Query 011553
Match_columns 483
No_of_seqs 526 out of 3956
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 02:38:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011553.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011553hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0726 26S proteasome regulat 100.0 6E-101 1E-105 722.6 31.7 440 1-483 1-440 (440)
2 COG1222 RPT1 ATP-dependent 26S 100.0 5.8E-82 1.3E-86 611.9 39.8 387 53-478 15-401 (406)
3 PTZ00361 26 proteosome regulat 100.0 1.4E-74 3E-79 596.6 40.6 438 1-483 1-438 (438)
4 KOG0727 26S proteasome regulat 100.0 1.8E-70 3.9E-75 507.6 30.2 380 55-474 22-401 (408)
5 KOG0728 26S proteasome regulat 100.0 5.9E-63 1.3E-67 457.1 31.0 344 96-476 52-395 (404)
6 KOG0652 26S proteasome regulat 100.0 2.5E-61 5.4E-66 448.6 27.8 344 97-477 56-420 (424)
7 PTZ00454 26S protease regulato 100.0 5.6E-55 1.2E-59 448.3 38.3 372 65-475 21-392 (398)
8 KOG0729 26S proteasome regulat 100.0 2.1E-56 4.6E-61 416.7 24.2 327 112-475 94-424 (435)
9 PRK03992 proteasome-activating 100.0 4.2E-51 9.2E-56 421.2 38.4 352 94-482 34-388 (389)
10 KOG0730 AAA+-type ATPase [Post 100.0 2E-51 4.3E-56 425.2 24.1 253 182-474 425-679 (693)
11 TIGR01242 26Sp45 26S proteasom 100.0 2E-49 4.4E-54 406.7 35.9 339 94-469 25-363 (364)
12 KOG0651 26S proteasome regulat 100.0 5.7E-51 1.2E-55 388.0 18.3 335 104-476 46-380 (388)
13 KOG0733 Nuclear AAA ATPase (VC 100.0 2.7E-49 6E-54 403.7 25.7 258 174-471 494-771 (802)
14 KOG0734 AAA+-type ATPase conta 100.0 3.4E-47 7.3E-52 383.0 21.0 247 185-472 298-544 (752)
15 KOG0736 Peroxisome assembly fa 100.0 1.4E-45 3.1E-50 384.8 23.0 255 179-472 660-935 (953)
16 KOG0738 AAA+-type ATPase [Post 100.0 3.7E-45 8.1E-50 357.2 21.0 249 182-472 203-472 (491)
17 KOG0731 AAA+-type ATPase conta 100.0 3.3E-44 7.1E-49 382.1 25.3 253 183-472 303-556 (774)
18 COG1223 Predicted ATPase (AAA+ 100.0 3.1E-43 6.7E-48 327.7 22.2 304 120-483 64-368 (368)
19 KOG0733 Nuclear AAA ATPase (VC 100.0 7.1E-43 1.5E-47 356.8 21.2 224 187-452 186-414 (802)
20 COG0465 HflB ATP-dependent Zn 100.0 2.1E-42 4.6E-47 362.9 22.5 252 184-473 143-394 (596)
21 TIGR03689 pup_AAA proteasome A 100.0 1.4E-41 3E-46 355.7 27.7 347 115-472 109-481 (512)
22 COG0464 SpoVK ATPases of the A 100.0 2.7E-39 5.9E-44 344.8 24.5 248 184-469 235-483 (494)
23 KOG0739 AAA+-type ATPase [Post 100.0 3E-40 6.4E-45 312.8 13.3 214 182-401 124-339 (439)
24 KOG0735 AAA+-type ATPase [Post 100.0 6.4E-39 1.4E-43 332.3 24.2 226 187-452 663-888 (952)
25 TIGR01243 CDC48 AAA family ATP 100.0 8.3E-39 1.8E-43 355.1 27.0 250 184-472 446-713 (733)
26 KOG0737 AAA+-type ATPase [Post 100.0 6.7E-39 1.4E-43 313.5 19.5 241 188-470 89-360 (386)
27 TIGR01241 FtsH_fam ATP-depende 100.0 3.2E-38 6.8E-43 336.0 26.3 253 182-472 46-298 (495)
28 CHL00176 ftsH cell division pr 100.0 3.6E-37 7.8E-42 332.3 25.3 251 184-472 176-426 (638)
29 CHL00195 ycf46 Ycf46; Provisio 100.0 2.7E-36 5.9E-41 316.3 25.5 243 186-471 223-465 (489)
30 PRK10733 hflB ATP-dependent me 100.0 7.2E-35 1.6E-39 317.5 26.4 250 185-472 146-395 (644)
31 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.4E-34 3.1E-39 327.1 23.1 221 208-473 1613-1881(2281)
32 KOG0740 AAA+-type ATPase [Post 100.0 1.1E-34 2.3E-39 293.6 16.6 252 182-475 144-410 (428)
33 KOG0730 AAA+-type ATPase [Post 100.0 3.4E-33 7.4E-38 289.9 20.7 237 186-470 180-417 (693)
34 KOG0741 AAA+-type ATPase [Post 100.0 4.8E-34 1E-38 288.0 13.3 254 183-470 211-491 (744)
35 COG0466 Lon ATP-dependent Lon 100.0 6.9E-35 1.5E-39 305.0 7.1 372 49-472 179-587 (782)
36 KOG0732 AAA+-type ATPase conta 100.0 1.6E-33 3.4E-38 307.6 17.9 250 184-472 258-528 (1080)
37 TIGR01243 CDC48 AAA family ATP 100.0 5.3E-32 1.2E-36 300.7 25.2 246 185-470 172-436 (733)
38 KOG2004 Mitochondrial ATP-depe 100.0 1.9E-31 4.1E-36 277.5 11.9 307 50-379 267-600 (906)
39 PLN00020 ribulose bisphosphate 100.0 3.7E-30 8E-35 254.8 20.1 171 220-395 143-330 (413)
40 TIGR00763 lon ATP-dependent pr 99.9 1.3E-27 2.9E-32 266.3 9.7 305 49-376 176-506 (775)
41 PRK10787 DNA-binding ATP-depen 99.9 3E-26 6.5E-31 253.4 9.6 303 50-376 179-507 (784)
42 CHL00181 cbbX CbbX; Provisiona 99.9 1.8E-21 3.8E-26 192.8 20.3 178 189-379 21-213 (287)
43 KOG0742 AAA+-type ATPase [Post 99.9 2.7E-21 5.8E-26 190.9 17.3 258 185-470 349-613 (630)
44 TIGR02880 cbbX_cfxQ probable R 99.9 5.5E-21 1.2E-25 189.3 19.2 176 191-379 22-212 (284)
45 TIGR02881 spore_V_K stage V sp 99.9 2.2E-20 4.8E-25 183.2 20.7 177 189-379 4-195 (261)
46 PF00004 AAA: ATPase family as 99.9 4.6E-21 1E-25 167.2 13.2 130 228-361 1-132 (132)
47 KOG0744 AAA+-type ATPase [Post 99.9 1.3E-21 2.7E-26 188.4 10.1 261 189-474 140-419 (423)
48 KOG0743 AAA+-type ATPase [Post 99.8 2.1E-20 4.5E-25 188.6 16.5 184 187-378 197-386 (457)
49 KOG0736 Peroxisome assembly fa 99.8 1.7E-19 3.7E-24 190.1 19.4 256 194-476 404-660 (953)
50 PF05496 RuvB_N: Holliday junc 99.8 8.4E-19 1.8E-23 163.9 17.6 171 183-382 16-199 (233)
51 KOG0735 AAA+-type ATPase [Post 99.8 1E-18 2.2E-23 182.7 18.3 231 191-469 408-648 (952)
52 PRK00080 ruvB Holliday junctio 99.8 5.6E-18 1.2E-22 171.7 22.0 222 182-469 16-250 (328)
53 TIGR00635 ruvB Holliday juncti 99.8 5.2E-18 1.1E-22 170.1 21.2 214 189-468 2-228 (305)
54 TIGR02902 spore_lonB ATP-depen 99.8 2.2E-18 4.7E-23 184.5 17.0 224 180-471 54-334 (531)
55 TIGR02639 ClpA ATP-dependent C 99.8 2.6E-18 5.7E-23 190.9 17.7 169 184-377 175-360 (731)
56 COG2255 RuvB Holliday junction 99.8 4.6E-17 1E-21 155.1 19.4 168 186-382 21-201 (332)
57 COG0464 SpoVK ATPases of the A 99.8 3.6E-17 7.8E-22 174.8 21.0 222 209-472 2-229 (494)
58 COG2256 MGS1 ATPase related to 99.8 3.9E-17 8.5E-22 162.5 18.5 151 184-375 17-176 (436)
59 PRK11034 clpA ATP-dependent Cl 99.7 3E-17 6.4E-22 180.9 17.8 178 185-387 180-374 (758)
60 PRK14956 DNA polymerase III su 99.7 7.9E-17 1.7E-21 167.3 18.8 188 181-409 8-224 (484)
61 PRK04195 replication factor C 99.7 1.7E-16 3.7E-21 168.7 20.4 196 179-410 2-205 (482)
62 PRK12323 DNA polymerase III su 99.7 5.8E-17 1.3E-21 172.2 15.9 164 181-381 6-202 (700)
63 PRK07003 DNA polymerase III su 99.7 1.4E-16 3E-21 171.3 18.9 178 181-395 6-212 (830)
64 PLN03025 replication factor C 99.7 5.9E-16 1.3E-20 156.3 22.1 247 180-471 2-269 (319)
65 PRK14962 DNA polymerase III su 99.7 2.5E-16 5.4E-21 165.7 19.6 187 182-409 5-220 (472)
66 PRK14961 DNA polymerase III su 99.7 6.8E-16 1.5E-20 158.4 21.1 169 181-380 6-196 (363)
67 PRK14960 DNA polymerase III su 99.7 3.2E-16 6.8E-21 167.0 18.6 175 182-393 6-209 (702)
68 PRK13342 recombination factor 99.7 4.8E-16 1E-20 162.3 19.3 155 182-377 3-166 (413)
69 PRK14958 DNA polymerase III su 99.7 2.4E-16 5.1E-21 167.5 16.9 220 181-443 6-254 (509)
70 PRK12402 replication factor C 99.7 1.3E-15 2.9E-20 154.5 21.8 196 179-410 3-229 (337)
71 PRK07994 DNA polymerase III su 99.7 6.9E-16 1.5E-20 166.4 19.0 162 182-380 7-196 (647)
72 PRK06645 DNA polymerase III su 99.7 7.5E-16 1.6E-20 162.8 18.6 171 180-381 10-206 (507)
73 TIGR03345 VI_ClpV1 type VI sec 99.7 7.6E-16 1.6E-20 172.8 19.0 169 184-378 180-366 (852)
74 PRK14964 DNA polymerase III su 99.7 2.8E-15 6E-20 157.4 20.5 175 182-393 4-207 (491)
75 PRK08691 DNA polymerase III su 99.7 1.9E-15 4.1E-20 162.4 19.5 170 181-381 6-197 (709)
76 PRK14949 DNA polymerase III su 99.7 1.8E-15 3.9E-20 165.6 19.3 168 182-380 7-196 (944)
77 KOG0989 Replication factor C, 99.7 8.3E-16 1.8E-20 148.0 14.6 196 179-413 24-236 (346)
78 PRK13407 bchI magnesium chelat 99.7 9E-16 1.9E-20 154.4 15.4 257 186-474 3-311 (334)
79 TIGR02928 orc1/cdc6 family rep 99.7 3.6E-15 7.8E-20 153.3 20.2 226 191-470 15-275 (365)
80 PHA02544 44 clamp loader, smal 99.7 1.2E-15 2.7E-20 153.7 14.9 163 179-374 9-172 (316)
81 PRK14951 DNA polymerase III su 99.7 4.7E-15 1E-19 159.6 19.9 164 181-381 6-202 (618)
82 CHL00081 chlI Mg-protoporyphyr 99.7 3.7E-15 8E-20 150.3 17.7 259 185-475 11-328 (350)
83 PRK14963 DNA polymerase III su 99.7 4.7E-15 1E-19 157.3 19.3 217 183-443 6-250 (504)
84 PRK00411 cdc6 cell division co 99.6 1.4E-14 3.1E-19 150.4 22.1 224 191-470 30-283 (394)
85 PRK05563 DNA polymerase III su 99.6 9.4E-15 2E-19 157.3 21.3 186 183-409 8-222 (559)
86 TIGR02640 gas_vesic_GvpN gas v 99.6 2.2E-14 4.7E-19 140.8 22.0 198 225-472 21-260 (262)
87 PRK00440 rfc replication facto 99.6 9.3E-15 2E-19 147.2 19.6 222 178-444 4-237 (319)
88 KOG2028 ATPase related to the 99.6 3.7E-15 8E-20 146.0 15.5 153 183-376 130-295 (554)
89 PRK07764 DNA polymerase III su 99.6 1E-14 2.3E-19 162.0 20.2 164 181-381 5-198 (824)
90 PRK10865 protein disaggregatio 99.6 2.4E-15 5.2E-20 169.2 15.1 171 184-380 171-359 (857)
91 PRK14952 DNA polymerase III su 99.6 9.3E-15 2E-19 156.8 18.9 220 183-443 5-254 (584)
92 PRK13341 recombination factor 99.6 1.1E-14 2.3E-19 160.1 19.7 155 181-376 18-182 (725)
93 PRK14969 DNA polymerase III su 99.6 5.6E-15 1.2E-19 157.9 16.9 163 182-381 7-197 (527)
94 PRK14957 DNA polymerase III su 99.6 1.1E-14 2.3E-19 155.0 18.7 188 181-409 6-222 (546)
95 TIGR03346 chaperone_ClpB ATP-d 99.6 6.7E-15 1.5E-19 166.1 18.1 173 184-382 166-356 (852)
96 TIGR00390 hslU ATP-dependent p 99.6 1E-14 2.2E-19 148.4 16.6 179 192-372 13-343 (441)
97 PRK14959 DNA polymerase III su 99.6 1.3E-14 2.8E-19 155.4 17.9 188 181-409 6-222 (624)
98 PRK00149 dnaA chromosomal repl 99.6 2.8E-14 6E-19 150.7 20.3 170 186-381 117-299 (450)
99 CHL00095 clpC Clp protease ATP 99.6 1.1E-14 2.5E-19 163.8 17.5 164 185-374 173-353 (821)
100 PRK08451 DNA polymerase III su 99.6 2.3E-14 5E-19 151.8 18.5 220 181-443 4-252 (535)
101 TIGR00362 DnaA chromosomal rep 99.6 3.7E-14 8.1E-19 147.9 19.9 211 225-470 136-358 (405)
102 TIGR02030 BchI-ChlI magnesium 99.6 2E-14 4.4E-19 144.9 17.1 255 189-475 2-315 (337)
103 TIGR02397 dnaX_nterm DNA polym 99.6 8.3E-14 1.8E-18 142.5 21.8 164 181-381 4-195 (355)
104 PRK05896 DNA polymerase III su 99.6 3.5E-14 7.6E-19 151.3 19.3 163 180-379 5-195 (605)
105 PTZ00112 origin recognition co 99.6 2.1E-14 4.6E-19 155.2 17.6 165 191-378 755-952 (1164)
106 PRK05201 hslU ATP-dependent pr 99.6 6.6E-15 1.4E-19 149.9 13.0 179 192-372 16-345 (443)
107 PRK07133 DNA polymerase III su 99.6 2.4E-14 5.2E-19 155.4 18.0 171 180-381 7-196 (725)
108 PRK07940 DNA polymerase III su 99.6 1.8E-14 3.9E-19 148.4 15.7 180 189-399 3-209 (394)
109 PRK05342 clpX ATP-dependent pr 99.6 3.2E-14 6.9E-19 147.3 17.6 128 193-320 73-212 (412)
110 PRK14953 DNA polymerase III su 99.6 3.8E-14 8.2E-19 149.9 18.2 171 181-382 6-198 (486)
111 PRK14965 DNA polymerase III su 99.6 8.4E-14 1.8E-18 150.6 21.3 176 182-394 7-211 (576)
112 PRK08903 DnaA regulatory inact 99.6 1.6E-13 3.5E-18 131.8 20.8 204 184-467 11-224 (227)
113 PRK14970 DNA polymerase III su 99.6 3.2E-14 7E-19 146.4 17.0 195 180-409 6-211 (367)
114 PRK09111 DNA polymerase III su 99.6 6.2E-14 1.4E-18 151.2 19.0 171 181-382 14-211 (598)
115 PRK06305 DNA polymerase III su 99.6 7.2E-14 1.6E-18 146.9 19.0 188 182-410 8-225 (451)
116 TIGR03420 DnaA_homol_Hda DnaA 99.6 1E-13 2.3E-18 132.7 18.5 203 188-466 12-225 (226)
117 TIGR02903 spore_lon_C ATP-depe 99.6 1.5E-13 3.3E-18 149.6 21.5 167 185-378 148-369 (615)
118 PRK11034 clpA ATP-dependent Cl 99.6 2.9E-14 6.3E-19 157.4 15.7 165 192-377 459-668 (758)
119 PRK06893 DNA replication initi 99.6 1E-13 2.3E-18 133.3 17.3 181 226-466 40-227 (229)
120 PRK14955 DNA polymerase III su 99.6 9.1E-14 2E-18 144.3 17.9 167 182-379 7-203 (397)
121 PRK14086 dnaA chromosomal repl 99.6 2.3E-13 5E-18 145.2 21.1 162 226-403 315-487 (617)
122 PRK06647 DNA polymerase III su 99.5 2.4E-13 5.1E-18 146.1 19.7 181 182-393 7-210 (563)
123 PRK08084 DNA replication initi 99.5 5.6E-13 1.2E-17 128.7 20.4 209 184-467 15-234 (235)
124 KOG0991 Replication factor C, 99.5 2.7E-13 5.9E-18 125.8 17.2 221 179-445 15-249 (333)
125 PRK14088 dnaA chromosomal repl 99.5 2.6E-13 5.7E-18 142.4 19.4 144 226-385 131-286 (440)
126 PRK13531 regulatory ATPase Rav 99.5 2.1E-13 4.5E-18 141.5 18.0 238 192-472 21-286 (498)
127 TIGR02442 Cob-chelat-sub cobal 99.5 1.7E-13 3.7E-18 149.9 18.5 251 189-475 2-310 (633)
128 TIGR02639 ClpA ATP-dependent C 99.5 1.6E-13 3.4E-18 152.9 18.3 166 191-377 454-664 (731)
129 COG3829 RocR Transcriptional r 99.5 1E-14 2.2E-19 150.6 8.2 159 185-369 239-424 (560)
130 COG1474 CDC6 Cdc6-related prot 99.5 2.9E-13 6.2E-18 138.2 18.0 219 193-470 19-266 (366)
131 PRK14948 DNA polymerase III su 99.5 1.1E-12 2.3E-17 142.6 23.1 167 182-379 7-197 (620)
132 TIGR00382 clpX endopeptidase C 99.5 2.2E-13 4.7E-18 140.4 16.9 147 193-339 79-247 (413)
133 PRK14954 DNA polymerase III su 99.5 5.2E-13 1.1E-17 144.3 20.3 168 182-380 7-204 (620)
134 PRK08727 hypothetical protein; 99.5 2.4E-12 5.3E-17 124.1 21.2 127 226-377 42-177 (233)
135 COG1224 TIP49 DNA helicase TIP 99.5 9.1E-13 2E-17 129.3 17.5 132 284-471 291-434 (450)
136 PRK14971 DNA polymerase III su 99.5 1.5E-12 3.2E-17 141.5 21.0 187 181-408 7-223 (614)
137 PF05673 DUF815: Protein of un 99.5 1.6E-12 3.5E-17 123.4 18.6 169 182-382 18-214 (249)
138 COG0542 clpA ATP-binding subun 99.5 1.9E-13 4.2E-18 148.3 13.8 167 191-378 491-708 (786)
139 PRK14950 DNA polymerase III su 99.5 1.5E-12 3.2E-17 141.5 20.2 181 182-393 7-211 (585)
140 TIGR01650 PD_CobS cobaltochela 99.5 5.5E-13 1.2E-17 132.7 15.3 139 225-377 64-235 (327)
141 PRK12422 chromosomal replicati 99.5 2.4E-12 5.2E-17 134.9 20.8 144 226-385 142-294 (445)
142 COG0714 MoxR-like ATPases [Gen 99.5 2E-12 4.2E-17 131.2 19.6 237 193-472 26-299 (329)
143 smart00350 MCM minichromosome 99.5 1.1E-12 2.5E-17 140.2 18.5 258 192-471 204-506 (509)
144 TIGR00368 Mg chelatase-related 99.5 9E-13 2E-17 139.6 16.6 233 188-467 189-497 (499)
145 PRK14087 dnaA chromosomal repl 99.5 3.1E-12 6.6E-17 134.6 19.9 137 226-379 142-292 (450)
146 cd00009 AAA The AAA+ (ATPases 99.5 1.3E-12 2.9E-17 114.5 14.6 140 195-360 2-150 (151)
147 PRK05642 DNA replication initi 99.5 7.9E-12 1.7E-16 120.6 20.9 180 225-466 45-232 (234)
148 PF00308 Bac_DnaA: Bacterial d 99.5 3E-12 6.6E-17 122.2 17.3 170 186-383 3-187 (219)
149 COG2812 DnaX DNA polymerase II 99.5 8.7E-13 1.9E-17 138.3 14.6 191 183-404 8-220 (515)
150 TIGR03345 VI_ClpV1 type VI sec 99.4 2.5E-12 5.5E-17 144.6 18.7 165 191-377 566-782 (852)
151 COG2204 AtoC Response regulato 99.4 8.6E-13 1.9E-17 136.5 13.1 154 188-369 138-319 (464)
152 TIGR00764 lon_rel lon-related 99.4 3.5E-12 7.5E-17 138.6 18.3 146 287-472 220-394 (608)
153 PRK06620 hypothetical protein; 99.4 7.9E-12 1.7E-16 118.8 17.9 197 185-466 10-213 (214)
154 TIGR03346 chaperone_ClpB ATP-d 99.4 5.9E-12 1.3E-16 142.4 19.8 166 190-376 564-777 (852)
155 COG3604 FhlA Transcriptional r 99.4 6.1E-13 1.3E-17 135.9 9.5 155 187-369 219-401 (550)
156 TIGR02031 BchD-ChlD magnesium 99.4 8.9E-12 1.9E-16 135.2 18.8 222 226-475 17-264 (589)
157 CHL00095 clpC Clp protease ATP 99.4 4.3E-12 9.4E-17 143.0 16.2 166 191-377 509-734 (821)
158 PRK09862 putative ATP-dependen 99.4 4.7E-12 1E-16 133.6 14.9 235 188-468 188-491 (506)
159 PRK10865 protein disaggregatio 99.4 1.4E-11 3E-16 139.0 19.5 168 189-377 566-781 (857)
160 TIGR02329 propionate_PrpR prop 99.4 2.6E-12 5.6E-17 137.1 10.9 162 188-377 209-403 (526)
161 PRK15424 propionate catabolism 99.4 4.3E-12 9.4E-17 135.3 12.1 161 188-376 216-417 (538)
162 COG0593 DnaA ATPase involved i 99.3 7.1E-11 1.5E-15 120.7 19.8 162 225-403 113-285 (408)
163 TIGR02974 phageshock_pspF psp 99.3 3.4E-12 7.5E-17 129.1 9.7 149 193-369 1-177 (329)
164 KOG1969 DNA replication checkp 99.3 5.9E-11 1.3E-15 125.8 18.8 209 179-412 259-515 (877)
165 PRK07471 DNA polymerase III su 99.3 2.8E-11 6E-16 123.8 15.9 159 186-375 14-213 (365)
166 PRK09087 hypothetical protein; 99.3 6.8E-11 1.5E-15 113.4 17.7 173 226-469 45-222 (226)
167 PHA02244 ATPase-like protein 99.3 5.9E-11 1.3E-15 119.5 17.7 131 225-371 119-269 (383)
168 TIGR01817 nifA Nif-specific re 99.3 7.8E-12 1.7E-16 135.0 12.1 217 186-463 191-439 (534)
169 PRK09112 DNA polymerase III su 99.3 1.9E-10 4.1E-15 117.1 21.5 159 186-375 18-213 (351)
170 COG1220 HslU ATP-dependent pro 99.3 3.2E-11 6.9E-16 117.7 14.4 85 286-372 252-346 (444)
171 PRK05564 DNA polymerase III su 99.3 3.2E-11 7E-16 121.5 14.7 153 189-376 2-166 (313)
172 PRK11608 pspF phage shock prot 99.3 2.1E-11 4.5E-16 123.4 13.2 152 190-369 5-184 (326)
173 PRK11388 DNA-binding transcrip 99.3 1.6E-11 3.5E-16 135.4 13.3 155 187-369 321-500 (638)
174 PRK10820 DNA-binding transcrip 99.3 1.1E-11 2.4E-16 132.9 11.3 158 184-369 197-382 (520)
175 TIGR03015 pepcterm_ATPase puta 99.3 1E-10 2.2E-15 115.0 17.0 196 227-470 45-267 (269)
176 PF00158 Sigma54_activat: Sigm 99.3 1.1E-11 2.3E-16 113.4 9.3 122 193-339 1-143 (168)
177 PF01078 Mg_chelatase: Magnesi 99.3 3.9E-12 8.5E-17 118.4 6.4 146 189-365 1-205 (206)
178 COG1221 PspF Transcriptional r 99.3 1.7E-11 3.8E-16 124.8 11.0 153 187-368 74-253 (403)
179 PRK05022 anaerobic nitric oxid 99.3 1.3E-11 2.9E-16 132.2 10.6 153 189-369 185-365 (509)
180 COG2607 Predicted ATPase (AAA+ 99.3 5.2E-10 1.1E-14 104.8 19.6 169 184-382 53-246 (287)
181 PF07728 AAA_5: AAA domain (dy 99.3 1.1E-11 2.5E-16 109.4 7.4 113 227-353 1-139 (139)
182 KOG1942 DNA helicase, TBP-inte 99.3 2.3E-10 5E-15 109.7 16.6 134 284-473 296-442 (456)
183 PRK04132 replication factor C 99.3 2.4E-10 5.2E-15 126.8 19.0 211 228-470 567-800 (846)
184 PF07724 AAA_2: AAA domain (Cd 99.2 1E-11 2.3E-16 113.8 6.3 113 226-340 4-130 (171)
185 PRK07399 DNA polymerase III su 99.2 4.3E-10 9.3E-15 113.0 18.0 155 189-375 2-195 (314)
186 PRK11331 5-methylcytosine-spec 99.2 1.7E-10 3.6E-15 119.2 15.2 147 190-364 174-361 (459)
187 TIGR00678 holB DNA polymerase 99.2 3.2E-10 7E-15 105.6 15.2 128 223-374 12-167 (188)
188 COG0606 Predicted ATPase with 99.2 8E-12 1.7E-16 127.8 4.7 234 187-468 175-484 (490)
189 COG1239 ChlI Mg-chelatase subu 99.2 2.7E-10 5.8E-15 115.3 15.5 254 188-474 14-327 (423)
190 COG0470 HolB ATPase involved i 99.2 9.1E-11 2E-15 118.3 11.9 149 192-372 2-178 (325)
191 PRK15429 formate hydrogenlyase 99.2 1E-10 2.2E-15 129.9 13.3 154 188-369 373-554 (686)
192 KOG0990 Replication factor C, 99.2 2E-10 4.4E-15 111.7 13.5 229 179-443 29-270 (360)
193 COG0542 clpA ATP-binding subun 99.2 7.1E-10 1.5E-14 120.9 19.1 170 184-378 163-349 (786)
194 smart00382 AAA ATPases associa 99.2 1.6E-10 3.4E-15 100.3 11.4 126 225-362 2-147 (148)
195 PRK05707 DNA polymerase III su 99.2 1.2E-09 2.6E-14 110.3 19.3 131 223-375 20-178 (328)
196 TIGR00602 rad24 checkpoint pro 99.2 2.8E-10 6.1E-15 123.2 15.6 206 179-411 72-327 (637)
197 KOG2035 Replication factor C, 99.2 9.9E-10 2.2E-14 104.8 17.2 188 180-407 2-228 (351)
198 PF06068 TIP49: TIP49 C-termin 99.2 4.9E-10 1.1E-14 111.9 14.8 77 285-381 279-367 (398)
199 PRK08058 DNA polymerase III su 99.2 1.8E-10 3.9E-15 116.7 12.0 149 189-373 3-180 (329)
200 PRK13765 ATP-dependent proteas 99.1 1.6E-09 3.5E-14 117.7 18.1 146 286-468 228-399 (637)
201 PF05621 TniB: Bacterial TniB 99.1 1.6E-09 3.6E-14 106.1 16.3 214 197-465 43-285 (302)
202 smart00763 AAA_PrkA PrkA AAA d 99.1 8.2E-10 1.8E-14 111.3 14.1 166 190-377 49-329 (361)
203 KOG0745 Putative ATP-dependent 99.1 1.9E-09 4E-14 108.6 16.3 95 226-320 227-330 (564)
204 PTZ00111 DNA replication licen 99.1 2.4E-09 5.1E-14 118.5 18.3 167 192-375 451-657 (915)
205 COG1219 ClpX ATP-dependent pro 99.1 1.6E-09 3.4E-14 105.3 13.1 95 226-320 98-201 (408)
206 TIGR02915 PEP_resp_reg putativ 99.1 3.1E-10 6.7E-15 119.9 8.9 153 189-369 137-317 (445)
207 PF13177 DNA_pol3_delta2: DNA 99.1 1E-09 2.3E-14 99.8 11.0 134 195-362 1-161 (162)
208 PF07726 AAA_3: ATPase family 99.1 1.7E-10 3.7E-15 99.1 5.3 112 227-354 1-130 (131)
209 PRK10923 glnG nitrogen regulat 99.0 9.4E-10 2E-14 117.0 10.7 218 189-466 136-385 (469)
210 PRK06871 DNA polymerase III su 99.0 3.5E-09 7.6E-14 106.4 13.4 144 196-374 7-178 (325)
211 KOG2680 DNA helicase TIP49, TB 99.0 1.8E-08 4E-13 97.2 17.0 135 284-474 288-434 (454)
212 PRK11361 acetoacetate metaboli 99.0 2.9E-09 6.3E-14 112.8 12.6 152 190-369 142-321 (457)
