Query 011550
Match_columns 483
No_of_seqs 172 out of 986
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 02:36:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02372 violaxanthin de-epoxi 100.0 1E-113 3E-118 876.6 34.6 392 89-480 57-455 (455)
2 PF07137 VDE: Violaxanthin de- 100.0 2E-51 4.4E-56 386.6 17.0 198 200-397 1-198 (198)
3 PF08212 Lipocalin_2: Lipocali 99.9 3.1E-27 6.7E-32 213.5 15.7 141 233-385 1-143 (143)
4 KOG4824 Apolipoprotein D/Lipoc 99.9 6.3E-26 1.4E-30 214.9 12.6 172 209-389 21-203 (224)
5 COG3040 Blc Bacterial lipocali 99.9 1.4E-24 3.1E-29 201.7 15.6 146 228-386 26-172 (174)
6 PRK10477 outer membrane lipopr 99.9 1.9E-24 4.2E-29 202.5 15.2 147 227-386 28-175 (177)
7 PF00061 Lipocalin: Lipocalin 99.6 4E-15 8.7E-20 130.2 6.4 136 239-385 1-142 (144)
8 PF03973 Triabin: Triabin; In 99.2 4E-11 8.8E-16 110.7 10.0 121 227-357 15-138 (148)
9 PF02087 Nitrophorin: Nitropho 98.9 4.1E-08 8.8E-13 92.2 13.2 153 228-393 6-175 (178)
10 PF11032 ApoM: Apolipoprotein 97.6 0.001 2.2E-08 64.2 12.6 148 218-385 20-177 (186)
11 PLN02372 violaxanthin de-epoxi 79.6 6.5 0.00014 42.6 7.7 23 122-144 87-109 (455)
12 COG0497 RecN ATPase involved i 55.4 26 0.00057 39.5 6.3 101 363-468 282-393 (557)
13 PRK10869 recombination and rep 53.2 24 0.00052 39.4 5.7 55 413-467 337-391 (553)
14 PRK00409 recombination and DNA 49.2 47 0.001 38.8 7.4 35 346-380 487-521 (782)
15 TIGR01069 mutS2 MutS2 family p 48.7 47 0.001 38.8 7.3 32 347-378 483-514 (771)
16 PF07851 TMPIT: TMPIT-like pro 48.1 46 0.001 35.2 6.5 32 437-468 48-79 (330)
17 PF04111 APG6: Autophagy prote 42.9 84 0.0018 32.8 7.4 55 401-459 55-109 (314)
18 PF05633 DUF793: Protein of un 40.3 68 0.0015 34.7 6.4 34 428-461 355-388 (389)
19 COG4068 Uncharacterized protei 40.2 13 0.00028 30.2 0.8 33 169-203 11-45 (64)
20 PF11403 Yeast_MT: Yeast metal 39.2 9.4 0.0002 27.7 -0.1 27 152-178 6-32 (40)
21 KOG3688 Cyclic GMP phosphodies 38.4 25 0.00055 38.7 2.8 34 432-465 292-325 (554)
22 TIGR02833 spore_III_AB stage I 36.0 73 0.0016 30.2 5.3 67 390-464 48-115 (170)
23 TIGR00634 recN DNA repair prot 35.6 68 0.0015 35.8 5.7 72 398-469 317-398 (563)
24 PF04405 ScdA_N: Domain of Unk 33.5 58 0.0012 25.7 3.5 44 363-415 12-55 (56)
25 PF00356 LacI: Bacterial regul 33.4 20 0.00043 27.1 0.8 27 352-378 20-46 (46)
26 PF04282 DUF438: Family of unk 32.4 96 0.0021 25.9 4.7 47 427-474 3-56 (71)
27 PF14747 DUF4473: Domain of un 31.9 3.1E+02 0.0066 23.0 7.9 68 395-462 10-78 (82)
28 PF05278 PEARLI-4: Arabidopsis 31.7 2.6E+02 0.0057 29.0 8.7 102 356-471 144-249 (269)
29 KOG2129 Uncharacterized conser 31.3 1.3E+02 0.0029 33.1 6.7 58 394-452 262-334 (552)
30 COG3233 Predicted deacetylase 30.8 97 0.0021 31.3 5.3 81 361-443 18-108 (233)
31 PF11867 DUF3387: Domain of un 29.6 78 0.0017 33.0 4.7 69 386-454 192-275 (335)
32 PRK08307 stage III sporulation 28.9 1.1E+02 0.0025 28.9 5.3 67 390-464 49-116 (171)
33 KOG1733 Mitochondrial import i 27.5 25 0.00054 30.8 0.5 21 180-204 60-80 (97)
34 PF09548 Spore_III_AB: Stage I 26.2 1.3E+02 0.0028 28.3 5.2 16 390-405 48-63 (170)
35 PRK11032 hypothetical protein; 25.1 1.6E+02 0.0034 28.2 5.5 51 393-449 11-64 (160)
36 TIGR01069 mutS2 MutS2 family p 24.5 2.2E+02 0.0048 33.4 7.6 15 364-378 483-497 (771)
37 COG3352 FlaC Putative archaeal 24.4 2.6E+02 0.0057 26.8 6.7 74 404-479 73-147 (157)
38 PF03962 Mnd1: Mnd1 family; I 24.1 3.8E+02 0.0081 26.0 8.0 16 461-476 168-183 (188)
39 PF02050 FliJ: Flagellar FliJ 23.3 3.8E+02 0.0082 22.1 7.0 23 442-464 98-120 (123)
40 PRK00409 recombination and DNA 22.6 2.5E+02 0.0055 33.0 7.6 17 364-380 488-504 (782)
41 PF01765 RRF: Ribosome recycli 22.0 5.1E+02 0.011 24.2 8.3 69 360-435 54-126 (165)
42 PF15079 DUF4546: Domain of un 21.9 2.2E+02 0.0048 27.8 5.7 26 427-460 81-106 (205)
43 PF14412 AHH: A nuclease famil 21.3 1.2E+02 0.0026 26.0 3.6 58 362-419 29-105 (109)
44 PF05266 DUF724: Protein of un 21.0 7E+02 0.015 24.3 9.1 68 363-447 74-143 (190)
No 1
>PLN02372 violaxanthin de-epoxidase
Probab=100.00 E-value=1.2e-113 Score=876.62 Aligned_cols=392 Identities=73% Similarity=1.271 Sum_probs=380.3
Q ss_pred cCCCCchhhhhhhhccccCchhhHhhhhhhhhHhhhhHhhhheeecCCcchhccccccceecccChHHHhhhcCCcchhh
Q 011550 89 NTGTTIPEAKEVLKNLVHPVPNVLKEWSQLQLINVAGVLACMFLVIPSAGAVDALKTCTCLLRECRLELAECISNPACAA 168 (483)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~Cl~~~C~~~~~~C~~dp~C~~ 168 (483)
+++..++++++++.++....++.+++|+++++++++++++|+++++|+|+|+|+++|++||++||+.|+++|++||+|++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~~Cllk~C~~qla~Ci~nP~C~~ 136 (455)
T PLN02372 57 SASLRKSDSEEEFDFVGLSSLNELKEWSRLLLLKALGLLACALLSVPSADAADALKTCACLLKECRLELAKCIANPKCAA 136 (455)
T ss_pred cccccccchhhhhhccchhhcchhhhhhHHHHHHHHHHHHHhhccCCchhhhhhhhhhhhHHhhhhHHHHHHhcChhhHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCCCCcchhhhhhhhcCchhhhHHHHhhhcccCccccCCCCCCCCCCCcccccCCCccccCccceeeeeec
Q 011550 169 NVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDLGEFPVPDPAILVKSFNIKDFNGKWYISSGL 248 (483)
Q Consensus 169 ~l~Cl~~C~~~p~e~~C~~rC~~~ye~~~l~~fllCal~~~~Cv~~~~d~g~~P~P~p~~tv~nFDL~rF~GrWYEIAg~ 248 (483)
||+|||+|+||||||+||||||++|||++|++|+.|+|++|+|||+++|+|++|+|+|+++|++||.+.|.|+||+++|+
T Consensus 137 ~l~CL~~C~~rPdEq~CqirCg~~fen~~vd~fn~Cav~~k~CV~~~ad~ge~Pvp~p~~lv~~F~~~~f~GsWyivaGl 216 (455)
T PLN02372 137 NVACLQTCNGRPDETECQIKCGDLFENKVVDEFNECAVTRKKCVPQKSDDGEFPVPDPSALVQNFDTADFNGRWYITSGL 216 (455)
T ss_pred HhHHHHhcCCCCCccchhhhhHhhhccHhHHHHHhhhhhccccccccccCCCCCCCChHHHhhccCccccCccEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCeEEEEEEc-CCceEEEeEeeEeCCCCcEEEEeeEEEEeeCCCCCeeEEEecCCCcCcccceEEEEeccCCC
Q 011550 249 NPSFDTFDCQLHEFHTE-SNKLIGNLSWRIRTPDGGFFTRSAMQRFFQDPIHPGILYNHDNEYLHYKDDWYILSSKIQNE 327 (483)
Q Consensus 249 n~~fd~f~Cq~a~Ytl~-~dg~v~vvNsrv~tpdG~~~~~~G~arfv~dp~~PGkL~vsfne~~~f~~dy~VLdTDY~~~ 327 (483)
|++||.|+||.+.|+.. +++++++++|++++|||+|++++.+++|++||.+||.|++++|+++||++|||||+...+++
T Consensus 217 NP~yD~FdCQ~h~F~~~~~~kl~~nl~wRv~tpdGgF~~Rs~vq~fvqd~~~P~il~n~~NeyLhyqddWyIl~~k~~~~ 296 (455)
T PLN02372 217 NKTFDTFDCQLHEFTAEDPDKLVGNLNWRINTPDGGFFTRSAVQRFVQDPNQPGILYNHDNEYLHYQDDWYILSSKIENK 296 (455)
T ss_pred CCCCCcccccceeeecCCCCceEEeeEEEEecCCCceEeecceeeeeccCCCCceEEcCCcceeecccceEEeeccccCC
Confidence 99999999999999987 67799999999999999999999999999999999999999999999999999999987777
Q ss_pred CCCeEEEEEEccCCCCCCcceEEEEeCCCCCCchHHHHHHHHHHHcCCCCCCeEEcCCCCCCCCchhHHHHHHHhhhhhh
Q 011550 328 PDDYVFVYYRGSNDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKFIRTDNTCGPEPPLVERLEKKVEEGERT 407 (483)
Q Consensus 328 ~ddYAIVYyCg~~~a~~~yegAWLLSRdptLp~eiiekv~a~Lks~GiD~skfi~TdQsC~~e~pL~~~~~~~~~~~~~~ 407 (483)
+++|.+|||.|.++||++|+||+||||++.+|++++++++.++++.|+|+++|+.|||+|.|+|||.|||+|+||+||++
T Consensus 297 ~~d~~lvYYrG~ndAwdgYgGAVvyTrs~~lP~~~~p~L~~Aa~kvG~df~~F~~tDNsCgpep~l~~~l~~~~e~~e~~ 376 (455)
T PLN02372 297 PDDYVFVYYRGRNDAWDGYGGAVVYTRSSTLPESIVPELEKAAKKVGRDFSDFVRTDNTCGPEPPLLERLEKDVEEGEKT 376 (455)
T ss_pred CCCeEEEEecccccccccccceEEEecCCCCChhhhHHHHHHHHHcCCCHHHheeeCCCCCCCchHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHH----HHHHHHHHHhccchHHHHHH--HHHHHHHHHHhHHHHHHHhcHHHHHHHHHhccchhHHHHHhccCcccc
Q 011550 408 IIKEV----EQLEGEVEKVGRTEMTLFQR--LAEGFKELQKDEEKFLRELSKEEMDLLSELKMEASEVENLFGRALPVK 480 (483)
Q Consensus 408 ~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (483)
|++|+ +|||+||++|+++|++||++ |.+||++||+|+++|+++||||||++|++|+||++||||+|||++|||
T Consensus 377 i~~e~~~~~~e~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~lskee~~~l~~~~~~~~~vek~f~~~~~~~ 455 (455)
T PLN02372 377 IVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLEKLKMEASEVEKLFGRALPVR 455 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 99995 55555678999999999999 999999999999999999999999999999999999999999999997
No 2
>PF07137 VDE: Violaxanthin de-epoxidase (VDE); InterPro: IPR010788 This family represents a conserved region approximately 350 residues long within plant violaxanthin de-epoxidase (VDE). In higher plants, violaxanthin de-epoxidase forms part of a conserved system that dissipates excess energy as heat in the light-harvesting complexes of photosystem II (PSII), thus protecting them from photo-inhibitory damage [].; GO: 0046422 violaxanthin de-epoxidase activity, 0055114 oxidation-reduction process, 0009507 chloroplast; PDB: 3CQN_B 3CQR_A.
