BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011553
         (483 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SZD4|PRS4A_ARATH 26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis
           thaliana GN=RPT2A PE=2 SV=1
          Length = 443

 Score =  839 bits (2167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/483 (88%), Positives = 436/483 (90%), Gaps = 40/483 (8%)

Query: 1   MGQGTPGGLNRQGPGGDRKGDGADKKDKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTP 60
           MGQG  GGLNRQG   DRK DG DKK+KKFEPAAPPARVGRKQRKQKGPEAAARLPTVTP
Sbjct: 1   MGQGPSGGLNRQG---DRKPDGGDKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTP 57

Query: 61  LSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEE 120
            +KCKLRLLKLERIKDYLLMEEEFV NQERLKPQEEKAEEDRSKVDDLRG+PMSVGNLEE
Sbjct: 58  STKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEE 117

Query: 121 LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVM 180
           LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGC+ILMHNKVLSVVG+LQDEVDPMVSVM
Sbjct: 118 LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVM 177

Query: 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 240
           KVEKAPLESYADIGGL+AQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL
Sbjct: 178 KVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 237

Query: 241 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 300
           LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR
Sbjct: 238 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 297

Query: 301 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 360
           YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP
Sbjct: 298 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 357

Query: 361 LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADD 420
           LPDIKTRRRIFQIHTS+MTL++DVNLEEFVMTKDEFSGA                     
Sbjct: 358 LPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGA--------------------- 396

Query: 421 VNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEG 480
                           DIKAICTEAGLLALRERRMKVTH DFKKAKEKVMFKKKEGVPEG
Sbjct: 397 ----------------DIKAICTEAGLLALRERRMKVTHPDFKKAKEKVMFKKKEGVPEG 440

Query: 481 LYM 483
           LYM
Sbjct: 441 LYM 443


>sp|Q9SL67|PRS4B_ARATH 26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis
           thaliana GN=RPT2B PE=2 SV=1
          Length = 443

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/483 (88%), Positives = 436/483 (90%), Gaps = 40/483 (8%)

Query: 1   MGQGTPGGLNRQGPGGDRKGDGADKKDKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTP 60
           MGQG  GGLNRQG   DRK DG +KK+KKFEPAAPPARVGRKQRKQKGPEAAARLPTVTP
Sbjct: 1   MGQGPSGGLNRQG---DRKPDGGEKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTP 57

Query: 61  LSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEE 120
            +KCKLRLLKLERIKDYLLMEEEFV NQERLKPQEEKAEEDRSKVDDLRG+PMSVGNLEE
Sbjct: 58  STKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEE 117

Query: 121 LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVM 180
           LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGC+ILMHNKVLSVVG+LQDEVDPMVSVM
Sbjct: 118 LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVM 177

Query: 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 240
           KVEKAPLESYADIGGL+AQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL
Sbjct: 178 KVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 237

Query: 241 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 300
           LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR
Sbjct: 238 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 297

Query: 301 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 360
           YDA+SGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP
Sbjct: 298 YDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 357

Query: 361 LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADD 420
           LPDIKTRRRIFQIHTS+MTLA+DVNLEEFVMTKDEFSGA                     
Sbjct: 358 LPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGA--------------------- 396

Query: 421 VNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEG 480
                           DIKAICTEAGLLALRERRMKVTH DFKKAKEKVMFKKKEGVPEG
Sbjct: 397 ----------------DIKAICTEAGLLALRERRMKVTHVDFKKAKEKVMFKKKEGVPEG 440

Query: 481 LYM 483
           LYM
Sbjct: 441 LYM 443


>sp|P46466|PRS4_ORYSJ 26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp.
           japonica GN=TBP2 PE=2 SV=2
          Length = 448

 Score =  815 bits (2104), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/485 (84%), Positives = 430/485 (88%), Gaps = 39/485 (8%)

Query: 1   MGQGTPGGLNRQG--PGGDRKGDGADKKDKKFEPAAPPARVGRKQRKQKGPEAAARLPTV 58
           MGQGTPGG+ +QG  PG  + G   DKKD+KFEP A P+RVGRKQRKQKGPEAAARLP V
Sbjct: 1   MGQGTPGGMGKQGGAPGDRKPGGDGDKKDRKFEPPAAPSRVGRKQRKQKGPEAAARLPNV 60

Query: 59  TPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNL 118
            PLSKC+LRLLKLER+KDYLLMEEEFV  QERL+P E+K EEDRSKVDDLRG+PMSVG+L
Sbjct: 61  APLSKCRLRLLKLERVKDYLLMEEEFVAAQERLRPTEDKTEEDRSKVDDLRGTPMSVGSL 120

Query: 119 EELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVS 178
           EE+IDE+HAIVSSSVGPEYYVGILSFVDKDQLEPGC+ILMHNKVLSVVG+LQDEVDPMVS
Sbjct: 121 EEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVS 180

Query: 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGK 238
           VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGI+PPKGVILYGEPGTGK
Sbjct: 181 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGK 240

Query: 239 TLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGT 298
           TLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVAD+LSPSIVFIDEIDAVGT
Sbjct: 241 TLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADELSPSIVFIDEIDAVGT 300

Query: 299 KRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIE 358
           KRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIE
Sbjct: 301 KRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIE 360

Query: 359 FPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLA 418
           FPLPDIKTRRRIFQIHTS+MTLADDVNLEEFVMTKDEFSGAD                  
Sbjct: 361 FPLPDIKTRRRIFQIHTSKMTLADDVNLEEFVMTKDEFSGAD------------------ 402

Query: 419 DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVP 478
                              IKAICTEAGLLALRERRMKVTH DFKKAKEKVMFKKKEGVP
Sbjct: 403 -------------------IKAICTEAGLLALRERRMKVTHADFKKAKEKVMFKKKEGVP 443

Query: 479 EGLYM 483
           EGLYM
Sbjct: 444 EGLYM 448


>sp|P48601|PRS4_DROME 26S protease regulatory subunit 4 OS=Drosophila melanogaster
           GN=Pros26.4 PE=2 SV=2
          Length = 439

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/476 (71%), Positives = 396/476 (83%), Gaps = 38/476 (7%)

Query: 8   GLNRQGPGGDRKGDGADKKDKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLR 67
           G N+   GG  +      K KK+EP   P RVG+K+R+ KGP+AA +LP VTP ++C+L+
Sbjct: 2   GQNQSAQGGAGEKKDDKDKKKKYEPPI-PTRVGKKKRRAKGPDAAMKLPQVTPHTRCRLK 60

Query: 68  LLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHA 127
           LLKLERIKDYL+ME+EF+ NQERLKPQ+EK EE+RSKVDDLRG+PMSVGNLEE+ID+NHA
Sbjct: 61  LLKLERIKDYLMMEDEFIRNQERLKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHA 120

Query: 128 IVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPL 187
           IVS+SVG E+YV ILSFVDKDQLEPGC++L+++KV +VVG+L D+ DPMV+VMK+EKAP 
Sbjct: 121 IVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQ 180

Query: 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVAN 247
           E+YADIGGLD QIQEIKE+VELPLTHPE YE++GIKPPKGVILYG PGTGKTLLAKAVAN
Sbjct: 181 ETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVAN 240

Query: 248 STSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGG 307
            TSATFLRVVGSELIQKYLGDGPKLVRELFRVA++ +PSIVFIDEIDAVGTKRYD++SGG
Sbjct: 241 QTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG 300

Query: 308 EREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTR 367
           EREIQRTMLELLNQLDGFDSRGDVKVI+ATNRIE+LDPAL+RPGRIDRKIEFPLPD KT+
Sbjct: 301 EREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 360

Query: 368 RRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFV 427
           RRIF IHTSRMTLA+DVNL E +M KD+ SGA                            
Sbjct: 361 RRIFTIHTSRMTLAEDVNLSELIMAKDDLSGA---------------------------- 392

Query: 428 MTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEGLYM 483
                    DIKAICTEAGL+ALRERRMKVT+ DFKK+KE V+++KKEG PEGLY+
Sbjct: 393 ---------DIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 439


>sp|P62193|PRS4_RAT 26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1
           PE=2 SV=1
          Length = 440

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/454 (72%), Positives = 386/454 (85%), Gaps = 38/454 (8%)

Query: 30  FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQE 89
           +EP  P  RVG+K++K KGP+AA++LP VTP ++C+L+LLKLERIKDYLLMEEEF+ NQE
Sbjct: 25  YEPPVP-TRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQE 83

Query: 90  RLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQ 149
           ++KP EEK EE+RSKVDDLRG+PMSVG LEE+ID+NHAIVS+SVG E+YV ILSFVDKD 
Sbjct: 84  QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDL 143

Query: 150 LEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVEL 209
           LEPGC++L+++KV +V+G+L D+ DP+V+VMKVEKAP E+YADIGGLD QIQEIKE+VEL
Sbjct: 144 LEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVEL 203

Query: 210 PLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDG 269
           PLTHPE YE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVGSELIQKYLGDG
Sbjct: 204 PLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG 263

Query: 270 PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRG 329
           PKLVRELFRVA++ +PSIVFIDEIDA+GTKRYD++SGGEREIQRTMLELLNQLDGFDSRG
Sbjct: 264 PKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRG 323

Query: 330 DVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEF 389
           DVKVI+ATNRIE+LDPAL+RPGRIDRKIEFPLPD KT++RIFQIHTSRMTLADDV L++ 
Sbjct: 324 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDL 383

Query: 390 VMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLA 449
           +M KD+ SGA                                     DIKAICTEAGL+A
Sbjct: 384 IMAKDDLSGA-------------------------------------DIKAICTEAGLMA 406

Query: 450 LRERRMKVTHTDFKKAKEKVMFKKKEGVPEGLYM 483
           LRERRMKVT+ DFKK+KE V++KK+EG PEGLY+
Sbjct: 407 LRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL 440


>sp|P62192|PRS4_MOUSE 26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1
           SV=1
          Length = 440

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/454 (72%), Positives = 386/454 (85%), Gaps = 38/454 (8%)

Query: 30  FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQE 89
           +EP  P  RVG+K++K KGP+AA++LP VTP ++C+L+LLKLERIKDYLLMEEEF+ NQE
Sbjct: 25  YEPPVP-TRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQE 83

Query: 90  RLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQ 149
           ++KP EEK EE+RSKVDDLRG+PMSVG LEE+ID+NHAIVS+SVG E+YV ILSFVDKD 
Sbjct: 84  QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDL 143

Query: 150 LEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVEL 209
           LEPGC++L+++KV +V+G+L D+ DP+V+VMKVEKAP E+YADIGGLD QIQEIKE+VEL
Sbjct: 144 LEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVEL 203

Query: 210 PLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDG 269
           PLTHPE YE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVGSELIQKYLGDG
Sbjct: 204 PLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG 263

Query: 270 PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRG 329
           PKLVRELFRVA++ +PSIVFIDEIDA+GTKRYD++SGGEREIQRTMLELLNQLDGFDSRG
Sbjct: 264 PKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRG 323

Query: 330 DVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEF 389
           DVKVI+ATNRIE+LDPAL+RPGRIDRKIEFPLPD KT++RIFQIHTSRMTLADDV L++ 
Sbjct: 324 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDL 383

Query: 390 VMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLA 449
           +M KD+ SGA                                     DIKAICTEAGL+A
Sbjct: 384 IMAKDDLSGA-------------------------------------DIKAICTEAGLMA 406

Query: 450 LRERRMKVTHTDFKKAKEKVMFKKKEGVPEGLYM 483
           LRERRMKVT+ DFKK+KE V++KK+EG PEGLY+
Sbjct: 407 LRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL 440


>sp|P62191|PRS4_HUMAN 26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1
           SV=1
          Length = 440

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/454 (72%), Positives = 386/454 (85%), Gaps = 38/454 (8%)

Query: 30  FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQE 89
           +EP  P  RVG+K++K KGP+AA++LP VTP ++C+L+LLKLERIKDYLLMEEEF+ NQE
Sbjct: 25  YEPPVP-TRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQE 83

