Query 011551
Match_columns 483
No_of_seqs 283 out of 1641
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 02:37:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 1.8E-86 3.9E-91 673.1 21.4 310 26-345 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 2.2E-45 4.7E-50 354.8 24.5 251 23-337 43-305 (305)
3 smart00768 X8 Possibly involve 99.9 7.5E-28 1.6E-32 200.2 8.3 83 383-466 1-84 (85)
4 PF07983 X8: X8 domain; Inter 99.9 2.5E-23 5.4E-28 170.1 6.3 73 383-455 1-78 (78)
5 PF07745 Glyco_hydro_53: Glyco 99.0 1.2E-07 2.5E-12 97.7 22.8 242 40-342 26-328 (332)
6 PF03198 Glyco_hydro_72: Gluca 98.7 3.7E-07 8.1E-12 92.4 14.8 127 25-156 29-182 (314)
7 COG3867 Arabinogalactan endo-1 98.4 9.5E-06 2E-10 81.2 16.0 249 39-345 64-390 (403)
8 PRK10150 beta-D-glucuronidase; 98.0 0.0013 2.7E-08 73.4 23.5 258 26-344 295-586 (604)
9 PF00150 Cellulase: Cellulase 97.9 0.002 4.4E-08 63.4 20.0 128 25-154 10-171 (281)
10 smart00633 Glyco_10 Glycosyl h 97.1 0.041 9E-07 54.6 18.5 79 246-342 171-250 (254)
11 PF11790 Glyco_hydro_cc: Glyco 96.7 0.088 1.9E-06 52.0 16.6 66 258-338 166-231 (239)
12 PF02836 Glyco_hydro_2_C: Glyc 95.2 0.53 1.1E-05 47.7 14.6 96 25-120 17-132 (298)
13 PRK10340 ebgA cryptic beta-D-g 86.4 35 0.00076 40.9 18.3 98 25-122 336-452 (1021)
14 PRK09936 hypothetical protein; 85.2 22 0.00049 36.3 13.6 130 25-156 21-181 (296)
15 PF00232 Glyco_hydro_1: Glycos 82.2 0.62 1.3E-05 50.4 1.3 73 255-336 353-430 (455)
16 cd02875 GH18_chitobiase Chitob 81.8 6 0.00013 41.5 8.5 95 51-148 55-151 (358)
17 PF02449 Glyco_hydro_42: Beta- 77.0 10 0.00023 39.7 8.5 82 41-122 13-140 (374)
18 TIGR03356 BGL beta-galactosida 71.6 11 0.00025 40.4 7.3 77 255-338 335-414 (427)
19 PF14488 DUF4434: Domain of un 61.6 1E+02 0.0022 28.8 10.6 87 63-154 69-160 (166)
20 smart00481 POLIIIAc DNA polyme 61.4 26 0.00057 27.0 5.7 44 37-80 14-62 (67)
21 cd02874 GH18_CFLE_spore_hydrol 59.6 57 0.0012 33.1 9.4 82 62-147 48-138 (313)
22 COG3934 Endo-beta-mannanase [C 59.6 35 0.00077 37.3 7.9 255 26-343 6-312 (587)
23 cd02872 GH18_chitolectin_chito 57.3 42 0.00091 34.8 8.1 76 70-146 68-151 (362)
24 PF00925 GTP_cyclohydro2: GTP 57.1 13 0.00029 34.8 3.9 37 43-79 131-167 (169)
25 COG4782 Uncharacterized protei 54.8 47 0.001 35.1 7.7 60 235-297 125-187 (377)
26 PF06180 CbiK: Cobalt chelatas 51.8 1.2E+02 0.0026 30.6 10.0 140 36-207 56-209 (262)
27 PRK13511 6-phospho-beta-galact 51.5 53 0.0012 35.8 7.9 75 255-338 365-446 (469)
28 TIGR00505 ribA GTP cyclohydrol 50.0 24 0.00053 33.7 4.5 33 44-76 131-163 (191)
29 PLN03030 cationic peroxidase; 49.8 13 0.00028 38.7 2.7 56 6-61 3-66 (324)
30 PRK00393 ribA GTP cyclohydrola 49.5 25 0.00054 33.8 4.5 33 44-76 134-166 (197)
31 PLN03059 beta-galactosidase; P 46.1 3.7E+02 0.0079 31.8 13.7 153 3-158 5-223 (840)
32 PRK09525 lacZ beta-D-galactosi 45.7 1.1E+02 0.0024 36.9 9.9 97 25-121 352-464 (1027)
33 cd06545 GH18_3CO4_chitinase Th 44.6 52 0.0011 32.4 6.1 81 63-147 50-133 (253)
34 PF04909 Amidohydro_2: Amidohy 44.0 56 0.0012 31.4 6.1 118 93-268 56-175 (273)
35 cd02873 GH18_IDGF The IDGF's ( 43.2 1.1E+02 0.0024 32.7 8.7 17 131-147 171-187 (413)
36 PLN02998 beta-glucosidase 41.4 74 0.0016 35.1 7.1 75 255-338 390-466 (497)
37 PRK12485 bifunctional 3,4-dihy 40.8 32 0.0007 36.4 4.1 32 44-76 331-362 (369)
38 PF05990 DUF900: Alpha/beta hy 40.8 85 0.0018 30.8 6.8 55 239-296 31-88 (233)
39 cd00641 GTP_cyclohydro2 GTP cy 40.1 42 0.00091 32.1 4.4 33 44-76 133-165 (193)
40 PF03662 Glyco_hydro_79n: Glyc 39.9 86 0.0019 32.6 6.9 80 64-144 114-202 (319)
41 cd00598 GH18_chitinase-like Th 39.5 43 0.00093 31.4 4.4 84 63-147 53-142 (210)
42 PLN02814 beta-glucosidase 39.2 86 0.0019 34.6 7.2 75 255-338 385-461 (504)
43 PRK09989 hypothetical protein; 38.7 3.8E+02 0.0083 26.1 11.9 51 26-77 4-58 (258)
44 TIGR01579 MiaB-like-C MiaB-lik 37.5 4.8E+02 0.01 27.6 12.5 140 36-206 165-330 (414)
45 PLN02849 beta-glucosidase 37.3 1.1E+02 0.0024 33.8 7.6 75 255-338 383-461 (503)
46 PRK14019 bifunctional 3,4-dihy 36.5 42 0.0009 35.6 4.1 32 44-76 328-359 (367)
47 KOG0626 Beta-glucosidase, lact 36.4 76 0.0017 35.1 6.1 75 254-336 404-486 (524)
48 PRK09589 celA 6-phospho-beta-g 34.2 80 0.0017 34.6 6.0 75 258-338 368-447 (476)
49 PRK09593 arb 6-phospho-beta-gl 33.9 63 0.0014 35.4 5.1 74 258-338 369-448 (478)
50 TIGR03632 bact_S11 30S ribosom 33.4 97 0.0021 26.9 5.2 36 41-76 50-90 (108)
51 cd04743 NPD_PKS 2-Nitropropane 33.1 2.8E+02 0.0062 28.8 9.5 79 24-120 56-134 (320)
52 PRK09314 bifunctional 3,4-dihy 32.2 57 0.0012 34.2 4.2 36 41-76 298-334 (339)
53 PRK08815 GTP cyclohydrolase; P 32.1 60 0.0013 34.5 4.4 37 44-80 305-341 (375)
54 PRK09318 bifunctional 3,4-dihy 31.5 63 0.0014 34.5 4.5 37 44-80 320-356 (387)
55 PRK09311 bifunctional 3,4-dihy 31.1 65 0.0014 34.6 4.5 34 43-76 338-371 (402)
56 cd04734 OYE_like_3_FMN Old yel 31.0 6.2E+02 0.013 26.3 13.6 129 166-300 64-207 (343)
57 PRK09852 cryptic 6-phospho-bet 30.9 75 0.0016 34.8 5.1 73 258-338 366-444 (474)
58 PLN02831 Bifunctional GTP cycl 30.7 65 0.0014 35.1 4.5 34 44-77 373-406 (450)
59 PRK06552 keto-hydroxyglutarate 30.5 5.1E+02 0.011 25.1 10.5 87 37-143 116-210 (213)
60 cd02876 GH18_SI-CLP Stabilin-1 30.4 3.6E+02 0.0077 27.4 9.7 85 62-147 54-148 (318)
61 cd06418 GH25_BacA-like BacA is 30.3 5.2E+02 0.011 25.1 11.7 107 38-148 21-143 (212)
62 PF02055 Glyco_hydro_30: O-Gly 30.1 6.5E+02 0.014 27.8 12.2 60 96-155 208-278 (496)
63 PRK09319 bifunctional 3,4-dihy 29.6 69 0.0015 35.7 4.5 37 44-80 343-379 (555)
64 PRK15014 6-phospho-beta-glucos 29.3 82 0.0018 34.5 5.0 74 258-338 369-448 (477)
65 KOG0078 GTP-binding protein SE 29.0 1.4E+02 0.003 29.2 5.9 79 23-120 42-127 (207)
66 smart00636 Glyco_18 Glycosyl h 28.8 1E+02 0.0023 31.3 5.5 79 65-145 57-142 (334)
67 PF00331 Glyco_hydro_10: Glyco 28.0 72 0.0016 32.8 4.2 91 243-341 219-311 (320)
68 TIGR03628 arch_S11P archaeal r 27.8 1.3E+02 0.0029 26.5 5.2 37 40-76 52-101 (114)
69 COG4213 XylF ABC-type xylose t 27.7 1.3E+02 0.0028 31.4 5.7 75 62-155 175-249 (341)
70 COG1433 Uncharacterized conser 27.0 1.3E+02 0.0027 26.9 4.9 39 42-80 56-94 (121)
71 PF14587 Glyco_hydr_30_2: O-Gl 25.9 5.4E+02 0.012 27.6 10.1 93 63-158 108-227 (384)
72 PF06117 DUF957: Enterobacteri 24.7 1.1E+02 0.0023 24.3 3.5 40 94-145 13-55 (65)
73 CHL00041 rps11 ribosomal prote 23.9 1.8E+02 0.0039 25.6 5.3 36 41-76 63-103 (116)
74 PRK07198 hypothetical protein; 23.7 67 0.0014 34.4 2.9 37 44-80 338-375 (418)
75 PRK09607 rps11p 30S ribosomal 23.5 1.7E+02 0.0038 26.5 5.2 37 40-76 59-108 (132)
76 TIGR02495 NrdG2 anaerobic ribo 23.3 5.9E+02 0.013 23.4 11.1 41 37-77 46-95 (191)
77 COG2159 Predicted metal-depend 22.8 3.9E+02 0.0085 27.2 8.3 95 133-272 113-209 (293)
78 COG0807 RibA GTP cyclohydrolas 22.5 1.3E+02 0.0027 29.1 4.3 38 44-81 133-170 (193)
79 COG2896 MoaA Molybdenum cofact 22.4 8.4E+02 0.018 25.5 10.6 137 36-207 41-189 (322)
80 PF15183 MRAP: Melanocortin-2 22.4 75 0.0016 26.6 2.4 23 2-24 44-66 (90)
81 PF14871 GHL6: Hypothetical gl 22.2 2.2E+02 0.0047 25.6 5.6 42 39-80 1-65 (132)
82 PRK14327 (dimethylallyl)adenos 21.5 5.5E+02 0.012 28.4 9.7 57 128-204 346-402 (509)
83 PF02811 PHP: PHP domain; Int 21.4 1.7E+02 0.0038 26.0 5.0 45 37-81 15-64 (175)
84 PRK03941 NTPase; Reviewed 21.0 6E+02 0.013 24.1 8.5 60 73-144 1-61 (174)
85 TIGR01233 lacG 6-phospho-beta- 20.3 2.8E+02 0.0062 30.2 7.1 75 255-338 364-444 (467)
86 PF00150 Cellulase: Cellulase 20.0 6E+02 0.013 24.4 8.8 65 241-321 62-133 (281)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=1.8e-86 Score=673.13 Aligned_cols=310 Identities=54% Similarity=0.935 Sum_probs=255.1
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecCChHHHHHhhcCCCeEEEecCcchhHHhhhChhHHHHHHHHhhhhc
Q 011551 26 VGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKY 105 (483)
Q Consensus 26 ~GvnYg~~~~n~ps~~~v~~~l~~~~~~~VRiY~~d~~vL~A~~~tgi~v~vGv~n~~l~~la~~~~~a~~wv~~~v~~~ 105 (483)
||||||+.++|+|+|.+|+++||+++|++||||++|+++|+|++++||+|++||+|++|+++++++..|..||++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCcccccccchhhhhhH
Q 011551 106 YPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPM 185 (483)
Q Consensus 106 ~p~~~I~~I~VGNEvl~~~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~l~~~ 185 (483)
+|+++|++|+||||++..... ..|||+|+++|++|++.||+++|||+|+++++++.++||||+|.|++++. ..|.++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~--~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~-~~~~~~ 157 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDN--AYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIA-SVMDPL 157 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGG--GGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHH-HHHHHH
T ss_pred CcccceeeeecccccccCccc--eeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccch-hhhhHH
Confidence 999999999999999986422 15999999999999999999899999999999999999999999999887 689999
Q ss_pred HHHHHhcCCcceeccCCccccccCCCccccccccccCCCCcccCCCCccccchHHHHHHHHHHHHHhcCCCCceEEEEec
Q 011551 186 LEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTET 265 (483)
Q Consensus 186 ldfL~~t~sp~~vNiyPyf~~~~~~~~i~ldyAlf~~~~~~~d~~~g~~Y~n~fda~~dav~~A~~k~g~~~~~vvVtET 265 (483)
++||.+|+||||+|+||||.+..+|..++||||+|+++..++|. +++|+||||+|+|++++||+|+|+++++|+|+||
T Consensus 158 l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~D~--~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ET 235 (310)
T PF00332_consen 158 LKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVVDG--GLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGET 235 (310)
T ss_dssp HHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SEET--TEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE
T ss_pred HHHhhccCCCceeccchhhhccCCcccCCccccccccccccccc--chhhhHHHHHHHHHHHHHHHHhCCCCceeEEecc
Confidence 99999999999999999999999999999999999998777765 8899999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCCCCCCCCCCccccccCCCCCeeeeecc
Q 011551 266 GWPSVGDENEAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKPGPTSERNYGLFYPNEQTVYDSPF 345 (483)
Q Consensus 266 GWPS~G~~~~~~as~~Na~~y~~~li~~~~s~~Gtp~rpg~~~~~yiF~lFDE~~K~g~~~E~~wGlf~~d~~~ky~l~~ 345 (483)
||||+|+ .+++++||+.|++++++|+. .|||+||+..+++||||||||+||+++.+|||||||++||+|||+|+|
T Consensus 236 GWPs~G~---~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 236 GWPSAGD---PGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp ---SSSS---TTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred ccccCCC---CCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 9999998 35999999999999999997 699999999999999999999999987799999999999999999986
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-45 Score=354.78 Aligned_cols=251 Identities=22% Similarity=0.331 Sum_probs=207.2
Q ss_pred CCceeEEecCCCCC--CCCHHHHHHHHHhC-CC-CEEEEecCC----hHHHHHhhcCCCeEEEecCcc-hhHHhhhChhH
Q 011551 23 TGKVGINYGRVANN--LPSPEKVVELLKSQ-RI-DRVKTYDTD----SAVLAALANSDISVVVAFPNE-ELSKAAADQSF 93 (483)
Q Consensus 23 ~~~~GvnYg~~~~n--~ps~~~v~~~l~~~-~~-~~VRiY~~d----~~vL~A~~~tgi~v~vGv~n~-~l~~la~~~~~ 93 (483)
.+..+|+||++.++ ||+.++|..+|+.. .+ ..||+|++| .+|++|+...|++|+||||-. ++. ..
T Consensus 43 ~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~------~~ 116 (305)
T COG5309 43 SGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIH------DA 116 (305)
T ss_pred ccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchh------hh
Confidence 45689999999887 99999998877753 33 399999988 468899999999999999853 222 12
Q ss_pred HHHHHHHhhhhcCCCceEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCccc
Q 011551 94 TDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSF 173 (483)
Q Consensus 94 a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F 173 (483)
.+..++..+++++.++.|++|+||||+|+|++.+..+|+.+|..+|.+|+.+|++ +||+|+++|.+|.+.