Probab=100.00 E-value=2e-51 Score=386.58 Aligned_cols=198 Identities=81% Similarity=1.476 Sum_probs=138.2
Q ss_pred HHHHhhhcccCccccCCCCCCCCCCCcccccCCCccccCccceeeeeecCCCCCCCCCeEEEEEEcCCceEEEeEeeEeC
Q 011550 200 EFNECAVSRKKCVPQKSDLGEFPVPDPAILVKSFNIKDFNGKWYISSGLNPSFDTFDCQLHEFHTESNKLIGNLSWRIRT 279 (483)
Q Consensus 200 ~fllCal~~~~Cv~~~~d~g~~P~P~p~~tv~nFDL~rF~GrWYEIAg~n~~fd~f~Cq~a~Ytl~~dg~v~vvNsrv~t 279 (483)
+|+.|+|++++||||+.|.|++|+|+|..+|++||++.|.|+||+++|+|+.||.|+||.+.|+.++++++++++||+++
T Consensus 1 ~fn~Cavs~k~CVpq~~D~g~~pvp~~~~~v~~Fd~~~f~G~Wyit~GlNp~fD~FdCQ~h~F~~~~~kl~~~~~wRi~~ 80 (198)
T PF07137_consen 1 EFNECAVSRKKCVPQKSDVGEFPVPDPSVLVKSFDPKDFEGKWYITAGLNPTFDTFDCQLHEFHTEKDKLVGKINWRIPT 80 (198)
T ss_dssp --------------------------GGGS-S---GGGG-EEEEEEEESSTTTTTTSEEEEEEEEETTEEEEEEEEEEE-
T ss_pred CcccceeecccccccCCcCCcccCCChhHhhccCCHhHcCceEEEecCCCCCccccccccceeecCCCeEEEEEEEEeec
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeeEEEEeeCCCCCeeEEEecCCCcCcccceEEEEeccCCCCCCeEEEEEEccCCCCCCcceEEEEeCCCCCC
Q 011550 280 PDGGFFTRSAMQRFFQDPIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSKTVP 359 (483)
Q Consensus 280 pdG~~~~~~G~arfv~dp~~PGkL~vsfne~~~f~~dy~VLdTDY~~~~ddYAIVYyCg~~~a~~~yegAWLLSRdptLp 359 (483)
|||++++++.+++|++|+..||.|++++|++++|++|||||+.+.++++++|.+|||.|.+++|++|+||+||||++++|
T Consensus 81 pdggf~~r~~~q~fvqD~~~Pg~lyn~dneyL~yqddWyIl~~~~~~~~~~~vfVyYrG~ndawdgYgGAvVYtrs~~lP 160 (198)
T PF07137_consen 81 PDGGFFTRSAVQRFVQDPSQPGILYNHDNEYLHYQDDWYILGSKIEDKPDDFVFVYYRGRNDAWDGYGGAVVYTRSPTLP 160 (198)
T ss_dssp TTS-EEEEEEEEEEEE-SS-TTEEEE---GGG-EEEEEEEEEEE-SSSTT-EEEEEEEEEEETTEEEEEEEEEESSSS--
T ss_pred CCCCceeccceeEeeeCCCCCceEEecCCeeEEeeeeEEEEeecccCCCCCEEEEEEccccccccccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999987778889999999999998899999999999999999
Q ss_pred chHHHHHHHHHHHcCCCCCCeEEcCCCCCCCCchhHHH
Q 011550 360 ETIVPELERAAKSVGRDFNKFIRTDNTCGPEPPLVERL 397 (483)
Q Consensus 360 ~eiiekv~a~Lks~GiD~skfi~TdQsC~~e~pL~~~~ 397 (483)
+++++++++++++.|+|+++|++|||+|+++|||.|||
T Consensus 161 ~s~~p~l~~aa~k~G~d~~~F~~tDNtC~~~ppl~~~~ 198 (198)
T PF07137_consen 161 ESIVPELRRAAKKAGIDFSKFIRTDNTCGPEPPLVERL 198 (198)
T ss_dssp GGGHHHHHHHHHHTT--GGGSEE--STT----------
T ss_pred hHHhHHHHHHHHHhCCCHHHeEEecCCCCCCcchhhcC
Confidence 99999999999999999999999999999999999986
No 3
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=99.95 E-value=3.1e-27 Score=213.53 Aligned_cols=141 Identities=21% Similarity=0.311 Sum_probs=112.4
Q ss_pred CccccCccceeeeeecCCCCCCC-CCeEEEEEEcCCceEEEeEeeEeCCCCcEEEEeeEEEEeeCCCCCeeEEEecCCCc
Q 011550 233 FNIKDFNGKWYISSGLNPSFDTF-DCQLHEFHTESNKLIGNLSWRIRTPDGGFFTRSAMQRFFQDPIHPGILYNHDNEYL 311 (483)
Q Consensus 233 FDL~rF~GrWYEIAg~n~~fd~f-~Cq~a~Ytl~~dg~v~vvNsrv~tpdG~~~~~~G~arfv~dp~~PGkL~vsfne~~ 311 (483)
||+++|+|+|||||++|+.|+.+ .|.+++|++.+++.+.+.|.++. ++|......|.++ +.++..||+|.++|+..+
T Consensus 1 ~Dl~rY~G~WYEiar~p~~~q~~~~~~~a~Yt~~~dg~i~V~n~~~~-~~g~~~~~~g~a~-~~~~~~~~~l~V~f~~~~ 78 (143)
T PF08212_consen 1 VDLDRYMGTWYEIARYPNFFQRGCVCVTAEYTLRDDGTISVRNSCRR-PDGKIKTIRGTAT-VVDPSGPAKLKVRFPGIP 78 (143)
T ss_dssp --CCCC-EEEEEEEEE--CCCTT-ECEEEEEEE-TTS-EEEEEEEEE-TTTCCCEEEEEEE-ESSBTTSSEEEEESST--
T ss_pred CChHHcCEeeeEEEEECCcccceeeeeeeeEEEcCCCEEEEEEEEEc-CCCCEEEEEeEEE-EcCCCCccEEEEEEeccc
Confidence 79999999999999999999987 89999999998889999999877 8999999999998 556567999999997621
Q ss_pred -CcccceEEEEeccCCCCCCeEEEEEEccCCCCCCcceEEEEeCCCCCCchHHHHHHHHHHHcCCCCCCeEEcCC
Q 011550 312 -HYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKFIRTDN 385 (483)
Q Consensus 312 -~f~~dy~VLdTDY~~~~ddYAIVYyCg~~~a~~~yegAWLLSRdptLp~eiiekv~a~Lks~GiD~skfi~TdQ 385 (483)
++.++||||+||| +|+++++|.+.. ..+|||||+|+++++.++++.++++++|||.++|++|+|
T Consensus 79 ~~~~~~YwVl~~D~-----dY~~~iv~~~~~-----~~~WILsR~p~~~~~~~~~~~~~~~~~G~d~~~l~~~~Q 143 (143)
T PF08212_consen 79 FPPKGNYWVLYTDY-----DYSWAIVGSPDR-----EYLWILSRTPQLSEETYAEILDRAKQQGYDVSKLIWTPQ 143 (143)
T ss_dssp -TEEEEEEEEEEBT-----TSSEEEEEECCC-----CEEEEEESSSS--HHHHHHHHHHHHHTT--GGGEEE---
T ss_pred cCCCcceEEEEEcC-----CccEEEEecCCC-----CEEEEEeCCCCCCHHHHHHHHHHHHHcCCCHHHeEECCC
Confidence 3589999999998 488888886653 679999999999999999999999999999999999987
No 4
>KOG4824 consensus Apolipoprotein D/Lipocalin [Cell wall/membrane/envelope biogenesis]
Probab=99.93 E-value=6.3e-26 Score=214.85 Aligned_cols=172 Identities=19% Similarity=0.287 Sum_probs=145.3
Q ss_pred cCccccCCCCCCCCCCCcccccCCCccccCccceeeeeecCCCCCCC-CCeEEEEEE-cCCceEEEeEeeEeCCCCcEEE
Q 011550 209 KKCVPQKSDLGEFPVPDPAILVKSFNIKDFNGKWYISSGLNPSFDTF-DCQLHEFHT-ESNKLIGNLSWRIRTPDGGFFT 286 (483)
Q Consensus 209 ~~Cv~~~~d~g~~P~P~p~~tv~nFDL~rF~GrWYEIAg~n~~fd~f-~Cq~a~Ytl-~~dg~v~vvNsrv~tpdG~~~~ 286 (483)
..-..|....++||.+ ++++|||+.||+|+|||||+++..|+.. -|.+..|+. ++++.+.|.|.++.++||....
