensus 540 ~~T~~al~~t~l~alp~~l~~~~~g~~~~~~ 570 (1113)
T PRK11281 540 LHTPKAILITLLLALPVTLIFLAVGLILLTD 570 (1113)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6677888888888888888888899987763
No 113
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=38.17 E-value=4.6e+02 Score=26.87 Aligned_cols=84 Identities=12% Similarity=0.148 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHcCc---hHHHHHHhhhhhhhhhhhhhhHHHHHHHhCCC-cchHHHHHHHHHHHHHHHHHHHHHHH
Q 011548 387 WRTAYVIVSAVLAMIFPF---FNDFVGLIGAASFWPLTVYFPVEMYIARTKIR-RFSFTWVWLKILIWSCFIVSLVALVG 462 (483)
Q Consensus 387 ~~~~~~~~~~~~a~~~p~---~~~v~~~~Gs~~~~~~~~ilP~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~g~~~ 462 (483)
....++....+.....++ ...++++.|.-..+.+.-++=+++.+..+|+. +++..++....+--.+.++-+.|..+
T Consensus 234 lPiiLI~~~t~~~~~~~~~~~~~~~~~flG~p~iALlig~l~a~~~l~~~~~~~~~~~~~~~~~al~~~g~IlLItgaGG 313 (441)
T PF02447_consen 234 LPIILILLGTVADLFLPKGSPLRSILSFLGDPNIALLIGVLIALYLLGRRRGMSREEVMKWLEKALKPAGMILLITGAGG 313 (441)
T ss_pred HHHHHHHHHHHHHhccCCcchHHHHHHHhCCcHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHhhhcchH
Confidence 334444444445555543 66788888887765555555444444433322 22333445666667777777777777
Q ss_pred HHHHHHHh
Q 011548 463 SVQGLIQS 470 (483)
Q Consensus 463 ~i~~l~~~ 470 (483)
+..+++.+
T Consensus 314 afg~vl~~ 321 (441)
T PF02447_consen 314 AFGQVLKD 321 (441)
T ss_pred HHHHHHHh
Confidence 77777664
No 114
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=35.59 E-value=39 Score=22.12 Aligned_cols=30 Identities=27% Similarity=0.425 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHhhcCCC
Q 011548 277 MKRATAVGVTTTTLFYIMCGVMGYLAFGND 306 (483)
Q Consensus 277 ~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~ 306 (483)
+..+..+++.+.+++-.+.|..-|.+||..
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 334666777777788888888888899964
No 115
>PRK12768 CysZ-like protein; Reviewed
Probab=34.55 E-value=3.8e+02 Score=24.86 Aligned_cols=28 Identities=18% Similarity=0.058 Sum_probs=19.3
Q ss_pred HhhcccCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 011548 264 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCG 296 (483)
Q Consensus 264 ~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g 296 (483)
.+++.|| +++++...+...+..++....
T Consensus 9 ~~ql~~~-----~~r~vl~~~~~lt~~l~~~~~ 36 (240)
T PRK12768 9 LARLLSP-----PMRSVFWKVLGLTLLLLVVLW 36 (240)
T ss_pred HHHhCCH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 3455554 588888888887777776543
No 116
>PLN02810 carbon-monoxide oxygenase
Probab=34.26 E-value=3.7e+02 Score=24.69 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCcccccccCcCCchHHHHHHHHHHHHHHHHhhhccccch
Q 011548 275 KSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPI 346 (483)
Q Consensus 275 ~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 346 (483)
|+.+|.+....-...++...+|+.....|-++.. +.+-+. -++|.....-..+.++-+..+-.+.+|.
T Consensus 76 k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~--i~nlyS--LHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~ 143 (231)
T PLN02810 76 KEVKKLIHLVLHAIALILGIFGICAAFKNHNESG--IANLYS--LHSWLGIGIISLYGIQWIYGFIVFFFPG 143 (231)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccC--CCceee--HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6778899999888888888888888777765542 322222 3678887887888888888877666663
No 117
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=32.87 E-value=39 Score=21.85 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcCCC
Q 011548 280 ATAVGVTTTTLFYIMCGVMGYLAFGND 306 (483)
Q Consensus 280 ~~~~a~~~~~~~Y~~~g~~gy~~fg~~ 306 (483)
+..++..+..++-.+.|..-|.+||..