Query: 90  RLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQ 149
           ++KP EEK EE+RSKVDDLRG+PMSVG LEE+ID+NHAIVS+SVG E+YV ILSFVDKD 
Sbjct: 84  QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDL 143

Query: 150 LEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVEL 209
           LEPGC++L+++KV +V+G+L D+ DP+V+VMKVEKAP E+YADIGGLD QIQEIKE+VEL
Sbjct: 144 LEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVEL 203

Query: 210 PLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDG 269
           PLTHPE YE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVGSELIQKYLGDG
Sbjct: 204 PLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG 263

Query: 270 PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRG 329
           PKLVRELFRVA++ +PSIVFIDEIDA+GTKRYD++SGGEREIQRTMLELLNQLDGFDSRG
Sbjct: 264 PKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRG 323

Query: 330 DVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEF 389
           DVKVI+ATNRIE+LDPAL+RPGRIDRKIEFPLPD KT++RIFQIHTSRMTLADDV L++ 
Sbjct: 324 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDL 383

Query: 390 VMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLA 449
           +M KD+ SGA                                     DIKAICTEAGL+A
Sbjct: 384 IMAKDDLSGA-------------------------------------DIKAICTEAGLMA 406

Query: 450 LRERRMKVTHTDFKKAKEKVMFKKKEGVPEGLYM 483
           LRERRMKVT+ DFKK+KE V++KK+EG PEGLY+
Sbjct: 407 LRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL 440


>sp|Q90732|PRS4_CHICK 26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2
           SV=1
          Length = 440

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/454 (72%), Positives = 382/454 (84%), Gaps = 38/454 (8%)

Query: 30  FEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQE 89
           +EP  P  RVG+K++K KGP+AA++ P VTP ++C+L+LLKLERIKDYLLMEEEF+ NQE
Sbjct: 25  YEPPVP-TRVGKKKKKTKGPDAASKPPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQE 83

Query: 90  RLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQ 149
           ++KP EEK EE+RSKVDDLRG+PMSVG LEE+ID+NHAIVS+SVG E+YV ILSFVDKD 
Sbjct: 84  QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDL 143

Query: 150 LEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVEL 209
           LEPGC++L+++KV +V+G+L D+ DP+V+VMK+EKAP E+YADIGGLD QIQEIKE+VEL
Sbjct: 144 LEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAPQETYADIGGLDNQIQEIKESVEL 203

Query: 210 PLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDG 269
           PLTHPE YE++GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVGSELIQKYLGDG
Sbjct: 204 PLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG 263

Query: 270 PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRG 329
           PKLVRELFRVA++  PSIVFIDEIDA+GTKRYD++SGGEREIQRTMLELLNQLDGFDSRG
Sbjct: 264 PKLVRELFRVAEEHGPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRG 323

Query: 330 DVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEF 389
           DVKVI+ATNRIE+LDPAL+RPGRIDRKIEFPLPD KT++RIFQIHTSRMTLADDV L+E 
Sbjct: 324 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDEL 383

Query: 390 VMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLA 449
           +M KD+ SGAD                                     IKAICTEAGL+A
Sbjct: 384 IMAKDDLSGAD-------------------------------------IKAICTEAGLMA 406

Query: 450 LRERRMKVTHTDFKKAKEKVMFKKKEGVPEGLYM 483
           LRERRMKVT+ DFKK+KE  ++KK EG PEGLY+
Sbjct: 407 LRERRMKVTNEDFKKSKENFLYKKTEGTPEGLYL 440


>sp|Q55BV5|PRS4_DICDI 26S protease regulatory subunit 4 homolog OS=Dictyostelium
           discoideum GN=psmC1 PE=1 SV=1
          Length = 439

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/478 (67%), Positives = 387/478 (80%), Gaps = 45/478 (9%)

Query: 10  NRQGPGGDRKGDGADKKDK-KFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRL 68
           N Q  G   +GD  +KKD+ K++P  PP + G+K +K++G E + +LP +TP SKCKL+ 
Sbjct: 3   NNQSQG---QGDKGEKKDQPKYQPPPPPTQFGKK-KKRRGAETSTKLPVITPHSKCKLKQ 58

Query: 69  LKLERIKDYLLMEEEFVTNQERLKP---QEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN 125
           LKLERIKDYLLME+EF+ N +  +P   +  K + D   +++LRG P++VGNLEE+ID+N
Sbjct: 59  LKLERIKDYLLMEQEFLQNYDLNQPKVDENSKEQADEKIIEELRGDPLTVGNLEEIIDDN 118

Query: 126 HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKA 185
           HAIVSS+VGPE+YV I+SFVDK +L  G  +L++NK LSVVG++  EVDPMV+VMKVEKA
Sbjct: 119 HAIVSSTVGPEHYVRIMSFVDKSKLYLGATVLLNNKTLSVVGVIDGEVDPMVNVMKVEKA 178

Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
           P ESY+DIGGL+AQ+QE+KEA+ELPLTHPELYE+IGIKPPKGVILYGEPGTGKTLLAKAV
Sbjct: 179 PTESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKTLLAKAV 238

Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
           AN TSATFLRVVGSELIQKYLGDGPKLVRELFRVAD+ +PSIVFIDEIDAVGTKRYD+ S
Sbjct: 239 ANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADECAPSIVFIDEIDAVGTKRYDSQS 298

Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIK 365
           GGEREIQRTMLELLNQLDGFD+R DVKVI+ATNRIE+LDPAL+RPGRIDRKIEFPLPDIK
Sbjct: 299 GGEREIQRTMLELLNQLDGFDARTDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDIK 358

Query: 366 TRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEE 425
           T+R+IF+IHT++M L++DVNLEEFVM+KD+ SGA                          
Sbjct: 359 TKRKIFEIHTAKMNLSEDVNLEEFVMSKDDLSGA-------------------------- 392

Query: 426 FVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEGLYM 483
                      DIKAICTE+GLLALRERRM+VTHTDFKKAKEKV+++K  G PEGLYM
Sbjct: 393 -----------DIKAICTESGLLALRERRMRVTHTDFKKAKEKVLYRKTAGAPEGLYM 439


>sp|O16368|PRS4_CAEEL Probable 26S protease regulatory subunit 4 OS=Caenorhabditis
           elegans GN=rpt-2 PE=3 SV=1
          Length = 443

 Score =  633 bits (1632), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 332/484 (68%), Positives = 398/484 (82%), Gaps = 42/484 (8%)

Query: 1   MGQGTPGGLNRQGPGGDR-KGDGADKKDKKFEPAAPPARVGRKQRKQKGPEAAARLPTVT 59
           MGQ   G   R   G DR  GDG  K+ KK+E A  P+R+G+K++  KGP+AA++LP VT
Sbjct: 1   MGQQQSGFGGR---GNDRGAGDGEKKEKKKYE-APIPSRIGKKKKGSKGPDAASKLPAVT 56

Query: 60  PLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLE 119
           P ++C+L+LLK ERIKDYLLME+EF+ NQERLKPQEE+ EE+R+KVD+LRG+PM+VG+LE
Sbjct: 57  PHARCRLKLLKSERIKDYLLMEQEFIQNQERLKPQEERQEEERAKVDELRGTPMAVGSLE 116

Query: 120 ELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSV 179
           E+ID+ HAIVS++VG E+YV I+SFVDK+QLEPGC++L+++K  +V+G+L D+ DPMVSV
Sbjct: 117 EIIDDQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSV 176

Query: 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKT 239
           MK+EKAP E+YAD+GGLD QIQEIKEAVELPLTHPE YE++GI+PPKGVILYG PGTGKT
Sbjct: 177 MKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKT 236

Query: 240 LLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTK 299
           LLAKAVAN TSATFLR+VGSELIQKYLGDGPK+VRELFRVA++ +PSIVFIDEIDAVGTK
Sbjct: 237 LLAKAVANQTSATFLRIVGSELIQKYLGDGPKMVRELFRVAEENAPSIVFIDEIDAVGTK 296

Query: 300 RYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEF 359
           RYD++SGGEREIQRTMLELLNQLDGFDSRGDVKV++ATNRIESLDPAL+RPGRIDRKIEF
Sbjct: 297 RYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRIDRKIEF 356

Query: 360 PLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLAD 419
           PLPD KT+RRIFQIHTSRMTL  +VNLEEF+  KDE SGAD                   
Sbjct: 357 PLPDEKTKRRIFQIHTSRMTLGKEVNLEEFITAKDELSGAD------------------- 397

Query: 420 DVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPE 479
                             IKA+CTEAGLLALRERRM+VT  DF+K+KE V+++KKEG PE
Sbjct: 398 ------------------IKAMCTEAGLLALRERRMRVTMEDFQKSKENVLYRKKEGAPE 439

Query: 480 GLYM 483
            LY+
Sbjct: 440 ELYL 443


>sp|P36612|PRS4_SCHPO 26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=mts2 PE=2 SV=1
          Length = 448

 Score =  603 bits (1555), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 308/487 (63%), Positives = 377/487 (77%), Gaps = 43/487 (8%)

Query: 1   MGQGTPGGLNRQGPGGD-RKGDGADKKDKKFEPAAPPARVGRKQRK-QKGPEAAARLPTV 58
           MGQ   G  +  G G +        K   K+EP  P  R GR+++K Q GP+A+A+LPTV
Sbjct: 1   MGQAQSGNFSNFGDGANGDNKKDQKKDKPKYEPPVP-TRTGRRKKKAQSGPDASAKLPTV 59

Query: 59  TPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNL 118
            P ++C+LRLLK++RI D+LLMEEE+V NQERLKPQ+E+ +E+R++VD++RG+PMSVG L
Sbjct: 60  IPTTRCRLRLLKMQRIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGTL 119

Query: 119 EELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVS 178
           EE+ID++HAIVS++ GPEYYV I+SFVDKD LEPGC++L+H+K +S+VGLL D+ DPM++
Sbjct: 120 EEIIDDDHAIVSTA-GPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMIN 178

Query: 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGK 238
           VMK++KAP ESYADIGGL++QIQEIKEAVELPLTHPELYE++GIKPPKGVILYG PGTGK
Sbjct: 179 VMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGK 238

Query: 239 TLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGT 298
           TLLAKAVAN TSATFLRVVGSELIQKYLGDGP+LVR+LF  A++ SPSIVFIDEIDA+GT
Sbjct: 239 TLLAKAVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGT 298

Query: 299 KRYDAHSGGEREIQRTMLELLNQLDGFD-SRGDVKVILATNRIESLDPALLRPGRIDRKI 357
           KRYDA SG EREIQRTMLELLNQLDGFD S+ D+KVI+ATNRI  LDPAL+RPGRIDRKI
Sbjct: 299 KRYDAQSGAEREIQRTMLELLNQLDGFDTSQRDIKVIMATNRISDLDPALIRPGRIDRKI 358

Query: 358 EFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTL 417
            F  PD  T+R+IF IHTS+M L +DVNLEE +  KD+ SG                   
Sbjct: 359 LFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSG------------------- 399

Query: 418 ADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGV 477
                             A+IKAI +EAGLLALRERRM+V   DF++A+EKV+  K EG 
Sbjct: 400 ------------------AEIKAIVSEAGLLALRERRMRVVMDDFRQAREKVLKTKDEGG 441

Query: 478 PE-GLYM 483
           P  GLY+
Sbjct: 442 PAGGLYI 448


>sp|P40327|PRS4_YEAST 26S protease regulatory subunit 4 homolog OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=RPT2 PE=1
           SV=3
          Length = 437

 Score =  580 bits (1495), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 296/483 (61%), Positives = 376/483 (77%), Gaps = 46/483 (9%)

Query: 1   MGQGTPGGLNRQGPGGDRKGDGADKKDKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTP 60
           MGQG   G +++   G  +         K+EP    ++ GRK+RK  GP  A +LP + P
Sbjct: 1   MGQGVSSGQDKKKKKGSNQ-------KPKYEPPVQ-SKFGRKKRK-GGPATAEKLPNIYP 51