T Consensus 117 ~~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~n-------- 186 (305)
T COG5309 117 VEKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVINN-------- 186 (305)
T ss_pred HHHHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeCC--------
Confidence 2335667788888889999999999999998876666999999999999999997 469999999998862
Q ss_pred ccccchhhhhhHHHHHHhcCCcceeccCCccccccCCCccccccccccCCCCcccCCCCccccchHHHHHHHHHHHHHhc
Q 011551 174 KSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAI 253 (483)
Q Consensus 174 ~~~~~~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~~~~i~ldyAlf~~~~~~~d~~~g~~Y~n~fda~~dav~~A~~k~ 253 (483)
|.|++..||+ |+|.||||+.+.-.+ +. + .+|-.|++.|++++
T Consensus 187 ------p~l~~~SDfi-------a~N~~aYwd~~~~a~----------------~~-----~-~f~~~q~e~vqsa~--- 228 (305)
T COG5309 187 ------PELCQASDFI-------AANAHAYWDGQTVAN----------------AA-----G-TFLLEQLERVQSAC--- 228 (305)
T ss_pred ------hHHhhhhhhh-------hcccchhccccchhh----------------hh-----h-HHHHHHHHHHHHhc---
Confidence 5688888888 999999999854211 11 1 25567788888876
Q ss_pred CCCCceEEEEeccCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCCCCC-CC-CCCccc
Q 011551 254 SYNDVKVVVTETGWPSVGDEN-EAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKP-GP-TSERNY 330 (483)
Q Consensus 254 g~~~~~vvVtETGWPS~G~~~-~~~as~~Na~~y~~~li~~~~s~~Gtp~rpg~~~~~yiF~lFDE~~K~-g~-~~E~~w 330 (483)
| .+++++|+||||||.|..+ ++.||++||+.|++++++.+++ .++++|+||+|||+||+ |. ++|+||
T Consensus 229 g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~---------~G~d~fvfeAFdd~WK~~~~y~VEkyw 298 (305)
T COG5309 229 G-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS---------CGYDVFVFEAFDDDWKADGSYGVEKYW 298 (305)
T ss_pred C-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc---------cCccEEEeeeccccccCccccchhhce
Confidence 2 3499999999999999997 4789999999999999998864 36899999999999995 44 899999
Q ss_pred cccCCCC
Q 011551 331 GLFYPNE 337 (483)
Q Consensus 331 Glf~~d~ 337 (483)
|+++.|+
T Consensus 299 Gv~~s~~ 305 (305)
T COG5309 299 GVLSSDR 305 (305)
T ss_pred eeeccCC
Confidence 9998875
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.95 E-value=7.5e-28 Score=200.18 Aligned_cols=83 Identities=63% Similarity=1.144 Sum_probs=79.8
Q ss_pred ceEEecCCCChHHHHHHhhhhccCCCCCCcccCCCCcccCCCChhhhHhHHHhHHHHHccCCCCCCCCCCceEEEccCCC
Q 011551 383 TWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPS 462 (483)
Q Consensus 383 ~~CV~~~~~~~~~l~~~l~~aCg~~~~dC~~I~~~g~c~~~~t~~~~~Sya~N~Yyq~~~~~~~~CdF~G~a~~~~~dps 462 (483)
+|||+|+++++++||++|+|||+++ +||++|++||+||+||++++|||||||+|||++++..++|||+|.|++++.|||
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~-~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps 79 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQG-ADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPS 79 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCC-CCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCC
Confidence 5999999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred C-ccc
Q 011551 463 K-IWK 466 (483)
Q Consensus 463 ~-~c~ 466 (483)
+ +|+
T Consensus 80 ~~~C~ 84 (85)
T smart00768 80 TGSCK 84 (85)
T ss_pred CCccC
Confidence 7 474
No 4
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.88 E-value=2.5e-23 Score=170.15 Aligned_cols=73 Identities=53% Similarity=1.021 Sum_probs=63.6
Q ss_pred ceEEecCCCChHHHHHHhhhhccCCCCCCcccCCCCc-----ccCCCChhhhHhHHHhHHHHHccCCCCCCCCCCceE
Q 011551 383 TWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGAT-----CYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAY 455 (483)
Q Consensus 383 ~~CV~~~~~~~~~l~~~l~~aCg~~~~dC~~I~~~g~-----c~~~~t~~~~~Sya~N~Yyq~~~~~~~~CdF~G~a~ 455 (483)
+|||+++++++++|+++|||||+++++||++|+++|+ .||+|+.++|||||||+|||++++...+|||+|+||
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 6999999999999999999999998899999999999 899999999999999999999999999999999997
No 5
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.97 E-value=1.2e-07 Score=97.71 Aligned_cols=242 Identities=18% Similarity=0.261 Sum_probs=120.9
Q ss_pred HHHHHHHHHhCCCCEEE--Eec-C------C-hHHH---HHhhcCCCeEEEecCcc---------hh---------HHhh
Q 011551 40 PEKVVELLKSQRIDRVK--TYD-T------D-SAVL---AALANSDISVVVAFPNE---------EL---------SKAA 88 (483)
Q Consensus 40 ~~~v~~~l~~~~~~~VR--iY~-~------d-~~vL---~A~~~tgi~v~vGv~n~---------~l---------~~la 88 (483)
..++.++||..|++.|| +|. + | ..++ +.+++.||+|+|-.--. .+ ..|+
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 46789999999987555 552 1 1 2344 55568999999988211 11 2222
Q ss_pred hChhHHHHHHHHhhhhcC-CCceEEEEEeccccccC---C--C-CChhhHHHHHHHHHHHHHhCCCCCCeEEeccccccc
Q 011551 89 ADQSFTDNWVQANISKYY-PATKIEAVAVGNEVFAD---P--K-NTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGA 161 (483)
Q Consensus 89 ~~~~~a~~wv~~~v~~~~-p~~~I~~I~VGNEvl~~---~--~-~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~~~~v 161 (483)
++..++.+.-+...- -++.++.|-||||+-.. . . .....+...++...+++|+..-+ +||-.-.. ..
T Consensus 106 ---~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~--~kV~lH~~-~~ 179 (332)
T PF07745_consen 106 ---KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPN--IKVMLHLA-NG 179 (332)
T ss_dssp ---HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSST--SEEEEEES--T
T ss_pred ---HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEC-CC
Confidence 122223332222221 24678899999997543 1 1 22233888888888888885443 44432111 00
Q ss_pred ccccCCCCCcccccccchhhhhhHHHHHHhc---CCcceeccCCccccccCCCccccccccccCCCCcccCCCCccccch
Q 011551 162 LQNSYPPSSGSFKSDLIEPALKPMLEFLRKT---SSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNL 238 (483)
Q Consensus 162 l~~s~pPS~g~F~~~~~~~~l~~~ldfL~~t---~sp~~vNiyPyf~~~~~~~~i~ldyAlf~~~~~~~d~~~g~~Y~n~ 238 (483)
.. . ..+.-..+-|... =|.++++.||||.... +-
T Consensus 180 ~~------~---------~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~l----------------------------~~ 216 (332)
T PF07745_consen 180 GD------N---------DLYRWFFDNLKAAGVDFDVIGLSYYPFWHGTL----------------------------ED 216 (332)
T ss_dssp TS------H---------HHHHHHHHHHHHTTGG-SEEEEEE-STTST-H----------------------------HH
T ss_pred Cc------h---------HHHHHHHHHHHhcCCCcceEEEecCCCCcchH----------------------------HH
Confidence 00 0 1123333444333 2678999999997621 11
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCC-----CC---------CCCCHHHHHHHHHHHHHHHHhCCCCCCCC
Q 011551 239 FDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGDE-----NE---------AGAGAANAAAYNGNLVRRVLSGSGTPLRP 304 (483)
Q Consensus 239 fda~~dav~~A~~k~g~~~~~vvVtETGWPS~G~~-----~~---------~~as~~Na~~y~~~li~~~~s~~Gtp~rp 304 (483)
+...++.+. ++. +|+|+|.|||||..-+. +. -.+|++.|+.|++.+++.+.+..+
T Consensus 217 l~~~l~~l~---~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~----- 285 (332)
T PF07745_consen 217 LKNNLNDLA---SRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN----- 285 (332)
T ss_dssp HHHHHHHHH---HHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------
T ss_pred HHHHHHHHH---HHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc-----
Confidence 333333332 332 68999999999998211 11 126899999999999999975211
Q ss_pred CCCccEEEEEe-cCCCC-----CCCCCCCccccccCCCCCeeee
Q 011551 305 KDPLNVYLFAL-FNENQ-----KPGPTSERNYGLFYPNEQTVYD 342 (483)
Q Consensus 305 g~~~~~yiF~l-FDE~~-----K~g~~~E~~wGlf~~d~~~ky~ 342 (483)
+..+-+|+-|- .-..+ ..|...|.. +||+.+|++--.
T Consensus 286 ~~g~GvfYWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~s 328 (332)
T PF07745_consen 286 GGGLGVFYWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPS 328 (332)
T ss_dssp TTEEEEEEE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GG
T ss_pred CCeEEEEeeccccccCCcccccCCCCCcccc-ccCCCCCCCchH
Confidence 12345555442 22211 133334433 899988876433
No 6
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.68 E-value=3.7e-07 Score=92.41 Aligned_cols=127 Identities=19% Similarity=0.339 Sum_probs=72.3
Q ss_pred ceeEEecCCCC-------CCCCHHHH----HHHHHhCCCCEEEEecCCh-----HHHHHhhcCCCeEEEecCcc--hhHH
Q 011551 25 KVGINYGRVAN-------NLPSPEKV----VELLKSQRIDRVKTYDTDS-----AVLAALANSDISVVVAFPNE--ELSK 86 (483)
Q Consensus 25 ~~GvnYg~~~~-------n~ps~~~v----~~~l~~~~~~~VRiY~~d~-----~vL~A~~~tgi~v~vGv~n~--~l~~ 86 (483)
..||.|-|.++ |..+-.++ +.+||.+|++.||+|..|| .-+++|++.||-|++.|... .|..
T Consensus 29 ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~~sI~r 108 (314)
T PF03198_consen 29 IKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPNGSINR 108 (314)
T ss_dssp EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTTBS--T
T ss_pred EeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCCccccC
Confidence 47999988765 32232333 3478899999999998884 57899999999999999542 2222
Q ss_pred hhhChhHHHHH-------HHHhhhhcCCCceEEEEEeccccccCCCC-Chhh-HHHHHHHHHHHHHhCCCCCCeEEecc
Q 011551 87 AAADQSFTDNW-------VQANISKYYPATKIEAVAVGNEVFADPKN-TTPF-LVPAMKNVYNSLVKYKLDSNVKVSSP 156 (483)
Q Consensus 87 la~~~~~a~~w-------v~~~v~~~~p~~~I~~I~VGNEvl~~~~~-~~~~-Ll~am~nv~~aL~~~gl~~~IkVsT~ 156 (483)
. ++ +..| +.+-|..|..=+|+-+..+|||++..... ..++ +-.+++.+|+-+++.++. +|+|+-+
T Consensus 109 ~--~P--~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYs 182 (314)
T PF03198_consen 109 S--DP--APSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYS 182 (314)
T ss_dssp T--S--------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEE
T ss_pred C--CC--cCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEE
Confidence 1 11 1122 22234444333789999999999987432 2455 888999999999999985 4999855
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.41 E-value=9.5e-06 Score=81.22 Aligned_cols=249 Identities=18% Similarity=0.294 Sum_probs=134.4
Q ss_pred CHHHHHHHHHhCCCCEEEE--e----cCC--------hH------HHHHhhcCCCeEEEecCcchhHHhhhCh---hHHH
Q 011551 39 SPEKVVELLKSQRIDRVKT--Y----DTD--------SA------VLAALANSDISVVVAFPNEELSKAAADQ---SFTD 95 (483)
Q Consensus 39 s~~~v~~~l~~~~~~~VRi--Y----~~d--------~~------vL~A~~~tgi~v~vGv~n~~l~~la~~~---~~a~ 95 (483)
-.+++.+.||..|++.||| | |.| .+ +-+.+++.||||++-.--.|- -.++ ..-.
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDf---waDPakQ~kPk 140 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDF---WADPAKQKKPK 140 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhh---ccChhhcCCcH
Confidence 4577889999999875554 4 343 12 224456899999998732211 0011 0111
Q ss_pred HH-------HHHhhhhc--------C-CCceEEEEEeccccccC---CCCCh---hhHHHHHHHHHHHHHhCCCCCCeEE
Q 011551 96 NW-------VQANISKY--------Y-PATKIEAVAVGNEVFAD---PKNTT---PFLVPAMKNVYNSLVKYKLDSNVKV 153 (483)
Q Consensus 96 ~w-------v~~~v~~~--------~-p~~~I~~I~VGNEvl~~---~~~~~---~~Ll~am~nv~~aL~~~gl~~~IkV 153 (483)
+| ++++|-.| . ....+..|-||||.-.. .+++. ..+...++.-.+++|...- .|||
T Consensus 141 aW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p--~ikv 218 (403)
T COG3867 141 AWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSP--TIKV 218 (403)
T ss_pred HhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCC--CceE
Confidence 12 22222221 1 23567889999998543 12222 2266666666667766433 3665
Q ss_pred ecccccccccccCCCCCcccccccchhhhhhHHHHHHhcCCcceeccCCccccccCCCccccccccccCCCCcccCCCCc
Q 011551 154 SSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGL 233 (483)
Q Consensus 154 sT~~~~~vl~~s~pPS~g~F~~~~~~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~~~~i~ldyAlf~~~~~~~d~~~g~ 233 (483)
---. .+ |--.+.||- +.+..-+.-+|| |.++.--||||.+.-+ .+
T Consensus 219 ~lHl-----a~--g~~n~~y~~-~fd~ltk~nvdf-----DVig~SyYpyWhgtl~----------------------nL 263 (403)
T COG3867 219 ALHL-----AE--GENNSLYRW-IFDELTKRNVDF-----DVIGSSYYPYWHGTLN----------------------NL 263 (403)
T ss_pred EEEe-----cC--CCCCchhhH-HHHHHHHcCCCc-----eEEeeeccccccCcHH----------------------HH
Confidence 4321 11 112234431 111222333333 5678889999987432 00
Q ss_pred cccchHHHHHHHHHHHHHhcCCCCceEEEEeccC--------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Q 011551 234 KYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGW--------------PSVGDENEAGAGAANAAAYNGNLVRRVLSGSG 299 (483)
Q Consensus 234 ~Y~n~fda~~dav~~A~~k~g~~~~~vvVtETGW--------------PS~G~~~~~~as~~Na~~y~~~li~~~~s~~G 299 (483)
++.++++-+ + -+|.|+|.||+. |+.+...+--.+++-|++|.+++|+.+..
T Consensus 264 --~~nl~dia~-------r---Y~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n--- 328 (403)
T COG3867 264 --TTNLNDIAS-------R---YHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN--- 328 (403)
T ss_pred --HhHHHHHHH-------H---hcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh---
Confidence 112222222 1 368999999998 55553333347889999999999999874
Q ss_pred CCCCCCCCccEEEEE-------------------ecCCCCCCCCCCCccccccCCCCCeeeeecc
Q 011551 300 TPLRPKDPLNVYLFA-------------------LFNENQKPGPTSERNYGLFYPNEQTVYDSPF 345 (483)
Q Consensus 300 tp~rpg~~~~~yiF~-------------------lFDE~~K~g~~~E~~wGlf~~d~~~ky~l~~ 345 (483)
.|.-. +.-+|+.| .-.|+|+.| ..--+--||+-+|.|.-.|++
T Consensus 329 vp~~~--GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~g-savdNqaLfdf~G~~LPSl~v 390 (403)
T COG3867 329 VPKSN--GLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEG-SAVDNQALFDFNGHPLPSLNV 390 (403)
T ss_pred CCCCC--ceEEEEecccceeccCCCccccchhhccCcccccCC-CccchhhhhhccCCcCcchhh
Confidence 22221 23344433 223556655 223344577777776655554
No 8
>PRK10150 beta-D-glucuronidase; Provisional
Probab=97.99 E-value=0.0013 Score=73.42 Aligned_cols=258 Identities=12% Similarity=0.079 Sum_probs=141.0
Q ss_pred eeEEecCCC---CCCCCHHHH---HHHHHhCCCCEEEEe--cCChHHHHHhhcCCCeEEEecCcchh-------------
Q 011551 26 VGINYGRVA---NNLPSPEKV---VELLKSQRIDRVKTY--DTDSAVLAALANSDISVVVAFPNEEL------------- 84 (483)
Q Consensus 26 ~GvnYg~~~---~n~ps~~~v---~~~l~~~~~~~VRiY--~~d~~vL~A~~~tgi~v~vGv~n~~l------------- 84 (483)
.|+|+=.-. ....+.+.. +++||..|++.||+- -.++..+.++...||-|+.=++....
T Consensus 295 rG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 295 KGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred EeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 477762211 112454544 457888999999993 33578999999999999865532100
Q ss_pred --HHhh------hChhHHHHHHHHhhhhcCCCceEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCCeEEecc
Q 011551 85 --SKAA------ADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSP 156 (483)
Q Consensus 85 --~~la------~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~ 156 (483)
.... ...+...+.++..|..+.-.-.|..=.+|||.-... ......++.+.+.+++..-.. +|+.+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~----~~~~~~~~~l~~~~k~~DptR--~vt~~ 448 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASRE----QGAREYFAPLAELTRKLDPTR--PVTCV 448 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCccc----hhHHHHHHHHHHHHHhhCCCC--ceEEE
Confidence 0000 001122333556676665445688899999964321 113344455555555544332 34443
Q ss_pred cccccccccCCCCCcccccccchhhhhhHHHHHHhcCCcceeccCCccccccCCCccccccccccCCCCcccCCCCcccc
Q 011551 157 IALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYT 236 (483)
Q Consensus 157 ~~~~vl~~s~pPS~g~F~~~~~~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~~~~i~ldyAlf~~~~~~~d~~~g~~Y~ 236 (483)
..+. . .|. . ..+.+++|++ ..|.|+=|-. +..+ .+ ...
T Consensus 449 ~~~~---~--~~~-----~----~~~~~~~Dv~-------~~N~Y~~wy~--~~~~----~~---------------~~~ 486 (604)
T PRK10150 449 NVMF---A--TPD-----T----DTVSDLVDVL-------CLNRYYGWYV--DSGD----LE---------------TAE 486 (604)
T ss_pred eccc---C--Ccc-----c----ccccCcccEE-------EEcccceecC--CCCC----HH---------------HHH
Confidence 2110 0 010 0 1234556666 8898753321 1000 00 001
Q ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEE
Q 011551 237 NLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGDEN---EAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLF 313 (483)
Q Consensus 237 n~fda~~dav~~A~~k~g~~~~~vvVtETGWPS~G~~~---~~~as~~Na~~y~~~li~~~~s~~Gtp~rpg~~~~~yiF 313 (483)
..|+..++... ++ + ++|++++|.|+.+.-+.. ...-+.+.|..|++...+.+.. +|. -.-.|+.
