BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011550
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CQN|A Chain A, Crystal Structure Of The Lipocalin Domain Of Violaxanthin
De-Epoxidase (Vde) At Ph7
pdb|3CQN|B Chain B, Crystal Structure Of The Lipocalin Domain Of Violaxanthin
De-Epoxidase (Vde) At Ph7
pdb|3CQR|A Chain A, Crystal Structure Of The Lipocalin Domain Of Violaxanthin
De-Epoxidase (Vde) At Ph5
pdb|3CQR|B Chain B, Crystal Structure Of The Lipocalin Domain Of Violaxanthin
De-Epoxidase (Vde) At Ph5
Length = 185
Score = 314 bits (805), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 136/176 (77%), Positives = 160/176 (90%), Gaps = 1/176 (0%)
Query: 217 DLGEFPVPDPAILVKSFNIKDFNGKWYISSGLNPSFDTFDCQLHEFHTES-NKLIGNLSW 275
DLGEFP PDP++LV++FNI DFNGKWYI+SGLNP+FD FDCQLHEFHTE NKL+GN+SW
Sbjct: 2 DLGEFPAPDPSVLVQNFNISDFNGKWYITSGLNPTFDAFDCQLHEFHTEGDNKLVGNISW 61
Query: 276 RIRTPDGGFFTRSAMQRFFQDPIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVY 335
RI+T D GFFTRSA+Q+F QDP PG+LYNHDNEYLHY+DDWYILSSKI+N+P+DY+FVY
Sbjct: 62 RIKTLDSGFFTRSAVQKFVQDPNQPGVLYNHDNEYLHYQDDWYILSSKIENKPEDYIFVY 121
Query: 336 YRGSNDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKFIRTDNTCGPEP 391
YRG NDAWDGYGGA +YTRS +P +I+PELE+AAKS+GRDF+ FIRTDNTCGPEP
Sbjct: 122 YRGRNDAWDGYGGAVVYTRSSVLPNSIIPELEKAAKSIGRDFSTFIRTDNTCGPEP 177
>pdb|4B0Y|A Chain A, Determination Of X-Ray Structure Of Human Soul By
Molecular Replacement
Length = 227
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 415 LEGEVEKVGRTEMTLFQRLAEGFKELQKDEEKFL 448
LE +V R EMT+F R +GF QK++E+ L
Sbjct: 145 LESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLL 178
>pdb|3R8J|A Chain A, Crystal Structure Of Human Soul Protein (Orthorhombic
Form)
pdb|3R8J|B Chain B, Crystal Structure Of Human Soul Protein (Orthorhombic
Form)
pdb|3R8K|A Chain A, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|B Chain B, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|C Chain C, Crystal Structure Of Human Soul Protein (Hexagonal Form)
pdb|3R8K|D Chain D, Crystal Structure Of Human Soul Protein (Hexagonal Form)
Length = 212
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 415 LEGEVEKVGRTEMTLFQRLAEGFKELQKDEEKFL 448
LE +V R EMT+F R +GF QK++E+ L
Sbjct: 126 LESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLL 159
>pdb|3QNI|A Chain A, Crystal Structure Of Human Pacsin 1 F-Bar Domain
pdb|3QNI|B Chain B, Crystal Structure Of Human Pacsin 1 F-Bar Domain
Length = 307
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 48/83 (57%), Gaps = 7/83 (8%)
Query: 372 SVGRDFNKFIRTDNTCGPEPPLVERLEKKVEEGERTIIKEVEQLEGEVEKVGRTEMTLFQ 431
++ R+ N +T+ + PE ++L+ KV++ ++ + K E+ E +E VG+T +
Sbjct: 170 AMTREMNS--KTEQSVTPEQQ--KKLQDKVDKCKQDVQKTQEKYEKVLEDVGKTTPQYME 225
Query: 432 RLAEGFKELQKDEEK---FLREL 451
+ + F++ Q+ EEK FL+E+
Sbjct: 226 NMEQVFEQCQQFEEKRLVFLKEV 248
>pdb|3HAI|A Chain A, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|B Chain B, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|C Chain C, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|D Chain D, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
Length = 308
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 48/83 (57%), Gaps = 7/83 (8%)
Query: 372 SVGRDFNKFIRTDNTCGPEPPLVERLEKKVEEGERTIIKEVEQLEGEVEKVGRTEMTLFQ 431
++ R+ N +T+ + PE ++L+ KV++ ++ + K E+ E +E VG+T +
Sbjct: 170 AMTREMNS--KTEQSVTPEQQ--KKLQDKVDKCKQDVQKTQEKYEKVLEDVGKTTPQYME 225
Query: 432 RLAEGFKELQKDEEK---FLREL 451
+ + F++ Q+ EEK FL+E+
Sbjct: 226 NMEQVFEQCQQFEEKRLVFLKEV 248
>pdb|3HAH|A Chain A, Crystal Structure Of Human Pacsin1 F-Bar Domain (C2
Lattice)
pdb|3HAH|B Chain B, Crystal Structure Of Human Pacsin1 F-Bar Domain (C2
Lattice)
Length = 325
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 48/83 (57%), Gaps = 7/83 (8%)
Query: 372 SVGRDFNKFIRTDNTCGPEPPLVERLEKKVEEGERTIIKEVEQLEGEVEKVGRTEMTLFQ 431
++ R+ N +T+ + PE ++L+ KV++ ++ + K E+ E +E VG+T +
Sbjct: 170 AMTREMNS--KTEQSVTPEQQ--KKLQDKVDKCKQDVQKTQEKYEKVLEDVGKTTPQYME 225
Query: 432 RLAEGFKELQKDEEK---FLREL 451
+ + F++ Q+ EEK FL+E+
Sbjct: 226 NMEQVFEQCQQFEEKRLVFLKEV 248
>pdb|2QG7|A Chain A, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|B Chain B, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|D Chain D, Plasmodium Vivax Ethanolamine Kinase Pv091845
pdb|2QG7|E Chain E, Plasmodium Vivax Ethanolamine Kinase Pv091845
Length = 458
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 353 TRSKTVPETIVPELERAAKSVGRDFNKFIRTDNTCGPEPPLVERLEKKVEEGERTIIKEV 412
TR+ +V E+ P R+ SVG ++ T N G P L ++ EGE K
Sbjct: 13 TRANSVAESSPPFPLRSKTSVGSTNSQITETKNKQGVYPITESNL--RILEGEDRSEKAK 70
Query: 413 EQLEGEVEKVGRTEMTLF 430
E L+ V V E TL+
Sbjct: 71 ELLKKYVSNVFENEKTLY 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,578,732
Number of Sequences: 62578
Number of extensions: 635018
Number of successful extensions: 1799
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1782
Number of HSP's gapped (non-prelim): 33
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)