BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011550
(483 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SM43|VDE_SPIOL Violaxanthin de-epoxidase, chloroplastic OS=Spinacia oleracea
GN=VDE1 PE=1 SV=2
Length = 472
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/491 (66%), Positives = 387/491 (78%), Gaps = 27/491 (5%)
Query: 1 MALAASSICLYGNERIG--NPCSRTGFAITEKSQNRRMVYYRGIVTLKIKSNGKKSTCSQ 58
MAL A SIC+ +E G N S F + Q + ++ I+ N +K +C++
Sbjct: 1 MALVARSICVSYDEIAGICNNVSHRNF--KKWVQWKNPFLFQDDARRNIRFNDRKLSCTK 58
Query: 59 LMRSYRNCCKIGLRCSNLVSGRREKVSSISNTGTTIPEAKEVLKNLVHPVPNVLKEWS-- 116
+ + S + + S + + G + +K V+ N V P K+W+
Sbjct: 59 FIGA-----------SEKLQHSKSPKSGLISCGWEVNSSK-VVSNAVIP-----KKWNLL 101
Query: 117 QLQLINVAGVLACMFLVIPSAGAVDALKTCTCLLRECRLELAECISNPACAANVACLQTC 176
+L+++ V ++AC F V+ SA AVDALKTCTCLL+ECR+ELA+CI+NP+CAANVACLQTC
Sbjct: 102 KLKVVEVTAIVACTFFVMSSAQAVDALKTCTCLLKECRIELAKCIANPSCAANVACLQTC 161
Query: 177 NNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDLGEFPVPDPAILVKSFNIK 236
NNRPDETECQIKCGDLF N VVDEFNECAVSRKKCVPQKSD+GEFPVPDP++LVKSFN+
Sbjct: 162 NNRPDETECQIKCGDLFANKVVDEFNECAVSRKKCVPQKSDVGEFPVPDPSVLVKSFNMA 221
Query: 237 DFNGKWYISSGLNPSFDTFDCQLHEFHTESNKLIGNLSWRIRTPDGGFFTRSAMQRFFQD 296
DFNGKW+ISSGLNP+FD FDCQLHEFH E KL+GNLSWRI+TPDGGFFTR+A+Q+F QD
Sbjct: 222 DFNGKWFISSGLNPTFDAFDCQLHEFHLEDGKLVGNLSWRIKTPDGGFFTRTAVQKFAQD 281
Query: 297 PIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSK 356
P PG+LYNHDN YLHY+DDWYILSSKI+N+PDDYVFVYYRG NDAWDGYGGAFLYTRS
Sbjct: 282 PSQPGMLYNHDNAYLHYQDDWYILSSKIENQPDDYVFVYYRGRNDAWDGYGGAFLYTRSA 341
Query: 357 TVPETIVPELERAAKSVGRDFNKFIRTDNTCGPEPPLVERLEKKVEEGERTIIKEVEQLE 416
TVPE IVPEL RAA+SVG+DFNKFIRTDNTCGPEPPLVERLEK VEEGERTIIKEVEQLE
Sbjct: 342 TVPENIVPELNRAAQSVGKDFNKFIRTDNTCGPEPPLVERLEKTVEEGERTIIKEVEQLE 401
Query: 417 GEV----EKVGRTEMTLFQRLAEGFKELQKDEEKFLRELSKEEMDLLSELKMEASEVENL 472
GE+ EKVG+TEMTLFQRL EGF+ELQKDEE FL+EL+KEE +LL +LKMEA EVE L
Sbjct: 402 GEIEGDLEKVGKTEMTLFQRLLEGFQELQKDEEYFLKELNKEERELLEDLKMEAGEVEKL 461
Query: 473 FGRALPVKKIR 483
FGRALP++K+R
Sbjct: 462 FGRALPIRKLR 472
>sp|Q39249|VDE_ARATH Violaxanthin de-epoxidase, chloroplastic OS=Arabidopsis thaliana
GN=VDE1 PE=1 SV=1
Length = 462
Score = 610 bits (1574), Expect = e-174, Method: Compositional matrix adjust.
