Query 011549
Match_columns 483
No_of_seqs 196 out of 1104
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 10:27:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 3.4E-90 1.2E-94 699.2 34.6 303 57-430 2-307 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 7.4E-87 2.5E-91 675.9 30.3 295 59-427 4-314 (316)
3 1i9z_A Synaptojanin, phosphati 100.0 7.1E-82 2.4E-86 648.5 30.5 322 47-442 10-333 (347)
4 2xsw_A 72 kDa inositol polypho 100.0 1.9E-79 6.5E-84 632.4 31.6 303 43-431 11-327 (357)
5 2imq_X Salivary nitrophorin; f 100.0 1.5E-64 5.3E-69 504.6 25.5 272 59-426 3-282 (282)
6 4gz1_A Tyrosyl-DNA phosphodies 99.5 1.2E-13 4.1E-18 129.5 16.6 66 231-312 97-162 (256)
7 3teb_A Endonuclease/exonucleas 99.5 1E-12 3.6E-17 125.1 17.4 62 233-313 120-181 (266)
8 4fva_A 5'-tyrosyl-DNA phosphod 99.4 2.6E-13 9E-18 127.5 10.9 67 233-312 103-169 (256)
9 4f1h_A Tyrosyl-DNA phosphodies 99.4 2.5E-12 8.5E-17 118.5 15.2 62 234-311 94-155 (250)
10 4gew_A 5'-tyrosyl-DNA phosphod 99.4 1.6E-12 5.5E-17 133.4 11.1 66 234-312 210-275 (362)
11 3g6s_A Putative endonuclease/e 99.3 6.8E-11 2.3E-15 113.6 15.7 139 234-424 114-260 (267)
12 1ako_A Exonuclease III; AP-end 99.2 1.6E-11 5.6E-16 116.9 8.0 66 234-312 87-155 (268)
13 1zwx_A SMCL, sphingomyelinase- 99.2 1.1E-10 3.7E-15 114.0 13.9 68 233-312 128-199 (301)
14 3l1w_A Uncharacterized protein 99.2 4.2E-10 1.4E-14 107.2 17.1 60 233-310 107-168 (257)
15 3mpr_A Putative endonuclease/e 99.2 2.6E-10 8.9E-15 112.3 13.6 60 234-310 118-180 (298)
16 3i41_A Beta-hemolysin; beta to 99.1 2.7E-10 9.2E-15 113.9 12.9 68 232-311 146-217 (317)
17 2jc4_A Exodeoxyribonuclease II 98.7 1.3E-08 4.5E-13 96.0 5.9 35 66-106 2-36 (256)
18 1vyb_A ORF2 contains A reverse 98.7 8.8E-08 3E-12 89.1 11.4 53 238-312 97-149 (238)
19 2a40_B Deoxyribonuclease-1; WA 98.6 5.3E-08 1.8E-12 93.8 6.2 26 236-261 111-139 (260)
20 2ddr_A Sphingomyelin phosphodi 98.5 2.3E-07 8E-12 90.2 10.1 69 233-313 128-200 (306)
21 2jc5_A Exodeoxyribonuclease; h 98.5 1.7E-08 5.7E-13 95.5 1.3 37 388-424 218-256 (259)
22 2voa_A AF_EXO, XTHA, exodeoxyr 98.5 5.2E-07 1.8E-11 85.3 11.4 36 65-106 2-37 (257)
23 2o3h_A DNA-(apurinic or apyrim 98.5 1.3E-07 4.4E-12 91.5 6.6 34 390-423 249-284 (285)
24 2j63_A AP-endonuclease; base e 98.5 1.3E-06 4.4E-11 92.8 14.2 41 63-106 148-189 (467)
25 1hd7_A DNA-(apurinic or apyrim 98.4 3.2E-07 1.1E-11 91.2 6.5 39 63-106 60-98 (318)
26 3g91_A MTH0212, exodeoxyribonu 98.4 2E-07 7E-12 89.4 4.6 36 65-105 4-39 (265)
27 1sr4_B CDT B, cytolethal diste 98.3 1.6E-05 5.5E-10 78.4 15.4 42 66-109 6-49 (261)
28 2ei9_A Non-LTR retrotransposon 98.0 1E-05 3.6E-10 77.9 8.5 35 65-105 8-42 (240)
29 4b8c_D Glucose-repressible alc 97.9 2.2E-06 7.4E-11 95.3 0.6 74 246-327 545-619 (727)
30 3ngq_A CCR4-NOT transcription 97.8 0.00011 3.8E-09 76.5 12.5 76 248-329 195-271 (398)
31 1wdu_A TRAS1 ORF2P; four-layer 97.5 0.00055 1.9E-08 64.6 10.5 57 234-311 101-157 (245)
32 2f1n_A CDT B, cytolethal diste 96.5 0.014 4.9E-07 57.3 10.8 45 64-110 15-61 (262)
33 1wdu_A TRAS1 ORF2P; four-layer 63.5 0.97 3.3E-05 42.0 -1.3 38 387-424 204-243 (245)
34 2ddr_A Sphingomyelin phosphodi 52.9 5.8 0.0002 37.5 2.2 15 410-424 291-305 (306)
35 3pt1_A UPF0364 protein YMR027W 34.7 8.1 0.00028 40.9 -0.0 17 297-313 374-390 (471)
36 2yka_B ORF57 protein, 52 kDa i 39.7 8.9 0.0003 24.0 0.0 9 386-394 8-16 (26)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=3.4e-90 Score=699.18 Aligned_cols=303 Identities=38% Similarity=0.698 Sum_probs=276.2
Q ss_pred cccccceEEEEEEeeCCCCCCCCCchhchhhhcCCCC-CCcEEEEEEEeeecCccccccCCCCchhhhHHHHHHHHHhcc
Q 011549 57 CISTNKLRIFVGTWNVAGRSPVGSLAVDLDEWLNLKD-AADMYVLGFQEIVPLKARTVIGAEDPTEATNWNLLIGKTLNN 135 (483)
Q Consensus 57 ~~~~~~l~I~v~TWNV~g~~P~~~l~~dL~~wL~~~~-~~DIyVIGlQEiv~l~~~~~~g~~d~~~~~~W~~~i~~~Ln~ 135 (483)
|+..++++|+||||||||..|++ +|.+||.+.. +||||||||||+ ++++.+++. .++.....|.+.|.++|+.
T Consensus 2 yt~~~~~~i~v~TwNvng~~~~~----~l~~wL~~~~~~pDI~viGlQE~-~l~~~~~~~-~~~~~~~~W~~~i~~~L~~ 75 (313)
T 3mtc_A 2 YTYIQNFRFFAGTYNVNGQSPKE----CLRLWLSNGIQAPDVYCVGFQEL-DLSKEAFFF-HDTPKEEEWFKAVSEGLHP 75 (313)
T ss_dssp CEEEEEEEEEEEEEECTTCCCCS----CTHHHHSSSCCCCSEEEEEEECS-CCSHHHHTT-CCCHHHHHHHHHHHHHSCT
T ss_pred CceeeccEEEEEEEEcCCccCch----hHHHHhcccCCCCCeEEEEEEec-ccchhhhcc-cCcchHHHHHHHHHHhcCC
Confidence 46789999999999999999865 4699998743 899999999999 777776654 3566789999999998853
Q ss_pred cCCCCCCCCCCCCCcCccccchhhhhhhhcccccCCCccchhhhccccccCCCCEEEEEEeeeeeEEEEEEEecCccccc
Q 011549 136 KYGCPWLSPKFSQNISSDSYLLDTEMESSLSSRAKTPKKEWWRTQSEKLYWGSKYKLMASKKMVGVLISVWIRRELLRKY 215 (483)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~V~s~qlvGi~l~Vfvr~~l~~~~ 215 (483)
+.+|++|++.+|+||+|+||||+++.+
T Consensus 76 ---------------------------------------------------~~~Y~~v~s~~lvGl~l~Vfvr~~~~~-- 102 (313)
T 3mtc_A 76 ---------------------------------------------------DAKYAKVKLIRLVGIMLLLYVKQEHAA-- 102 (313)
T ss_dssp ---------------------------------------------------TSCEEEEEEEEETTEEEEEEEEGGGGG--
T ss_pred ---------------------------------------------------CCCEEEEEEechhhhhhhhhhhhhhhh--
Confidence 357999999999999999999999999
Q ss_pred ccccceeeeeeeccccccCCceEEEEEEEEcCeEEEEEEeccCCCCCCchhhHhhHHHHHHHHhCCCCCCCCCCCCCCCC
Q 011549 216 CISNVKVCSVACGIMGYLGNKGSVSVSMSIEGTSFCFVAAHLASGEKKGDEGRRNHQVSEIFKRTSFPRSPNDDDNPHPL 295 (483)
Q Consensus 216 ~I~~V~~~~v~tG~~g~~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~ 295 (483)
+|++|++++|+||++|.+||||||+|||.+++++|||||||||||+++ .++||+||.+|++++.|++.... ..+.