213 PRK13406 bchD magnesium chelat 99.0 6.8E-09 1.5E-13 112.0 14.3 205 226-475 26-256 (584)
214 PRK06964 DNA polymerase III su 99.0 3.6E-09 7.8E-14 107.0 10.9 133 223-374 19-203 (342)
215 PRK07993 DNA polymerase III su 98.9 6.2E-09 1.3E-13 105.4 12.4 144 196-373 7-178 (334)
216 KOG2227 Pre-initiation complex 98.9 2.1E-08 4.5E-13 102.3 15.7 223 191-470 150-416 (529)
217 PRK08769 DNA polymerase III su 98.9 9.2E-09 2E-13 103.2 12.9 147 196-373 9-183 (319)
218 PRK15115 response regulator Gl 98.9 8.4E-09 1.8E-13 108.9 13.3 147 192-369 135-312 (444)
219 TIGR01818 ntrC nitrogen regula 98.9 3.1E-09 6.8E-14 112.8 9.9 217 191-466 134-381 (463)
220 COG3283 TyrR Transcriptional r 98.9 1.4E-08 3E-13 100.2 13.1 155 185-369 198-377 (511)
221 PRK06090 DNA polymerase III su 98.9 1.3E-08 2.9E-13 102.0 13.3 145 195-373 7-178 (319)
222 PRK08116 hypothetical protein; 98.9 9.3E-09 2E-13 101.2 11.3 123 225-364 114-251 (268)
223 PF14532 Sigma54_activ_2: Sigm 98.9 2.7E-09 5.9E-14 94.3 6.7 105 195-339 2-109 (138)
224 KOG1514 Origin recognition com 98.9 3.4E-08 7.4E-13 105.0 15.8 195 227-472 424-658 (767)
225 KOG0741 AAA+-type ATPase [Post 98.9 5.7E-09 1.2E-13 107.3 9.2 142 225-372 538-683 (744)
226 PF03215 Rad17: Rad17 cell cyc 98.9 4E-08 8.7E-13 104.7 15.9 210 179-413 7-269 (519)
227 KOG1051 Chaperone HSP104 and r 98.8 2.5E-08 5.4E-13 110.3 13.5 127 192-339 563-710 (898)
228 PRK07952 DNA replication prote 98.8 3.4E-08 7.3E-13 95.5 12.1 121 226-363 100-235 (244)
229 PRK08181 transposase; Validate 98.8 4.7E-08 1E-12 95.9 13.1 127 225-369 106-249 (269)
230 PRK08699 DNA polymerase III su 98.8 1.8E-08 3.9E-13 101.7 10.4 131 223-373 19-183 (325)
231 PRK12377 putative replication 98.8 4.4E-08 9.5E-13 95.0 12.2 120 195-340 82-206 (248)
232 PF00493 MCM: MCM2/3/5 family 98.8 3.8E-09 8.2E-14 107.1 4.0 259 192-471 25-328 (331)
233 PRK06835 DNA replication prote 98.8 8.7E-08 1.9E-12 96.7 13.4 124 225-365 183-320 (329)
234 PF13173 AAA_14: AAA domain 98.8 6E-08 1.3E-12 84.5 10.6 118 226-366 3-126 (128)
235 KOG0480 DNA replication licens 98.8 7.6E-08 1.7E-12 101.1 12.8 261 190-472 344-646 (764)
236 PRK10365 transcriptional regul 98.7 2.1E-08 4.6E-13 105.7 8.4 150 192-369 140-317 (441)
237 COG1241 MCM2 Predicted ATPase 98.7 1.5E-07 3.3E-12 102.0 14.0 256 191-472 286-595 (682)
238 PRK06526 transposase; Provisio 98.7 8.4E-08 1.8E-12 93.6 8.9 101 224-340 97-201 (254)
239 KOG0478 DNA replication licens 98.6 2.3E-07 5.1E-12 98.2 11.6 253 193-470 431-725 (804)
240 COG1484 DnaC DNA replication p 98.6 3.8E-07 8.2E-12 89.0 11.6 118 195-340 87-209 (254)
241 PF01695 IstB_IS21: IstB-like 98.6 9.3E-08 2E-12 88.3 6.8 100 224-339 46-149 (178)
242 PRK05917 DNA polymerase III su 98.6 3.9E-07 8.4E-12 89.9 11.5 121 223-362 17-154 (290)
243 PF01637 Arch_ATPase: Archaeal 98.6 3.4E-07 7.4E-12 87.2 10.9 161 194-378 2-207 (234)
244 PRK09183 transposase/IS protei 98.6 2.6E-07 5.6E-12 90.5 10.0 101 225-340 102-206 (259)
245 COG3284 AcoR Transcriptional a 98.6 1E-07 2.2E-12 100.9 7.3 128 225-369 336-490 (606)
246 PRK08939 primosomal protein Dn 98.5 3.7E-07 8E-12 91.4 10.4 102 224-340 155-261 (306)
247 PF12774 AAA_6: Hydrolytic ATP 98.5 1.5E-05 3.3E-10 76.5 20.7 125 225-370 32-175 (231)
248 PRK06921 hypothetical protein; 98.5 6.2E-07 1.3E-11 88.2 11.1 103 225-339 117-224 (266)
249 PF13401 AAA_22: AAA domain; P 98.5 5.7E-07 1.2E-11 78.1 9.1 72 225-296 4-99 (131)
250 KOG0482 DNA replication licens 98.5 1.3E-06 2.8E-11 89.8 11.3 254 192-474 343-643 (721)
251 PLN03210 Resistant to P. syrin 98.4 5.6E-06 1.2E-10 97.4 18.0 160 185-378 178-367 (1153)
252 cd01120 RecA-like_NTPases RecA 98.4 2.7E-06 5.9E-11 76.0 10.4 110 228-341 2-138 (165)
253 PF05729 NACHT: NACHT domain 98.4 5.3E-06 1.2E-10 74.6 12.2 139 228-377 3-165 (166)
254 PF12775 AAA_7: P-loop contain 98.3 8.3E-07 1.8E-11 87.5 6.4 138 225-377 33-195 (272)
255 PRK07132 DNA polymerase III su 98.3 1.6E-05 3.4E-10 79.3 15.5 127 223-373 16-160 (299)
256 PRK07276 DNA polymerase III su 98.3 5.3E-06 1.2E-10 82.1 12.0 144 195-372 6-172 (290)
257 PRK05818 DNA polymerase III su 98.3 3.8E-06 8.1E-11 81.3 10.1 121 223-362 5-147 (261)
258 KOG0481 DNA replication licens 98.2 1.1E-05 2.3E-10 83.3 12.2 266 192-473 332-643 (729)
259 COG3267 ExeA Type II secretory 98.2 4.2E-05 9.2E-10 73.1 15.2 189 228-463 54-267 (269)
260 KOG0477 DNA replication licens 98.2 1.2E-05 2.7E-10 84.6 12.2 263 193-472 451-760 (854)
261 KOG1970 Checkpoint RAD17-RFC c 98.2 4.2E-05 9.2E-10 79.9 15.8 215 179-412 70-320 (634)
262 COG1116 TauB ABC-type nitrate/ 98.2 2.7E-06 5.8E-11 81.1 6.3 28 221-248 23-52 (248)
263 COG4650 RtcR Sigma54-dependent 98.1 4.3E-05 9.4E-10 74.0 13.6 135 221-369 204-366 (531)
264 PF03969 AFG1_ATPase: AFG1-lik 98.1 1E-05 2.2E-10 82.8 9.8 101 222-339 59-167 (362)
265 KOG1968 Replication factor C, 98.1 1.3E-05 2.7E-10 89.9 11.1 212 179-411 308-535 (871)
266 PF00931 NB-ARC: NB-ARC domain 98.1 4.1E-05 8.9E-10 75.7 13.4 149 197-379 2-174 (287)
267 KOG2170 ATPase of the AAA+ sup 98.1 5.6E-05 1.2E-09 73.7 13.4 128 192-339 83-224 (344)
268 TIGR02237 recomb_radB DNA repa 98.1 7.8E-06 1.7E-10 77.3 7.3 115 221-338 8-148 (209)
269 PF00910 RNA_helicase: RNA hel 98.1 1.2E-05 2.6E-10 67.8 7.1 23 228-250 1-23 (107)
270 KOG2543 Origin recognition com 98.0 6.6E-05 1.4E-09 75.4 13.0 161 192-376 7-194 (438)
271 KOG2228 Origin recognition com 98.0 3.4E-05 7.4E-10 76.2 10.6 161 192-375 25-219 (408)
272 TIGR02688 conserved hypothetic 98.0 0.00076 1.6E-08 69.6 19.4 215 223-471 207-435 (449)
273 PRK11823 DNA repair protein Ra 98.0 3.9E-05 8.4E-10 81.0 10.4 79 221-299 76-171 (446)
274 COG1618 Predicted nucleotide k 97.9 9.3E-05 2E-09 65.9 10.2 26 225-250 5-30 (179)
275 PRK15455 PrkA family serine pr 97.9 1.7E-05 3.7E-10 84.3 6.4 63 189-258 74-137 (644)
276 cd00983 recA RecA is a bacter 97.9 6.2E-05 1.3E-09 75.7 10.1 118 221-338 51-190 (325)
277 cd01124 KaiC KaiC is a circadi 97.9 8.5E-05 1.8E-09 68.6 9.6 103 228-341 2-141 (187)
278 cd01121 Sms Sms (bacterial rad 97.9 7.6E-05 1.7E-09 76.8 10.1 79 221-299 78-173 (372)
279 PRK09361 radB DNA repair and r 97.9 6.3E-05 1.4E-09 72.0 8.9 39 221-259 19-60 (225)
280 PF14516 AAA_35: AAA-like doma 97.8 0.0022 4.7E-08 65.3 20.4 147 225-376 31-215 (331)
281 COG1485 Predicted ATPase [Gene 97.8 0.00011 2.5E-09 73.2 10.4 101 222-342 62-174 (367)
282 TIGR02858 spore_III_AA stage I 97.8 6.6E-05 1.4E-09 73.9 8.5 113 226-360 112-256 (270)
283 TIGR02012 tigrfam_recA protein 97.8 7.8E-05 1.7E-09 74.9 9.1 118 221-338 51-190 (321)
284 PF13207 AAA_17: AAA domain; P 97.8 2.2E-05 4.8E-10 67.2 4.0 30 228-257 2-31 (121)
285 COG5271 MDN1 AAA ATPase contai 97.8 0.00015 3.2E-09 83.5 11.2 138 225-377 1543-1705(4600)
286 cd03283 ABC_MutS-like MutS-lik 97.8 0.00017 3.7E-09 67.8 10.0 107 222-343 22-151 (199)
287 PRK08533 flagellar accessory p 97.7 0.00023 5.1E-09 68.5 11.0 109 222-340 21-163 (230)
288 KOG1051 Chaperone HSP104 and r 97.7 0.00027 5.9E-09 79.0 12.7 160 190-375 185-363 (898)
289 COG1373 Predicted ATPase (AAA+ 97.7 0.0003 6.5E-09 73.2 12.4 121 227-369 39-161 (398)
290 PHA00729 NTP-binding motif con 97.7 7.6E-05 1.6E-09 71.0 7.1 24 227-250 19-42 (226)
291 PRK09376 rho transcription ter 97.7 0.00016 3.5E-09 73.9 9.8 110 228-337 172-317 (416)
292 TIGR01618 phage_P_loop phage n 97.7 0.00013 2.9E-09 69.4 8.4 72 225-298 12-95 (220)
293 PF03266 NTPase_1: NTPase; In 97.7 0.00014 2.9E-09 66.6 7.6 23 227-249 1-23 (168)
294 cd01394 radB RadB. The archaea 97.7 0.00013 2.8E-09 69.4 7.8 117 221-339 15-157 (218)
295 PRK08118 topology modulation p 97.7 0.0001 2.2E-09 67.4 6.6 32 227-258 3-34 (167)
296 PF05707 Zot: Zonular occluden 97.6 5.2E-05 1.1E-09 70.9 4.6 123 228-362 3-146 (193)
297 cd03216 ABC_Carb_Monos_I This 97.6 0.00014 3E-09 66.1 7.2 106 222-341 23-143 (163)
298 PF13671 AAA_33: AAA domain; P 97.6 0.0002 4.3E-09 63.0 8.1 37 228-266 2-38 (143)
299 COG2884 FtsE Predicted ATPase 97.6 0.00064 1.4E-08 62.4 11.3 53 276-342 147-199 (223)
300 COG4178 ABC-type uncharacteriz 97.6 0.00014 3E-09 78.1 7.7 53 274-341 523-575 (604)
301 KOG2383 Predicted ATPase [Gene 97.6 0.00013 2.7E-09 73.8 6.9 28 223-250 112-139 (467)
302 cd01131 PilT Pilus retraction 97.6 0.00029 6.2E-09 66.2 9.0 66 228-293 4-83 (198)
303 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.6 0.00035 7.6E-09 62.1 9.1 103 222-342 23-129 (144)
304 PRK07261 topology modulation p 97.6 0.00012 2.6E-09 67.1 6.2 31 228-258 3-33 (171)
305 PRK04296 thymidine kinase; Pro 97.6 0.00051 1.1E-08 64.1 10.5 22 228-249 5-26 (190)
306 COG1126 GlnQ ABC-type polar am 97.6 0.00025 5.4E-09 66.4 8.0 52 274-339 144-195 (240)
307 PRK00131 aroK shikimate kinase 97.6 7.1E-05 1.5E-09 68.1 4.5 39 224-264 3-41 (175)
308 cd01128 rho_factor Transcripti 97.6 0.00082 1.8E-08 65.4 12.0 113 225-337 16-164 (249)
309 PF13191 AAA_16: AAA ATPase do 97.6 7.9E-05 1.7E-09 68.4 4.4 59 193-261 2-63 (185)
310 PHA02624 large T antigen; Prov 97.5 0.00028 6.1E-09 75.6 8.9 123 221-361 427-561 (647)
311 PHA02774 E1; Provisional 97.5 0.00035 7.6E-09 74.5 9.6 33 225-257 434-467 (613)
312 PRK06067 flagellar accessory p 97.5 0.0003 6.5E-09 67.8 8.4 38 221-258 21-61 (234)
313 COG3854 SpoIIIAA ncharacterize 97.5 0.00055 1.2E-08 64.5 9.7 71 226-296 138-230 (308)
314 TIGR00416 sms DNA repair prote 97.5 0.00054 1.2E-08 72.5 10.7 78 221-298 90-184 (454)
315 cd03222 ABC_RNaseL_inhibitor T 97.5 0.00052 1.1E-08 63.3 9.1 106 223-341 23-133 (177)
316 PRK06581 DNA polymerase III su 97.5 0.0013 2.8E-08 62.9 11.7 140 223-381 13-167 (263)
317 PRK09354 recA recombinase A; P 97.5 0.00038 8.3E-09 70.6 8.6 78 221-298 56-152 (349)
318 PRK13695 putative NTPase; Prov 97.5 0.0021 4.5E-08 58.9 12.7 22 228-249 3-24 (174)
319 cd01393 recA_like RecA is a b 97.5 0.00032 7E-09 66.9 7.6 117 221-338 15-167 (226)
320 cd03238 ABC_UvrA The excision 97.5 0.0011 2.4E-08 61.1 10.6 105 223-341 19-150 (176)
321 cd03228 ABCC_MRP_Like The MRP 97.5 0.00085 1.8E-08 61.4 10.0 107 222-343 25-158 (171)
322 cd01129 PulE-GspE PulE/GspE Th 97.5 0.0012 2.6E-08 64.9 11.6 93 188-294 57-159 (264)
323 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.001 2.2E-08 63.3 10.7 22 226-247 30-51 (213)
324 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00031 6.8E-09 67.4 7.3 117 221-338 15-168 (235)
325 PF07693 KAP_NTPase: KAP famil 97.4 0.0025 5.5E-08 64.2 14.2 79 284-378 172-266 (325)
326 PF06309 Torsin: Torsin; Inte 97.4 0.00037 8E-09 60.0 6.7 51 191-249 25-77 (127)
327 PF10443 RNA12: RNA12 protein; 97.4 0.011 2.3E-07 61.1 18.5 79 287-378 151-232 (431)
328 cd03223 ABCD_peroxisomal_ALDP 97.4 0.00085 1.8E-08 61.1 9.3 103 222-341 24-149 (166)
329 COG1121 ZnuC ABC-type Mn/Zn tr 97.4 0.00054 1.2E-08 66.2 8.1 56 274-343 147-202 (254)
330 cd03247 ABCC_cytochrome_bd The 97.4 0.0013 2.8E-08 60.6 10.4 107 222-343 25-160 (178)
331 COG1120 FepC ABC-type cobalami 97.4 0.0002 4.4E-09 69.4 5.1 25 225-249 28-52 (258)
332 PRK06762 hypothetical protein; 97.4 0.0007 1.5E-08 61.4 8.5 38 226-263 3-40 (166)
333 PF13604 AAA_30: AAA domain; P 97.4 0.00095 2.1E-08 62.6 9.4 71 226-296 19-105 (196)
334 PF04665 Pox_A32: Poxvirus A32 97.4 0.0021 4.6E-08 61.9 11.9 133 223-374 11-169 (241)
335 COG1127 Ttg2A ABC-type transpo 97.4 0.00061 1.3E-08 64.7 7.8 55 274-341 153-207 (263)
336 PRK03839 putative kinase; Prov 97.4 0.00015 3.3E-09 66.8 3.8 29 228-256 3-31 (180)
337 TIGR01420 pilT_fam pilus retra 97.4 0.00035 7.6E-09 71.4 6.8 68 226-293 123-204 (343)
338 COG5245 DYN1 Dynein, heavy cha 97.4 0.0023 4.9E-08 73.7 13.4 141 222-378 1491-1661(3164)
339 COG4619 ABC-type uncharacteriz 97.4 0.00095 2.1E-08 60.1 8.6 27 223-249 27-53 (223)
340 cd00267 ABC_ATPase ABC (ATP-bi 97.4 0.00055 1.2E-08 61.6 7.3 107 223-343 23-143 (157)
341 TIGR03877 thermo_KaiC_1 KaiC d 97.4 0.0016 3.4E-08 63.0 10.9 37 221-257 17-56 (237)
342 PRK13947 shikimate kinase; Pro 97.4 0.00018 3.9E-09 65.6 4.0 31 227-257 3-33 (171)
343 PF06745 KaiC: KaiC; InterPro 97.3 0.00086 1.9E-08 64.1 8.8 76 221-296 15-127 (226)
344 COG5271 MDN1 AAA ATPase contai 97.3 0.0004 8.7E-09 80.2 7.2 137 225-376 888-1048(4600)
345 cd03246 ABCC_Protease_Secretio 97.3 0.0012 2.7E-08 60.4 9.4 106 223-342 26-158 (173)
346 cd01122 GP4d_helicase GP4d_hel 97.3 0.00098 2.1E-08 65.6 9.2 38 221-258 26-67 (271)
347 KOG0479 DNA replication licens 97.3 0.0071 1.5E-07 63.9 15.5 150 192-360 302-482 (818)
348 PRK10536 hypothetical protein; 97.3 0.0021 4.5E-08 62.4 10.9 22 227-248 76-97 (262)
349 cd00464 SK Shikimate kinase (S 97.3 0.00023 5.1E-09 63.4 4.1 39 227-267 1-39 (154)
350 COG4608 AppF ABC-type oligopep 97.3 0.00067 1.5E-08 65.8 7.4 106 222-340 36-170 (268)
351 cd03214 ABC_Iron-Siderophores_ 97.3 0.0015 3.2E-08 60.2 9.5 107 223-342 23-160 (180)
352 PRK00625 shikimate kinase; Pro 97.3 0.00022 4.9E-09 65.5 3.9 31 227-257 2-32 (173)
353 PF05970 PIF1: PIF1-like helic 97.3 0.0015 3.2E-08 67.4 10.3 104 223-339 20-150 (364)
354 TIGR02238 recomb_DMC1 meiotic 97.3 0.0013 2.9E-08 66.1 9.6 115 221-337 92-243 (313)
355 cd03280 ABC_MutS2 MutS2 homolo 97.3 0.002 4.4E-08 60.5 10.2 21 226-246 29-49 (200)
356 cd00984 DnaB_C DnaB helicase C 97.3 0.0014 3.1E-08 63.2 9.3 37 221-257 9-49 (242)
357 PF00437 T2SE: Type II/IV secr 97.2 0.00036 7.8E-09 68.7 5.1 96 188-294 101-207 (270)
358 cd03243 ABC_MutS_homologs The 97.2 0.0013 2.9E-08 61.8 8.7 22 226-247 30-51 (202)
359 COG1136 SalX ABC-type antimicr 97.2 0.0024 5.2E-08 60.8 10.4 65 276-360 152-216 (226)
360 PRK13949 shikimate kinase; Pro 97.2 0.00027 5.8E-09 64.7 3.8 31 227-257 3-33 (169)
361 cd00227 CPT Chloramphenicol (C 97.2 0.00029 6.2E-09 64.8 4.0 36 226-261 3-38 (175)
362 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.00027 5.9E-09 65.1 3.9 35 228-264 2-36 (183)
363 KOG3347 Predicted nucleotide k 97.2 0.00026 5.6E-09 62.2 3.4 31 226-256 8-38 (176)
364 TIGR03880 KaiC_arch_3 KaiC dom 97.2 0.0029 6.2E-08 60.5 11.0 38 221-258 12-52 (224)
365 COG0703 AroK Shikimate kinase 97.2 0.00027 5.8E-09 64.2 3.6 50 226-280 3-52 (172)
366 COG2274 SunT ABC-type bacterio 97.2 0.0014 3.1E-08 72.7 10.0 63 276-360 619-681 (709)
367 PRK04841 transcriptional regul 97.2 0.0064 1.4E-07 70.0 15.8 152 226-398 33-220 (903)
368 PRK12723 flagellar biosynthesi 97.2 0.003 6.4E-08 65.4 11.6 25 225-249 174-198 (388)
369 TIGR02782 TrbB_P P-type conjug 97.2 0.00083 1.8E-08 67.2 7.4 69 225-293 132-213 (299)
370 TIGR03878 thermo_KaiC_2 KaiC d 97.2 0.0033 7.1E-08 61.7 11.4 37 221-257 32-71 (259)
371 cd00544 CobU Adenosylcobinamid 97.2 0.002 4.3E-08 58.9 9.2 106 228-339 2-125 (169)
372 PRK06217 hypothetical protein; 97.2 0.00033 7E-09 64.9 4.0 30 228-257 4-33 (183)
373 PRK05800 cobU adenosylcobinami 97.2 0.0015 3.1E-08 59.9 8.2 105 228-339 4-125 (170)
374 PRK13948 shikimate kinase; Pro 97.2 0.00067 1.4E-08 62.8 6.0 43 223-267 8-50 (182)
375 PF08298 AAA_PrkA: PrkA AAA do 97.2 0.00058 1.3E-08 68.8 5.8 61 192-260 62-124 (358)
376 PTZ00202 tuzin; Provisional 97.2 0.0057 1.2E-07 63.4 13.0 62 188-259 259-320 (550)
377 PRK14532 adenylate kinase; Pro 97.2 0.00033 7.2E-09 65.0 3.8 37 227-265 2-38 (188)
378 PRK00771 signal recognition pa 97.2 0.0025 5.4E-08 66.9 10.6 26 224-249 94-119 (437)
379 COG2804 PulE Type II secretory 97.2 0.00087 1.9E-08 70.2 7.0 94 187-295 234-338 (500)
380 cd02021 GntK Gluconate kinase 97.1 0.00039 8.4E-09 62.0 3.8 28 228-255 2-29 (150)
381 cd00046 DEXDc DEAD-like helica 97.1 0.0021 4.5E-08 55.0 8.3 24 227-250 2-25 (144)
382 PRK04301 radA DNA repair and r 97.1 0.0022 4.7E-08 64.8 9.6 117 221-338 98-251 (317)
383 COG4525 TauB ABC-type taurine 97.1 0.00066 1.4E-08 62.6 5.2 28 222-249 28-55 (259)
384 cd01130 VirB11-like_ATPase Typ 97.1 0.00095 2.1E-08 62.0 6.4 70 224-293 24-109 (186)
385 COG1124 DppF ABC-type dipeptid 97.1 0.002 4.3E-08 61.4 8.5 53 276-341 151-203 (252)
386 TIGR02525 plasmid_TraJ plasmid 97.1 0.0015 3.3E-08 67.1 8.5 68 227-294 151-235 (372)
387 PRK14531 adenylate kinase; Pro 97.1 0.00048 1E-08 63.8 4.3 29 227-255 4-32 (183)
388 smart00534 MUTSac ATPase domai 97.1 0.003 6.6E-08 58.6 9.6 19 228-246 2-20 (185)
389 cd03213 ABCG_EPDR ABCG transpo 97.1 0.0028 6E-08 59.2 9.4 106 222-341 32-172 (194)
390 PF01745 IPT: Isopentenyl tran 97.1 0.00068 1.5E-08 63.4 5.0 133 228-378 4-142 (233)
391 PRK09519 recA DNA recombinatio 97.1 0.0024 5.2E-08 71.1 10.2 117 221-337 56-194 (790)
392 TIGR02788 VirB11 P-type DNA tr 97.1 0.0022 4.7E-08 64.6 9.1 73 222-294 141-228 (308)
393 COG0563 Adk Adenylate kinase a 97.1 0.00076 1.6E-08 62.3 5.3 33 228-262 3-35 (178)
394 cd03230 ABC_DR_subfamily_A Thi 97.1 0.0024 5.2E-08 58.5 8.7 105 223-341 24-156 (173)
395 TIGR01313 therm_gnt_kin carboh 97.1 0.00043 9.3E-09 62.6 3.7 28 228-255 1-28 (163)
396 PLN03187 meiotic recombination 97.1 0.0015 3.3E-08 66.4 7.9 116 221-337 122-273 (344)
397 cd02020 CMPK Cytidine monophos 97.1 0.00047 1E-08 60.8 3.8 30 228-257 2-31 (147)
398 PRK13900 type IV secretion sys 97.1 0.0014 3.1E-08 66.4 7.7 71 224-294 159-245 (332)
399 TIGR02533 type_II_gspE general 97.1 0.0014 3.1E-08 69.9 8.0 94 186-294 217-321 (486)
400 COG1125 OpuBA ABC-type proline 97.1 0.0007 1.5E-08 64.8 4.9 20 228-247 30-49 (309)
401 cd01428 ADK Adenylate kinase ( 97.1 0.00048 1E-08 63.9 3.8 35 228-264 2-36 (194)
402 cd03287 ABC_MSH3_euk MutS3 hom 97.1 0.0035 7.6E-08 60.0 9.7 23 225-247 31-53 (222)
403 COG2874 FlaH Predicted ATPases 97.1 0.0033 7.2E-08 58.8 9.1 128 210-349 11-176 (235)
404 TIGR00767 rho transcription te 97.1 0.0019 4.1E-08 66.4 8.4 112 226-337 169-316 (415)
405 PRK14530 adenylate kinase; Pro 97.1 0.00057 1.2E-08 65.0 4.3 35 227-263 5-39 (215)
406 PRK05973 replicative DNA helic 97.1 0.0037 8.1E-08 60.2 9.8 38 221-258 60-100 (237)
407 COG1066 Sms Predicted ATP-depe 97.0 0.0032 6.9E-08 64.3 9.6 98 222-319 90-203 (456)
408 cd03227 ABC_Class2 ABC-type Cl 97.0 0.0026 5.6E-08 57.6 8.3 23 225-247 21-43 (162)
409 cd03215 ABC_Carb_Monos_II This 97.0 0.0022 4.7E-08 59.3 7.9 105 223-341 24-165 (182)
410 PRK14974 cell division protein 97.0 0.0047 1E-07 62.7 10.8 25 225-249 140-164 (336)
411 PRK13541 cytochrome c biogenes 97.0 0.0025 5.5E-08 59.5 8.3 27 223-249 24-50 (195)
412 PRK14722 flhF flagellar biosyn 97.0 0.0023 5E-08 65.7 8.5 26 224-249 136-161 (374)
413 COG4088 Predicted nucleotide k 97.0 0.0013 2.8E-08 61.1 6.0 23 228-250 4-26 (261)
414 PRK04328 hypothetical protein; 97.0 0.0068 1.5E-07 59.1 11.5 28 221-248 19-46 (249)
415 PTZ00088 adenylate kinase 1; P 97.0 0.00071 1.5E-08 65.0 4.5 37 225-263 6-42 (229)
416 PTZ00035 Rad51 protein; Provis 97.0 0.0039 8.5E-08 63.4 10.1 115 221-337 114-265 (337)
417 TIGR02236 recomb_radA DNA repa 97.0 0.0035 7.6E-08 63.1 9.7 40 221-260 91-139 (310)
418 COG1131 CcmA ABC-type multidru 97.0 0.0011 2.4E-08 66.2 5.8 55 277-344 147-201 (293)
419 PRK05057 aroK shikimate kinase 97.0 0.00074 1.6E-08 62.0 4.1 34 225-258 4-37 (172)
420 PRK06547 hypothetical protein; 97.0 0.00072 1.6E-08 62.0 4.0 33 224-256 14-46 (172)
421 PRK03731 aroL shikimate kinase 97.0 0.00077 1.7E-08 61.4 4.2 30 227-256 4-33 (171)
422 PRK13833 conjugal transfer pro 97.0 0.0025 5.4E-08 64.3 8.0 69 225-293 144-224 (323)
423 TIGR02239 recomb_RAD51 DNA rep 97.0 0.003 6.6E-08 63.7 8.6 115 221-337 92-243 (316)
424 PRK13946 shikimate kinase; Pro 97.0 0.00071 1.5E-08 62.7 3.8 33 225-257 10-42 (184)
425 COG1102 Cmk Cytidylate kinase 97.0 0.00071 1.5E-08 60.4 3.6 28 228-255 3-30 (179)
426 PRK12724 flagellar biosynthesi 97.0 0.0096 2.1E-07 61.8 12.3 25 225-249 223-247 (432)
427 cd03217 ABC_FeS_Assembly ABC-t 96.9 0.0036 7.7E-08 58.8 8.6 106 222-341 23-165 (200)
428 cd02027 APSK Adenosine 5'-phos 96.9 0.0031 6.8E-08 56.3 7.8 35 228-262 2-39 (149)
429 TIGR01613 primase_Cterm phage/ 96.9 0.0033 7.1E-08 63.1 8.8 138 195-360 53-202 (304)
430 PRK09544 znuC high-affinity zi 96.9 0.0034 7.4E-08 61.2 8.6 28 222-249 27-54 (251)
431 PRK11174 cysteine/glutathione 96.9 0.0044 9.5E-08 68.0 10.5 28 222-249 373-400 (588)