T Consensus 487 ~~~~~~~~~~~---~~--~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW 553 (604)
T PRK10150 487 KVLEKELLAWQ---EK--L-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVW 553 (604)
T ss_pred HHHHHHHHHHH---Hh--c-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEE
Confidence 12333333221 11 2 799999999976632111 1224688898888877776653 333 3558999
Q ss_pred EecCCCCCCCC--CCCccccccCCCCCeeeeec
Q 011551 314 ALFNENQKPGP--TSERNYGLFYPNEQTVYDSP 344 (483)
Q Consensus 314 ~lFDE~~K~g~--~~E~~wGlf~~d~~~ky~l~ 344 (483)
.+||-.+..|. ....+.||++.||+||-..-
T Consensus 554 ~~~D~~~~~g~~~~~g~~~Gl~~~dr~~k~~~~ 586 (604)
T PRK10150 554 NFADFATSQGILRVGGNKKGIFTRDRQPKSAAF 586 (604)
T ss_pred eeeccCCCCCCcccCCCcceeEcCCCCChHHHH
Confidence 99996554331 12347899999999995543
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.86 E-value=0.002 Score=63.44 Aligned_cols=128 Identities=14% Similarity=0.155 Sum_probs=79.9
Q ss_pred ceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecC-------------C-------hHHHHHhhcCCCeEEEecCcc-h
Q 011551 25 KVGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDT-------------D-------SAVLAALANSDISVVVAFPNE-E 83 (483)
Q Consensus 25 ~~GvnYg~~~~n~ps~~~v~~~l~~~~~~~VRiY~~-------------d-------~~vL~A~~~tgi~v~vGv~n~-~ 83 (483)
..|+|-. ..+.. ..++.++.+++.|++.|||.-. + ..+|++++..||.|+|.+... .
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 4566655 22122 7788899999999999999721 1 257788899999999987542 0
Q ss_pred ---hHHhhhChhHHHHHHHH---hhh-hcCCCceEEEEEeccccccCCCCC-----hhh-HHHHHHHHHHHHHhCCCCCC
Q 011551 84 ---LSKAAADQSFTDNWVQA---NIS-KYYPATKIEAVAVGNEVFADPKNT-----TPF-LVPAMKNVYNSLVKYKLDSN 150 (483)
Q Consensus 84 ---l~~la~~~~~a~~wv~~---~v~-~~~p~~~I~~I~VGNEvl~~~~~~-----~~~-Ll~am~nv~~aL~~~gl~~~ 150 (483)
-...........+|+++ .+. .|.....|.++=+.||+....... ... +...++.+.+++++.+-+..
T Consensus 88 w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~ 167 (281)
T PF00150_consen 88 WANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHL 167 (281)
T ss_dssp CSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSE
T ss_pred ccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcce
Confidence 00011112223334333 233 332345578999999998864321 124 88899999999999987644
Q ss_pred eEEe
Q 011551 151 VKVS 154 (483)
Q Consensus 151 IkVs 154 (483)
|-|.
T Consensus 168 i~~~ 171 (281)
T PF00150_consen 168 IIVG 171 (281)
T ss_dssp EEEE
T ss_pred eecC
Confidence 4444
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.13 E-value=0.041 Score=54.64 Aligned_cols=79 Identities=18% Similarity=0.156 Sum_probs=54.2
Q ss_pred HHHHHHhcCCCCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCC
Q 011551 246 VFAAMSAISYNDVKVVVTETGWPSVGDENEAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGP 324 (483)
Q Consensus 246 v~~A~~k~g~~~~~vvVtETGWPS~G~~~~~~as~~Na~~y~~~li~~~~s~~Gtp~rpg~~~~~yiF~lFDE-~~K~g~ 324 (483)
+...|++++--+++|+|||.+-|..+ +.+.|+.|++.+++.+.+. |. ...+++..+.|. .|.++
T Consensus 171 ~~~~l~~~~~~g~pi~iTE~dv~~~~-------~~~~qA~~~~~~l~~~~~~---p~----v~gi~~Wg~~d~~~W~~~- 235 (254)
T smart00633 171 IRAALDRFASLGLEIQITELDISGYP-------NPQAQAADYEEVFKACLAH---PA----VTGVTVWGVTDKYSWLDG- 235 (254)
T ss_pred HHHHHHHHHHcCCceEEEEeecCCCC-------cHHHHHHHHHHHHHHHHcC---CC----eeEEEEeCCccCCcccCC-
Confidence 33444444444899999999988742 3488899999999988752 22 233556666664 36543
Q ss_pred CCCccccccCCCCCeeee
Q 011551 325 TSERNYGLFYPNEQTVYD 342 (483)
Q Consensus 325 ~~E~~wGlf~~d~~~ky~ 342 (483)
.+-|||+.|++||-.
T Consensus 236 ---~~~~L~d~~~~~kpa 250 (254)
T smart00633 236 ---GAPLLFDANYQPKPA 250 (254)
T ss_pred ---CCceeECCCCCCChh
Confidence 467999999988743
No 11
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.70 E-value=0.088 Score=52.00 Aligned_cols=66 Identities=17% Similarity=0.167 Sum_probs=46.1
Q ss_pred ceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCCCCCCCCCCccccccCCCC
Q 011551 258 VKVVVTETGWPSVGDENEAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNENQKPGPTSERNYGLFYPNE 337 (483)
Q Consensus 258 ~~vvVtETGWPS~G~~~~~~as~~Na~~y~~~li~~~~s~~Gtp~rpg~~~~~yiF~lFDE~~K~g~~~E~~wGlf~~d~ 337 (483)
+||+|||.|+...+. ..+.+.++.|.+..+..+.+ ++. -..++||. |...+. ....+-.|++.+|
T Consensus 166 kPIWITEf~~~~~~~----~~~~~~~~~fl~~~~~~ld~------~~~-VeryawF~-~~~~~~---~~~~~~~L~~~~G 230 (239)
T PF11790_consen 166 KPIWITEFGCWNGGS----QGSDEQQASFLRQALPWLDS------QPY-VERYAWFG-FMNDGS---GVNPNSALLDADG 230 (239)
T ss_pred CCEEEEeecccCCCC----CCCHHHHHHHHHHHHHHHhc------CCC-eeEEEecc-cccccC---CCccccccccCCC
Confidence 999999999877222 38889999999999999975 222 34578888 333222 3455666777776
Q ss_pred C
Q 011551 338 Q 338 (483)
Q Consensus 338 ~ 338 (483)
+
T Consensus 231 ~ 231 (239)
T PF11790_consen 231 S 231 (239)
T ss_pred C
Confidence 4
No 12
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=95.22 E-value=0.53 Score=47.67 Aligned_cols=96 Identities=18% Similarity=0.159 Sum_probs=56.9
Q ss_pred ceeEEecCCCC---CCCCHHHHH---HHHHhCCCCEEEEec--CChHHHHHhhcCCCeEEEecCcch---hHH------h
Q 011551 25 KVGINYGRVAN---NLPSPEKVV---ELLKSQRIDRVKTYD--TDSAVLAALANSDISVVVAFPNEE---LSK------A 87 (483)
Q Consensus 25 ~~GvnYg~~~~---n~ps~~~v~---~~l~~~~~~~VRiY~--~d~~vL~A~~~tgi~v~vGv~n~~---l~~------l 87 (483)
..|||+..... ...+.+.+. +++|..|++.||+.. .++..+.++...||-|+..++... ... .
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 46999876533 245666664 467889999999963 357999999999999998776410 000 1
Q ss_pred hhCh---hHHHHHHHHhhhhcCCCceEEEEEecccc
Q 011551 88 AADQ---SFTDNWVQANISKYYPATKIEAVAVGNEV 120 (483)
Q Consensus 88 a~~~---~~a~~wv~~~v~~~~p~~~I~~I~VGNEv 120 (483)
..++ +...+.++..|..+.-.-.|..=.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 1122 23345566677766544457788899998
No 13
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=86.40 E-value=35 Score=40.93 Aligned_cols=98 Identities=18% Similarity=0.164 Sum_probs=59.6
Q ss_pred ceeEEecCCCC---CCCCHHHHH---HHHHhCCCCEEEEec--CChHHHHHhhcCCCeEEEecCcc--h------hHHhh
Q 011551 25 KVGINYGRVAN---NLPSPEKVV---ELLKSQRIDRVKTYD--TDSAVLAALANSDISVVVAFPNE--E------LSKAA 88 (483)
Q Consensus 25 ~~GvnYg~~~~---n~ps~~~v~---~~l~~~~~~~VRiY~--~d~~vL~A~~~tgi~v~vGv~n~--~------l~~la 88 (483)
..|+|+-.... ...+++++. +++|+.|++.||+-. .++..+.++...||=|+.-++.+ . ...+.
T Consensus 336 lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 35888643321 234566654 567889999999863 24678999999999988754211 0 00112
Q ss_pred hCh---hHHHHHHHHhhhhcCCCceEEEEEecccccc
Q 011551 89 ADQ---SFTDNWVQANISKYYPATKIEAVAVGNEVFA 122 (483)
Q Consensus 89 ~~~---~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~ 122 (483)
.++ +...+.+++.|....-.-.|..=.+|||.-.
T Consensus 416 ~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 416 DDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 222 1223445666666544456888889999743
No 14
>PRK09936 hypothetical protein; Provisional
Probab=85.21 E-value=22 Score=36.34 Aligned_cols=130 Identities=13% Similarity=0.125 Sum_probs=72.3
Q ss_pred ceeEEecCCCCC-CCCHHHHHHHHH---hCCCCEEEEe-----cCC--------hHHHHHhhcCCCeEEEecCcch--hH
Q 011551 25 KVGINYGRVANN-LPSPEKVVELLK---SQRIDRVKTY-----DTD--------SAVLAALANSDISVVVAFPNEE--LS 85 (483)
Q Consensus 25 ~~GvnYg~~~~n-~ps~~~v~~~l~---~~~~~~VRiY-----~~d--------~~vL~A~~~tgi~v~vGv~n~~--l~ 85 (483)
..|+=|-|...| --++++..++++ ..|++.+=+= +.| ...|+++...||+|.||++-|. -.
T Consensus 21 ~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~y~q 100 (296)
T PRK09936 21 MKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADPEFFM 100 (296)
T ss_pred cccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCChHHHH
Confidence 456779999877 568888877654 5788765442 223 4678888999999999998542 23
Q ss_pred HhhhChhHHHHHHHHhhhhc---------CCCceEE--EEEeccccccCCCCChhh-HHHHHHHHHHHHHhCCCCCCeEE
Q 011551 86 KAAADQSFTDNWVQANISKY---------YPATKIE--AVAVGNEVFADPKNTTPF-LVPAMKNVYNSLVKYKLDSNVKV 153 (483)
Q Consensus 86 ~la~~~~~a~~wv~~~v~~~---------~p~~~I~--~I~VGNEvl~~~~~~~~~-Ll~am~nv~~aL~~~gl~~~IkV 153 (483)
.+..|.+.-++|++.....- .+...++ +|-+-=|...-.+...-. |+..++++.+.|... .++|.|
T Consensus 101 ~~~~d~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~~l~~~--~kPv~I 178 (296)
T PRK09936 101 HQKQDGAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELDDLNWRDEARRQPLLTWLNAAQRLIDVS--AKPVHI 178 (296)
T ss_pred HHhcCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccchhcccCHHHHHHHHHHHHHHHHhCCCC--CCCeEE
Confidence 33334333344554422110 1223344 444433321111112223 777888887776522 234555
Q ss_pred ecc
Q 011551 154 SSP 156 (483)
Q Consensus 154 sT~ 156 (483)
|+-
T Consensus 179 Say 181 (296)
T PRK09936 179 SAF 181 (296)
T ss_pred Eee
Confidence 544
No 15
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=82.16 E-value=0.62 Score=50.38 Aligned_cols=73 Identities=12% Similarity=0.305 Sum_probs=38.8
Q ss_pred CCCceEEEEeccCCCCCCCCCCCCCHHH----HHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCC-CCCCCCCCcc
Q 011551 255 YNDVKVVVTETGWPSVGDENEAGAGAAN----AAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNEN-QKPGPTSERN 329 (483)
Q Consensus 255 ~~~~~vvVtETGWPS~G~~~~~~as~~N----a~~y~~~li~~~~s~~Gtp~rpg~~~~~yiF~lFDE~-~K~g~~~E~~ 329 (483)
+++++|+|||.|++.........---.. -+.+++.+.+.+. .|-+. .-+|..++.|-- |-. +..+.
T Consensus 353 Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~--dGv~V-----~GY~~WSl~Dn~Ew~~--Gy~~r 423 (455)
T PF00232_consen 353 YGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIE--DGVNV-----RGYFAWSLLDNFEWAE--GYKKR 423 (455)
T ss_dssp HTSSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHH--TT-EE-----EEEEEETSB---BGGG--GGGSE
T ss_pred cCCCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhc--cCCCe-----eeEeeecccccccccc--CccCc
Confidence 6779999999999887653221111122 2344444444443 35433 347788888853 544 47899
Q ss_pred ccccCCC
Q 011551 330 YGLFYPN 336 (483)
Q Consensus 330 wGlf~~d 336 (483)
|||++.|
T Consensus 424 fGl~~VD 430 (455)
T PF00232_consen 424 FGLVYVD 430 (455)
T ss_dssp --SEEEE
T ss_pred cCceEEc
Confidence 9999998
No 16
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=81.83 E-value=6 Score=41.48 Aligned_cols=95 Identities=11% Similarity=0.255 Sum_probs=57.8
Q ss_pred CCCEEEEecC-ChHHHHHhhcCCCeEEEecCcchhHHhhhChhHHHHHHHHhhhhcCCCceEEEEEeccccccCCCCChh
Q 011551 51 RIDRVKTYDT-DSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTP 129 (483)
Q Consensus 51 ~~~~VRiY~~-d~~vL~A~~~tgi~v~vGv~n~~l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~ 129 (483)
.++.|-+|+. |++++..+...|++|++..... .+.+ ++++.-..++++.| .+...-.+.+|-+==|-....+....
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~siv-~~~~~~gfDGIdIDwE~p~~~~~~d~ 131 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQQKV-ELAKSQFMDGINIDIEQPITKGSPEY 131 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHHHHH-HHHHHhCCCeEEEcccCCCCCCcchH
Confidence 4788888864 7899999899999999864321 1222 34444444555433 22222235566554454332111223
Q ss_pred h-HHHHHHHHHHHHHhCCCC
Q 011551 130 F-LVPAMKNVYNSLVKYKLD 148 (483)
Q Consensus 130 ~-Ll~am~nv~~aL~~~gl~ 148 (483)
. ++..|+++|++|++.+.+
T Consensus 132 ~~~t~llkelr~~l~~~~~~ 151 (358)
T cd02875 132 YALTELVKETTKAFKKENPG 151 (358)
T ss_pred HHHHHHHHHHHHHHhhcCCC
Confidence 3 889999999999987643
No 17
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=76.97 E-value=10 Score=39.67 Aligned_cols=82 Identities=17% Similarity=0.252 Sum_probs=50.0
Q ss_pred HHHHHHHHhCCCCEEEEecCC----------------hHHHHHhhcCCCeEEEecCcchhH--------H----------
Q 011551 41 EKVVELLKSQRIDRVKTYDTD----------------SAVLAALANSDISVVVAFPNEELS--------K---------- 86 (483)
Q Consensus 41 ~~v~~~l~~~~~~~VRiY~~d----------------~~vL~A~~~tgi~v~vGv~n~~l~--------~---------- 86 (483)
++.+++++..|++.|||.... ..+|..++..||+|+|+++....+ .
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~ 92 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRR 92 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSB
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCc
Confidence 344567778899999984221 357888899999999998531100 0
Q ss_pred --------hh-hC---hhHHHHHHHHhhhhcCCCceEEEEEecccccc
Q 011551 87 --------AA-AD---QSFTDNWVQANISKYYPATKIEAVAVGNEVFA 122 (483)
Q Consensus 87 --------la-~~---~~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~ 122 (483)
.. .+ ...+.+.+++.+..|..+-.|.++-|+||.-.
T Consensus 93 ~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 93 RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 00 00 12344555555555654567999999999866
No 18
>TIGR03356 BGL beta-galactosidase.
Probab=71.62 E-value=11 Score=40.40 Aligned_cols=77 Identities=13% Similarity=0.256 Sum_probs=45.0
Q ss_pred CCCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh--CCCCCCCCCCCccEEEEEecCC-CCCCCCCCCcccc
Q 011551 255 YNDVKVVVTETGWPSVGDENEAGAGAANAAAYNGNLVRRVLS--GSGTPLRPKDPLNVYLFALFNE-NQKPGPTSERNYG 331 (483)
Q Consensus 255 ~~~~~vvVtETGWPS~G~~~~~~as~~Na~~y~~~li~~~~s--~~Gtp~rpg~~~~~yiF~lFDE-~~K~g~~~E~~wG 331 (483)
+++.+|+|||.|+.......+...--+.-..|++.-++.+.. ..|-+. .-+|..++.|- .|.. +.++.||
T Consensus 335 Y~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v-----~GY~~Wsl~Dn~ew~~--gy~~rfG 407 (427)
T TIGR03356 335 YPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDV-----RGYFVWSLLDNFEWAE--GYSKRFG 407 (427)
T ss_pred cCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCE-----EEEEecccccccchhc--ccccccc
Confidence 555689999999975432110001112333455544443332 246554 24778888885 3654 4889999
Q ss_pred ccCCCCC
Q 011551 332 LFYPNEQ 338 (483)
Q Consensus 332 lf~~d~~ 338 (483)
|++.|..
