Query 011548
Match_columns 483
No_of_seqs 141 out of 1573
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 10:26:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.8 1.2E-18 4E-23 177.3 26.1 367 31-437 5-380 (445)
2 3gia_A Uncharacterized protein 99.7 6.6E-15 2.3E-19 149.5 28.2 356 32-437 4-370 (444)
3 4djk_A Probable glutamate/gamm 99.6 1.5E-13 5.1E-18 142.0 27.2 362 29-433 6-393 (511)
4 2jln_A MHP1; hydantoin, transp 98.7 6E-07 2E-11 91.8 20.6 245 31-302 22-277 (501)
5 3dh4_A Sodium/glucose cotransp 98.3 0.00022 7.4E-09 73.3 27.0 155 33-208 19-175 (530)
6 2xq2_A Sodium/glucose cotransp 98.0 0.0013 4.6E-08 68.4 25.0 155 33-208 48-204 (593)
7 2a65_A Leutaa, Na(+):neurotran 92.8 9 0.00031 38.6 27.8 256 36-305 9-308 (519)
8 3l1l_A Arginine/agmatine antip 19.3 5.8E+02 0.02 24.1 13.4 49 103-151 260-308 (445)
9 3gia_A Uncharacterized protein 17.2 3.9E+02 0.013 25.4 8.5 50 104-153 259-308 (444)
10 4ain_A Glycine betaine transpo 13.3 9.6E+02 0.033 23.9 10.2 168 29-211 89-284 (539)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.83 E-value=1.2e-18 Score=177.26 Aligned_cols=367 Identities=11% Similarity=-0.007 Sum_probs=223.7
Q ss_pred CccccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHH
Q 011548 31 RAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (483)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~ 110 (483)
+++|+.+.++.+...+++++|+|++.+|....+.|. .+++.+++.++........+.|...+. |+.| +..+..+
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~-p~~G----g~y~~~~ 78 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLD-PSPG----GSYAYAR 78 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHC-CCTT----THHHHHH
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccC-CCCC----CchhhHH
Confidence 356789999999999999999999999998888886 478889999999999999998877653 3322 5666778
Q ss_pred HHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchh
Q 011548 111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLS 190 (483)
Q Consensus 111 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~ 190 (483)
+.+||+.+++..+..++.......++....++++..+.+.. . . .+....+.++ .+++.-..-.+..+...
T Consensus 79 ~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~--~~~~~~~~~~-~~~~~~~in~~g~~~~~ 148 (445)
T 3l1l_A 79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL------K-D--PWVLTITCVV-VLWIFVLLNIVGPKMIT 148 (445)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG------G-S--HHHHHHHHHH-HHHHHHHHHHHCHHHHH
T ss_pred hHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc------c-c--cHHHHHHHHH-HHHHHHHHHHhchHHHH
Confidence 99999999999999988877777777777777665443210 0 0 0101111111 11122222234566666
Q ss_pred HHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhhcccC
Q 011548 191 WLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSS 270 (483)
Q Consensus 191 ~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~~ 270 (483)
.++.+.....+...+++++..+..... ..... .+ +.....+..+++.++...+|+|.|.+.+....+|+|||
T Consensus 149 ~~~~~~~~~~i~~~~~~~i~~~~~~~~-~~~~~---~~----~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p 220 (445)
T 3l1l_A 149 RVQAVATVLALIPIVGIAVFGWFWFRG-ETYMA---AW----NVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP 220 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCCC-CCCCC---C---------------HHHHHHHHHHTTTTTTHHHHGGGGBSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCh-hhccc---cc----CccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc
Confidence 666555555444444333333322211 10000 11 11111234577889999999999999999999999998
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCc----ccccccCcCCchHHHHHHHHHHHHHHHHhhhccccch
Q 011548 271 PPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPG----NFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPI 346 (483)
Q Consensus 271 ~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~----~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 346 (483)
+ |+.+|++..+..++.++|++..+......+.+... +...-+.....++...+..+...+..+.+.....+..