Identities = 290/392 (73%), Positives = 341/392 (86%), Gaps = 5/392 (1%)
Query: 97 AKEVLKNLVHPVPNVLKEWSQLQLINVAGVLACMFLVIPSAGAVDALKTCTCLLRECRLE 156
+K + + P N LKE + L+ + GVLAC FL++PSA AVDALKTC CLL+ CR+E
Sbjct: 71 SKGIFDIVPLPSKNELKELTAPLLLKLVGVLACAFLIVPSADAVDALKTCACLLKGCRIE 130
Query: 157 LAECISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKS 216
LA+CI+NPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVP+KS
Sbjct: 131 LAKCIANPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPRKS 190
Query: 217 DLGEFPVPDPAILVKSFNIKDFNGKWYISSGLNPSFDTFDCQLHEFHTES-NKLIGNLSW 275
DLGEFP PDP++LV++FNI DFNGKWYI+SGLNP+FD FDCQLHEFHTE NKL+GN+SW
Sbjct: 191 DLGEFPAPDPSVLVQNFNISDFNGKWYITSGLNPTFDAFDCQLHEFHTEGDNKLVGNISW 250
Query: 276 RIRTPDGGFFTRSAMQRFFQDPIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVY 335
RI+T D GFFTRSA+Q+F QDP PG+LYNHDNEYLHY+DDWYILSSKI+N+P+DY+FVY
Sbjct: 251 RIKTLDSGFFTRSAVQKFVQDPNQPGVLYNHDNEYLHYQDDWYILSSKIENKPEDYIFVY 310
Query: 336 YRGSNDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKFIRTDNTCGPEPPLVE 395
YRG NDAWDGYGGA +YTRS +P +I+PELE+AAKS+GRDF+ FIRTDNTCGPEP LVE
Sbjct: 311 YRGRNDAWDGYGGAVVYTRSSVLPNSIIPELEKAAKSIGRDFSTFIRTDNTCGPEPALVE 370
Query: 396 RLEKKVEEGER----TIIKEVEQLEGEVEKVGRTEMTLFQRLAEGFKELQKDEEKFLREL 451
R+EK VEEGER + + E++E EVEKVGRTEMTLFQRLAEGF EL++DEE F+REL
Sbjct: 371 RIEKTVEEGERIIVKEVEEIEEEVEKEVEKVGRTEMTLFQRLAEGFNELKQDEENFVREL 430
Query: 452 SKEEMDLLSELKMEASEVENLFGRALPVKKIR 483
SKEEM+ L E+KMEASEVE LFG+ALP++K+R
Sbjct: 431 SKEEMEFLDEIKMEASEVEKLFGKALPIRKVR 462
>sp|Q40593|VDE_TOBAC Violaxanthin de-epoxidase, chloroplastic OS=Nicotiana tabacum
GN=VDE1 PE=2 SV=1
Length = 478
Score = 603 bits (1554), Expect = e-171, Method: Compositional matrix adjust.
Identities = 300/446 (67%), Positives = 356/446 (79%), Gaps = 4/446 (0%)
Query: 38 YYRGIVTLKIKSNGKKSTCSQLMRSYRNCCKIGLRCSNLVSGRREKVSSISNTGTTIPEA 97
Y+ IV KI S+ + +S R CC + R L S + +S + +P+
Sbjct: 37 YFGSIVVAKICSS--RRIPRYFRKSPRICCGLDSRGLQLFSHGKHNLSPAHSINQNVPKG 94
Query: 98 KEVLKNLVHPVPNVLKEWSQLQLINVAGVLACMFLVIPSAGAVDALKTCTCLLRECRLEL 157
K V ++W Q + + + V A AVDALKTCTCLL+ECRLEL
Sbjct: 95 NSGCKFPKDVALMVWEKWGQFAKTAIVAIF--ILSVASKADAVDALKTCTCLLKECRLEL 152
Query: 158 AECISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSD 217
A+CISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVP+KSD
Sbjct: 153 AKCISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPRKSD 212
Query: 218 LGEFPVPDPAILVKSFNIKDFNGKWYISSGLNPSFDTFDCQLHEFHTESNKLIGNLSWRI 277
+G+FPVPDP++LV+ F++KDF+GKW+I+ GLNP+FD FDCQLHEFHTE NKL+GNLSWRI
Sbjct: 213 VGDFPVPDPSVLVQKFDMKDFSGKWFITRGLNPTFDAFDCQLHEFHTEENKLVGNLSWRI 272
Query: 278 RTPDGGFFTRSAMQRFFQDPIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVYYR 337
RTPDGGFFTRSA+Q+F QDP +PGILYNHDNEYL Y+DDWYILSSK++N P+DY+FVYY+
Sbjct: 273 RTPDGGFFTRSAVQKFVQDPKYPGILYNHDNEYLLYQDDWYILSSKVENSPEDYIFVYYK 332
Query: 338 GSNDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKFIRTDNTCGPEPPLVERL 397
G NDAWDGYGG+ LYTRS +PE+I+PEL+ AA+ VGRDFN FI+TDNTCGPEPPLVERL
Sbjct: 333 GRNDAWDGYGGSVLYTRSAVLPESIIPELQTAAQKVGRDFNTFIKTDNTCGPEPPLVERL 392
Query: 398 EKKVEEGERTIIKEVEQLEGEVEKVGRTEMTLFQRLAEGFKELQKDEEKFLRELSKEEMD 457
EKKVEEGERTIIKEVE++E EVEKV E+TLF +L EGFKELQ+DEE FLRELSKEEMD
Sbjct: 393 EKKVEEGERTIIKEVEEIEEEVEKVRDKEVTLFSKLFEGFKELQRDEENFLRELSKEEMD 452
Query: 458 LLSELKMEASEVENLFGRALPVKKIR 483
+L LKMEA+EVE LFGRALP++K+R
Sbjct: 453 VLDGLKMEATEVEKLFGRALPIRKLR 478
>sp|Q40251|VDE_LACSA Violaxanthin de-epoxidase, chloroplastic OS=Lactuca sativa GN=VDE1
PE=1 SV=1
Length = 473
Score = 588 bits (1515), Expect = e-167, Method: Compositional matrix adjust.