Query: 61  LSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEE 120
            ++CKL+LL++ERIKD+LL+EEEFV+N E LKP E+K EE++ +++++RG+P+S+G LEE
Sbjct: 52  STRCKLKLLRMERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEE 111

Query: 121 LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVM 180
           +ID++HAIV+S   P+YYV ILSFVDK+ LEPGC++L+H+K +S+VG+LQD+ DPMVSVM
Sbjct: 112 IIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVM 171

Query: 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 240
           K++K+P ESY+DIGGL++QIQEIKE+VELPLTHPELYE++GIKPPKGVILYG PGTGKTL
Sbjct: 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTL 231

Query: 241 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 300
           LAKAVAN TSATFLR+VGSELIQKYLGDGP+L R++F+VA + +PSIVFIDEIDA+GTKR
Sbjct: 232 LAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKR 291

Query: 301 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 360
           YD++SGGEREIQRTMLELLNQLDGFD RGDVKVI+ATN+IE+LDPAL+RPGRIDRKI F 
Sbjct: 292 YDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFE 351

Query: 361 LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADD 420
            PD+ T+++I  IHTS+M L++DVNLE  V TKD+ SG                      
Sbjct: 352 NPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSG---------------------- 389

Query: 421 VNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEG 480
                          ADI+A+CTEAGLLALRERRM+VT  DFK+AKE+VM  K E   EG
Sbjct: 390 ---------------ADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVEENLEG 434

Query: 481 LYM 483
           LY+
Sbjct: 435 LYL 437


>sp|Q8SRH0|PRS4_ENCCU 26S protease regulatory subunit 4 homolog OS=Encephalitozoon
           cuniculi (strain GB-M1) GN=RPT2 PE=1 SV=1
          Length = 424

 Score =  499 bits (1285), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 265/442 (59%), Positives = 333/442 (75%), Gaps = 38/442 (8%)

Query: 41  RKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEE 100
           R++R+ K  +AA++ P V PL KCKLR LKL+++   L +E+  ++  E  K   E +  
Sbjct: 20  RRRRRVKEGKAASKPPQVYPLMKCKLRYLKLKKLAHLLSLEDNILSLCEPDK-SSEGSNS 78

Query: 101 DRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHN 160
            +  V+ LRGSP+SVG LEE +D++H I+++ VG EYYV I+SFVDKD LEPGC +L++ 
Sbjct: 79  QKHVVEQLRGSPLSVGTLEEFVDDHHGIITTGVGLEYYVNIMSFVDKDLLEPGCTVLLNY 138

Query: 161 KVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDI 220
           K  SVVG+L+ E+DPMV+VMK+EKAP E+YADIGGL+ QIQEIKE+VELPLT+PELY+++
Sbjct: 139 KDNSVVGVLEGEMDPMVNVMKLEKAPSETYADIGGLEEQIQEIKESVELPLTNPELYQEM 198

Query: 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA 280
           GIKPPKGVILYG PGTGKTLLAKAVAN TSATFLRVVG+ELIQ+YLG+GPKLVRELFRVA
Sbjct: 199 GIKPPKGVILYGLPGTGKTLLAKAVANQTSATFLRVVGTELIQEYLGEGPKLVRELFRVA 258

Query: 281 DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340
           D  +PSI+FIDEIDA+G KRY+  SGG RE+QRTMLELLNQLDGFD+R D+KVI+ATN+I
Sbjct: 259 DMHAPSIIFIDEIDAIGGKRYNTSSGGRREVQRTMLELLNQLDGFDTRNDIKVIMATNKI 318

Query: 341 ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGAD 400
           E+LDPAL+RPGRIDRKIEF +PD  T+++IF IHTSRMTL + VN+E  + +K++ SGA 
Sbjct: 319 EALDPALIRPGRIDRKIEFGMPDAATKKKIFDIHTSRMTLDESVNIELLITSKEDLSGA- 377

Query: 401 IKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHT 460
                                               DIKAICTEAG++ALRERR  VT  
Sbjct: 378 ------------------------------------DIKAICTEAGMIALRERRKTVTMK 401

Query: 461 DFKKAKEKVMFKKKEGVPEGLY 482
           DF  A+EKV F K++ V  GLY
Sbjct: 402 DFISAREKVFFSKQKMVSAGLY 423


>sp|P46507|PRS6B_MANSE 26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1
          Length = 415

 Score =  377 bits (968), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/418 (46%), Positives = 278/418 (66%), Gaps = 45/418 (10%)

Query: 48  GPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQER-LKPQEEKAEEDRSKVD 106
           GP+    L +    +K K    KL+R+ ++L ++EE++ +++R LK +   A+E+   V 
Sbjct: 25  GPQTFDELESEDLYTKYK----KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEE---VK 77

Query: 107 DLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVV 166
            ++  P+ +G   E +D+N  IV S+ G  YYV ILS +D++ L+P  ++ +H    ++V
Sbjct: 78  RIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALV 137

Query: 167 GLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPK 226
            +L  E D  +S+++ ++ P   Y+DIGG+D Q QEI+EAVELPLTH ELY  IGI+PP+
Sbjct: 138 DVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 197

Query: 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPS 286
           GV++YG PG GKT+LA AVA+ T+A F+RVVGSE +QKYLG+GP++VR++FR+A + SP+
Sbjct: 198 GVLMYGPPGCGKTMLANAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPA 257

Query: 287 IVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPA 346
           I+FIDEIDA+ TKR+DA +G +RE+QR +LELLNQ+DGFD   +VKVI+ATNR ++LDPA
Sbjct: 258 IIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA 317

Query: 347 LLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRR 406
           LLRPGR+DRKIEFPLPD + +R IF   T++M L+++V+LEEFV   D  SG        
Sbjct: 318 LLRPGRLDRKIEFPLPDRRQKRLIFSTITAKMNLSEEVDLEEFVARPDRVSG-------- 369

Query: 407 IFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKK 464
                                        ADI AIC EAG+ A+RE R  V   DF+K
Sbjct: 370 -----------------------------ADINAICQEAGMNAVRENRYIVLPKDFEK 398


>sp|Q4R7L3|PRS6B_MACFA 26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4
           PE=2 SV=1
          Length = 418

 Score =  374 bits (959), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/410 (46%), Positives = 278/410 (67%), Gaps = 41/410 (10%)

Query: 67  RLLKLERIKDYLLMEEEFVTN-QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN 125
           R  KL++  ++L ++EE++ + Q+ LK +   A+E+  ++  +   P+ +G   E +D+N
Sbjct: 43  RYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSI---PLVIGQFLEAVDQN 99

Query: 126 HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKA 185
            AIV S+ G  YYV ILS +D++ L+P  ++ +H    ++V +L  E D  + ++  ++ 
Sbjct: 100 TAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQK 159

Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
           P   YADIGG+D Q QE++EAVELPLTH ELY+ IGI PP+GV++YG PG GKT+LAKAV
Sbjct: 160 PDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAV 219

Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
           A+ T+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDEIDA+ TKR+DA +
Sbjct: 220 AHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQT 279

Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIK 365
           G +RE+QR +LELLNQ+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD +
Sbjct: 280 GADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 339

Query: 366 TRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEE 425
            +R IF   TS+M L+++V+LE++V   D+ SGADI +                      
Sbjct: 340 QKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINS---------------------- 377

Query: 426 FVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 475
                          IC E+G+LA+RE R  V   DF+KA + V+ K ++
Sbjct: 378 ---------------ICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQ 412


>sp|P43686|PRS6B_HUMAN 26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1
           SV=2
          Length = 418

 Score =  374 bits (959), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/410 (46%), Positives = 278/410 (67%), Gaps = 41/410 (10%)

Query: 67  RLLKLERIKDYLLMEEEFVTN-QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN 125
           R  KL++  ++L ++EE++ + Q+ LK +   A+E+  ++  +   P+ +G   E +D+N
Sbjct: 43  RYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSI---PLVIGQFLEAVDQN 99

Query: 126 HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKA 185
            AIV S+ G  YYV ILS +D++ L+P  ++ +H    ++V +L  E D  + ++  ++ 
Sbjct: 100 TAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQK 159

Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
           P   YADIGG+D Q QE++EAVELPLTH ELY+ IGI PP+GV++YG PG GKT+LAKAV
Sbjct: 160 PDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAV 219

Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
           A+ T+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDEIDA+ TKR+DA +
Sbjct: 220 AHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQT 279

Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIK 365
           G +RE+QR +LELLNQ+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD +
Sbjct: 280 GADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 339

Query: 366 TRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEE 425
            +R IF   TS+M L+++V+LE++V   D+ SGADI +                      
Sbjct: 340 QKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINS---------------------- 377

Query: 426 FVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 475
                          IC E+G+LA+RE R  V   DF+KA + V+ K ++
Sbjct: 378 ---------------ICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQ 412


>sp|Q3T030|PRS6B_BOVIN 26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1
          Length = 418

 Score =  374 bits (959), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/410 (46%), Positives = 278/410 (67%), Gaps = 41/410 (10%)

Query: 67  RLLKLERIKDYLLMEEEFVTN-QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN 125
           R  KL++  ++L ++EE++ + Q+ LK +   A+E+  ++  +   P+ +G   E +D+N
Sbjct: 43  RYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSI---PLVIGQFLEAVDQN 99

Query: 126 HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKA 185
            AIV S+ G  YYV ILS +D++ L+P  ++ +H    ++V +L  E D  + ++  ++ 
Sbjct: 100 TAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQK 159

Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
           P   YADIGG+D Q QE++EAVELPLTH ELY+ IGI PP+GV++YG PG GKT+LAKAV
Sbjct: 160 PDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAV 219

Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
           A+ T+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDEIDA+ TKR+DA +
Sbjct: 220 AHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQT 279

Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIK 365
           G +RE+QR +LELLNQ+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD +
Sbjct: 280 GADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 339

Query: 366 TRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEE 425
            +R IF   TS+M L+++V+LE++V   D+ SGADI +                      
Sbjct: 340 QKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINS---------------------- 377

Query: 426 FVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 475
                          IC E+G+LA+RE R  V   DF+KA + V+ K ++
Sbjct: 378 ---------------ICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQ 412


>sp|Q63570|PRS6B_RAT 26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4
           PE=1 SV=1
          Length = 418

 Score =  374 bits (959), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/410 (46%), Positives = 278/410 (67%), Gaps = 41/410 (10%)

Query: 67  RLLKLERIKDYLLMEEEFVTN-QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN 125
           R  KL++  ++L ++EE++ + Q+ LK +   A+E+  ++  +   P+ +G   E +D+N
Sbjct: 43  RYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSI---PLVIGQFLEAVDQN 99

Query: 126 HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKA 185
            AIV S+ G  YYV ILS +D++ L+P  ++ +H    ++V +L  E D  + ++  ++ 
Sbjct: 100 TAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQK 159

Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
           P   YADIGG+D Q QE++EAVELPLTH ELY+ IGI PP+GV++YG PG GKT+LAKAV
Sbjct: 160 PDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAV 219

Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
           A+ T+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDEIDA+ TKR+DA +
Sbjct: 220 AHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQT 279

Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIK 365
           G +RE+QR +LELLNQ+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD +
Sbjct: 280 GADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 339

Query: 366 TRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEE 425
            +R IF   TS+M L+++V+LE++V   D+ SGADI +                      
Sbjct: 340 QKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINS---------------------- 377

Query: 426 FVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 475
                          IC E+G+LA+RE R  V   DF+KA + V+ K ++
Sbjct: 378 ---------------ICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQ 412


>sp|P54775|PRS6B_MOUSE 26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1
           SV=2
          Length = 418

 Score =  374 bits (959), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/410 (46%), Positives = 278/410 (67%), Gaps = 41/410 (10%)