T Consensus 221 ~---r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (445)
T 3l1l_A 221 K---RNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLA 297 (445)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred c---ccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 88999999999999999999888877777644221 1111111011234555666667777776666555555
Q ss_pred HHHHHHHhh-hhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHc----CchHHHHHHhhhhhhhhhh
Q 011548 347 FGFVEKWCN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIF----PFFNDFVGLIGAASFWPLT 421 (483)
Q Consensus 347 ~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----p~~~~v~~~~Gs~~~~~~~ 421 (483)
.+.+..+-. +..| +...+.++.+.| .........+... +.+.... ..++.+.++.+. +..+.
T Consensus 298 sR~~~~~a~dg~lP--~~~~~~~~~~~P--------~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~--~~~~~ 364 (445)
T 3l1l_A 298 GQTAKAAADDGLFP--PIFARVNKAGTP--------VAGLIIVGILMTI-FQLSSISPNATKEFGLVSSVSVI--FTLVP 364 (445)
T ss_dssp HHHHHHHHHTTSSC--GGGGCCCTTCCC--------HHHHHHHHHHHHH-HHHSTTSHHHHCCCHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHhCCCCc--HHHHhcCCCCCC--------HHHHHHHHHHHHH-HHHHHHcccHHHHHHHHHHHHHH--HHHHH
Confidence 555555442 2334 223333333444 3333332222221 1111112 336777776553 34788
Q ss_pred hhhhHHHHHHHhCCCc
Q 011548 422 VYFPVEMYIARTKIRR 437 (483)
Q Consensus 422 ~ilP~l~~~~~~~~~~ 437 (483)
|.++.+.+++.+++++
T Consensus 365 y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 365 YLYTCAALLLLGHGHF 380 (445)
T ss_dssp HHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHhhcCc
Confidence 9999999998876554
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.70 E-value=6.6e-15 Score=149.45 Aligned_cols=356 Identities=8% Similarity=0.017 Sum_probs=214.0
Q ss_pred ccccCcHHHHHHHHHHhhhhHhhhHHHH-HHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHH
Q 011548 32 AKRTGTWVTASAHIITAVIGSGVLSLAW-AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (483)
Q Consensus 32 ~~~~~s~~~~~~~li~~~iG~GiL~LP~-~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~ 110 (483)
++|+.+.++..+..+++++|+|++.+|. +....|. ..++.+++.+++.......+.|...+. |+.| ...+.++
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~-P~~G----g~y~~~~ 77 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKI-VSNA----GPIAFIH 77 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTC-CCTT----THHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCC----cHHHhHH
Confidence 5688999999999999999999998774 4556665 688889999999999999999977764 3322 4666778
Q ss_pred HHhCCcc-eeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchh-HHH--HHHHHHhhcCCCC
Q 011548 111 ASLGGRS-VQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLM-IIF--ACIQIVLSQIPNF 186 (483)
Q Consensus 111 ~~~G~~~-~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~i~~pl~~~~~l 186 (483)
+.+||+. ...+.+..++........+....++++..+.+. .+..++. ++. .+++.-+.-.+..