T Consensus 408 l~~VD~~ 414 (427)
T TIGR03356 408 LVHVDYE 414 (427)
T ss_pred eEEECCC
Confidence 9998876
No 19
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=61.63 E-value=1e+02 Score=28.83 Aligned_cols=87 Identities=13% Similarity=0.039 Sum_probs=45.5
Q ss_pred HHHHHhhcCCCeEEEecCcch-hHHhhhChhHH---HHHHHHhhh-hcCCCceEEEEEeccccccCCCCChhhHHHHHHH
Q 011551 63 AVLAALANSDISVVVAFPNEE-LSKAAADQSFT---DNWVQANIS-KYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKN 137 (483)
Q Consensus 63 ~vL~A~~~tgi~v~vGv~n~~-l~~la~~~~~a---~~wv~~~v~-~~~p~~~I~~I~VGNEvl~~~~~~~~~Ll~am~n 137 (483)
.+|+++...||+|+||++.+. --. ..+.+.. ..-|...+. .|.....+.+--+-.|+=... ...+.+.+.
T Consensus 69 ~~L~~A~~~Gmkv~~Gl~~~~~~w~-~~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~ 143 (166)
T PF14488_consen 69 MILDAADKYGMKVFVGLYFDPDYWD-QGDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN----WNAPERFAL 143 (166)
T ss_pred HHHHHHHHcCCEEEEeCCCCchhhh-ccCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCcc----cchHHHHHH
Confidence 578888999999999997431 000 0111111 111222232 343334577777777874432 224556666
Q ss_pred HHHHHHhCCCCCCeEEe
Q 011551 138 VYNSLVKYKLDSNVKVS 154 (483)
Q Consensus 138 v~~aL~~~gl~~~IkVs 154 (483)
+.+.|++..-+.+|-|+
T Consensus 144 l~~~lk~~s~~~Pv~IS 160 (166)
T PF14488_consen 144 LGKYLKQISPGKPVMIS 160 (166)
T ss_pred HHHHHHHhCCCCCeEEe
Confidence 66666654323334333
No 20
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=61.36 E-value=26 Score=26.98 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHhCCCCEEEEecCC-----hHHHHHhhcCCCeEEEecC
Q 011551 37 LPSPEKVVELLKSQRIDRVKTYDTD-----SAVLAALANSDISVVVAFP 80 (483)
Q Consensus 37 ~ps~~~v~~~l~~~~~~~VRiY~~d-----~~vL~A~~~tgi~v~vGv~ 80 (483)
.-+++++++.++.+|++.|=+=|-+ ....+.++..||+|+.|+.
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E 62 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLE 62 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEE
Confidence 3468899999999999999888776 4556666789999999984
No 21
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=59.60 E-value=57 Score=33.10 Aligned_cols=82 Identities=9% Similarity=0.046 Sum_probs=49.9
Q ss_pred hHHHHHhhcCCCeEEEecCcc--------hhHHhhhChhHHHHHHHHhhhhcCCCceEEEEEeccccccCCCCChhh-HH
Q 011551 62 SAVLAALANSDISVVVAFPNE--------ELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPF-LV 132 (483)
Q Consensus 62 ~~vL~A~~~tgi~v~vGv~n~--------~l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~-Ll 132 (483)
+.++.+++..++||++.|.+. ....+.+++..-... .++|..+...-.+.+|-+-=|.+.. +... ++
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~f-i~~iv~~l~~~~~DGidiDwE~~~~---~d~~~~~ 123 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRL-INNILALAKKYGYDGVNIDFENVPP---EDREAYT 123 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHH-HHHHHHHHHHhCCCcEEEecccCCH---HHHHHHH
Confidence 678888888899999888542 234455554433333 3334333222235566665455432 2233 89
Q ss_pred HHHHHHHHHHHhCCC
Q 011551 133 PAMKNVYNSLVKYKL 147 (483)
Q Consensus 133 ~am~nv~~aL~~~gl 147 (483)
..|+.+|.+|.+.|+
T Consensus 124 ~fl~~lr~~l~~~~~ 138 (313)
T cd02874 124 QFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHhhhcCc
Confidence 999999999987664
No 22
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=59.60 E-value=35 Score=37.32 Aligned_cols=255 Identities=17% Similarity=0.210 Sum_probs=129.9
Q ss_pred eeEEecCCCCC---CCC--HHHHHHHHHh---CCCCEEEEecCC--------------h------HHHHHhhcCCCeEEE
Q 011551 26 VGINYGRVANN---LPS--PEKVVELLKS---QRIDRVKTYDTD--------------S------AVLAALANSDISVVV 77 (483)
Q Consensus 26 ~GvnYg~~~~n---~ps--~~~v~~~l~~---~~~~~VRiY~~d--------------~------~vL~A~~~tgi~v~v 77 (483)
+|+||=++-.| .|- -.++.++|+. .|++.+|+|-.| + -.|.-+...+|||++
T Consensus 6 Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~fiLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~lkvli 85 (587)
T COG3934 6 LGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLFILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLI 85 (587)
T ss_pred eccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEEEecCcchhhhhceecccccHHHHHHHhhhcccCcceEEE
Confidence 56777665433 222 2244445543 579999999433 1 123334568899766
Q ss_pred ecC---------cchh--------HHhhhCh---hHHHHHHHHhhhhcCCCceEEEEEeccccccCCCCChhhHHHHHHH
Q 011551 78 AFP---------NEEL--------SKAAADQ---SFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKN 137 (483)
Q Consensus 78 Gv~---------n~~l--------~~la~~~---~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~Ll~am~n 137 (483)
..= |--| ....-++ ..-...|..-|.+|--+..|-+-+.-||.+.+.+.+.-.++-..+.
T Consensus 86 tlivg~~hmgg~Nw~Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~e 165 (587)
T COG3934 86 TLIVGLKHMGGTNWRIPWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGE 165 (587)
T ss_pred EEeecccccCcceeEeecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHH
Confidence 441 1111 1111111 1224567777777765666888888899776543333337777788
Q ss_pred HHHHHHhCCCCCCeEEecccccccccccCCCCCcccccccchhhhhhHHHHHHhcCCcceeccCCccccccCCCcccccc
Q 011551 138 VYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDY 217 (483)
Q Consensus 138 v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~~~~i~ldy 217 (483)
+.+.++..+-+.-|.|+-+.+. |.. |-|-.+.| .+||= .-++||+|... + -....+
T Consensus 166 my~yiK~ldd~hlvsvGD~~sp--~~~-~~pyN~r~-----------~vDya-------~~hLY~hyd~s--l-~~r~s~ 221 (587)
T COG3934 166 MYAYIKWLDDGHLVSVGDPASP--WPQ-YAPYNARF-----------YVDYA-------ANHLYRHYDTS--L-VSRVST 221 (587)
T ss_pred HHHHhhccCCCCeeecCCcCCc--ccc-cCCcccce-----------eeccc-------cchhhhhccCC--h-hheeee
Confidence 8888877776554555544332 332 22323333 23333 77899966542 2 011111
Q ss_pred ccccCCCCcccCCCCccccchHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhC
Q 011551 218 ALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGDENEAGAGAANAAAYNGNLVRRVLSG 297 (483)
Q Consensus 218 Alf~~~~~~~d~~~g~~Y~n~fda~~dav~~A~~k~g~~~~~vvVtETGWPS~G~~~~~~as~~Na~~y~~~li~~~~s~ 297 (483)
..+. ..+|-- .-+ +-++|+.-|-|-|++=... |.+.|.-.+. .+...
T Consensus 222 ~yg~-------------------~~l~i~----~~~--g~~pV~leefGfsta~g~e-------~s~ayfiw~~-lal~~ 268 (587)
T COG3934 222 VYGK-------------------PYLDIP----TIM--GWQPVNLEEFGFSTAFGQE-------NSPAYFIWIR-LALDT 268 (587)
T ss_pred eecc-------------------hhhccc----hhc--ccceeeccccCCccccccc-------ccchhhhhhh-hHHhh
Confidence 1111 111110 111 2489999999999974432 2222222111 12111
Q ss_pred CCCCCCCCCCccEEEEEecCCCC--CCC--CCCCccccccCCCCCeeeee
Q 011551 298 SGTPLRPKDPLNVYLFALFNENQ--KPG--PTSERNYGLFYPNEQTVYDS 343 (483)
Q Consensus 298 ~Gtp~rpg~~~~~yiF~lFDE~~--K~g--~~~E~~wGlf~~d~~~ky~l 343 (483)
.| .+.-..-|+-|-+-- .++ ..-|-.|||.+.|+.+|+..
T Consensus 269 gg------dGaLiwclsdf~~gsdd~ey~w~p~el~fgiIradgpek~~a 312 (587)
T COG3934 269 GG------DGALIWCLSDFHLGSDDSEYTWGPMELEFGIIRADGPEKIDA 312 (587)
T ss_pred cC------CceEEEEecCCccCCCCCCCccccccceeeeecCCCchhhhH
Confidence 11 122244444443211 111 13477899999999999864
No 23
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=57.26 E-value=42 Score=34.79 Aligned_cols=76 Identities=12% Similarity=0.156 Sum_probs=41.7
Q ss_pred cCCCeEEEecC--cc---hhHHhhhChhHHHHHHHHhhhhcCCCceEEEEEeccccccC-C-CCChhh-HHHHHHHHHHH
Q 011551 70 NSDISVVVAFP--NE---ELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFAD-P-KNTTPF-LVPAMKNVYNS 141 (483)
Q Consensus 70 ~tgi~v~vGv~--n~---~l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~-~-~~~~~~-Ll~am~nv~~a 141 (483)
+.++||++.|. +. ....++++.+.....++. |..+...-.+.+|-+==|-... + ...... ++..|+.+|++
T Consensus 68 ~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~-iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~ 146 (362)
T cd02872 68 NPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKS-AIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREA 146 (362)
T ss_pred CCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHH-HHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHH
Confidence 46899998883 21 345566665544444433 3333222234555553343221 1 112233 89999999999
Q ss_pred HHhCC
Q 011551 142 LVKYK 146 (483)
Q Consensus 142 L~~~g 146 (483)
|++.+
T Consensus 147 l~~~~ 151 (362)
T cd02872 147 FEPEA 151 (362)
T ss_pred HHhhC
Confidence 98873
No 24
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=57.10 E-value=13 Score=34.75 Aligned_cols=37 Identities=14% Similarity=0.250 Sum_probs=27.4
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHhhcCCCeEEEec
Q 011551 43 VVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAF 79 (483)
Q Consensus 43 v~~~l~~~~~~~VRiY~~d~~vL~A~~~tgi~v~vGv 79 (483)
-+|.|+..|+++||+...+|.-+.++.+.||+|.=-|
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~v 167 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERV 167 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEe
Confidence 4689999999999999999999999999999997544
No 25
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.77 E-value=47 Score=35.11 Aligned_cols=60 Identities=18% Similarity=0.283 Sum_probs=42.1
Q ss_pred ccchHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHhC
Q 011551 235 YTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGDENE---AGAGAANAAAYNGNLVRRVLSG 297 (483)
Q Consensus 235 Y~n~fda~~dav~~A~~k~g~~~~~vvVtETGWPS~G~~~~---~~as~~Na~~y~~~li~~~~s~ 297 (483)
|.|-|++-+-.........|.+.++|+.+ |||.|..-+ .-.|-+-++.-+.++++.+...
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 66777765554444456678888999988 999997632 2366666677778888888753
No 26
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=51.80 E-value=1.2e+02 Score=30.57 Aligned_cols=140 Identities=17% Similarity=0.182 Sum_probs=68.4
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEecCC-------hHHHH---HhhcCCCeEEEecCcchhHHhhhChhHHHHHHHHhhhhc
Q 011551 36 NLPSPEKVVELLKSQRIDRVKTYDTD-------SAVLA---ALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKY 105 (483)
Q Consensus 36 n~ps~~~v~~~l~~~~~~~VRiY~~d-------~~vL~---A~~~tgi~v~vGv~n~~l~~la~~~~~a~~wv~~~v~~~ 105 (483)
+.+++.++.+.|+..|+++|-+-... ..+++ .++..--++.+|-|-=.......+.+.. .-+.+.+..-
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~-~~va~aL~~~ 134 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDY-EAVAEALAEE 134 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHH-HHHHHHHHCC
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHH-HHHHHHHHHh
Confidence 57999999999999999999998775 23443 3444445889998730000000011111 1123333333
Q ss_pred CC----CceEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCcccccccchhh
Q 011551 106 YP----ATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPA 181 (483)
Q Consensus 106 ~p----~~~I~~I~VGNEvl~~~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~ 181 (483)
+| +..+..+-=||+- ... ..-..++..|++.++.+ |-|+|.+. +| .
T Consensus 135 ~~~~~~~~a~vlmGHGt~h-------~an--~~Y~~l~~~l~~~~~~~-v~vgtvEG-------~P-------------~ 184 (262)
T PF06180_consen 135 FPKKRKDEAVVLMGHGTPH-------PAN--AAYSALQAMLKKHGYPN-VFVGTVEG-------YP-------------S 184 (262)
T ss_dssp S-TT-TTEEEEEEE---SC-------HHH--HHHHHHHHHHHCCT-TT-EEEEETTS-------SS-------------B
T ss_pred ccccCCCCEEEEEeCCCCC-------Ccc--HHHHHHHHHHHhCCCCe-EEEEEeCC-------CC-------------C
Confidence 33 3434444444432 222 23344567788887764 88999863 32 3
Q ss_pred hhhHHHHHHhcCCcceeccCCccccc
Q 011551 182 LKPMLEFLRKTSSYLMVNAYPFFAYS 207 (483)
Q Consensus 182 l~~~ldfL~~t~sp~~vNiyPyf~~~ 207 (483)
+..++..|.+.+ +=-|.+.||.--.
T Consensus 185 ~~~vi~~L~~~g-~k~V~L~PlMlVA 209 (262)
T PF06180_consen 185 LEDVIARLKKKG-IKKVHLIPLMLVA 209 (262)
T ss_dssp HHHHHHHHHHHT--SEEEEEEESSS-
T ss_pred HHHHHHHHHhcC-CCeEEEEeccccc
Confidence 556677776544 2258888988543
No 27
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=51.53 E-value=53 Score=35.82 Aligned_cols=75 Identities=19% Similarity=0.342 Sum_probs=44.4
Q ss_pred CCC-ceEEEEeccCCCCCCCC--CCC---CCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCCCCC
Q 011551 255 YND-VKVVVTETGWPSVGDEN--EAG---AGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGPTSE 327 (483)
Q Consensus 255 ~~~-~~vvVtETGWPS~G~~~--~~~---as~~Na~~y~~~li~~~~s~~Gtp~rpg~~~~~yiF~lFDE-~~K~g~~~E 327 (483)
+++ .+|+|||.|+....... +.. -=++--+.+++.+.+.+. .|.+.| -+|.-++.|- .|..| .+
T Consensus 365 Y~~~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~--dGv~v~-----GY~~WSl~DnfEW~~G--y~ 435 (469)
T PRK13511 365 YPNYKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAIS--DGANVK-----GYFIWSLMDVFSWSNG--YE 435 (469)
T ss_pred cCCCCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHH--cCCCEE-----EEeecccccccchhcC--cc
Confidence 455 57999999997543211 000 112223334444444442 466543 4788888885 36554 89
Q ss_pred ccccccCCCCC
Q 011551 328 RNYGLFYPNEQ 338 (483)
Q Consensus 328 ~~wGlf~~d~~ 338 (483)
+.|||++.|.+
T Consensus 436 ~RfGl~~VD~~ 446 (469)
T PRK13511 436 KRYGLFYVDFE 446 (469)
T ss_pred CccceEEECCC
Confidence 99999998875
No 28
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=49.99 E-value=24 Score=33.67 Aligned_cols=33 Identities=15% Similarity=0.403 Sum_probs=30.5
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCCeEE
Q 011551 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVV 76 (483)
Q Consensus 44 ~~~l~~~~~~~VRiY~~d~~vL~A~~~tgi~v~ 76 (483)
.|.|+..|+++||+....+.-+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999998888889999999987
No 29
>PLN03030 cationic peroxidase; Provisional
Probab=49.81 E-value=13 Score=38.73 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHHhhhcCCCceeEEecCCCCCCCCHHHHHH-----HHHh---CCCCEEEEecCC
Q 011551 6 AFSSFFFFFLVTFAFADTGKVGINYGRVANNLPSPEKVVE-----LLKS---QRIDRVKTYDTD 61 (483)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~GvnYg~~~~n~ps~~~v~~-----~l~~---~~~~~VRiY~~d 61 (483)
+|...+|+||+++++.....-+..|+=|...||..++||+ .++. ..-..+|++--|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHD 66 (324)
T PLN03030 3 RFIVILFFLLAMMATTLVQGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHD 66 (324)
T ss_pred eehhHHHHHHHHHhcccchhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhh
Confidence 4555666666666555555556888889999999999875 2222 124566766444
No 30
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=49.48 E-value=25 Score=33.80 Aligned_cols=33 Identities=21% Similarity=0.463 Sum_probs=30.6
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCCeEE
Q 011551 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVV 76 (483)
Q Consensus 44 ~~~l~~~~~~~VRiY~~d~~vL~A~~~tgi~v~ 76 (483)
+|.|+..|+++||+....+.-+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999998888889999999997
No 31
>PLN03059 beta-galactosidase; Provisional
Probab=46.13 E-value=3.7e+02 Score=31.80 Aligned_cols=153 Identities=15% Similarity=0.139 Sum_probs=88.1
Q ss_pred hhhhhhHHHHHHHHHhhhcCCCceeEEecCCC----------------CCCCCHHHHH---HHHHhCCCCEEEEecC---
Q 011551 3 TLAAFSSFFFFFLVTFAFADTGKVGINYGRVA----------------NNLPSPEKVV---ELLKSQRIDRVKTYDT--- 60 (483)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~GvnYg~~~----------------~n~ps~~~v~---~~l~~~~~~~VRiY~~--- 60 (483)
+|..|.+++||+||...........|.|..+. ---.+|+... +.+|..|++.|-+|-.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~ 84 (840)
T PLN03059 5 SLVVFLLLFLLFLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNG 84 (840)
T ss_pred ceehhhHHHHHHHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccc
Confidence 45555555566666655544444578887531 1123456554 4556789999999832
Q ss_pred ----------C-----hHHHHHhhcCCCeEEEec-------------Ccch--hHH--hh-hCh---hHHHHHHHHhhhh
Q 011551 61 ----------D-----SAVLAALANSDISVVVAF-------------PNEE--LSK--AA-ADQ---SFTDNWVQANISK 104 (483)
Q Consensus 61 ----------d-----~~vL~A~~~tgi~v~vGv-------------~n~~--l~~--la-~~~---~~a~~wv~~~v~~ 104 (483)
+ ..-|+.+++.||-|+|=. |.-. .+. +- .++ ++.++|+..-+..