T Consensus 21 ~~a~gqa~~lg~cpny---pv~knFnv~RylGrWYEVas~p~~fe~~~gctt~~y~~~nkngkI~Vln~~v~r~dG~~n~ 97 (224)
T KOG4824|consen 21 LSAAGQAIALGECPNY---PVAKNFNVERYLGRWYEVASFPRGFEGKGGCTTGAYTFDNKNGKIHVLNECVHRPDGKINF 97 (224)
T ss_pred hhcccceEeeccCCCC---ccccCCChhhhcceeeeeeccccccccCCCceeeeeEecCCCceEEEeeeeeecCCCccce
Confidence 3345777888999864 4889999999999999999999999976 699999986 5688999999999899999999
Q ss_pred EeeEEEEeeCCCCCe--eEEEec--C----CCcCcccceEEEEeccCCCCCCeEEEEEEccCCCCCCcceEEEEeCCCCC
Q 011550 287 RSAMQRFFQDPIHPG--ILYNHD--N----EYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSKTV 358 (483)
Q Consensus 287 ~~G~arfv~dp~~PG--kL~vsf--n----e~~~f~~dy~VLdTDY~~~~ddYAIVYyCg~~~a~~~yegAWLLSRdptL 358 (483)
++|.++-+. ..+. .+.+.+ + .+++|...|+|+.||| ++||+.|+|+......|.+++|||||+|.+
T Consensus 98 ieG~atpvn--~~s~k~e~kf~~~~p~~~~~~l~~~~iy~Vl~tdy----enya~~ysc~alisl~h~df~wIlsRtpn~ 171 (224)
T KOG4824|consen 98 IEGKATPVN--EDSDKAELKFEFQEPIFEKCFLRFPPIYFVLGTDY----ENYADDYSCHALISLKHKDFLWILSRTPNM 171 (224)
T ss_pred eeeeeeecC--CchhhhcceeEEecCchHhhccCCCCCcceecccH----hheeccccccceeccCCCceEEEEecCCCC
Confidence 999987432 2333 233333 2 1455678999999999 999999999997667899999999999999
Q ss_pred CchHHHHHHHHHHHcCCCCCCeEEcCC-CCCC
Q 011550 359 PETIVPELERAAKSVGRDFNKFIRTDN-TCGP 389 (483)
Q Consensus 359 p~eiiekv~a~Lks~GiD~skfi~TdQ-sC~~ 389 (483)
+++++.++.+.|.+.|||+++|..|+| .|++
T Consensus 172 epEt~~klkn~l~~~gyDpeKl~~Tpq~dcp~ 203 (224)
T KOG4824|consen 172 EPETIAKLKNKLAEEGYDPEKLHDTPQSDCPP 203 (224)
T ss_pred ChHHHHHHHHHHHHcCCCHHHhccCCccCCCh
Confidence 999999999999999999999999999 5654
No 5
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=1.4e-24 Score=201.71 Aligned_cols=146 Identities=16% Similarity=0.246 Sum_probs=126.5
Q ss_pred cccCCCccccCccceeeeeecCCCCCCC-CCeEEEEEEcCCceEEEeEeeEeCCCCcEEEEeeEEEEeeCCCCCeeEEEe
Q 011550 228 ILVKSFNIKDFNGKWYISSGLNPSFDTF-DCQLHEFHTESNKLIGNLSWRIRTPDGGFFTRSAMQRFFQDPIHPGILYNH 306 (483)
Q Consensus 228 ~tv~nFDL~rF~GrWYEIAg~n~~fd~f-~Cq~a~Ytl~~dg~v~vvNsrv~tpdG~~~~~~G~arfv~dp~~PGkL~vs 306 (483)
+++.+||+++|+|+|||||++|+.|+.+ .-++++|.+.+++.+.|.|.+.....+....++|.++++ ++.+.++|.|+
T Consensus 26 ~~~~~~dl~~Y~G~WyEvaR~p~~f~~gc~~vtA~Y~l~d~~~I~V~n~c~~~~~~~~~~ieGkA~i~-~~~~~a~LkVs 104 (174)
T COG3040 26 KPVNNFDLQRYLGKWYEVARLPMRFEKGCVQVTATYSLRDDGGISVINRCRTGDGGKWSQIEGKAKIV-DNATRAKLKVS 104 (174)
T ss_pred CcccccchhhcceeeeeeecccchhhhcceeeEeEEEEecCCceEEEeccccCCCCCceeecceEEEe-cCccccEEEEE
Confidence 4667899999999999999999999999 446899999999999999988643333678888999954 55668999999
Q ss_pred cCCCcCcccceEEEEeccCCCCCCeEEEEEEccCCCCCCcceEEEEeCCCCCCchHHHHHHHHHHHcCCCCCCeEEcCCC
Q 011550 307 DNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKFIRTDNT 386 (483)
Q Consensus 307 fne~~~f~~dy~VLdTDY~~~~ddYAIVYyCg~~~a~~~yegAWLLSRdptLp~eiiekv~a~Lks~GiD~skfi~TdQs 386 (483)
|.+ +|.++|||++.| ++|++..++++.. +.+|||||+|+++++.++++.+.+++.|||.++|+++.|.
T Consensus 105 F~~--pF~g~Y~Vl~~d-----~eYs~aiVgsPdr-----~ylWlLsRtP~~s~~~~~~ml~~ak~~Gfdv~~li~~~~~ 172 (174)
T COG3040 105 FFG--PFYGDYWVLALD-----PEYSWAIVGSPDR-----EYLWLLSRTPTLSQETLKRMLEIAKRRGFDVSKLIFVQQP 172 (174)
T ss_pred ecC--CccccEEEEEEC-----CCccEEEEeCCCc-----ceEEEEecCCCCCHHHHHHHHHHHHHcCCCcceeEecCCC
Confidence 965 577999999986 6788888887764 7899999999999999999999999999999999999874
No 6
>PRK10477 outer membrane lipoprotein Blc; Provisional
Probab=99.92 E-value=1.9e-24 Score=202.47 Aligned_cols=147 Identities=13% Similarity=0.209 Sum_probs=123.9
Q ss_pred ccccCCCccccCccceeeeeecCCCCCCC-CCeEEEEEEcCCceEEEeEeeEeCCCCcEEEEeeEEEEeeCCCCCeeEEE
Q 011550 227 AILVKSFNIKDFNGKWYISSGLNPSFDTF-DCQLHEFHTESNKLIGNLSWRIRTPDGGFFTRSAMQRFFQDPIHPGILYN 305 (483)
Q Consensus 227 ~~tv~nFDL~rF~GrWYEIAg~n~~fd~f-~Cq~a~Ytl~~dg~v~vvNsrv~tpdG~~~~~~G~arfv~dp~~PGkL~v 305 (483)
.+++++||+++|+|+|||||++++.|+.+ .|.+++|++.+++.+.+.|.+....+|....+.|.+++ ..+..++++.+
T Consensus 28 ~~~~~~fDl~ry~G~WYeIar~~~~fe~~~~~~~a~Y~~~~~g~i~V~n~~~~~~~g~~~~~~g~a~~-~~~~~~~~~~v 106 (177)
T PRK10477 28 VTVVNNFDAKRYLGTWYEIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQESEGKAYF-TGAPTRAALKV 106 (177)
T ss_pred CcccCccCHHHhccHHHHhhcCCchhhcCceeEEEEEEECCCCcEEEEEeeEcCCCCCEEEEEEEEEe-cCCCCCeEEEE
Confidence 45889999999999999999999999988 89999999999888888888765555888999999974 44567899999
Q ss_pred ecCCCcCcccceEEEEeccCCCCCCeEEEEEEccCCCCCCcceEEEEeCCCCCCchHHHHHHHHHHHcCCCCCCeEEcCC
Q 011550 306 HDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKFIRTDN 385 (483)
Q Consensus 306 sfne~~~f~~dy~VLdTDY~~~~ddYAIVYyCg~~~a~~~yegAWLLSRdptLp~eiiekv~a~Lks~GiD~skfi~TdQ 385 (483)
+|.+ ++.++|||+.+|+ +.+||+| |+. +.+++|||||+|++++++++++.++++++|||.++|++|+|
T Consensus 107 ~f~~--~~~~~Y~v~~~d~---dY~~aiv--~~~-----~~~~~wIlsR~p~l~~~~~~~~~~~~~~~G~d~~~l~~~~q 174 (177)
T PRK10477 107 SFFG--PFYGGYNVIALDR---EYRHALV--CGP-----DRDYLWILSRTPTISDEVKQQMLAVATREGFDVSKLIWVKQ 174 (177)
T ss_pred EecC--CcccceEEEEEcC---CCCEEEE--EcC-----CCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCHHHeEECCC
Confidence 9853 3467888987763 2257777 433 35789999999999999999999999999999999999998
Q ss_pred C
Q 011550 386 T 386 (483)
Q Consensus 386 s 386 (483)
.
T Consensus 175 ~ 175 (177)
T PRK10477 175 P 175 (177)
T ss_pred C
Confidence 3
No 7
>PF00061 Lipocalin: Lipocalin / cytosolic fatty-acid binding protein family fatty acid-binding protein signature lipocalin signature; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 1I05_A 1MUP_A 2LB6_A 1I04_A 1I06_A 1DC9_A 1URE_A 1AEL_A 1T8V_A 1ICM_A ....