432 cd03232 ABC_PDR_domain2 The pl 96.9 0.0063 1.4E-07 56.7 10.1 105 223-341 31-169 (192)
433 PRK12339 2-phosphoglycerate ki 96.9 0.011 2.5E-07 55.4 11.8 34 226-261 4-37 (197)
434 PLN02200 adenylate kinase fami 96.9 0.00092 2E-08 64.5 4.5 41 223-265 41-81 (234)
435 COG1119 ModF ABC-type molybden 96.9 0.0071 1.5E-07 57.8 10.2 64 274-349 179-242 (257)
436 COG4133 CcmA ABC-type transpor 96.9 0.0043 9.3E-08 57.0 8.4 51 285-349 149-199 (209)
437 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.011 2.4E-07 56.5 12.0 37 221-257 16-55 (229)
438 cd03229 ABC_Class3 This class 96.9 0.0027 5.9E-08 58.4 7.3 107 223-342 24-163 (178)
439 PRK13539 cytochrome c biogenes 96.9 0.0028 6.1E-08 59.8 7.6 27 223-249 26-52 (207)
440 TIGR01360 aden_kin_iso1 adenyl 96.9 0.00087 1.9E-08 61.8 4.0 35 227-263 5-39 (188)
441 cd03115 SRP The signal recogni 96.9 0.0082 1.8E-07 54.8 10.5 32 228-259 3-37 (173)
442 PRK13538 cytochrome c biogenes 96.9 0.0024 5.2E-08 60.1 7.1 27 223-249 25-51 (204)
443 PRK11176 lipid transporter ATP 96.9 0.0065 1.4E-07 66.6 11.5 27 223-249 367-393 (582)
444 PRK08154 anaerobic benzoate ca 96.9 0.003 6.4E-08 63.6 8.0 35 222-256 130-164 (309)
445 cd03282 ABC_MSH4_euk MutS4 hom 96.9 0.0058 1.3E-07 57.7 9.5 22 226-247 30-51 (204)
446 COG2805 PilT Tfp pilus assembl 96.9 0.0027 5.9E-08 62.3 7.2 72 225-296 124-210 (353)
447 PF13481 AAA_25: AAA domain; P 96.9 0.0019 4.2E-08 59.9 5.8 23 227-249 34-56 (193)
448 PRK13764 ATPase; Provisional 96.9 0.0012 2.6E-08 71.7 5.0 69 225-294 257-334 (602)
449 PRK10436 hypothetical protein; 96.9 0.0023 5.1E-08 67.7 7.1 94 187-294 194-297 (462)
450 PRK13894 conjugal transfer ATP 96.9 0.0033 7.3E-08 63.4 7.9 70 224-293 147-228 (319)
451 TIGR01351 adk adenylate kinase 96.9 0.00098 2.1E-08 63.1 3.9 34 228-263 2-35 (210)
452 PRK06696 uridine kinase; Valid 96.8 0.0021 4.6E-08 61.4 6.2 37 225-261 22-61 (223)
453 PRK14528 adenylate kinase; Pro 96.8 0.0011 2.3E-08 61.7 3.9 34 227-262 3-36 (186)
454 PF05272 VirE: Virulence-assoc 96.8 0.002 4.3E-08 60.5 5.8 111 221-361 48-169 (198)
455 PF00406 ADK: Adenylate kinase 96.8 0.0022 4.7E-08 57.3 5.8 35 230-266 1-35 (151)
456 PRK02496 adk adenylate kinase; 96.8 0.0011 2.4E-08 61.3 4.0 28 228-255 4-31 (184)
457 PLN03186 DNA repair protein RA 96.8 0.0046 9.9E-08 63.0 8.7 117 221-338 119-271 (342)
458 COG4618 ArpD ABC-type protease 96.8 0.0061 1.3E-07 63.7 9.5 26 224-249 361-386 (580)
459 PRK14527 adenylate kinase; Pro 96.8 0.0011 2.3E-08 61.9 3.7 32 224-255 5-36 (191)
460 TIGR03574 selen_PSTK L-seryl-t 96.8 0.0033 7.1E-08 61.2 7.3 34 228-261 2-38 (249)
461 PRK10867 signal recognition pa 96.8 0.0089 1.9E-07 62.7 10.9 74 223-296 98-195 (433)
462 PRK13851 type IV secretion sys 96.8 0.0013 2.8E-08 67.0 4.5 71 223-293 160-245 (344)
463 cd03276 ABC_SMC6_euk Eukaryoti 96.8 0.0064 1.4E-07 57.1 8.8 25 225-249 20-45 (198)
464 TIGR02538 type_IV_pilB type IV 96.8 0.0029 6.2E-08 69.0 7.3 93 187-294 292-395 (564)
465 PRK00279 adk adenylate kinase; 96.8 0.0012 2.6E-08 62.8 3.9 29 228-256 3-31 (215)
466 PRK11889 flhF flagellar biosyn 96.8 0.013 2.9E-07 60.3 11.6 96 197-296 217-332 (436)
467 PF13245 AAA_19: Part of AAA d 96.8 0.0021 4.6E-08 50.6 4.6 22 228-249 13-35 (76)
468 TIGR02655 circ_KaiC circadian 96.8 0.011 2.4E-07 63.2 11.7 38 221-258 17-58 (484)
469 cd03278 ABC_SMC_barmotin Barmo 96.8 0.012 2.6E-07 55.2 10.6 22 227-248 24-45 (197)
470 PRK04040 adenylate kinase; Pro 96.8 0.0017 3.6E-08 60.6 4.6 30 225-254 2-33 (188)
471 PF00448 SRP54: SRP54-type pro 96.8 0.011 2.4E-07 55.4 10.2 102 225-339 1-125 (196)
472 PRK10416 signal recognition pa 96.8 0.014 3E-07 59.0 11.6 26 224-249 113-138 (318)
473 COG1118 CysA ABC-type sulfate/ 96.8 0.0061 1.3E-07 60.1 8.5 24 225-248 28-51 (345)
474 PF13238 AAA_18: AAA domain; P 96.8 0.0011 2.4E-08 56.8 3.1 22 228-249 1-22 (129)
475 cd03285 ABC_MSH2_euk MutS2 hom 96.7 0.012 2.7E-07 56.2 10.6 23 225-247 30-52 (222)
476 COG4175 ProV ABC-type proline/ 96.7 0.006 1.3E-07 60.3 8.4 83 264-362 160-249 (386)
477 COG1134 TagH ABC-type polysacc 96.7 0.0049 1.1E-07 58.9 7.6 57 271-341 152-208 (249)
478 cd03231 ABC_CcmA_heme_exporter 96.7 0.0043 9.2E-08 58.3 7.3 27 223-249 24-50 (201)
479 PF09848 DUF2075: Uncharacteri 96.7 0.0047 1E-07 63.3 8.2 22 228-249 4-25 (352)
480 TIGR03796 NHPM_micro_ABC1 NHPM 96.7 0.0086 1.9E-07 67.3 11.0 28 222-249 502-529 (710)
481 TIGR02868 CydC thiol reductant 96.7 0.01 2.3E-07 64.2 11.3 28 222-249 358-385 (529)
482 TIGR01189 ccmA heme ABC export 96.7 0.0047 1E-07 57.8 7.5 28 222-249 23-50 (198)
483 cd03239 ABC_SMC_head The struc 96.7 0.0094 2E-07 55.0 9.3 24 227-250 24-47 (178)
484 PRK10790 putative multidrug tr 96.7 0.0093 2E-07 65.5 10.9 28 222-249 364-391 (592)
485 PRK11650 ugpC glycerol-3-phosp 96.7 0.0026 5.6E-08 65.4 6.0 27 223-249 28-54 (356)
486 PHA02530 pseT polynucleotide k 96.7 0.0047 1E-07 61.6 7.8 35 227-262 4-38 (300)
487 TIGR01188 drrA daunorubicin re 96.7 0.0024 5.2E-08 64.0 5.6 50 279-342 137-186 (302)
488 TIGR02857 CydD thiol reductant 96.7 0.012 2.6E-07 63.7 11.3 28 222-249 345-372 (529)
489 cd02019 NK Nucleoside/nucleoti 96.7 0.002 4.3E-08 49.6 3.8 22 228-249 2-23 (69)
490 PRK12608 transcription termina 96.7 0.0046 1E-07 63.2 7.5 110 228-337 136-281 (380)
491 PF08303 tRNA_lig_kinase: tRNA 96.7 0.017 3.7E-07 52.0 10.2 132 231-378 5-146 (168)
492 TIGR03375 type_I_sec_LssB type 96.7 0.011 2.4E-07 66.1 11.4 28 222-249 488-515 (694)
493 TIGR02655 circ_KaiC circadian 96.7 0.0057 1.2E-07 65.5 8.6 77 221-297 259-366 (484)
494 TIGR01526 nadR_NMN_Atrans nico 96.7 0.004 8.7E-08 63.1 7.1 40 226-265 163-202 (325)
495 KOG0058 Peptide exporter, ABC 96.7 0.01 2.2E-07 64.6 10.3 34 216-249 483-518 (716)
496 PF06414 Zeta_toxin: Zeta toxi 96.7 0.004 8.7E-08 58.4 6.6 41 223-263 13-54 (199)
497 COG1936 Predicted nucleotide k 96.7 0.0012 2.6E-08 59.7 2.8 29 228-257 3-31 (180)
498 PF08423 Rad51: Rad51; InterP 96.7 0.0076 1.6E-07 59.0 8.6 116 228-344 41-192 (256)
499 TIGR01448 recD_rel helicase, p 96.7 0.0072 1.6E-07 67.7 9.5 71 226-296 339-428 (720)
500 smart00487 DEXDc DEAD-like hel 96.7 0.0074 1.6E-07 54.9 8.2 25 226-250 25-50 (201)
No 1
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-101 Score=722.58 Aligned_cols=440 Identities=81% Similarity=1.254 Sum_probs=424.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCchhhhhhccccCCCccCCCCcccCChhhHHHHHHHHHHHHHHHH
Q 011553 1 MGQGTPGGLNRQGPGGDRKGDGADKKDKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLM 80 (483)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (483)
|||+||||.|..+ ++++++++|++++|| +|+++|++|++.+|++.+++||+|+|..+|.++++++++|+|+|.|
T Consensus 1 MGQ~qSG~~g~~K-----~~~~dk~eK~~~~~~-v~~r~gr~k~~~kGpdAa~klP~V~p~~~C~lrlLk~~RIkDyLLM 74 (440)
T KOG0726|consen 1 MGQGQSGGLGDRK-----GKKDDKKEKKKYEPP-VPTRVGRKKKKGKGPDAASKLPTVTPHTQCKLKLLKLERIKDYLLM 74 (440)
T ss_pred CCccccCCCCCCc-----ccccccccccccCCC-CcchhhhhhhcccCcchhhcCCccccchhHHHHHHHHHHHHHHHHH
Confidence 9999997753322 233445566777766 9999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhcChhHHHHHHHHHHHHhhhCCCcccccceecccCCeEEEecccCCceeEEeccccCccCCCCccEEEEec
Q 011553 81 EEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHN 160 (483)
Q Consensus 81 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 160 (483)
|+||+.+++..++.+.+.++.|.++++||++|+++++++|++++.|++++++++++||++++||+|++.++|||+|.++.
T Consensus 75 EEEFI~NQe~~k~~e~~~ee~r~~vd~lRGtPmsvg~leEiidd~haivst~~g~e~Yv~IlSfVdKdlLepgcsvll~~ 154 (440)
T KOG0726|consen 75 EEEFIRNQERLKPQEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEYYVSILSFVDKDLLEPGCSVLLNH 154 (440)
T ss_pred HHHHHhhccccCCchhhhHHHHhHHHhhcCCccccccHHHHhcCCceEEecccCchheeeeeeeccHhhcCCCCeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeccccCcCcccccceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHH
Q 011553 161 KVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 240 (483)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~ 240 (483)
...++++++.++.+|+++.|+++++|..+|+||+|+++++|+|++.+++||.||++|+.+|+.+|+||+|||+||||||+
T Consensus 155 k~~avvGvL~d~~dpmv~vmK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTL 234 (440)
T KOG0726|consen 155 KVHAVVGVLQDDTDPMVSVMKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTL 234 (440)
T ss_pred ccceEEEEeccCCCccceeeecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHH
Q 011553 241 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLN 320 (483)
Q Consensus 241 Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~ 320 (483)
||+|+|+.+++.|+++.+++++++|.|++++.++++|..|..++|+|+||||||+++++|+++.|++.+++|+++++||+
T Consensus 235 LAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLN 314 (440)
T KOG0726|consen 235 LAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLN 314 (440)
T ss_pred HHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhh
Q 011553 321 QLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGAD 400 (483)
Q Consensus 321 ~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~ 400 (483)
++|+|+++++|.||++||+.+.|||+|+||||+++.|+||.||...+..||.+|+++|.+..
T Consensus 315 QldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~------------------ 376 (440)
T KOG0726|consen 315 QLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAE------------------ 376 (440)
T ss_pred hccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhc------------------
Confidence 99999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhccCCCCCC
Q 011553 401 IKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEG 480 (483)
Q Consensus 401 i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~~~~~~~~ 480 (483)
+++++++....+.+||+||.++|.+|++.|+++.|+.|+.+||..|.+++++++...+|++
T Consensus 377 -------------------dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~K~~g~~eg 437 (440)
T KOG0726|consen 377 -------------------DVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYKKKEGVPEG 437 (440)
T ss_pred -------------------cccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhcccCCccc
Confidence 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 011553 481 LYM 483 (483)
Q Consensus 481 ~~~ 483 (483)
||+
T Consensus 438 ly~ 440 (440)
T KOG0726|consen 438 LYL 440 (440)
T ss_pred ccC
Confidence 995
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-82 Score=611.87 Aligned_cols=387 Identities=58% Similarity=0.904 Sum_probs=359.3
Q ss_pred CCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhcChhHHHHHHHHHHHHhhhCCCcccccceecccCCeEEEecc
Q 011553 53 ARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSS 132 (483)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 132 (483)
...+.......|+.....++++...+..+........ ......+...+++++.++..|..++++.|.++++++++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~~~l~~~pl~vg~v~e~id~~~~iVks~ 92 (406)
T COG1222 15 SYEPQEYLNKLEDTKLKLLEKEKRLLLLEEQRLEAEG--LRLKREVDRLREEIERLKEPPLIVGTVLEVLDDGRAIVKSS 92 (406)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHhcCCCceEEEEEEEcCCceEEEEeC
Confidence 3344455566777777777777777665433322222 12233556677889999999999999999999999999999
Q ss_pred cCCceeEEeccccCccCCCCccEEEEeceeeeeeccccCcCcccccceecccCCCCCcccccccHHHHHHHHHHHhcCCC
Q 011553 133 VGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLT 212 (483)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~ 212 (483)
.++.|++++.+++|++.++||++|.+++.++.++.+|+.+.||+++.|.+++.|.++|+||+|+++|+++|+|.|++|+.
T Consensus 93 ~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~ 172 (406)
T COG1222 93 TGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLK 172 (406)
T ss_pred CCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcC
Q 011553 213 HPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDE 292 (483)
Q Consensus 213 ~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDE 292 (483)
+|++|..+|+.+|+|||||||||||||+||||+|+++++.|+++.+|+|.++|+|+++++++++|..|+.++||||||||
T Consensus 173 ~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDE 252 (406)
T COG1222 173 NPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDE 252 (406)
T ss_pred CHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHH
Q 011553 293 IDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ 372 (483)
Q Consensus 293 iD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~ 372 (483)
||+++.+|++..+++++++|+++++||++||||+++++|.||+|||+++.|||||+||||||+.|+||+||.+.|.+||+
T Consensus 253 IDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~ 332 (406)
T COG1222 253 IDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILK 332 (406)
T ss_pred hhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 011553 373 IHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 452 (483)
Q Consensus 373 ~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~ 452 (483)
+|+++|++.. ++|++.++..++|+||+||+++|++|++.|+++
T Consensus 333 IHtrkM~l~~-------------------------------------dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~ 375 (406)
T COG1222 333 IHTRKMNLAD-------------------------------------DVDLELLARLTEGFSGADLKAICTEAGMFAIRE 375 (406)
T ss_pred HHhhhccCcc-------------------------------------CcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHh
Confidence 9999999988 899999999999999999999999999999999
Q ss_pred cCCCccHHHHHHHHHHHHhhccCCCC
Q 011553 453 RRMKVTHTDFKKAKEKVMFKKKEGVP 478 (483)
Q Consensus 453 ~~~~it~ed~~~Al~~~~~~~~~~~~ 478 (483)
++..||++||.+|+++++.+.+....
T Consensus 376 ~R~~Vt~~DF~~Av~KV~~~~~~~~~ 401 (406)
T COG1222 376 RRDEVTMEDFLKAVEKVVKKKKKLSS 401 (406)
T ss_pred ccCeecHHHHHHHHHHHHhccccccc
Confidence 99999999999999999987655433
No 3
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.4e-74 Score=596.59 Aligned_cols=438 Identities=79% Similarity=1.218 Sum_probs=411.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCchhhhhhccccCCCccCCCCcccCChhhHHHHHHHHHHHHHHHH
Q 011553 1 MGQGTPGGLNRQGPGGDRKGDGADKKDKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLM 80 (483)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (483)
|||+|++|+| + +++++++++++++|||||+.+||| |+++|++.+++||+++|..+|++++.+|+++++++.+
T Consensus 1 ~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (438)
T PTZ00361 1 MGNAQGQGNN----Q---KDKNKKKEKKKKESPPPPHEIKRK-KKRKGPDAASKLPKVTPNTKCRLRLLKLERIKDYLLL 72 (438)
T ss_pred CCCCCCCCCC----c---ccCCccccccccCCCCCcchhhhh-ccccCCCccccCCCcCCchhhHHHHHHHHHHHHHHHH
Confidence 9999986652 1 233556677889998777777754 5568999999999999999999999999999999999
Q ss_pred HHHHhhhhhhcChhHHHHHHHHHHHHhhhCCCcccccceecccCCeEEEecccCCceeEEeccccCccCCCCccEEEEec
Q 011553 81 EEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHN 160 (483)
Q Consensus 81 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 160 (483)
|+++.+++...++.+.+....+++++.++..|..++++.|.++++++++.++.++++++++.++++++.++||++|.++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~ 152 (438)
T PTZ00361 73 EEEFITNQEAQKPAQEKNEAELKKVDDLRGSPLSVGTLEEIIDENHAIVSSSVGPEYYVNILSFVDKEQLEPGCSVLLHN 152 (438)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCCcEEEEEEEEeCCCeEEEEeCCCCEEEEeccCcCCHhhCCCCCEEEEcC
Confidence 99999999877777777888899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeccccCcCcccccceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHH
Q 011553 161 KVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 240 (483)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~ 240 (483)
.+..++++++.+.++++..|++++.|.++|+||+|+++++++|.+++.+|+.++++|..+|+.+++++|||||||||||+
T Consensus 153 ~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~ 232 (438)
T PTZ00361 153 KTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTL 232 (438)
T ss_pred CCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHH
Q 011553 241 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLN 320 (483)
Q Consensus 241 Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~ 320 (483)
+|+++|++++.+|+.+.++++.+.|.|+.+..++.+|..|....|+||||||||.++.++.+..+++..+.+++++++|.
T Consensus 233 LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~ 312 (438)
T PTZ00361 233 LAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLN 312 (438)
T ss_pred HHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877777888899999999999
Q ss_pred hccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhh
Q 011553 321 QLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGAD 400 (483)
Q Consensus 321 ~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~ 400 (483)
+++++....++.||+|||+++.+|++++|||||++.|+|+.|+.++|.+||+.++.++.+..
T Consensus 313 ~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~------------------ 374 (438)
T PTZ00361 313 QLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE------------------ 374 (438)
T ss_pred HHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc------------------
Confidence 99998878899999999999999999999999999999999999999999999999888766
Q ss_pred HHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhccCCCCCC
Q 011553 401 IKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEG 480 (483)
Q Consensus 401 i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~~~~~~~~ 480 (483)
+++++.++..++|+|++||.++|++|++.|+++++..|+.+||.+|+++++++++...|.+
T Consensus 375 -------------------dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~~~~~~~~~ 435 (438)
T PTZ00361 375 -------------------DVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYRKKGNIPEG 435 (438)
T ss_pred -------------------CcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhhcccCCCcc
Confidence 7888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 011553 481 LYM 483 (483)
Q Consensus 481 ~~~ 483 (483)
||+
T Consensus 436 ~~~ 438 (438)
T PTZ00361 436 LYL 438 (438)
T ss_pred ccC
Confidence 996
No 4
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-70 Score=507.55 Aligned_cols=380 Identities=52% Similarity=0.882 Sum_probs=359.8
Q ss_pred CCcccCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhcChhHHHHHHHHHHHHhhhCCCcccccceecccCCeEEEecccC
Q 011553 55 LPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVG 134 (483)
Q Consensus 55 ~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 134 (483)
++.. .....|.++.+|++..+.++.++++++...+.- +.....-+++++.++..|..++.|.|.++.+++++.+.++
T Consensus 22 ~~~~-~~~dly~r~k~le~~le~l~vqe~yik~e~~~l--kre~~~aqeevkriqsvplvigqfle~vdqnt~ivgsttg 98 (408)
T KOG0727|consen 22 LSGL-DKEDLYVRYKKLERELELLEVQEDYIKDEQRNL--KRELLHAQEEVKRIQSVPLVIGQFLEAVDQNTAIVGSTTG 98 (408)
T ss_pred CCcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhccchHHHHHHHhhhccCceeecccC
Confidence 4433 356889999999999999999999987765432 2223334677999999999999999999999999999999
Q ss_pred CceeEEeccccCccCCCCccEEEEeceeeeeeccccCcCcccccceecccCCCCCcccccccHHHHHHHHHHHhcCCCCh
Q 011553 135 PEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHP 214 (483)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~ 214 (483)
.+||++++|.+|++.++|+++|.+++.+...+++++.+.++..+++.-+..|.++|.||+|++-++++|++++++|+.+.
T Consensus 99 sny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelplt~~ 178 (408)
T KOG0727|consen 99 SNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHA 178 (408)
T ss_pred CceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCc
Q 011553 215 ELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEID 294 (483)
Q Consensus 215 ~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD 294 (483)
++|.++|+.+|+|||+|||||||||+|++|+|+.+.+.|+++.++++..+|.|+++++++++|..|+.++|+||||||||
T Consensus 179 ~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideid 258 (408)
T KOG0727|consen 179 DLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEID 258 (408)
T ss_pred HHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHH
Q 011553 295 AVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIH 374 (483)
Q Consensus 295 ~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~ 374 (483)
+++++|++.+.+.++++|++|+++|++||+|+...+|.||++||+.+.+||+|+||||+++.|+||.||..+++-+|...