Identities = 291/448 (64%), Positives = 357/448 (79%), Gaps = 16/448 (3%)
Query: 41 GIVTLKIKSNGKKSTCSQLMRSYRNCCKIGLRCSNLVSGRREKVSSISNTGTTIPEAKEV 100
I+ +KI+SN +L SY+ S S + S I + T+ E +
Sbjct: 37 NIIMMKIRSNNGYFNSFRLFTSYKTS-------SFSDSSHCKDKSQICSIDTSFEEIQRF 89
Query: 101 LKNLVHPVPNVL-KEWSQLQLINVAGVLACMFLVIPSAGAVDALKTCTCLLRECRLELAE 159
+L + +L K+W Q I +A VL C F+++P AVDALKTC CLL+ECR+ELA+
Sbjct: 90 --DLKRGMTLILEKQWRQF--IQLAIVLVCTFVIVPRVDAVDALKTCACLLKECRIELAK 145
Query: 160 CISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDLG 219
CI+NP+CAANVACLQTCNNRPDETECQIKCGDLFENSVVD+FNECAVSRKKCVP+KSD+G
Sbjct: 146 CIANPSCAANVACLQTCNNRPDETECQIKCGDLFENSVVDQFNECAVSRKKCVPRKSDVG 205
Query: 220 EFPVPDPAILVKSFNIKDFNGKWYISSGLNPSFDTFDCQLHEFHTESNKLIGNLSWRIRT 279
EFPVPD +V++FN+KDF+GKWYI+SGLNP+FD FDCQLHEFH E++KL+GNL+WRI+T
Sbjct: 206 EFPVPDRNAVVQNFNMKDFSGKWYITSGLNPTFDAFDCQLHEFHMENDKLVGNLTWRIKT 265
Query: 280 PDGGFFTRSAMQRFFQDPIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGS 339
DGGFFTRSA+Q F QDP PG LYNHDNE+LHY+DDWYILSS+I+N+PDDY+FVYYRG
Sbjct: 266 LDGGFFTRSAVQTFVQDPDLPGALYNHDNEFLHYQDDWYILSSQIENKPDDYIFVYYRGR 325
Query: 340 NDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKFIRTDNTCGPEPPLVERLEK 399
NDAWDGYGG+ +YTRS T+PE+I+P L++AAKSVGRDFN FI TDN+CGPEPPLVERLEK
Sbjct: 326 NDAWDGYGGSVIYTRSPTLPESIIPNLQKAAKSVGRDFNNFITTDNSCGPEPPLVERLEK 385
Query: 400 KVEEGERTIIKEVEQLEGEVEKVGR----TEMTLFQRLAEGFKELQKDEEKFLRELSKEE 455
EEGE+ +IKE ++E EVEK TEMTLFQRL EGFKELQ+DEE F+RELSKEE
Sbjct: 386 TAEEGEKLLIKEAVEIEEEVEKEVEKVRDTEMTLFQRLLEGFKELQQDEENFVRELSKEE 445
Query: 456 MDLLSELKMEASEVENLFGRALPVKKIR 483
++L+EL+MEA+EVE LFGRALP++K+R
Sbjct: 446 KEILNELQMEATEVEKLFGRALPIRKLR 473
>sp|Q99PL5|RRBP1_MOUSE Ribosome-binding protein 1 OS=Mus musculus GN=Rrbp1 PE=2 SV=2
Length = 1605
Score = 34.3 bits (77), Expect = 2.4, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 382 RTDNTCGPEPPLVERLEKKVEEGERTIIKEVEQLE-----GEVEKVGRTEMTLFQRLAEG 436
RT+ T E ++L + EE +RT + E+LE G +E G+ E+T + E
Sbjct: 1491 RTEATLEAEQTRRQKLTAEFEEAQRTACRIQEELEKLRAAGPLESSGKEEITQLKERLEK 1550
Query: 437 FKELQKDEEKF---LRELSKEEMDLLSELKMEASEVENLFGRA 476
K L D + L+EL K + L++ K +++ G+A
Sbjct: 1551 EKRLTSDLGRAAIKLQELLKTTQEQLTKEKDTVKKLQEQLGKA 1593
>sp|Q9VQ36|FRITZ_DROME WD repeat-containing and planar cell polarity effector protein
fritz OS=Drosophila melanogaster GN=frtz PE=2 SV=1
Length = 951
Score = 33.1 bits (74), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 41 GIVTLKIKSNGKKS-TCSQLMRSYRNCCKIGLRCSNLVSGRREKVSSISNTGTTIPEAKE 99