Probab=99.56 E-value=4e-15 Score=130.20 Aligned_cols=136 Identities=20% Similarity=0.259 Sum_probs=104.0
Q ss_pred ccceeeeeecCC-----CCCC-CCCeEEEEEEcCCceEEEeEeeEeCCCCcEEEEeeEEEEeeCCCCCeeEEEecCCCcC
Q 011550 239 NGKWYISSGLNP-----SFDT-FDCQLHEFHTESNKLIGNLSWRIRTPDGGFFTRSAMQRFFQDPIHPGILYNHDNEYLH 312 (483)
Q Consensus 239 ~GrWYEIAg~n~-----~fd~-f~Cq~a~Ytl~~dg~v~vvNsrv~tpdG~~~~~~G~arfv~dp~~PGkL~vsfne~~~ 312 (483)
+|+||+++..+. .+.. ..|....|++..++.+.+..... .+|.+.....++. +...||+|.+.|.+ ..
T Consensus 1 ~G~Wy~v~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~c~~~~~~~~---~~~~~g~~~~~~~~-~~ 74 (144)
T PF00061_consen 1 AGKWYEVALASDCPEFEEEKKELKCFPVVIKPLANGNLPVTFTSK--RGGQCVTITVTFK---KTEEPGKFTVEFSE-YP 74 (144)
T ss_dssp SEEEEEEEEEESSGGHHHHHHHTTEEEEEEEEHHTTEEEEEEEEE--ETTEEEEEEEEEE---EEEETTEEEEEEEE-ST
T ss_pred CceeEEEEEEeCCcchhhhccccccEEEEEEeecCCCeEEEEEEe--cCCEEEEEEEeEE---ecccCCccceeeec-cc
Confidence 599999999852 2222 38999999975555554444443 2344555444433 33579999998654 22
Q ss_pred cccceEEEEeccCCCCCCeEEEEEEccCCCCCCcceEEEEeCCCCCCchHHHHHHHHHHHcCCCCCCeEEcCC
Q 011550 313 YKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKFIRTDN 385 (483)
Q Consensus 313 f~~dy~VLdTDY~~~~ddYAIVYyCg~~~a~~~yegAWLLSRdptLp~eiiekv~a~Lks~GiD~skfi~TdQ 385 (483)
...+++|++||| ++|+++|.|+... +.+...+|||+|++++++++++++.+++++.|++.++++.++|
T Consensus 75 ~~~~~~v~~tdy----~~yai~~~~~~~~-g~~~~~~~l~~R~~~l~~~~~~~f~~~~~~~gi~~~~i~~~~~ 142 (144)
T PF00061_consen 75 GGNDFWVLDTDY----DNYAIVYSCKKDN-GKHTIVAWLLSRTPELSPEALEKFKKFAKSLGIDEENIVRTFQ 142 (144)
T ss_dssp TEEEEEEEEEES----STEEEEEEEEEET-TEEEEEEEEEESSSEEEHHHHHHHHHHHHHTTETGGCEEEEEE
T ss_pred cccceeeeccCC----CCEEEEEEEccCC-CceEEEEEEEcCCCcCCHHHHHHHHHHHHhCCCCHHeEEECCC
Confidence 345899999999 9999999999865 4488999999999999999999999999999999999998876
No 8
>PF03973 Triabin: Triabin; InterPro: IPR005657 This family contains saliva proteins from haematophagous insects that counteract vertebrate host haemostasis events such as coagulation, vasoconstriction and platelet aggregation []. These include: Triabin, a serine-protease inhibitor. It forms a non-covalent complex with thrombin at a molecular ratio of 1:1, and inhibits thrombin-induced platelet aggregation. Pallidipin, an anticollagen induced platelet aggregation factor also found in Triatoma pallidipennis salivary homogenates. Procalin, the major allergen of Triatoma protracta saliva. All members of this family belong to MEROPS proteinase inhibitor family I59, clan IZ. ; GO: 0005488 binding, 0030682 evasion or tolerance of host defense response; PDB: 3EBK_B 1AVG_I.
Probab=99.23 E-value=4e-11 Score=110.68 Aligned_cols=121 Identities=14% Similarity=0.243 Sum_probs=70.5
Q ss_pred ccccCCCcccc-CccceeeeeecCCCCCCCCCeEEEEEEcCCceEEEeEeeEeCCCCcEEEEeeEEEEeeCCCCCeeEEE
Q 011550 227 AILVKSFNIKD-FNGKWYISSGLNPSFDTFDCQLHEFHTESNKLIGNLSWRIRTPDGGFFTRSAMQRFFQDPIHPGILYN 305 (483)
Q Consensus 227 ~~tv~nFDL~r-F~GrWYEIAg~n~~fd~f~Cq~a~Ytl~~dg~v~vvNsrv~tpdG~~~~~~G~arfv~dp~~PGkL~v 305 (483)
..+|+|||.++ |.|+||+++..+.. ....|+....+..++....+....+....+......+... ....|+|.+
T Consensus 15 ~~~m~nFd~~kFF~g~WyvTH~k~~t-~~tvCr~y~t~~~~G~~~~v~~y~~~g~~~~~v~C~~~~~----~~~~g~~~f 89 (148)
T PF03973_consen 15 YKAMSNFDPTKFFKGTWYVTHAKNGT-SSTVCRKYKTSQKDGKTKIVGEYTFNGKKGYEVKCSCTKK----SGKKGQFSF 89 (148)
T ss_dssp --S-TT--HHHHCSCEEEEECCSSSG-GCCEEEEEEECTTT--EEEEEEEC-T-TS-TTEEEEEEEE----CTTCT-EEE
T ss_pred CCcccCCChHHccCccEEEEeccCCC-CCceeeEEEEEEcCCcEEEEEeeecccCcccEEEEEeccC----cCCCccEEE
Confidence 35789999999 68999999887654 2348988877766333222211222112222333344322 345677776
Q ss_pred --ecCCCcCcccceEEEEeccCCCCCCeEEEEEEccCCCCCCcceEEEEeCCCC
Q 011550 306 --HDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSKT 357 (483)
Q Consensus 306 --sfne~~~f~~dy~VLdTDY~~~~ddYAIVYyCg~~~a~~~yegAWLLSRdpt 357 (483)
.......|+.++.||+||| ++|||+|.|.... ....+..+||.|++.
T Consensus 90 ~C~~~~~~~f~~~~sVi~TDY----~nYAl~YrC~~~~-~~~~DN~lVL~R~~~ 138 (148)
T PF03973_consen 90 DCKSKNGTNFQVDFSVIDTDY----NNYALVYRCVTFE-SGKEDNYLVLQRNKN 138 (148)
T ss_dssp EEECTT-GGCEEEEEEEEE-T----TSEEEEEEEEEES-S---EEEEEEESS--
T ss_pred EEEcCCCcEEEEEEEEEEcCC----CCEEEEEEccCCC-CcccccEEEEEcCCC
Confidence 3333255788999999999 9999999998873 445678899999985
No 9
>PF02087 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitrophorins are haemoproteins found in saliva of blood-feeding insects [, ]. Saliva of the blood-sucking bug Rhodnius prolixus (Triatomid bug) contains four homologous nitrophorins, designated NP1 to NP4 in order of their relative abundance in the glands []. As isolated, nitrophorins contain nitric oxide (NO) ligated to the ferric (FeIII) haem iron. Histamine, which is released by the host in response to tissue damage, is another nitrophorin ligand. Nitrophorins transport NO to the feeding site. Dilution, binding of histamine and increase in pH (from pH ~5 in salivary gland to pH ~7.4 in the host tissue) facilitate the release of NO into the tissue where it induces vasodilatation. The salivary nitrophorin from the hemipteran Cimex lectularius (Bed bug) has no sequence similarity to R. prolixus nitrophorins. It is suggested that the two classes of insect nitrophorins have arisen as a product of the convergent evolution []. 3-D structures of several nitrophorin complexes are known []. The nitrophorin structures reveal lipocalin-like eight-stranded beta-barrel, three alpha-helices and two disulphide bonds, with haem inserted into one end of the barrel. Members of the lipocalin family are known to bind a variety of small hydrophobic ligands, including biliverdin, in a similar fashion (see [] for review). The haem iron is ligated to His59. The position of His59 is restrained through water-mediated hydrogen bond to the carboxylate of Asp70. The His59-Fe bond is bent ~15 degrees out of the imidazole plane. Asp70 forms an unusual hydrogen bond with one of the haem propionates, suggesting the residue has an altered pKa. In NP1-histamine structure, the planes of His59 and histamine imidazole rings lie in an arrangement almost identical to that found in oxidised cytochrome b5. This entry represents the nitrophorin structural domain.; GO: 0051381 histamine binding, 0070026 nitric oxide binding; PDB: 1SXX_A 2OFM_X 1X8Q_A 3TGA_A 1SXU_A 1IKJ_A 1YWD_A 1X8N_A 3FLL_A 1X8O_A ....
Probab=98.86 E-value=4.1e-08 Score=92.16 Aligned_cols=153 Identities=18% Similarity=0.267 Sum_probs=79.6
Q ss_pred cccCCCcccc-CccceeeeeecCCCCCCC--CCeEEEEEEcCCceEEEeEeeEeCCCCc-EEEEeeEEEEeeCCCCCe-e
Q 011550 228 ILVKSFNIKD-FNGKWYISSGLNPSFDTF--DCQLHEFHTESNKLIGNLSWRIRTPDGG-FFTRSAMQRFFQDPIHPG-I 302 (483)
Q Consensus 228 ~tv~nFDL~r-F~GrWYEIAg~n~~fd~f--~Cq~a~Ytl~~dg~v~vvNsrv~tpdG~-~~~~~G~arfv~dp~~PG-k 302 (483)
.++.+||.++ |.|+||+++-+...-+.. .|.... ....+|.+..+-..+. |+++ .+...+... . ..+| +
T Consensus 6 ~~kt~fdk~k~F~g~WYvThyld~~~q~t~~~ca~~~-~kt~~GkvKE~~~~yn-p~~~~~~Y~is~~~-l---~s~g~K 79 (178)
T PF02087_consen 6 KPKTDFDKDKYFSGTWYVTHYLDTDPQVTDKYCACFA-PKTSNGKVKEALYHYN-PKNKTYFYDISESK-L---ESNGFK 79 (178)
T ss_dssp ---TT--HHHHTSSEEEEEEEEESSCCSSSSEEEEEE-EEEETTEEEEEEEEEE-TTTTEEEEEEEEEE-E---EETTSE
T ss_pred cccCCCCHHHccCceEEEEEEecCCCCcchhhhhhhc-cccCCCceEEEEEEec-CCCceEEEEeeeee-c---cCCcce
Confidence 3779999999 799999999885444433 554332 2233444444433333 3321 111111111 0 1122 2
Q ss_pred EEEec-----CCC----cCcccce--EEEEeccCCCCCCeEEEEEEccCCCCCCcceEEEEeCCCCCCchHHHHHHHHHH
Q 011550 303 LYNHD-----NEY----LHYKDDW--YILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSKTVPETIVPELERAAK 371 (483)
Q Consensus 303 L~vsf-----ne~----~~f~~dy--~VLdTDY~~~~ddYAIVYyCg~~~a~~~yegAWLLSRdptLp~eiiekv~a~Lk 371 (483)
+.-.+ ++- ...+..| .||+|| ++||+||.|.+....+-..---|++|..... .-.++..++.