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 445666777777778888889999854
No 118
>CHL00020 psbN photosystem II protein N
Probab=30.60 E-value=37 Score=21.93 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhcCCC
Q 011548 280 ATAVGVTTTTLFYIMCGVMGYLAFGND 306 (483)
Q Consensus 280 ~~~~a~~~~~~~Y~~~g~~gy~~fg~~ 306 (483)
+..+++.+..++..+.|..-|.+||..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 455667777777778888888899954
No 119
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=30.33 E-value=1.9e+02 Score=29.25 Aligned_cols=86 Identities=12% Similarity=0.071 Sum_probs=55.8
Q ss_pred HHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCch
Q 011548 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (483)
Q Consensus 110 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l 189 (483)
+..+|.++..++.+++++..+.+.+++.......+..+.+. .. ....+-++. +++.++....+++.+
T Consensus 300 ~~~~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~~~---------~~---~~~~~ri~~-i~~~~~G~~~~~~~v 366 (416)
T PF01235_consen 300 STVLGSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLFGG---------KK---AIWIYRILF-IAMVFIGAVIDLDLV 366 (416)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------ce---EEEeeeehh-hhhhhhhhcccchhH
Confidence 34578889999999999999999999999999999888721 00 011122222 222333334456777
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 011548 190 SWLSILAAVMSFAYSSIGI 208 (483)
Q Consensus 190 ~~~s~~~~~~~~~~~~i~i 208 (483)
.-++-+.+.++.+.-++.+
T Consensus 367 W~~~Di~~~lmai~Nlial 385 (416)
T PF01235_consen 367 WDLADIANGLMAIPNLIAL 385 (416)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777766665544443
No 120
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=30.12 E-value=54 Score=29.17 Aligned_cols=31 Identities=23% Similarity=0.149 Sum_probs=25.3
Q ss_pred hHHHHHHhhhhhhhhhhhhhhHHHHHHHhCC
Q 011548 405 FNDFVGLIGAASFWPLTVYFPVEMYIARTKI 435 (483)
Q Consensus 405 ~~~v~~~~Gs~~~~~~~~ilP~l~~~~~~~~ 435 (483)
++.-.-+.|++.+.-+..++|+.+.+..+++
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~ 73 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKR 73 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCC
Confidence 4445567788888999999999999998876
No 121
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=29.28 E-value=7.8e+02 Score=26.85 Aligned_cols=55 Identities=13% Similarity=0.162 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhcCccchHhhHhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhh
Q 011548 242 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLA 302 (483)
Q Consensus 242 ~~~~a~~~~~faf~~~~~i~~i~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~ 302 (483)
..+..+|.++.+..|...+ +.+|-+-.+ +.++ ..+..+..-+.+---+|-..|+.