T Consensus 85 HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~ 164 (840)
T PLN03059 85 HEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDM 164 (840)
T ss_pred cCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 1 245678889999999843 1100 011 11 111 2455666654322
Q ss_pred c------C-CCceEEEEEeccccccCCCCCh-hhHHHHHHHHHHHHHhCCCCCCeEEecccc
Q 011551 105 Y------Y-PATKIEAVAVGNEVFADPKNTT-PFLVPAMKNVYNSLVKYKLDSNVKVSSPIA 158 (483)
Q Consensus 105 ~------~-p~~~I~~I~VGNEvl~~~~~~~-~~Ll~am~nv~~aL~~~gl~~~IkVsT~~~ 158 (483)
. + .+-.|..+=|-||-=.- +... ..--.+|+.+++.++++|++ |+.-|.+.
T Consensus 165 l~~~~l~~~~GGPIImvQIENEYGs~-~~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl~t~dg 223 (840)
T PLN03059 165 MKSEKLFEPQGGPIILSQIENEYGPV-EWEIGAPGKAYTKWAADMAVKLGTG--VPWVMCKQ 223 (840)
T ss_pred HhhcceeecCCCcEEEEEecccccce-ecccCcchHHHHHHHHHHHHHcCCC--cceEECCC
Confidence 1 1 23578999999995221 0011 11467999999999999985 66655543
No 32
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=45.69 E-value=1.1e+02 Score=36.90 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=60.0
Q ss_pred ceeEEecCCCC---CCCCHHHHH---HHHHhCCCCEEEEec--CChHHHHHhhcCCCeEEEecCcch-----hHHhhhCh
Q 011551 25 KVGINYGRVAN---NLPSPEKVV---ELLKSQRIDRVKTYD--TDSAVLAALANSDISVVVAFPNEE-----LSKAAADQ 91 (483)
Q Consensus 25 ~~GvnYg~~~~---n~ps~~~v~---~~l~~~~~~~VRiY~--~d~~vL~A~~~tgi~v~vGv~n~~-----l~~la~~~ 91 (483)
..|+|+-.... ...+++++. +++|..|++.||+-. .++..+..+...||=|+--++.+. ...+..++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 35888754322 235666664 466789999999943 357899999999999886653210 00111222
Q ss_pred ---hHHHHHHHHhhhhcCCCceEEEEEeccccc
Q 011551 92 ---SFTDNWVQANISKYYPATKIEAVAVGNEVF 121 (483)
Q Consensus 92 ---~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl 121 (483)
++..+.+++.|....-.-.|..=.+|||.-
T Consensus 432 ~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 123334455566654445688889999964
No 33
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=44.65 E-value=52 Score=32.40 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=45.5
Q ss_pred HHHHHhhcCCCeEEEecCcch---hHHhhhChhHHHHHHHHhhhhcCCCceEEEEEeccccccCCCCChhhHHHHHHHHH
Q 011551 63 AVLAALANSDISVVVAFPNEE---LSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVY 139 (483)
Q Consensus 63 ~vL~A~~~tgi~v~vGv~n~~---l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~Ll~am~nv~ 139 (483)
..+++++..|+||++.|.+.. ...+..+++..++++++ |..+...-.+.+|-+==|-... ....++..|+++|
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~-lv~~~~~~~~DGIdiDwE~~~~---~~~~~~~fv~~Lr 125 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDK-IINYVVSYNLDGIDVDLEGPDV---TFGDYLVFIRALY 125 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHH-HHHHHHHhCCCceeEEeeccCc---cHhHHHHHHHHHH
Confidence 456677778999998885431 22344455544444433 3322222234555554444322 1123788899999
Q ss_pred HHHHhCCC
Q 011551 140 NSLVKYKL 147 (483)
Q Consensus 140 ~aL~~~gl 147 (483)
++|++.|+
T Consensus 126 ~~l~~~~~ 133 (253)
T cd06545 126 AALKKEGK 133 (253)
T ss_pred HHHhhcCc
Confidence 99987664
No 34
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=43.96 E-value=56 Score=31.44 Aligned_cols=118 Identities=17% Similarity=0.253 Sum_probs=67.0
Q ss_pred HHHHHHHHhhhhcCCCceEEEEEeccccccCCCCChhhHHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCcc
Q 011551 93 FTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGS 172 (483)
Q Consensus 93 ~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~ 172 (483)
...+|+...+..+ +...+....+= ....-.+++.+.+.+...|+.| |++.+.....
T Consensus 56 ~~n~~~~~~~~~~-~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~G-v~l~~~~~~~------------ 111 (273)
T PF04909_consen 56 GFNDWLVELAAKH-PDRFIGFAAIP----------PPDPEDAVEELERALQELGFRG-VKLHPDLGGF------------ 111 (273)
T ss_dssp HHHHHHHHHHHHS-TTTEEEEEEET----------TTSHHHHHHHHHHHHHTTTESE-EEEESSETTC------------
T ss_pred HHHHHHHHHHHHc-CCCEEEEEEec----------CCCchhHHHHHHHhccccceee-eEecCCCCcc------------
Confidence 3456776666665 33333322221 0013468888889998999887 8877643211
Q ss_pred cccccchhhhh-hHHHHHHhcCCcceeccC-CccccccCCCccccccccccCCCCcccCCCCccccchHHHHHHHHHHHH
Q 011551 173 FKSDLIEPALK-PMLEFLRKTSSYLMVNAY-PFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAM 250 (483)
Q Consensus 173 F~~~~~~~~l~-~~ldfL~~t~sp~~vNiy-Pyf~~~~~~~~i~ldyAlf~~~~~~~d~~~g~~Y~n~fda~~dav~~A~ 250 (483)
..+ ++.+. ++++.+.+.+-|+.+++- +.+... ..-..+...+...+
T Consensus 112 -~~~--~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~-----------------------------~~~~~~~~~~~~~~ 159 (273)
T PF04909_consen 112 -DPD--DPRLDDPIFEAAEELGLPVLIHTGMTGFPDA-----------------------------PSDPADPEELEELL 159 (273)
T ss_dssp -CTT--SGHCHHHHHHHHHHHT-EEEEEESHTHHHHH-----------------------------HHHHHHHHHHTTHH
T ss_pred -ccc--cHHHHHHHHHHHHhhccceeeeccccchhhh-----------------------------hHHHHHHHHHHHHH
Confidence 111 12344 899999999988887753 111100 01112222333334
Q ss_pred HhcCCCCceEEEEeccCC
Q 011551 251 SAISYNDVKVVVTETGWP 268 (483)
Q Consensus 251 ~k~g~~~~~vvVtETGWP 268 (483)
++ +|+++|++.+.|+|
T Consensus 160 ~~--~P~l~ii~~H~G~~ 175 (273)
T PF04909_consen 160 ER--FPDLRIILAHLGGP 175 (273)
T ss_dssp HH--STTSEEEESGGGTT
T ss_pred HH--hcCCeEEEecCccc
Confidence 44 79999999999999
No 35
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=43.19 E-value=1.1e+02 Score=32.67 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhCCC
Q 011551 131 LVPAMKNVYNSLVKYKL 147 (483)
Q Consensus 131 Ll~am~nv~~aL~~~gl 147 (483)
++..|+.+|++|++.++
T Consensus 171 f~~Ll~elr~~l~~~~~ 187 (413)
T cd02873 171 FTALVRELKNALRPDGL 187 (413)
T ss_pred HHHHHHHHHHHhcccCc
Confidence 88899999999987765
No 36
>PLN02998 beta-glucosidase
Probab=41.40 E-value=74 Score=35.06 Aligned_cols=75 Identities=17% Similarity=0.325 Sum_probs=45.2
Q ss_pred CCCceEEEEeccCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCCCCCccccc
Q 011551 255 YNDVKVVVTETGWPSVGDEN-EAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGPTSERNYGL 332 (483)
Q Consensus 255 ~~~~~vvVtETGWPS~G~~~-~~~as~~Na~~y~~~li~~~~s~~Gtp~rpg~~~~~yiF~lFDE-~~K~g~~~E~~wGl 332 (483)
+++.+|+|||-|+....+.. ...-=++--+.+++.+.+.+. .|.+. .-+|.-++.|- .|..| .++.|||
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~--dGv~V-----~GY~~WSl~DnfEW~~G--y~~RfGL 460 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLR--KGSDV-----KGYFQWSLMDVFELFGG--YERSFGL 460 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCE-----EEEeeccchhhhchhcc--ccCccce
Confidence 55558999999997653110 001122333444554555543 46554 23777788874 36554 8999999
Q ss_pred cCCCCC
Q 011551 333 FYPNEQ 338 (483)
Q Consensus 333 f~~d~~ 338 (483)
++.|..
T Consensus 461 v~VD~~ 466 (497)
T PLN02998 461 LYVDFK 466 (497)
T ss_pred EEECCC
Confidence 998764
No 37
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=40.82 E-value=32 Score=36.45 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=29.5
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCCeEE
Q 011551 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVV 76 (483)
Q Consensus 44 ~~~l~~~~~~~VRiY~~d~~vL~A~~~tgi~v~ 76 (483)
.|+|+..|+++|||. .+|.=+.++.+.||+|.
T Consensus 331 AqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 331 AQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 689999999999999 78888899999999997
No 38
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=40.75 E-value=85 Score=30.78 Aligned_cols=55 Identities=16% Similarity=0.290 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHh
Q 011551 239 FDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGDENE---AGAGAANAAAYNGNLVRRVLS 296 (483)
Q Consensus 239 fda~~dav~~A~~k~g~~~~~vvVtETGWPS~G~~~~---~~as~~Na~~y~~~li~~~~s 296 (483)
|+..+.....-...+++++..|+. .|||.|...+ ...+...++..+..+++.+..
T Consensus 31 f~~a~~r~aql~~~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 31 FEDALRRAAQLAHDLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 443333332233456777766655 4999997632 224555556666777777754
No 39
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=40.09 E-value=42 Score=32.06 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=30.3
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCCeEE
Q 011551 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVV 76 (483)
Q Consensus 44 ~~~l~~~~~~~VRiY~~d~~vL~A~~~tgi~v~ 76 (483)
.|.|+..|+.++|+....+.-+.++.+.||+|.
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv 165 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVV 165 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999988878889999999998
No 40
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=39.91 E-value=86 Score=32.61 Aligned_cols=80 Identities=11% Similarity=0.190 Sum_probs=33.3
Q ss_pred HHHHhhcCCCeEEEecCcch-hHHhhhChhHHHHHHHHhhhhcC-----CCceEEEEEeccccccCC---CCChhhHHHH
Q 011551 64 VLAALANSDISVVVAFPNEE-LSKAAADQSFTDNWVQANISKYY-----PATKIEAVAVGNEVFADP---KNTTPFLVPA 134 (483)
Q Consensus 64 vL~A~~~tgi~v~vGv~n~~-l~~la~~~~~a~~wv~~~v~~~~-----p~~~I~~I~VGNEvl~~~---~~~~~~Ll~a 134 (483)
+.+=+..+|++|+.|+.--. -..+ .+....-.|=-+|.+.++ ..=+|.+-=.|||.-..+ ..+..++..-
T Consensus 114 l~~F~~~tG~~liFgLNAL~g~~~~-~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD 192 (319)
T PF03662_consen 114 LNNFAQKTGLKLIFGLNALLGRRQL-ADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKD 192 (319)
T ss_dssp HHHHHHHHT-EEEEEE-TTTS-HHH-HHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHH
T ss_pred HHHHHHHhCCEEEEEecccCCCCCC-CCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHH
Confidence 33444589999999995200 0001 111234567777755432 123577777899975432 1222337777
Q ss_pred HHHHHHHHHh
Q 011551 135 MKNVYNSLVK 144 (483)
Q Consensus 135 m~nv~~aL~~ 144 (483)
...+|+.|++
T Consensus 193 ~~~Lr~il~~ 202 (319)
T PF03662_consen 193 FIQLRKILNE 202 (319)
T ss_dssp H---HHHHHH
T ss_pred HHHHHHHHHH
Confidence 7778887765
No 41
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=39.48 E-value=43 Score=31.38 Aligned_cols=84 Identities=13% Similarity=0.197 Sum_probs=44.8
Q ss_pred HHHHHhhcC--CCeEEEecCcchhH---HhhhChhHHHHHHHHhhhhcCCCceEEEEEeccccccCCCCChhh-HHHHHH
Q 011551 63 AVLAALANS--DISVVVAFPNEELS---KAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPF-LVPAMK 136 (483)
Q Consensus 63 ~vL~A~~~t--gi~v~vGv~n~~l~---~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~-Ll~am~ 136 (483)
.-++.++.. |++|++.|...... .++.+.+..++.+ +++..+...-++.+|-+==|-....+..... ++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~-~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFA-NSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHH-HHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 345556654 99999988642211 2344444333332 2333333223455665543443321111234 999999
Q ss_pred HHHHHHHhCCC
Q 011551 137 NVYNSLVKYKL 147 (483)
Q Consensus 137 nv~~aL~~~gl 147 (483)
.+|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999977654
No 42
>PLN02814 beta-glucosidase
Probab=39.21 E-value=86 Score=34.63 Aligned_cols=75 Identities=20% Similarity=0.443 Sum_probs=44.6
Q ss_pred CCCceEEEEeccCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCCCCCccccc
Q 011551 255 YNDVKVVVTETGWPSVGDEN-EAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGPTSERNYGL 332 (483)
Q Consensus 255 ~~~~~vvVtETGWPS~G~~~-~~~as~~Na~~y~~~li~~~~s~~Gtp~rpg~~~~~yiF~lFDE-~~K~g~~~E~~wGl 332 (483)
+++.+|+|||-|+....+.. ...-=++--+.+++.+.+.+. .|.+.| -+|.-++.|- .|..| .++.|||
T Consensus 385 Y~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~--dGv~V~-----GY~~WSllDnfEW~~G--y~~RfGL 455 (504)
T PLN02814 385 YNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIK--NGSDTR-----GYFVWSMIDLYELLGG--YTTSFGM 455 (504)
T ss_pred cCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCEE-----EEeeccchhhhchhcc--ccCccce
Confidence 55668999999997542110 001112333344444444443 466543 3777888874 36544 8999999
Q ss_pred cCCCCC
Q 011551 333 FYPNEQ 338 (483)
Q Consensus 333 f~~d~~ 338 (483)
++.|..
T Consensus 456 vyVD~~ 461 (504)
T PLN02814 456 YYVNFS 461 (504)
T ss_pred EEECCC
Confidence 998765
No 43
>PRK09989 hypothetical protein; Provisional
Probab=38.69 E-value=3.8e+02 Score=26.11 Aligned_cols=51 Identities=10% Similarity=0.137 Sum_probs=39.0
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEe---cCC-hHHHHHhhcCCCeEEE
Q 011551 26 VGINYGRVANNLPSPEKVVELLKSQRIDRVKTY---DTD-SAVLAALANSDISVVV 77 (483)
Q Consensus 26 ~GvnYg~~~~n~ps~~~v~~~l~~~~~~~VRiY---~~d-~~vL~A~~~tgi~v~v 77 (483)
..+|.+....++ +-.+.++.++..||+.|-+. +.+ .++.+.++.+||+|..