T Consensus 80 ytAk~~~VdK~g~~~~~~~~~~sYt~tv~dtD-----ds~AvV~~C~~~~~~~l~~LYaVlnRn~~~~--~~~KVksal~ 152 (178)
T PF02087_consen 80 YTAKFKTVDKDGKKIEEADEKNSYTITVLDTD-----DSYAVVHVCLHEGNKDLGDLYAVLNRNKNAN--PNDKVKSALD 152 (178)
T ss_dssp EEEEEEEE-TTS-EEE---TTEEEEEEEEEEE-----SSEEEEEEEEEETTEEEEEEEEEEESSTT------HHHHHHHH
T ss_pred eeeeeeEecCCCCcccccccCceEEEEEEecC-----CCeeEEEEecccCcccceeeeeeeecCCCCC--cchhHHHHHh
Confidence 21111 000 0011223 358998 4899999998753223235567999999976 4789999999
Q ss_pred HcCCCCCCeEEcCC-CCCCCCch
Q 011550 372 SVGRDFNKFIRTDN-TCGPEPPL 393 (483)
Q Consensus 372 s~GiD~skfi~TdQ-sC~~e~pL 393 (483)
+.|+..++|+.+.+ .|.++..|
T Consensus 153 ~vglkL~df~~~k~~~C~YDd~~ 175 (178)
T PF02087_consen 153 KVGLKLDDFTSTKDNKCKYDDSL 175 (178)
T ss_dssp HTT--GGGSEESTTST----HHH
T ss_pred hcceeehheeecccCCccccchh
Confidence 99999999998876 89887544
No 10
>PF11032 ApoM: Apolipoprotein M (ApoM); InterPro: IPR022734 ApoM is a 25 kDa plasma protein associated with high-density lipoproteins (HDLs). ApoM is important in the formation of pre-ss-HDL and also in increasing cholesterol efflux from macrophage foam cells []. Lipoproteins consist of lipids solubilized by apolipoproteins. ApoM lacks an external amphipathic motif and is uniquely secreted to plasma without cleavage of its terminal signal peptide []. ; PDB: 2XKL_A 2WEX_A 2YG2_B 2WEW_A.
Probab=97.60 E-value=0.001 Score=64.21 Aligned_cols=148 Identities=24% Similarity=0.382 Sum_probs=74.1
Q ss_pred CCCCCCCCcccccCCCccccC----ccceeeeeecCCCC---CCC---CCeEEEEEEcCCceEEEeEeeEeCCCCcEEEE
Q 011550 218 LGEFPVPDPAILVKSFNIKDF----NGKWYISSGLNPSF---DTF---DCQLHEFHTESNKLIGNLSWRIRTPDGGFFTR 287 (483)
Q Consensus 218 ~g~~P~P~p~~tv~nFDL~rF----~GrWYEIAg~n~~f---d~f---~Cq~a~Ytl~~dg~v~vvNsrv~tpdG~~~~~ 287 (483)
++.||.+.|. +...+|.+.| .|+||=|||.-+.- +.| +....+++.+++...-++.+.++..+|.+...
T Consensus 20 ~~~C~~~~~l-~~~~~d~~q~p~~~LGkW~fiAgas~~~~~L~~f~~vDs~~f~~~~~s~~~~l~l~~~iR~~~g~C~~~ 98 (186)
T PF11032_consen 20 IYQCPEPAPL-VTSGLDNTQFPSPLLGKWYFIAGASPHPESLATFKPVDSAWFNLSAGSDEETLNLTATIRMKNGKCVPR 98 (186)
T ss_dssp ----S---EE-EEECCTCCCCCHCCSCEEEEEEEEESSGGGCGGGTTEEEEEEEEEE-SSTTEEEEEEEEEETTS-EEEE
T ss_pred ccCCCCcccc-ccccCCcccCCcccceeEEEEEEeCCCchHHhhhcceeeEEEEEEeCCCCCeEEeeeeecccCCeEEEe
Confidence 4457765544 5567886665 99999999974321 223 44444555554443345556666667888876
Q ss_pred eeEEEEeeCCCCCeeEEEecCCCcCcccceEEEEeccCCCCCCeEEEEEEccCCCCCCcceEEEEeCCCCCCchHHHHHH
Q 011550 288 SAMQRFFQDPIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSKTVPETIVPELE 367 (483)
Q Consensus 288 ~G~arfv~dp~~PGkL~vsfne~~~f~~dy~VLdTDY~~~~ddYAIVYyCg~~~a~~~yegAWLLSRdptLp~eiiekv~ 367 (483)
.-++. +... .-.|.+. +.+ ...-..+.+ +.+ |=.|+-.- +..+....+|||+|.++++.+++++
T Consensus 99 ~~~y~-l~~~--s~~l~~e--g~~--~~~~~l~~t---sCp-DCiil~e~-----~~~~~rllLysR~~~~~~~~lEeFk 162 (186)
T PF11032_consen 99 SWTYH-LSEG--STTLRTE--GRP--DMRTELFST---SCP-DCIILKET-----GDSYQRLLLYSRSPKLEEEELEEFK 162 (186)
T ss_dssp EEEEE-E-TT--SS-EEET--TEE--EEEEECCCC---CST-TEEEEEEE-----ETTEEEEEEEESSSS--HHHHHHHH
T ss_pred eEEEE-EecC--CceEEec--CCC--cceeeEEec---CCC-CEEEEEEc-----CCCceEEEEEeCCCCCCHHHHHHHH
Confidence 65554 2211 1112211 100 000001112 233 22222111 3456668899999999999999999
Q ss_pred HHHHHcCCCCCCeEEcCC
Q 011550 368 RAAKSVGRDFNKFIRTDN 385 (483)
Q Consensus 368 a~Lks~GiD~skfi~TdQ 385 (483)
+-++=.|+. |..+++
T Consensus 163 ~q~~Cl~~~---~l~~p~ 177 (186)
T PF11032_consen 163 AQTECLGFK---FLLTPR 177 (186)
T ss_dssp HHHHHTT-----EEE---
T ss_pred HhhhccCcE---EEECcc
Confidence 999988888 777765
No 11
>PLN02372 violaxanthin de-epoxidase
Probab=79.61 E-value=6.5 Score=42.59 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=10.9
Q ss_pred hhhhHhhhheeecCCcchhcccc
Q 011550 122 NVAGVLACMFLVIPSAGAVDALK 144 (483)
Q Consensus 122 ~~~~~~~~~~~~~~~~~a~d~~~ 144 (483)
.++.+++++...+.+++++|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~a~~~~ 109 (455)
T PLN02372 87 LLLKALGLLACALLSVPSADAAD 109 (455)
T ss_pred HHHHHHHHHHHhhccCCchhhhh
Confidence 34444444444444555555554
No 12
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=55.43 E-value=26 Score=39.47 Aligned_cols=101 Identities=25% Similarity=0.226 Sum_probs=65.4
Q ss_pred HHHHHHHHHHcCCCCCCeEEcCC--------CCCCCCchhHHHHHHHhhhhhhhhHHHHHH---HHHHHHhccchHHHHH
Q 011550 363 VPELERAAKSVGRDFNKFIRTDN--------TCGPEPPLVERLEKKVEEGERTIIKEVEQL---EGEVEKVGRTEMTLFQ 431 (483)
Q Consensus 363 iekv~a~Lks~GiD~skfi~TdQ--------sC~~e~pL~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 431 (483)
..+++++++..-+||..+-.+.. .-.+.+++.+.++.- ..+..|+..| +..++.+.+.+..+.+
T Consensus 282 ~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~-----~~~~~el~~L~~~~~~~~~Le~~~~~l~~ 356 (557)
T COG0497 282 SEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYL-----DKIKEELAQLDNSEESLEALEKEVKKLKA 356 (557)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH-----HHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 34445555566666666554432 344555444322211 1222333333 2335666777788888
Q ss_pred HHHHHHHHHHHhHHHHHHHhcHHHHHHHHHhccchhH
Q 011550 432 RLAEGFKELQKDEEKFLRELSKEEMDLLSELKMEASE 468 (483)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (483)
.+.+.-..|-+.-....+.|.++=++-|.+|+||-..
T Consensus 357 ~~~~~A~~Ls~~R~~~A~~L~~~v~~eL~~L~Me~a~ 393 (557)
T COG0497 357 ELLEAAEALSAIRKKAAKELEKEVTAELKALAMEKAR 393 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCce
Confidence 9999999999999999999999999999999998653
No 13
>PRK10869 recombination and repair protein; Provisional
Probab=53.20 E-value=24 Score=39.45 Aligned_cols=55 Identities=18% Similarity=0.308 Sum_probs=41.4
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHhcHHHHHHHHHhccchh
Q 011550 413 EQLEGEVEKVGRTEMTLFQRLAEGFKELQKDEEKFLRELSKEEMDLLSELKMEAS 467 (483)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (483)
+..+..++++.+....+.+++.+--++|.+--......|.++=.+.|.+|+|+-.