Query: 67  RLLKLERIKDYLLMEEEFVTN-QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN 125
           R  KL++  ++L ++EE++ + Q+ LK +   A+E+  ++  +   P+ +G   E +D+N
Sbjct: 43  RYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSI---PLVIGQFLEAVDQN 99

Query: 126 HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKA 185
            AIV S+ G  YYV ILS +D++ L+P  ++ +H    ++V +L  E D  + ++  ++ 
Sbjct: 100 TAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQK 159

Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
           P   YADIGG+D Q QE++EAVELPLTH ELY+ IGI PP+GV++YG PG GKT+LAKAV
Sbjct: 160 PDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAV 219

Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
           A+ T+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDEIDA+ TKR+DA +
Sbjct: 220 AHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQT 279

Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIK 365
           G +RE+QR +LELLNQ+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD +
Sbjct: 280 GADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 339

Query: 366 TRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEE 425
            +R IF   TS+M L+++V+LE++V   D+ SGADI +                      
Sbjct: 340 QKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINS---------------------- 377

Query: 426 FVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 475
                          IC E+G+LA+RE R  V   DF+KA + V+ K ++
Sbjct: 378 ---------------ICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQ 412


>sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana
           GN=RPT3 PE=1 SV=1
          Length = 408

 Score =  373 bits (957), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/399 (46%), Positives = 271/399 (67%), Gaps = 41/399 (10%)

Query: 67  RLLKLERIKDYLLMEEEFVTN-QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN 125
           RL  LER  ++  ++EE+V + Q+ LK +  +A+E+   V  ++  P+ +G   E++D+N
Sbjct: 33  RLKSLERQLEFTDIQEEYVKDEQKNLKRELLRAQEE---VKRIQSVPLVIGQFMEMVDQN 89

Query: 126 HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKA 185
           + IV S+ G  YYV ILS ++++ L+P  ++ +H    ++V +L  E D  +S++   + 
Sbjct: 90  NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK 149

Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
           P  SY DIGG D Q QEI+EAVELPLTH ELY+ IGI PP+GV+LYG PGTGKT+LAKAV
Sbjct: 150 PDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 209

Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
           AN T+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDE+DA+ T R+DA +
Sbjct: 210 ANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQT 269

Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIK 365
           G +RE+QR ++ELLNQ+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD +
Sbjct: 270 GADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 329

Query: 366 TRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEE 425
            +R +FQ+ TS+M L+D+V+LE++V   D                               
Sbjct: 330 QKRLVFQVCTSKMNLSDEVDLEDYVSRPD------------------------------- 358

Query: 426 FVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKK 464
                 + S A+I AIC EAG+ A+R+ R  +   DF+K
Sbjct: 359 ------KISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 391


>sp|O28303|PAN_ARCFU Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus
           (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
           100126) GN=pan PE=1 SV=1
          Length = 398

 Score =  372 bits (956), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/399 (48%), Positives = 272/399 (68%), Gaps = 40/399 (10%)

Query: 81  EEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVG 140
           E++F+ + ER++  E +    RS+V+ LR  P+ VG + +++++   +V SS GP++ V 
Sbjct: 33  EKKFIES-ERIR-YEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVN 90

Query: 141 ILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQI 200
              ++++++L+PG  + ++ + L++V +L    DPMV   +VE+ P  SY DIGGLD QI
Sbjct: 91  TSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKPEVSYEDIGGLDVQI 150

Query: 201 QEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSE 260
           +EI+EAVELPL  PEL+ ++GI+PPKGV+LYG PGTGKTLLAKAVAN T ATF+RVVGSE
Sbjct: 151 EEIREAVELPLLKPELFAEVGIEPPKGVLLYGPPGTGKTLLAKAVANQTRATFIRVVGSE 210

Query: 261 LIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLN 320
            +QKY+G+G +LVRE+F++A + +PSI+FIDE+DA+  +R ++ + G+RE+QRTM++LL 
Sbjct: 211 FVQKYIGEGARLVREVFQLAKEKAPSIIFIDELDAIAARRTNSDTSGDREVQRTMMQLLA 270

Query: 321 QLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTL 380
           +LDGFD RGDVKVI ATNRI+ LDPA+LRPGR DR IE PLP  + R +IF+IHT +M L
Sbjct: 271 ELDGFDPRGDVKVIGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIFKIHTRKMKL 330

Query: 381 ADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKA 440
           A+DV+ +E     +  SGA                                     DIKA
Sbjct: 331 AEDVDFKELARITEGASGA-------------------------------------DIKA 353

Query: 441 ICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPE 479
           ICTEAG+ A+RE R KVT  DF KA EKV+ KK   +P+
Sbjct: 354 ICTEAGMFAIREERAKVTMLDFTKAIEKVL-KKTTPIPD 391


>sp|P85200|PRS6B_HELAN 26S protease regulatory subunit 6B homolog OS=Helianthus annuus
           PE=1 SV=1
          Length = 414

 Score =  369 bits (948), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/399 (45%), Positives = 273/399 (68%), Gaps = 41/399 (10%)

Query: 67  RLLKLERIKDYLLMEEEFVTNQ-ERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN 125
           RL  L+R  +++ ++EE+V ++ + LK ++ +++E+   V  ++  P+ +G   E+ID+N
Sbjct: 39  RLKTLDRQIEFIDIQEEYVKDELKNLKREQLRSQEE---VKRIQSVPLVIGQFMEMIDQN 95

Query: 126 HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKA 185
           + IV S+ G  YYV ILS ++++ L+P  ++ +H    ++V +L  E D  +S++   + 
Sbjct: 96  NGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEK 155

Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
           P  +Y DIGG D Q QEI+EAVELPLTH ELY+ IGI PP+GV+LYG PGTGKT+LAKAV
Sbjct: 156 PDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 215

Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
           AN T+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDE+DA+ T R+DA +
Sbjct: 216 ANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQT 275

Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIK 365
           G +RE+QR ++ELLNQ+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD +
Sbjct: 276 GADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 335

Query: 366 TRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEE 425
            +R +FQ+ T++M L+D+V+LE++V   D                               
Sbjct: 336 QKRLVFQVCTAKMNLSDEVDLEDYVSRPD------------------------------- 364

Query: 426 FVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKK 464
                 + S A+I AIC EAG+ A+R+ R  +   DF+K
Sbjct: 365 ------KISAAEITAICQEAGMHAVRKNRYVILPKDFEK 397


>sp|P46502|PRS6B_CAEEL Probable 26S protease regulatory subunit 6B OS=Caenorhabditis
           elegans GN=rpt-3 PE=3 SV=1
          Length = 414

 Score =  367 bits (942), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/412 (47%), Positives = 275/412 (66%), Gaps = 46/412 (11%)

Query: 61  LSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEE 120
           L+  + +L  L+ ++DY+ +E   +  +E L  QEE        V  ++  P+ +G   E
Sbjct: 40  LTTLERQLAHLQVMEDYIKLETRNL-EKELLHAQEE--------VKRIQSVPLVIGQFLE 90

Query: 121 LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVM 180
            +D+NHAIV S+ G  YYV +LS +D++ L+PGC++ +H    ++V +L  E D  + ++
Sbjct: 91  AVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQML 150

Query: 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 240
           + ++ P  SY DIGGLD Q QE++EAVELPLTH ELY+ IGI PP+GV++YG PG GKT+
Sbjct: 151 RPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTM 210

Query: 241 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 300
           LAKAVA +T+A+F+RVVGSE +QKYLG+GP++VR++FR+A + SPSI+FIDEIDA+ TKR
Sbjct: 211 LAKAVAANTAASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPSIIFIDEIDAIATKR 270

Query: 301 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 360
           +DA +G +RE+QR +LELLNQ+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFP
Sbjct: 271 FDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRQDTLDPALLRPGRLDRKIEFP 330

Query: 361 LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADD 420
           LPD + +R +F    SRM L+DDV+LE++V   D+ SGADI +                 
Sbjct: 331 LPDRRQKRLVFSTVCSRMNLSDDVDLEDWVARPDKISGADINS----------------- 373

Query: 421 VNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFK 472
                               IC EAG+ A+RE R  V   D +KA + V+ K
Sbjct: 374 --------------------ICQEAGMQAVRENRYVVLTKDLEKAYKNVVKK 405


>sp|P54778|PRS6B_SOLTU 26S protease regulatory subunit 6B homolog OS=Solanum tuberosum
           PE=2 SV=1
          Length = 413

 Score =  365 bits (936), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/428 (43%), Positives = 279/428 (65%), Gaps = 52/428 (12%)

Query: 49  PEAAARLPTVTPLSKCK-----------LRLLKLERIKDYLLMEEEFVTNQ-ERLKPQEE 96
           P+ A +LP   P +               RL  L+R  +++ ++EE+V ++ + L+ +  
Sbjct: 9   PKPAEKLPATRPETSITDVPSDGEDDLYARLKSLQRQLEFIEIQEEYVKDELKNLRREHL 68

Query: 97  KAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAI 156
           +A+E+   V  ++  P+ +G   E+ID+N+AIV S+ G  YYV ILS ++++ L+P  ++
Sbjct: 69  RAQEE---VKRIQSVPLVIGQFMEMIDQNNAIVGSTTGSNYYVRILSTINRELLKPSASV 125

Query: 157 LMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPEL 216
            +     ++V +L  E D  +S++   + P  +Y DIGG D Q QEI+EAVELPLTH EL
Sbjct: 126 GLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHEL 185

Query: 217 YEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVREL 276
           Y+ IGI PP+GV+LYG PGTGKT+LAKAVA+ T+A F+RVVGSE +QKYLG+GP++VR++
Sbjct: 186 YKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDV 245

Query: 277 FRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILA 336
           FR+A + +P+I+FIDE+DA+ T R+DA +G +RE+QR ++ELLNQ+DGFD   +VKVI+A
Sbjct: 246 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMA 305

Query: 337 TNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEF 396
           TNR ++LDPALLRPGR+DRKIEFPLPD + +R +FQ+ T++M L D+V+LE++V   D  
Sbjct: 306 TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDYVSRPD-- 363

Query: 397 SGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMK 456
                                              + S A+I AIC EAG+ A+R+ R  
Sbjct: 364 -----------------------------------KISAAEITAICQEAGMHAVRKNRYV 388

Query: 457 VTHTDFKK 464
           +   DF+K
Sbjct: 389 ILPKDFEK 396


>sp|P34123|PRS6B_DICDI 26S protease regulatory subunit 6B homolog OS=Dictyostelium
           discoideum GN=psmC4 PE=1 SV=1
          Length = 403

 Score =  360 bits (923), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 186/399 (46%), Positives = 267/399 (66%), Gaps = 41/399 (10%)

Query: 67  RLLKLERIKDYLLMEEEFVTNQER-LKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN 125
           ++  LE   D+  ++EE++  + + LK +   A+E+   V  +R  P+ +G L E++D N
Sbjct: 28  KMKSLESKLDFFNIQEEYIKYEYKNLKRELLHAQEE---VKRIRSVPLLIGQLLEMVDSN 84

Query: 126 HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKA 185
             IV S+ G    V ILS +D++ L+P  ++ +     ++V  L  E D  + ++  ++ 
Sbjct: 85  TGIVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNALVDTLPPESDSSIHLLGADEK 144

Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
           P ESY+DIGG D Q QE++EAVELPLTH  LY+ IGI PP+GV+LYG PGTGKT+LAKAV
Sbjct: 145 PSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 204

Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
           A+ TSA F+RVVGSE +QKYLG+GP+LVR++FR+A + SP+I+FIDEIDA+ TKR+DA +
Sbjct: 205 AHHTSAAFIRVVGSEFVQKYLGEGPRLVRDVFRLARENSPAIIFIDEIDAIATKRFDAQT 264

Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIK 365
           G +RE+QR ++ELLNQ+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFPLPD +
Sbjct: 265 GADREVQRILMELLNQMDGFDVSVNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRR 324