T Consensus 4 ~~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 4 FAANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred eeeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 467777766665 56788999999999999984 333 4566778899999875
No 44
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=37.54 E-value=4.8e+02 Score=27.62 Aligned_cols=140 Identities=11% Similarity=0.186 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHH---hCCCCEEEEecCC--------------hHHHHHhhcC-CCe-EEEecCcchhHHhhhChhHHHH
Q 011551 36 NLPSPEKVVELLK---SQRIDRVKTYDTD--------------SAVLAALANS-DIS-VVVAFPNEELSKAAADQSFTDN 96 (483)
Q Consensus 36 n~ps~~~v~~~l~---~~~~~~VRiY~~d--------------~~vL~A~~~t-gi~-v~vGv~n~~l~~la~~~~~a~~ 96 (483)
..-++++|++.++ ..|++.|.+.|.| .++|+++... ++. +-++--+ ...+ +. .-.+
T Consensus 165 r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~--p~~~--~~-ell~ 239 (414)
T TIGR01579 165 RSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSID--PEDI--DE-ELLE 239 (414)
T ss_pred ccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCC--hhhC--CH-HHHH
Confidence 3567889876554 4689999875422 2566666643 442 4443211 1111 11 1112
Q ss_pred HHHHhhhhcCCCceEEEEEeccccccC-------CCCChhhHHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCC
Q 011551 97 WVQANISKYYPATKIEAVAVGNEVFAD-------PKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPS 169 (483)
Q Consensus 97 wv~~~v~~~~p~~~I~~I~VGNEvl~~-------~~~~~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS 169 (483)
.++++ +. ....|.+|=|-... ...+....+.+++.+|+.. .| |.+++..-++ +|
T Consensus 240 ~m~~~-----~~-~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~--~g----i~i~~~~IvG-----~P-- 300 (414)
T TIGR01579 240 AIASE-----KR-LCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVR--PD----YAFGTDIIVG-----FP-- 300 (414)
T ss_pred HHHhc-----Cc-cCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhC--CC----CeeeeeEEEE-----CC--
Confidence 22221 10 12345555444322 1223333777777777642 22 4455443221 33
Q ss_pred CcccccccchhhhhhHHHHHHhcCCcceeccCCcccc
Q 011551 170 SGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAY 206 (483)
Q Consensus 170 ~g~F~~~~~~~~l~~~ldfL~~t~sp~~vNiyPyf~~ 206 (483)
|. .+..+...++|+.+.+ +-.+++|||--+
T Consensus 301 -gE-----T~ed~~~tl~~i~~~~-~~~~~~~~~sp~ 330 (414)
T TIGR01579 301 -GE-----SEEDFQETLRMVKEIE-FSHLHIFPYSAR 330 (414)
T ss_pred -CC-----CHHHHHHHHHHHHhCC-CCEEEeeecCCC
Confidence 11 1246788999997765 456777776544
No 45
>PLN02849 beta-glucosidase
Probab=37.27 E-value=1.1e+02 Score=33.84 Aligned_cols=75 Identities=21% Similarity=0.333 Sum_probs=44.9
Q ss_pred CCCceEEEEeccCCCCCCCCCC---CCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCCCCCccc
Q 011551 255 YNDVKVVVTETGWPSVGDENEA---GAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGPTSERNY 330 (483)
Q Consensus 255 ~~~~~vvVtETGWPS~G~~~~~---~as~~Na~~y~~~li~~~~s~~Gtp~rpg~~~~~yiF~lFDE-~~K~g~~~E~~w 330 (483)
+++.+|+|||-|++......+. .-=++--+.+++.+.+.+. .|.+.+ -+|..++.|- .|.. +.++.|
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~--dGv~V~-----GY~~WSl~DnfEW~~--Gy~~Rf 453 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVR--NGSDTR-----GYFVWSFMDLYELLK--GYEFSF 453 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCEE-----EEeeccchhhhchhc--cccCcc
Confidence 5556899999999865421110 0112333344444444443 465542 3777888875 3654 489999
Q ss_pred cccCCCCC
Q 011551 331 GLFYPNEQ 338 (483)
Q Consensus 331 Glf~~d~~ 338 (483)
||++.|..
T Consensus 454 GLi~VD~~ 461 (503)
T PLN02849 454 GLYSVNFS 461 (503)
T ss_pred ceEEECCC
Confidence 99998765
No 46
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=36.45 E-value=42 Score=35.58 Aligned_cols=32 Identities=6% Similarity=0.299 Sum_probs=29.9
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCCeEE
Q 011551 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVV 76 (483)
Q Consensus 44 ~~~l~~~~~~~VRiY~~d~~vL~A~~~tgi~v~ 76 (483)
.|+|+.+|+++||+.. +|.=+.+|.+.||+|.
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~ 359 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVT 359 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEE
Confidence 6899999999999998 8988999999999997
No 47
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=36.42 E-value=76 Score=35.12 Aligned_cols=75 Identities=15% Similarity=0.338 Sum_probs=51.2
Q ss_pred CCCCceEEEEeccCCCCCCCC---C----CCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCC-CCCCCC
Q 011551 254 SYNDVKVVVTETGWPSVGDEN---E----AGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNEN-QKPGPT 325 (483)
Q Consensus 254 g~~~~~vvVtETGWPS~G~~~---~----~~as~~Na~~y~~~li~~~~s~~Gtp~rpg~~~~~yiF~lFDE~-~K~g~~ 325 (483)
.|++.+|.|+|-|-+...+.. + ...=++..+.|++.+.+.+.. .|.- ..-+|..+|.|-- |..|
T Consensus 404 ~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgvn-----v~GYf~WSLmDnfEw~~G-- 475 (524)
T KOG0626|consen 404 KYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGVN-----VKGYFVWSLLDNFEWLDG-- 475 (524)
T ss_pred hcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCCc-----eeeEEEeEcccchhhhcC--
Confidence 488999999999988865432 1 123456667777777776652 3332 2358999999853 7664
Q ss_pred CCccccccCCC
Q 011551 326 SERNYGLFYPN 336 (483)
Q Consensus 326 ~E~~wGlf~~d 336 (483)
..-.|||++.|
T Consensus 476 y~~RFGlyyVD 486 (524)
T KOG0626|consen 476 YKVRFGLYYVD 486 (524)
T ss_pred cccccccEEEe
Confidence 66889999864
No 48
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=34.16 E-value=80 Score=34.57 Aligned_cols=75 Identities=15% Similarity=0.364 Sum_probs=42.7
Q ss_pred ceEEEEeccCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHh---CCCCCCCCCCCccEEEEEecCC-CCCCCCCCCccccc
Q 011551 258 VKVVVTETGWPSVGDENEAG-AGAANAAAYNGNLVRRVLS---GSGTPLRPKDPLNVYLFALFNE-NQKPGPTSERNYGL 332 (483)
Q Consensus 258 ~~vvVtETGWPS~G~~~~~~-as~~Na~~y~~~li~~~~s---~~Gtp~rpg~~~~~yiF~lFDE-~~K~g~~~E~~wGl 332 (483)
+||+|||-|..........+ -.-+.-..|++.-++.+.. ..|.+.+ -+|.-++.|- .|..| ..++.|||
T Consensus 368 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~-----GY~~WSl~Dn~Ew~~G-~y~~RfGl 441 (476)
T PRK09589 368 LPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLM-----GYTPWGCIDLVSAGTG-EMKKRYGF 441 (476)
T ss_pred CCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeE-----EEeeccccccccccCC-ccccceee
Confidence 58999999997543211111 1112223344444433321 2466543 4788888885 36543 36889999
Q ss_pred cCCCCC
Q 011551 333 FYPNEQ 338 (483)
Q Consensus 333 f~~d~~ 338 (483)
++.|..
T Consensus 442 v~VD~~ 447 (476)
T PRK09589 442 IYVDKD 447 (476)
T ss_pred EEEcCC
Confidence 998765
No 49
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=33.88 E-value=63 Score=35.39 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=43.7
Q ss_pred ceEEEEeccCCCCCCCCCCC-----CCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCCCCCcccc
Q 011551 258 VKVVVTETGWPSVGDENEAG-----AGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGPTSERNYG 331 (483)
Q Consensus 258 ~~vvVtETGWPS~G~~~~~~-----as~~Na~~y~~~li~~~~s~~Gtp~rpg~~~~~yiF~lFDE-~~K~g~~~E~~wG 331 (483)
+||+|||-|..........+ -=++--+.|++.+.+.+. ..|.+.| -+|.-++.|- .|..| +.++.||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~-~dGv~v~-----GY~~WSl~Dn~EW~~G-~y~~RfG 441 (478)
T PRK09593 369 KPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAIN-EDGVELL-----GYTTWGCIDLVSAGTG-EMKKRYG 441 (478)
T ss_pred CCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCEE-----EEeeccchHhhcccCC-CccCeec
Confidence 58999999997654321111 112333444444444442 2465543 3777888875 36543 4789999
Q ss_pred ccCCCCC
Q 011551 332 LFYPNEQ 338 (483)
Q Consensus 332 lf~~d~~ 338 (483)
|++.|..
T Consensus 442 l~~VD~~ 448 (478)
T PRK09593 442 FIYVDRD 448 (478)
T ss_pred eEEECCC
Confidence 9998765
No 50
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=33.38 E-value=97 Score=26.91 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCCEEEEec--CC---hHHHHHhhcCCCeEE
Q 011551 41 EKVVELLKSQRIDRVKTYD--TD---SAVLAALANSDISVV 76 (483)
Q Consensus 41 ~~v~~~l~~~~~~~VRiY~--~d---~~vL~A~~~tgi~v~ 76 (483)
+++.+.++.+|+..|+++- .. ..+|++|+..|+++.
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~ 90 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVT 90 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 3445667778999999883 33 578999999999865
No 51
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=33.10 E-value=2.8e+02 Score=28.85 Aligned_cols=79 Identities=11% Similarity=0.133 Sum_probs=49.0
Q ss_pred CceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecCChHHHHHhhcCCCeEEEecCcchhHHhhhChhHHHHHHHHhhh
Q 011551 24 GKVGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANIS 103 (483)
Q Consensus 24 ~~~GvnYg~~~~n~ps~~~v~~~l~~~~~~~VRiY~~d~~vL~A~~~tgi~v~vGv~n~~l~~la~~~~~a~~wv~~~v~ 103 (483)
..+|||.-...++ +..++.++.+...+...|=+..-+|..++.++..||+|+.-|++ ...|+.+++.-
T Consensus 56 kPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s---------~~~A~~a~~~G-- 123 (320)
T cd04743 56 KPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS---------PGLLKQFLENG-- 123 (320)
T ss_pred CCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC---------HHHHHHHHHcC--
Confidence 4577877443322 33455666666666777766655666678888999999988774 23444444432
Q ss_pred hcCCCceEEEEEecccc
Q 011551 104 KYYPATKIEAVAVGNEV 120 (483)
Q Consensus 104 ~~~p~~~I~~I~VGNEv 120 (483)
.+ ..|+-|.|.
T Consensus 124 ----aD--~vVaqG~EA 134 (320)
T cd04743 124 ----AR--KFIFEGREC 134 (320)
T ss_pred ----CC--EEEEecCcC
Confidence 12 347788887
No 52
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=32.23 E-value=57 Score=34.19 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCCEEEEecCC-hHHHHHhhcCCCeEE
Q 011551 41 EKVVELLKSQRIDRVKTYDTD-SAVLAALANSDISVV 76 (483)
Q Consensus 41 ~~v~~~l~~~~~~~VRiY~~d-~~vL~A~~~tgi~v~ 76 (483)
.-..|+|+..|+++||+...+ |.-+.++.+.||+|.
T Consensus 298 gigaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 298 GIGAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred hHHHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 334789999999999999999 888889999999986
No 53
>PRK08815 GTP cyclohydrolase; Provisional
Probab=32.09 E-value=60 Score=34.49 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=32.3
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCCeEEEecC
Q 011551 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFP 80 (483)
Q Consensus 44 ~~~l~~~~~~~VRiY~~d~~vL~A~~~tgi~v~vGv~ 80 (483)
.|+|+..|+++||+...++.=+.++.+.||+|.=-++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6899999999999999999888899999999974343
No 54
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=31.52 E-value=63 Score=34.50 Aligned_cols=37 Identities=27% Similarity=0.419 Sum_probs=32.7
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCCeEEEecC
Q 011551 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFP 80 (483)
Q Consensus 44 ~~~l~~~~~~~VRiY~~d~~vL~A~~~tgi~v~vGv~ 80 (483)
.|+|+..|+++||+...+|.=+.++.+.||+|.=-++
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6899999999999999999999999999999984433
No 55
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=31.11 E-value=65 Score=34.56 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=31.3
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHhhcCCCeEE
Q 011551 43 VVELLKSQRIDRVKTYDTDSAVLAALANSDISVV 76 (483)
Q Consensus 43 v~~~l~~~~~~~VRiY~~d~~vL~A~~~tgi~v~ 76 (483)
..++|+..|+++||+...+|.=+.++.+.||+|.
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~ 371 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVT 371 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEE
Confidence 3789999999999999999988899999999997
No 56
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=31.04 E-value=6.2e+02 Score=26.26 Aligned_cols=129 Identities=13% Similarity=0.133 Sum_probs=73.8
Q ss_pred CCCCCcccccccchhhhhhHHHHHHhcCCcceeccCCccccccCCCccccccccccCCC-------CcccCCCCccccch
Q 011551 166 YPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNP-------GQVDSGNGLKYTNL 238 (483)
Q Consensus 166 ~pPS~g~F~~~~~~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~~~~i~ldyAlf~~~~-------~~~d~~~g~~Y~n~ 238 (483)
+|...+.+.++.. +.++.++|.+.+.++.+.+-++-- +.......... ....++. ......|.-.-..+
T Consensus 64 ~~~~~~l~~d~~i-~~~~~l~~~vh~~g~~~~~Ql~H~--G~~~~~~~~~~-~~~~ps~~~~~~~~~~~~~mt~~eI~~i 139 (343)
T cd04734 64 AFGNLNASDDEII-PGFRRLAEAVHAHGAVIMIQLTHL--GRRGDGDGSWL-PPLAPSAVPEPRHRAVPKAMEEEDIEEI 139 (343)
T ss_pred CCCccccCCHHHH-HHHHHHHHHHHhcCCeEEEeccCC--CcCcCcccCCC-cccCCCCCCCCCCCCCCCcCCHHHHHHH
Confidence 4444456665544 679999999999999999987532 11110000000 0000000 00000111112344
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeccC-------CCC-CCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Q 011551 239 FDAQLDAVFAAMSAISYNDVKVVVTETGW-------PSV-GDENEAGAGAANAAAYNGNLVRRVLSGSGT 300 (483)
Q Consensus 239 fda~~dav~~A~~k~g~~~~~vvVtETGW-------PS~-G~~~~~~as~~Na~~y~~~li~~~~s~~Gt 300 (483)
.+...+|...|. ++||.+++|.... || |.. -...+-+.+++|-.+|...+++.+++..|.
T Consensus 140 i~~f~~AA~ra~-~aGfDgVeih~ah-GyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~ 207 (343)
T cd04734 140 IAAFADAARRCQ-AGGLDGVELQAAH-GHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGP 207 (343)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEcccc-chHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCC
Confidence 555555555443 5799999999876 64 422 222345789999999999999999986664
No 57
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=30.91 E-value=75 Score=34.79 Aligned_cols=73 Identities=14% Similarity=0.238 Sum_probs=42.1
Q ss_pred ceEEEEeccCCCCCCCCCCC-----CCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCCC-CCCCCCCCcccc
Q 011551 258 VKVVVTETGWPSVGDENEAG-----AGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNEN-QKPGPTSERNYG 331 (483)
Q Consensus 258 ~~vvVtETGWPS~G~~~~~~-----as~~Na~~y~~~li~~~~s~~Gtp~rpg~~~~~yiF~lFDE~-~K~g~~~E~~wG 331 (483)
+||+|+|-|........+.+ -=++--+.+++.+.+.+. .|.+.| -+|.-++.|-- |..| ...+.||
T Consensus 366 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~--dGv~V~-----GY~~WSl~Dn~Ew~~G-~y~~RfG 437 (474)
T PRK09852 366 KPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIA--DGIPLM-----GYTTWGCIDLVSASTG-EMSKRYG 437 (474)
T ss_pred CCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHH--CCCCEE-----EEEeecccccccccCC-Cccceee
Confidence 57999999987543221111 112223334444444443 465543 37777888752 5543 3688999
Q ss_pred ccCCCCC
Q 011551 332 LFYPNEQ 338 (483)
Q Consensus 332 lf~~d~~ 338 (483)
|++.|.+
T Consensus 438 Lv~VD~~ 444 (474)
T PRK09852 438 FVYVDRD 444 (474)
T ss_pred eEEECCC
Confidence 9988765
No 58
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=30.66 E-value=65 Score=35.08 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=31.4
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCCeEEE
Q 011551 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVVV 77 (483)
Q Consensus 44 ~~~l~~~~~~~VRiY~~d~~vL~A~~~tgi~v~v 77 (483)
.|+|+..|+++||+..-+|.=+.++.+.||+|.=
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve 406 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVG 406 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEE
Confidence 6899999999999999999999999999999973
No 59
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.53 E-value=5.1e+02 Score=25.14 Aligned_cols=87 Identities=18% Similarity=0.295 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHhCCCCEEEEecCC---hHHHHHhhc--CCCeEEE--ecCcchhHHhhhChhHHHHHHHHhhhhcCCCc
Q 011551 37 LPSPEKVVELLKSQRIDRVKTYDTD---SAVLAALAN--SDISVVV--AFPNEELSKAAADQSFTDNWVQANISKYYPAT 109 (483)
Q Consensus 37 ~ps~~~v~~~l~~~~~~~VRiY~~d---~~vL~A~~~--tgi~v~v--Gv~n~~l~~la~~~~~a~~wv~~~v~~~~p~~ 109 (483)
+-+++|+.+.++ .|.+.|++|-++ +.-|+++++ .+++++. ||. .+++.+|++.