T Consensus 239 ~~~~~LG~V~L~iTGaEAL---yADmGHFg~--~~Ir-~aw~~~V~P~L~LnY~GQgA~ll 293 (688)
T TIGR00794 239 VGWVSLGGVVLSITGVEAM---FADLGHFGK--LPIQ-LAWFTFVYPSLILCYIGQAAYLS 293 (688)
T ss_pred ceeeeccchhheeccHhhh---hcccCCCCc--ccce-eehHHHHHHHHHHHHcchHHHHh
Confidence 3456788888888887765 677766541 3333 33443333333333344444554
No 122
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=27.40 E-value=1.4e+02 Score=27.34 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=32.9
Q ss_pred HHHHHHHHcCchHHHHHH---------hhhhhhhhhhhhhhHHHHHHHhCCCc--c---hHHHHHHHHHHHHHHHHHHHH
Q 011548 394 VSAVLAMIFPFFNDFVGL---------IGAASFWPLTVYFPVEMYIARTKIRR--F---SFTWVWLKILIWSCFIVSLVA 459 (483)
Q Consensus 394 ~~~~~a~~~p~~~~v~~~---------~Gs~~~~~~~~ilP~l~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~v~g 459 (483)
..+++|..++.++-++.+ -|+.++..+.++= |+...+... . ...+|+.|+++++|+++.+-+
T Consensus 165 ~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~lr~ 240 (262)
T KOG4812|consen 165 WAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLLFLRG 240 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHHHHHH
Confidence 334444444444444433 4666666666554 333333211 1 123556677777777776665
Q ss_pred HH
Q 011548 460 LV 461 (483)
Q Consensus 460 ~~ 461 (483)
++
T Consensus 241 ~i 242 (262)
T KOG4812|consen 241 FI 242 (262)
T ss_pred HH
Confidence 54
No 123
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=27.00 E-value=3.4e+02 Score=22.92 Aligned_cols=68 Identities=9% Similarity=0.095 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCcccccccCcCCchHHHHHHHHHHHHHHHHhhhccccch
Q 011548 275 KSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPI 346 (483)
Q Consensus 275 ~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 346 (483)
|+..|.+....-....+-..+|+..-..+.++.. + .|+-+ ...|......+++.++.+..+..+.+|.
T Consensus 37 k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~--~-~hf~S-lHswlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (143)
T cd08763 37 KRSTKILHGLLHIMALVISLVGLVAVFDYHQANG--Y-PDMYS-LHSWCGILTFVLYFLQWLIGFSFFLFPG 104 (143)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHccccC--C-Ccccc-HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5666778888888888888888887766655532 2 23321 3678888888889999999988877774
No 124
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=25.54 E-value=5.6e+02 Score=23.93 Aligned_cols=37 Identities=5% Similarity=0.018 Sum_probs=25.3
Q ss_pred HhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCC
Q 011548 264 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGN 305 (483)
Q Consensus 264 ~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~ 305 (483)
.+.+++| +++|.+.....+..++|...-..+.-.+++
T Consensus 18 ~~~l~~P-----~lr~~~liPl~inllLf~~~l~~~~~~~~~ 54 (251)
T PRK04949 18 WKLILQP-----GLRRFVILPLLVNILLFGGAFWWLFTQLDA 54 (251)
T ss_pred HHHhcCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554 689999999988888887665444444443
No 125
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.72 E-value=2.3e+02 Score=20.57 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhccccccCc
Q 011548 447 ILIWSCFIVSLV-ALVGSVQGLIQSLKTYKPFQ 478 (483)
Q Consensus 447 ~~~~~~~~~~v~-g~~~~i~~l~~~~~~~~~f~ 478 (483)
.+++++++.|++ |++.+-+..-..++++.|-.
T Consensus 8 l~ivl~ll~G~~~G~fiark~~~k~lk~NPpin 40 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQMKKQLKDNPPIN 40 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 455666666644 77788888888888887753
No 126
>PRK09928 choline transport protein BetT; Provisional
Probab=24.55 E-value=4.8e+02 Score=28.34 Aligned_cols=69 Identities=6% Similarity=-0.081 Sum_probs=45.6
Q ss_pred hhhHHHHHHHhhhhHHHHHhhcccccCC-CCcccccCCcchhHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 011548 130 IGVTIGYTITASISMVAVKRSNCFHRHG-HHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAV 198 (483)
Q Consensus 130 ~g~~~~y~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~~~s~~~~~ 198 (483)