T Consensus 78 ~~~G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~in~~g~ 144 (444)
T 3gia_A 78 KAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINA-------------PINTFNIAITEIGIVAFFTALNFFGS 144 (444)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------CCCHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCchHHHHHHHHHHHHHHHHHHHHhH
Confidence 8999972 223356666666667777777888887766531 0111121 111 1112222223455
Q ss_pred CchhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHHHHhhcCccchHhhHhh
Q 011548 187 HKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDT 266 (483)
Q Consensus 187 ~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~e 266 (483)
+....++.+.....+...+++++.++..... .+..+ + ..+..+.+++.++....|+|.|.+.+....+|
T Consensus 145 ~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~-----~~~~~-----~-~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e 213 (444)
T 3gia_A 145 KAVGRAEFFIVLVKLLILGLFIFAGLITIHP-----SYVIP-----D-LAPSAVSGMIFASAIFFLSYMGFGVITNASEH 213 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCG-----GGTSC-----C-CSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh-----hhcCC-----C-CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 6666666555554444433333333332211 11110 0 11233456788899999999999999999999
Q ss_pred cccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCC----Cc-ccccccCcCCchHHHHHHHHHHHHHHHHhhhc
Q 011548 267 LKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA----PG-NFLTGFGFYEPFWLVDFANACIAVHLIGAYQV 341 (483)
Q Consensus 267 m~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~----~~-~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl 341 (483)
+|||+ |+.+|++..+..++.++|++..+......+.+. ++ ..........+++...+..+...+..+.+..-
T Consensus 214 ~k~P~---r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~ 290 (444)
T 3gia_A 214 IENPK---KNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNA 290 (444)
T ss_dssp BSSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99995 789999999999999999988877666554321 01 01100100012344445566666666666665
Q ss_pred cccchHHHHHHHhh-hhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhhhhhhhh
Q 011548 342 FCQPIFGFVEKWCN-KRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPL 420 (483)
Q Consensus 342 ~~~p~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~v~~~~Gs~~~~~~ 420 (483)
......+.+..+-. +..|+ ...+.++ +.| ....... .+.+.+++.. .+++.+.++.+.. ..+
T Consensus 291 ~~~~~sR~l~a~a~dg~lP~--~f~~~~~-~~P--------~~a~~~~---~~~~~~~~~~-~~~~~l~~~~~~~--~~~ 353 (444)
T 3gia_A 291 TIYGGANVAYSLAKDGELPE--FFERKVW-FKS--------TEGLYIT---SALGVLFALL-FNMEGVASITSAV--FMV 353 (444)
T ss_dssp HHTTTHHHHHHHHHHSSCCS--SCCTTSC-CSC--------THHHHHH---HHHHHHHHHH-SCHHHHHHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHCCCCCH--HHhCCCC-CCC--------cHHHHHH---HHHHHHHHHH-cCHHHHHHHHHHH--HHH
Confidence 55555555554443 23342 1222221 123 2222222 2222233333 3678877775543 478
Q ss_pred hhhhhHHHHHHHhCCCc
Q 011548 421 TVYFPVEMYIARTKIRR 437 (483)
Q Consensus 421 ~~ilP~l~~~~~~~~~~ 437 (483)
.|.++.+.+++.+++++
T Consensus 354 ~~~~~~~~~~~~r~~~~ 370 (444)
T 3gia_A 354 IYLFVILSHYILIDEVG 370 (444)
T ss_dssp HHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHhhhcCC
Confidence 88888888888765443
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.62 E-value=1.5e-13 Score=142.03 Aligned_cols=362 Identities=10% Similarity=0.005 Sum_probs=194.2
Q ss_pred CCCccccCcHHHHHHHHHHhhhhHhhhHHHHHHHhhChhHHHHHHHHHHHHHH-HHHHHHHhccc--CCCCcCCCCcCcH
Q 011548 29 DGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITY-YTSTLLSDCYR--SPDPVTGKRNYTY 105 (483)
Q Consensus 29 ~~~~~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~~~-~t~~~l~~~~~--~~~~~~~~~~~~y 105 (483)
+++.+|+.+.++.+...+++++| +.++|. .+..|. ..++..++.+++.. .....+.|... .. | .| ..
T Consensus 6 ~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~-~~~~~~~i~~~~~~l~~al~~ael~s~~~~-P-~G----G~ 75 (511)
T 4djk_A 6 QTGKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGF-SLVFFLLLGGILWFIPVGLCAAEMATVDGW-E-EG----GV 75 (511)
T ss_dssp ------CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTT-HHHHHHHHHHHHTHHHHHHHHHHHHTTSCC---------CH
T ss_pred cCccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHcccccC-C-CC----Ch
Confidence 34557889999999999999986 667775 455664 34444444444433 36777777666 53 3 33 45
Q ss_pred HHHHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCc-chh-HHHHHHHHHhhcC
Q 011548 106 MDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNN-PLM-IIFACIQIVLSQI 183 (483)
Q Consensus 106 ~~~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~pl~~~ 183 (483)
...+++.+||+.+++..+..++.......++....++.+..+... +. ...+.. .+. .+..+++.-+.-.