T Consensus 103 ~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~--~~~Rn~d~~~I~~~l~f~~~~~~---~~~~ 177 (313)
T 3mtc_A 103 YISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE--YERRNQDYKDICSRMQFCQPDPS---LPPL 177 (313)
T ss_dssp GEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHCCBCCSCSS---SCCB
T ss_pred hcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCchH--HHHHHHHHHHHHHhcccCCCCCc---cCCc
Confidence 999999999999999999999999999999999999999999999876 46899999999999999765322 2345
Q ss_pred ccccccceEEecccccccc-cChHHHHHHHHhcChhhhhhcccchHHHHcCCCccCcccCCccCCCCcccCCCCCCCCCC
Q 011549 296 TILGHDQIFWFGDLNYRLY-LEDNLARHLIKKQDWRGLQEFDQLRREQEEGGVFQGWREGNIEFPPTYKYSSSNCNRYSG 374 (483)
Q Consensus 296 ~i~~~d~vfw~GDLNYRI~-~~~~~v~~li~~~~~~~Ll~~DQL~~e~~~g~~F~~f~E~~I~F~PTYKy~~gt~~~Yd~ 374 (483)
.|.+||+|||||||||||+ ++.++++++|++++|+.|+++|||+++|++|.+|.||.|++|+|||||||++|+ +.||
T Consensus 178 ~i~~~d~vfw~GDLNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s-~~yd- 255 (313)
T 3mtc_A 178 TISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGS-DDWD- 255 (313)
T ss_dssp CTTSSSEEEEEEECCCCBCSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSCTTCBCCCCCSCCCBCBCTTS-SSBC-
T ss_pred cccCCceEEEeccccccccCCCHHHHHHHHhcCCHHHHHHhHHHHHHHHcCCccCCcccCCcCcCCCccCcCCC-cccc-
Confidence 7889999999999999997 899999999999999999999999999999999999999999999999999999 9995
Q ss_pred CCCCCCCCCCCCcccccceeeeccCeeEEeeccC-CCCCCCcccccceEEEEEEEec
Q 011549 375 GGPNRSGEKPRTPAWCDRILWYGKGVKQLSYFRS-ESRFSDHRPVSALFSTQVEVTR 430 (483)
Q Consensus 375 ~~~~dts~k~R~PSWcDRIL~~~~~i~~l~Y~s~-~~~~SDHkPV~a~F~v~v~~~~ 430 (483)
||+|+|+|||||||||++.+++++.|.+. ++++||||||+|.|.++++++.
T Consensus 256 -----ts~k~R~PsWcDRIL~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~~~~~~~~ 307 (313)
T 3mtc_A 256 -----TSEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVRVVA 307 (313)
T ss_dssp -----CSTTCCCCBCCEEEEEEESSEEEEEEEECTTCCSSSSCCEEEEEEEEEEEEC
T ss_pred -----cccCEecccccceEEEecCCeEEEeeeeccCccCCCccCeEEEEEEEEEEee
Confidence 89999999999999999999999999997 5799999999999999999864
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=7.4e-87 Score=675.89 Aligned_cols=295 Identities=34% Similarity=0.574 Sum_probs=246.2
Q ss_pred cccceEEEEEEeeCCCCCCCCCchhchhhhcCCC------------CCCcEEEEEEEeeecCccccccCCCCchhhhHHH
Q 011549 59 STNKLRIFVGTWNVAGRSPVGSLAVDLDEWLNLK------------DAADMYVLGFQEIVPLKARTVIGAEDPTEATNWN 126 (483)
Q Consensus 59 ~~~~l~I~v~TWNV~g~~P~~~l~~dL~~wL~~~------------~~~DIyVIGlQEiv~l~~~~~~g~~d~~~~~~W~ 126 (483)
.+..|+||||||||||+.|+++ |.+||.+. .+||||||||||+.. ....|.
T Consensus 4 ~~~~i~i~vgTwNv~g~~p~~~----L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~-------------~~~~W~ 66 (316)
T 4a9c_A 4 EPDMISVFIGTWNMGSVPPPKN----VTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSV-------------GDREWL 66 (316)
T ss_dssp --CEEEEEEEEEECTTSCCCSC----CHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCS-------------CHHHHH
T ss_pred CCCeEEEEEEEeEcCCcCCCcc----hhHhhcccccccCcccccccCCCcEEEEecccccc-------------chhHHH
Confidence 5678999999999999999875 59999763 268999999999732 258999
Q ss_pred HHHHHHhcccCCCCCCCCCCCCCcCccccchhhhhhhhcccccCCCccchhhhccccccCCCCEEEEEEeeeeeEEEEEE
Q 011549 127 LLIGKTLNNKYGCPWLSPKFSQNISSDSYLLDTEMESSLSSRAKTPKKEWWRTQSEKLYWGSKYKLMASKKMVGVLISVW 206 (483)
Q Consensus 127 ~~i~~~Ln~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~V~s~qlvGi~l~Vf 206 (483)
..|.++|+.. ...+|.+|++++|+||+|+||
T Consensus 67 ~~i~~~L~~~-------------------------------------------------~~~~Y~~v~s~~L~gi~l~Vf 97 (316)
T 4a9c_A 67 DLLRGGLKEL-------------------------------------------------TDLDYRPIAMQSLWNIKVAVL 97 (316)
T ss_dssp HHHHHHHHHH-------------------------------------------------HSCCCEEEEEEEETTEEEEEE
T ss_pred HHHHHHhccc-------------------------------------------------cCCCEEEEEeeeehheeeeeE
Confidence 9999999741 135799999999999999999
Q ss_pred EecCcccccccccceeeeeeeccccccCCceEEEEEEEEcCeEEEEEEeccCCCCCCchhhHhhHHHHHHHHhCCCCCCC
Q 011549 207 IRRELLRKYCISNVKVCSVACGIMGYLGNKGSVSVSMSIEGTSFCFVAAHLASGEKKGDEGRRNHQVSEIFKRTSFPRSP 286 (483)
Q Consensus 207 vr~~l~~~~~I~~V~~~~v~tG~~g~~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~ 286 (483)
+|.++.+ +|++|++++|+||++|++||||||+|||.+++++|||||||||||+++ .++||+||.+|++++.|+...
T Consensus 98 vk~~~~~--~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~~--~~~Rn~d~~~I~~~l~f~~~~ 173 (316)
T 4a9c_A 98 VKPEHEN--RISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEK--TARRNQNYLDILRLLSLGDRQ 173 (316)
T ss_dssp ECGGGGG--GEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHHHHHHHHHHHCCC----
T ss_pred EeHHHhh--hCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEEEeccccCchH--HHHHHHHHHHHHHhCCCCCCC
Confidence 9999999 999999999999999999999999999999999999999999999976 468999999999999997543
Q ss_pred CCCCCCCCCccccccceEEecccccccccChHHHHHHHHhcChhhhhhcccchHHHHcCCCccCcccCCccCCCCcccCC
Q 011549 287 NDDDNPHPLTILGHDQIFWFGDLNYRLYLEDNLARHLIKKQDWRGLQEFDQLRREQEEGGVFQGWREGNIEFPPTYKYSS 366 (483)
Q Consensus 287 ~~~~~~~~~~i~~~d~vfw~GDLNYRI~~~~~~v~~li~~~~~~~Ll~~DQL~~e~~~g~~F~~f~E~~I~F~PTYKy~~ 366 (483)
... ......+|||||||||||||+++.++++++|++++|+.||++|||+.+|++|.+|.||+|++|+|+|||||++
T Consensus 174 ~~~----~d~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E~~i~F~PTYKy~~ 249 (316)
T 4a9c_A 174 LNA----FDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYER 249 (316)
T ss_dssp -------CCTTTTSSEEEEEEECCCCBSSCHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCT
T ss_pred cCc----cccCCcCCeEEEcCCccCCcCCCHHHHHHHHhcccHHHHhccChHHHHHhcCCcccccccCCcccCCCccccC
Confidence 211 1123468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccceeeecc---CeeEEeeccC-CCCCCCcccccceEEEEEE
Q 011549 367 SNCNRYSGGGPNRSGEKPRTPAWCDRILWYGK---GVKQLSYFRS-ESRFSDHRPVSALFSTQVE 427 (483)
Q Consensus 367 gt~~~Yd~~~~~dts~k~R~PSWcDRIL~~~~---~i~~l~Y~s~-~~~~SDHkPV~a~F~v~v~ 427 (483)
|+.+.|++....++|+|+|+|||||||||++. .++++.|.+. ++++||||||+|.|.+.|+
T Consensus 250 ~s~~~y~~~~~~~~~~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~V~ 314 (316)
T 4a9c_A 250 GSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGVT 314 (316)
T ss_dssp TCSSCBCCC--------CCCCBCCEEEEEEECTTCCEEEEEEEECSSCCSSSSCCEEEEEEEECC
T ss_pred CCcccccccccccccccccCCcccceEEeccCCCCceEEeeecccCCcCCCCcccEEEEEEEEEE
Confidence 99446876554468889999999999999975 4889999987 6799999999999998873
No 3
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=7.1e-82 Score=648.45 Aligned_cols=322 Identities=33% Similarity=0.595 Sum_probs=281.8
Q ss_pred HHhhhcccCccccccceEEEEEEeeCCCCCCCCCchhchhhhcCCC--CCCcEEEEEEEeeecCccccccCCCCchhhhH
Q 011549 47 EEVVSAEMDPCISTNKLRIFVGTWNVAGRSPVGSLAVDLDEWLNLK--DAADMYVLGFQEIVPLKARTVIGAEDPTEATN 124 (483)
Q Consensus 47 ~~~~~~~~~~~~~~~~l~I~v~TWNV~g~~P~~~l~~dL~~wL~~~--~~~DIyVIGlQEiv~l~~~~~~g~~d~~~~~~ 124 (483)
++|..++.. ++..++++|+||||||||+.|+. +|.+||.+. .+||||||||||+++|+++++++ .++.....