T Consensus 116 ~~T~~E~~~A~~-~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~atGGI~----------~~N~~~~l~a--------- 175 (213)
T PRK06552 116 CMTVTEIVTALE-AGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMVTGGVN----------LDNVKDWFAA--------- 175 (213)
T ss_pred cCCHHHHHHHHH-cCCCEEEECCcccCCHHHHHHHhhhCCCCEEEEECCCC----------HHHHHHHHHC---------
Confidence 458999888764 789999999655 567777764 3477653 443 2344556553
Q ss_pred eEEEEEeccccccCC-CCChhhHHHHHHHHHHHHH
Q 011551 110 KIEAVAVGNEVFADP-KNTTPFLVPAMKNVYNSLV 143 (483)
Q Consensus 110 ~I~~I~VGNEvl~~~-~~~~~~Ll~am~nv~~aL~ 143 (483)
.+..|.||...+... ..+...+-...++++++++
T Consensus 176 Ga~~vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 176 GADAVGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred CCcEEEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 357889998775432 1122236666666665554
No 60
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=30.35 E-value=3.6e+02 Score=27.44 Aligned_cols=85 Identities=9% Similarity=0.108 Sum_probs=45.1
Q ss_pred hHHHHHhhc--CCCeEE--E--ecCcc-hhHHhhhChhHHHHHHHHhhhhcCCCceEEEEEec-cccccC-CCCChhh-H
Q 011551 62 SAVLAALAN--SDISVV--V--AFPNE-ELSKAAADQSFTDNWVQANISKYYPATKIEAVAVG-NEVFAD-PKNTTPF-L 131 (483)
Q Consensus 62 ~~vL~A~~~--tgi~v~--v--Gv~n~-~l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VG-NEvl~~-~~~~~~~-L 131 (483)
...+.+++. .++||+ | |=|+. ....++++++.-++++++ +..+...-.+.+|-+= =|-... +..+... +
T Consensus 54 ~~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~s-~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~ 132 (318)
T cd02876 54 KGWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIKL-LVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKEL 132 (318)
T ss_pred hHHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHHH-HHHHHHHcCCCcEEEechhhhcccCCHHHHHHH
Confidence 334455553 579988 5 33443 356677776655555444 3333222234555442 111111 0111223 8
Q ss_pred HHHHHHHHHHHHhCCC
Q 011551 132 VPAMKNVYNSLVKYKL 147 (483)
Q Consensus 132 l~am~nv~~aL~~~gl 147 (483)
+..|+.+|++|.+.|+
T Consensus 133 ~~~l~el~~~l~~~~~ 148 (318)
T cd02876 133 IQLVIHLGETLHSANL 148 (318)
T ss_pred HHHHHHHHHHHhhcCC
Confidence 8999999999988765
No 61
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=30.32 E-value=5.2e+02 Score=25.10 Aligned_cols=107 Identities=15% Similarity=0.131 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCC-----------hHHHHHhhcCCCeEEE-ecCc---chhHHhhhChhHHHHHHHHhh
Q 011551 38 PSPEKVVELLKSQRIDRVKTYDTD-----------SAVLAALANSDISVVV-AFPN---EELSKAAADQSFTDNWVQANI 102 (483)
Q Consensus 38 ps~~~v~~~l~~~~~~~VRiY~~d-----------~~vL~A~~~tgi~v~v-Gv~n---~~l~~la~~~~~a~~wv~~~v 102 (483)
|++ ...+.||..++..|=.|-++ +.=++.+...|++|+. -... .....-+.-...|.+-++.+.
T Consensus 21 ~t~-~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~pIyq~~~~~~~~~~~~~G~~dA~~A~~~A~ 99 (212)
T cd06418 21 PTD-ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFPIYQGGGYSLDYFGYEQGVKDARDAVAAAR 99 (212)
T ss_pred CCH-HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCccccccCHHHHHHHHHHHHHHHH
Confidence 444 55677788888777777433 2456778889999763 2211 111111222334555555555
Q ss_pred hhcCCCceEEEEEeccccccCCCCChhh-HHHHHHHHHHHHHhCCCC
Q 011551 103 SKYYPATKIEAVAVGNEVFADPKNTTPF-LVPAMKNVYNSLVKYKLD 148 (483)
Q Consensus 103 ~~~~p~~~I~~I~VGNEvl~~~~~~~~~-Ll~am~nv~~aL~~~gl~ 148 (483)
.--.|...+.++.|=..... .+... ++|+++-+.++|...||.
T Consensus 100 ~lG~p~gs~IYfavD~d~~~---~~~~~~v~~Y~~a~~~~l~~~gY~ 143 (212)
T cd06418 100 ALGFPPGTIIYFAVDFDALD---DEVTEVILPYFRGWNDALHEAGYR 143 (212)
T ss_pred HcCCCCCCEEEEEeecCCCc---chhHHHHHHHHHHHHHHHHhcCCc
Confidence 44457666778888433321 22444 999999999999998874
No 62
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=30.11 E-value=6.5e+02 Score=27.80 Aligned_cols=60 Identities=25% Similarity=0.177 Sum_probs=37.9
Q ss_pred HHHHHhhhhcCC-CceEEEEEeccccccC------CCCC--hhh-HHHHHHH-HHHHHHhCCCCCCeEEec
Q 011551 96 NWVQANISKYYP-ATKIEAVAVGNEVFAD------PKNT--TPF-LVPAMKN-VYNSLVKYKLDSNVKVSS 155 (483)
Q Consensus 96 ~wv~~~v~~~~p-~~~I~~I~VGNEvl~~------~~~~--~~~-Ll~am~n-v~~aL~~~gl~~~IkVsT 155 (483)
+.+.+-|+.|-. +..|-+|.+.||+... .+.. .++ +...|++ ++-+|++.|++..+|+-.
T Consensus 208 ~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~ 278 (496)
T PF02055_consen 208 DYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILI 278 (496)
T ss_dssp HHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 445556666633 4789999999999862 1111 133 6667776 899999999955587643
No 63
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=29.62 E-value=69 Score=35.75 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=32.9
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCCeEEEecC
Q 011551 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFP 80 (483)
Q Consensus 44 ~~~l~~~~~~~VRiY~~d~~vL~A~~~tgi~v~vGv~ 80 (483)
.++|+..|+++||+..-+|.=+.++.+.||+|.=-++
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 7899999999999999999999999999999874333
No 64
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=29.27 E-value=82 Score=34.51 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=43.0
Q ss_pred ceEEEEeccCCCCCCCCCCC-----CCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCCCCCcccc
Q 011551 258 VKVVVTETGWPSVGDENEAG-----AGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGPTSERNYG 331 (483)
Q Consensus 258 ~~vvVtETGWPS~G~~~~~~-----as~~Na~~y~~~li~~~~s~~Gtp~rpg~~~~~yiF~lFDE-~~K~g~~~E~~wG 331 (483)
+||+|||-|........+.+ -=++--+.+++.+.+.+. ..|.+.| -+|.-++.|- .|..| +.++.||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~-~dGv~v~-----GY~~WSl~DnfEw~~G-~y~~RfG 441 (477)
T PRK15014 369 KPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVT-YDGVDLM-----GYTPWGCIDCVSFTTG-QYSKRYG 441 (477)
T ss_pred CCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCEE-----EEeeccchhhhcccCC-CccCccc
Confidence 58999999988643221111 112233334444444441 1465543 3777888874 36554 4789999
Q ss_pred ccCCCCC
Q 011551 332 LFYPNEQ 338 (483)
Q Consensus 332 lf~~d~~ 338 (483)
|++.|.+
T Consensus 442 l~~VD~~ 448 (477)
T PRK15014 442 FIYVNKH 448 (477)
T ss_pred eEEECCC
Confidence 9988765
No 65
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.99 E-value=1.4e+02 Score=29.24 Aligned_cols=79 Identities=19% Similarity=0.390 Sum_probs=49.0
Q ss_pred CCceeEEecCCCCCCCCHHHHHHHHHhCCCCEEEEecCC-----hHHHHHhhcCCCeEEE--ecCcchhHHhhhChhHHH
Q 011551 23 TGKVGINYGRVANNLPSPEKVVELLKSQRIDRVKTYDTD-----SAVLAALANSDISVVV--AFPNEELSKAAADQSFTD 95 (483)
Q Consensus 23 ~~~~GvnYg~~~~n~ps~~~v~~~l~~~~~~~VRiY~~d-----~~vL~A~~~tgi~v~v--Gv~n~~l~~la~~~~~a~ 95 (483)
-+.+||.|-...-.++. .--+++|||+- ..+..+....-+.++| -|-|+ .+-++..
T Consensus 42 ~sTiGIDFk~kti~l~g-----------~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne------~Sfeni~ 104 (207)
T KOG0078|consen 42 ISTIGIDFKIKTIELDG-----------KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNE------KSFENIR 104 (207)
T ss_pred cceEEEEEEEEEEEeCC-----------eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccch------HHHHHHH
Confidence 45577777554444443 23477889876 4677777654445444 44443 2334566
Q ss_pred HHHHHhhhhcCCCceEEEEEecccc
Q 011551 96 NWVQANISKYYPATKIEAVAVGNEV 120 (483)
Q Consensus 96 ~wv~~~v~~~~p~~~I~~I~VGNEv 120 (483)
.|++ +|..+.+. .+.-|.|||-.
T Consensus 105 ~W~~-~I~e~a~~-~v~~~LvGNK~ 127 (207)
T KOG0078|consen 105 NWIK-NIDEHASD-DVVKILVGNKC 127 (207)
T ss_pred HHHH-HHHhhCCC-CCcEEEeeccc
Confidence 7875 57777654 68899999955
No 66
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=28.81 E-value=1e+02 Score=31.33 Aligned_cols=79 Identities=14% Similarity=0.230 Sum_probs=43.9
Q ss_pred HHHhhc--CCCeEEEecCc----chhHHhhhChhHHHHHHHHhhhhcCCCceEEEEEeccccccCCCCChhh-HHHHHHH
Q 011551 65 LAALAN--SDISVVVAFPN----EELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPF-LVPAMKN 137 (483)
Q Consensus 65 L~A~~~--tgi~v~vGv~n----~~l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~-Ll~am~n 137 (483)
|.+++. .+++|++.|.. +....+..+.+.-++.+ ++|..+...-.+.+|-+==|..... ..... ++..|+.
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi-~~i~~~~~~~~~DGidiDwE~~~~~-~~d~~~~~~ll~~ 134 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFI-DSIVSFLKKYGFDGIDIDWEYPGAR-GDDRENYTALLKE 134 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHH-HHHHHHHHHcCCCeEEECCcCCCCC-ccHHHHHHHHHHH
Confidence 455554 49999998854 23445555544333333 3333332223466776644443221 12233 8899999
Q ss_pred HHHHHHhC
Q 011551 138 VYNSLVKY 145 (483)
Q Consensus 138 v~~aL~~~ 145 (483)
+|+.|.+.
T Consensus 135 lr~~l~~~ 142 (334)
T smart00636 135 LREALDKE 142 (334)
T ss_pred HHHHHHHh
Confidence 99999864
No 67
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=27.98 E-value=72 Score=32.85 Aligned_cols=91 Identities=12% Similarity=0.193 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCCCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCcc-EEEEEecCCC-C
Q 011551 243 LDAVFAAMSAISYNDVKVVVTETGWPSVGDENEAGAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLN-VYLFALFNEN-Q 320 (483)
Q Consensus 243 ~dav~~A~~k~g~~~~~vvVtETGWPS~G~~~~~~as~~Na~~y~~~li~~~~s~~Gtp~rpg~~~~-~yiF~lFDE~-~ 320 (483)
.+.+...|+++.--+++|.|||.-=-....... ....+.++.+++.+++.+.+.. +. .++ +.+..+.|.. |
T Consensus 219 ~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~-~~~~~~qA~~~~~~~~~~~~~~-----~~-~v~git~Wg~~D~~sW 291 (320)
T PF00331_consen 219 PEQIWNALDRFASLGLPIHITELDVRDDDNPPD-AEEEEAQAEYYRDFLTACFSHP-----PA-AVEGITWWGFTDGYSW 291 (320)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTSC-HHHHHHHHHHHHHHHHHHHHTT-----HC-TEEEEEESSSBTTGST
T ss_pred HHHHHHHHHHHHHcCCceEEEeeeecCCCCCcc-hHHHHHHHHHHHHHHHHHHhCC-----cc-CCCEEEEECCCCCCcc
Confidence 334455555555557999999964333222110 2446778889999999887621 01 233 3444455543 5
Q ss_pred CCCCCCCccccccCCCCCeee
Q 011551 321 KPGPTSERNYGLFYPNEQTVY 341 (483)
Q Consensus 321 K~g~~~E~~wGlf~~d~~~ky 341 (483)
.+... -.+=+||+.|.+||-
T Consensus 292 ~~~~~-~~~~~lfd~~~~~Kp 311 (320)
T PF00331_consen 292 RPDTP-PDRPLLFDEDYQPKP 311 (320)
T ss_dssp TGGHS-EG--SSB-TTSBB-H
T ss_pred cCCCC-CCCCeeECCCcCCCH
Confidence 54311 223478999998884
No 68
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=27.79 E-value=1.3e+02 Score=26.53 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCCEEEEe--c--------CC---hHHHHHhhcCCCeEE
Q 011551 40 PEKVVELLKSQRIDRVKTY--D--------TD---SAVLAALANSDISVV 76 (483)
Q Consensus 40 ~~~v~~~l~~~~~~~VRiY--~--------~d---~~vL~A~~~tgi~v~ 76 (483)
.+++.+.++.+|++.|+++ + .. ...|++|+..||+|.
T Consensus 52 a~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 52 AGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 3455666777899988887 3 33 578999999999975
No 69
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=27.74 E-value=1.3e+02 Score=31.36 Aligned_cols=75 Identities=24% Similarity=0.133 Sum_probs=49.4
Q ss_pred hHHHHHhhcCCCeEEEecCcchhHHhhhChhHHHHHHHHhhhhcCCCceEEEEEeccccccCCCCChhhHHHHHHHHHHH
Q 011551 62 SAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNS 141 (483)
Q Consensus 62 ~~vL~A~~~tgi~v~vGv~n~~l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~Ll~am~nv~~a 141 (483)
..||+++...|-.+.+|=.. .+.. .++.|.+|+...+..++ .+|.+|+--|.-... -. -++
T Consensus 175 m~VLkp~idsGkik~~Ge~~--~d~W--~ps~Aq~~men~lta~~--~~vdaVvA~nDgtag------Ga-------I~a 235 (341)
T COG4213 175 MKVLKPLIDSGKIKVVGEQW--TDGW--LPSNAQQIMENLLTANY--NDIDAVVAPNDGTAG------GA-------IAA 235 (341)
T ss_pred HHHHHHHhhCCceEEeeecc--cccc--CHHHHHHHHHHHHhccc--CceeEEEcCCCchhH------HH-------HHH
Confidence 47999888887555566521 1222 45678889888888775 448888776642211 12 256
Q ss_pred HHhCCCCCCeEEec
Q 011551 142 LVKYKLDSNVKVSS 155 (483)
Q Consensus 142 L~~~gl~~~IkVsT 155 (483)
|++.||+++|+||=
T Consensus 236 L~a~Gl~g~vpVsG 249 (341)
T COG4213 236 LKAQGLAGKVPVSG 249 (341)
T ss_pred HHhcccCCCCcccC
Confidence 78899998888764
No 70
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=26.98 E-value=1.3e+02 Score=26.93 Aligned_cols=39 Identities=28% Similarity=0.327 Sum_probs=35.8
Q ss_pred HHHHHHHhCCCCEEEEecCChHHHHHhhcCCCeEEEecC
Q 011551 42 KVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFP 80 (483)
Q Consensus 42 ~v~~~l~~~~~~~VRiY~~d~~vL~A~~~tgi~v~vGv~ 80 (483)
.+.++|+.+|++.|=+...-+..+.+|++.||+|..+-.
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 578999999999999988889999999999999999887
No 71
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=25.91 E-value=5.4e+02 Score=27.59 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=46.3
Q ss_pred HHHHHhhcCCCeEEEecCcch----------------hHHhhhCh-hHHHHHHHHhhhhcCC--CceEEEEEeccccccC
Q 011551 63 AVLAALANSDISVVVAFPNEE----------------LSKAAADQ-SFTDNWVQANISKYYP--ATKIEAVAVGNEVFAD 123 (483)
Q Consensus 63 ~vL~A~~~tgi~v~vGv~n~~----------------l~~la~~~-~~a~~wv~~~v~~~~p--~~~I~~I~VGNEvl~~ 123 (483)
..|++++..|++.+++..|.- ...|..+. +.=...+.+ |..|+. +.+|++|.-=||+-..
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~-Vv~~~~~~GI~f~~IsP~NEP~~~ 186 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLAD-VVKHYKKWGINFDYISPFNEPQWN 186 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHH-HHHHHHCTT--EEEEE--S-TTS-
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHH-HHHHHHhcCCccceeCCcCCCCCC
Confidence 578898999999998875420 01111111 111122222 333322 4789999999999876
Q ss_pred C---CC--C--hhh-HHHHHHHHHHHHHhCCCCCCeEEecccc
Q 011551 124 P---KN--T--TPF-LVPAMKNVYNSLVKYKLDSNVKVSSPIA 158 (483)
Q Consensus 124 ~---~~--~--~~~-Ll~am~nv~~aL~~~gl~~~IkVsT~~~ 158 (483)
+ .+ . ... ....|+.++.+|++.||..+ |...++
T Consensus 187 W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~--I~~~Ea 227 (384)
T PF14587_consen 187 WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTK--ISACEA 227 (384)
T ss_dssp GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-E--EEEEEE
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCce--EEecch
Confidence 3 11 1 123 78889999999999999754 454444
No 72
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=24.65 E-value=1.1e+02 Score=24.35 Aligned_cols=40 Identities=20% Similarity=0.405 Sum_probs=26.4
Q ss_pred HHHHHHHhhhhcCCCceEEEEEeccccccCCC--CChhh-HHHHHHHHHHHHHhC
Q 011551 94 TDNWVQANISKYYPATKIEAVAVGNEVFADPK--NTTPF-LVPAMKNVYNSLVKY 145 (483)
Q Consensus 94 a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~--~~~~~-Ll~am~nv~~aL~~~ 145 (483)
-..|++.||. .|+|.++.++ .+-.. |+|+++..++.++..