T Consensus 76 y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~------~~~~~~~~~~~~~~~~~~~~~in~ 146 (511)
T 4djk_A 76 FAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKW---PA------LNEDPITKTIAALIILWALALTQF 146 (511)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTC---GG------GTSCSSHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---cc------cccCcHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999988888777777777766666543210 00 000111 111 1111112222223
Q ss_pred CCCCchhHHHHHHHHH-HHHHHHHhhheeeeeecCCCCCc--cccccccccccCCchhhHhHHHHHHHHHHHhhcCccch
Q 011548 184 PNFHKLSWLSILAAVM-SFAYSSIGIGLSIAKVIGDGPHA--TTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVL 260 (483)
Q Consensus 184 ~~l~~l~~~s~~~~~~-~~~~~~i~i~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i 260 (483)
+..+....++.+.... .+...+++++.++.....+++.. .+.... .+.....+.+.++...+|+|.|....
T Consensus 147 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~G~e~~ 220 (511)
T 4djk_A 147 GGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTF------FPDFSKVGTLVVFVAFILSYMGVEAS 220 (511)
T ss_dssp TCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CC------CCCTTSTTTTTTHHHHHHHHTTGGGG
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccc------CCCcccchHHHHHHHHHHHHhhHHHH
Confidence 4566666665554333 22112222222222211111100 011111 01111123445678889999999999
Q ss_pred HhhHhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCCcc---cc----cccCcCC--chHHHHHHHHHH
Q 011548 261 VEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGN---FL----TGFGFYE--PFWLVDFANACI 331 (483)
Q Consensus 261 ~~i~~em~~~~~~~~~~~~~~~~a~~~~~~~Y~~~g~~gy~~fg~~~~~~---il----~~~~~~~--~~~~~~~~~~~~ 331 (483)
....+|+|||+ |+++|++..+..++.++|++..+......+++.... .. .-+.... ..+...+..+..
T Consensus 221 ~~~a~E~k~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 297 (511)
T 4djk_A 221 ATHVNEMSNPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALL 297 (511)
T ss_dssp TGGGSSSSCCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHH
T ss_pred HHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 99999999996 899999999999999999998888777776543211 10 0011112 245666777777
Q ss_pred HHHHHHhhhccccchHHHHHHHh-hhhCCCCccccCCCCccCCCCCcccchhHHHHHHHHHHHHHHHHHHHcCc------
Q 011548 332 AVHLIGAYQVFCQPIFGFVEKWC-NKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPF------ 404 (483)
Q Consensus 332 ~i~~~~s~pl~~~p~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~------ 404 (483)
.+..+.+.........+.+..+- ++..|+ +..+.++.+.| ......... ...++...+++
T Consensus 298 ~~~~~~~~~~~~~~~sR~l~a~ardg~lP~--~~~~~~~~~~P--------~~ai~~~~~---~~~l~~~~~~~~~~~~~ 364 (511)
T 4djk_A 298 LLGVLAEIASWIVGPSRGMYVTAQKNLLPA--AFAKMNKNGVP--------VTLVISQLV---ITSIALIILTNTGGGNN 364 (511)
T ss_dssp HHHHHHHHHHHTTHHHHHTCHHHHGGGCSS--SCCCCCSSSCC--------CHHHHHHHH---HHHHHHHHHHSSSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCcccH--HHHhcCCCCCc--------HHHHHHHHH---HHHHHHHHhccccchHH
Confidence 77777766555544444444333 234452 23333333445 223333211 11122223333
Q ss_pred --hHHHHHHhhhhhhhhhhhhhhHHHHHHHh
Q 011548 405 --FNDFVGLIGAASFWPLTVYFPVEMYIART 433 (483)
Q Consensus 405 --~~~v~~~~Gs~~~~~~~~ilP~l~~~~~~ 433 (483)
++.+.++.+. +..+.|.+|.+.+++.+
T Consensus 365 ~~f~~l~~~~~~--~~~~~y~~~~~~~~~~r 393 (511)
T 4djk_A 365 MSFLIALALTVV--IYLCAYFMLFIGYIVLV 393 (511)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 4555555443 34677788876665543
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.75 E-value=6e-07 Score=91.79 Aligned_cols=245 Identities=13% Similarity=0.048 Sum_probs=138.1
Q ss_pred CccccCcHHHHHHHHHHhhhhHhhhHHHHHHHh-hChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHH
Q 011548 31 RAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQ-LGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (483)
Q Consensus 31 ~~~~~~s~~~~~~~li~~~iG~GiL~LP~~f~~-~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~ 109 (483)
+++|+.++++-+..-.+..++.+.+.+...+.. .++..+++.+++..++...-..+......+. + .++.++.