T Consensus 10 ~~l~~r~~e-~~~~~~~~i~v~TwNv~g~~~~~----~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~-~~~~~~~~ 83 (347)
T 1i9z_A 10 HELRKRENE-FSEHKNVKIFVASYNLNGCSATT----KLENWLFPENTPLADIYVVGFQEIVQLTPQQVIS-ADPAKRRE 83 (347)
T ss_dssp HHHHHTGGG-TEEEEEEEEEEEEEECTTCCCCS----CCHHHHSCSSSCCCSEEEEEEECSSCCC-----C-CCHHHHHH
T ss_pred HHHHHHHHh-cCCCCCcEEEEEeEecCCCCCch----hHHHHhccccCCCCCEEEEEeEEeecCchhhhcc-cCchhHHH
Confidence 445555544 45889999999999999999844 579999864 48999999999999999998876 47788899
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCCCcCccccchhhhhhhhcccccCCCccchhhhccccccCCCCEEEEEEeeeeeEEEE
Q 011549 125 WNLLIGKTLNNKYGCPWLSPKFSQNISSDSYLLDTEMESSLSSRAKTPKKEWWRTQSEKLYWGSKYKLMASKKMVGVLIS 204 (483)
Q Consensus 125 W~~~i~~~Ln~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~V~s~qlvGi~l~ 204 (483)
|.+.|.++|+... ..+..|.+|++.+|+|++|+
T Consensus 84 w~~~i~~~L~~~~-----------------------------------------------~~~~~Y~~v~s~~l~g~~L~ 116 (347)
T 1i9z_A 84 WESCVKRLLNGKC-----------------------------------------------TSGPGYVQLRSGQLVGTALM 116 (347)
T ss_dssp HHHHHHHHHHHTC-----------------------------------------------CSSCCEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHhhcc-----------------------------------------------cCCCceeEEEEeeccceEEE
Confidence 9999999997521 02568999999999999999
Q ss_pred EEEecCcccccccccceeeeeeeccccccCCceEEEEEEEEcCeEEEEEEeccCCCCCCchhhHhhHHHHHHHHhCCCCC
Q 011549 205 VWIRRELLRKYCISNVKVCSVACGIMGYLGNKGSVSVSMSIEGTSFCFVAAHLASGEKKGDEGRRNHQVSEIFKRTSFPR 284 (483)
Q Consensus 205 Vfvr~~l~~~~~I~~V~~~~v~tG~~g~~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~ 284 (483)
||+|.++.+ +|++|+++.|+||++|.+||||||+++|.+++++||||||||+||+++. .+||+||.+|++.+.|+.
T Consensus 117 Vfvr~~~~~--~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~~~l~fvn~HLaa~~~~~--~~R~~d~~~I~~~l~f~~ 192 (347)
T 1i9z_A 117 IFCKESCLP--SIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTNY--DERDHDYRTIASGLRFRR 192 (347)
T ss_dssp EEEEGGGGG--GEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCSSCH--HHHHHHHHHHHHHCCCGG
T ss_pred EEEehHhhh--hccceeeeeEeccCCCccCCCceEEEEEEECCeEEEEEEecCCCCCccH--HHHHHHHHHHHHhhccCc
Confidence 999999999 9999999999999999999999999999999999999999999998764 469999999999998865
Q ss_pred CCCCCCCCCCCccccccceEEecccccccccChHHHHHHHHhcChhhhhhcccchHHHHcCCCccCcccCCccCCCCccc
Q 011549 285 SPNDDDNPHPLTILGHDQIFWFGDLNYRLYLEDNLARHLIKKQDWRGLQEFDQLRREQEEGGVFQGWREGNIEFPPTYKY 364 (483)
Q Consensus 285 ~~~~~~~~~~~~i~~~d~vfw~GDLNYRI~~~~~~v~~li~~~~~~~Ll~~DQL~~e~~~g~~F~~f~E~~I~F~PTYKy 364 (483)
. ..|.+||++||||||||||+++.++++++|.+++|..|+++|||+.++++|.+|.+|.|++|+|+|||||
T Consensus 193 ~---------~~i~~~d~v~~~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~ 263 (347)
T 1i9z_A 193 G---------RSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKF 263 (347)
T ss_dssp G---------CCTTSSSEEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCB
T ss_pred c---------cccccCccEEEecccccccCCCHHHHHHHHhhccHHHhhcccHHHHHHhcCCcccccccCCCCCCCCccc
Confidence 3 2367889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccceeeeccCeeEEeeccCCCCCCCcccccceEEEEEEEecCCcccccccccc
Q 011549 365 SSSNCNRYSGGGPNRSGEKPRTPAWCDRILWYGKGVKQLSYFRSESRFSDHRPVSALFSTQVEVTRSNPKAVAMQSIL 442 (483)
Q Consensus 365 ~~gt~~~Yd~~~~~dts~k~R~PSWcDRIL~~~~~i~~l~Y~s~~~~~SDHkPV~a~F~v~v~~~~~~~~~~~l~~~~ 442 (483)
+.++ +.|| ||+|+|+|||||||||++ .++++.|.+.++++||||||+|.|.+.|++.+..+|....++++
T Consensus 264 ~~~~-~~yd------~s~k~R~PsWcDRIL~~~-~l~~~~Y~~~~~~~SDH~PV~a~f~~~v~~~~~~~~~~~~~~~~ 333 (347)
T 1i9z_A 264 DIGT-DIYD------TSDKHRVPAWTDRILYRG-ELVPHSYQSVPLYYSDHRPIYATYEANIVKVDREKKKILFEELY 333 (347)
T ss_dssp CTTS-SCBC------CSTTCCCCBCCEEEEEES-SCEEEEEEECCCCSSSBCCEEEEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCC-cccc------ccccccCCcccceEEEeC-CEEEEEEEecCccCCCcCCceeEEEEEEecCCHHHHHHHHHHHH
Confidence 9999 9995 899999999999999988 89999999998999999999999999999999887776666555
No 4
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.9e-79 Score=632.42 Aligned_cols=303 Identities=32% Similarity=0.571 Sum_probs=261.3
Q ss_pred hhhHHHhhhcccCccccccceEEEEEEeeCCCCC-CCCCchhchhhhcCCC---CCCcEEEEEEEeeecCccccccCCCC
Q 011549 43 MDDVEEVVSAEMDPCISTNKLRIFVGTWNVAGRS-PVGSLAVDLDEWLNLK---DAADMYVLGFQEIVPLKARTVIGAED 118 (483)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~l~I~v~TWNV~g~~-P~~~l~~dL~~wL~~~---~~~DIyVIGlQEiv~l~~~~~~g~~d 118 (483)
|++..+|. .++..++++|+||||||||.. +++ +|.+||.+. .+||||||||||+++
T Consensus 11 ~l~~~el~-----~~~~~~~l~i~v~TwNv~g~~~~~~----~L~~~l~~~~~~~~pDI~viGlQEi~~----------- 70 (357)
T 2xsw_A 11 LLGADELA-----RYFPDRNVALFVATWNMQGQKELPP----SLDEFLLPAEADYAQDLYVIGVQEGCS----------- 70 (357)
T ss_dssp TTSHHHHH-----HHCTTCEEEEEEEEEECTTCSSCCS----CCHHHHSCTTCCSCCSEEEEEEESCCS-----------
T ss_pred ccChhhhh-----hcCCCCCceEEEEEEecCCCCCCcc----cHHHHhccccccCCCCEEEEEeeeccc-----------
Confidence 55555554 446779999999999999864 444 468999653 379999999999963
Q ss_pred chhhhHHHHHHHHHhcccCCCCCCCCCCCCCcCccccchhhhhhhhcccccCCCccchhhhccccccCCCCEEEEEEeee
Q 011549 119 PTEATNWNLLIGKTLNNKYGCPWLSPKFSQNISSDSYLLDTEMESSLSSRAKTPKKEWWRTQSEKLYWGSKYKLMASKKM 198 (483)
Q Consensus 119 ~~~~~~W~~~i~~~Ln~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~V~s~ql 198 (483)
....|.+.|.++|+ ..|+++.+.+|
T Consensus 71 --~~~~W~~~l~~~L~-----------------------------------------------------~~Y~~v~s~~l 95 (357)
T 2xsw_A 71 --DRREWETRLQETLG-----------------------------------------------------PHYVLLSSAAH 95 (357)
T ss_dssp --CHHHHHHHHHHHHC-----------------------------------------------------TTEEEEEEEEE
T ss_pred --hHHHHHHHHHHHhC-----------------------------------------------------Ccccchhhhhh
Confidence 14689999887773 36999999999
Q ss_pred eeEEEEEEEecCcccccccccceeeeeeeccccccCCceEEEEEEEEcCeEEEEEEeccCCCCCCchhhHhhHHHHHHHH
Q 011549 199 VGVLISVWIRRELLRKYCISNVKVCSVACGIMGYLGNKGSVSVSMSIEGTSFCFVAAHLASGEKKGDEGRRNHQVSEIFK 278 (483)
Q Consensus 199 vGi~l~Vfvr~~l~~~~~I~~V~~~~v~tG~~g~~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~ 278 (483)
+|++|+||+|.++.+ +|++|+++.|+||++|.+||||||+|||.+++++||||||||+||+++. .+||+||.+|++
T Consensus 96 ~g~~l~Vfvr~~~~~--~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~~~~~--~~Rn~d~~~I~~ 171 (357)
T 2xsw_A 96 GVLYMSLFIRRDLIW--FCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGKV--AERLLDYTRTVQ 171 (357)
T ss_dssp TTEEEEEEEEGGGGG--GBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCSTTCH--HHHHHHHHHHHH
T ss_pred hhEEEEEEEchHHhh--cCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCCCchH--HHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999998763 679999999999
Q ss_pred hCCCCCCCCCCC---CCCCCccccccceEEecccccccccChHHHHHHHH---hcChhhhhhcccchHHHHcCCCccCcc
Q 011549 279 RTSFPRSPNDDD---NPHPLTILGHDQIFWFGDLNYRLYLEDNLARHLIK---KQDWRGLQEFDQLRREQEEGGVFQGWR 352 (483)
Q Consensus 279 ~~~F~~~~~~~~---~~~~~~i~~~d~vfw~GDLNYRI~~~~~~v~~li~---~~~~~~Ll~~DQL~~e~~~g~~F~~f~ 352 (483)
.+.|++...... ......+.++|+|||+|||||||++++++++++|+ +++|+.|+++|||+.++++|.+|.||.