T Consensus 337 ~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L~m~~a 391 (553)
T PRK10869 337 DDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHELSMPHG 391 (553)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 3333445556666667777777777788877788889999999999999999755
No 14
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=49.16 E-value=47 Score=38.83 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=24.1
Q ss_pred cceEEEEeCCCCCCchHHHHHHHHHHHcCCCCCCe
Q 011550 346 YGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKF 380 (483)
Q Consensus 346 yegAWLLSRdptLp~eiiekv~a~Lks~GiD~skf 380 (483)
.++|.-.+|---+|++++++++.++...+.+.+++
T Consensus 487 ~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~l 521 (782)
T PRK00409 487 KSNAFEIAKRLGLPENIIEEAKKLIGEDKEKLNEL 521 (782)
T ss_pred CcHHHHHHHHhCcCHHHHHHHHHHHhhhhhHHHHH
Confidence 34556667777788888888888877655555444
No 15
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=48.70 E-value=47 Score=38.80 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=19.3
Q ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHcCCCCC
Q 011550 347 GGAFLYTRSKTVPETIVPELERAAKSVGRDFN 378 (483)
Q Consensus 347 egAWLLSRdptLp~eiiekv~a~Lks~GiD~s 378 (483)
++|.-.++---+|++++++++.++...+.+.+
T Consensus 483 S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~ 514 (771)
T TIGR01069 483 SYAFEIAQRYGIPHFIIEQAKTFYGEFKEEIN 514 (771)
T ss_pred cHHHHHHHHhCcCHHHHHHHHHHHHhhHHHHH
Confidence 34555566666777777777777665444433
No 16
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=48.10 E-value=46 Score=35.23 Aligned_cols=32 Identities=34% Similarity=0.523 Sum_probs=18.4
Q ss_pred HHHHHHhHHHHHHHhcHHHHHHHHHhccchhH
Q 011550 437 FKELQKDEEKFLRELSKEEMDLLSELKMEASE 468 (483)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (483)
++++.+.-...-++++.|+.+.+++|+-+-.+
T Consensus 48 Lk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~ 79 (330)
T PF07851_consen 48 LKELKKSLKRCKKSLSAEERELIEKLEEDIKE 79 (330)
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Confidence 34444444444445677788877777654333
No 17
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=42.87 E-value=84 Score=32.78 Aligned_cols=55 Identities=31% Similarity=0.637 Sum_probs=32.4
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHhcHHHHHHH
Q 011550 401 VEEGERTIIKEVEQLEGEVEKVGRTEMTLFQRLAEGFKELQKDEEKFLRELSKEEMDLL 459 (483)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (483)
+++-++....|++++|.|-+++.+. +..|.+-.+++++.|+.|.+..+.=+++++
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~e----l~~le~e~~~l~~eE~~~~~~~n~~~~~l~ 109 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQE----LEELEEELEELDEEEEEYWREYNELQLELI 109 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555666665555444332 233445566777788888887777666554
No 18
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=40.28 E-value=68 Score=34.74 Aligned_cols=34 Identities=15% Similarity=0.445 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcHHHHHHHHH
Q 011550 428 TLFQRLAEGFKELQKDEEKFLRELSKEEMDLLSE 461 (483)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (483)
...++|.+|+.-|++....|++.+=.--+++||-
T Consensus 355 ~~~~~L~~GLdpLerqVre~Fh~IV~sR~elLd~ 388 (389)
T PF05633_consen 355 RVCEALSQGLDPLERQVREVFHRIVRSRTELLDS 388 (389)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHhhHHHHhc
Confidence 3456666666666666666666665555555554
No 19
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=40.17 E-value=13 Score=30.17 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=25.0
Q ss_pred hhhhhhccCCCCCCcchhhhhh--hhcCchhhhHHHH
Q 011550 169 NVACLQTCNNRPDETECQIKCG--DLFENSVVDEFNE 203 (483)
Q Consensus 169 ~l~Cl~~C~~~p~e~~C~~rC~--~~ye~~~l~~fll 203 (483)
++.|-..-. |||++|+-+|+ -+||-+-...|..
T Consensus 11 C~VCg~aIp--~de~~CSe~C~eil~ker~R~r~~~~ 45 (64)
T COG4068 11 CVVCGKAIP--PDEQVCSEECGEILNKERKRQRNFMI 45 (64)
T ss_pred ccccCCcCC--CccchHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666 89999999999 7888766666543
No 20
>PF11403 Yeast_MT: Yeast metallothionein; InterPro: IPR022710 Metallothioneins are characterised by an abundance of cysteine residues and a lack of generic secondary structure motifs. This protein functions in primary metal storage, transport and detoxification []. For the first 40 residues in the protein the polypeptide wraps around the metal by forming two large parallel loops separated by a deep cleft containing the metal cluster []. ; PDB: 1AQS_A 1AQR_A 1RJU_V 1FMY_A 1AOO_A 1AQQ_A.
Probab=39.18 E-value=9.4 Score=27.72 Aligned_cols=27 Identities=30% Similarity=0.822 Sum_probs=17.7
Q ss_pred cChHHHhhhcCCcchhhhhhhhhccCC
Q 011550 152 ECRLELAECISNPACAANVACLQTCNN 178 (483)
Q Consensus 152 ~C~~~~~~C~~dp~C~~~l~Cl~~C~~ 178 (483)
+|+-|--.|-.|..|.+.-+|-.+|+.
T Consensus 6 ecqcqcgscknneqcqkscscptgcns 32 (40)
T PF11403_consen 6 ECQCQCGSCKNNEQCQKSCSCPTGCNS 32 (40)
T ss_dssp ----SSSTTTT-TTSTTS-SS-TTTTS
T ss_pred eeeeecCCccChHHHhhcCCCCCCCCC
Confidence 466666789999999999999999993
No 21
>KOG3688 consensus Cyclic GMP phosphodiesterase [Signal transduction mechanisms]
Probab=38.42 E-value=25 Score=38.65 Aligned_cols=34 Identities=38% Similarity=0.501 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhHHHHHHHhcHHHHHHHHHhccc
Q 011550 432 RLAEGFKELQKDEEKFLRELSKEEMDLLSELKME 465 (483)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (483)
.+.+.|+-+|+||.|||-.|||+|+.-|..|=+|
T Consensus 292 H~sas~rLl~edE~nil~nLs~de~relR~LViE 325 (554)
T KOG3688|consen 292 HASASFRLLQEDEMNILINLSKDEWRELRNLVIE 325 (554)
T ss_pred hHHHHHHHhcchhhhHHhcCCHHHHHHHHHHHHH
Confidence 4678899999999999999999999999888766
No 22
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=35.98 E-value=73 Score=30.24 Aligned_cols=67 Identities=19% Similarity=0.310 Sum_probs=32.9
Q ss_pred CCchhHHHHHHHhhhhhhhhHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHhHHHHHHHhcHHHHHHHHHhcc
Q 011550 390 EPPLVERLEKKVEEGERTIIKEVEQLEGEVEKVGRTE-MTLFQRLAEGFKELQKDEEKFLRELSKEEMDLLSELKM 464 (483)
Q Consensus 390 e~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (483)
..||+|.+++.-.+-+..+-.=.+++-+.+ .+.| .+..+-..+.+++..++ -.|++||+++|.+|+.
T Consensus 48 ~tpL~ea~~~i~~~~~~~~~~~f~~~a~~L---~~~~g~s~~~~w~~~~~~~~~~-----~~L~~~d~eiL~~lG~ 115 (170)
T TIGR02833 48 HTPLPEAFKKIALKSPKPVNLLFESASERL---KEGEGLTVYEAWKKALNEVWKQ-----TALQKSEKEILLQFGK 115 (170)
T ss_pred CCcHHHHHHHHHhhcchhHHHHHHHHHHHH---HhCCCCCHHHHHHHHHHHhhhc-----cCCCHHHHHHHHHHHH
Confidence 457887777776655544333233333333 2222 44444444444333222 2566666666666543
No 23
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=35.61 E-value=68 Score=35.78 Aligned_cols=72 Identities=21% Similarity=0.224 Sum_probs=43.8
Q ss_pred HHHHhhhhhhhhHHHHHHHHHH----------HHhccchHHHHHHHHHHHHHHHHhHHHHHHHhcHHHHHHHHHhccchh
Q 011550 398 EKKVEEGERTIIKEVEQLEGEV----------EKVGRTEMTLFQRLAEGFKELQKDEEKFLRELSKEEMDLLSELKMEAS 467 (483)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (483)
.++....-..+++..++++.|+ +++.+....+.+++.+--.+|.+--......|.+.=.+.|..|+|+-.
T Consensus 317 krKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~L~m~~~ 396 (563)
T TIGR00634 317 KRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKALAMEKA 396 (563)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 3333333334444455555544 444445555566666666666666677777888888889999999854
Q ss_pred HH
Q 011550 468 EV 469 (483)
Q Consensus 468 ~~ 469 (483)
..
T Consensus 397 ~f 398 (563)
T TIGR00634 397 EF 398 (563)
T ss_pred EE
Confidence 43
No 24
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=33.53 E-value=58 Score=25.75 Aligned_cols=44 Identities=30% Similarity=0.468 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCCCCCeEEcCCCCCCCCchhHHHHHHHhhhhhhhhHHHHHH
Q 011550 363 VPELERAAKSVGRDFNKFIRTDNTCGPEPPLVERLEKKVEEGERTIIKEVEQL 415 (483)
Q Consensus 363 iekv~a~Lks~GiD~skfi~TdQsC~~e~pL~~~~~~~~~~~~~~~~~~~~~~ 415 (483)
.++..+++++.|||+- |...-||.+..++.= -....+++|++++
T Consensus 12 ~p~~a~vf~~~gIDfC--------CgG~~~L~eA~~~~~-ld~~~vl~~L~~l 55 (56)
T PF04405_consen 12 DPRAARVFRKYGIDFC--------CGGNRSLEEACEEKG-LDPEEVLEELNAL 55 (56)
T ss_pred ChHHHHHHHHcCCccc--------CCCCchHHHHHHHcC-CCHHHHHHHHHHc
Confidence 3566778899999975 777799987665431 1233445555443
No 25
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=33.40 E-value=20 Score=27.14 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=22.0
Q ss_pred EeCCCCCCchHHHHHHHHHHHcCCCCC
Q 011550 352 YTRSKTVPETIVPELERAAKSVGRDFN 378 (483)
Q Consensus 352 LSRdptLp~eiiekv~a~Lks~GiD~s 378 (483)
|...+.+++++.+++.+++++.||-++
T Consensus 20 ln~~~~vs~~tr~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 20 LNGPPRVSEETRERILEAAEELGYRPN 46 (46)
T ss_dssp HTTCSSSTHHHHHHHHHHHHHHTB-SS
T ss_pred HhCCCCCCHHHHHHHHHHHHHHCCCCC
Confidence 444578899999999999999999764
No 26
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=32.39 E-value=96 Score=25.88 Aligned_cols=47 Identities=26% Similarity=0.493 Sum_probs=31.5
Q ss_pred HHHHHHHHHH--HHHHHHhHHHHHHHhcHHHH-----HHHHHhccchhHHHHHhc
Q 011550 427 MTLFQRLAEG--FKELQKDEEKFLRELSKEEM-----DLLSELKMEASEVENLFG 474 (483)
Q Consensus 427 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 474 (483)
+.++.||-+| +.+++++-...+.+.|..|. +|+. =||...||.+|..