T Consensus 22 ~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~----G---l~~~v~~ 94 (501)
T 2jln_A 22 YAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRW----G---INFTVAA 94 (501)
T ss_dssp GGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHH----C---CCHHHHT
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhc----C---CChhhhh
Confidence 345667888777777777777777777655443 3455566666666655554444444433322 2 3699999
Q ss_pred HHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccC-CcchhHHHHHHHHHhhcCCCCCc
Q 011548 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTS-NNPLMIIFACIQIVLSQIPNFHK 188 (483)
Q Consensus 110 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~pl~~~~~l~~ 188 (483)
|..||+++..+..+...+..+|.........++.+...+.... ..+ .....++..++.+++. ....+.
T Consensus 95 R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~----------g~~~~~v~~~i~~~l~~~~~-~~G~~~ 163 (501)
T 2jln_A 95 RMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT----------GFTNLPLWIVIFGAIQVVTT-FYGITF 163 (501)
T ss_dssp TTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHHHH-TTHHHH
T ss_pred HhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CcchHHHHHHHHHHHHHHHH-HhCHHH
Confidence 9999999999999999999999888888888888888764210 011 1234455555666665 445677
Q ss_pred hhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCccccccccccccCCchhhHhHHHHHHHHH-HHhhcCccchHhhHhhc
Q 011548 189 LSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDV-AFAYAFSTVLVEIQDTL 267 (483)
Q Consensus 189 l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~faf~~~~~i~~i~~em 267 (483)
+++++.+.....++.++.+.+..+.+. +...++.... ++....+.+..++... .+.-....+.++..+++
T Consensus 164 i~~~~~~~~p~~~i~~i~~~~~~l~~~---g~~~~~~~~~------~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~ 234 (501)
T 2jln_A 164 IRWMNVFASPVLLAMGVYMVYLMLDGA---DVSLGEVMSM------GGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKEC 234 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---TCCHHHHTTC------CCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc---CCcchhhhcc------CCccchHHHHHHHHHHHHHHHHHHhccCcccccC
Confidence 777777766555544443333222221 1000000000 0001122343433331 22224447789999999
Q ss_pred ccCCc-chhh-------hHHHHHHHHHHHHHHHHHHHhHHHhh
Q 011548 268 KSSPP-ENKS-------MKRATAVGVTTTTLFYIMCGVMGYLA 302 (483)
Q Consensus 268 ~~~~~-~~~~-------~~~~~~~a~~~~~~~Y~~~g~~gy~~ 302 (483)
|+++. .+++ .......+..+...+..++|+.....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~ 277 (501)
T 2jln_A 235 KVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVL 277 (501)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98732 0111 33334445555555555566543333
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.35 E-value=0.00022 Score=73.34 Aligned_cols=155 Identities=9% Similarity=0.108 Sum_probs=83.8
Q ss_pred cccCcHHHHHHHHHHhhhhHh-hhHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHH
Q 011548 33 KRTGTWVTASAHIITAVIGSG-VLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (483)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~G-iL~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~ 111 (483)
.|+.+++...+.+..+.+++. .+++|-.....|+......+.. ++........+....++.+ ..|..|.-++
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~~~------~~T~~e~l~~ 91 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIEKG------IYTIPEFVEK 91 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHHTT------CCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHHcC------CccHHHHHHH
Confidence 367788888888887777665 4789988778887543221111 1111112222222233222 5699999999
Q ss_pred HhCCcceeehhhhHHH-HhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchh
Q 011548 112 SLGGRSVQLCGLAQYG-NLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLS 190 (483)
Q Consensus 112 ~~G~~~~~i~~~~~~~-~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~ 190 (483)
-||++.+.+..+...+ +.+..+.+.+...+..++.+. .++....+++.+++.......-.++...
