BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011549
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b
pdb|3N9V|B Chain B, Crystal Structure Of Inpp5b
Length = 313
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/371 (32%), Positives = 184/371 (49%), Gaps = 76/371 (20%)
Query: 63 LRIFVGTWNVAGRSPVGSLAVDLDEWL-NLKDAADMYVLGFQEIVPLKARTVIGAEDPTE 121
R F GT+NV G+SP L + WL N A D+Y +GFQE+
Sbjct: 5 FRFFAGTYNVNGQSPKECLRL----WLSNGIQAPDVYCVGFQEL---------------- 44
Query: 122 ATNWNLLIGKTLNNKYGCPWLSPKFSQNISSDSYLLDTEMESSLSSRAKTPKKE-WWRTQ 180
++S +++ TPK+E W++
Sbjct: 45 ---------------------------DLSKEAFFFH-----------DTPKEEEWFKAV 66
Query: 181 SEKLYWGSKYKLMASKKMVGVLISVWIRRELLRKYCISNVKVCSVACGIMGYLGNKGSVS 240
SE L+ +KY + ++VG+++ +++++E IS V+ +V GIMG +GNKG V+
Sbjct: 67 SEGLHPDAKYAKVKLIRLVGIMLLLYVKQE--HAAYISEVEAETVGTGIMGRMGNKGGVA 124
Query: 241 VSMSIEGTSFCFVAAHLASGEKKGDEGRRNHQVSEIFKRTSFPRSPNDDDNPHPLTILGH 300
+ TS C V +HLA+ ++ + RRN +I R F + D + PLTI H
Sbjct: 125 IRFQFHNTSICVVNSHLAAHIEEYE--RRNQDYKDICSRMQFCQP---DPSLPPLTISNH 179
Query: 301 DQIFWFGDLNYRLY-LEDNLARHLIKKQDWRGLQEFDQLRREQEEGGVFQGWREGNIEFP 359
D I W GDLNYR+ L+ + LI+++D++ L +DQL+ + VF+G+ EG + F
Sbjct: 180 DVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQ 239
Query: 360 PTYKYSSSNCNRYSGGGPNRSGEKPRTPAWCDRILWYGKGVKQLSYFRSES-RFSDHRPV 418
PTYKY + G + EK R PAWCDRILW GK + QLSY + + SDH+PV
Sbjct: 240 PTYKYDT-------GSDDWDTSEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPV 292
Query: 419 SALFSTQVEVT 429
S++F V V
Sbjct: 293 SSVFDIGVRVV 303
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With
Phosphatidylinositol 4- Phosphate
Length = 313
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/371 (32%), Positives = 184/371 (49%), Gaps = 76/371 (20%)
Query: 63 LRIFVGTWNVAGRSPVGSLAVDLDEWL-NLKDAADMYVLGFQEIVPLKARTVIGAEDPTE 121
R F GT+NV G+SP L + WL N A D+Y +GFQE+
Sbjct: 8 FRFFAGTYNVNGQSPKECLRL----WLSNGIQAPDVYCVGFQEL---------------- 47
Query: 122 ATNWNLLIGKTLNNKYGCPWLSPKFSQNISSDSYLLDTEMESSLSSRAKTPKKE-WWRTQ 180
++S +++ TPK+E W++
Sbjct: 48 ---------------------------DLSKEAFFFH-----------DTPKEEEWFKAV 69
Query: 181 SEKLYWGSKYKLMASKKMVGVLISVWIRRELLRKYCISNVKVCSVACGIMGYLGNKGSVS 240
SE L+ +KY + ++VG+++ +++++E IS V+ +V GIMG +GNKG V+
Sbjct: 70 SEGLHPDAKYAKVKLIRLVGIMLLLYVKQE--HAAYISEVEAETVGTGIMGRMGNKGGVA 127
Query: 241 VSMSIEGTSFCFVAAHLASGEKKGDEGRRNHQVSEIFKRTSFPRSPNDDDNPHPLTILGH 300
+ TS C V +HLA+ ++ + RRN +I R F + D + PLTI H
Sbjct: 128 IRFQFHNTSICVVNSHLAAHIEEYE--RRNQDYKDICSRMQFCQP---DPSLPPLTISNH 182
Query: 301 DQIFWFGDLNYRLY-LEDNLARHLIKKQDWRGLQEFDQLRREQEEGGVFQGWREGNIEFP 359
D I W GDLNYR+ L+ + LI+++D++ L +DQL+ + VF+G+ EG + F
Sbjct: 183 DVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQ 242