T Consensus 259 aiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~ti 338 (408)
T KOG0727|consen 259 AIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTI 338 (408)
T ss_pred hHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcC
Q 011553 375 TSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERR 454 (483)
Q Consensus 375 ~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~ 454 (483)
+++|++++ ++|++.+..+.+..|+++|.++|++|++.|+++.+
T Consensus 339 tskm~ls~-------------------------------------~vdle~~v~rpdkis~adi~aicqeagm~avr~nr 381 (408)
T KOG0727|consen 339 TSKMNLSD-------------------------------------EVDLEDLVARPDKISGADINAICQEAGMLAVRENR 381 (408)
T ss_pred hhcccCCc-------------------------------------ccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcc
Confidence 99999988 88899999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhcc
Q 011553 455 MKVTHTDFKKAKEKVMFKKK 474 (483)
Q Consensus 455 ~~it~ed~~~Al~~~~~~~~ 474 (483)
..|...||++|++.++.+..
T Consensus 382 yvvl~kd~e~ay~~~vk~~~ 401 (408)
T KOG0727|consen 382 YVVLQKDFEKAYKTVVKKDE 401 (408)
T ss_pred eeeeHHHHHHHHHhhcCCcc
Confidence 99999999999999987653
No 5
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-63 Score=457.07 Aligned_cols=344 Identities=50% Similarity=0.827 Sum_probs=332.7
Q ss_pred HHHHHHHHHHHhhhCCCcccccceecccCCeEEEecccCCceeEEeccccCccCCCCccEEEEeceeeeeeccccCcCcc
Q 011553 96 EKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDP 175 (483)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 175 (483)
.+...+++++.-++....-++.+.+..++....+.......|.+.+...++-..+.++..|.+.+++|....+++...||
T Consensus 52 ~kvr~lreel~~lqe~gsyvgev~k~m~k~kVLVKvhpegKyvvdv~k~i~i~~~~~~~rVaLR~dsY~lhkiLpnKvDp 131 (404)
T KOG0728|consen 52 AKVRLLREELQLLQEPGSYVGEVVKAMGKKKVLVKVHPEGKYVVDVDKNIDISDVTPSSRVALRNDSYTLHKILPNKVDP 131 (404)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHhcCcceEEEEEcCCCcEEEeccCCCcHhhcCCcceEEEeccchHHHHhcccccch
Confidence 35566788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 176 MVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 176 ~~~~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
+++.|.+++.|..+|+-++|++.++++|++.+++|..||++|+.+|+..|+|+|||||||||||+||+|+|+.+.+.|++
T Consensus 132 LVsLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~fir 211 (404)
T KOG0728|consen 132 LVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 211 (404)
T ss_pred hhHHHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEE
Q 011553 256 VVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL 335 (483)
Q Consensus 256 v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ 335 (483)
++++++.++|+|++.++++.+|-.|+.++|+|||+||||.++..|.++.++++.+.|++++++|+++|+|....++.||+
T Consensus 212 vsgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvim 291 (404)
T KOG0728|consen 212 VSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIM 291 (404)
T ss_pred echHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccc
Q 011553 336 ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRM 415 (483)
Q Consensus 336 ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~ 415 (483)
+||+.+.+||+|+||||+++.|+||+|+.+.|.+|+++|.+++++..
T Consensus 292 atnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~r--------------------------------- 338 (404)
T KOG0728|consen 292 ATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTR--------------------------------- 338 (404)
T ss_pred eccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhc---------------------------------
Confidence 99999999999999999999999999999999999999999999988
Q ss_pred cccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhccCC
Q 011553 416 TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEG 476 (483)
Q Consensus 416 ~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~~~~ 476 (483)
.+++..++....|.||+++..+|++|++.|+++++..||++||+-|+.+++.+..+.
T Consensus 339 ----gi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm~k~~e~ 395 (404)
T KOG0728|consen 339 ----GINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 395 (404)
T ss_pred ----ccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHhccccc
Confidence 888999999999999999999999999999999999999999999999999876654
No 6
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-61 Score=448.56 Aligned_cols=344 Identities=50% Similarity=0.858 Sum_probs=326.4
Q ss_pred HHHHHHHHHHhhhCCCcccccceeccc---------------------CCeEEEecccCCceeEEeccccCccCCCCccE
Q 011553 97 KAEEDRSKVDDLRGSPMSVGNLEELID---------------------ENHAIVSSSVGPEYYVGILSFVDKDQLEPGCA 155 (483)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~e~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (483)
+.++-.++++--+..|..++.+.|+++ ...+++.++++..+|+.+...+|++.++||..
T Consensus 56 kIkeN~EkIk~Nk~LPYLV~NvvE~ld~~~~~~~e~sg~n~~ld~qrkgkcaViktStRqt~fLPvvGLvd~~~LkPgDL 135 (424)
T KOG0652|consen 56 KIKENTEKIKVNKQLPYLVSNVVELLDMDPNDDEEDSGANIDLDSQRKGKCAVIKTSTRQTYFLPVVGLVDPDKLKPGDL 135 (424)
T ss_pred HHHhhHHHhhccccCchHHhhHHHHhcCCcccchhccCCcccccccccceeEEEecccceeeeeeeecccChhhCCCcce
Confidence 444445666777778888887777776 22457788999999999999999999999999
Q ss_pred EEEeceeeeeeccccCcCcccccceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCC
Q 011553 156 ILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPG 235 (483)
Q Consensus 156 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppG 235 (483)
|.++++++.+++.++.+.+..+..|.++..|..+|+||+|++.++++|.+++.+|+.|++.|..+|+.+|+|+|+|||||
T Consensus 136 VgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPG 215 (424)
T KOG0652|consen 136 VGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPG 215 (424)
T ss_pred eeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHH
Q 011553 236 TGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM 315 (483)
Q Consensus 236 tGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l 315 (483)
||||++|||+|..+++.|+.+.+..+.+.|+|.+.+.+++.|..|...+|+||||||+|+++.+|+++...+++++|+++
T Consensus 216 TGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTM 295 (424)
T KOG0652|consen 216 TGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTM 295 (424)
T ss_pred CcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccc
Q 011553 316 LELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE 395 (483)
Q Consensus 316 ~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g 395 (483)
+++|+++|+|.+..+|.||++||+.+.+||+|+|+||+++.|+||.|+.+.|.+|+++|.++++..+
T Consensus 296 LELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~------------- 362 (424)
T KOG0652|consen 296 LELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSD------------- 362 (424)
T ss_pred HHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCC-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhccC
Q 011553 396 FSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 475 (483)
Q Consensus 396 ~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~~~ 475 (483)
++++++++..+++|+|++.+++|-+|++.|++++...|+.+||.+++-.++.+++-
T Consensus 363 ------------------------DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfmegI~eVqakKka 418 (424)
T KOG0652|consen 363 ------------------------DVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQAKKKA 418 (424)
T ss_pred ------------------------CCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHHHHHHHHHHHHHhhhh
Confidence 89999999999999999999999999999999999999999999999999988876
Q ss_pred CC
Q 011553 476 GV 477 (483)
Q Consensus 476 ~~ 477 (483)
..
T Consensus 419 ~l 420 (424)
T KOG0652|consen 419 SL 420 (424)
T ss_pred cc
Confidence 53
No 7
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=5.6e-55 Score=448.27 Aligned_cols=372 Identities=51% Similarity=0.884 Sum_probs=336.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcChhHHHHHHHHHHHHhhhCCCcccccceecccCCeEEEecccCCceeEEeccc
Q 011553 65 KLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSF 144 (483)
Q Consensus 65 ~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 144 (483)
+..+..++...+.+..+.+...... +...+...+.+++++.++..|..++++.+.++++++++.++.+..+++++.+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 98 (398)
T PTZ00454 21 YEKLKELEKELEFLDIQEEYIKEEQ--KNLKRELIRAKEEVKRIQSVPLVIGQFLEMIDSNYGIVSSTSGSNYYVRILST 98 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEEEEEEEcCCEEEEEcCCCCEEEEecccc
Confidence 3344444444444444433333322 22334556678889999999999999999999999999999999999999999
Q ss_pred cCccCCCCccEEEEeceeeeeeccccCcCcccccceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCC
Q 011553 145 VDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKP 224 (483)
Q Consensus 145 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~ 224 (483)
++++.++||+.|.++..+...+..++.+.++....+.+...|.++|+||+|++.++++|++.+.+|+.+|++|..+|+.+
T Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~ 178 (398)
T PTZ00454 99 LNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDP 178 (398)
T ss_pred cCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCC
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCC
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAH 304 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~ 304 (483)
|+|+|||||||||||++|+++|++++.+|+.+.++++..+|.|+++..++.+|..|....|+||||||+|.++.++.+..
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~ 258 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ 258 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887766
Q ss_pred CCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCccc
Q 011553 305 SGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDV 384 (483)
Q Consensus 305 ~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~ 384 (483)
++.+.+.++.+.+++..++++....+++||+|||+++.+|++++|||||++.|+|+.|+.++|..||+.++.++.+..
T Consensus 259 ~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~-- 336 (398)
T PTZ00454 259 TGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE-- 336 (398)
T ss_pred CCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc--
Confidence 667778899999999999998888899999999999999999999999999999999999999999999999888766
Q ss_pred chHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHH
Q 011553 385 NLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKK 464 (483)
Q Consensus 385 ~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~ 464 (483)
++++..++..++||||+||.++|++|++.|+++++..|+.+||.+
T Consensus 337 -----------------------------------dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~ 381 (398)
T PTZ00454 337 -----------------------------------EVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEK 381 (398)
T ss_pred -----------------------------------ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Confidence 788899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccC
Q 011553 465 AKEKVMFKKKE 475 (483)
Q Consensus 465 Al~~~~~~~~~ 475 (483)
|+++++.+...
T Consensus 382 A~~~v~~~~~~ 392 (398)
T PTZ00454 382 GYKTVVRKTDR 392 (398)
T ss_pred HHHHHHhcccc
Confidence 99999876533
No 8
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-56 Score=416.72 Aligned_cols=327 Identities=47% Similarity=0.822 Sum_probs=299.3
Q ss_pred CcccccceecccCC----eEEEecccCCceeEEeccccCccCCCCccEEEEeceeeeeeccccCcCcccccceecccCCC
Q 011553 112 PMSVGNLEELIDEN----HAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPL 187 (483)
Q Consensus 112 ~~~~~~~~e~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (483)
|..+....++++.+ ..+++...-..+.++.-..+.+..++.|-+|-++++-+.+.--++...+|.+.+|.++..|.
T Consensus 94 plqvarctkii~~~~~d~~yvin~kqiakfvv~lg~~vsptdieegmrvgvdrnkyqi~lplppkidpsvtmm~veekpd 173 (435)
T KOG0729|consen 94 PLQVARCTKIISGNSEDPKYVINVKQIAKFVVGLGDRVSPTDIEEGMRVGVDRNKYQIQLPLPPKIDPSVTMMQVEEKPD 173 (435)
T ss_pred CceeheeeeecCCCCCCcceeeeHHHHHHHHhccccccCchhhhhhheecccccceeEeccCCCCCCCceeEEEeecCCC
Confidence 44555555554433 12233333334445555667777889999999999999988889999999999999999999
Q ss_pred CCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcC
Q 011553 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLG 267 (483)
Q Consensus 188 ~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g 267 (483)
++|+|++|..++++.|++.++.|+.||+.|-.+|+.+|+|||+|||||||||++|||+|+.+++.|+++-+|++.++|+|
T Consensus 174 vty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvg 253 (435)
T KOG0729|consen 174 VTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVG 253 (435)
T ss_pred cccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhh
Q 011553 268 DGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPAL 347 (483)
Q Consensus 268 ~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~al 347 (483)
++.++++.+|+.|+....||||+||||++++.|++...+++.++|++++++++++|+|++++++.|+++||+|+.|||+|
T Consensus 254 egarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpal 333 (435)
T KOG0729|consen 254 EGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPAL 333 (435)
T ss_pred hhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHH
Q 011553 348 LRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFV 427 (483)
Q Consensus 348 lr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la 427 (483)
+||||+++.++|.+||.+.|..||++|.+.|.... ++.++.++
T Consensus 334 lrpgrldrkvef~lpdlegrt~i~kihaksmsver-------------------------------------dir~ella 376 (435)
T KOG0729|consen 334 LRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVER-------------------------------------DIRFELLA 376 (435)
T ss_pred cCCcccccceeccCCcccccceeEEEecccccccc-------------------------------------chhHHHHH
Confidence 99999999999999999999999999999998877 78899999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhccC
Q 011553 428 MTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 475 (483)
Q Consensus 428 ~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~~~ 475 (483)
..+...+|++|+++|.+|++.|++..+...|..||.+|+.+++.....
T Consensus 377 rlcpnstgaeirsvcteagmfairarrk~atekdfl~av~kvvkgy~k 424 (435)
T KOG0729|consen 377 RLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNKVVKGYAK 424 (435)
T ss_pred hhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999976443
No 9
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=4.2e-51 Score=421.22 Aligned_cols=352 Identities=53% Similarity=0.916 Sum_probs=326.9
Q ss_pred hHHHHHHHHHHHHhhhCCCcccccceecccCCeEEEecccCCceeEEeccccCccCCCCccEEEEeceeeeeeccccCcC
Q 011553 94 QEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEV 173 (483)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 173 (483)
......+.+++++.++..|..++.+.+.++++..++..+.+..++++..++++...+++|..|.++......+..+++..
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~ 113 (389)
T PRK03992 34 LERELERLKSELEKLKSPPLIVATVLEVLDDGRVVVKSSGGPQFLVNVSPFIDREKLKPGARVALNQQSLAIVEVLPSEK 113 (389)
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEEEEeCCCeEEEEECCCCEEEEeccccCCHhHCCCCCEEEEcCcchhhhhcccccc
Confidence 34455677888999999999999999999999999999999999999999999999999999999998888889999998
Q ss_pred cccccceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCce
Q 011553 174 DPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATF 253 (483)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~ 253 (483)
++.+..+.+...|.++|+||+|+++++++|.+++..|+.++++|..+|+.+|+++|||||||||||++|+++|++++.+|
T Consensus 114 ~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~ 193 (389)
T PRK03992 114 DPRVQAMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF 193 (389)
T ss_pred cchhheeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE
Confidence 88877888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEE
Q 011553 254 LRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKV 333 (483)
Q Consensus 254 ~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~v 333 (483)
+.++++++...|.|+.+..++.+|..+....|+||||||+|.++..+.+...+++.+.++.+.+++.+++++...++++|
T Consensus 194 i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~V 273 (389)
T PRK03992 194 IRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKI 273 (389)
T ss_pred EEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEE
Confidence 99999999999999999999999999999999999999999999887666666677889999999999999888889999
Q ss_pred EEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhc
Q 011553 334 ILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTS 413 (483)
Q Consensus 334 I~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~ 413 (483)
|+|||+++.+|++++|||||++.|+|++|+.++|.+||+.++.++.+..
T Consensus 274 I~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~------------------------------- 322 (389)
T PRK03992 274 IAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD------------------------------- 322 (389)
T ss_pred EEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-------------------------------
Confidence 9999999999999999999999999999999999999999999887766
Q ss_pred cccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhccCC---CCCCCC
Q 011553 414 RMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEG---VPEGLY 482 (483)
Q Consensus 414 ~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~~~~---~~~~~~ 482 (483)
++++..++..++||+++||.++|++|++.|+++.+..|+.+||.+|++++....... .+.+||
T Consensus 323 ------~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~~~~~~~~~~~ 388 (389)
T PRK03992 323 ------DVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEKDSMEEPGVMF 388 (389)
T ss_pred ------cCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhccccccccccccccc
Confidence 678899999999999999999999999999999999999999999999998765443 456666
No 10
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-51 Score=425.24 Aligned_cols=253 Identities=46% Similarity=0.781 Sum_probs=239.0
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHH
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l 261 (483)
+...|.++|+||+|+++++++|++.|.+|+.||+.|.++|+.+|+|||||||||||||++|+|+|++.+.+|+.+.+.++
T Consensus 425 ~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL 504 (693)
T KOG0730|consen 425 LVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPEL 504 (693)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 262 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
+++|+|++++.++++|..|+..+||||||||||+++..|+.+.+ .-..+.|.+||++|||+....+|+||++||+|+
T Consensus 505 ~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd 581 (693)
T KOG0730|consen 505 FSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPD 581 (693)
T ss_pred HHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHHHHHcccccccCcEEEEeccCChh
Confidence 99999999999999999999999999999999999999863322 445789999999999999999999999999999
Q ss_pred CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccC
Q 011553 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDV 421 (483)
Q Consensus 342 ~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~ 421 (483)
.||+||+||||||++|+||+||.+.|.+||+.+++++++.+ ++
T Consensus 582 ~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~-------------------------------------~v 624 (693)
T KOG0730|consen 582 MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSE-------------------------------------DV 624 (693)
T ss_pred hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCc-------------------------------------cc
Confidence 99999999999999999999999999999999999999988 88
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHhhcc
Q 011553 422 NLEEFVMTKDEFSGADIKAICTEAGLLALRER--RMKVTHTDFKKAKEKVMFKKK 474 (483)
Q Consensus 422 ~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~--~~~it~ed~~~Al~~~~~~~~ 474 (483)
++.+|+..|+||||+||..+|++|+..|+++. ...|+.+||.+|++.+.....
T Consensus 625 dl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~~ 679 (693)
T KOG0730|consen 625 DLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSLT 679 (693)
T ss_pred cHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccCC
Confidence 99999999999999999999999999999875 678999999999998765543
No 11
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=2e-49 Score=406.67 Aligned_cols=339 Identities=56% Similarity=0.951 Sum_probs=319.0
Q ss_pred hHHHHHHHHHHHHhhhCCCcccccceecccCCeEEEecccCCceeEEeccccCccCCCCccEEEEeceeeeeeccccCcC
Q 011553 94 QEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEV 173 (483)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 173 (483)
.+++..+.+++++.++..|..++.+.+.+++...++.++.+..+++++.+++++..+++|+.|.++...+.++.++++..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~ 104 (364)
T TIGR01242 25 LERELERLRSEIERLRSPPLIVGTVLEVLDDNRVVVKSSTGPNFVVNVSAFIDRKSLKPGARVALNQQTLTIVDVLPTSK 104 (364)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEEEEecCCEEEEEeCCCCEEEEeccccCCHhHCCCCCEEEEcCCcceEEeeccccc
Confidence 34455667888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCce
Q 011553 174 DPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATF 253 (483)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~ 253 (483)
++....+.+...|.++|+||+|+++++++|++++..|+.+++.|..+|+.+|+|+|||||||||||++|+++|++++.+|
T Consensus 105 ~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~ 184 (364)
T TIGR01242 105 DPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF 184 (364)
T ss_pred ccccccceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE
Confidence 98888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEE
Q 011553 254 LRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKV 333 (483)
Q Consensus 254 ~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~v 333 (483)
+.+.++++...|.|+....++.+|..+....|+||||||+|.++..+.+...+++.+.++.+.+++.+++++...+++.|
T Consensus 185 ~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~v 264 (364)
T TIGR01242 185 IRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKV 264 (364)
T ss_pred EecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 99999999999999999999999999999999999999999998877666666677889999999999998877789999
Q ss_pred EEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhc
Q 011553 334 ILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTS 413 (483)
Q Consensus 334 I~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~ 413 (483)
|+|||+++.+|+++++||||++.|+|+.|+.++|.+||+.++..+.+..
T Consensus 265 I~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~------------------------------- 313 (364)
T TIGR01242 265 IAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE------------------------------- 313 (364)
T ss_pred EEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-------------------------------
Confidence 9999999999999999999999999999999999999999998877665
Q ss_pred cccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 011553 414 RMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKV 469 (483)
Q Consensus 414 ~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~ 469 (483)
++++..++..+.||+++||.++|++|++.|+++++..|+.+||.+|++++
T Consensus 314 ------~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 314 ------DVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred ------cCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 67888999999999999999999999999999999999999999999886
No 12
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-51 Score=387.98 Aligned_cols=335 Identities=44% Similarity=0.779 Sum_probs=316.5
Q ss_pred HHHhhhCCCcccccceecccCCeEEEecccCCceeEEeccccCccCCCCccEEEEeceeeeeeccccCcCcccccceecc
Q 011553 104 KVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVE 183 (483)
Q Consensus 104 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (483)
.++.++.....++.+.+.+++...++.++.++.|.++.-..+|+..+..|.++.++-+.+.++..++.+.+ ++-.|..+
T Consensus 46 d~kslqsvg~~~gevlk~l~~~~~iVK~s~Gpryvvg~~~~~D~~~i~~G~rv~ldittltIm~~lprevd-~vy~m~~e 124 (388)
T KOG0651|consen 46 DLKSLQSVGQIIGEVLKQLEDEKFIVKASSGPRYVVGCRRSVDKEKIARGTRVVLDITTLTIMRGLPREVD-LVYNMSHE 124 (388)
T ss_pred hHHHhhhcCchhHHHHhhccccceEeecCCCCcEEEEcccccchhhhccCceeeeeeeeeehhcccchHHH-HHHHhhhc
Confidence 46778888888999999999999999999999999999999999999999999999999999999999988 66677777
Q ss_pred cCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh
Q 011553 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (483)
Q Consensus 184 ~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~ 263 (483)
....++|++++|+-+++.++.+.+++|+.+|++|.++|+.+|++++||||||||||++|++||..++++|+.++++++.+
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCC
Q 011553 264 KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (483)
Q Consensus 264 ~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~l 343 (483)
+|.|++.+.+++.|..|+.+.|||||+||||++++.+....+..+++++++|.+|++++++++..++|.+|+|||+|+.|
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcccc
Confidence 99999999999999999999999999999999999998777888999999999999999999999999999999999999
Q ss_pred ChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCH
Q 011553 344 DPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNL 423 (483)
Q Consensus 344 d~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l 423 (483)
+|+|+||||+++.+++|.|+...|..|++.|...+..-. .++.
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~G-------------------------------------eid~ 327 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHG-------------------------------------EIDD 327 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccc-------------------------------------cccH
Confidence 999999999999999999999999999999988776554 7778
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhccCC
Q 011553 424 EEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEG 476 (483)
Q Consensus 424 ~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~~~~ 476 (483)
+++...+++|+++|+.++|++|.+.|+++.+..+..+||..+++++...++-+
T Consensus 328 eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~~~~kkle 380 (388)
T KOG0651|consen 328 EAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDFMKLVRKQADAKKLE 380 (388)
T ss_pred HHHHHHHhccChHHHhhhcccccccccchhhHHHhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999987765543
No 13
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-49 Score=403.69 Aligned_cols=258 Identities=40% Similarity=0.674 Sum_probs=235.5
Q ss_pred cccccceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCce
Q 011553 174 DPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATF 253 (483)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~ 253 (483)
.|..........|.++|+||+|+++++.+|..+|..|+.+|++|+.+|+..|.|||||||||||||+||+|+|++.+.+|
T Consensus 494 QPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NF 573 (802)
T KOG0733|consen 494 QPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANF 573 (802)
T ss_pred CcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCce
Confidence 33333445667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEE
Q 011553 254 LRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKV 333 (483)
Q Consensus 254 ~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~v 333 (483)
+.|.+.+|+++|+|++++.++++|..|+.++||||||||+|+|.+.|++.. .....+.+++||.+|||+..+.+|.|
T Consensus 574 isVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~v 650 (802)
T KOG0733|consen 574 ISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYV 650 (802)
T ss_pred EeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEE
Confidence 999999999999999999999999999999999999999999999996654 33456899999999999999999999
Q ss_pred EEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHc--CCCCCcccchHHHHhhccccchhhHHHHHHHHHHh
Q 011553 334 ILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS--RMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIH 411 (483)
Q Consensus 334 I~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~--~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~ 411 (483)
|++||+|+.+|||++|||||+..+++++|+.++|..|++.+++ +.++..
T Consensus 651 iaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~----------------------------- 701 (802)
T KOG0733|consen 651 IAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSS----------------------------- 701 (802)
T ss_pred EeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCc-----------------------------
Confidence 9999999999999999999999999999999999999999999 555555
Q ss_pred hccccccccCCHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHhc-------------C---CCccHHHHHHHHHHHHh
Q 011553 412 TSRMTLADDVNLEEFVMTKD--EFSGADIKAICTEAGLLALRER-------------R---MKVTHTDFKKAKEKVMF 471 (483)
Q Consensus 412 ~~~~~~~~~~~l~~la~~~~--g~s~~di~~l~~~A~~~A~~~~-------------~---~~it~ed~~~Al~~~~~ 471 (483)
++++++|+..+. ||||+||..||++|...|+++. + ..+|..||++|+.++.-
T Consensus 702 --------dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~p 771 (802)
T KOG0733|consen 702 --------DVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRP 771 (802)
T ss_pred --------ccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCC
Confidence 888888888766 9999999999999999999763 1 24778899999998763
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-47 Score=383.04 Aligned_cols=247 Identities=40% Similarity=0.639 Sum_probs=234.9
Q ss_pred CCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhh
Q 011553 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (483)
Q Consensus 185 ~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~ 264 (483)
.-.++|+|+.|.++++++|.|.+++ |..|..|.++|-+.|+||||+||||||||+||||||.+.+.|||+.++++|-..
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 3467899999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCC
Q 011553 265 YLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (483)
Q Consensus 265 ~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld 344 (483)
|+|.+.+.++++|..|+..+||||||||||+++.+|.... ......++++||.+||+|..+.+|+||++||.|+.||
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~---~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD---QHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH---HHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 9999999999999999999999999999999999984322 2267899999999999999999999999999999999
Q ss_pred hhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHH
Q 011553 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLE 424 (483)
Q Consensus 345 ~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~ 424 (483)
++|.||||||++|.+|.||...|.+||..|++++.++. ++|+.
T Consensus 454 ~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~-------------------------------------~VD~~ 496 (752)
T KOG0734|consen 454 KALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDE-------------------------------------DVDPK 496 (752)
T ss_pred HHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCccc-------------------------------------CCCHh
Confidence 99999999999999999999999999999999999887 88899
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhh
Q 011553 425 EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFK 472 (483)
Q Consensus 425 ~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~ 472 (483)
.||.-+.||+|+||.++++.|+..|...+...||+.||+.|-.+++..
T Consensus 497 iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDrIlMG 544 (752)
T KOG0734|consen 497 IIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDRILMG 544 (752)
T ss_pred HhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhheeec
Confidence 999999999999999999999999999999999999999999999864
No 15
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-45 Score=384.84 Aligned_cols=255 Identities=40% Similarity=0.680 Sum_probs=228.7
Q ss_pred ceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEec
Q 011553 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (483)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~ 258 (483)
....-+.|.++|+||+|++++|.+|.+.|.+||.||++|.. |+....|||||||||||||++|||||.+++.+|+.|.+
T Consensus 660 aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKG 738 (953)
T KOG0736|consen 660 AIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKG 738 (953)
T ss_pred hcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecC
Confidence 34455679999999999999999999999999999999976 78888999999999999999999999999999999999
Q ss_pred hHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCc--CCCCeEEEEE
Q 011553 259 SELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD--SRGDVKVILA 336 (483)
Q Consensus 259 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~--~~~~v~vI~t 336 (483)
.+++++|+|+++..+|++|+.|+..+|||||+||+|.++++|+.+.+++ .-+.|+..++|.++|++. +..+|.||+|
T Consensus 739 PELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSG-GVMDRVVSQLLAELDgls~~~s~~VFViGA 817 (953)
T KOG0736|consen 739 PELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSG-GVMDRVVSQLLAELDGLSDSSSQDVFVIGA 817 (953)
T ss_pred HHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcc-ccHHHHHHHHHHHhhcccCCCCCceEEEec
Confidence 9999999999999999999999999999999999999999997654332 246789999999999987 4568999999
Q ss_pred eCCCCCCChhhcCCCccceEEEcCCC-CHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccc
Q 011553 337 TNRIESLDPALLRPGRIDRKIEFPLP-DIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRM 415 (483)
Q Consensus 337 tn~~~~ld~allr~gR~~~~i~~~~P-~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~ 415 (483)
||+|+.|||+|+||||||..+++.++ |.+.+..+++..++++.+..