Query: 366 TRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEE 425
            +R IFQ+ TS+M L+D+V+LE++V   D+ SGA+I++                      
Sbjct: 325 QKRLIFQVITSKMNLSDEVDLEDYVSRPDKLSGAEIQS---------------------- 362

Query: 426 FVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKK 464
                          IC EAG+ A+R+ R  +   DF+K
Sbjct: 363 ---------------ICQEAGMHAIRKNRYVILPKDFEK 386


>sp|Q8SQI9|PRS6B_ENCCU 26S protease regulatory subunit 6B homolog OS=Encephalitozoon
           cuniculi (strain GB-M1) GN=ECU08_1970 PE=1 SV=1
          Length = 387

 Score =  356 bits (913), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 188/418 (44%), Positives = 262/418 (62%), Gaps = 50/418 (11%)

Query: 65  KLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDE 124
           KLRLL++   + Y+  E E +  +ER           R ++D ++  P+ +G   E ID 
Sbjct: 19  KLRLLEIR--EGYVRKEIETLKREER---------HSREELDRVKSVPLIMGQFLEPIDS 67

Query: 125 NHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEK 184
           + AIV S+ G  + V ILS VD++ L+P   + +H    ++VG+L  EVD  + VM   +
Sbjct: 68  STAIVGSTAGSNFVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESE 127

Query: 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKA 244
            P  +Y D+GGLD Q QEIKE VELPL   +LY  IGI PP+GV+LYG PGTGKT+L KA
Sbjct: 128 KPSVTYGDVGGLDVQKQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKA 187

Query: 245 VANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAH 304
           VAN T ATF+RV GSE +QKYLG+GP++VR++FR+A + +PSIVFIDE+D++ TKR+DA 
Sbjct: 188 VANHTKATFIRVNGSEFVQKYLGEGPRMVRDVFRLAREKAPSIVFIDEVDSIATKRFDAS 247

Query: 305 SGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDI 364
           +  +RE+QR ++ELLNQ+DGFD   +VKVI+ATNR +++DPALLRPGR+DRKIEFPLPD 
Sbjct: 248 TSADREVQRVLIELLNQMDGFDPAANVKVIMATNRADTIDPALLRPGRLDRKIEFPLPDR 307

Query: 365 KTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLE 424
           + +R +F   TS+M+L D V++E  V   ++ S ADI +                     
Sbjct: 308 RQKRLVFNAITSKMSLNDSVDIESLVCRPEKISCADINS--------------------- 346

Query: 425 EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEGLY 482
                           IC EAG+LA+R  R  VT  DF++A  KV+  ++ G     Y
Sbjct: 347 ----------------ICQEAGMLAVRASRYMVTQRDFEEAYSKVV--ERSGTQPAFY 386


>sp|Q58576|PAN_METJA Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii
           (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
           100440) GN=pan PE=1 SV=1
          Length = 430

 Score =  353 bits (907), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 181/369 (49%), Positives = 250/369 (67%), Gaps = 37/369 (10%)

Query: 102 RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNK 161
           R ++D +R  P+ VG + + + E   +V SS GP + V +  FV+ D L PG  + ++ +
Sbjct: 81  RRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQ 140

Query: 162 VLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIG 221
            L+VV +L +  D     M+V++ P   Y DIGGL+ Q+QEI+E VELPL HPEL+E +G
Sbjct: 141 TLTVVDVLPENKDYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVG 200

Query: 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVAD 281
           I+PPKG++LYG PGTGKTLLAKAVA  T+ATF+RVVGSEL++K++G+G  LV+++F++A 
Sbjct: 201 IEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAK 260

Query: 282 DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341
           + +PSI+FIDEIDA+  KR DA +GG+RE+QRT+++LL ++DGFD+RGDVK+I ATNR +
Sbjct: 261 EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD 320

Query: 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADI 401
            LDPA+LRPGR DR IE P PD K R  I +IHT +M LA+DVNLEE             
Sbjct: 321 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEI------------ 368

Query: 402 KTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 461
                      ++MT              +   GA++KAICTEAG+ A+RE R  VT  D
Sbjct: 369 -----------AKMT--------------EGCVGAELKAICTEAGMNAIRELRDYVTMDD 403

Query: 462 FKKAKEKVM 470
           F+KA EK+M
Sbjct: 404 FRKAVEKIM 412


>sp|O26824|PAN_METTH Proteasome-activating nucleotidase OS=Methanothermobacter
           thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
           10044 / NBRC 100330 / Delta H) GN=pan PE=3 SV=1
          Length = 410

 Score =  348 bits (893), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 189/418 (45%), Positives = 268/418 (64%), Gaps = 50/418 (11%)

Query: 62  SKCKLRLL----KLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGN 117
           SK K  L+    KLE  KD LL+E E    + RL   + + +  R +++  R  P+ +  
Sbjct: 27  SKTKRNLMWKIRKLE--KDKLLIENE----RTRL---DREVKSLRGEIERFRTPPLVIAT 77

Query: 118 LEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMV 177
           + E++D++   V S+ GP + +    F+D+ QLEPG  + ++ +  S+V +L  E DP+V
Sbjct: 78  VTEVLDDHRVAVKSTTGPHFVINYSRFIDRKQLEPGARVALNQQTFSIVDVLPSEKDPVV 137

Query: 178 SVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTG 237
           + M+VE+ P  SY  IGGL+ Q++E+KE VELPL  PEL+E IGI+PPKGV+LYG PGTG
Sbjct: 138 TGMEVEEKPDVSYEQIGGLEEQVREVKETVELPLKKPELFEKIGIEPPKGVLLYGPPGTG 197

Query: 238 KTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVG 297
           KTLLAKAVA+ T+ATF+++V SE ++KY+G+G +LVR +F +A + SPSI+FIDEIDAV 
Sbjct: 198 KTLLAKAVAHETNATFIKIVASEFVRKYIGEGARLVRGVFELAKEKSPSIIFIDEIDAVA 257

Query: 298 TKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKI 357
            KR  + + G+RE+QRT+++LL +LDGF+SRG+V ++ ATNR + LDPALLRPGR DR I
Sbjct: 258 AKRLKSSTSGDREVQRTLMQLLAELDGFESRGNVGIVAATNRPDILDPALLRPGRFDRFI 317

Query: 358 EFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTL 417
           E PLP+   RR I +IHTS M LA++V++E      D  SGAD+                
Sbjct: 318 EVPLPNEDGRREILKIHTSGMALAEEVDIELLARITDGASGADL---------------- 361

Query: 418 ADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 475
                                KAICTEAG+ A+R+ R +VT  DF  A +K+M  +KE
Sbjct: 362 ---------------------KAICTEAGMFAIRDERDEVTMADFMDAVDKIMGVEKE 398


>sp|Q8TX03|PAN_METKA Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain
           AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3
           SV=1
          Length = 436

 Score =  348 bits (892), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 183/388 (47%), Positives = 255/388 (65%), Gaps = 37/388 (9%)

Query: 88  QERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDK 147
           +E L+ +E   E+ RS +  ++  P+ VG +EE++D+   IV SS GP++   +   VD+
Sbjct: 76  REELRRKEVMIEKLRSDLQRMKKPPLIVGTVEEILDDGRVIVKSSTGPKFVSNVSPTVDR 135

Query: 148 DQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAV 207
           ++LEPG  + ++ + ++VV +L  E D  V  M+V+++P  SY DIGGLD QI+EI+E V
Sbjct: 136 NELEPGANVALNQQSMAVVDVLPSEKDSRVLAMEVDESPDVSYDDIGGLDEQIREIREVV 195

Query: 208 ELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLG 267
           E PL  PEL+E +G++PPKGV+LYG PGTGKTLLAKAVAN   ATF+R+   EL+QK++G
Sbjct: 196 EKPLKEPELFEKVGVEPPKGVLLYGPPGTGKTLLAKAVANHADATFIRLAAPELVQKFIG 255

Query: 268 DGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS 327
           +G +LVRELF +A + +PSI+FIDEIDA+G +R    + G+RE+QRT+ +LL ++DGFD 
Sbjct: 256 EGARLVRELFELAREKAPSIIFIDEIDAIGARRMRDATSGDREVQRTLTQLLAEMDGFDP 315

Query: 328 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLE 387
             D+KVI ATNR + LDPALLRPGR DR I+ PLPD + R  IF+IHT  M LA+DV+L+
Sbjct: 316 LDDIKVIAATNRKDILDPALLRPGRFDRHIKIPLPDEEGRYEIFKIHTRDMNLAEDVDLQ 375

Query: 388 EFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGL 447
           +     +  SGA                                     DIKAICTEAG+
Sbjct: 376 KLAKITEGASGA-------------------------------------DIKAICTEAGM 398

Query: 448 LALRERRMKVTHTDFKKAKEKVMFKKKE 475
           +A+RE R  VT  DF KA ++VM KK+E
Sbjct: 399 MAIREDRDIVTMDDFLKAVDRVMGKKEE 426


>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
           GN=tbpA PE=3 SV=1
          Length = 423

 Score =  347 bits (891), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 178/391 (45%), Positives = 262/391 (67%), Gaps = 40/391 (10%)

Query: 68  LLKLERIKDYLLMEEEFVTNQER-LKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENH 126
           L +L+R  +Y+ ++EE++ +++R LK +  +A+E+  ++  +   P+ +G   E ID+N 
Sbjct: 45  LKRLQRHLEYIQLQEEYIKDEQRSLKRELVRAQEEIKRIQSV---PLVIGQFMEAIDQNT 101

Query: 127 AIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAP 186
            IV SS G  Y V ILS +D+++L+P  ++ +H    ++V +L  E D  ++++   + P
Sbjct: 102 GIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLGENEKP 161

Query: 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVA 246
             +YAD+GGLD Q QEI+EAVELPLT  +LY+ IGI PP+GV+LYG PGTGKT+L KAVA
Sbjct: 162 DVTYADVGGLDMQKQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVA 221

Query: 247 NSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSG 306
           NST+A+F+RV GSE +QKYLG+GP++VR++FR+A + SP+I+FIDEIDA+ TKR+DA +G
Sbjct: 222 NSTTASFIRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIATKRFDAQTG 281

Query: 307 GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKT 366
            +RE+QR +LELLNQ+DGF+   +VKVI+ATNR ++LDPALLRPGR+DRKIEFP      
Sbjct: 282 ADREVQRILLELLNQMDGFEQSSNVKVIMATNRADTLDPALLRPGRLDRKIEFP------ 335

Query: 367 RRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEF 426
                                         S  D + RR IF    S+M+L+ +V+L+  
Sbjct: 336 ------------------------------SLRDRRERRLIFSTIASKMSLSPEVDLDSL 365

Query: 427 VMTKDEFSGADIKAICTEAGLLALRERRMKV 457
           ++  +  SGA I AI  EAGL A+R+ R  +
Sbjct: 366 IVRNEPLSGAVIAAIMQEAGLRAVRKNRYNI 396


>sp|A3CV35|PAN_METMJ Proteasome-activating nucleotidase OS=Methanoculleus marisnigri
           (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1
          Length = 412

 Score =  345 bits (884), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 175/368 (47%), Positives = 244/368 (66%), Gaps = 37/368 (10%)

Query: 102 RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNK 161
           +S+++ LR  P+ +G + ++ID +  IV SS GP + V     +D D L+PG    ++ +
Sbjct: 64  KSEIEQLRSPPLVIGTVTDVIDNSRVIVRSSAGPRFLVRTSQLIDPDLLKPGVRCTLNQQ 123

Query: 162 VLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIG 221
            L++V +L    D  +  M++ ++P E+Y +IGGL+ QI+EI+EAVELPLT P+L+E +G
Sbjct: 124 SLAIVDVLPTSYDAQIYGMELVESPEETYENIGGLEPQIEEIREAVELPLTKPQLFEKVG 183

Query: 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVAD 281
           I PPKGV+LYG PGTGKTLLA+AVA+ T+A FLRVVGSEL+QKY+G+G +LVRELF +A 
Sbjct: 184 ISPPKGVLLYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYIGEGARLVRELFDLAK 243

Query: 282 DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341
             +PSI+FIDEIDA+G  R D+ + G+RE+QRT+++LL ++DGFD+RGDVK++ ATNRI+
Sbjct: 244 QRAPSIIFIDEIDAIGAHRNDSTTSGDREVQRTLMQLLAEMDGFDNRGDVKIVAATNRID 303

Query: 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADI 401
            LD ALLRPGR DR IE PLPD + R  I +IHT  M + +DVNL E             
Sbjct: 304 ILDRALLRPGRFDRMIEIPLPDHQGRLAILKIHTQYMNIGEDVNLSE------------- 350

Query: 402 KTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 461
                      SR+T   +              GAD++AIC EAG+ A+R  R  V   D
Sbjct: 351 ----------VSRLTEGKN--------------GADLRAICMEAGMFAIRMERDAVNSED 386

Query: 462 FKKAKEKV 469
           F KA +K+
Sbjct: 387 FMKAIDKL 394


>sp|O74894|PRS6B_SCHPO 26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=rpt3 PE=3 SV=1
          Length = 389

 Score =  343 bits (880), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 182/406 (44%), Positives = 265/406 (65%), Gaps = 42/406 (10%)

Query: 67  RLLKLERIKDYLLMEEEFVT-NQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDEN 125
           R   LER  + L ++E F+  + + LK +  +A+E+   V  ++  P+ +G   E ID+N
Sbjct: 12  RWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEE---VKRIQSVPLVIGQFLEAIDQN 68

Query: 126 HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKA 185
            AIV S+ G  Y V ILS +D++ L+P  ++ +     ++V +L  E D  +S+++ ++ 
Sbjct: 69  TAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDER 128

Query: 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV 245
           P  SYAD+GGLD Q QE++EAVELPLT  +LY  IGI PP+GV+LYG PGTGKT+L KAV
Sbjct: 129 PDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAV 188

Query: 246 ANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305
           ANST+A F+RVVGSE +QKYLG+GP++VR++FR+A + +P+I+FIDEIDA+ TKR+DA +
Sbjct: 189 ANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQT 248

Query: 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP-LPDI 364
           G +RE+QR ++ELL Q+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFP   D 
Sbjct: 249 GADREVQRILIELLTQMDGFDQGANVKVIMATNRADTLDPALLRPGRLDRKIEFPSYRDR 308

Query: 365 KTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLE 424
           + RR +FQ  T++M L+ +V+L+ F+M  D  S                           
Sbjct: 309 RQRRLVFQTITAKMLLSPEVDLDTFIMRPDASS--------------------------- 341

Query: 425 EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 470
                     GA I AI  +AGLLA+R+ R  +  +D ++A  + +
Sbjct: 342 ----------GAQIAAIMQDAGLLAVRKSRGVILQSDIEEAYARAV 377


>sp|B6YXR2|PAN_THEON Proteasome-activating nucleotidase OS=Thermococcus onnurineus
           (strain NA1) GN=pan PE=3 SV=1
          Length = 398

 Score =  343 bits (879), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 184/398 (46%), Positives = 255/398 (64%), Gaps = 41/398 (10%)

Query: 73  RIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSS 132
           RI+   L       ++ERL   E +    R ++  LR  P   G L EL+DE+ AIV + 
Sbjct: 24  RIRQLELQVRTLEADKERL---ERELSRLRMEMSRLRQPPAFAGTLIELLDEDRAIVQNY 80

Query: 133 VGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYAD 192
            GP + V I  +++++ L+PG  + +  + +++V LL  E DP V   +V + P  SY D
Sbjct: 81  NGPRFVVRIAPWIERENLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPTVSYND 140

Query: 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT 252
           IGGLD Q+QE++EA+ELPL HPEL+E +GI+PPKGV+LYG PG GKTL+AKA+A+  +AT
Sbjct: 141 IGGLDKQLQELREAIELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAKALAHEVNAT 200

Query: 253 FLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312
           F+RVVGSEL++K++G+G +LV ELF +A + +P+I+FIDEIDA+G KR D  +GGERE+ 
Sbjct: 201 FIRVVGSELVRKFIGEGARLVHELFELAKEKAPAIIFIDEIDAIGAKRMDETTGGEREVN 260

Query: 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ 372
           RT+++LL ++DGFD  G+VK+I ATNR + LDPALLRPGR DR IE PLP+ K+R  I +
Sbjct: 261 RTLMQLLAEMDGFDPSGNVKIIAATNRPDILDPALLRPGRFDRLIEVPLPNFKSRLEILK 320

Query: 373 IHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE 432
           IHT RM L                 G D++          + MT              + 
Sbjct: 321 IHTKRMNL----------------KGVDLRI--------IAEMT--------------EG 342

Query: 433 FSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 470
            SGAD+KAI  EAG+ A+R+RR  VT  DF KA EKV+
Sbjct: 343 ASGADLKAITMEAGMFAIRDRREYVTQEDFLKAIEKVL 380


>sp|P33298|PRS6B_YEAST 26S protease regulatory subunit 6B homolog OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=RPT3 PE=1
           SV=2
          Length = 428

 Score =  342 bits (876), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 181/406 (44%), Positives = 263/406 (64%), Gaps = 42/406 (10%)

Query: 62  SKCKLRLLKLERIKDYLLMEEEFVTNQER-LKPQEEKAEEDRSKVDDLRGSPMSVGNLEE 120
           S    +L KLE+  + L ++E+++ +++R LK + ++A+E+   V  ++  P+ +G   E
Sbjct: 45  SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEE---VKRIQSVPLVIGQFLE 101

Query: 121 LIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVM 180
            ID+N  IVSS+ G  Y V ILS +D++ L+P  ++ +H    ++V +L  + D  +SVM
Sbjct: 102 PIDQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVM 161

Query: 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 240
              + P  +YAD+GGLD Q QEI+EAVELPL   +LYE IGI PP+GV+LYG PGTGKT+
Sbjct: 162 GENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTM 221

Query: 241 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 300
           L KAVANST A F+RV GSE + KYLG+GP++VR++FR+A + +PSI+FIDE+D++ TKR
Sbjct: 222 LVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKR 281

Query: 301 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 360
           +DA +G +RE+QR ++ELL Q+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFP
Sbjct: 282 FDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFP 341

Query: 361 -LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLAD 419
            L D + RR IF    S+M+LA + +L+  ++  D                         
Sbjct: 342 SLRDRRERRLIFGTIASKMSLAPEADLDSLIIRND------------------------- 376

Query: 420 DVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKA 465
                         SGA I AI  EAGL A+R+ R  +  +D ++A
Sbjct: 377 ------------SLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEA 410


>sp|O57940|PAN_PYRHO Proteasome-activating nucleotidase OS=Pyrococcus horikoshii (strain
           ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
           GN=pan PE=3 SV=1
          Length = 399

 Score =  342 bits (876), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 184/398 (46%), Positives = 254/398 (63%), Gaps = 41/398 (10%)

Query: 73  RIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSS 132
           RI+   L       ++ERL   E +    RS++  LR  P   G + E++DE+ AIV + 
Sbjct: 25  RIRQLELQVRMLEADKERL---ERELSRLRSEMSRLRQPPAFAGTVIEVLDEDRAIVQNY 81

Query: 133 VGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYAD 192
            GP + V I  ++D+ +L PG  + +  + ++VV +L    DP V   +V + P  +Y D
Sbjct: 82  NGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYND 141

Query: 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT 252
           IGGL  Q+QE++EA+ELPL HPEL+E++GI PPKGV+LYG PG GKTL+AKA+A+  +AT
Sbjct: 142 IGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNAT 201

Query: 253 FLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312
           F+RVVGSEL++KY+G+G +LV ELF +A + +P+I+FIDEIDA+G KR D  +GGERE+ 
Sbjct: 202 FIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVN 261

Query: 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ 372
           RT+++LL ++DGFD RG+VKVI ATNR + LDPALLRPGR DR IE PLPD + R  I +
Sbjct: 262 RTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILK 321

Query: 373 IHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE 432
           +HT RM L                 G D++          + MT              + 
Sbjct: 322 VHTRRMKL----------------KGVDLRA--------IAEMT--------------EG 343

Query: 433 FSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 470
            SGAD+KAI TEAG+ A+RERR  VT  DF KA +KV+
Sbjct: 344 ASGADLKAIATEAGMFAIRERRTYVTQEDFLKAVDKVL 381


>sp|C5A6P8|PAN_THEGJ Proteasome-activating nucleotidase OS=Thermococcus gammatolerans
           (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1
          Length = 397

 Score =  341 bits (874), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 184/402 (45%), Positives = 259/402 (64%), Gaps = 41/402 (10%)

Query: 73  RIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSS 132
           RI+   L       ++ERL   E +    R+++  LR  P   G + E++D++ AIV + 
Sbjct: 23  RIRQLELQVRTLEADKERL---ERELSRLRTEMSRLRQPPAFAGTVIEVLDDDRAIVQNY 79

Query: 133 VGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYAD 192
            GP + V I  ++++D+L+PG  + +  + +++V LL  E DP V   +V + P  +Y D
Sbjct: 80  NGPRFVVRIAPWIERDKLKPGSRVALDQRTMAIVELLPTEKDPSVLGFEVIEKPRVTYQD 139

Query: 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT 252
           IGGL+ Q+ E++EAVELPL HPEL+E +GI+PPKGV+LYG PG GKTL+AKAVAN  +AT
Sbjct: 140 IGGLERQLAELREAVELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAKAVANHVNAT 199

Query: 253 FLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312
           F+RVVGSEL++K++G+G +LV ELF +A + +P+I+FIDEIDA+G KR D  +GGERE+ 
Sbjct: 200 FIRVVGSELVRKFIGEGARLVHELFEMAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVN 259

Query: 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ 372
           RT+++LL ++DGFD RG+VKVI ATNR + LDPALLRPGR DR IE PLPD + R  I +
Sbjct: 260 RTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFRGRLEILK 319

Query: 373 IHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE 432
           +HT +M L  +V+L    +  D   GA                                 
Sbjct: 320 VHTRKMNLR-NVDLS---IIADITEGA--------------------------------- 342

Query: 433 FSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKK 474
            SGAD+KAI TEAG+ A+R+RR  VT  DF KA +KV+  +K
Sbjct: 343 -SGADLKAIATEAGMFAIRDRRTYVTQEDFLKAVDKVLGAEK 383


>sp|Q9V287|PAN_PYRAB Proteasome-activating nucleotidase OS=Pyrococcus abyssi (strain GE5
           / Orsay) GN=pan PE=3 SV=2
          Length = 396

 Score =  340 bits (873), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 180/398 (45%), Positives = 252/398 (63%), Gaps = 41/398 (10%)

Query: 73  RIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSS 132
           RI+   L       ++ERL   E +    RS++  LR  P   G + E++D++ AIV + 
Sbjct: 22  RIRQLELQVRMLEADKERL---ERELSRLRSEMSRLRQPPAFAGTVIEVLDDDRAIVQNY 78

Query: 133 VGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYAD 192
            GP + V I  ++++D+L PG  + +  + ++++ LL    DP V   +V + P  +Y D
Sbjct: 79  NGPRFVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTVLGFEVIERPNVTYND 138

Query: 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT 252
           IGGL  Q+QE++EA+ELPL HPEL+E++GI PPKGV+LYG PG GKTL+AKA+A+  +AT
Sbjct: 139 IGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNAT 198

Query: 253 FLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312
           F+RVVGSEL++KY+G+G +LV ELF +A + +P+I+FIDEIDA+G KR D  +GGERE+ 
Sbjct: 199 FIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVN 258

Query: 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ 372
           RT+++LL ++DGFD RG+VKVI ATNR + LDPALLRPGR DR IE PLPD + R  I +
Sbjct: 259 RTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILK 318