T Consensus 3 K~ii~~Lh~G~~~e~vk~~F~~~~~~Vs~~EI~~~Eq~Li~-eG~~~eeiq~LCd 56 (71)
T PF04282_consen 3 KEIIKRLHEGEDPEEVKEEFKKLFSDVSASEISAAEQELIQ-EGMPVEEIQKLCD 56 (71)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCCHHHHHHHhH
Confidence 3466677555 46777777777777776654 4444 4788999988753
No 27
>PF14747 DUF4473: Domain of unknown function (DUF4473)
Probab=31.94 E-value=3.1e+02 Score=22.99 Aligned_cols=68 Identities=12% Similarity=0.164 Sum_probs=41.0
Q ss_pred HHHHHHHhhhh-hhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHhcHHHHHHHHHh
Q 011550 395 ERLEKKVEEGE-RTIIKEVEQLEGEVEKVGRTEMTLFQRLAEGFKELQKDEEKFLRELSKEEMDLLSEL 462 (483)
Q Consensus 395 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (483)
|....-+..|- ..-++.+-.|..+...-......-....-..|.++..+-++|++.+|+++..+....
T Consensus 10 e~kaEL~aAGmS~~aidgi~~i~~~~~~~~~~~~~~~e~~~~~~~~~~~e~~~fikt~s~~DQ~~y~~~ 78 (82)
T PF14747_consen 10 EAKAELVAAGMSEKAIDGIVKIAEKFKSQFAKAKGNKEAAKKFFEKYKAEVDAFIKTQSEEDQTAYNAF 78 (82)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 33333444442 344566666666542211111333344456677888999999999999999887653
No 28
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=31.70 E-value=2.6e+02 Score=28.96 Aligned_cols=102 Identities=24% Similarity=0.282 Sum_probs=49.1
Q ss_pred CCCCchHHHHHHHHH---HHcCCCCCCeEEcCCCCCCCCchhHHHHHHH-hhhhhhhhHHHHHHHHHHHHhccchHHHHH
Q 011550 356 KTVPETIVPELERAA---KSVGRDFNKFIRTDNTCGPEPPLVERLEKKV-EEGERTIIKEVEQLEGEVEKVGRTEMTLFQ 431 (483)
Q Consensus 356 ptLp~eiiekv~a~L---ks~GiD~skfi~TdQsC~~e~pL~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (483)
+.|+..-+.++.+.+ +++|++.+.|.. .|.|.+++.- ..+-.+...|-+...+.++. .+.|+.
T Consensus 144 ~~LS~~dl~e~~~~l~DLesa~vkV~WLR~---------~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~-~~~ELe--- 210 (269)
T PF05278_consen 144 KELSESDLKEMIATLKDLESAKVKVDWLRS---------KLEEILEAKEIYDQHETREEEKEEKDRKLEL-KKEELE--- 210 (269)
T ss_pred hhhhHHHHHHHHHHHHHHHHcCcchHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---
Confidence 467766666666654 578999887764 4665555422 12223333344444444422 122221
Q ss_pred HHHHHHHHHHHhHHHHHHHhcHHHHHHHHHhccchhHHHH
Q 011550 432 RLAEGFKELQKDEEKFLRELSKEEMDLLSELKMEASEVEN 471 (483)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (483)
.+.+-+++.++.-..+-..+ .|=++-|.+|+|+-+.+.|
T Consensus 211 ~~~EeL~~~Eke~~e~~~~i-~e~~~rl~~l~~~~~~l~k 249 (269)
T PF05278_consen 211 ELEEELKQKEKEVKEIKERI-TEMKGRLGELEMESTRLSK 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 11222233333322333222 2444557777777766655
No 29
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=31.33 E-value=1.3e+02 Score=33.11 Aligned_cols=58 Identities=31% Similarity=0.512 Sum_probs=36.3
Q ss_pred hHHHHHHHhhhhhhhh--------------HHHHHHHHHH-HHhccchHHHHHHHHHHHHHHHHhHHHHHHHhc
Q 011550 394 VERLEKKVEEGERTII--------------KEVEQLEGEV-EKVGRTEMTLFQRLAEGFKELQKDEEKFLRELS 452 (483)
Q Consensus 394 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (483)
+|||++.+.+.+|.-- .|.+++|+.+ .+++|.| +|-+.|.|.=+.+++|||.|+.|.+
T Consensus 262 veRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRe-alcr~lsEsesslemdeery~Ne~~ 334 (552)
T KOG2129|consen 262 VERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERRE-ALCRMLSESESSLEMDEERYLNEFV 334 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHhhhh
Confidence 3566666655554433 3344444443 2344443 4777788888899999999988765
No 30
>COG3233 Predicted deacetylase [General function prediction only]
Probab=30.78 E-value=97 Score=31.34 Aligned_cols=81 Identities=21% Similarity=0.395 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHcCCCCCCe-EEcCC-----CCCCCCchhHHHHHHHhhhhhhhhHHHHHHH----HHHHHhccchHHHH
Q 011550 361 TIVPELERAAKSVGRDFNKF-IRTDN-----TCGPEPPLVERLEKKVEEGERTIIKEVEQLE----GEVEKVGRTEMTLF 430 (483)
Q Consensus 361 eiiekv~a~Lks~GiD~skf-i~TdQ-----sC~~e~pL~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 430 (483)
..++.+.+++++.|.+...+ ...+| .=..+|...+-|++-.++|++.++.=-.+|- +|..-..++|..+
T Consensus 18 ~~~~~i~~~ide~~~~~~t~lLViPn~~~~~~l~~d~rf~~~l~~r~e~Gdel~lHGy~h~d~~~~gEF~~l~~~eA~~- 96 (233)
T COG3233 18 PTLSNIDAAIDEYGAQNSTVLLVIPNHANDYPLSKDPRFVDLLTEREEEGDELVLHGYDHIDTKRRGEFACLRAHEARL- 96 (233)
T ss_pred hhHHHHHHHHHHhCCCCceEEEEeeccCCCCCcccChHHHHHHHHHHhcCCEEEEechhhccccCccccccchHHHHHH-
Confidence 46788889999999998887 45554 2344677778999999999999998777777 6654444555543
Q ss_pred HHHHHHHHHHHHh
Q 011550 431 QRLAEGFKELQKD 443 (483)
Q Consensus 431 ~~~~~~~~~~~~~ 443 (483)
||.-|+++++.-
T Consensus 97 -RL~~a~~~l~~~ 108 (233)
T COG3233 97 -RLMAAIEELEAL 108 (233)
T ss_pred -HHHHHHHHHHHc
Confidence 888888888764
No 31
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=29.60 E-value=78 Score=32.96 Aligned_cols=69 Identities=25% Similarity=0.358 Sum_probs=36.0
Q ss_pred CCCCCCchhHHHHHHHhh---h---hhhhhHHHHHHHHHH---------HHhccchHHHHHHHHHHHHHHHHhHHHHHHH
Q 011550 386 TCGPEPPLVERLEKKVEE---G---ERTIIKEVEQLEGEV---------EKVGRTEMTLFQRLAEGFKELQKDEEKFLRE 450 (483)
Q Consensus 386 sC~~e~pL~~~~~~~~~~---~---~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (483)
+......+.|||++.+++ | ....++|+.++-.|+ ..+..+|+.+|.-|...-.....-+...++.
T Consensus 192 N~~~~~~fsErLe~iI~~Y~~~~i~~~e~~~eLi~la~el~~~~~r~~~~gLseeE~AFyd~L~~~~~~~~~~~~e~l~~ 271 (335)
T PF11867_consen 192 NPVRYKKFSERLEEIIEKYNNRSISSEEVIEELIKLAKELREEEERAEELGLSEEELAFYDALAKNESAVEEMGDEELKE 271 (335)
T ss_pred CHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHccccccccccHHHHHH
Confidence 344457888899888875 3 344455555554544 1233455566665555332222223334455
Q ss_pred hcHH
Q 011550 451 LSKE 454 (483)
Q Consensus 451 ~~~~ 454 (483)
|.+|
T Consensus 272 la~e 275 (335)
T PF11867_consen 272 LAKE 275 (335)
T ss_pred HHHH
Confidence 5444
No 32
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=28.92 E-value=1.1e+02 Score=28.95 Aligned_cols=67 Identities=21% Similarity=0.353 Sum_probs=30.2
Q ss_pred CCchhHHHHHHHhhhhhhhhHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHhHHHHHHHhcHHHHHHHHHhcc
Q 011550 390 EPPLVERLEKKVEEGERTIIKEVEQLEGEVEKVGRTE-MTLFQRLAEGFKELQKDEEKFLRELSKEEMDLLSELKM 464 (483)
Q Consensus 390 e~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (483)
..||+|.+++.-.+-+..+-.=.+.+-+.+ .+.| .+..+-..+.+++..++ -.|++||+++|.+++.