T Consensus 92 Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~--------------Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~ 157 (530)
T 3dh4_A 92 RFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL--------------GIPLMYSILGLALFALVYSIYGGLSAVV 157 (530)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------------TCCHHHHHHHHHHHHHHTTC------CC
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------CCCHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 9999888776654433 223333333334444454443 2223334455555556666667788888
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011548 191 WLSILAAVMSFAYSSIGI 208 (483)
Q Consensus 191 ~~s~~~~~~~~~~~~i~i 208 (483)
+...+-.+.++...+++.
T Consensus 158 ~TD~iQ~~im~~g~~~v~ 175 (530)
T 3dh4_A 158 WTDVIQVFFLVLGGFMTT 175 (530)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888777766655444443
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.02 E-value=0.0013 Score=68.42 Aligned_cols=155 Identities=9% Similarity=0.111 Sum_probs=83.1
Q ss_pred cccCcHHHHHHHHHHhhhhHhh-hHHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCCCcCcHHHHHHH
Q 011548 33 KRTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (483)
Q Consensus 33 ~~~~s~~~~~~~li~~~iG~Gi-L~LP~~f~~~G~~~gii~li~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~y~~~~~~ 111 (483)
.|+.+++...+.+..+.+++.. ++.|-...+.|+......+.. ++........+..-.++.+ ..|..|..++
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~p~~~r~~------~~T~~e~l~~ 120 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIEKG------IYTIPEFVEK 120 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHH-HHHHHHHHHTHHHHHHHTT------CCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHhCC------CCCcHHHHHH
Confidence 3667888888888876666555 688877777886432221111 1111111222222223222 5699999999
Q ss_pred HhCCcceeehhhhHHH-HhhhhHHHHHHHhhhhHHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHhhcCCCCCchh
Q 011548 112 SLGGRSVQLCGLAQYG-NLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLS 190 (483)
Q Consensus 112 ~~G~~~~~i~~~~~~~-~~~g~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~~~~l~~l~ 190 (483)
-||++.+.+..+...+ ..+......+...+..++.+.. ++.....++.+++....+..-.++...
T Consensus 121 Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G--------------i~~~~~i~i~~~i~~~Yt~~GGl~av~ 186 (593)
T 2xq2_A 121 RFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALVYSIYGGLSAVV 186 (593)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHTTC---CC
T ss_pred HccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------ccHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 9999887666554332 2333333344445555655542 222334445555556666677788877
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011548 191 WLSILAAVMSFAYSSIGI 208 (483)
Q Consensus 191 ~~s~~~~~~~~~~~~i~i 208 (483)
+...+-.+.++...+++.