T Consensus 172 ~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~g~~F~gf~ 251 (357)
T 2xsw_A 172 ALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQ 251 (357)
T ss_dssp HCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSSCHHHHHHHHC---CCCHHHHHTTBHHHHHHHHTSSSTTCB
T ss_pred HhcccccccccccccccccccccccceEEEecccCcccccchHHHHHHHhhcchhhHHHHHhcChhHHHHhccccccCcc
Confidence 999976432110 00112345789999999999999999999999986 579999999999999999999999999
Q ss_pred cCCccCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccceeeecc---CeeEEeeccC-CCCCCCcccccceEEEEEEE
Q 011549 353 EGNIEFPPTYKYSSSNCNRYSGGGPNRSGEKPRTPAWCDRILWYGK---GVKQLSYFRS-ESRFSDHRPVSALFSTQVEV 428 (483)
Q Consensus 353 E~~I~F~PTYKy~~gt~~~Yd~~~~~dts~k~R~PSWcDRIL~~~~---~i~~l~Y~s~-~~~~SDHkPV~a~F~v~v~~ 428 (483)
|++|+|+|||||++|+ +.|| +|+|+|+|||||||||++. .++++.|.++ ++++||||||+|.|.+.++.
T Consensus 252 E~~I~F~PTYKy~~~t-~~Yd------ts~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~v~~ 324 (357)
T 2xsw_A 252 EPDIHFLPSYKFDIGK-DTYD------STSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLFRVKVRP 324 (357)
T ss_dssp CCCCCSCCCBCBCTTS-SSBC------CSTTCCCCBCCEEEEEEESSTTSEEEEEEEECTTCCSSSSCCEEEEEEEECCC
T ss_pred ccCCCCCCCccccCCC-cccc------ccCCCCCCcccceEEEecCCCCceEEEEeEecccccCCCcCCceeEEEEEEec
Confidence 9999999999999999 9995 8899999999999999964 6899999997 57999999999999998865
Q ss_pred ecC
Q 011549 429 TRS 431 (483)
Q Consensus 429 ~~~ 431 (483)
..+
T Consensus 325 ~~~ 327 (357)
T 2xsw_A 325 GRD 327 (357)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=1.5e-64 Score=504.62 Aligned_cols=272 Identities=23% Similarity=0.428 Sum_probs=233.4
Q ss_pred cccceEEEEEEeeCCCCCCCCCchhchhhhcCC--CCCCcEEEEEEEeeecCccccccCCCCchhhhHHHHHHHHHhccc
Q 011549 59 STNKLRIFVGTWNVAGRSPVGSLAVDLDEWLNL--KDAADMYVLGFQEIVPLKARTVIGAEDPTEATNWNLLIGKTLNNK 136 (483)
Q Consensus 59 ~~~~l~I~v~TWNV~g~~P~~~l~~dL~~wL~~--~~~~DIyVIGlQEiv~l~~~~~~g~~d~~~~~~W~~~i~~~Ln~~ 136 (483)
..++++|+|+||||++..|+++ |.+|+.. ...||||||||||++. ++.. ......|.+.|.+.|+.
T Consensus 3 ~~~~~~i~V~T~Nv~~~~~~~~----l~~wl~~~~~~~pDI~viglQEv~~-~~~~------~~~~~~w~~~l~~~L~~- 70 (282)
T 2imq_X 3 PPAQLSVHTVSWNSGHERAPTN----LEELLGLNSGETPDVIAVAVQGFGF-QTDK------PQQGPACVKNFQSLLTS- 70 (282)
T ss_dssp CCSEEEEEEEEEEEETCCCCSC----CHHHHTCTTSCCCSEEEEEEEESCT-TTCT------TCCHHHHHHHHHHHHHH-
T ss_pred CCCCcEEEEEEEeCCCCcCchh----HHHHhcccccCCCCEEEEEeeeecc-cccc------chhhHHHHHHHHHhcCC-
Confidence 3468999999999998877654 6899974 2489999999999964 3222 12467899998888742
Q ss_pred CCCCCCCCCCCCCcCccccchhhhhhhhcccccCCCccchhhhccccccCCCCEEEEEE--eeeeeEEEEEEEecCcccc
Q 011549 137 YGCPWLSPKFSQNISSDSYLLDTEMESSLSSRAKTPKKEWWRTQSEKLYWGSKYKLMAS--KKMVGVLISVWIRRELLRK 214 (483)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~V~s--~qlvGi~l~Vfvr~~l~~~ 214 (483)
..|..|++ .+|+|++++||+|.++.+
T Consensus 71 ---------------------------------------------------~~Y~~v~~~~~~~~G~~l~vf~k~~~~~- 98 (282)
T 2imq_X 71 ---------------------------------------------------KGYTKLKNTITETMGLTVYCLEKHLDQN- 98 (282)
T ss_dssp ---------------------------------------------------TTEEEEEEEECSSEEEEEEEEGGGCCTT-
T ss_pred ---------------------------------------------------CceEEEEeccCceeEEEEEEEEccccCc-
Confidence 35999998 899999999999999887
Q ss_pred cccccceeeeeeeccccccCCceEEEEEEEEcCeEEEEEEeccCCCCCCchhhHhhHHHHHHHHhCCCCCCCCCCCCCCC
Q 011549 215 YCISNVKVCSVACGIMGYLGNKGSVSVSMSIEGTSFCFVAAHLASGEKKGDEGRRNHQVSEIFKRTSFPRSPNDDDNPHP 294 (483)
Q Consensus 215 ~~I~~V~~~~v~tG~~g~~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~ 294 (483)
.|+++++ +|++|.+||||||+++|.+++++||||||||+|++++. ++|+.++..|++.+.+
T Consensus 99 -~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~~--~~R~~~~~~I~~~~~~------------ 159 (282)
T 2imq_X 99 -TLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTS--TNTKYAYDTRLDYSKK------------ 159 (282)
T ss_dssp -TCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCT--TSSSSSCCGGGCTTSS------------
T ss_pred -cceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCchH--HHHHHHHHHHHHhhhc------------
Confidence 7777654 56678899999999999999999999999999997643 4689898888765422
Q ss_pred CccccccceEEecccccccccChHHHHHHHHhcChhhhhhcccchHHHHcCCCccCcccCCccCCCCcccCCCCCCCCCC
Q 011549 295 LTILGHDQIFWFGDLNYRLYLEDNLARHLIKKQDWRGLQEFDQLRREQEEGGVFQGWREGNIEFPPTYKYSSSNCNRYSG 374 (483)
Q Consensus 295 ~~i~~~d~vfw~GDLNYRI~~~~~~v~~li~~~~~~~Ll~~DQL~~e~~~g~~F~~f~E~~I~F~PTYKy~~gt~~~Yd~ 374 (483)
+.++++|||+||||||++.+.++++++|.+++|..|+++|||+.+++ |.+|.+|.|++|+|+|||||+.++ +.|+
T Consensus 160 --~~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~~~~~l~~~DqL~~~~~-~~~f~~f~e~~i~f~PTYk~~~~~-~~y~- 234 (282)
T 2imq_X 160 --DDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKE-QKLFDGWTEPQVTFKPTYKFKPNT-DEYD- 234 (282)
T ss_dssp --SSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHHHH-TTSSTTCBCCCCCSCCCBCBCTTS-SCBC-
T ss_pred --cCccceEEEecccccccCCCHHHHHHHHhhccHHHHhhhhHHHHhhc-cccccccccCCcCCCCCccccCCC-cccc-
Confidence 23578999999999999999999999999999999999999999999 999999999999999999999999 9996
Q ss_pred CCCCCCCCCCCCcccccceeeec---cCeeEEeeccC-CCCCCCcccccceEEEEE
Q 011549 375 GGPNRSGEKPRTPAWCDRILWYG---KGVKQLSYFRS-ESRFSDHRPVSALFSTQV 426 (483)
Q Consensus 375 ~~~~dts~k~R~PSWcDRIL~~~---~~i~~l~Y~s~-~~~~SDHkPV~a~F~v~v 426 (483)
++|+|||||||||++ ..++++.|.+. +...|||+||+|.|.+.+
T Consensus 235 --------~~R~Psw~DrIl~~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~~~~ 282 (282)
T 2imq_X 235 --------LSATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 282 (282)
T ss_dssp --------TTSCCBCCEEEEEECSSSCCEEEEEEEECTTCCSSSSCCEEEEEEEEC
T ss_pred --------ccCCccccceEEEecCCCCceEeeEecCCCCCCCCCcCCeEEEEEEEC
Confidence 469999999999996 46899999998 579999999999998763
No 6
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.54 E-value=1.2e-13 Score=129.53 Aligned_cols=66 Identities=21% Similarity=0.403 Sum_probs=46.6
Q ss_pred cccCCceEEEEEEEEcCeEEEEEEeccCCCCCCchhhHhhHHHHHHHHhCCCCCCCCCCCCCCCCccccccceEEecccc
Q 011549 231 GYLGNKGSVSVSMSIEGTSFCFVAAHLASGEKKGDEGRRNHQVSEIFKRTSFPRSPNDDDNPHPLTILGHDQIFWFGDLN 310 (483)
Q Consensus 231 g~~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLN 310 (483)
+....++.+.+.+...+..+.++|+||.++.... +.|..+...+++.+.- ......+|++||||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~--~~~~~q~~~~~~~l~~--------------~~~~~pvIl~GDfN 160 (256)
T 4gz1_A 97 NTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHS--AERIRQLKTVLGKMQE--------------APDSTTVIFAGDTN 160 (256)
T ss_dssp TCSSCCEEEEEEEEETTEEEEEEECBCCCSGGGH--HHHHHHHHHHHHHHHH--------------SCTTSEEEEEEECC
T ss_pred cccccceEEEEEEEeCCEEEEEEeecccccccch--hhhhHHHHHHhhhhhh--------------ccCcceEEEeCccC
Confidence 3445678899999999999999999999886432 3456666666654310 01224689999999
Q ss_pred cc
Q 011549 311 YR 312 (483)
Q Consensus 311 YR 312 (483)
.+
T Consensus 161 ~~ 162 (256)
T 4gz1_A 161 LR 162 (256)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 7
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.47 E-value=1e-12 Score=125.10 Aligned_cols=62 Identities=19% Similarity=0.354 Sum_probs=46.8
Q ss_pred cCCceEEEEEEEEcCeEEEEEEeccCCCCCCchhhHhhHHHHHHHHhCCCCCCCCCCCCCCCCccccccceEEecccccc
Q 011549 233 LGNKGSVSVSMSIEGTSFCFVAAHLASGEKKGDEGRRNHQVSEIFKRTSFPRSPNDDDNPHPLTILGHDQIFWFGDLNYR 312 (483)
Q Consensus 233 ~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNYR 312 (483)
+..+|++.+++.+.+..++++|+||.+..... ..|..+...|++.+. ....+|++||||-.