T Consensus 49 ~tpL~ea~~~i~~~~~~~~~~~f~~~a~~L---~~~~g~s~~eaw~~~~~~~~~~-----~~L~~~d~eiL~~lg~ 116 (171)
T PRK08307 49 HTPLPEALENIAKQSPKPISTLFQRFSERL---ESGEGETAYEAWEKALEENWKN-----TALKKEDIEILLQFGK 116 (171)
T ss_pred CCcHHHHHHHHHHccchhHHHHHHHHHHHH---HhCCCCCHHHHHHHHHHHhhhc-----cCCCHHHHHHHHHHHH
Confidence 456777777766554444322223333333 2222 33333333333332221 2566666666655543
No 33
>KOG1733 consensus Mitochondrial import inner membrane translocase, subunit TIM13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.49 E-value=25 Score=30.85 Aligned_cols=21 Identities=29% Similarity=0.665 Sum_probs=17.1
Q ss_pred CCCcchhhhhhhhcCchhhhHHHHh
Q 011550 180 PDETECQIKCGDLFENSVVDEFNEC 204 (483)
Q Consensus 180 p~e~~C~~rC~~~ye~~~l~~fllC 204 (483)
+.|+.|.-+|.+.| +|+|+.-
T Consensus 60 ~~e~~Cis~CmdRy----MdawniV 80 (97)
T KOG1733|consen 60 SSEKSCISRCMDRY----MDAWNIV 80 (97)
T ss_pred cchHHHHHHHHHHH----HHHHHHH
Confidence 57899999999988 6677654
No 34
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=26.17 E-value=1.3e+02 Score=28.33 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=9.0
Q ss_pred CCchhHHHHHHHhhhh
Q 011550 390 EPPLVERLEKKVEEGE 405 (483)
Q Consensus 390 e~pL~~~~~~~~~~~~ 405 (483)
..||+|.+++.-.+-+
T Consensus 48 ~tpL~eal~~i~~~~~ 63 (170)
T PF09548_consen 48 ATPLPEALERISRRSE 63 (170)
T ss_pred CCCHHHHHHHHHhccc
Confidence 4466666666555433
No 35
>PRK11032 hypothetical protein; Provisional
Probab=25.12 E-value=1.6e+02 Score=28.21 Aligned_cols=51 Identities=33% Similarity=0.511 Sum_probs=30.7
Q ss_pred hhHHHHHHHhhhhhhhhHHHHHHHH---HHHHhccchHHHHHHHHHHHHHHHHhHHHHHH
Q 011550 393 LVERLEKKVEEGERTIIKEVEQLEG---EVEKVGRTEMTLFQRLAEGFKELQKDEEKFLR 449 (483)
Q Consensus 393 L~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (483)
+-+|+.+.++.++.++-+-|+..++ +..++.++|..|+..- |+.|-+.|.+
T Consensus 11 ll~~v~~~l~~~~~~l~~~ve~a~~~~~~~~elT~dEl~lv~~y------lkRDL~ef~~ 64 (160)
T PRK11032 11 LVASLTERLRNGERDIDALVESARKRVDAAGELTRDEVDLITRA------VRRDLEEFAR 64 (160)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH------HHHHHHHHHH
Confidence 3456677777777554444444444 4567788888877643 4556666655
No 36
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=24.50 E-value=2.2e+02 Score=33.43 Aligned_cols=15 Identities=13% Similarity=-0.106 Sum_probs=11.0
Q ss_pred HHHHHHHHHcCCCCC
Q 011550 364 PELERAAKSVGRDFN 378 (483)
Q Consensus 364 ekv~a~Lks~GiD~s 378 (483)
.....+++..|++.+
T Consensus 483 S~a~~iA~~~Glp~~ 497 (771)
T TIGR01069 483 SYAFEIAQRYGIPHF 497 (771)
T ss_pred cHHHHHHHHhCcCHH
Confidence 456677788888866
No 37
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=24.42 E-value=2.6e+02 Score=26.76 Aligned_cols=74 Identities=20% Similarity=0.319 Sum_probs=45.8
Q ss_pred hhhhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHH-HHHHhcHHHHHHHHHhccchhHHHHHhccCccc
Q 011550 404 GERTIIKEVEQLEGEVEKVGRTEMTLFQRLAEGFKELQKDEEK-FLRELSKEEMDLLSELKMEASEVENLFGRALPV 479 (483)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (483)
+-.++-.|+|+|+.+++.+. ++..++.+=+--|++.-..+-. -+.+|.++=.+++..+-|--.++..|.|.. ||
T Consensus 73 ~~~~~~eelerLe~~iKdl~-~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~l~g~~-d~ 147 (157)
T COG3352 73 QLQDIKEELERLEENIKDLV-SLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLRELYGVP-DI 147 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCC-cH
Confidence 34467788899998885553 3344444444445544333333 367777776666666777777777777766 65
No 38
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.11 E-value=3.8e+02 Score=25.98 Aligned_cols=16 Identities=19% Similarity=0.522 Sum_probs=12.4
Q ss_pred HhccchhHHHHHhccC
Q 011550 461 ELKMEASEVENLFGRA 476 (483)
Q Consensus 461 ~~~~~~~~~~~~~~~~ 476 (483)
..+|+.++|.+-||..
T Consensus 168 k~~~~~~~i~k~f~Ip 183 (188)
T PF03962_consen 168 KFGMDEEDIRKEFGIP 183 (188)
T ss_pred hcCCCHHHHHHHcCCc
Confidence 3678888888888854
No 39
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=23.32 E-value=3.8e+02 Score=22.14 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=18.0
Q ss_pred HhHHHHHHHhcHHHHHHHHHhcc
Q 011550 442 KDEEKFLRELSKEEMDLLSELKM 464 (483)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~ 464 (483)
+....+.++..+.|+..||++.+
T Consensus 98 ~~~~~~~~~~~r~Eq~~lDE~a~ 120 (123)
T PF02050_consen 98 RRREEYQQEEERREQKELDEIAS 120 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677889999999999998864
No 40
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=22.58 E-value=2.5e+02 Score=33.00 Aligned_cols=17 Identities=24% Similarity=0.110 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCCCCCCe
Q 011550 364 PELERAAKSVGRDFNKF 380 (483)
Q Consensus 364 ekv~a~Lks~GiD~skf 380 (483)
.....+|+..|++.+=+
T Consensus 488 S~a~~iA~~~Glp~~ii 504 (782)
T PRK00409 488 SNAFEIAKRLGLPENII 504 (782)
T ss_pred cHHHHHHHHhCcCHHHH
Confidence 45667788888886643
No 41
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=22.00 E-value=5.1e+02 Score=24.25 Aligned_cols=69 Identities=17% Similarity=0.371 Sum_probs=35.4
Q ss_pred chHHHHHHHHHHHcCCCCCCeEEcCCCCCCCCchhHHHHHHHhhhhhhhhHHHHHHHH----HHHHhccchHHHHHHHHH
Q 011550 360 ETIVPELERAAKSVGRDFNKFIRTDNTCGPEPPLVERLEKKVEEGERTIIKEVEQLEG----EVEKVGRTEMTLFQRLAE 435 (483)
Q Consensus 360 ~eiiekv~a~Lks~GiD~skfi~TdQsC~~e~pL~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 435 (483)
++.+..+..++.+.+++..--..-..-..+-||+++-.++.+ ++++.++-+ .|..++++-+.-++++..
T Consensus 54 ~~~i~~I~kAI~~s~l~l~p~~d~~~i~v~iP~~T~E~R~~l-------~k~~k~~~E~~k~~iR~iR~~~~~~lkk~~~ 126 (165)
T PF01765_consen 54 PSLIKAIEKAIQKSNLNLNPQNDGNTIRVPIPPPTEERRKEL-------VKQAKKIAEEAKVSIRNIRRDAMKKLKKLKK 126 (165)
T ss_dssp TTHHHHHHHHHHHTTSSSEEEEETTEEEEE--SSSHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHCCCCCCcccCCcEEEEECCCCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 567888888888777644322111113667788874333333 333333333 345556666666655543
No 42
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=21.86 E-value=2.2e+02 Score=27.81 Aligned_cols=26 Identities=38% Similarity=0.544 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcHHHHHHHH
Q 011550 427 MTLFQRLAEGFKELQKDEEKFLRELSKEEMDLLS 460 (483)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (483)
-.-++...|-.||.|+|- +|-||+|-
T Consensus 81 FDKL~EFVEIMKeMQkDM--------DEKMDvLi 106 (205)
T PF15079_consen 81 FDKLHEFVEIMKEMQKDM--------DEKMDVLI 106 (205)
T ss_pred HHHHHHHHHHHHHHHHhH--------HHhhhHHh
Confidence 334555667788888885 35666663
No 43
>PF14412 AHH: A nuclease family of the HNH/ENDO VII superfamily with conserved AHH
Probab=21.34 E-value=1.2e+02 Score=26.05 Aligned_cols=58 Identities=26% Similarity=0.365 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCCCCC---eEEcCC--------CCCC-----CCchhHHHHHHHh---hhhhhhhHHHHHHHHHH
Q 011550 362 IVPELERAAKSVGRDFNK---FIRTDN--------TCGP-----EPPLVERLEKKVE---EGERTIIKEVEQLEGEV 419 (483)
Q Consensus 362 iiekv~a~Lks~GiD~sk---fi~TdQ--------sC~~-----e~pL~~~~~~~~~---~~~~~~~~~~~~~~~~~ 419 (483)
...+.+.++.+.|||.+. +++.+. -+.. ..-+.++|.+... .+...+.+++.+|+.++
T Consensus 29 ~~~~~~~~l~~~g~~in~~~Ngv~Lp~~~~~~~~~H~g~H~~~Y~~~V~~~L~~~~~~~~~~~~~~~~~l~~i~~~l 105 (109)
T PF14412_consen 29 RSPKLRKILEKYGIDINDPENGVWLPNSEKPGRPPHRGRHPNEYNKYVRERLDKIENSKKENREEFRKELQKIKNEL 105 (109)
T ss_pred ccHHHHHHHHHcCCCcCCccceeeeeccCCCCcCCcCCCCcHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 457888999999998655 555552 1122 2223345554444 23445555565555555
No 44
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=20.95 E-value=7e+02 Score=24.33 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCCCCCeEEcCCCCCCCCchhHHHHHHHhh--hhhhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 011550 363 VPELERAAKSVGRDFNKFIRTDNTCGPEPPLVERLEKKVEE--GERTIIKEVEQLEGEVEKVGRTEMTLFQRLAEGFKEL 440 (483)
Q Consensus 363 iekv~a~Lks~GiD~skfi~TdQsC~~e~pL~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (483)
+.+....+...|||...+ -.||.+-+.- +....+.+.+.++.++++. ..+.+++.+.+++|
T Consensus 74 ~~~tl~~LE~~GFnV~~l-------------~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~----~~~~~~~e~~i~~L 136 (190)
T PF05266_consen 74 LMKTLSELEEHGFNVKFL-------------RSRLNKLLSLKDDQEKLLEERKKLEKKIEEK----EAELKELESEIKEL 136 (190)
T ss_pred HHHHHHHHHHcCCccHHH-------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHHHH
Confidence 344455567889987643 3355554432 5566777778888777544 33556666666666
Q ss_pred HHhHHHH
Q 011550 441 QKDEEKF 447 (483)
Q Consensus 441 ~~~~~~~ 447 (483)
++.-...
T Consensus 137 e~ki~el 143 (190)
T PF05266_consen 137 EMKILEL 143 (190)
T ss_pred HHHHHHH
Confidence 5544433
Done!