Query: 360 PTYKYSSSNCNRYSGGGPNRSGEKPRTPAWCDRILWYGKGVKQLSYFRSES-RFSDHRPV 418
PTYKY + G + EK R PAWCDRILW GK + QLSY + + SDH+PV
Sbjct: 243 PTYKYDT-------GSDDWDTSEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPV 295
Query: 419 SALFSTQVEVT 429
S++F V V
Sbjct: 296 SSVFDIGVRVV 306
>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin
pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin In Complex With
Inositol (1,4)-Bisphosphate And Calcium Ion
Length = 347
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 161/377 (42%), Gaps = 76/377 (20%)
Query: 63 LRIFVGTWNVAGRSPVGSLAVDLDEWLNLKDA--ADMYVLGFQEIVPLKARTVIGAEDPT 120
++IFV ++N+ G S L+ WL ++ AD+YV+GFQEIV L + VI A DP
Sbjct: 25 VKIFVASYNLNG----CSATTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISA-DPA 79
Query: 121 EATNWNLLIGKTLNNKYGCPWLSPKFSQNISSDSYLLDTEMESSLSSRAKTPKKEWWRTQ 180
+ W + + LN K C
Sbjct: 80 KRREWESCVKRLLNGK--CTS--------------------------------------- 98
Query: 181 SEKLYWGSKYKLMASKKMVGVLISVWIRRELLRKYCISNVKVCSVACGIMGYLGNKGSVS 240
G Y + S ++VG + ++ + L I NV+ G+ G GNKG+V+
Sbjct: 99 ------GPGYVQLRSGQLVGTALMIFCKESCLPS--IKNVEGTVKKTGLGGVSGNKGAVA 150
Query: 241 VSMSIEGTSFCFVAAHLASGEKKGDEGRRNHQVSEIFKRTSFPRSPNDDDNPHPLTILGH 300
+ E T CF+ +HLA+G DE R+H I F R +I H
Sbjct: 151 IRFDYEDTGLCFITSHLAAGYTNYDE--RDHDYRTIASGLRFRRG---------RSIFNH 199
Query: 301 DQIFWFGDLNYRLYLEDNLARHLIKKQDWRGLQEFDQLRREQEEGGVFQGWREGNIEFPP 360
D + WFGD NYR+ L I + L E+DQL ++ G VF + E I FPP
Sbjct: 200 DYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPP 259
Query: 361 TYKYSSSNCNRYSGGGPNRSGEKPRTPAWCDRILWYGKGVKQLSYFRSESRFSDHRPVSA 420
TYK+ G + +K R PAW DRIL+ G+ V SY +SDHRP+ A
Sbjct: 260 TYKFDI-------GTDIYDTSDKHRVPAWTDRILYRGELVPH-SYQSVPLYYSDHRPIYA 311
Query: 421 LFSTQ-VEVTRSNPKAV 436
+ V+V R K +
Sbjct: 312 TYEANIVKVDREKKKIL 328
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 121/242 (50%), Gaps = 14/242 (5%)
Query: 190 YKLMASKKMVGVLISVWIRRELLRKYCISNVKVCSVACGIMGYLGNKGSVSVSMSIEGTS 249
Y+ +A + + + ++V ++ E + IS+V SV GI LGNKG+V VS GTS
Sbjct: 81 YRPIAMQSLWNIKVAVLVKPEHENR--ISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTS 138
Query: 250 FCFVAAHLASGEKKGDEGRRNHQVSEIFKRTSF-PRSPNDDDNPHPLTILGHDQIFWFGD 308
F FV HL SG +K RRN +I + S R N D L +FWFGD
Sbjct: 139 FGFVNCHLTSGNEK--TARRNQNYLDILRLLSLGDRQLNAFD-----ISLRFTHLFWFGD 191
Query: 309 LNYRLYLEDNLARHLIKKQDWRGLQEFDQLRREQEEGGVFQGWREGNIEFPPTYKYSSSN 368
LNYRL ++ + I ++++ L DQL E+E+ VF + E I FPPTY+Y +
Sbjct: 192 LNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGS 251
Query: 369 CNRYSGGGPNRSGEKPRTPAWCDRILWYGKGVKQL---SYFRSESRF-SDHRPVSALFST 424
+ Y+ +G + P+WCDRILW + SY ++ SDH PV F