T Consensus 120 ~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~--~~r~~q~~~l~~~~~-----------------~~~~~il~GDfN~~ 180 (266)
T 3teb_A 120 ISARRIVSITINYEGQDIEFYSCHMNLPNCET--EDMGKNIQTILNRTQ-----------------NSNLKILMGDFNTD 180 (266)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCTT--CCHHHHHHHHHTSSC-----------------SCCEEEEEEECCCC
T ss_pred cccceEEEEEEEeCCeEEEEEEecCCCccCCh--HHHHHHHHHHHHHHh-----------------cCCcEEEEeECCCC
Confidence 45689999999999999999999999985432 246677777765431 13579999999954
Q ss_pred c
Q 011549 313 L 313 (483)
Q Consensus 313 I 313 (483)
-
T Consensus 181 ~ 181 (266)
T 3teb_A 181 A 181 (266)
T ss_dssp T
T ss_pred C
Confidence 3
No 8
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.45 E-value=2.6e-13 Score=127.50 Aligned_cols=67 Identities=21% Similarity=0.182 Sum_probs=43.4
Q ss_pred cCCceEEEEEEEEcCeEEEEEEeccCCCCCCchhhHhhHHHHHHHHhCCCCCCCCCCCCCCCCccccccceEEecccccc
Q 011549 233 LGNKGSVSVSMSIEGTSFCFVAAHLASGEKKGDEGRRNHQVSEIFKRTSFPRSPNDDDNPHPLTILGHDQIFWFGDLNYR 312 (483)
Q Consensus 233 ~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNYR 312 (483)
.+..+.+.+.+.+.+..+.++|+||.+..... ..|..+...++..+... ........+|++||||.+
T Consensus 103 ~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~--~~~~~q~~~~~~~~~~~-----------~~~~~~~~vIl~GDfN~~ 169 (256)
T 4fva_A 103 GMYRTLQILEGSIGGLKVFLLNTHLESTREHR--PQRCAQFGFCMDKVREI-----------IAQNPGALVFFGGDLNLR 169 (256)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEECCCSGGGH--HHHHHHHHHHHHHHHHH-----------HHHSTTCEEEEEEECCCC
T ss_pred cccceeEEEEEEeCCeEEEEEEecCCCCCcch--HHHHHHHHHHHHHhhhh-----------hhccCCCcEEEeccCCCC
Confidence 35678889999999999999999999875432 33444444443321100 000123579999999954
No 9
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.42 E-value=2.5e-12 Score=118.45 Aligned_cols=62 Identities=15% Similarity=0.288 Sum_probs=44.0
Q ss_pred CCceEEEEEEEEcCeEEEEEEeccCCCCCCchhhHhhHHHHHHHHhCCCCCCCCCCCCCCCCccccccceEEeccccc
Q 011549 234 GNKGSVSVSMSIEGTSFCFVAAHLASGEKKGDEGRRNHQVSEIFKRTSFPRSPNDDDNPHPLTILGHDQIFWFGDLNY 311 (483)
Q Consensus 234 GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNY 311 (483)
...+.+.+.+.+.+..+.++++||.+.... .+.|..+...|++.+.- ......+|++||||-
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~--~~~r~~q~~~~~~~l~~--------------~~~~~pvIl~GDfN~ 155 (250)
T 4f1h_A 94 MMRNLLIAQVTFSGQKLYLMTSHLESCKNQ--SQERTKQLRVVLQKIKE--------------APEDAIVIFAGDTNL 155 (250)
T ss_dssp SCCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHH--------------SCTTEEEEEEEECCC
T ss_pred ccceEEEEEEecCCcEEEEecccccccccc--HHHHHHHHHHHHHHHHh--------------cCCCCCEEEEEecCC
Confidence 346678888999999999999999987643 23466677776654310 012246899999994
No 10
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.36 E-value=1.6e-12 Score=133.36 Aligned_cols=66 Identities=21% Similarity=0.187 Sum_probs=44.0
Q ss_pred CCceEEEEEEEEcCeEEEEEEeccCCCCCCchhhHhhHHHHHHHHhCCCCCCCCCCCCCCCCccccccceEEecccccc
Q 011549 234 GNKGSVSVSMSIEGTSFCFVAAHLASGEKKGDEGRRNHQVSEIFKRTSFPRSPNDDDNPHPLTILGHDQIFWFGDLNYR 312 (483)
Q Consensus 234 GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNYR 312 (483)
...+++.+.+.+.+..|+++|.||.+.... ...|..+...++..+.... .......||++||||-+
T Consensus 210 ~~r~~l~~~i~~~g~~l~v~ntHL~s~~~~--~~~R~~Q~~~l~~~~~~~~-----------~~~~~~pvIl~GDFN~~ 275 (362)
T 4gew_A 210 MYRTLQILEGSIGGLKVFLLNTHLESTREH--RPQRCAQFGFCMDKVREII-----------AQNPGALVFFGGDLNLR 275 (362)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHHHHHH-----------HHCTTCEEEEEEECCCC
T ss_pred ccceEEEEEEEECCEEEEEEEecCCccccc--hhHHHHHHHHHHHHhHhhh-----------hcCCCCCeEEeecCCCC
Confidence 346788899999999999999999987543 2356666665544321000 00123479999999944
No 11
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.27 E-value=6.8e-11 Score=113.58 Aligned_cols=139 Identities=17% Similarity=0.132 Sum_probs=76.2
Q ss_pred CCceEEEEEEEE--cCeEEEEEEeccCCCCCCchhhHhhHHHHHHHHhCCCCCCCCCCCCCCCCccccccceEEeccccc
Q 011549 234 GNKGSVSVSMSI--EGTSFCFVAAHLASGEKKGDEGRRNHQVSEIFKRTSFPRSPNDDDNPHPLTILGHDQIFWFGDLNY 311 (483)
Q Consensus 234 GNKGaV~ir~~i--~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNY 311 (483)
.+++++.+.+.. .+..|+++|+||.+.. ...|..+...|.+.+.- +.....+|++||||
T Consensus 114 ~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~l~~--------------~~~~~pvIl~GDfN- 174 (267)
T 3g6s_A 114 CVRIATWAKFKDKATGKIFMAVNTHFDHVG----EEARRQSALLIIRKIKE--------------IVGERPAVVTGDFN- 174 (267)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHH--------------HTTTSCEEEEEECS-
T ss_pred CcceEEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHH--------------hcCCCCEEEEeECC-
Confidence 467899999885 6789999999998764 23466665555544210 11124689999999
Q ss_pred ccccChHHHHHHHHhcChhhhhhcccchHHHHcCCCccCcccCCccC--CCCcccCCCCCCCCCCCCCCCCCCCCCCccc
Q 011549 312 RLYLEDNLARHLIKKQDWRGLQEFDQLRREQEEGGVFQGWREGNIEF--PPTYKYSSSNCNRYSGGGPNRSGEKPRTPAW 389 (483)
Q Consensus 312 RI~~~~~~v~~li~~~~~~~Ll~~DQL~~e~~~g~~F~~f~E~~I~F--~PTYKy~~gt~~~Yd~~~~~dts~k~R~PSW 389 (483)
..+.+.+.+.+..... ..-..|.+..-.+ .+||...... . .....|
T Consensus 175 --~~~~~~~~~~l~~~~~----------------~l~d~~~~~~~~~~~~~T~~~~~~~-~---------~~~~~r---- 222 (267)
T 3g6s_A 175 --VTDASDAYETITTNEF----------------VMKDAYKTAARVTGVDYTFHDFARI-P---------AEDCEK---- 222 (267)
T ss_dssp --SCTTSHHHHHHHSSSS----------------CCEEHHHHCSEEEECSCSBCTTTTS-C---------GGGCCC----
T ss_pred --CCCCCHHHHHhhcCCc----------------chhhhHhhhccccCCCCCEeCCCCC-C---------CCCCCc----
Confidence 3333333332222110 0111233322222 3344221111 0 001134
Q ss_pred ccceeeeccCeeEEeeccCCC----CCCCcccccceEEE
Q 011549 390 CDRILWYGKGVKQLSYFRSES----RFSDHRPVSALFST 424 (483)
Q Consensus 390 cDRIL~~~~~i~~l~Y~s~~~----~~SDHkPV~a~F~v 424 (483)
.|+||+.+. ++...+..... ..|||.||.|....