T Consensus 187 ~TD~iQ~iiml~~~l~v~ 204 (593)
T 2xq2_A 187 WTDVIQVFFLVLGGFMTT 204 (593)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777666555444433
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=92.80 E-value=9 Score=38.60 Aligned_cols=256 Identities=11% Similarity=0.029 Sum_probs=118.9
Q ss_pred CcHHHHHHHHHHhhhhHh-hhHHHHHHHhhCh----hHHHHHHHHHHHHHHHHHHHHHhccc-CCCCcCCCCcCcHHHHH
Q 011548 36 GTWVTASAHIITAVIGSG-VLSLAWAIAQLGW----VAGPAVLMAFSFITYYTSTLLSDCYR-SPDPVTGKRNYTYMDVV 109 (483)
Q Consensus 36 ~s~~~~~~~li~~~iG~G-iL~LP~~f~~~G~----~~gii~li~~~~~~~~t~~~l~~~~~-~~~~~~~~~~~~y~~~~ 109 (483)
.|-..-++..+++.+|-| +.-.||-..+.|- ++=+++++++++=..+.=..+.|-.. +.+ .+-.+.-
T Consensus 9 ~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r-------~~~i~a~ 81 (519)
T 2a65_A 9 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGH-------GTTPAIF 81 (519)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTC-------CSHHHHH
T ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccC-------CCHHHHH
Confidence 455677888889999999 6889998766662 22233333333333333334444111 111 1222223
Q ss_pred HHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccc----cCCCCc-cc-------c----cCC-------
Q 011548 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFH----RHGHHV-KC-------Y----TSN------- 166 (483)
Q Consensus 110 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~----~~~~~~-~~-------~----~~~------- 166 (483)
++...++...-+.+...+..+..++-|.++.+-.+..+...+..+ ...+.+ .+ . .+.
T Consensus 82 ~~l~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~ 161 (519)
T 2a65_A 82 YLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPI 161 (519)
T ss_dssp HHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCB
T ss_pred HHhcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccc
Confidence 233222112234555555556666666666666666555432211 000000 00 0 000
Q ss_pred ---cchhH---HHHHHHHHhhcCCCC-CchhHHHHHHHHHHHHHHHHhhheeeeeecCCCCCcccccccc--ccccCCch
Q 011548 167 ---NPLMI---IFACIQIVLSQIPNF-HKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT--VGVDVSAS 237 (483)
Q Consensus 167 ---~~~~~---~~~~i~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~i~i~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~ 237 (483)
++..+ +.+.++.-++..|.+ +....++.+....-+...++++++++.. +++.....++.. ..||++.-
T Consensus 162 g~~~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltL---pGp~~~A~~Gl~~~~~Pd~s~L 238 (519)
T 2a65_A 162 LKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLL---ETPNGTAADGLNFLWTPDFEKL 238 (519)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTC---EETTEEHHHHHHHHHSCCTTST
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC---CCCchhHHHHHHHHhcCCHHHh
Confidence 12222 223334445667777 5577777776665554444444433321 110000111111 01122221
Q ss_pred hhHhHHHHHHHHHHHhhc-CccchHhhHhhcccCCcchhhhHHHHHHHHHHHHHHH-----HHHHhHHHhhcCC
Q 011548 238 EKVWRAFQAIGDVAFAYA-FSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFY-----IMCGVMGYLAFGN 305 (483)
Q Consensus 238 ~~~~~~~~a~~~~~faf~-~~~~i~~i~~em~~~~~~~~~~~~~~~~a~~~~~~~Y-----~~~g~~gy~~fg~ 305 (483)
.+..-...|.+.+.|+++ |...+...-+.+++. ++..|........-+..- ..++.+||.++|-
T Consensus 239 ~~~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~----~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~ 308 (519)
T 2a65_A 239 KDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKD----QDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGV 308 (519)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTT----SCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHHHhHHHHhHHhhhhcccCCC----cChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 111234678888899995 455555566666655 566665443333333332 2344456655553
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=19.32 E-value=5.8e+02 Score=24.08 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=42.6
Q ss_pred CcHHHHHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhc
Q 011548 103 YTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSN 151 (483)
Q Consensus 103 ~~y~~~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~ 151 (483)
....+..+..+|+++..++.+...+..+++..++....+..+....++.