Sbjct: 252 RDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEV 311
Query: 425 QV 426
V
Sbjct: 312 GV 313
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 135/271 (49%), Gaps = 25/271 (9%)
Query: 173 KKEWWRTQSEKLYWGSKYKLMASKKMVGVLISVWIRRELLRKYCISNVKVCSVACGIMGY 232
++EW E L G Y L++S + +S++IRR+L+ + S V+ +V I+
Sbjct: 72 RREWETRLQETL--GPHYVLLSSAAHGVLYMSLFIRRDLI--WFCSEVECSTVTTRIVSQ 127
Query: 233 LGNKGSVSVSMSIEGTSFCFVAAHLASGEKKGDEGRRNHQVSEIFKRTSFPRSPNDDDNP 292
+ KG++ +S + GTSF F+ +H SG+ K E R + + PR+ D NP
Sbjct: 128 IKTKGALGISFTFFGTSFLFITSHFTSGDGKVAE--RLLDYTRTVQALVLPRNVPDT-NP 184
Query: 293 HPLTILG----HDQIFWFGDLNYRLYLEDNLARHLIKKQ---DWRGLQEFDQLRREQEEG 345
+ + D++FWFGD N+RL + L+ + D L + DQL RE +G
Sbjct: 185 YRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRKG 244
Query: 346 GVFQGWREGNIEFPPTYKYSSSNCNRYSGGGPNRSGEKPRTPAWCDRILWYGK---GVKQ 402
+F+G++E +I F P+YK+ G S K RTP++ DR+L+ + +
Sbjct: 245 SIFKGFQEPDIHFLPSYKFD-------IGKDTYDSTSKQRTPSYTDRVLYRSRHKGDICP 297
Query: 403 LSYFRSES-RFSDHRPVSALFSTQVEVTRSN 432
+SY + SDHRPV LF +V R N
Sbjct: 298 VSYSSCPGIKTSDHRPVYGLFRVKVRPGRDN 328
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 65 IFVGTWNVAGRSPVGSLAVDLDEWL---NLKDAADMYVLGFQE 104
+FV TWN+ G+ L LDE+L A D+YV+G QE
Sbjct: 28 LFVATWNMQGQK---ELPPSLDEFLLPAEADYAQDLYVIGVQE 67
>pdb|1NTF|A Chain A, Crystal Structure Of Cimex Nitrophorin
pdb|1Y21|A Chain A, Crystal Structure Of Cimex Nitrophorin No Complex
pdb|1SI6|X Chain X, Crystal Structure Of Cimex Nitrophorin Complex With Co
pdb|1YJH|A Chain A, Crystal Structure Of Cimex Nitrophorin Ferrous No Complex
pdb|2IMQ|X Chain X, Crystal Structure Of Ferrous Cimex Nitrophorin
Length = 282
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 15/126 (11%)
Query: 301 DQIFWFGDLNYRLYLEDNLARHLIKKQDWRGLQEFDQLRREQEEGGVFQGWREGNIEFPP 360
D +FW GDLN R+ A+ L+ + + GL FDQL++ +E+ +F GW E + F P
Sbjct: 164 DFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKEQ-KLFDGWTEPQVTFKP 222
Query: 361 TYKYSSSNCNRYSGGGPNRSGEKPRTPAWCDRILW---YGKGVKQLSYFR-SESRFSDHR 416
TYK+ N + Y TP+W DR L+ GK ++ LSY + + ++HR
Sbjct: 223 TYKF-KPNTDEYDLSA---------TPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHR 272
Query: 417 PVSALF 422
PV A F
Sbjct: 273 PVLAKF 278
>pdb|1GN9|A Chain A, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
Atcc 27774 X-Ray Structure At 2.6a Resolution Using
Synchrotron Radiation At A Wavelength Of 1.722a
pdb|1GN9|B Chain B, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
Atcc 27774 X-Ray Structure At 2.6a Resolution Using
Synchrotron Radiation At A Wavelength Of 1.722a
Length = 544
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 381 GEKPRTPAWCDRILWYGKGVKQLSY-FRSESRFSDHR 416
G+KP T A D +++ KG+ Q++ R+E + DHR