Query: 373 IHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE 432
           +HT RM L                                       +V+L       + 
Sbjct: 319 VHTRRMKLK--------------------------------------NVDLRVIAEITEG 340

Query: 433 FSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 470
            SGAD+KAI TEAG+ A+RERR  VT  DF KA +KV+
Sbjct: 341 ASGADLKAIATEAGMFAIRERRTYVTQEDFLKAVDKVL 378


>sp|Q8U4H3|PAN_PYRFU Proteasome-activating nucleotidase OS=Pyrococcus furiosus (strain
           ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pan PE=3 SV=1
          Length = 396

 Score =  340 bits (871), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 182/403 (45%), Positives = 258/403 (64%), Gaps = 41/403 (10%)

Query: 73  RIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSS 132
           RI+   L       ++ERL   E +    RS++  LR  P   G++ E++D++ AIV + 
Sbjct: 22  RIRQLELQVRMLEADKERL---ERELSRLRSEMSRLRQPPAFAGSVIEVLDDDRAIVQNY 78

Query: 133 VGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYAD 192
            GP + V I  ++DK +L PG  + +  + ++++ +L    DP V   +V + P  +Y D
Sbjct: 79  NGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYND 138

Query: 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT 252
           IGGL  Q+QE++EA+ELPL HPEL+E++GI PPKGV+LYG PG GKTL+AKA+A+  +AT
Sbjct: 139 IGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKAIAHEVNAT 198

Query: 253 FLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312
           F+RVVGSEL++KY+G+G +LV ELF +A + +P+I+FIDEIDA+G KR D  +GGERE+ 
Sbjct: 199 FIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRLDETTGGEREVN 258

Query: 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ 372
           RT+++LL ++DGFD RG+VKVI ATNR + LDPALLRPGR DR IE PLPD + R  I +
Sbjct: 259 RTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILK 318

Query: 373 IHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE 432
           +HT RM L                 G D++          + +T              + 
Sbjct: 319 VHTRRMKL----------------RGVDLRL--------IAELT--------------EG 340

Query: 433 FSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 475
            SGAD+KAI TEAG+ A+RERR  VT  DF KA +KV+  +K+
Sbjct: 341 ASGADLKAIATEAGMFAIRERRTYVTQEDFLKAIDKVLGNEKK 383


>sp|Q5JHS5|PAN_PYRKO Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis
           (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=pan PE=3
           SV=1
          Length = 397

 Score =  338 bits (868), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 182/402 (45%), Positives = 255/402 (63%), Gaps = 41/402 (10%)

Query: 73  RIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSS 132
           RI+   L       ++ERL   E +    R ++  LR  P   GN+ E++D+  AIV + 
Sbjct: 23  RIRQLELQVRTLEADKERL---ERELSRLRMEMSRLRQPPAFAGNVIEVLDDERAIVQNY 79

Query: 133 VGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYAD 192
            GP + V I  ++++D+L+PG  + +  + +++V LL  E DP V   +V + P  +Y D
Sbjct: 80  NGPRFVVRIAPWIERDKLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPKVTYND 139

Query: 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT 252
           IGGL+ Q+QE++EA+ELPL HPEL+E +GI+PPKGV+LYG PG GKTL+AKAVAN  +AT
Sbjct: 140 IGGLEKQLQELREAIELPLKHPELFEQVGIEPPKGVLLYGPPGCGKTLMAKAVANHVNAT 199

Query: 253 FLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312
           F+RVVGSEL++K++G+G +LV ELF +A + +P+I+FIDEIDA+G KR D  +GGERE+ 
Sbjct: 200 FIRVVGSELVRKFIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVN 259

Query: 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ 372
           RT+++LL ++DGFD RG+VKVI ATNR + LDPALLRPGR DR IE PLPD + R  I +
Sbjct: 260 RTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDYQGRLEILK 319

Query: 373 IHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE 432
           +HT +M L   V+L       +  SGA                                 
Sbjct: 320 VHTRKMNL-KGVDLRVIAEITEGASGA--------------------------------- 345

Query: 433 FSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKK 474
               D+KAI TEAG+ A+R+RR  VT  DF KA +KV+  +K
Sbjct: 346 ----DLKAIATEAGMFAIRDRRTYVTQDDFLKAVDKVIGSEK 383


>sp|Q0W257|PAN_UNCMA Proteasome-activating nucleotidase OS=Uncultured methanogenic
           archaeon RC-I GN=pan PE=3 SV=1
          Length = 417

 Score =  333 bits (855), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 167/368 (45%), Positives = 238/368 (64%), Gaps = 37/368 (10%)

Query: 103 SKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKV 162
           S++D L+  P+ VG + +++     I+ SS GP++ V    F++  ++ PG  + ++ + 
Sbjct: 71  SELDRLKTPPLIVGTILDVMANGKMIIKSSTGPKFVVNSSQFINSKEVYPGAKVALNQQS 130

Query: 163 LSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGI 222
           L+V+ +L    DP V  M+V  +P   Y  IGGL+AQI E+KE VELPL  PEL++ +GI
Sbjct: 131 LAVIEVLPTVKDPSVLGMEVVDSPEIDYQSIGGLEAQINELKETVELPLLKPELFQKVGI 190

Query: 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADD 282
           +PPKGV+LYG PGTGKTLLAKAVAN T ATF+R++GSEL+QKY+G+G ++VRELF +A +
Sbjct: 191 EPPKGVLLYGPPGTGKTLLAKAVANRTKATFIRIIGSELVQKYIGEGARMVRELFELAKE 250

Query: 283 LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 342
            SPSI+FIDEID++G KR D+ + G+RE+QRT+++LL ++DGFD RG+V+++ ATNR + 
Sbjct: 251 KSPSIIFIDEIDSIGAKRLDSITSGDREVQRTLVQLLAEMDGFDPRGNVRILAATNRPDI 310

Query: 343 LDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIK 402
           LDPALLRPGR DR I+ P+P  + R +I +IH  +M LADDV+L +  +  DE SG    
Sbjct: 311 LDPALLRPGRFDRMIKVPMPTAEAREQILKIHARKMNLADDVDLRKIALITDESSG---- 366

Query: 403 TRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 462
                                            AD+ AI  EAG+ A+R  R  V  +DF
Sbjct: 367 ---------------------------------ADLSAIVMEAGMFAIRNNRDVVDSSDF 393

Query: 463 KKAKEKVM 470
             A  KVM
Sbjct: 394 NAAVAKVM 401


>sp|A4G0S4|PAN_METM5 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
           (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1
          Length = 407

 Score =  333 bits (854), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 171/374 (45%), Positives = 246/374 (65%), Gaps = 38/374 (10%)

Query: 102 RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNK 161
           + ++D LR  P+ +G + + ++E  A+V SS GP + V +  FVD D + PG  + ++ +
Sbjct: 59  KRELDKLRIPPLILGTILDRVNERKAVVKSSTGPNFLVNLSQFVDPDDIVPGARVCLNQQ 118

Query: 162 VLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIG 221
            L++V +L  E D     M++E+ P  S+ DIGGL+ QI++IKE VELPL +PEL+E +G
Sbjct: 119 TLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVG 178

Query: 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVAD 281
           I PPKGV+LYG PGTGKTLLAKAVA  T+A+F+RVVGSEL++K++G+G KLVR++F++A 
Sbjct: 179 IVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAK 238

Query: 282 DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341
           + SP I+FIDEIDAV +KR ++ +GG+RE+QRT+++LL ++DGFDSRGDVK+I ATNR +
Sbjct: 239 EKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPD 298

Query: 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADI 401
            LDPA+LRPGR DR IE  +PD   R  I +IHT +M L                 G D+
Sbjct: 299 ILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNL----------------KGVDL 342

Query: 402 KTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 461
           +                      E     +   GAD+KA+CTEAG+ A+RE R  +   D
Sbjct: 343 R----------------------EVAKIAENMVGADLKAVCTEAGMFAIREEREFIKMDD 380

Query: 462 FKKAKEKVMFKKKE 475
           F++A  K+  KK++
Sbjct: 381 FREAITKITGKKEK 394


>sp|A9A916|PAN_METM6 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
           (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1
          Length = 407

 Score =  332 bits (852), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 171/374 (45%), Positives = 246/374 (65%), Gaps = 38/374 (10%)

Query: 102 RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNK 161
           + ++D LR  P+ +G + + ++E  A+V SS GP + V +  FVD + + PG  + ++ +
Sbjct: 59  KRELDKLRIPPLILGTILDRVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQ 118

Query: 162 VLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIG 221
            L++V +L  E D     M++E+ P  S+ DIGGL+ QI++IKE VELPL +PEL+E +G
Sbjct: 119 TLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVG 178

Query: 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVAD 281
           I PPKGV+LYG PGTGKTLLAKAVA  T+A+F+RVVGSEL++K++G+G KLVR++F++A 
Sbjct: 179 IVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAK 238

Query: 282 DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341
           + SP I+FIDEIDAV +KR ++ +GG+RE+QRT+++LL ++DGFDSRGDVK+I ATNR +
Sbjct: 239 EKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPD 298

Query: 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADI 401
            LDPA+LRPGR DR IE  +PD   R  I +IHT +M L                 G D+
Sbjct: 299 ILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNL----------------KGVDL 342

Query: 402 KTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 461
           +                      E     +   GAD+KA+CTEAG+ A+RE R  +   D
Sbjct: 343 R----------------------EVAKLAENMVGADLKAVCTEAGMFAIREEREFIKMDD 380

Query: 462 FKKAKEKVMFKKKE 475
           FK+A  K+  KK++
Sbjct: 381 FKEAISKITGKKEK 394


>sp|Q6LWR0|PAN_METMP Proteasome-activating nucleotidase OS=Methanococcus maripaludis
           (strain S2 / LL) GN=pan PE=3 SV=1
          Length = 407

 Score =  332 bits (852), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 174/389 (44%), Positives = 255/389 (65%), Gaps = 39/389 (10%)

Query: 87  NQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVD 146
           N+E ++ ++E  E  + ++D LR  P+ +G + + ++E  A+V SS GP + V +  FVD
Sbjct: 45  NRENVQIKKEN-EILKRELDKLRIPPLILGTILDKVNERKAVVKSSTGPNFLVNLSQFVD 103

Query: 147 KDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEA 206
            + + PG  + ++ + L++V +L  E D     M++E+ P  S+ DIGGL+ QI++IKE 
Sbjct: 104 PEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEV 163

Query: 207 VELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYL 266
           VELPL +PEL+E +GI PPKGV+LYG PGTGKTLLAKAVA  T+A+F+RVVGSEL++K++
Sbjct: 164 VELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFI 223

Query: 267 GDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD 326
           G+G KLVR++F++A + SP I+FIDEIDAV +KR ++ +GG+RE+QRT+++LL ++DGFD
Sbjct: 224 GEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFD 283

Query: 327 SRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNL 386
           SRGDVK+I ATNR + LDPA+LRPGR DR IE  +PD   R  I +IHT +M L      
Sbjct: 284 SRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNL------ 337

Query: 387 EEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAG 446
                      G D++                      E     +   GAD+KA+CTEAG
Sbjct: 338 ----------KGVDLR----------------------EVAKIAENMVGADLKAVCTEAG 365

Query: 447 LLALRERRMKVTHTDFKKAKEKVMFKKKE 475
           + A+RE R  +   DF++A  K+  KK++
Sbjct: 366 MFAIREEREFIKMDDFREAISKITGKKEK 394


>sp|A6UQT3|PAN_METVS Proteasome-activating nucleotidase OS=Methanococcus vannielii
           (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1
          Length = 407

 Score =  332 bits (851), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 178/380 (46%), Positives = 247/380 (65%), Gaps = 39/380 (10%)

Query: 102 RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNK 161
           + ++D LR  P+ +G + + ++E  A+V SS GP + V +  FV+ D + PG  + ++ +
Sbjct: 59  KRELDKLRIPPLILGTVLDRVNERKAVVKSSTGPNFLVNLSQFVEPDDIVPGARVCLNQQ 118