T Consensus 818 TNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLde--------------------------------- 864 (953)
T KOG0736|consen 818 TNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDE--------------------------------- 864 (953)
T ss_pred CCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCC---------------------------------
Confidence 99999999999999999999999877 56678889999999999888
Q ss_pred cccccCCHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHhc-----------------CCCccHHHHHHHHHHHHhh
Q 011553 416 TLADDVNLEEFVMTKD-EFSGADIKAICTEAGLLALRER-----------------RMKVTHTDFKKAKEKVMFK 472 (483)
Q Consensus 416 ~~~~~~~l~~la~~~~-g~s~~di~~l~~~A~~~A~~~~-----------------~~~it~ed~~~Al~~~~~~ 472 (483)
++++.++|..+. .+||+|+.+||..|++.|+++. ...|+++||-++.++..-.
T Consensus 865 ----dVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PS 935 (953)
T KOG0736|consen 865 ----DVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPS 935 (953)
T ss_pred ----CcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCc
Confidence 777888887744 7899999999999999999763 2469999999999887543
No 16
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-45 Score=357.15 Aligned_cols=249 Identities=41% Similarity=0.650 Sum_probs=225.0
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHH
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l 261 (483)
+...|.+.|+||.|++++++-|+|+|.+|+..|++|+.+ ..|-+|||++||||||||+||+|||.+++..||.|+.+.+
T Consensus 203 l~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl 281 (491)
T KOG0738|consen 203 LQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL 281 (491)
T ss_pred hccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhh
Confidence 446788999999999999999999999999999999975 4778999999999999999999999999999999999999
Q ss_pred HhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCC-CC---eEEEEEe
Q 011553 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSR-GD---VKVILAT 337 (483)
Q Consensus 262 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~-~~---v~vI~tt 337 (483)
.++|.|+++++++-+|+.|+..+|++|||||||.|+.+|+.+ +.+....+...+||.+|||.... .+ |+|+++|
T Consensus 282 tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738|consen 282 TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359 (491)
T ss_pred hhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEecc
Confidence 999999999999999999999999999999999999998543 34455667778999999987543 23 8999999
Q ss_pred CCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccc
Q 011553 338 NRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTL 417 (483)
Q Consensus 338 n~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~ 417 (483)
|.|++||.||+| ||...|++|+|+.+.|..++++.+....+.+
T Consensus 360 N~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~----------------------------------- 402 (491)
T KOG0738|consen 360 NFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDD----------------------------------- 402 (491)
T ss_pred CCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCC-----------------------------------
Confidence 999999999999 9999999999999999999999999988877
Q ss_pred cccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhc-----------------CCCccHHHHHHHHHHHHhh
Q 011553 418 ADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER-----------------RMKVTHTDFKKAKEKVMFK 472 (483)
Q Consensus 418 ~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~-----------------~~~it~ed~~~Al~~~~~~ 472 (483)
+++++.++..++||||+||.++|++|.+.++++. ...|+.+||++|+.++...
T Consensus 403 --~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pS 472 (491)
T KOG0738|consen 403 --PVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPS 472 (491)
T ss_pred --CccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcC
Confidence 7888899999999999999999999999998752 2469999999999987543
No 17
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-44 Score=382.14 Aligned_cols=253 Identities=45% Similarity=0.747 Sum_probs=237.8
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 183 ~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
+....++|.|+.|+++++++|.|+|.. |.+|+.|.++|++.|+|+||+||||||||+||+|+|.+.+.||+.++++++.
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 344558999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccC-CCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 263 QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYD-AHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 263 ~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~-~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
..++|.....++++|..|+.++||||||||||+++.+|.. ...+++.+-..+|+++|.+||++....+|+|+++||+++
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d 461 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPD 461 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcc
Confidence 9999999999999999999999999999999999998842 344667788899999999999999999999999999999
Q ss_pred CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccC
Q 011553 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDV 421 (483)
Q Consensus 342 ~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~ 421 (483)
.+|++|+||||||+.|.++.|+...|.+|++.|++..++..+ ++
T Consensus 462 ~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e------------------------------------~~ 505 (774)
T KOG0731|consen 462 ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDE------------------------------------DV 505 (774)
T ss_pred ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcc------------------------------------hh
Confidence 999999999999999999999999999999999999888632 77
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhh
Q 011553 422 NLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFK 472 (483)
Q Consensus 422 ~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~ 472 (483)
++..++..|.||+|+||.++|.+|+..|.++....|+.+||.+|+++++..
T Consensus 506 dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 506 DLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAG 556 (774)
T ss_pred hHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhcc
Confidence 888899999999999999999999999999999999999999999988754
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=3.1e-43 Score=327.66 Aligned_cols=304 Identities=32% Similarity=0.482 Sum_probs=252.8
Q ss_pred ecccCCeEEEecccCCceeEEeccccCccCCCCccEEEEeceeeeeeccccCcCcccccceecccCCCCCcccccccHHH
Q 011553 120 ELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQ 199 (483)
Q Consensus 120 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~ 199 (483)
+.+.++..++....-++|...+......+.. ..++++...+ .-+. ....+..+..+++|++|++++
T Consensus 64 e~v~eg~ylFD~~~~pdyAfkvI~~~P~~~~------i~~st~i~vl-~~~~-------~~~~e~~~~it~ddViGqEeA 129 (368)
T COG1223 64 EVVREGDYLFDTRMFPDYAFKVIRVVPSGGG------IITSTTIFVL-ETPR-------EEDREIISDITLDDVIGQEEA 129 (368)
T ss_pred eeeecCceEeecccccccceeEEEEeCCCCc------eecceEEEEe-cCcc-------hhhhhhhccccHhhhhchHHH
Confidence 4567788888888889988888776543321 1111111111 1111 112245677899999999999
Q ss_pred HHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHH
Q 011553 200 IQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRV 279 (483)
Q Consensus 200 ~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~ 279 (483)
++..+-.+.+ |.+|+.|.. ..|++||||||||||||++|+|+|+++..||+.+.+.++++.++|.+.+.++++|..
T Consensus 130 K~kcrli~~y-LenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~r 205 (368)
T COG1223 130 KRKCRLIMEY-LENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYER 205 (368)
T ss_pred HHHHHHHHHH-hhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHH
Confidence 9987766665 788888865 569999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEc
Q 011553 280 ADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEF 359 (483)
Q Consensus 280 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~ 359 (483)
|+..+|||+||||+|+++-.|.-. .-..++....+.||.++|++..+.+|+.|++||+|+.||+++++ ||...|+|
T Consensus 206 A~~~aPcivFiDE~DAiaLdRryQ--elRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeEIEF 281 (368)
T COG1223 206 ARKAAPCIVFIDELDAIALDRRYQ--ELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEEIEF 281 (368)
T ss_pred HHhcCCeEEEehhhhhhhhhhhHH--HhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhheeee
Confidence 999999999999999998654221 12345678889999999999999999999999999999999999 99999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHH
Q 011553 360 PLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIK 439 (483)
Q Consensus 360 ~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~ 439 (483)
.+|+.++|..|++.+...+++.- +.++..++..+.|+||+||.
T Consensus 282 ~LP~~eEr~~ile~y~k~~Plpv-------------------------------------~~~~~~~~~~t~g~SgRdik 324 (368)
T COG1223 282 KLPNDEERLEILEYYAKKFPLPV-------------------------------------DADLRYLAAKTKGMSGRDIK 324 (368)
T ss_pred eCCChHHHHHHHHHHHHhCCCcc-------------------------------------ccCHHHHHHHhCCCCchhHH
Confidence 99999999999999999999877 67788899999999999997
Q ss_pred H-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhccCCCCCCCCC
Q 011553 440 A-ICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEGLYM 483 (483)
Q Consensus 440 ~-l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~~~~~~~~~~~ 483 (483)
. ++..|.+.|+.+++..|+.+||+.|+++ ..+.....|.-||.
T Consensus 325 ekvlK~aLh~Ai~ed~e~v~~edie~al~k-~r~~r~~~p~h~~~ 368 (368)
T COG1223 325 EKVLKTALHRAIAEDREKVEREDIEKALKK-ERKRRAPRPKHLYV 368 (368)
T ss_pred HHHHHHHHHHHHHhchhhhhHHHHHHHHHh-hccccCCCcccccC
Confidence 6 8999999999999999999999999998 44455555777774
No 19
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-43 Score=356.82 Aligned_cols=224 Identities=40% Similarity=0.703 Sum_probs=200.4
Q ss_pred CCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhc
Q 011553 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYL 266 (483)
Q Consensus 187 ~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~ 266 (483)
.++|.||+|++.+..+|.+.+.. +.+|+.|..+|+.||+|||||||||||||+||+|||++++.||+.+++.++++.+.
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 67999999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHH-HHHHHHHHHhccCCcCC----CCeEEEEEeCCCC
Q 011553 267 GDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREI-QRTMLELLNQLDGFDSR----GDVKVILATNRIE 341 (483)
Q Consensus 267 g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~-~~~l~~lL~~l~~~~~~----~~v~vI~ttn~~~ 341 (483)
|++++.++++|+.|....|||+||||||+++++|.. ..+++ ++++.+||..||++... .+|+||+|||+|+
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~----aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE----AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD 340 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhh----HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc
Confidence 999999999999999999999999999999999843 34444 45667888888876543 5799999999999
Q ss_pred CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccC
Q 011553 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDV 421 (483)
Q Consensus 342 ~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~ 421 (483)
.|||+|+|+|||++.|.+..|+..+|.+||+..++++.+.. ++
T Consensus 341 slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-------------------------------------~~ 383 (802)
T KOG0733|consen 341 SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-------------------------------------DF 383 (802)
T ss_pred ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-------------------------------------Cc
Confidence 99999999999999999999999999999999999999988 55
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 011553 422 NLEEFVMTKDEFSGADIKAICTEAGLLALRE 452 (483)
Q Consensus 422 ~l~~la~~~~g~s~~di~~l~~~A~~~A~~~ 452 (483)
++..||..|.||.|+||.+||.+|+..|+++
T Consensus 384 d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 384 DFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred CHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 6666666666677777777777777766654
No 20
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-42 Score=362.90 Aligned_cols=252 Identities=44% Similarity=0.728 Sum_probs=242.4
Q ss_pred cCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh
Q 011553 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (483)
Q Consensus 184 ~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~ 263 (483)
....++|+|+.|.+++++++.+.|.. +.+|.-|..+|...|+|+||+||||||||+||+|+|.+.+.||+.++++++..
T Consensus 143 ~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 143 DQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred cccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 45678999999999999999999887 99999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCC
Q 011553 264 KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (483)
Q Consensus 264 ~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~l 343 (483)
.|+|.+...+|++|..|+.++||||||||||+++.+|.....+++.+..++++++|.++|++..+..|++|++||+|+.+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVl 301 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVL 301 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccc
Confidence 99999999999999999999999999999999999998777788889999999999999999988899999999999999
Q ss_pred ChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCH
Q 011553 344 DPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNL 423 (483)
Q Consensus 344 d~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l 423 (483)
|+||+|||||++.|.++.||...|.+|++.|..+.+++. ++++
T Consensus 302 D~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~-------------------------------------~Vdl 344 (596)
T COG0465 302 DPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAE-------------------------------------DVDL 344 (596)
T ss_pred hHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCC-------------------------------------cCCH
Confidence 999999999999999999999999999999999999887 8888
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhc
Q 011553 424 EEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKK 473 (483)
Q Consensus 424 ~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~ 473 (483)
..++..+.|++|+++.+++.+|+..|.++++..|++.||.+|+.+++...
T Consensus 345 ~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~ 394 (596)
T COG0465 345 KKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGP 394 (596)
T ss_pred HHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCc
Confidence 88999999999999999999999999999999999999999999999753
No 21
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=1.4e-41 Score=355.73 Aligned_cols=347 Identities=34% Similarity=0.507 Sum_probs=283.8
Q ss_pred cccceecccCCeEEEecccCCceeEEeccccCccCCCCccEEEEeceeeeeeccccCcCcccccceecccCCCCCccccc
Q 011553 115 VGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIG 194 (483)
Q Consensus 115 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~ 194 (483)
+..+.|.++++.+++..+.+.++++.+...+....+++|.++.++.........++.. ....+-++..|.++|+||+
T Consensus 109 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~p~v~~~dIg 185 (512)
T TIGR03689 109 IATLKEVLGDGRALVVDHSGEERVVKLAGALADELIRAGDSLLVDPKAGYAFEAVPKA---EVEDLVLEEVPDVTYADIG 185 (512)
T ss_pred eEEEEEEeCCCeEEEEeCCCCeEEeehhhhhCHhhCCCCCEEEEcccchhhhhcCCHh---HHhcceeecCCCCCHHHcC
Confidence 3467788999999999999999999999999999999999999988766655555532 1234456788999999999
Q ss_pred ccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC----------ceEEEechHHHhh
Q 011553 195 GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA----------TFLRVVGSELIQK 264 (483)
Q Consensus 195 Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~----------~~~~v~~~~l~~~ 264 (483)
|+++++++|++.+..|+.++++|..+|+.+|+|+|||||||||||++|+++|++++. .|+.+.++++..+
T Consensus 186 Gl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~k 265 (512)
T TIGR03689 186 GLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNK 265 (512)
T ss_pred ChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhccc
Confidence 999999999999999999999999999999999999999999999999999999854 3777888999999
Q ss_pred hcCCchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCC
Q 011553 265 YLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (483)
Q Consensus 265 ~~g~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~ 340 (483)
|.|+++..++.+|..++.. .|+||||||+|.++..+....++ ......+.++|..++++...++++||+|||++
T Consensus 266 yvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~--d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~ 343 (512)
T TIGR03689 266 YVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSS--DVETTVVPQLLSELDGVESLDNVIVIGASNRE 343 (512)
T ss_pred ccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccc--hHHHHHHHHHHHHhcccccCCceEEEeccCCh
Confidence 9999999999999988764 69999999999999877432221 12245667899999998888899999999999
Q ss_pred CCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcC-CCCCcccchHHHHhhccccchhhHHHHHHHHHHhhcc-----
Q 011553 341 ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR-MTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSR----- 414 (483)
Q Consensus 341 ~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~-~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~----- 414 (483)
+.|||+++|||||+.+|+|++|+.++|.+||+.++.. +++ ...+....|++..++..++..+....-.
T Consensus 344 d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l------~~~l~~~~g~~~a~~~al~~~av~~~~a~~~~~ 417 (512)
T TIGR03689 344 DMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL------DADLAEFDGDREATAAALIQRAVDHLYATSEEN 417 (512)
T ss_pred hhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc------hHHHHHhcCCCHHHHHHHHHHHHHHHhhhhccc
Confidence 9999999999999999999999999999999999864 233 2234557899999988875554221110
Q ss_pred --ccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh----cCCCccHHHHHHHHHHHHhh
Q 011553 415 --MTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE----RRMKVTHTDFKKAKEKVMFK 472 (483)
Q Consensus 415 --~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~----~~~~it~ed~~~Al~~~~~~ 472 (483)
+.+...-...+....++.+||++|.++|.+|...|+++ +...|+.+|+..|+..-...
T Consensus 418 ~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~ 481 (512)
T TIGR03689 418 RYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRE 481 (512)
T ss_pred ceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcc
Confidence 10000111234556788999999999999999999976 34689999999999877643
No 22
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-39 Score=344.77 Aligned_cols=248 Identities=50% Similarity=0.790 Sum_probs=229.0
Q ss_pred cCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh
Q 011553 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (483)
Q Consensus 184 ~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~ 263 (483)
..+.++|.|++|++.+++.+++.+.+|+.+++.|...++.+++|+|||||||||||+||+++|++++.+|+.+.++++.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCC
Q 011553 264 KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (483)
Q Consensus 264 ~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~l 343 (483)
+|+|++++.++.+|..|+..+||||||||+|+++..+.....+. ..+.+.+++.+++++....+|+||+|||+|+.+
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~---~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~l 391 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGS---GRRVVGQLLTELDGIEKAEGVLVIAATNRPDDL 391 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchH---HHHHHHHHHHHhcCCCccCceEEEecCCCcccc
Confidence 99999999999999999999999999999999998885433222 258889999999999889999999999999999
Q ss_pred ChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCH
Q 011553 344 DPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNL 423 (483)
Q Consensus 344 d~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l 423 (483)
|++++|||||+..++|++||.++|.+||+.++....... .+++++
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~-----------------------------------~~~~~~ 436 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPL-----------------------------------AEDVDL 436 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcc-----------------------------------hhhhhH
Confidence 999999999999999999999999999999998654321 017889
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHH
Q 011553 424 EEFVMTKDEFSGADIKAICTEAGLLALRER-RMKVTHTDFKKAKEKV 469 (483)
Q Consensus 424 ~~la~~~~g~s~~di~~l~~~A~~~A~~~~-~~~it~ed~~~Al~~~ 469 (483)
..++..++||+++||..+|++|.+.|+++. ...||.+||.+|++.+
T Consensus 437 ~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~ 483 (494)
T COG0464 437 EELAEITEGYSGADIAALVREAALEALREARRREVTLDDFLDALKKI 483 (494)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhc
Confidence 999999999999999999999999999988 7889999999999984
No 23
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-40 Score=312.81 Aligned_cols=214 Identities=38% Similarity=0.665 Sum_probs=184.0
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHH
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l 261 (483)
+...|.+.|+|+.|++.+++.|+++|.+|+..|.+|..- -.+-+|+|||||||||||+||+|+|.+.+..||.|+.+++
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk-R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK-RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC-CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 457899999999999999999999999999999999752 3567899999999999999999999999999999999999
Q ss_pred HhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcC-CCCeEEEEEeCCC
Q 011553 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS-RGDVKVILATNRI 340 (483)
Q Consensus 262 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~-~~~v~vI~ttn~~ 340 (483)
.++|.|++++.++++|+.|+++.|+||||||||.+++.|.+..+. ...++..++|-+|.+... ..+|+|+++||-|
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEse---asRRIKTEfLVQMqGVG~d~~gvLVLgATNiP 279 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESE---ASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP 279 (439)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchH---HHHHHHHHHHHhhhccccCCCceEEEecCCCc
Confidence 999999999999999999999999999999999999888654433 334666788888888754 4579999999999
Q ss_pred CCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCc-ccchHHHHhhccccchhhH
Q 011553 341 ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD-DVNLEEFVMTKDEFSGADI 401 (483)
Q Consensus 341 ~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~t~g~~~~~i 401 (483)
+.||.+++| ||+..|++|+|+...|..+|+.|+...+... ..|+.+++..|+||++.||
T Consensus 280 w~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDi 339 (439)
T KOG0739|consen 280 WVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDI 339 (439)
T ss_pred hhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCce
Confidence 999999999 9999999999999999999999998776542 2334444444444444443
No 24
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-39 Score=332.31 Aligned_cols=226 Identities=38% Similarity=0.657 Sum_probs=210.9
Q ss_pred CCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhc
Q 011553 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYL 266 (483)
Q Consensus 187 ~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~ 266 (483)
...|.||+|+.++++.|.+.+.+|...|.+|...+++.+.|||||||||||||+||-++|..++..|+.+.+.++.++|+
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChh
Q 011553 267 GDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPA 346 (483)
Q Consensus 267 g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~a 346 (483)
|.++..+|++|..|+...|||+|+||+|.++++|+....|.. .+..+++|.+|||...-.+|.|+++|.+|+.+|||
T Consensus 743 GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVT---DRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpA 819 (952)
T KOG0735|consen 743 GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVT---DRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPA 819 (952)
T ss_pred cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCch---HHHHHHHHHhhccccccceEEEEEecCCccccCHh
Confidence 999999999999999999999999999999999976655543 58889999999999888999999999999999999
Q ss_pred hcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHH
Q 011553 347 LLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEF 426 (483)
Q Consensus 347 llr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~l 426 (483)
|+||||+|+.++.+.|+..+|.+|++.......++. +++++-+
T Consensus 820 LLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~-------------------------------------~vdl~~~ 862 (952)
T KOG0735|consen 820 LLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDT-------------------------------------DVDLECL 862 (952)
T ss_pred hcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCcc-------------------------------------ccchHHH
Confidence 999999999999999999999999999988887777 7778888
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHh
Q 011553 427 VMTKDEFSGADIKAICTEAGLLALRE 452 (483)
Q Consensus 427 a~~~~g~s~~di~~l~~~A~~~A~~~ 452 (483)
+..|+||||+||.+||..|-+.|+.+
T Consensus 863 a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 863 AQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred hhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 88888888888888888888877753
No 25
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=8.3e-39 Score=355.09 Aligned_cols=250 Identities=49% Similarity=0.820 Sum_probs=228.1
Q ss_pred cCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh
Q 011553 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (483)
Q Consensus 184 ~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~ 263 (483)
..|.++|+||+|++.+++.|.+.+.+|+.++++|..+|+.+++|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 446 ~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~ 525 (733)
T TIGR01243 446 EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS 525 (733)
T ss_pred cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCC
Q 011553 264 KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (483)
Q Consensus 264 ~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~l 343 (483)
+|+|+++..++.+|..|+...||||||||||.++..+..... .....+.+.++|.+++++....+++||+|||+|+.+
T Consensus 526 ~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~--~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~l 603 (733)
T TIGR01243 526 KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD--TSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDIL 603 (733)
T ss_pred cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC--ccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhC
Confidence 999999999999999999999999999999999987743222 224567888899999998888899999999999999
Q ss_pred ChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCH
Q 011553 344 DPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNL 423 (483)
Q Consensus 344 d~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l 423 (483)
|++++|||||++.|+|++|+.++|.+||+.++.++++.. ++++
T Consensus 604 d~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~-------------------------------------~~~l 646 (733)
T TIGR01243 604 DPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAE-------------------------------------DVDL 646 (733)
T ss_pred CHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCc-------------------------------------cCCH
Confidence 999999999999999999999999999999998887766 7788
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHhc------------------CCCccHHHHHHHHHHHHhh
Q 011553 424 EEFVMTKDEFSGADIKAICTEAGLLALRER------------------RMKVTHTDFKKAKEKVMFK 472 (483)
Q Consensus 424 ~~la~~~~g~s~~di~~l~~~A~~~A~~~~------------------~~~it~ed~~~Al~~~~~~ 472 (483)
..++..++||||+||.++|++|+..|+++. ...|+.+||.+|++++...
T Consensus 647 ~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps 713 (733)
T TIGR01243 647 EELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPS 713 (733)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCC
Confidence 899999999999999999999999998742 1269999999999876543
No 26
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-39 Score=313.53 Aligned_cols=241 Identities=40% Similarity=0.685 Sum_probs=212.7
Q ss_pred CCcccccccHHHHHHHHHHHhcCCCChhhhhhhC-CCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhc
Q 011553 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIG-IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYL 266 (483)
Q Consensus 188 ~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g-~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~ 266 (483)
++|+||+|++.+++++.+.|.+|+.+|++|..-+ ..+++|||||||||||||++|+|+|++.+++|+.|..+.+.++|.
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 6899999999999999999999999999996433 578999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCC--eEEEEEeCCCCCCC
Q 011553 267 GDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD--VKVILATNRIESLD 344 (483)
Q Consensus 267 g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~--v~vI~ttn~~~~ld 344 (483)
|+..+.++.+|..|...+|+||||||+|.+...| .++.+......-.+++..+||+.+.++ |+|++|||+|.++|
T Consensus 169 gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R---~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlD 245 (386)
T KOG0737|consen 169 GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR---RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLD 245 (386)
T ss_pred HHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc---ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHH
Confidence 9999999999999999999999999999999887 244455566666789999999987665 99999999999999
Q ss_pred hhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHH
Q 011553 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLE 424 (483)
Q Consensus 345 ~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~ 424 (483)
.+++| |+++.++++.|+..+|.+|++..+....+.+ ++|+.
T Consensus 246 eAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~-------------------------------------~vD~~ 286 (386)
T KOG0737|consen 246 EAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLED-------------------------------------DVDLD 286 (386)
T ss_pred HHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCc-------------------------------------ccCHH
Confidence 99999 9999999999999999999999999998887 67777
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHh----c------------------------CCCccHHHHHHHHHHHH
Q 011553 425 EFVMTKDEFSGADIKAICTEAGLLALRE----R------------------------RMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 425 ~la~~~~g~s~~di~~l~~~A~~~A~~~----~------------------------~~~it~ed~~~Al~~~~ 470 (483)
+++..++||||+||..+|+.|....+++ + ...++++||..|+..+-
T Consensus 287 ~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~ 360 (386)
T KOG0737|consen 287 EIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVS 360 (386)
T ss_pred HHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhh
Confidence 7777777777777777777777666543 1 24678899999988553
No 27
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=3.2e-38 Score=335.99 Aligned_cols=253 Identities=43% Similarity=0.727 Sum_probs=232.9
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHH
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l 261 (483)
....|.++|+||+|++++++++.+.+.. +.+++.|..+|...++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 3456789999999999999999998886 899999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 262 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
...+.|.....++.+|..|....|+||||||||.++..+....++.+.+..+++.++|.+++++....+++||+|||+++
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~ 204 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPD 204 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChh
Confidence 99999999999999999999999999999999999987755444556667788999999999998888999999999999
Q ss_pred CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccC
Q 011553 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDV 421 (483)
Q Consensus 342 ~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~ 421 (483)
.+|++++|||||++.|+|+.|+.++|.+||+.++....+.. ++
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~-------------------------------------~~ 247 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP-------------------------------------DV 247 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc-------------------------------------ch
Confidence 99999999999999999999999999999999998776554 67
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhh
Q 011553 422 NLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFK 472 (483)
Q Consensus 422 ~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~ 472 (483)
++..++..+.|||++||.++|++|...|.+++...|+.+||..|++++...
T Consensus 248 ~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~ 298 (495)
T TIGR01241 248 DLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAG 298 (495)
T ss_pred hHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc
Confidence 788999999999999999999999999988888899999999999998753
No 28
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=3.6e-37 Score=332.29 Aligned_cols=251 Identities=42% Similarity=0.699 Sum_probs=230.9
Q ss_pred cCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh
Q 011553 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (483)
Q Consensus 184 ~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~ 263 (483)
..+.++|+||+|++++++++.+.+.. +.+++.|..+|...++|+||+||||||||++|+++|++++.+|+.++++++..
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 34567999999999999999998876 88999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCC
Q 011553 264 KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (483)
Q Consensus 264 ~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~l 343 (483)
.+.|.....++.+|..|....||||||||||.++..+.....+.+.+.+.++.++|.+++++....+++||+|||+++.+
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~L 334 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDIL 334 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhh
Confidence 99998888999999999999999999999999998776555566777888999999999998888899999999999999
Q ss_pred ChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCH
Q 011553 344 DPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNL 423 (483)
Q Consensus 344 d~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l 423 (483)
|++++|||||++.|.|+.|+.++|.+||+.++....+.. ++++
T Consensus 335 D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~-------------------------------------d~~l 377 (638)
T CHL00176 335 DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP-------------------------------------DVSL 377 (638)
T ss_pred hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch-------------------------------------hHHH
Confidence 999999999999999999999999999999998755444 6678
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhh
Q 011553 424 EEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFK 472 (483)
Q Consensus 424 ~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~ 472 (483)
..++..+.||+++||.++|++|+..|.+++...||.+||.+|+++++..