...+..+++...|.....+...+.+... +.++..+.+.+|.++..++...+.....++.++..+.++.+
T Consensus 416 ~il~~iFfvTSaDS~s~Vla~lts~g~~~~~~pp~~~RifW~v~ig~la~~LL~~GGL~aLQt~sii~al 485 (679)
T PRK09928 416 TITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMGL 485 (679)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHcCCCCCCCCCCcceeeHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4455667888888888777665544331 12333566778888888877777777777777777766544
No 127
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=24.26 E-value=2.7e+02 Score=24.05 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=33.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCccccccc
Q 011548 273 ENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGF 315 (483)
Q Consensus 273 ~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~ 315 (483)
.|++.++++...+....++=+.+|-.-...||+...+|.-.|+
T Consensus 11 YRk~~n~v~~~~v~~lai~sl~~s~llI~lFg~~~~~nf~~Nl 53 (165)
T PF11286_consen 11 YRKHLNRVIVACVASLAILSLAFSQLLIALFGGESGGNFHWNL 53 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeeeH
Confidence 3477777777777777777788888889999987777777775
No 128
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=21.79 E-value=2e+02 Score=24.22 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011548 441 TWVWLKILIWSCFIVSLVALVGSVQ 465 (483)
Q Consensus 441 ~~~~~~~~~~~~~~~~v~g~~~~i~ 465 (483)
++..++.+-.++++++++|.+..++
T Consensus 40 ~k~~H~~L~~la~~~~~~Gl~av~~ 64 (143)
T cd08763 40 TKILHGLLHIMALVISLVGLVAVFD 64 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777766543
No 129
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=21.26 E-value=6.6e+02 Score=23.24 Aligned_cols=82 Identities=12% Similarity=0.139 Sum_probs=59.4
Q ss_pred cchHhhHhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCcccccccCcCCchHHHHHHHHHHHHHHHH
Q 011548 258 TVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIG 337 (483)
Q Consensus 258 ~~i~~i~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~ 337 (483)
....-+++--++.+ |+.+|.+....=++.+.-.++|+.....+-+... +.+-+. -++|....+-.++..+-..
T Consensus 71 GeAiL~YR~~r~~~---k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~--i~NfyS--LHSWlGl~~v~ly~~Q~v~ 143 (245)
T KOG1619|consen 71 GEAILIYRVFRYTS---KKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG--IANFYS--LHSWLGLCVVILYSLQWVF 143 (245)
T ss_pred cceeeeeehhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--ccceee--HHHHHHHHHHHHHHHHHHH
Confidence 33344555544433 8999999999999999999999999888876665 222222 3689888888888888888
Q ss_pred hhhccccch
Q 011548 338 AYQVFCQPI 346 (483)
Q Consensus 338 s~pl~~~p~ 346 (483)
.+-.+.+|.
T Consensus 144 GF~tfl~pg 152 (245)
T KOG1619|consen 144 GFFTFLFPG 152 (245)
T ss_pred HHHHHhcCC
Confidence 887776663
No 130
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.21 E-value=3.6e+02 Score=21.19 Aligned_cols=16 Identities=0% Similarity=0.023 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 011548 446 KILIWSCFIVSLVALV 461 (483)
Q Consensus 446 ~~~~~~~~~~~v~g~~ 461 (483)
..++++|+..|+...+
T Consensus 78 l~~lllGv~~G~~n~w 93 (100)
T TIGR02230 78 LTMLIVGVVIGCLNAW 93 (100)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344555555544443
No 131
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=20.81 E-value=4.4e+02 Score=23.11 Aligned_cols=53 Identities=11% Similarity=0.023 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHc-CchHHHHHHhhhhhhhhhhhhhhHHHHHHHhC
Q 011548 382 SFRLVWRTAYVIVSAVLAMIF-PFFNDFVGLIGAASFWPLTVYFPVEMYIARTK 434 (483)
Q Consensus 382 ~~~~~~~~~~~~~~~~~a~~~-p~~~~v~~~~Gs~~~~~~~~ilP~l~~~~~~~ 434 (483)
+++-=.|.++.+..+++|+.- |-+..++=.+.|+....-+.++-..+++...+
T Consensus 57 l~~nDir~LiglIlFVLAl~s~p~ialimi~iAs~llP~PsLVIaYCl~mqi~~ 110 (189)
T PF05313_consen 57 LMNNDIRSLIGLILFVLALTSTPLIALIMIIIASLLLPFPSLVIAYCLSMQIYN 110 (189)
T ss_pred HhcccHHHHHHHHHHHHhccCccHHHHHHHHHHHHHcCccHHHHHHHHHheeec
Confidence 455568888999999999997 45666666555555444444443334444433
Done!