Sbjct: 25 GKKPETAALQDALIYVTKGLGQIATRLRAEGKAVDHR 61
>pdb|1GNL|A Chain A, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
X-Ray Structure At 1.25a Resolution Using Synchrotron
Radiation At A Wavelength Of 0.933a
pdb|1GNL|B Chain B, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
X-Ray Structure At 1.25a Resolution Using Synchrotron
Radiation At A Wavelength Of 0.933a
pdb|1OA0|A Chain A, Reduced Hybrid Cluster Protein From Desulfovibrio
Desulfuricans X-Ray Structure At 1.25a Resolution
pdb|1OA0|B Chain B, Reduced Hybrid Cluster Protein From Desulfovibrio
Desulfuricans X-Ray Structure At 1.25a Resolution
pdb|1UPX|A Chain A, The Crystal Structure Of The Hybrid Cluster Protein From
Desulfovibrio Desulfuricans Containing Molecules In The
Oxidized And Reduced States.
pdb|1UPX|B Chain B, The Crystal Structure Of The Hybrid Cluster Protein From
Desulfovibrio Desulfuricans Containing Molecules In The
Oxidized And Reduced States
Length = 544
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 381 GEKPRTPAWCDRILWYGKGVKQLSY-FRSESRFSDHR 416
G+KP T A D +++ KG+ Q++ R+E + DHR
Sbjct: 25 GKKPETAALQDALIYVTKGLGQIATRLRAEGKAVDHR 61
>pdb|3N2T|A Chain A, Structure Of The Glycerol Dehydrogenase Akr11b4 From
Gluconobacter Oxydans
Length = 348
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 56 PCISTNKLRIFVGTWNVAG--------RSPVGSLAVDLDEWLNLKDAADMYVLGFQEIVP 107
P I T R+ +GTW + G + V ++ LDE +NL D A +Y G E +
Sbjct: 25 PGIDTPLSRVALGTWAIGGWMWGGPDDDNGVRTIHAALDEGINLIDTAPVYGFGHSEEIV 84
Query: 108 LKARTVIGAEDPTEA 122
+A AE P +A
Sbjct: 85 GRAL----AEKPNKA 95
>pdb|2P4V|A Chain A, Crystal Structure Of The Transcript Cleavage Factor, Greb
At 2.6a Resolution
pdb|2P4V|B Chain B, Crystal Structure Of The Transcript Cleavage Factor, Greb
At 2.6a Resolution
pdb|2P4V|C Chain C, Crystal Structure Of The Transcript Cleavage Factor, Greb
At 2.6a Resolution
pdb|2P4V|D Chain D, Crystal Structure Of The Transcript Cleavage Factor, Greb
At 2.6a Resolution
pdb|2P4V|E Chain E, Crystal Structure Of The Transcript Cleavage Factor, Greb
At 2.6a Resolution
pdb|2P4V|F Chain F, Crystal Structure Of The Transcript Cleavage Factor, Greb
At 2.6a Resolution
Length = 158
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 287 NDDDNPHPLTILGHDQIFWFGDLNYRLYLEDNLARHLIKKQ 327
NDD H I+G+D+I FG +Y + ++ +AR L+KK+
Sbjct: 95 NDDGVTHRFRIVGYDEI--FGRKDY-ISIDSPMARALLKKE 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,588,573
Number of Sequences: 62578
Number of extensions: 575280
Number of successful extensions: 984
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 948
Number of HSP's gapped (non-prelim): 24
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)