T Consensus 378 ~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g 426 (638)
T CHL00176 378 ELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAG 426 (638)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhh
Confidence 8899999999999999999999999999899999999999999998654
No 29
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.7e-36 Score=316.35 Aligned_cols=243 Identities=30% Similarity=0.464 Sum_probs=206.3
Q ss_pred CCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhh
Q 011553 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 265 (483)
Q Consensus 186 ~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~ 265 (483)
+..+|+||+|++.+++.+.+..... ......+|+..|+|+|||||||||||++|+++|++++.+|+.++++.+.++|
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 5678999999999999998765432 2344667899999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCCh
Q 011553 266 LGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDP 345 (483)
Q Consensus 266 ~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~ 345 (483)
+|+++..++.+|..|...+||||||||||.++..+... +......+.+..++..++. ...+|+||+|||+++.+|+
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPL 375 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCH
Confidence 99999999999999999999999999999998654221 1122344555566665553 3467999999999999999
Q ss_pred hhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHH
Q 011553 346 ALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEE 425 (483)
Q Consensus 346 allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~ 425 (483)
+++|+|||+++++|+.|+.++|.+||+.++.+...... .+.++..
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~-----------------------------------~~~dl~~ 420 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSW-----------------------------------KKYDIKK 420 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcc-----------------------------------cccCHHH
Confidence 99999999999999999999999999999987643210 0677899
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 011553 426 FVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMF 471 (483)
Q Consensus 426 la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~ 471 (483)
++..+.||||+||.++|.+|...|..+++ .++.+||..|++++.-
T Consensus 421 La~~T~GfSGAdI~~lv~eA~~~A~~~~~-~lt~~dl~~a~~~~~P 465 (489)
T CHL00195 421 LSKLSNKFSGAEIEQSIIEAMYIAFYEKR-EFTTDDILLALKQFIP 465 (489)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhcCC
Confidence 99999999999999999999999987664 5899999999988763
No 30
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=7.2e-35 Score=317.55 Aligned_cols=250 Identities=41% Similarity=0.720 Sum_probs=230.4
Q ss_pred CCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhh
Q 011553 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (483)
Q Consensus 185 ~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~ 264 (483)
....+|.|+.|.+..+.++.+.+.. +..+..+..++...++|+||+||||||||++++++|++++.+|+.++++++...
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~ 224 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 224 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh
Confidence 3456899999999999999998887 677888888888899999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCC
Q 011553 265 YLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (483)
Q Consensus 265 ~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld 344 (483)
+.|.....++.+|..+....||||||||+|.++.++.....+++.+..+++.++|.+++++....+++||+|||+++.+|
T Consensus 225 ~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD 304 (644)
T PRK10733 225 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304 (644)
T ss_pred hhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcC
Confidence 99999999999999999999999999999999988765555566677789999999999998888999999999999999
Q ss_pred hhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHH
Q 011553 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLE 424 (483)
Q Consensus 345 ~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~ 424 (483)
++++|||||++.|.|+.|+.++|.+||+.|+...++.. ++++.
T Consensus 305 ~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~-------------------------------------~~d~~ 347 (644)
T PRK10733 305 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-------------------------------------DIDAA 347 (644)
T ss_pred HHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC-------------------------------------cCCHH
Confidence 99999999999999999999999999999999888766 67788
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhh
Q 011553 425 EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFK 472 (483)
Q Consensus 425 ~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~ 472 (483)
.++..+.|||++||.++|++|+..|.++++..|+.+||.+|+.++...
T Consensus 348 ~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 348 IIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhcc
Confidence 899999999999999999999999999999999999999999988653
No 31
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=1.4e-34 Score=327.07 Aligned_cols=221 Identities=19% Similarity=0.324 Sum_probs=186.5
Q ss_pred hcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhh----------cC----------
Q 011553 208 ELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY----------LG---------- 267 (483)
Q Consensus 208 ~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~----------~g---------- 267 (483)
..|......+.++|+.+|+||||+||||||||+||+|+|.++++||+.++++++...+ +|
T Consensus 1613 ~~~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~ 1692 (2281)
T CHL00206 1613 HFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDD 1692 (2281)
T ss_pred cCcccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccc
Confidence 3445556778889999999999999999999999999999999999999999998754 11
Q ss_pred ---------------------CchH--HHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccC
Q 011553 268 ---------------------DGPK--LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG 324 (483)
Q Consensus 268 ---------------------~~~~--~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~ 324 (483)
.... .++.+|+.|+..+||||||||||+++.+. .. ..++..++++|++
T Consensus 1693 ~~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d-------s~--~ltL~qLLneLDg 1763 (2281)
T CHL00206 1693 IDRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE-------SN--YLSLGLLVNSLSR 1763 (2281)
T ss_pred cccccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc-------cc--eehHHHHHHHhcc
Confidence 1222 37889999999999999999999997542 10 1246677788887
Q ss_pred Cc---CCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHH--HcCCCCCcccchHHHHhhccccchh
Q 011553 325 FD---SRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIH--TSRMTLADDVNLEEFVMTKDEFSGA 399 (483)
Q Consensus 325 ~~---~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~--~~~~~~~~~~~l~~la~~t~g~~~~ 399 (483)
.. ...+|+||||||+|+.|||||+|||||++.|+++.|+..+|.+++..+ +.+..+..+
T Consensus 1764 ~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~---------------- 1827 (2281)
T CHL00206 1764 DCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKK---------------- 1827 (2281)
T ss_pred ccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcc----------------
Confidence 53 356899999999999999999999999999999999999999988854 344444331
Q ss_pred hHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhc
Q 011553 400 DIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKK 473 (483)
Q Consensus 400 ~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~ 473 (483)
.+++..+|..|.|||||||.++|++|+..|+++++..|+.+||..|+.+++...
T Consensus 1828 --------------------~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~ 1881 (2281)
T CHL00206 1828 --------------------MFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDL 1881 (2281)
T ss_pred --------------------cccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhh
Confidence 457889999999999999999999999999999999999999999999998653
No 32
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-34 Score=293.63 Aligned_cols=252 Identities=39% Similarity=0.596 Sum_probs=215.5
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHH
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l 261 (483)
....+.+.|+|+.|++.+++.+.+++.+|+..+++|..+. .+.+|+||.||||+|||+|++|||.++++.|+.++++.+
T Consensus 144 ~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740|consen 144 GDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred hccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHh
Confidence 3456779999999999999999999999999999998764 667899999999999999999999999999999999999
Q ss_pred HhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcC--CCCeEEEEEeCC
Q 011553 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS--RGDVKVILATNR 339 (483)
Q Consensus 262 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~--~~~v~vI~ttn~ 339 (483)
.++|+|++++.++.+|..|+..+|+||||||||.++.+|.+..... ..+...++|.++++... .++|+||+|||+
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~---srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHES---SRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCccccc---chhhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 9999999999999999999999999999999999999984433222 23666777777766543 458999999999
Q ss_pred CCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccc
Q 011553 340 IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLAD 419 (483)
Q Consensus 340 ~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~ 419 (483)
|+.+|.+++| ||..++++|+|+.+.|..+|...+...+....
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~------------------------------------ 341 (428)
T KOG0740|consen 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLS------------------------------------ 341 (428)
T ss_pred chHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCcc------------------------------------
Confidence 9999999999 99999999999999999999998877632211
Q ss_pred cCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhc-------------CCCccHHHHHHHHHHHHhhccC
Q 011553 420 DVNLEEFVMTKDEFSGADIKAICTEAGLLALRER-------------RMKVTHTDFKKAKEKVMFKKKE 475 (483)
Q Consensus 420 ~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~-------------~~~it~ed~~~Al~~~~~~~~~ 475 (483)
+.+++.++..++|||+.||.++|.+|.+.-++.. ...++..||..|++.+......
T Consensus 342 ~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~ 410 (428)
T KOG0740|consen 342 DLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSVSL 410 (428)
T ss_pred HHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccccCc
Confidence 4567788888889999999999998887655432 2468889999999988765444
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-33 Score=289.94 Aligned_cols=237 Identities=45% Similarity=0.729 Sum_probs=212.1
Q ss_pred CCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhh
Q 011553 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 265 (483)
Q Consensus 186 ~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~ 265 (483)
++++ .+++|+..++..+++.+.+|+.++..|..+|+++|+++|+|||||||||+++++||++.++.++.++++++..++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5566 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhhcC-CeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCC
Q 011553 266 LGDGPKLVRELFRVADDLS-PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (483)
Q Consensus 266 ~g~~~~~i~~~f~~a~~~~-p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld 344 (483)
.|+++..++..|+.|..++ |++|||||+|.+++++..... -..++..+++..+++..+..+++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~----~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD----VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch----HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998744332 23456666777777777788999999999999999
Q ss_pred hhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHH
Q 011553 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLE 424 (483)
Q Consensus 345 ~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~ 424 (483)
++++| |||++.+++..|+..+|.+|++.++..+++.. ++++.
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~-------------------------------------~~~l~ 376 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLS-------------------------------------DVDLE 376 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcc-------------------------------------hhhHH
Confidence 99999 99999999999999999999999999999876 66777
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 011553 425 EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 425 ~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~ 470 (483)
.++..+.||.|+|+.++|++|...+.++ +.++|..|...+.
T Consensus 377 ~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~~~~A~~~i~ 417 (693)
T KOG0730|consen 377 DIAVSTHGYVGADLAALCREASLQATRR-----TLEIFQEALMGIR 417 (693)
T ss_pred HHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHHHHHHHhcCC
Confidence 8888888888888888888888888776 6667776665543
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-34 Score=287.96 Aligned_cols=254 Identities=37% Similarity=0.608 Sum_probs=216.8
Q ss_pred ccCCCCCccc--ccccHHHHHHH-HHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC-ceEEEec
Q 011553 183 EKAPLESYAD--IGGLDAQIQEI-KEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA-TFLRVVG 258 (483)
Q Consensus 183 ~~~~~~~~~d--i~Gl~~~~~~l-~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~-~~~~v~~ 258 (483)
...|...|.+ |+|++.-...| +.++...+-.|++.+++|++.-+|+|||||||||||++||.|.+-+++ .--.|++
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 3456666766 68999988876 667888899999999999999999999999999999999999999986 4566899
Q ss_pred hHHHhhhcCCchHHHHHHHHHHhhcC--------CeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCC
Q 011553 259 SELIQKYLGDGPKLVRELFRVADDLS--------PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD 330 (483)
Q Consensus 259 ~~l~~~~~g~~~~~i~~~f~~a~~~~--------p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~ 330 (483)
.+++++|+|+++..+|.+|..|.+.. -.||++||||+++.+|+... ++..--....++||..+|+...-.+
T Consensus 291 PeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~-g~TGVhD~VVNQLLsKmDGVeqLNN 369 (744)
T KOG0741|consen 291 PEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMA-GSTGVHDTVVNQLLSKMDGVEQLNN 369 (744)
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCC-CCCCccHHHHHHHHHhcccHHhhhc
Confidence 99999999999999999999886531 24999999999999885432 2232334677899999999999999
Q ss_pred eEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHH
Q 011553 331 VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQI 410 (483)
Q Consensus 331 v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~ 410 (483)
|+||+-||+.+.+|+||+|||||...+++.+||+..|.+|+++|+.+|.-..-
T Consensus 370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~--------------------------- 422 (744)
T KOG0741|consen 370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNK--------------------------- 422 (744)
T ss_pred EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCC---------------------------
Confidence 99999999999999999999999999999999999999999999988753321
Q ss_pred hhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhc---------------CCCccHHHHHHHHHHHH
Q 011553 411 HTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER---------------RMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 411 ~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~---------------~~~it~ed~~~Al~~~~ 470 (483)
+..++|++++|..|..|||++|..+++.|...|+.+. .-.|+.+||..|++.+.
T Consensus 423 ------l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVk 491 (744)
T KOG0741|consen 423 ------LSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVK 491 (744)
T ss_pred ------CCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcC
Confidence 1228899999999999999999999999998888653 24689999999999664
No 35
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-35 Score=304.96 Aligned_cols=372 Identities=20% Similarity=0.224 Sum_probs=294.2
Q ss_pred CCccCCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhcChhHHHHHHHHHHHHhhhCC-------Ccccccceec
Q 011553 49 PEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGS-------PMSVGNLEEL 121 (483)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~e~ 121 (483)
.++|..|++.+...|+...+..|..+.+.+++|+++..+..++.++.|+.+++++|++.++.. +..+..+.+.
T Consensus 179 ~~kQ~iLe~~~v~~Rlek~l~~l~~ei~~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~~~e~~~~~~k 258 (782)
T COG0466 179 EEKQEILETLDVKERLEKLLDLLEKEIDLLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGEDDDDKDEVEELREK 258 (782)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhHHHHHHHH
Confidence 346677999999999999999999999999999999999999999999999999999999854 1235677888
Q ss_pred ccCCeEEEecccCCceeEEeccccCccCCCCccEEEEeceeeeeeccccCcCcccccceecccCCCCCcccccccHHHHH
Q 011553 122 IDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQ 201 (483)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~~~ 201 (483)
+++..............+..++.+.+.+.+.+ +.+++++|+-.+||...... ..++..+..+.-.|++|++++++
T Consensus 259 ie~~~~p~evk~k~~~El~kL~~m~~~SaE~~----ViRnYlDwll~lPW~~~sk~-~~Dl~~a~~iLd~dHYGLekVKe 333 (782)
T COG0466 259 IEKLKLPKEAKEKAEKELKKLETMSPMSAEAT----VIRNYLDWLLDLPWGKRSKD-KLDLKKAEKILDKDHYGLEKVKE 333 (782)
T ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCCCCchHH----HHHHHHHHHHhCCCccccch-hhhHHHHHHHhcccccCchhHHH
Confidence 88877777766667777777888877776665 78899999999999876554 66788888889999999999999
Q ss_pred HHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh---------hhcCCchHH
Q 011553 202 EIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ---------KYLGDGPKL 272 (483)
Q Consensus 202 ~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~---------~~~g~~~~~ 272 (483)
+|.++++.......+- ..-+||+||||+|||+|+++||+.+++.|++++...+.+ +|+|..++.
T Consensus 334 RIlEyLAV~~l~~~~k-------GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGr 406 (782)
T COG0466 334 RILEYLAVQKLTKKLK-------GPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGK 406 (782)
T ss_pred HHHHHHHHHHHhccCC-------CcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChH
Confidence 9999998743332211 223899999999999999999999999999998765543 899999999
Q ss_pred HHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHh----------ccCCcCCCCeEEEEEeCCCCC
Q 011553 273 VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQ----------LDGFDSRGDVKVILATNRIES 342 (483)
Q Consensus 273 i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~----------l~~~~~~~~v~vI~ttn~~~~ 342 (483)
+-+-+..|...+| +++|||||+++ ++...++.++|+++|+- ++--..-++|+||+|+|..+.
T Consensus 407 IiQ~mkka~~~NP-v~LLDEIDKm~-------ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~t 478 (782)
T COG0466 407 IIQGMKKAGVKNP-VFLLDEIDKMG-------SSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDT 478 (782)
T ss_pred HHHHHHHhCCcCC-eEEeechhhcc-------CCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCcccc
Confidence 9999999999999 99999999995 44566788999999862 232334568999999999999
Q ss_pred CChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCC
Q 011553 343 LDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVN 422 (483)
Q Consensus 343 ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~ 422 (483)
+|.+|++ |+. +|+++.++.++..+|.+.|+-...+.. +|+..+++ .+.
T Consensus 479 IP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~-----------~gL~~~el------------------~i~ 526 (782)
T COG0466 479 IPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKE-----------HGLKKGEL------------------TIT 526 (782)
T ss_pred CChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHH-----------cCCCccce------------------eec
Confidence 9999999 996 999999999999999998875433222 33333332 222
Q ss_pred HHHHHhcCCCCC--------HHHHHHHHHHHHHHHHHhcC---CCccHHHHHHHHHHHHhh
Q 011553 423 LEEFVMTKDEFS--------GADIKAICTEAGLLALRERR---MKVTHTDFKKAKEKVMFK 472 (483)
Q Consensus 423 l~~la~~~~g~s--------~~di~~l~~~A~~~A~~~~~---~~it~ed~~~Al~~~~~~ 472 (483)
.+.+......|+ .++|..+|+.++..-+.... ..|+.+++.+.+....++
T Consensus 527 d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~~f~ 587 (782)
T COG0466 527 DEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVPVFR 587 (782)
T ss_pred HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCcccC
Confidence 222222222222 37888999999888765432 258888898888777654
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-33 Score=307.55 Aligned_cols=250 Identities=40% Similarity=0.676 Sum_probs=217.4
Q ss_pred cCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC-----ceEEEec
Q 011553 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA-----TFLRVVG 258 (483)
Q Consensus 184 ~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~-----~~~~v~~ 258 (483)
....++|++|+|++.++++|++.|..|+..|++|..+++.+|+|||++||||||||+.|+++|..+.. .|+.-.+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 45568999999999999999999999999999999999999999999999999999999999998753 6777788
Q ss_pred hHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeC
Q 011553 259 SELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (483)
Q Consensus 259 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn 338 (483)
++..++|+|+.++.++.+|+.|+..+|+|||+||||-|++.|+..+...+ ..+...+|..|+|+..++.|+||+|||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih---~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIH---ASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhh---hhHHHHHHHhccCCCCCCceEEEcccC
Confidence 99999999999999999999999999999999999999988854333222 344455666778888899999999999
Q ss_pred CCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhcccccc
Q 011553 339 RIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLA 418 (483)
Q Consensus 339 ~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~ 418 (483)
+++.++|+|+|||||++.++||.|+.+.|..|+.+|..+..-...
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~----------------------------------- 459 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPIS----------------------------------- 459 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCC-----------------------------------
Confidence 999999999999999999999999999999999999987662221
Q ss_pred ccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhc----------------CCCccHHHHHHHHHHHHhh
Q 011553 419 DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER----------------RMKVTHTDFKKAKEKVMFK 472 (483)
Q Consensus 419 ~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~----------------~~~it~ed~~~Al~~~~~~ 472 (483)
..-+..++..+.||.|+||+++|++|++.++++. ...|...||..|+.++...
T Consensus 460 -~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps 528 (1080)
T KOG0732|consen 460 -RELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPS 528 (1080)
T ss_pred -HHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCC
Confidence 2235678889999999999999999999999764 1347888898888887654
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=5.3e-32 Score=300.73 Aligned_cols=246 Identities=49% Similarity=0.834 Sum_probs=212.9
Q ss_pred CCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhh
Q 011553 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (483)
Q Consensus 185 ~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~ 264 (483)
.+.++|+||+|++.+++.|++++..|+.+|++|..+|+.+++++|||||||||||++++++|++++.+|+.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCC
Q 011553 265 YLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (483)
Q Consensus 265 ~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld 344 (483)
|.|.....++.+|..+....|+||||||||.++.++.......+. +.+.+++..++++.....++||++||+++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~---~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEK---RVVAQLLTLMDGLKGRGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHH---HHHHHHHHHhhccccCCCEEEEeecCChhhcC
Confidence 999999999999999999999999999999998776443332223 34455556666666677899999999999999
Q ss_pred hhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHH
Q 011553 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLE 424 (483)
Q Consensus 345 ~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~ 424 (483)
++++++|||++.+.++.|+.++|.+||+.++..+.+.. ++++.
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~-------------------------------------d~~l~ 371 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE-------------------------------------DVDLD 371 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc-------------------------------------ccCHH
Confidence 99999999999999999999999999999998887766 55677
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhc-------------------CCCccHHHHHHHHHHHH
Q 011553 425 EFVMTKDEFSGADIKAICTEAGLLALRER-------------------RMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 425 ~la~~~~g~s~~di~~l~~~A~~~A~~~~-------------------~~~it~ed~~~Al~~~~ 470 (483)
.++..+.||+++++..+|++|...++++. ...++.+||..|++.+.
T Consensus 372 ~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ 436 (733)
T TIGR01243 372 KLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVE 436 (733)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhcc
Confidence 77778888888888888888887776542 13577888888887664
No 38
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-31 Score=277.52 Aligned_cols=307 Identities=20% Similarity=0.221 Sum_probs=246.6
Q ss_pred CccCCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhcChhHHHHHHHHHHHHhhhCC-C-------cccccceec
Q 011553 50 EAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGS-P-------MSVGNLEEL 121 (483)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~e~ 121 (483)
+.|..|..++...|.++-+.-|++..+...++..+.+..+.+-++..+.+-+++|++.++.. + .....+.|.
T Consensus 267 elq~vL~~~di~~Rl~~al~llkke~e~~klq~ki~k~vE~k~~~~~r~ylL~eQlk~IKkeLg~e~Ddkd~~~~~~~er 346 (906)
T KOG2004|consen 267 ELQEVLEETDIEKRLEKALELLKKELELAKLQQKIGKEVEEKIKQDHREYLLREQLKAIKKELGIEKDDKDALVEKFRER 346 (906)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHhhCCCccchhhHHHHHHHH
Confidence 45666899999999999999999999999999999988888888888999999999999854 2 123455555
Q ss_pred ccCCeEEEecccCCceeEEeccccCccCCCCccEEEEeceeeeeeccccCcCcccccceecccCCCCCcccccccHHHHH
Q 011553 122 IDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQ 201 (483)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~~~ 201 (483)
+...........-.+..+..+.++++...+.+ +.++++.|+..+||...+.. .+++..+....-+|++|++++++
T Consensus 347 ~~~~~~P~~v~kv~~eEl~kL~~le~~~sEfn----vtrNYLdwlt~LPWgk~S~E-n~dl~~Ak~iLdeDHYgm~dVKe 421 (906)
T KOG2004|consen 347 IKSLKMPDHVLKVIDEELTKLKLLEPSSSEFN----VTRNYLDWLTSLPWGKSSTE-NLDLARAKEILDEDHYGMEDVKE 421 (906)
T ss_pred hhhccCcHHHHHHHHHHHHHHhccCccccchh----HHHHHHHHHHhCCCCCCChh-hhhHHHHHHhhcccccchHHHHH
Confidence 55532222222233444556677766655554 78999999999999876544 66777888888999999999999
Q ss_pred HHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh---------hhcCCchHH
Q 011553 202 EIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ---------KYLGDGPKL 272 (483)
Q Consensus 202 ~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~---------~~~g~~~~~ 272 (483)
+|.|+++..... |-...+-++|+||||+|||+++++||..+++.|++++...+.+ +|+|.+++.
T Consensus 422 RILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGk 494 (906)
T KOG2004|consen 422 RILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGK 494 (906)
T ss_pred HHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChH
Confidence 999999875333 2233455999999999999999999999999999998765543 899999999
Q ss_pred HHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHh----------ccCCcCCCCeEEEEEeCCCCC
Q 011553 273 VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQ----------LDGFDSRGDVKVILATNRIES 342 (483)
Q Consensus 273 i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~----------l~~~~~~~~v~vI~ttn~~~~ 342 (483)
+-+.++.....+| +++|||||+++ ++...++..+|+++|+- ++-...-++|+||||+|..+.
T Consensus 495 iIq~LK~v~t~NP-liLiDEvDKlG-------~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idt 566 (906)
T KOG2004|consen 495 IIQCLKKVKTENP-LILIDEVDKLG-------SGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDT 566 (906)
T ss_pred HHHHHHhhCCCCc-eEEeehhhhhC-------CCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEecccccc
Confidence 9999999999999 99999999997 34456678999999862 233334468999999999999
Q ss_pred CChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCC
Q 011553 343 LDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT 379 (483)
Q Consensus 343 ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~ 379 (483)
|+++|++ |+. +|+++.+..++...|.+.|+-...
T Consensus 567 IP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip~a 600 (906)
T KOG2004|consen 567 IPPPLLD--RME-VIELSGYVAEEKVKIAERYLIPQA 600 (906)
T ss_pred CChhhhh--hhh-eeeccCccHHHHHHHHHHhhhhHH
Confidence 9999999 996 999999999999999999876543
No 39
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=3.7e-30 Score=254.76 Aligned_cols=171 Identities=22% Similarity=0.239 Sum_probs=140.8
Q ss_pred hCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhh-----cCCeEEEEcCCc
Q 011553 220 IGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADD-----LSPSIVFIDEID 294 (483)
Q Consensus 220 ~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~-----~~p~Il~iDEiD 294 (483)
+++++|++++||||||||||++|+++|++++++|+.++++++.++|+|++++.++++|..|.. .+||||||||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 578999999999999999999999999999999999999999999999999999999999975 369999999999
Q ss_pred cccccccCCCCCChHHHHHHHHHHHHhccCC------------cCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCC
Q 011553 295 AVGTKRYDAHSGGEREIQRTMLELLNQLDGF------------DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLP 362 (483)
Q Consensus 295 ~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~------------~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P 362 (483)
++++.+...+ .....+....+||+.+|+. ....+|.||+|||+|+.||++|+|||||++.+ ..|
T Consensus 223 A~~g~r~~~~--~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lP 298 (413)
T PLN00020 223 AGAGRFGTTQ--YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAP 298 (413)
T ss_pred hcCCCCCCCC--cchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCC
Confidence 9998875322 2222233334666665542 34567999999999999999999999999754 589
Q ss_pred CHHHHHHHHHHHHcCCCCCcccchHHHHhhccc
Q 011553 363 DIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE 395 (483)
Q Consensus 363 ~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g 395 (483)
+.++|.+||+.+++...+. ..++..++..+.|
T Consensus 299 d~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~g 330 (413)
T PLN00020 299 TREDRIGVVHGIFRDDGVS-REDVVKLVDTFPG 330 (413)
T ss_pred CHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCC
Confidence 9999999999999987765 3455555544433
No 40
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.94 E-value=1.3e-27 Score=266.35 Aligned_cols=305 Identities=20% Similarity=0.220 Sum_probs=225.1
Q ss_pred CCccCCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhcChhHHHHHHHHHHHHhhhCC-Cc------ccccceec
Q 011553 49 PEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGS-PM------SVGNLEEL 121 (483)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~e~ 121 (483)
.++|..|.+.++..|+...+..|++..+.+.+++++..+.++..++.++.+.+|+|++.++.. .. .+..+.+.
T Consensus 176 ~eKQ~LLE~~d~~~RL~~l~~lL~~ele~l~l~~~I~~~v~~~~~~~qr~~~Lreqlk~i~~eLg~~~~~~~~~~~~~~k 255 (775)
T TIGR00763 176 DELQEVLETVNIEKRLKKALELLKKELELLKLQNKITKKVEEKMEKTQREYYLREQLKAIKKELGIEKDDKDELEKLKEK 255 (775)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHH
Confidence 345666888899999999999999999999999999999999999999999999999999854 21 12345555
Q ss_pred ccCCeEEEecccCCceeEEeccccCccCCCCccEEEEeceeeeeeccccCcCcccccceecccCCCCCcccccccHHHHH
Q 011553 122 IDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQ 201 (483)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~~~ 201 (483)
+++..............+..++.+.+.+.+.+ +.++++.++..++|...... ..++...+..--.+++|++++++
T Consensus 256 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~----~~~~yl~~~~~ip~~~~~~~-~~~~~~~~~~l~~~~~G~~~~k~ 330 (775)
T TIGR00763 256 LEELKLPEEVKKVIEKELTKLSLLEPSSSEFT----VTRNYLDWLTDLPWGKYSKE-NLDLKRAKEILDEDHYGLKKVKE 330 (775)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCCCCCchHH----HHHHHHHHHHCCCCcccccc-hhhHHHHHHHhhhhcCChHHHHH
Confidence 55554333333333344455566665555544 45677777778887653332 33344444445567999999999
Q ss_pred HHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH---------hhhcCCchHH
Q 011553 202 EIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI---------QKYLGDGPKL 272 (483)
Q Consensus 202 ~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~---------~~~~g~~~~~ 272 (483)
+|.+++..+.... .....++||+||||||||++|+++|+.++.+|++++++.+. ..|.|..++.
T Consensus 331 ~i~~~~~~~~~~~-------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~ 403 (775)
T TIGR00763 331 RILEYLAVQKLRG-------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGR 403 (775)
T ss_pred HHHHHHHHHHhhc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCch
Confidence 9999887642221 12234699999999999999999999999999999765432 2577888888
Q ss_pred HHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhc--cCCc--------CCCCeEEEEEeCCCCC
Q 011553 273 VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQL--DGFD--------SRGDVKVILATNRIES 342 (483)
Q Consensus 273 i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l--~~~~--------~~~~v~vI~ttn~~~~ 342 (483)
+.+.|..+....| ||||||||.+.... +.+...+|+++|+.. ..+. ..++++||+|||.++.