T Consensus 260 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg 308 (445)
T 3l1l_A 260 SPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDG 308 (445)
T ss_dssp CTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3688899999999999999999999999999999999999888877653
No 9
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=17.20 E-value=3.9e+02 Score=25.38 Aligned_cols=50 Identities=6% Similarity=0.020 Sum_probs=39.2
Q ss_pred cHHHHHHHHhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhccc
Q 011548 104 TYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCF 153 (483)
Q Consensus 104 ~y~~~~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~ 153 (483)
...+..+..+|+++..++.+...+..+++..+.+...+..+....++...
T Consensus 259 ~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~l 308 (444)
T 3gia_A 259 ALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGEL 308 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSC
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 46677788888888888888888888888888888888888887765433
No 10
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=13.27 E-value=9.6e+02 Score=23.87 Aligned_cols=168 Identities=10% Similarity=-0.022 Sum_probs=0.0
Q ss_pred CCCccccCcHHHHHHHHHHhhhhHhhh-------------------------HHHHHHHhhChhHHHHHHHHHHHHHHHH
Q 011548 29 DGRAKRTGTWVTASAHIITAVIGSGVL-------------------------SLAWAIAQLGWVAGPAVLMAFSFITYYT 83 (483)
Q Consensus 29 ~~~~~~~~s~~~~~~~li~~~iG~GiL-------------------------~LP~~f~~~G~~~gii~li~~~~~~~~t 83 (483)
+++.++.-|.++-..-+..+-+|+|++ ++-+.|-+-|+-. +.+-...
T Consensus 89 ~~d~kPefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~--------WAiYav~ 160 (539)
T 4ain_A 89 RIDEAPEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHP--------WAIYAIV 160 (539)
T ss_dssp CTTCCCSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHH--------HHHHHHH
T ss_pred CCCCCCCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHH--------HHHHHHH
Q ss_pred HHHHHhcccCCCCcCCCCcCcHHHHHHH-HhCCcceeehhhhHHHHhhhhHHHHHHHhhhhHHHHHhhcccc-cCCCCcc
Q 011548 84 STLLSDCYRSPDPVTGKRNYTYMDVVRA-SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFH-RHGHHVK 161 (483)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~y~~~~~~-~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~~~~~~~~~~~~-~~~~~~~ 161 (483)
+..+....-+.+....-|..=|.=++++ .-|+.|+.+=.++++...+|...+.-....+.-.-+-..+..+ .
T Consensus 161 glalaY~~yrk~~pl~iss~l~PllG~r~~~G~~G~~IDilav~atv~GvatSLGlg~~Qi~~Gl~~lfGi~~~------ 234 (539)
T 4ain_A 161 GLAIAYSTFRVGRKQLLSSAFVPLIGEKGAEGWLGKLIDILAIIATVFGTACSLGLGALQIGAGLSAANIIEDP------ 234 (539)
T ss_dssp HHHHHCCCCCTCCCSCTTGGGHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCC------
T ss_pred HHHHHHHHhcCCCCCcHHHHhHhhcCCCccCCcchhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCCC------
Q ss_pred cccCCcchhHHHHHHHHHhhcCCCC-CchhHHHHHHHHHHHHHHHHhhhee
Q 011548 162 CYTSNNPLMIIFACIQIVLSQIPNF-HKLSWLSILAAVMSFAYSSIGIGLS 211 (483)
Q Consensus 162 ~~~~~~~~~~~~~~i~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~i~i~~~ 211 (483)
.......+++...+++-++....+ |..|++|.+-+.+.+.+++.+++.+
T Consensus 235 -~~~~qi~ii~vit~i~~~Sa~sGl~kGIk~LS~~N~~La~~Ll~fvli~G 284 (539)
T 4ain_A 235 -SDWTIVGIVSVLTLAFIFSAISGVGKGIQYLSNANMVLAALLAIFVFVVG 284 (539)
T ss_dssp -STTTTTHHHHHHHHHHHHHHHC---CCHHHHGGGHCCCCCHHHHHHHHHS
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Done!