T Consensus 223 iD~I~~s~~-~~~~~~~v~~~~~~~~~SDH~PV~a~~~~ 260 (267)
T 3g6s_A 223 IDFIFVTPQ-VLVKSCEIPAEVPEALLSDHNPQLADLEL 260 (267)
T ss_dssp CEEEEECTT-SEEEEEEECCCCSSSCCCSBCCEEEEEEE
T ss_pred EeEEEeCCC-ceEEEEEEecCCCCCCCCCcccEEEEEEe
Confidence 899999653 55555654432 46999999997654
No 12
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.21 E-value=1.6e-11 Score=116.90 Aligned_cols=66 Identities=8% Similarity=0.146 Sum_probs=43.4
Q ss_pred CCceEEEEEEEEcCeEEEEEEeccCCCCCCc---hhhHhhHHHHHHHHhCCCCCCCCCCCCCCCCccccccceEEecccc
Q 011549 234 GNKGSVSVSMSIEGTSFCFVAAHLASGEKKG---DEGRRNHQVSEIFKRTSFPRSPNDDDNPHPLTILGHDQIFWFGDLN 310 (483)
Q Consensus 234 GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~---~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLN 310 (483)
..++++.+++.+.+..|+++|+||+++.... ....|...+..|...+.- .......+|++||||
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~-------------~~~~~~~~Il~GDFN 153 (268)
T 1ako_A 87 AQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLET-------------ELKRDNPVLIMGDMN 153 (268)
T ss_dssp HHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHH-------------HCCTTSCEEEEEECC
T ss_pred cCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHH-------------hhhCCCCEEEEeECC
Confidence 4578899999999899999999999886421 112355555555433210 001235799999999
Q ss_pred cc
Q 011549 311 YR 312 (483)
Q Consensus 311 YR 312 (483)
-.
T Consensus 154 ~~ 155 (268)
T 1ako_A 154 IS 155 (268)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 13
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.21 E-value=1.1e-10 Score=113.97 Aligned_cols=68 Identities=26% Similarity=0.342 Sum_probs=46.5
Q ss_pred cCCceEEEEEEEEcCeEEEEEEeccCCCCCC----chhhHhhHHHHHHHHhCCCCCCCCCCCCCCCCccccccceEEecc
Q 011549 233 LGNKGSVSVSMSIEGTSFCFVAAHLASGEKK----GDEGRRNHQVSEIFKRTSFPRSPNDDDNPHPLTILGHDQIFWFGD 308 (483)
Q Consensus 233 ~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~----~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GD 308 (483)
..++|++.+++.+.+..++++|+||.+.... .....|..+...|.+.+.-.. ......+|++||
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~------------~~~~~pvIl~GD 195 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKN------------IPKDEIIFIGGD 195 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHT------------CCTTSEEEEEEE
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhC------------CCCCCeEEEEee
Confidence 4579999999999999999999999988532 123456667666654321000 012257999999
Q ss_pred cccc
Q 011549 309 LNYR 312 (483)
Q Consensus 309 LNYR 312 (483)
||-.
T Consensus 196 fN~~ 199 (301)
T 1zwx_A 196 LNVN 199 (301)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9944
No 14
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.20 E-value=4.2e-10 Score=107.24 Aligned_cols=60 Identities=17% Similarity=0.116 Sum_probs=42.8
Q ss_pred cCCceEEEEEEEEc--CeEEEEEEeccCCCCCCchhhHhhHHHHHHHHhCCCCCCCCCCCCCCCCccccccceEEecccc
Q 011549 233 LGNKGSVSVSMSIE--GTSFCFVAAHLASGEKKGDEGRRNHQVSEIFKRTSFPRSPNDDDNPHPLTILGHDQIFWFGDLN 310 (483)
Q Consensus 233 ~GNKGaV~ir~~i~--~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLN 310 (483)
...++++.+.+... +..+.++|+||.+.. ...|..+...|++.+. ..+.. +.+|++||||
T Consensus 107 ~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~r~~q~~~l~~~i~-------------~~~~~-~pvil~GDfN 168 (257)
T 3l1w_A 107 GCPRIALWGLFKETTQNTPFLVINVHLDHIS----AHARLAGMTVILEELH-------------DKIAQ-YPTLLMGDFN 168 (257)
T ss_dssp SSCCEEEEEEEEETTCSSCEEEEEEECCSSC----HHHHHHHHHHHHHHTH-------------HHHHH-SCEEEEEECC
T ss_pred cccceeEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHH-------------HHcCC-CCEEEEeeCC
Confidence 45788999999884 678999999998863 2357777777766531 00112 2799999999
No 15
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.15 E-value=2.6e-10 Score=112.29 Aligned_cols=60 Identities=15% Similarity=0.105 Sum_probs=40.5
Q ss_pred CCceEEEEEEE--EcCeEEEEEEeccCCCCCCchhhHhhHHHHHHHHhCC-CCCCCCCCCCCCCCccccccceEEecccc
Q 011549 234 GNKGSVSVSMS--IEGTSFCFVAAHLASGEKKGDEGRRNHQVSEIFKRTS-FPRSPNDDDNPHPLTILGHDQIFWFGDLN 310 (483)
Q Consensus 234 GNKGaV~ir~~--i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~-F~~~~~~~~~~~~~~i~~~d~vfw~GDLN 310 (483)
-+++++.+.|. ..+..|+++|+||.+.. ...|..+...|...+. +... ....+|++||||
T Consensus 118 ~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~i~~~~~~-------------~~~pvIl~GDfN 180 (298)
T 3mpr_A 118 LPRICSWGHFKCKDTGFEFLFFNLHMDHIG----KKARVESAFLVQEKMKELGRG-------------KNLPAILTGDFN 180 (298)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHHTTTT-------------SCCCEEEEEECS
T ss_pred cCceeEEEEEEEcCCCCEEEEEEecCCCCC----HHHHHHHHHHHHHHHHHHhcC-------------CCCcEEEEEeCC
Confidence 46788888988 46789999999998642 2346666666554431 1100 124689999999
No 16
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.13 E-value=2.7e-10 Score=113.91 Aligned_cols=68 Identities=25% Similarity=0.306 Sum_probs=47.6
Q ss_pred ccCCceEEEEEEEEcCeEEEEEEeccCCCCCC----chhhHhhHHHHHHHHhCCCCCCCCCCCCCCCCccccccceEEec
Q 011549 232 YLGNKGSVSVSMSIEGTSFCFVAAHLASGEKK----GDEGRRNHQVSEIFKRTSFPRSPNDDDNPHPLTILGHDQIFWFG 307 (483)
Q Consensus 232 ~~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~----~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~G 307 (483)
...+||.+.+++.+.+..|.++|+||.+.... .....|..+...|.+.+.-. .+.....||++|
T Consensus 146 ~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~------------~~~~~~pvIl~G 213 (317)
T 3i41_A 146 NDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKK------------NIPKDETVYIGG 213 (317)
T ss_dssp GGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHH------------TCCTTSCEEEEE
T ss_pred cccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHh------------ccCCCCeEEEEe
Confidence 35789999999999999999999999987532 12346777776665543100 011235789999
Q ss_pred cccc
Q 011549 308 DLNY 311 (483)
Q Consensus 308 DLNY 311 (483)
|||-
T Consensus 214 DfN~ 217 (317)
T 3i41_A 214 DLNV 217 (317)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9993
No 17
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=98.69 E-value=1.3e-08 Score=96.00 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=22.4
Q ss_pred EEEEeeCCCCCCCCCchhchhhhcCCCCCCcEEEEEEEeee
Q 011549 66 FVGTWNVAGRSPVGSLAVDLDEWLNLKDAADMYVLGFQEIV 106 (483)
Q Consensus 66 ~v~TWNV~g~~P~~~l~~dL~~wL~~~~~~DIyVIGlQEiv 106 (483)
-|+||||.|-... . ..|.+++.. ..||| |||||+.
T Consensus 2 rv~t~Nv~~~~~~--~-~~i~~~i~~-~~~DI--v~LQE~~ 36 (256)
T 2jc4_A 2 KITTWNVNSLNVR--L-PQVQNLLAD-NPPDI--LVLQELK 36 (256)
T ss_dssp EEEEEECSCHHHH--H-HHHHHHHHS-SCCSE--EEEECCC
T ss_pred EEEEEEcCCcHHH--H-HHHHHHHHh-cCCCE--EEEEeec
Confidence 5899999974321 1 235556642 36886 7889984
No 18
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=98.69 E-value=8.8e-08 Score=89.12 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=35.0
Q ss_pred EEEEEEEEcCeEEEEEEeccCCCCCCchhhHhhHHHHHHHHhCCCCCCCCCCCCCCCCccccccceEEecccccc
Q 011549 238 SVSVSMSIEGTSFCFVAAHLASGEKKGDEGRRNHQVSEIFKRTSFPRSPNDDDNPHPLTILGHDQIFWFGDLNYR 312 (483)
Q Consensus 238 aV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNYR 312 (483)
.+.+.+.+.+..+.++|+|++++.. . | .+..+++.+.- . ....+|++||||-.
T Consensus 97 ~i~~~~~~~~~~~~v~~~y~p~~~~----~-~--~~~~l~~~l~~----------~-----~~~~~Il~GDFN~~ 149 (238)
T 1vyb_A 97 YIMVKGSIQQEELTILNIYAPNTGA----P-R--FIKQVLSDLQR----------D-----LDSHTLIMGDFNTP 149 (238)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSH----H-H--HHHHHHHHTTT----------T-----CCTTEEEEEECSSC
T ss_pred EEEEEEEeCCCcEEEEEEecCCCCc----H-H--HHHHHHHHHHh----------c-----cCCCEEEEccCCCC
Confidence 5667888889999999999988642 1 1 12344444310 0 12478999999953
No 19
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=98.57 E-value=5.3e-08 Score=93.82 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=20.0
Q ss_pred ceEEEEEEEEc---CeEEEEEEeccCCCC
Q 011549 236 KGSVSVSMSIE---GTSFCFVAAHLASGE 261 (483)
Q Consensus 236 KGaV~ir~~i~---~t~~~FVn~HLaA~~ 261 (483)
.+...+.|... +..|.++|+||.+..