T Consensus 404 i~~~l~~~~~~~~-villDEidk~~~~~-------~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~ 475 (775)
T TIGR00763 404 IIQGLKKAKTKNP-LFLLDEIDKIGSSF-------RGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDT 475 (775)
T ss_pred HHHHHHHhCcCCC-EEEEechhhcCCcc-------CCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchh
Confidence 8888888877666 89999999996421 223456677777531 1111 2257999999999999
Q ss_pred CChhhcCCCccceEEEcCCCCHHHHHHHHHHHHc
Q 011553 343 LDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS 376 (483)
Q Consensus 343 ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~ 376 (483)
++++|++ ||. +|+|+.|+.+++..|++.++.
T Consensus 476 i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~ 506 (775)
T TIGR00763 476 IPRPLLD--RME-VIELSGYTEEEKLEIAKKYLI 506 (775)
T ss_pred CCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHH
Confidence 9999999 995 899999999999999998763
No 41
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.93 E-value=3e-26 Score=253.41 Aligned_cols=303 Identities=16% Similarity=0.177 Sum_probs=235.3
Q ss_pred CccCCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhcChhHHHHHHHHHHHHhhhCC-Cc------ccccceecc
Q 011553 50 EAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGS-PM------SVGNLEELI 122 (483)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~e~~ 122 (483)
++|..|.+.++..|+.+.+..|++..+.+.+++++..+.++..++.++++.+|+|++.++.. .. ....+.+.+
T Consensus 179 eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil~l~~~I~~~v~~~~~k~q~e~~lreq~~~i~~elg~~~~~~~~~~~~~~~~ 258 (784)
T PRK10787 179 DKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRKI 258 (784)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhhhcccccCCCcchhHHHHHHHHH
Confidence 35666999999999999999999999999999999999999999999999999999999854 21 223455666
Q ss_pred cCCeEEEecccCCceeEEeccccCccCCCCccEEEEeceeeeeeccccCcCcccccceecccCCCCCcccccccHHHHHH
Q 011553 123 DENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQE 202 (483)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~~~~ 202 (483)
++..............++.++.+++.+.+.+ +.++++.|+-.+||...... ..++..+..+.-.+++|+++++++
T Consensus 259 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~~----~~~~yl~~~~~~pw~~~~~~-~~~~~~~~~~l~~~~~g~~~vK~~ 333 (784)
T PRK10787 259 DAAKMPKEAKEKAEAELQKLKMMSPMSAEAT----VVRGYIDWMVQVPWNARSKV-KKDLRQAQEILDTDHYGLERVKDR 333 (784)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhCCCCCchHH----HHHHHHHHHHhCCCCCCCcc-cccHHHHHHHhhhhccCHHHHHHH
Confidence 6655544444445555666777777776666 77889999999999875443 456777777778889999999999
Q ss_pred HHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH---------hhhcCCchHHH
Q 011553 203 IKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI---------QKYLGDGPKLV 273 (483)
Q Consensus 203 l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~---------~~~~g~~~~~i 273 (483)
|.+++...... +-.....++|+||||||||++++++|..++.+|++++.+... ..|.|..++.+
T Consensus 334 i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~ 406 (784)
T PRK10787 334 ILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKL 406 (784)
T ss_pred HHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHH
Confidence 99988753211 111233599999999999999999999999999999766532 25778888877
Q ss_pred HHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhc----------cCCcCCCCeEEEEEeCCCCCC
Q 011553 274 RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQL----------DGFDSRGDVKVILATNRIESL 343 (483)
Q Consensus 274 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l----------~~~~~~~~v~vI~ttn~~~~l 343 (483)
.+.+..+....| ||+|||+|++.... ..++..+|+++++.- +-..+.++|+||+|+|.. .+
T Consensus 407 ~~~l~~~~~~~~-villDEidk~~~~~-------~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i 477 (784)
T PRK10787 407 IQKMAKVGVKNP-LFLLDEIDKMSSDM-------RGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NI 477 (784)
T ss_pred HHHHHhcCCCCC-EEEEEChhhccccc-------CCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CC
Confidence 777777766666 89999999995331 224578888888631 111234789999999987 59
Q ss_pred ChhhcCCCccceEEEcCCCCHHHHHHHHHHHHc
Q 011553 344 DPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS 376 (483)
Q Consensus 344 d~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~ 376 (483)
+++|++ ||. +|.|+.++.++..+|++.++.
T Consensus 478 ~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 478 PAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 999999 996 899999999999999998884
No 42
>CHL00181 cbbX CbbX; Provisional
Probab=99.88 E-value=1.8e-21 Score=192.80 Aligned_cols=178 Identities=24% Similarity=0.356 Sum_probs=139.8
Q ss_pred CcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCC---CceEEEcCCCCchHHHHHHHHHHcC-------CceEEEec
Q 011553 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPP---KGVILYGEPGTGKTLLAKAVANSTS-------ATFLRVVG 258 (483)
Q Consensus 189 ~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~---~gvLL~GppGtGKT~Laraia~~l~-------~~~~~v~~ 258 (483)
.+++|+|+++++++|.+.+.+ +..+.++...|...+ .+++|+||||||||++|+++|..+. .+|+.+++
T Consensus 21 l~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~ 99 (287)
T CHL00181 21 LDEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR 99 (287)
T ss_pred HHHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH
Confidence 345799999999999998876 445677777776554 3489999999999999999998752 36999999
Q ss_pred hHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeC
Q 011553 259 SELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (483)
Q Consensus 259 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn 338 (483)
+++.+.|.|.+...+..+|..+. ++||||||+|.++..+. ..+...+.+..|+.++.. ...+++||++++
T Consensus 100 ~~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~-----~~~~~~vI~ag~ 169 (287)
T CHL00181 100 DDLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMEN-----QRDDLVVIFAGY 169 (287)
T ss_pred HHHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhc-----CCCCEEEEEeCC
Confidence 99999999988877888888764 37999999999864321 122345666666666652 245788888886
Q ss_pred CCC-----CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCC
Q 011553 339 RIE-----SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT 379 (483)
Q Consensus 339 ~~~-----~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~ 379 (483)
... .++|+|.+ ||+.+|+|++|+.+++.+|+..++....
T Consensus 170 ~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~ 213 (287)
T CHL00181 170 KDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQ 213 (287)
T ss_pred cHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhc
Confidence 422 35699999 9999999999999999999999987654
No 43
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.7e-21 Score=190.87 Aligned_cols=258 Identities=22% Similarity=0.328 Sum_probs=175.1
Q ss_pred CCCCCcccccccHHHHHHHHHHH---hcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHH
Q 011553 185 APLESYADIGGLDAQIQEIKEAV---ELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (483)
Q Consensus 185 ~~~~~~~di~Gl~~~~~~l~e~i---~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l 261 (483)
.+...|++++--.....+|.... .....|.. +-++||||||||||||++|+-+|...|..|-.+.+.++
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~a--------pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDV 420 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATANTKKHQA--------PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDV 420 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhcccccccc--------hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCc
Confidence 33445777765555555554433 33222222 33569999999999999999999999999988888776
Q ss_pred HhhhcCCchHHHHHHHHHHhhcCCe-EEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCC
Q 011553 262 IQKYLGDGPKLVRELFRVADDLSPS-IVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (483)
Q Consensus 262 ~~~~~g~~~~~i~~~f~~a~~~~p~-Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~ 340 (483)
.-- -.+....++.+|+-+.....+ +|||||+|+++..|... .-+.....+|+.+|-.-. +...+++++.+||+|
T Consensus 421 APl-G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt--ymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrp 495 (630)
T KOG0742|consen 421 APL-GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTG--DQSRDIVLVLATNRP 495 (630)
T ss_pred ccc-chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh--hhcHHHHHHHHHHHHHhc--ccccceEEEeccCCc
Confidence 421 112346789999999886644 88999999998877432 223334456666664321 234579999999999
Q ss_pred CCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhcccccccc
Q 011553 341 ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADD 420 (483)
Q Consensus 341 ~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~ 420 (483)
..+|.++-+ ||+.+++||+|..++|..|+..|+.++-+..+. .+- ++-+. .++...+..+.+..+
T Consensus 496 gdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~---------~~~-~~~~~---~lfkk~sQ~i~l~~~ 560 (630)
T KOG0742|consen 496 GDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPAT---------SGK-PGKWS---HLFKKESQRIKLAGF 560 (630)
T ss_pred cchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCC---------CCC-Cchhh---HHHhhhhheeeeccc
Confidence 999999988 999999999999999999999999876544321 111 12222 222223333333332
Q ss_pred C---CHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 011553 421 V---NLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 421 ~---~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~ 470 (483)
+ -+.+.+..++||||++|..|+--.-..++-...-.++..-|++.+...+
T Consensus 561 ~t~~~~~EaAkkTeGfSGREiakLva~vQAavYgsedcvLd~~lf~e~v~ykv 613 (630)
T KOG0742|consen 561 DTGRKCSEAAKKTEGFSGREIAKLVASVQAAVYGSEDCVLDEALFDERVDYKV 613 (630)
T ss_pred hHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHH
Confidence 2 3668889999999999999876555555544555566666666655444
No 44
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.87 E-value=5.5e-21 Score=189.34 Aligned_cols=176 Identities=23% Similarity=0.354 Sum_probs=140.2
Q ss_pred ccccccHHHHHHHHHHHhcCCCChhhhhhhCCCC---CCceEEEcCCCCchHHHHHHHHHHcC-------CceEEEechH
Q 011553 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKP---PKGVILYGEPGTGKTLLAKAVANSTS-------ATFLRVVGSE 260 (483)
Q Consensus 191 ~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~---~~gvLL~GppGtGKT~Laraia~~l~-------~~~~~v~~~~ 260 (483)
++++|+++++++|.+.+.+ +..+..+...|+.. ..+++|+||||||||++|+++|..+. .+|+.+++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~ 100 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD 100 (284)
T ss_pred HhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH
Confidence 3689999999999998887 66777888888764 34799999999999999999998763 3799999999
Q ss_pred HHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCC
Q 011553 261 LIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (483)
Q Consensus 261 l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~ 340 (483)
+...+.|.+...+..+|..+.. +||||||++.+...+. ......+.+..|+++++. ...+++||++++..
T Consensus 101 l~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~-----~~~~~~vI~a~~~~ 170 (284)
T TIGR02880 101 LVGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMEN-----QRDDLVVILAGYKD 170 (284)
T ss_pred HhHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC--ccchHHHHHHHHHHHHhc-----CCCCEEEEEeCCcH
Confidence 9999999888888888887643 8999999999854321 122344566666666642 24678888887642
Q ss_pred --C---CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCC
Q 011553 341 --E---SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT 379 (483)
Q Consensus 341 --~---~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~ 379 (483)
+ .++|+|.+ ||...|.||+|+.+++..|++.++....
T Consensus 171 ~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~ 212 (284)
T TIGR02880 171 RMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQ 212 (284)
T ss_pred HHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhc
Confidence 2 25899999 9999999999999999999999988753
No 45
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=2.2e-20 Score=183.21 Aligned_cols=177 Identities=25% Similarity=0.352 Sum_probs=132.2
Q ss_pred CcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCC---CCceEEEcCCCCchHHHHHHHHHHc-------CCceEEEec
Q 011553 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKP---PKGVILYGEPGTGKTLLAKAVANST-------SATFLRVVG 258 (483)
Q Consensus 189 ~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~---~~gvLL~GppGtGKT~Laraia~~l-------~~~~~~v~~ 258 (483)
.+++++|++++|++|++.+.++... ......|... ..+++|+||||||||++|+++|+.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 3577899999999999988775333 2223345442 3458999999999999999999864 247899999
Q ss_pred hHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeC
Q 011553 259 SELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (483)
Q Consensus 259 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn 338 (483)
+++.+.|+|+....+..+|..+. ++||||||+|.|.... ...... ..+..++..++.. ..++++|++++
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~---~~~~~~---~~i~~Ll~~~e~~--~~~~~vila~~ 151 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG---EKDFGK---EAIDTLVKGMEDN--RNEFVLILAGY 151 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC---ccchHH---HHHHHHHHHHhcc--CCCEEEEecCC
Confidence 99999999999988899998775 4799999999985211 111122 3334445544432 45677777764
Q ss_pred CCC-----CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCC
Q 011553 339 RIE-----SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT 379 (483)
Q Consensus 339 ~~~-----~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~ 379 (483)
..+ .++|++.+ ||+..|.||.|+.+++..|++.++....
T Consensus 152 ~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~ 195 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKERE 195 (261)
T ss_pred cchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcC
Confidence 422 36889998 9998999999999999999998887644
No 46
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=4.6e-21 Score=167.23 Aligned_cols=130 Identities=45% Similarity=0.696 Sum_probs=108.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcC-CeEEEEcCCccccccccCCCCC
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLS-PSIVFIDEIDAVGTKRYDAHSG 306 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~-p~Il~iDEiD~l~~~r~~~~~~ 306 (483)
|||+||||||||++|+++|+.++.+|+.+++.++.+.+.+.....+..+|..+.... |+||||||+|.++......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~--- 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPS--- 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTS---
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccccc---
Confidence 689999999999999999999999999999999998888899999999999998887 9999999999998776222
Q ss_pred ChHHHHHHHHHHHHhccCCcCC-CCeEEEEEeCCCCCCChhhcCCCccceEEEcCC
Q 011553 307 GEREIQRTMLELLNQLDGFDSR-GDVKVILATNRIESLDPALLRPGRIDRKIEFPL 361 (483)
Q Consensus 307 ~~~~~~~~l~~lL~~l~~~~~~-~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~ 361 (483)
........+..++..++..... .+++||+|||.++.+++++++ +||+..|++|.
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 2333344444555555554433 579999999999999999997 79999999874
No 47
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-21 Score=188.42 Aligned_cols=261 Identities=20% Similarity=0.221 Sum_probs=186.9
Q ss_pred CcccccccHHHHHHHHHHHhcCCCChhhhhhhC-CCCCCceEEEcCCCCchHHHHHHHHHHcC---------CceEEEec
Q 011553 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIG-IKPPKGVILYGEPGTGKTLLAKAVANSTS---------ATFLRVVG 258 (483)
Q Consensus 189 ~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g-~~~~~gvLL~GppGtGKT~Laraia~~l~---------~~~~~v~~ 258 (483)
-|+.++=-...++++..|+...+...+..-... +...+-+||+||||||||+|++|+|+.+. ..++++++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 355666667788888888776544333221111 23456699999999999999999999875 36799999
Q ss_pred hHHHhhhcCCchHHHHHHHHHHhhcC-----CeEEEEcCCccccccccCC-CCCChHHHHHHHHHHHHhccCCcCCCCeE
Q 011553 259 SELIQKYLGDGPKLVRELFRVADDLS-----PSIVFIDEIDAVGTKRYDA-HSGGEREIQRTMLELLNQLDGFDSRGDVK 332 (483)
Q Consensus 259 ~~l~~~~~g~~~~~i~~~f~~a~~~~-----p~Il~iDEiD~l~~~r~~~-~~~~~~~~~~~l~~lL~~l~~~~~~~~v~ 332 (483)
..++++|.+++.+.+..+|....... -..++|||++.|+..|... ......+.-+..+.+|.++|.+....+|+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 99999999999999999998876532 2266799999999887443 33445678899999999999999999999
Q ss_pred EEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhcccc--chhhHHHHHHHHHH
Q 011553 333 VILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEF--SGADIKTRRRIFQI 410 (483)
Q Consensus 333 vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~--~~~~i~~~~r~~~~ 410 (483)
+++|+|-.+.+|.|+.+ |-|.+.++.+|+...+++|++..+..+--..-.-.. +.+.+. .....
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~---~~s~~~~~~i~~~--------- 365 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFH---QRSTGVKEFIKYQ--------- 365 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeee---ccchhhhHHhHhh---------
Confidence 99999999999999999 999999999999999999999776543211100000 001110 00011
Q ss_pred hhccccccccCCHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhcc
Q 011553 411 HTSRMTLADDVNLEEFVMT-KDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKK 474 (483)
Q Consensus 411 ~~~~~~~~~~~~l~~la~~-~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~~ 474 (483)
......+... +.|+|||-|+.+---|. |..-....|+.++|..|+-.++.+..
T Consensus 366 ---------~~~~~~~~~~~~~gLSGRtlrkLP~Lah--a~y~~~~~v~~~~fl~al~ea~~k~~ 419 (423)
T KOG0744|consen 366 ---------KALRNILIELSTVGLSGRTLRKLPLLAH--AEYFRTFTVDLSNFLLALLEAAKKLL 419 (423)
T ss_pred ---------HhHHHHHHHHhhcCCccchHhhhhHHHH--HhccCCCccChHHHHHHHHHHHHHHh
Confidence 1111222222 57999999988654433 22234568999999999988877654
No 48
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.1e-20 Score=188.62 Aligned_cols=184 Identities=26% Similarity=0.340 Sum_probs=151.5
Q ss_pred CCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhc
Q 011553 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYL 266 (483)
Q Consensus 187 ~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~ 266 (483)
+.+|+.++=-.+.+++|.+-+...+...+.|.+.|....+|.|||||||||||+++.|+|+.++...+.+..++..
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~---- 272 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK---- 272 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc----
Confidence 3788999999999999999999999999999999999999999999999999999999999999998888776642
Q ss_pred CCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCC---CCh-HHHHHHHHHHHHhccCCcCCC--CeEEEEEeCCC
Q 011553 267 GDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS---GGE-REIQRTMLELLNQLDGFDSRG--DVKVILATNRI 340 (483)
Q Consensus 267 g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~---~~~-~~~~~~l~~lL~~l~~~~~~~--~v~vI~ttn~~ 340 (483)
.... ++.++..+. ..+||+|+|||.-+.-+..... +.. ....-+|..||+.+||+-+.. .-+||+|||.+
T Consensus 273 -~n~d-Lr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 273 -LDSD-LRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred -CcHH-HHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 2233 666665443 3479999999987653322111 111 123357788999999987755 67899999999
Q ss_pred CCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCC
Q 011553 341 ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM 378 (483)
Q Consensus 341 ~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~ 378 (483)
+.|||||+||||+|.+|++..-+..+-..++..++..-
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~ 386 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIE 386 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999998653
No 49
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.7e-19 Score=190.08 Aligned_cols=256 Identities=23% Similarity=0.342 Sum_probs=179.6
Q ss_pred cccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHH
Q 011553 194 GGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLV 273 (483)
Q Consensus 194 ~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i 273 (483)
-+.+..+..+...+..+ ..+. ..+......+||+|+||||||++++++|.++|.+++.++|.++.....+..+..+
T Consensus 404 ~~~~~~~~~l~~vl~p~-~~~s---~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl 479 (953)
T KOG0736|consen 404 PGLEAKVLELVAVLSPQ-KQPS---GALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKL 479 (953)
T ss_pred ccchHHHHHHHHHhCcc-cCcc---hhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHH
Confidence 45555555454444332 2221 1123344569999999999999999999999999999999999998888899999
Q ss_pred HHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCc-CCCCeEEEEEeCCCCCCChhhcCCCc
Q 011553 274 RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD-SRGDVKVILATNRIESLDPALLRPGR 352 (483)
Q Consensus 274 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~-~~~~v~vI~ttn~~~~ld~allr~gR 352 (483)
..+|..|+...|+|||+-++|-++..+ ..+........+..++. .+.+. +...++||++|++.+.+++.+++ -
T Consensus 480 ~~~f~~a~~~~pavifl~~~dvl~id~---dgged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~ 553 (953)
T KOG0736|consen 480 QAIFSRARRCSPAVLFLRNLDVLGIDQ---DGGEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--L 553 (953)
T ss_pred HHHHHHHhhcCceEEEEeccceeeecC---CCchhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--h
Confidence 999999999999999999999997433 22334455555555554 33332 56789999999999999999988 8
Q ss_pred cceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCC
Q 011553 353 IDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE 432 (483)
Q Consensus 353 ~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g 432 (483)
|...|.++.|+.++|.+||+.++....+..++.+..++..+.||+.+++.++........ ...+.. .+
T Consensus 554 f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~----------~~~i~~--~~ 621 (953)
T KOG0736|consen 554 FLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAA----------KTRIKN--KG 621 (953)
T ss_pred hhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHH----------HHHHHh--hc
Confidence 888999999999999999999999999988776777777777777666655432221000 000000 00
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhccCC
Q 011553 433 FSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEG 476 (483)
Q Consensus 433 ~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~~~~ 476 (483)
+.|. .++-...++.-....++++||.+|+.++...++..
T Consensus 622 l~g~-----~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~a 660 (953)
T KOG0736|consen 622 LAGG-----LQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDA 660 (953)
T ss_pred cccc-----chhccccccccccceecHHHHHHHHHHHHHhhhhh
Confidence 0000 00000011111236799999999999999877663
No 50
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.81 E-value=8.4e-19 Score=163.91 Aligned_cols=171 Identities=20% Similarity=0.261 Sum_probs=115.0
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 183 ~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
+..++.+|+|++|++.++..++-++...... -....++|||||||+|||+||+.||++++.+|..++++.+.
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 4557789999999999999987776542111 12345799999999999999999999999999988875431
Q ss_pred hhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc-----CCcC--------CC
Q 011553 263 QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD-----GFDS--------RG 329 (483)
Q Consensus 263 ~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~-----~~~~--------~~ 329 (483)
....+..++.... ...|||||||+++ +...+..|+..++... +-.. ..
T Consensus 88 ------k~~dl~~il~~l~--~~~ILFIDEIHRl-----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 88 ------KAGDLAAILTNLK--EGDILFIDEIHRL-----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp ------SCHHHHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred ------hHHHHHHHHHhcC--CCcEEEEechhhc-----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1233333443332 3469999999999 7778888888887321 1111 13
Q ss_pred CeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCc
Q 011553 330 DVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD 382 (483)
Q Consensus 330 ~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~ 382 (483)
++.+|+||.+...+.++|++ ||..+..+..++.++...|+......+.+.-
T Consensus 149 ~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i 199 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEI 199 (233)
T ss_dssp --EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE
T ss_pred CceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCc
Confidence 58999999999999999999 9998889999999999999998777666543
No 51
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1e-18 Score=182.74 Aligned_cols=231 Identities=22% Similarity=0.275 Sum_probs=171.8
Q ss_pred ccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC----CceEEEechHHHhhhc
Q 011553 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS----ATFLRVVGSELIQKYL 266 (483)
Q Consensus 191 ~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~----~~~~~v~~~~l~~~~~ 266 (483)
.|++-+...+++..+....| +-.+.++||+||+|||||.|+++++++.. +++..++|+.+..+..
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 45556666666665544443 23456799999999999999999999875 4778889999988777
Q ss_pred CCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhc-cCCc-CCCCeEEEEEeCCCCCCC
Q 011553 267 GDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQL-DGFD-SRGDVKVILATNRIESLD 344 (483)
Q Consensus 267 g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l-~~~~-~~~~v~vI~ttn~~~~ld 344 (483)
....+.++.+|..|.+++|+||++|++|.|++... ..++........+..+++++ ..+. .+..+.||++.+..+.++
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~-~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASS-NENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCc-ccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 66778899999999999999999999999987321 11222222333344444322 1222 234579999999999999
Q ss_pred hhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHH
Q 011553 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLE 424 (483)
Q Consensus 345 ~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~ 424 (483)
|-|.+|++|+.++.+|.|+..+|.+|+...+++...... ..+++
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~------------------------------------~~dLd 599 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDIT------------------------------------MDDLD 599 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhh------------------------------------hHHHH
Confidence 999999999999999999999999999998877552221 22344
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhc----CCCccHHHHHHHHHHH
Q 011553 425 EFVMTKDEFSGADIKAICTEAGLLALRER----RMKVTHTDFKKAKEKV 469 (483)
Q Consensus 425 ~la~~~~g~s~~di~~l~~~A~~~A~~~~----~~~it~ed~~~Al~~~ 469 (483)
.++..|+||...|+.-++.+|...|..+. ...+|.++|.++++.-
T Consensus 600 ~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F 648 (952)
T KOG0735|consen 600 FLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDF 648 (952)
T ss_pred HHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhc
Confidence 47788888888888888888888887432 2368888888887754
No 52
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.80 E-value=5.6e-18 Score=171.66 Aligned_cols=222 Identities=18% Similarity=0.175 Sum_probs=152.4
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHH
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l 261 (483)
..+..+.+|++++|.++.++.+..++..... .-.++.++|||||||||||++|+++|++++..+..++++.+
T Consensus 16 ~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~ 87 (328)
T PRK00080 16 ERSLRPKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPAL 87 (328)
T ss_pred hhhcCcCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccc
Confidence 3456678999999999999999888754211 12346679999999999999999999999998877765533
Q ss_pred HhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc------C-Cc------CC
Q 011553 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD------G-FD------SR 328 (483)
Q Consensus 262 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~------~-~~------~~ 328 (483)
. ....+..++... ..++||||||||.+. ...+..+..+++... . .. ..
T Consensus 88 ~------~~~~l~~~l~~l--~~~~vl~IDEi~~l~-----------~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 88 E------KPGDLAAILTNL--EEGDVLFIDEIHRLS-----------PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred c------ChHHHHHHHHhc--ccCCEEEEecHhhcc-----------hHHHHHHHHHHHhcceeeeeccCccccceeecC
Confidence 1 122334444432 346799999999983 223444555554321 0 00 11
Q ss_pred CCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHH
Q 011553 329 GDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIF 408 (483)
Q Consensus 329 ~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~ 408 (483)
.++.+|++||++..++++|++ ||...+.|+.|+.+++.+|++.......+.-+
T Consensus 149 ~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~------------------------- 201 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEID------------------------- 201 (328)
T ss_pred CCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC-------------------------
Confidence 347899999999999999988 99889999999999999999988766544321
Q ss_pred HHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 011553 409 QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKV 469 (483)
Q Consensus 409 ~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~ 469 (483)
+..+..++..+.|.. +.+..++..+...|..++...|+.+++..++..+
T Consensus 202 -----------~~~~~~ia~~~~G~p-R~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 202 -----------EEGALEIARRSRGTP-RIANRLLRRVRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred -----------HHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 122445555555533 5566666666666555445567777777776543
No 53
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.80 E-value=5.2e-18 Score=170.10 Aligned_cols=214 Identities=16% Similarity=0.173 Sum_probs=144.9
Q ss_pred CcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCC
Q 011553 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGD 268 (483)
Q Consensus 189 ~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~ 268 (483)
+|++++|+++++++|..++...... ...+.+++|+||||||||+||+++|++++..+..+.++.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 6899999999999999988642111 133567999999999999999999999998877665543211
Q ss_pred chHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccC-------C------cCCCCeEEEE
Q 011553 269 GPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG-------F------DSRGDVKVIL 335 (483)
Q Consensus 269 ~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~-------~------~~~~~v~vI~ 335 (483)
...+...+... ..+.+|||||++.+. ...+..+..+++.... . ....++.+|+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~-----------~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLS-----------PAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhC-----------HHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 12222333222 245799999999983 2344555555543220 0 0123488999
Q ss_pred EeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccc
Q 011553 336 ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRM 415 (483)
Q Consensus 336 ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~ 415 (483)
+||++..+++++++ ||...+.|++|+.++..++++.........-+
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~-------------------------------- 180 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIE-------------------------------- 180 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC--------------------------------
Confidence 99999999999998 99888999999999999999977764433211
Q ss_pred cccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 011553 416 TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEK 468 (483)
Q Consensus 416 ~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~ 468 (483)
+..++.++..+.|.. +.+..+|..+...|...+...|+.+++..++..