I+ + ++NG S TC +RS + C + CS+++ G+ + + G + P++++
Sbjct: 603 AIIHEEDRANGNLSLTCD--LRS-ESACSLS-TCSDMLRGQGAGTAPETGLGASQPQSQQ 658
Query: 100 VLKNLVHPVPNVLKEWSQLQLINV 123
VLKN V P+P+ + ++I +
Sbjct: 659 VLKNYVPPLPSFKSKVFNAEMIKI 682
>sp|Q57775|Y329_METJA Uncharacterized protein MJ0329 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0329 PE=4 SV=1
Length = 616
Score = 33.1 bits (74), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 395 ERLEKKVEEGERTIIKEVEQLEGEVEKVGRTEMTLF--------QRLAEGFKELQKDEEK 446
E +K +E+ +++ K + +LE +K G+ M F +RL G+ EL +D ++
Sbjct: 396 EEKQKLLEKKRKSLEKIISKLEKVGDKFGKKSMENFVNWILETYERL--GYNELMQDWDE 453
Query: 447 FLRELSKEEMDLL 459
LRE ++EE+D+
Sbjct: 454 LLREFTREEVDMF 466
>sp|O75095|MEGF6_HUMAN Multiple epidermal growth factor-like domains protein 6 OS=Homo
sapiens GN=MEGF6 PE=1 SV=4
Length = 1541
Score = 32.3 bits (72), Expect = 8.4, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 146 CTCLL-RECRLELAECISNPACAANVACLQTCNNRPDETECQIKCGDLF--ENSVVDEFN 202
CTC E + CI CA + C Q C N P EC G + ++ +
Sbjct: 355 CTCPRGYELDTDQRTCIDVDDCADSPCCQQVCTNNPGGYECGCYAGYRLSADGCGCEDVD 414
Query: 203 ECAVSRKKC 211
ECA SR C
Sbjct: 415 ECASSRGGC 423
>sp|E7FBF7|FCHO1_DANRE FCH domain only protein 1 OS=Danio rerio GN=fcho1 PE=1 SV=2
Length = 897
Score = 32.3 bits (72), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 398 EKKVEEGERTIIKEVEQLEGEVEKVGRTEMTLFQRLAEGFKELQKDEEKFLREL 451
+K++E+ E K E G +EK R Q+++E ++ Q EE LR++
Sbjct: 158 QKELEKAELKCKKAAESFAGSIEKFNRAGGDFEQKMSESAQKFQDIEEAHLRQM 211
>sp|Q7N3Q4|BTUD_PHOLL Vitamin B12 import ATP-binding protein BtuD OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=btuD PE=3
SV=2
Length = 253
Score = 32.3 bits (72), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 101 LKNLVHPVPNVLKEWSQLQLINVAG-----VLACMFLVIPSAGAVDALKTCTCLLRECRL 155
++N + P+ ++++ Q+ +I G +LACM ++P +GA+D + C C+L
Sbjct: 13 VRNRLMPLTALVQQGEQIHIIGPNGSGKSTLLACMAGILPYSGAIDLQQKCLSQYSHCQL 72
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,482,448
Number of Sequences: 539616
Number of extensions: 8400770
Number of successful extensions: 26984
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 26716
Number of HSP's gapped (non-prelim): 381
length of query: 483
length of database: 191,569,459
effective HSP length: 121
effective length of query: 362
effective length of database: 126,275,923
effective search space: 45711884126
effective search space used: 45711884126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)