T Consensus 111 R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~ 139 (260)
T 2a40_B 111 REPAVVKFSSHSTKVKEFAIVALHSAPSD 139 (260)
T ss_dssp SCCEEEEEECTTSSSSEEEEEECCCCGGG
T ss_pred eCCEEEEEEeCCCCCceEEEEEecCCCCC
Confidence 55667777765 568999999999753
No 20
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.54 E-value=2.3e-07 Score=90.22 Aligned_cols=69 Identities=22% Similarity=0.266 Sum_probs=45.7
Q ss_pred cCCceEEEEEEEEcCeEEEEEEeccCCCCCC----chhhHhhHHHHHHHHhCCCCCCCCCCCCCCCCccccccceEEecc
Q 011549 233 LGNKGSVSVSMSIEGTSFCFVAAHLASGEKK----GDEGRRNHQVSEIFKRTSFPRSPNDDDNPHPLTILGHDQIFWFGD 308 (483)
Q Consensus 233 ~GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~----~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GD 308 (483)
...+|++.+++.+.+..+.++|+||.+.... .....|..+...|.+.+.-.. +.....+|++||
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~------------~~~~~pvil~GD 195 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKN------------IPNNEYVLIGGD 195 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHT------------CCTTSCEEEEEE
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc------------CCCCCEEEEEee
Confidence 3578999999999999999999999988431 123456667666654321000 011247899999
Q ss_pred ccccc
Q 011549 309 LNYRL 313 (483)
Q Consensus 309 LNYRI 313 (483)
||-.-
T Consensus 196 fN~~~ 200 (306)
T 2ddr_A 196 MNVNK 200 (306)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 99544
No 21
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=98.52 E-value=1.7e-08 Score=95.47 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=23.8
Q ss_pred ccccceeeeccCe-eEEeeccC-CCCCCCcccccceEEE
Q 011549 388 AWCDRILWYGKGV-KQLSYFRS-ESRFSDHRPVSALFST 424 (483)
Q Consensus 388 SWcDRIL~~~~~i-~~l~Y~s~-~~~~SDHkPV~a~F~v 424 (483)
+-.|+||+...-. ....+.-. +...|||.||.|.|.+
T Consensus 218 ~rID~i~~s~~~~~~~~~~~v~~~~~~SDH~pv~~~l~~ 256 (259)
T 2jc5_A 218 WRIDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVVEYDY 256 (259)
T ss_dssp ECCEEEEECHHHHTTEEEEEECCSSCCSSBCCEEEEESC
T ss_pred eEEEEEEECHHHHhHHhheeecCCCCCCCcccEEEEEec
Confidence 3489999974211 12233322 3578999999998864
No 22
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=98.51 E-value=5.2e-07 Score=85.34 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=23.1
Q ss_pred EEEEEeeCCCCCCCCCchhchhhhcCCCCCCcEEEEEEEeee
Q 011549 65 IFVGTWNVAGRSPVGSLAVDLDEWLNLKDAADMYVLGFQEIV 106 (483)
Q Consensus 65 I~v~TWNV~g~~P~~~l~~dL~~wL~~~~~~DIyVIGlQEiv 106 (483)
+-|.||||+|.... . ..|.+++.. ..||| |+|||+.
T Consensus 2 lrv~t~Nv~g~~~~--~-~~i~~~i~~-~~~Di--i~lQE~~ 37 (257)
T 2voa_A 2 LKIATFNVNSIRSR--L-HIVIPWLKE-NKPDI--LCMQETK 37 (257)
T ss_dssp EEEEEEECSCGGGT--H-HHHHHHHHH-HCCSE--EEEECCC
T ss_pred eEEEEEecCChHHH--H-HHHHHHHhh-cCCCE--EEEEEee
Confidence 46899999976432 1 134555532 26786 7899984
No 23
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=98.49 E-value=1.3e-07 Score=91.48 Aligned_cols=34 Identities=18% Similarity=0.088 Sum_probs=22.0
Q ss_pred ccceeeeccCe-eEEeeccC-CCCCCCcccccceEE
Q 011549 390 CDRILWYGKGV-KQLSYFRS-ESRFSDHRPVSALFS 423 (483)
Q Consensus 390 cDRIL~~~~~i-~~l~Y~s~-~~~~SDHkPV~a~F~ 423 (483)
.|+||+...-. ....+.-. +...|||.||.+.|.
T Consensus 249 ID~i~~s~~~~~~v~~~~v~~~~~~SDH~pv~~~l~ 284 (285)
T 2o3h_A 249 LDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 284 (285)
T ss_dssp CEEEEECGGGGGGEEEEEECTTCCSSSBCCEEEEEC
T ss_pred EEEEEECHHHHhhhhheEeeccCCCCCeecEEEEec
Confidence 89999975321 12233322 246899999999875
No 24
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=98.47 E-value=1.3e-06 Score=92.84 Aligned_cols=41 Identities=29% Similarity=0.325 Sum_probs=24.8
Q ss_pred eEEEEEEeeCCCCCCCCCc-hhchhhhcCCCCCCcEEEEEEEeee
Q 011549 63 LRIFVGTWNVAGRSPVGSL-AVDLDEWLNLKDAADMYVLGFQEIV 106 (483)
Q Consensus 63 l~I~v~TWNV~g~~P~~~l-~~dL~~wL~~~~~~DIyVIGlQEiv 106 (483)
-.+-|.||||+|......- ...|.+||.. ..||| |||||+-
T Consensus 148 ~~LKI~TwNVnGl~~~~kr~~~~i~~~I~~-~~pDI--VcLQEtk 189 (467)
T 2j63_A 148 RMYKFITWNVAGLRGLLKKNASALRAFMEA-EKPDV--LCLQETK 189 (467)
T ss_dssp TEEEEEEEECSCHHHHHHHCTTHHHHHHHH-HCCSE--EEEECCC
T ss_pred CCeEEEEEEcCCCcccccccHHHHHHHHHH-cCCCE--EEEEecc
Confidence 3578899999985311100 0135667642 26885 7899983
No 25
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=98.38 E-value=3.2e-07 Score=91.23 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=24.1
Q ss_pred eEEEEEEeeCCCCCCCCCchhchhhhcCCCCCCcEEEEEEEeee
Q 011549 63 LRIFVGTWNVAGRSPVGSLAVDLDEWLNLKDAADMYVLGFQEIV 106 (483)
Q Consensus 63 l~I~v~TWNV~g~~P~~~l~~dL~~wL~~~~~~DIyVIGlQEiv 106 (483)
-.+-|.||||+|..... ...|.+|+.. ..||| |||||+.
T Consensus 60 ~~lrv~t~Nv~g~~~~~--~~~i~~~i~~-~~~DI--i~LQE~~ 98 (318)
T 1hd7_A 60 ATLKICSWNVDGLRAWI--KKKGLDWVKE-EAPDI--LCLQETK 98 (318)
T ss_dssp CCEEEEEEECSSHHHHH--HTTHHHHHHH-HCCSE--EEEECCC
T ss_pred CceEEEEEecCcchhhh--hhhHHHHHHh-hCCCE--EEEEEcc
Confidence 35778999999753211 1124555532 26886 7899984
No 26
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=98.37 E-value=2e-07 Score=89.40 Aligned_cols=36 Identities=31% Similarity=0.555 Sum_probs=22.9
Q ss_pred EEEEEeeCCCCCCCCCchhchhhhcCCCCCCcEEEEEEEee
Q 011549 65 IFVGTWNVAGRSPVGSLAVDLDEWLNLKDAADMYVLGFQEI 105 (483)
Q Consensus 65 I~v~TWNV~g~~P~~~l~~dL~~wL~~~~~~DIyVIGlQEi 105 (483)
+-|.||||+|...... ..|.+|+.. ..||| |+|||+
T Consensus 4 l~i~s~Nv~g~~~~~~--~~l~~~i~~-~~~DI--v~LQEt 39 (265)
T 3g91_A 4 LKIISWNVNGLRAVHR--KGFLKWFME-EKPDI--LCLQEI 39 (265)
T ss_dssp EEEEEEECSCHHHHHH--HTHHHHHHH-HCCSE--EEEECC
T ss_pred cEEEEEEcCCchhhhh--hhHHHHHHh-cCCCE--EEEEec
Confidence 5689999998543211 125666642 26786 678998
No 27
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=98.26 E-value=1.6e-05 Score=78.40 Aligned_cols=42 Identities=33% Similarity=0.480 Sum_probs=28.4
Q ss_pred EEEEeeCCCCCCCCCc--hhchhhhcCCCCCCcEEEEEEEeeecCc
Q 011549 66 FVGTWNVAGRSPVGSL--AVDLDEWLNLKDAADMYVLGFQEIVPLK 109 (483)
Q Consensus 66 ~v~TWNV~g~~P~~~l--~~dL~~wL~~~~~~DIyVIGlQEiv~l~ 109 (483)
-|+|||+-|..+.++- ...+..|+.....+|| +.|||+..+.
T Consensus 6 kv~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DI--laLQEa~~~p 49 (261)
T 1sr4_B 6 KVATWNLQGSSAVNESKWNINVRQLLSGEQGADI--LMVQEAGSLP 49 (261)
T ss_dssp CEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSE--EEEESCCSCC
T ss_pred EEEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCE--EEEecCCCCC
Confidence 3899999996543311 1136778876457998 4679997653
No 28
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=98.03 E-value=1e-05 Score=77.87 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=24.3
Q ss_pred EEEEEeeCCCCCCCCCchhchhhhcCCCCCCcEEEEEEEee
Q 011549 65 IFVGTWNVAGRSPVGSLAVDLDEWLNLKDAADMYVLGFQEI 105 (483)
Q Consensus 65 I~v~TWNV~g~~P~~~l~~dL~~wL~~~~~~DIyVIGlQEi 105 (483)
+-|.||||||...... .|.+|+.. ..||| |+|||.