T Consensus 13 Li~WLedNi~------------~es~iiFDNded~tdSa~llp~ie~a~~~~r~l 55 (65)
T PF06117_consen 13 LIAWLEDNID------------CESDIIFDNDEDKTDSAALLPAIEQARADVRPL 55 (65)
T ss_pred HHHHHHcccC------------CCCCeeecCCCcccchHHHHHHHHHHHHHHHHH
Confidence 4579988764 2555666542 22233 999999999888643
No 73
>CHL00041 rps11 ribosomal protein S11
Probab=23.91 E-value=1.8e+02 Score=25.64 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=26.6
Q ss_pred HHHHHHHHhCCCCEEEEec--CC---hHHHHHhhcCCCeEE
Q 011551 41 EKVVELLKSQRIDRVKTYD--TD---SAVLAALANSDISVV 76 (483)
Q Consensus 41 ~~v~~~l~~~~~~~VRiY~--~d---~~vL~A~~~tgi~v~ 76 (483)
+++.+.++.+|+..|+++- .. ..+|++|+..|++|.
T Consensus 63 ~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 63 ENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 3345566778999888883 32 578999999999875
No 74
>PRK07198 hypothetical protein; Validated
Probab=23.74 E-value=67 Score=34.40 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=32.2
Q ss_pred HHHHHhCCCCEE-EEecCChHHHHHhhcCCCeEEEecC
Q 011551 44 VELLKSQRIDRV-KTYDTDSAVLAALANSDISVVVAFP 80 (483)
Q Consensus 44 ~~~l~~~~~~~V-RiY~~d~~vL~A~~~tgi~v~vGv~ 80 (483)
.|+|+.+|+++| |+...++.-+.++.+.||+|.=-|+
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 578899999999 9999999888999999999984443
No 75
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=23.48 E-value=1.7e+02 Score=26.50 Aligned_cols=37 Identities=27% Similarity=0.285 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCEEEEe--c--------CC---hHHHHHhhcCCCeEE
Q 011551 40 PEKVVELLKSQRIDRVKTY--D--------TD---SAVLAALANSDISVV 76 (483)
Q Consensus 40 ~~~v~~~l~~~~~~~VRiY--~--------~d---~~vL~A~~~tgi~v~ 76 (483)
.+++.+.++.+|++.|+++ + .. ...|++|+..||+|.
T Consensus 59 ae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~ 108 (132)
T PRK09607 59 AEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 108 (132)
T ss_pred HHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEE
Confidence 3445567777899988887 3 33 478999999999975
No 76
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=23.28 E-value=5.9e+02 Score=23.40 Aligned_cols=41 Identities=22% Similarity=0.224 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHhC--CCCEEEEecCCh-------HHHHHhhcCCCeEEE
Q 011551 37 LPSPEKVVELLKSQ--RIDRVKTYDTDS-------AVLAALANSDISVVV 77 (483)
Q Consensus 37 ~ps~~~v~~~l~~~--~~~~VRiY~~d~-------~vL~A~~~tgi~v~v 77 (483)
..++++++++++.. .+..|.+.+-+| .+++.+++.|+++.+
T Consensus 46 ~~~~~~i~~~i~~~~~~~~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i 95 (191)
T TIGR02495 46 EIEVEFLLEFLRSRQGLIDGVVITGGEPTLQAGLPDFLRKVRELGFEVKL 95 (191)
T ss_pred cCCHHHHHHHHHHhcCCCCeEEEECCcccCcHhHHHHHHHHHHCCCeEEE
Confidence 46789999888763 378999987552 456777778877655
No 77
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=22.85 E-value=3.9e+02 Score=27.16 Aligned_cols=95 Identities=18% Similarity=0.269 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCcccccccchhhhhhHHHHHHhcCCcceeccCCccccccCCCc
Q 011551 133 PAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADK 212 (483)
Q Consensus 133 ~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~~~~ 212 (483)
.+..+++...++.|.-+ +++..... .+.|+ ++.+.++..+..+.+-|+.++.=+.....
T Consensus 113 ~a~~E~er~v~~~gf~g-~~l~p~~~------~~~~~---------~~~~~pi~~~a~~~gvpv~ihtG~~~~~~----- 171 (293)
T COG2159 113 AAAEELERRVRELGFVG-VKLHPVAQ------GFYPD---------DPRLYPIYEAAEELGVPVVIHTGAGPGGA----- 171 (293)
T ss_pred HHHHHHHHHHHhcCceE-EEeccccc------CCCCC---------ChHHHHHHHHHHHcCCCEEEEeCCCCCCc-----
Confidence 46677788888888765 66543321 11121 14578999999999999999554332221
Q ss_pred cccccccccCCCCcccCCCCccccchHHHHHHHHHHHHHhcCCCCceEEEEecc--CCCCCC
Q 011551 213 ISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETG--WPSVGD 272 (483)
Q Consensus 213 i~ldyAlf~~~~~~~d~~~g~~Y~n~fda~~dav~~A~~k~g~~~~~vvVtETG--WPS~G~ 272 (483)
.++... .++ -++|-+ +.+ +|+++||+++.| +|..-.
T Consensus 172 -~~~~~~-------~~p-----------~~~~~v---a~~--fP~l~IVl~H~G~~~p~~~~ 209 (293)
T COG2159 172 -GLEKGH-------SDP-----------LYLDDV---ARK--FPELKIVLGHMGEDYPWELE 209 (293)
T ss_pred -ccccCC-------CCc-----------hHHHHH---HHH--CCCCcEEEEecCCCCchhHH
Confidence 111100 010 122222 233 799999999999 887543
No 78
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=22.48 E-value=1.3e+02 Score=29.14 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=33.8
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHhhcCCCeEEEecCc
Q 011551 44 VELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPN 81 (483)
Q Consensus 44 ~~~l~~~~~~~VRiY~~d~~vL~A~~~tgi~v~vGv~n 81 (483)
.++|+..|+++||+-..+|.=+.++.+.||+|.=-++.
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~ 170 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPL 170 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeec
Confidence 57899999999999999998899999999999877764
No 79
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=22.44 E-value=8.4e+02 Score=25.49 Aligned_cols=137 Identities=17% Similarity=0.279 Sum_probs=73.5
Q ss_pred CCCCHHHHHHHHH---hCCCCEEEEecCCh-------HHHHHhhcCCCe-EEEecCcchhHHhhhChhHHHHHHHHhhhh
Q 011551 36 NLPSPEKVVELLK---SQRIDRVKTYDTDS-------AVLAALANSDIS-VVVAFPNEELSKAAADQSFTDNWVQANISK 104 (483)
Q Consensus 36 n~ps~~~v~~~l~---~~~~~~VRiY~~d~-------~vL~A~~~tgi~-v~vGv~n~~l~~la~~~~~a~~wv~~~v~~ 104 (483)
++.|++++..+++ ..|+.+|||=+=.| .++..++..+++ |.++..-..++.. |..|-...
T Consensus 41 ~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~------a~~Lk~AG--- 111 (322)
T COG2896 41 ELLSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEIIARLARLGIRDLSLTTNGVLLARR------AADLKEAG--- 111 (322)
T ss_pred ccCCHHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHHHHHHhhcccceEEEecchhhHHHH------HHHHHHcC---
Confidence 5678999976554 47899999987653 567777766553 5555432334433 23332222
Q ss_pred cCCCceEEEEEeccccccCCCCChhh-HHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCcccccccchhhhh
Q 011551 105 YYPATKIEAVAVGNEVFADPKNTTPF-LVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALK 183 (483)
Q Consensus 105 ~~p~~~I~~I~VGNEvl~~~~~~~~~-Ll~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~l~ 183 (483)
+..+||..=+.=.|.+-. .+-.. +-..|+-|.+|+ ++|+. +|||-|+.- . | +++..|.
T Consensus 112 -l~rVNVSLDsld~e~f~~--IT~~~~~~~Vl~GI~~A~-~~Gl~-pVKlN~Vv~----k-------g-----vNd~ei~ 170 (322)
T COG2896 112 -LDRVNVSLDSLDPEKFRK--ITGRDRLDRVLEGIDAAV-EAGLT-PVKLNTVLM----K-------G-----VNDDEIE 170 (322)
T ss_pred -CcEEEeecccCCHHHHHH--HhCCCcHHHHHHHHHHHH-HcCCC-ceEEEEEEe----c-------C-----CCHHHHH
Confidence 112232221121111111 11111 445556665654 57887 499987642 1 1 2224688
Q ss_pred hHHHHHHhcCCcceeccCCccccc
Q 011551 184 PMLEFLRKTSSYLMVNAYPFFAYS 207 (483)
Q Consensus 184 ~~ldfL~~t~sp~~vNiyPyf~~~ 207 (483)
++++|..+.+- .++|-++.
T Consensus 171 ~l~e~~~~~~~-----~lrfIE~m 189 (322)
T COG2896 171 DLLEFAKERGA-----QLRFIELM 189 (322)
T ss_pred HHHHHHhhcCC-----ceEEEEEe
Confidence 99999866554 34555554
No 80
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=22.36 E-value=75 Score=26.58 Aligned_cols=23 Identities=30% Similarity=0.662 Sum_probs=18.8
Q ss_pred chhhhhhHHHHHHHHHhhhcCCC
Q 011551 2 ATLAAFSSFFFFFLVTFAFADTG 24 (483)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (483)
.+|++|+.++||.|+.++.+.+.
T Consensus 44 v~LA~FV~~lF~iL~~ms~sgsp 66 (90)
T PF15183_consen 44 VSLAAFVVFLFLILLYMSWSGSP 66 (90)
T ss_pred HHHHHHHHHHHHHHHHHhccCCC
Confidence 47999999999999998766543
No 81
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=22.21 E-value=2.2e+02 Score=25.62 Aligned_cols=42 Identities=24% Similarity=0.433 Sum_probs=32.5
Q ss_pred CHHHHHHHHHhCCCCEEEEecC---------------------C--hHHHHHhhcCCCeEEEecC
Q 011551 39 SPEKVVELLKSQRIDRVKTYDT---------------------D--SAVLAALANSDISVVVAFP 80 (483)
Q Consensus 39 s~~~v~~~l~~~~~~~VRiY~~---------------------d--~~vL~A~~~tgi~v~vGv~ 80 (483)
.|+++++.||..+++.|-+|.- | .++++|+...||+|++-+.
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEe
Confidence 3678888888888888888643 1 3677899999999998774
No 82
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.50 E-value=5.5e+02 Score=28.43 Aligned_cols=57 Identities=9% Similarity=0.228 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEecccccccccccCCCCCcccccccchhhhhhHHHHHHhcCCcceeccCCcc
Q 011551 128 TPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFF 204 (483)
Q Consensus 128 ~~~Ll~am~nv~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~F~~~~~~~~l~~~ldfL~~t~sp~~vNiyPyf 204 (483)
....+.+++.+|+++....+...+-|+-|..- +..+...++|+.+.+ +-.+++|+|-
T Consensus 346 ~e~~~~~v~~lr~~~p~i~i~tdiIvGfPgET-------------------~edf~~Tl~~v~~l~-~d~~~~f~ys 402 (509)
T PRK14327 346 RESYLELVRKIKEAIPNVALTTDIIVGFPNET-------------------DEQFEETLSLYREVG-FDHAYTFIYS 402 (509)
T ss_pred HHHHHHHHHHHHHhCCCcEEeeeEEEeCCCCC-------------------HHHHHHHHHHHHHcC-CCeEEEeeee
Confidence 33477777777776555544434666766321 124566777776553 2235555543
No 83
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=21.35 E-value=1.7e+02 Score=26.01 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHhCCCCEEEEecCC-----hHHHHHhhcCCCeEEEecCc
Q 011551 37 LPSPEKVVELLKSQRIDRVKTYDTD-----SAVLAALANSDISVVVAFPN 81 (483)
Q Consensus 37 ~ps~~~v~~~l~~~~~~~VRiY~~d-----~~vL~A~~~tgi~v~vGv~n 81 (483)
..+++++++..+..|++.|=+=|-+ +...+.++..||++++|+--
T Consensus 15 ~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 15 KDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred cCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 4489999999999999988887764 35566677899999999953
No 84
>PRK03941 NTPase; Reviewed
Probab=20.99 E-value=6e+02 Score=24.09 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=39.6
Q ss_pred CeEEEecCcchhHHhhhChhHHHHHHHHhhhhcCCCceEEEEEeccccccCCCCChhh-HHHHHHHHHHHHHh
Q 011551 73 ISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPF-LVPAMKNVYNSLVK 144 (483)
Q Consensus 73 i~v~vGv~n~~l~~la~~~~~a~~wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~-Ll~am~nv~~aL~~ 144 (483)
|+|.||-.|. .-.+.++..+..++|+..|.++.|=+.+=.+. .. .+ +..|+++.+.+|+.
T Consensus 1 m~V~VGS~NP----------vKi~Av~~af~~~~~~~~v~~v~v~SgV~~QP-~g-eET~~GA~nRA~~A~~~ 61 (174)
T PRK03941 1 MKVAVGSTNP----------VKVEAVENVFGKIFDDVEVVGVEVDSGVPDQP-FG-EETVKGAINRAKNAYSP 61 (174)
T ss_pred CEEEEeCCCH----------HHHHHHHHHHHHhCCCcEEEEecCCCCCCCCC-CC-HHHHHHHHHHHHHHHhc
Confidence 5678887662 11223555566666776677777766664442 23 55 99999999999985
No 85
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=20.29 E-value=2.8e+02 Score=30.23 Aligned_cols=75 Identities=19% Similarity=0.332 Sum_probs=42.8
Q ss_pred CCC-ceEEEEeccCCCCCCCC-CC---CCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCccEEEEEecCC-CCCCCCCCCc
Q 011551 255 YND-VKVVVTETGWPSVGDEN-EA---GAGAANAAAYNGNLVRRVLSGSGTPLRPKDPLNVYLFALFNE-NQKPGPTSER 328 (483)
Q Consensus 255 ~~~-~~vvVtETGWPS~G~~~-~~---~as~~Na~~y~~~li~~~~s~~Gtp~rpg~~~~~yiF~lFDE-~~K~g~~~E~ 328 (483)
+++ .+|+|||-|........ +. .-=++--+.|++.+.+.+. .|-+.| -+|.-++.|- .|.. +.++
T Consensus 364 Y~~~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~--dGv~v~-----GY~~WSl~Dn~Ew~~--Gy~~ 434 (467)
T TIGR01233 364 YPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIA--DGANVK-----GYFIWSLMDVFSWSN--GYEK 434 (467)
T ss_pred cCCCCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHH--cCCCEE-----EEeeccchhhhchhc--cccC
Confidence 444 46999999998643221 10 0112333444444444443 355432 3666677764 2544 4899
Q ss_pred cccccCCCCC
Q 011551 329 NYGLFYPNEQ 338 (483)
Q Consensus 329 ~wGlf~~d~~ 338 (483)
.|||++.|..
T Consensus 435 RfGLv~VD~~ 444 (467)
T TIGR01233 435 RYGLFYVDFD 444 (467)
T ss_pred ccceEEECCC
Confidence 9999998875
No 86
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=20.00 E-value=6e+02 Score=24.42 Aligned_cols=65 Identities=28% Similarity=0.404 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEec---cCCCCCCCCCCCCCHHHHHHHHH----HHHHHHHhCCCCCCCCCCCccEEEE
Q 011551 241 AQLDAVFAAMSAISYNDVKVVVTET---GWPSVGDENEAGAGAANAAAYNG----NLVRRVLSGSGTPLRPKDPLNVYLF 313 (483)
Q Consensus 241 a~~dav~~A~~k~g~~~~~vvVtET---GWPS~G~~~~~~as~~Na~~y~~----~li~~~~s~~Gtp~rpg~~~~~yiF 313 (483)
+.+|.++.++.+. ++.|+|.=- ||...++.. ......+.++. .+.++.+ +. -....|
T Consensus 62 ~~ld~~v~~a~~~---gi~vild~h~~~~w~~~~~~~---~~~~~~~~~~~~~~~~la~~y~---~~-------~~v~~~ 125 (281)
T PF00150_consen 62 ARLDRIVDAAQAY---GIYVILDLHNAPGWANGGDGY---GNNDTAQAWFKSFWRALAKRYK---DN-------PPVVGW 125 (281)
T ss_dssp HHHHHHHHHHHHT---T-EEEEEEEESTTCSSSTSTT---TTHHHHHHHHHHHHHHHHHHHT---TT-------TTTEEE
T ss_pred HHHHHHHHHHHhC---CCeEEEEeccCcccccccccc---ccchhhHHHHHhhhhhhccccC---CC-------CcEEEE
Confidence 3444454555554 577777643 474444332 33333344444 4444442 11 125689
Q ss_pred EecCCCCC
Q 011551 314 ALFNENQK 321 (483)
Q Consensus 314 ~lFDE~~K 321 (483)
+++||+--
T Consensus 126 el~NEP~~ 133 (281)
T PF00150_consen 126 ELWNEPNG 133 (281)
T ss_dssp ESSSSGCS
T ss_pred EecCCccc
Confidence 99999854
Done!