Query: 162 VLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIG 221
            L+VV +L  E D     M++E+ P   + DIGGL+ QI++IKE VELPL +PEL+E +G
Sbjct: 119 TLAVVEVLPKEKDYRAMAMELEEKPDILFGDIGGLNNQIRDIKEVVELPLKNPELFEKVG 178

Query: 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVAD 281
           I PPKGV+LYG PGTGKTLLAKAVA  T+A+F+RVVGSEL++K++G+G KLVR++F++A 
Sbjct: 179 IVPPKGVLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAK 238

Query: 282 DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341
           + SP I+FIDEIDAV +KR ++ +GG+RE+QRT+++LL ++DGFDSRGDVK+I ATNR +
Sbjct: 239 EKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPD 298

Query: 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADI 401
            LDPA+LRPGR DR IE   PD   R  IF+IHT +M +   V+L E     +   GAD 
Sbjct: 299 ILDPAILRPGRFDRIIEIAAPDEDGRLEIFKIHTDKMNIK-SVDLREIAKMAENMVGAD- 356

Query: 402 KTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 461
                                               IKA+CTEAG+ A+RE R  VT  D
Sbjct: 357 ------------------------------------IKAVCTEAGMFAIREGREYVTTKD 380

Query: 462 FKKAKEKVMFKKKEGVPEGL 481
           FK+A  KV   KKE   EG+
Sbjct: 381 FKEALLKVT-GKKEKSEEGI 399


>sp|A7I8B8|PAN_METB6 Proteasome-activating nucleotidase OS=Methanoregula boonei (strain
           6A8) GN=pan PE=3 SV=1
          Length = 436

 Score =  332 bits (850), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 174/368 (47%), Positives = 236/368 (64%), Gaps = 37/368 (10%)

Query: 102 RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNK 161
           +S+ + LR  P+ +G + +++D N  IV SS GP + V     V+ D ++PG    ++ +
Sbjct: 89  KSESEQLRSPPLIIGTVVDVVDANRVIVRSSAGPRFLVRSSPSVNPDDIKPGARCTLNQQ 148

Query: 162 VLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIG 221
            L++V LL    D  V  M++  +P E Y DIGGL  QI E++EAVELPL  PEL+  IG
Sbjct: 149 SLAIVELLPSSFDAQVYGMELVDSPQECYTDIGGLKEQINEVREAVELPLKRPELFTQIG 208

Query: 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVAD 281
           I+PPKGV+LYG PGTGKTLLAKAVA+ T+A F+RVVGSEL+QKY+G+G +LVRELF +A 
Sbjct: 209 IEPPKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELFDLAK 268

Query: 282 DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341
             +P+I+FIDEIDAVG  R +A++ G+RE+QRT+++LL  +DGF++RGDVK+I ATNRI+
Sbjct: 269 KKAPTIIFIDEIDAVGASRTEANTSGDREVQRTLMQLLAGMDGFETRGDVKIIGATNRID 328

Query: 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADI 401
            LD ALLRPGR DR IE PLPD + R  I ++HT  +T+ + VNL E             
Sbjct: 329 ILDKALLRPGRFDRIIEIPLPDEEGRLSILKVHTRTLTMEETVNLPEIA----------- 377

Query: 402 KTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 461
                          L +  N            GAD++AIC EAG+ A+R  R  +T  D
Sbjct: 378 --------------GLTEGKN------------GADLRAICMEAGMYAIRNERPAITRED 411

Query: 462 FKKAKEKV 469
           F  A EKV
Sbjct: 412 FLSAIEKV 419


>sp|A6VHR1|PAN_METM7 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
           (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1
          Length = 407

 Score =  331 bits (849), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 171/374 (45%), Positives = 246/374 (65%), Gaps = 38/374 (10%)

Query: 102 RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNK 161
           + ++D LR  P+ +G + + ++E  A+V SS GP + V +  FVD + + PG  + ++ +
Sbjct: 59  KRELDKLRIPPLILGTILDKVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQ 118

Query: 162 VLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIG 221
            L++V +L  E D     M++E+ P  S+ DIGGL+ QI++IKE VELPL +PEL+E +G
Sbjct: 119 TLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVG 178

Query: 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVAD 281
           I PPKGV+LYG PGTGKTLLAKAVA  T+A+F+RVVGSEL++K++G+G KLVR++F++A 
Sbjct: 179 IVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAK 238

Query: 282 DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341
           + SP I+FIDEIDAV +KR ++ +GG+RE+QRT+++LL ++DGFDSRGDVK+I ATNR +
Sbjct: 239 EKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPD 298

Query: 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADI 401
            LDPA+LRPGR DR IE  +PD   R  I +IHT +M L  +V+L E     +   GA  
Sbjct: 299 ILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNLK-NVDLREVAKLAENMVGA-- 355

Query: 402 KTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 461
                                              D+KA+CTEAG+ A+RE R  +   D
Sbjct: 356 -----------------------------------DLKAVCTEAGMFAIREEREFIKMDD 380

Query: 462 FKKAKEKVMFKKKE 475
           FK+A  K+  KK++
Sbjct: 381 FKEAISKITGKKEK 394


>sp|O18413|PRS8_DROME 26S protease regulatory subunit 8 OS=Drosophila melanogaster
           GN=Pros45 PE=1 SV=2
          Length = 405

 Score =  330 bits (846), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 179/414 (43%), Positives = 260/414 (62%), Gaps = 41/414 (9%)

Query: 66  LRLLKLERIKDYLLMEEEFVTNQERLKPQEE----KAEEDRSKVDDLRGSPMSVGNLEEL 121
            R   +++I++  L+  E   N  RL+ Q      K    R ++  L+     VG + + 
Sbjct: 19  FRSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKP 78

Query: 122 IDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMK 181
           +D+   +V      ++ V +   +D + + P C + + N+  ++  +L ++VDP+VS+M 
Sbjct: 79  MDKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMM 138

Query: 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLL 241
           VEK P  +Y  +GGLD QI+EIKE +ELP+ HPEL++ +GI  PKGV+LYG PGTGKTLL
Sbjct: 139 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLL 198

Query: 242 AKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRY 301
           A+AVA+ T  TF+RV GSEL+QK++G+G ++VRELF +A + +PSI+F+DEID++G+ R 
Sbjct: 199 ARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRI 258

Query: 302 DAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPL 361
           ++ SGG+ E+QRTMLELLNQLDGF++  ++KVI+ATNRI+ LDPALLRPGRIDRKIEFP 
Sbjct: 259 ESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPP 318

Query: 362 PDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDV 421
           P+ + R  I +IH+ +M L   +NL +     +   GA                      
Sbjct: 319 PNEEARLDILKIHSRKMNLTRGINLRKIA---ELMPGA---------------------- 353

Query: 422 NLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 475
                       SGA++K +CTEAG+ ALRERR+ VT  DF+ A  KVM K  E
Sbjct: 354 ------------SGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 395


>sp|P54814|PRS8_MANSE 26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1
          Length = 402

 Score =  327 bits (838), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 178/409 (43%), Positives = 257/409 (62%), Gaps = 41/409 (10%)

Query: 71  LERIKDYLLMEEEFVTNQERLKPQEE----KAEEDRSKVDDLRGSPMSVGNLEELIDENH 126
           + +I++  L+  E   N  RL+ Q      K    R ++  L+     VG + + +D+  
Sbjct: 21  ITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKK 80

Query: 127 AIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAP 186
            +V      ++ V +   VD + +   C + + N+  ++  +L ++VDP+VS+M VEK P
Sbjct: 81  VLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVP 140

Query: 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVA 246
             +Y  +GGLD QI+EIKE +ELP+ HPEL++ +GI  PKGV+LYG PGTGKTLLA+AVA
Sbjct: 141 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 200

Query: 247 NSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSG 306
           + T  TF+RV GSEL+QK++G+G ++VRELF +A + +PSI+F+DEID++G+ R ++ SG
Sbjct: 201 HHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSG 260

Query: 307 GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKT 366
           G+ E+QRTMLELLNQLDGF++  ++KVI+ATNRI+ LDPALLRPGRIDRKIEFP P+ + 
Sbjct: 261 GDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEA 320

Query: 367 RRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEF 426
           R  I +IH+ +M L   +NL +     +   GA                           
Sbjct: 321 RLDILKIHSRKMNLTRGINLRKIA---ELMPGA--------------------------- 350

Query: 427 VMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 475
                  SGA++K +CTEAG+ ALRERR+ VT  DF+ A  KVM K  E
Sbjct: 351 -------SGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSE 392


>sp|P62198|PRS8_RAT 26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5
           PE=1 SV=1
          Length = 406

 Score =  326 bits (835), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 169/361 (46%), Positives = 236/361 (65%), Gaps = 37/361 (10%)

Query: 115 VGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVD 174
           VG +   +D+   +V      ++ V +   +D + + P C + + N   ++  +L ++VD
Sbjct: 73  VGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVD 132

Query: 175 PMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEP 234
           P+VS+M VEK P  +Y  IGGLD QI+EIKE +ELP+ HPEL+E +GI  PKGV+LYG P
Sbjct: 133 PLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPP 192

Query: 235 GTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEID 294
           GTGKTLLA+AVA+ T  TF+RV GSEL+QK++G+G ++VRELF +A + +PSI+F+DEID
Sbjct: 193 GTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEID 252

Query: 295 AVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRID 354
           ++G+ R +  SGG+ E+QRTMLELLNQLDGF++  ++KVI+ATNRI+ LD ALLRPGRID
Sbjct: 253 SIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRID 312

Query: 355 RKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSR 414
           RKIEFP P+ + R  I +IH+ +M L   +NL                  R+I ++    
Sbjct: 313 RKIEFPPPNEEARLDILKIHSRKMNLTRGINL------------------RKIAELMPGA 354

Query: 415 MTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKK 474
                              SGA++K +CTEAG+ ALRERR+ VT  DF+ A  KVM K  
Sbjct: 355 -------------------SGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDS 395

Query: 475 E 475
           E
Sbjct: 396 E 396


>sp|P62197|PRS8_PIG 26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1
          Length = 406

 Score =  326 bits (835), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 169/361 (46%), Positives = 236/361 (65%), Gaps = 37/361 (10%)

Query: 115 VGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVD 174
           VG +   +D+   +V      ++ V +   +D + + P C + + N   ++  +L ++VD
Sbjct: 73  VGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVD 132

Query: 175 PMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEP 234
           P+VS+M VEK P  +Y  IGGLD QI+EIKE +ELP+ HPEL+E +GI  PKGV+LYG P
Sbjct: 133 PLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPP 192

Query: 235 GTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEID 294
           GTGKTLLA+AVA+ T  TF+RV GSEL+QK++G+G ++VRELF +A + +PSI+F+DEID
Sbjct: 193 GTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEID 252

Query: 295 AVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRID 354
           ++G+ R +  SGG+ E+QRTMLELLNQLDGF++  ++KVI+ATNRI+ LD ALLRPGRID
Sbjct: 253 SIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRID 312

Query: 355 RKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSR 414
           RKIEFP P+ + R  I +IH+ +M L   +NL                  R+I ++    
Sbjct: 313 RKIEFPPPNEEARLDILKIHSRKMNLTRGINL------------------RKIAELMPGA 354

Query: 415 MTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKK 474
                              SGA++K +CTEAG+ ALRERR+ VT  DF+ A  KVM K  
Sbjct: 355 -------------------SGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDS 395

Query: 475 E 475
           E
Sbjct: 396 E 396


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.137    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,277,512
Number of Sequences: 539616
Number of extensions: 8303188
Number of successful extensions: 37277
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 1709
Number of HSP's that attempted gapping in prelim test: 34212
Number of HSP's gapped (non-prelim): 3549
length of query: 483
length of database: 191,569,459
effective HSP length: 121
effective length of query: 362
effective length of database: 126,275,923
effective search space: 45711884126
effective search space used: 45711884126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)