T Consensus 8 mki~s~Nvn~~r~~~~---~l~~~l~~-~~~DI--l~LQEt 42 (240)
T 2ei9_A 8 LRIGQINLGGAEDATR---ELPSIARD-LGLDI--VLVQEQ 42 (240)
T ss_dssp EEEEEEECTTCHHHHH---THHHHHHH-HTCSE--EEEESC
T ss_pred ceEEEEecCccHHHHH---HHHHHHHH-cCCCE--EEeecc
Confidence 6799999998753211 36778753 26786 578997
No 29
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.87 E-value=2.2e-06 Score=95.33 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred cCeEEEEEEeccCCCCCCchhhHhhHHHHHHHHhCC-CCCCCCCCCCCCCCccccccceEEecccccccccChHHHHHHH
Q 011549 246 EGTSFCFVAAHLASGEKKGDEGRRNHQVSEIFKRTS-FPRSPNDDDNPHPLTILGHDQIFWFGDLNYRLYLEDNLARHLI 324 (483)
Q Consensus 246 ~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~-F~~~~~~~~~~~~~~i~~~d~vfw~GDLNYRI~~~~~~v~~li 324 (483)
.+..|+++|+||.++....+ .|-.+...+++.+. +.+.... .....-.....||++|||| +.+.+.+.+++
T Consensus 545 ~g~~l~V~ntHL~~~p~~~~--~R~~Qa~~l~~~l~~~~~~~~~---~~~~~~~~~~pvIl~GDFN---s~P~s~~~~~l 616 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKFND--VKTFQVGVLLDHLETLLKEETS---HNFRQDIKKFPVLICGDFN---SYINSAVYELI 616 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEEeccccCCCCCc--hHHHHHHHHHHHHHHHHHHhcc---cccccccCCCceEEecccC---CCCCCcceEee
Confidence 46789999999998743222 24444434433321 1100000 0000001124789999999 55555665555
Q ss_pred Hhc
Q 011549 325 KKQ 327 (483)
Q Consensus 325 ~~~ 327 (483)
..+
T Consensus 617 ~~~ 619 (727)
T 4b8c_D 617 NTG 619 (727)
T ss_dssp ---
T ss_pred ecC
Confidence 444
No 30
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=97.82 E-value=0.00011 Score=76.47 Aligned_cols=76 Identities=11% Similarity=0.031 Sum_probs=42.8
Q ss_pred eEEEEEEeccCCCCCCchhhHhhHHHHHHHHhCC-CCCCCCCCCCCCCCccccccceEEecccccccccChHHHHHHHHh
Q 011549 248 TSFCFVAAHLASGEKKGDEGRRNHQVSEIFKRTS-FPRSPNDDDNPHPLTILGHDQIFWFGDLNYRLYLEDNLARHLIKK 326 (483)
Q Consensus 248 t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~-F~~~~~~~~~~~~~~i~~~d~vfw~GDLNYRI~~~~~~v~~li~~ 326 (483)
..|+++|.||..+.... ..|-.+...|++.+. +........... ..-...-.||++|||| ..+.+.+-+++.+
T Consensus 195 ~~l~V~nTHL~~~p~~~--~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~-~~~~~~~PvIl~GDFN---s~P~s~vy~~L~~ 268 (398)
T 3ngq_A 195 QLLIVANAHMHWDPEYS--DVKLIQTMMFVSEVKNILEKASSRPGSP-TADPNSIPLVLCADLN---SLPDSGVVEYLSN 268 (398)
T ss_dssp CEEEEEEEECCCCTTCH--HHHHHHHHHHHHHHHHHHCC--------------CCCEEEEEECS---CCTTSHHHHHHHH
T ss_pred cEEEEEEeCcCCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcccccc-cccCCCCceEEEeeCC---CCCCCHHHHHHhc
Confidence 46999999999976433 235566655554431 211100000000 0000123789999999 7788888888876
Q ss_pred cCh
Q 011549 327 QDW 329 (483)
Q Consensus 327 ~~~ 329 (483)
|..
T Consensus 269 G~v 271 (398)
T 3ngq_A 269 GGV 271 (398)
T ss_dssp TEE
T ss_pred CCC
Confidence 643
No 31
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=97.46 E-value=0.00055 Score=64.61 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=39.7
Q ss_pred CCceEEEEEEEEcCeEEEEEEeccCCCCCCchhhHhhHHHHHHHHhCCCCCCCCCCCCCCCCccccccceEEeccccc
Q 011549 234 GNKGSVSVSMSIEGTSFCFVAAHLASGEKKGDEGRRNHQVSEIFKRTSFPRSPNDDDNPHPLTILGHDQIFWFGDLNY 311 (483)
Q Consensus 234 GNKGaV~ir~~i~~t~~~FVn~HLaA~~~~~~~~rRn~d~~~I~~~~~F~~~~~~~~~~~~~~i~~~d~vfw~GDLNY 311 (483)
...|.+.+.+...+..+.++|+|++++... ..+..++..+++.+ ....+|++||||-
T Consensus 101 ~~~~~~~~~i~~~~~~~~v~~vy~p~~~~~---~~~~~~l~~~~~~~------------------~~~~~Ii~GDfN~ 157 (245)
T 1wdu_A 101 TTNNIVVVGIRTRAWEITLVSYYFEPDKPI---ESYLEQIKRVERKM------------------GPKRLIFGGDANA 157 (245)
T ss_dssp CCSSEEEEEEECSSCEEEEEEEECCTTSCS---HHHHHHHHHHHHTT------------------CSSSEEEEEECCC
T ss_pred ccCCEEEEEEEcCCCcEEEEEEEeCCCCCH---HHHHHHHHHHHHHh------------------CCCcEEEEecccc
Confidence 356788889888888999999999987532 22334455555431 1236899999994
No 32
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=96.49 E-value=0.014 Score=57.29 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=29.5
Q ss_pred EEEEEEeeCCCCCCCCCc--hhchhhhcCCCCCCcEEEEEEEeeecCcc
Q 011549 64 RIFVGTWNVAGRSPVGSL--AVDLDEWLNLKDAADMYVLGFQEIVPLKA 110 (483)
Q Consensus 64 ~I~v~TWNV~g~~P~~~l--~~dL~~wL~~~~~~DIyVIGlQEiv~l~~ 110 (483)
.+-|+|||+-|..+..+- ..+|...+...+++|| +++||+..+.+
T Consensus 15 ~~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DI--vaLQEag~~p~ 61 (262)
T 2f1n_A 15 DFRVATWNLQGASATTESKWNINVRQLISGENAVDI--LAVQEAGSPPS 61 (262)
T ss_dssp GCCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSE--EEEEEECSCCT
T ss_pred eeEEEEEEcCCCCCCCcccccccHHHHHccCCCCCE--EEEeecCCcCc
Confidence 345899999987653321 1246666655446997 57899976543
No 33
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=63.54 E-value=0.97 Score=42.00 Aligned_cols=38 Identities=11% Similarity=-0.063 Sum_probs=24.0
Q ss_pred cccccceeeeccCe-eEEeeccC-CCCCCCcccccceEEE
Q 011549 387 PAWCDRILWYGKGV-KQLSYFRS-ESRFSDHRPVSALFST 424 (483)
Q Consensus 387 PSWcDRIL~~~~~i-~~l~Y~s~-~~~~SDHkPV~a~F~v 424 (483)
.+-.|+||....-. ....+.-. ....|||.||.+.|.+
T Consensus 204 ~~rID~i~~s~~~~~~v~~~~v~~~~~~SDH~Pv~~~l~l 243 (245)
T 1wdu_A 204 QSRVDVTFCTEDMLDLIDGWRVDEDLVSSDHNGMVFNIRL 243 (245)
T ss_dssp EECCEEEEECGGGBTTEEEEEECTTSSSSSBCCEEEEECC
T ss_pred CCEEEEEEeChHHHhhccceEEcCCCCCCCcccEEEEEEe
Confidence 55699999865321 12222222 3589999999988753
No 34
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=52.85 E-value=5.8 Score=37.52 Aligned_cols=15 Identities=47% Similarity=0.704 Sum_probs=12.9
Q ss_pred CCCCCcccccceEEE
Q 011549 410 SRFSDHRPVSALFST 424 (483)
Q Consensus 410 ~~~SDHkPV~a~F~v 424 (483)
...|||.||.|.|.+
T Consensus 291 ~~~SDH~pv~a~l~~ 305 (306)
T 2ddr_A 291 NDYSDHYPVEATISM 305 (306)
T ss_dssp CCSCSSCCEEEEEEC
T ss_pred cCCCCCcceeEEEEe
Confidence 378999999999865
No 35
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=34.73 E-value=8.1 Score=40.86 Aligned_cols=17 Identities=35% Similarity=0.675 Sum_probs=14.5
Q ss_pred cccccceEEeccccccc
Q 011549 297 ILGHDQIFWFGDLNYRL 313 (483)
Q Consensus 297 i~~~d~vfw~GDLNYRI 313 (483)
+..++.||+=||||||=
T Consensus 374 L~~S~LVIFKGDLNYRK 390 (471)
T 3pt1_A 374 LQKSNLVIFKGDLNYRK 390 (471)
T ss_dssp HTTCSEEEEEHHHHHHH
T ss_pred HhhCcEEEEecchhhhh
Confidence 45679999999999984
No 36
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=39.69 E-value=8.9 Score=23.99 Aligned_cols=9 Identities=33% Similarity=0.973 Sum_probs=7.4
Q ss_pred Cccccccee
Q 011549 386 TPAWCDRIL 394 (483)
Q Consensus 386 ~PSWcDRIL 394 (483)
.|+|.|||=
T Consensus 8 r~nWs~RV~ 16 (26)
T 2yka_B 8 KTSWADRVR 16 (26)
Confidence 489999984
Done!