T Consensus 181 ----~~al~~ia~~~~G~p-R~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 181 ----PEAALEIARRSRGTP-RIANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred ----HHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 122344555555543 555666666655554444455777777777665
No 54
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.78 E-value=2.2e-18 Score=184.50 Aligned_cols=224 Identities=25% Similarity=0.297 Sum_probs=158.5
Q ss_pred eecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc----------
Q 011553 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---------- 249 (483)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l---------- 249 (483)
.+.+++++.+|++++|.+..++.++..+.. ..+.++||+||||||||++|+++++.+
T Consensus 54 ~~~~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~ 120 (531)
T TIGR02902 54 PLSEKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKE 120 (531)
T ss_pred hHHHhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCC
Confidence 356678889999999999999999876533 235679999999999999999998742
Q ss_pred CCceEEEechHH-------HhhhcCCchHH----------------HHHHHHHHhhcCCeEEEEcCCccccccccCCCCC
Q 011553 250 SATFLRVVGSEL-------IQKYLGDGPKL----------------VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSG 306 (483)
Q Consensus 250 ~~~~~~v~~~~l-------~~~~~g~~~~~----------------i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~ 306 (483)
+.+|+.++|+.. .....+....- ...++.. ...++||||||+.|
T Consensus 121 ~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~---a~gG~L~IdEI~~L---------- 187 (531)
T TIGR02902 121 GAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTR---AHGGVLFIDEIGEL---------- 187 (531)
T ss_pred CCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhc---cCCcEEEEechhhC----------
Confidence 368999998642 11111110000 0011222 23479999999999
Q ss_pred ChHHHHHHHHHHHHhccCC-----------------------cCCCCeEEEEEe-CCCCCCChhhcCCCccceEEEcCCC
Q 011553 307 GEREIQRTMLELLNQLDGF-----------------------DSRGDVKVILAT-NRIESLDPALLRPGRIDRKIEFPLP 362 (483)
Q Consensus 307 ~~~~~~~~l~~lL~~l~~~-----------------------~~~~~v~vI~tt-n~~~~ld~allr~gR~~~~i~~~~P 362 (483)
+...|..|+.+|+.-..+ .-..++++|++| +.++.+++++++ |+. .+.|+++
T Consensus 188 -~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL 263 (531)
T TIGR02902 188 -HPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPL 263 (531)
T ss_pred -CHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCC
Confidence 667888888888642100 012245666655 679999999998 985 8899999
Q ss_pred CHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHH
Q 011553 363 DIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAIC 442 (483)
Q Consensus 363 ~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~ 442 (483)
+.+++..|++..++...+.-+ +..++.++..+ .+++++.++|
T Consensus 264 ~~eei~~Il~~~a~k~~i~is------------------------------------~~al~~I~~y~--~n~Rel~nll 305 (531)
T TIGR02902 264 LDEEIKEIAKNAAEKIGINLE------------------------------------KHALELIVKYA--SNGREAVNIV 305 (531)
T ss_pred CHHHHHHHHHHHHHHcCCCcC------------------------------------HHHHHHHHHhh--hhHHHHHHHH
Confidence 999999999988876543221 11233333332 3689999999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 011553 443 TEAGLLALRERRMKVTHTDFKKAKEKVMF 471 (483)
Q Consensus 443 ~~A~~~A~~~~~~~it~ed~~~Al~~~~~ 471 (483)
+.|...|..+++..|+.+|+..++..-.+
T Consensus 306 ~~Aa~~A~~~~~~~It~~dI~~vl~~~~~ 334 (531)
T TIGR02902 306 QLAAGIALGEGRKRILAEDIEWVAENGNY 334 (531)
T ss_pred HHHHHHHhhCCCcEEcHHHHHHHhCCccc
Confidence 99999998888889999999999875443
No 55
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.78 E-value=2.6e-18 Score=190.95 Aligned_cols=169 Identities=25% Similarity=0.342 Sum_probs=137.6
Q ss_pred cCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc----------CCce
Q 011553 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATF 253 (483)
Q Consensus 184 ~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l----------~~~~ 253 (483)
.+.+-.+++++|.++.+.++.+.+.. ....+++|+||||||||++|+++|..+ +..+
T Consensus 175 ~~r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~ 241 (731)
T TIGR02639 175 KAKNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKI 241 (731)
T ss_pred HHhcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeE
Confidence 44566888999999999998877754 235679999999999999999999987 6789
Q ss_pred EEEechHHH--hhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCe
Q 011553 254 LRVVGSELI--QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDV 331 (483)
Q Consensus 254 ~~v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v 331 (483)
+.++++.+. .+|.|+.+..++.+|+.+....|+||||||+|.+..... .+++..+.+..|...|. ++.+
T Consensus 242 ~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~--~~~~~~~~~~~L~~~l~-------~g~i 312 (731)
T TIGR02639 242 YSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGA--TSGGSMDASNLLKPALS-------SGKL 312 (731)
T ss_pred EEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCC--CCCccHHHHHHHHHHHh-------CCCe
Confidence 999998887 478999999999999999887889999999999976542 12333455565555543 5689
Q ss_pred EEEEEeCCC-----CCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcC
Q 011553 332 KVILATNRI-----ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR 377 (483)
Q Consensus 332 ~vI~ttn~~-----~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~ 377 (483)
.+|++||.. ...|++|.| ||. .|+|+.|+.+++..|++.....
T Consensus 313 ~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 360 (731)
T TIGR02639 313 RCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEK 360 (731)
T ss_pred EEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHH
Confidence 999999863 357999999 997 8999999999999999966554
No 56
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=4.6e-17 Score=155.09 Aligned_cols=168 Identities=18% Similarity=0.282 Sum_probs=128.0
Q ss_pred CCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhh
Q 011553 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 265 (483)
Q Consensus 186 ~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~ 265 (483)
++.+|++.+|+++++.+|.-++....... ...-++|||||||.||||||+.||++++.++-..++.-+.
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le--- 89 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE--- 89 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc---
Confidence 46789999999999999999887743332 3455799999999999999999999999998777766542
Q ss_pred cCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhc--c-----CCcC------CCCeE
Q 011553 266 LGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQL--D-----GFDS------RGDVK 332 (483)
Q Consensus 266 ~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l--~-----~~~~------~~~v~ 332 (483)
.+..+..++..... .+|+|||||+++ ++.+...|.-.++.. | +... -.++.
T Consensus 90 ---K~gDlaaiLt~Le~--~DVLFIDEIHrl-----------~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 90 ---KPGDLAAILTNLEE--GDVLFIDEIHRL-----------SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ---ChhhHHHHHhcCCc--CCeEEEehhhhc-----------ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 23334444443322 369999999999 334455555555421 1 1111 13689
Q ss_pred EEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCc
Q 011553 333 VILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD 382 (483)
Q Consensus 333 vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~ 382 (483)
+|+||.+.-.+..+|++ ||..+..+..++.++...|+......+.+.-
T Consensus 154 LIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i 201 (332)
T COG2255 154 LIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEI 201 (332)
T ss_pred EeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999 9999999999999999999998877666654
No 57
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.6e-17 Score=174.80 Aligned_cols=222 Identities=48% Similarity=0.732 Sum_probs=191.7
Q ss_pred cCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEE
Q 011553 209 LPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIV 288 (483)
Q Consensus 209 ~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il 288 (483)
.|+.+++.+..+++.++++++++||||||||++++++|+. +..++.+++.+...++.|.+....+.+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 4678899999999999999999999999999999999999 776788899999999999999999999999999999999
Q ss_pred EEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHH
Q 011553 289 FIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR 368 (483)
Q Consensus 289 ~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~ 368 (483)
++||+|.+...+...... ...+...+++..++++. ...+++++.+|++..+++++++|+||+..+.+..|+...+.
T Consensus 81 ~~d~~~~~~~~~~~~~~~---~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T COG0464 81 FIDEIDALAPKRSSDQGE---VERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRL 156 (494)
T ss_pred eechhhhcccCccccccc---hhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHH
Confidence 999999999887552222 23344555555556655 44488899999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 011553 369 RIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLL 448 (483)
Q Consensus 369 ~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~ 448 (483)
+|+..+...+.... ..+...++..+.|++++++..+|.++...
T Consensus 157 ei~~~~~~~~~~~~-------------------------------------~~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 199 (494)
T COG0464 157 EILQIHTRLMFLGP-------------------------------------PGTGKTLAARTVGKSGADLGALAKEAALR 199 (494)
T ss_pred HHHHHHHhcCCCcc-------------------------------------cccHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 99999998888766 56788888899999999999999999988
Q ss_pred HHHhc------CCCccHHHHHHHHHHHHhh
Q 011553 449 ALRER------RMKVTHTDFKKAKEKVMFK 472 (483)
Q Consensus 449 A~~~~------~~~it~ed~~~Al~~~~~~ 472 (483)
+.++. ...++.+|+.++++++...
T Consensus 200 ~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 200 ELRRAIDLVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred HHHhhhccCcccccccHHHHHHHHHhcCcc
Confidence 88774 4568999999999987653
No 58
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.75 E-value=3.9e-17 Score=162.45 Aligned_cols=151 Identities=29% Similarity=0.430 Sum_probs=121.4
Q ss_pred cCCCCCcccccccHHHHH---HHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechH
Q 011553 184 KAPLESYADIGGLDAQIQ---EIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSE 260 (483)
Q Consensus 184 ~~~~~~~~di~Gl~~~~~---~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~ 260 (483)
..++.++++++|++..+- -|...+.. ....+++||||||||||+||+.||..++..|..+++..
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~ 83 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT 83 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence 446789999999988763 35555543 34457999999999999999999999999999998743
Q ss_pred HHhhhcCCchHHHHHHHHHHhhcC----CeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEE
Q 011553 261 LIQKYLGDGPKLVRELFRVADDLS----PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILA 336 (483)
Q Consensus 261 l~~~~~g~~~~~i~~~f~~a~~~~----p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~t 336 (483)
.+.+.++.+++.|+... ..|||||||+++ +..-|..|+-.++ .+.|++|+|
T Consensus 84 -------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----------nK~QQD~lLp~vE-------~G~iilIGA 138 (436)
T COG2256 84 -------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----------NKAQQDALLPHVE-------NGTIILIGA 138 (436)
T ss_pred -------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----------Chhhhhhhhhhhc-------CCeEEEEec
Confidence 34567888999885542 369999999999 5556777777765 567899998
Q ss_pred e--CCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHH
Q 011553 337 T--NRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHT 375 (483)
Q Consensus 337 t--n~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~ 375 (483)
| |....++++|++ |.. ++++.+.+.++...+++..+
T Consensus 139 TTENPsF~ln~ALlS--R~~-vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 139 TTENPSFELNPALLS--RAR-VFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred cCCCCCeeecHHHhh--hhh-eeeeecCCHHHHHHHHHHHH
Confidence 8 666789999999 884 89999999999999998743
No 59
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.74 E-value=3e-17 Score=180.92 Aligned_cols=178 Identities=27% Similarity=0.373 Sum_probs=139.2
Q ss_pred CCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc----------CCceE
Q 011553 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATFL 254 (483)
Q Consensus 185 ~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l----------~~~~~ 254 (483)
+..-.++.++|.++.+.++.+.+.. ....++||+||||||||++|+++|... +..++
T Consensus 180 a~~g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~ 246 (758)
T PRK11034 180 ARVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_pred HHcCCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEE
Confidence 4455677899999999999987765 234568999999999999999999864 45666
Q ss_pred EEechHHH--hhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeE
Q 011553 255 RVVGSELI--QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVK 332 (483)
Q Consensus 255 ~v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~ 332 (483)
.++.+.+. ..|.|+.+..++.+|..+....++||||||||.|+..+.. +++..+..+.|..++. ++.+.
T Consensus 247 ~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~--~~g~~d~~nlLkp~L~-------~g~i~ 317 (758)
T PRK11034 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA--SGGQVDAANLIKPLLS-------SGKIR 317 (758)
T ss_pred eccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC--CCcHHHHHHHHHHHHh-------CCCeE
Confidence 76666665 4678888999999999888888899999999999765421 2334555555665554 57899
Q ss_pred EEEEeCCCC-----CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchH
Q 011553 333 VILATNRIE-----SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLE 387 (483)
Q Consensus 333 vI~ttn~~~-----~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~ 387 (483)
+|++|+.++ ..|++|.| ||. .|.++.|+.+++..|++.+...+....++.+.
T Consensus 318 vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~ 374 (758)
T PRK11034 318 VIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYT 374 (758)
T ss_pred EEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcC
Confidence 999998754 57999999 996 89999999999999999877666555444443
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=7.9e-17 Score=167.31 Aligned_cols=188 Identities=17% Similarity=0.211 Sum_probs=133.7
Q ss_pred ecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc--------
Q 011553 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (483)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~-------- 252 (483)
+.+++++.+|+|++|++.++..|..++... ..+..+||+||+|||||++|+++|+.+++.
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pC 75 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPC 75 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcccc
Confidence 456788999999999999999999988752 335569999999999999999999988752
Q ss_pred ----------------eEEEechHHHhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChHHHH
Q 011553 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (483)
Q Consensus 253 ----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 312 (483)
|+.++++. ..+...++.+.+.+.. ....|+||||+|.| +.+.+
T Consensus 76 g~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-----------s~~A~ 138 (484)
T PRK14956 76 NECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-----------TDQSF 138 (484)
T ss_pred CCCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-----------CHHHH
Confidence 22222211 1122344555444332 23469999999999 44556
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCc-ccchHHHHh
Q 011553 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD-DVNLEEFVM 391 (483)
Q Consensus 313 ~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~-~~~l~~la~ 391 (483)
..|+..+++ +...++||++|+.++.+++++++ |+. .+.|.+++.++....++..+....+.- +..+..++.
T Consensus 139 NALLKtLEE-----Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~ 210 (484)
T PRK14956 139 NALLKTLEE-----PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAK 210 (484)
T ss_pred HHHHHHhhc-----CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666555542 35689999999999999999999 995 899999999998888888877655432 223444554
Q ss_pred hccccchhhHHHHHHHHH
Q 011553 392 TKDEFSGADIKTRRRIFQ 409 (483)
Q Consensus 392 ~t~g~~~~~i~~~~r~~~ 409 (483)
.+ .++++.+...+.
T Consensus 211 ~S----~Gd~RdAL~lLe 224 (484)
T PRK14956 211 KG----DGSVRDMLSFME 224 (484)
T ss_pred Hc----CChHHHHHHHHH
Confidence 44 445555555553
No 61
>PRK04195 replication factor C large subunit; Provisional
Probab=99.73 E-value=1.7e-16 Score=168.75 Aligned_cols=196 Identities=25% Similarity=0.353 Sum_probs=141.0
Q ss_pred ceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEec
Q 011553 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (483)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~ 258 (483)
.+|++++.+.++++|+|.+.+++.|..++..... | .+++++||+||||||||++|+++|++++..++.+++
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielna 72 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNA 72 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcc
Confidence 4688999999999999999999999999875321 1 236789999999999999999999999999999998
Q ss_pred hHHHhhhcCCchHHHHHHHHHHhh------cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeE
Q 011553 259 SELIQKYLGDGPKLVRELFRVADD------LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVK 332 (483)
Q Consensus 259 ~~l~~~~~g~~~~~i~~~f~~a~~------~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~ 332 (483)
++... ...+..+...+.. ..+.||+|||+|.+... .+......++.++.. .+..
T Consensus 73 sd~r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~-------~d~~~~~aL~~~l~~-------~~~~ 132 (482)
T PRK04195 73 SDQRT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN-------EDRGGARAILELIKK-------AKQP 132 (482)
T ss_pred ccccc------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccc-------cchhHHHHHHHHHHc-------CCCC
Confidence 76432 1223333322221 24679999999998432 122344556666542 3455
Q ss_pred EEEEeCCCCCCCh-hhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCc-ccchHHHHhhccccchhhHHHHHHHHHH
Q 011553 333 VILATNRIESLDP-ALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD-DVNLEEFVMTKDEFSGADIKTRRRIFQI 410 (483)
Q Consensus 333 vI~ttn~~~~ld~-allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~t~g~~~~~i~~~~r~~~~ 410 (483)
+|++||.+..+.+ .+++ |+ ..|.|++|+..+...+++..+....+.- +..+..++.. +.+|++.+...++.
T Consensus 133 iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~----s~GDlR~ain~Lq~ 205 (482)
T PRK04195 133 IILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAER----SGGDLRSAINDLQA 205 (482)
T ss_pred EEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----cCCCHHHHHHHHHH
Confidence 8888899888877 6665 55 5899999999999999998876655432 2234555544 35677777666665
No 62
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=5.8e-17 Score=172.19 Aligned_cols=164 Identities=18% Similarity=0.235 Sum_probs=122.8
Q ss_pred ecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC---------
Q 011553 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA--------- 251 (483)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~--------- 251 (483)
..+++++.+|+||+|++.+++.|..++... +.++.+||+||+|||||++|+.+|+.+++
T Consensus 6 LarKYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~ 73 (700)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI 73 (700)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC
Confidence 356788999999999999999999998752 44567899999999999999999998875
Q ss_pred --------------------ceEEEechHHHhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCC
Q 011553 252 --------------------TFLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGG 307 (483)
Q Consensus 252 --------------------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~ 307 (483)
.++.++.+. ..+...++++.+.+.. ....|+||||+|.|
T Consensus 74 ~~~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L----------- 136 (700)
T PRK12323 74 TAQPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML----------- 136 (700)
T ss_pred CCCCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc-----------
Confidence 122222210 1123445666655433 23469999999999
Q ss_pred hHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCC
Q 011553 308 EREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA 381 (483)
Q Consensus 308 ~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~ 381 (483)
+...++.|+..|++ +..+++||++||.++.|.+.+++ |+. .+.|..++.++....+...+....+.
T Consensus 137 s~~AaNALLKTLEE-----PP~~v~FILaTtep~kLlpTIrS--RCq-~f~f~~ls~eei~~~L~~Il~~Egi~ 202 (700)
T PRK12323 137 TNHAFNAMLKTLEE-----PPEHVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPPGHIVSHLDAILGEEGIA 202 (700)
T ss_pred CHHHHHHHHHhhcc-----CCCCceEEEEeCChHhhhhHHHH--HHH-hcccCCCChHHHHHHHHHHHHHcCCC
Confidence 33445555555543 35689999999999999999999 994 99999999999999888776654443
No 63
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=1.4e-16 Score=171.26 Aligned_cols=178 Identities=17% Similarity=0.204 Sum_probs=130.3
Q ss_pred ecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc--------
Q 011553 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (483)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~-------- 252 (483)
..+++++.+|++|+|++.+++.|..++.. -..++.+||+||+|||||++++++|+.+++.
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PC 73 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPC 73 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCC
Confidence 35678999999999999999999998875 1345668999999999999999999988652
Q ss_pred ----------------eEEEechHHHhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChHHHH
Q 011553 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (483)
Q Consensus 253 ----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 312 (483)
+++++.+. ..+...++.+++.+.. ....|+||||+|.| +...+
T Consensus 74 G~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-----------T~~A~ 136 (830)
T PRK07003 74 GVCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML-----------TNHAF 136 (830)
T ss_pred cccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC-----------CHHHH
Confidence 22222211 1123445666665543 23469999999999 34455
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcc-cchHHHHh
Q 011553 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADD-VNLEEFVM 391 (483)
Q Consensus 313 ~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~-~~l~~la~ 391 (483)
+.|+..|++ ...+++||++||.++.|.+.+++ ||. .+.|..++.++...+|+..+....+.-+ ..+..++.
T Consensus 137 NALLKtLEE-----PP~~v~FILaTtd~~KIp~TIrS--RCq-~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~ 208 (830)
T PRK07003 137 NAMLKTLEE-----PPPHVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLAR 208 (830)
T ss_pred HHHHHHHHh-----cCCCeEEEEEECChhhccchhhh--heE-EEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666666654 34589999999999999999999 994 9999999999999999888766554422 23445555
Q ss_pred hccc
Q 011553 392 TKDE 395 (483)
Q Consensus 392 ~t~g 395 (483)
.+.|
T Consensus 209 ~A~G 212 (830)
T PRK07003 209 AAQG 212 (830)
T ss_pred HcCC
Confidence 5444
No 64
>PLN03025 replication factor C subunit; Provisional
Probab=99.72 E-value=5.9e-16 Score=156.29 Aligned_cols=247 Identities=19% Similarity=0.167 Sum_probs=160.5
Q ss_pred eecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC-----CceE
Q 011553 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS-----ATFL 254 (483)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~-----~~~~ 254 (483)
.|+++++|.+++|++|.+++++.|+.++... . ..++|||||||||||++|+++|+++. ..++
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~------------~-~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 68 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDG------------N-MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVL 68 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcC------------C-CceEEEECCCCCCHHHHHHHHHHHHhcccCcccee
Confidence 3778999999999999999999999877641 1 23599999999999999999999873 2466
Q ss_pred EEechHHHhhhcCCchHHHHHHHHHHh-------hcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcC
Q 011553 255 RVVGSELIQKYLGDGPKLVRELFRVAD-------DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS 327 (483)
Q Consensus 255 ~v~~~~l~~~~~g~~~~~i~~~f~~a~-------~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~ 327 (483)
.++.++..+ ...++....... ...+.||+|||+|.+ ....+..|...++..
T Consensus 69 eln~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l-----------t~~aq~aL~~~lE~~----- 126 (319)
T PLN03025 69 ELNASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM-----------TSGAQQALRRTMEIY----- 126 (319)
T ss_pred eeccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhc-----------CHHHHHHHHHHHhcc-----
Confidence 666654321 123333332211 123569999999998 345577777776532
Q ss_pred CCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCc-ccchHHHHhhccccchhhHHHHHH
Q 011553 328 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD-DVNLEEFVMTKDEFSGADIKTRRR 406 (483)
Q Consensus 328 ~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~t~g~~~~~i~~~~r 406 (483)
...+.+|++||..+.+.+++++ |+. .+.|++|+.++....++..+...++.- +..+..++. .+.+|++.+..
T Consensus 127 ~~~t~~il~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~----~~~gDlR~aln 199 (319)
T PLN03025 127 SNTTRFALACNTSSKIIEPIQS--RCA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIF----TADGDMRQALN 199 (319)
T ss_pred cCCceEEEEeCCccccchhHHH--hhh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HcCCCHHHHHH
Confidence 3356788899998899999998 884 899999999999999988776554432 223444443 34578888877
Q ss_pred HHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHH----HH---HHh-cCCCccHHHHHHHHHHHHh
Q 011553 407 IFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGL----LA---LRE-RRMKVTHTDFKKAKEKVMF 471 (483)
Q Consensus 407 ~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~----~A---~~~-~~~~it~ed~~~Al~~~~~ 471 (483)
.++..... ...++.+.+...........+..++..... .| +.+ -...+.+.++-..+..++.
T Consensus 200 ~Lq~~~~~---~~~i~~~~v~~~~~~~~~~~i~~~i~~~~~~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~~ 269 (319)
T PLN03025 200 NLQATHSG---FGFVNQENVFKVCDQPHPLHVKNIVRNCLKGKFDDACDGLKQLYDLGYSPTDIITTLFRVVK 269 (319)
T ss_pred HHHHHHhc---CCCCCHHHHHHHcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 77754321 124555555544444444455554443321 01 110 1234556666666655553
No 65
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=2.5e-16 Score=165.73 Aligned_cols=187 Identities=19% Similarity=0.262 Sum_probs=129.2
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC----------
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA---------- 251 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~---------- 251 (483)
.++++|.+|+|++|++.+++.|...+... ..+.++||+||||||||++|+++|+.+++
T Consensus 5 ~~kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~ 72 (472)
T PRK14962 5 YRKYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCN 72 (472)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCc
Confidence 35778999999999999999998887752 34567999999999999999999998764
Q ss_pred --------------ceEEEechHHHhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHHH
Q 011553 252 --------------TFLRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQR 313 (483)
Q Consensus 252 --------------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 313 (483)
.++.++++. ..+...++.+...+... ...||||||+|.+ ....+.
T Consensus 73 ~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~L-----------t~~a~~ 135 (472)
T PRK14962 73 ECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHML-----------TKEAFN 135 (472)
T ss_pred ccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHh-----------HHHHHH
Confidence 244444321 11223455555544322 3469999999998 233444
Q ss_pred HHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcc-cchHHHHhh
Q 011553 314 TMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADD-VNLEEFVMT 392 (483)
Q Consensus 314 ~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~ 392 (483)
.|+..+. . +.+.+++|++|+.+..+++++.+ |+. .+.|.+++.++...+++..+....+.-+ ..+..++..
T Consensus 136 ~LLk~LE---~--p~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~ 207 (472)
T PRK14962 136 ALLKTLE---E--PPSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKR 207 (472)
T ss_pred HHHHHHH---h--CCCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 5555444 2 24578888888888899999998 985 8999999999999999887765443322 224444443
Q ss_pred ccccchhhHHHHHHHHH
Q 011553 393 KDEFSGADIKTRRRIFQ 409 (483)
Q Consensus 393 t~g~~~~~i~~~~r~~~ 409 (483)
+ .++++.+...++
T Consensus 208 s----~GdlR~aln~Le 220 (472)
T PRK14962 208 A----SGGLRDALTMLE 220 (472)
T ss_pred h----CCCHHHHHHHHH
Confidence 3 344444444443
No 66
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=6.8e-16 Score=158.39 Aligned_cols=169 Identities=19% Similarity=0.241 Sum_probs=119.2
Q ss_pred ecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEE-----
Q 011553 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLR----- 255 (483)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~----- 255 (483)
..++++|.+|++|+|++.+++.++..+... ..++.+||+||||||||++|+++|+.+.+....
T Consensus 6 l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc 73 (363)
T PRK14961 6 LARKWRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPC 73 (363)
T ss_pred HHHHhCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 356788899999999999999999988651 345668999999999999999999988642100
Q ss_pred ---EechHHHhh----------hcCCchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHHHHHHHH
Q 011553 256 ---VVGSELIQK----------YLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLEL 318 (483)
Q Consensus 256 ---v~~~~l~~~----------~~g~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l 318 (483)
.+|.++... ........++.+...+... ...|++|||+|.+ +...+..++..
T Consensus 74 ~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-----------~~~a~naLLk~ 142 (363)
T PRK14961 74 RKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML-----------SRHSFNALLKT 142 (363)
T ss_pred CCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc-----------CHHHHHHHHHH
Confidence 011111110 0001234455555554322 2359999999998 33344555555
Q ss_pred HHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCC
Q 011553 319 LNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTL 380 (483)
Q Consensus 319 L~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~ 380 (483)
+.+ +...+.+|++|+.++.+.+++.+ |+ ..++|++|+.++...++...+...+.
T Consensus 143 lEe-----~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~ 196 (363)
T PRK14961 143 LEE-----PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESI 196 (363)
T ss_pred Hhc-----CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 543 34578888888888889999988 88 48999999999999999887766543
No 67
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=3.2e-16 Score=167.01 Aligned_cols=175 Identities=15% Similarity=0.218 Sum_probs=127.3
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC----------
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA---------- 251 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~---------- 251 (483)
.+++++.+|++|+|++.+++.|..++.. -..++++||+||+|||||++|+++|+.+++
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg 73 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCE 73 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCc
Confidence 4577889999999999999999999875 244567999999999999999999998865
Q ss_pred --------------ceEEEechHHHhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChHHHHH
Q 011553 252 --------------TFLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQR 313 (483)
Q Consensus 252 --------------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 313 (483)
.++.++++. ......++.+...+.. ....|+||||+|.| +.....
T Consensus 74 ~C~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L-----------S~~A~N 136 (702)
T PRK14960 74 VCATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML-----------STHSFN 136 (702)
T ss_pred cCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc-----------CHHHHH
Confidence 223333321 1123445666554432 23469999999998 344556
Q ss_pred HHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccc-hHHHHhh
Q 011553 314 TMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVN-LEEFVMT 392 (483)
Q Consensus 314 ~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~-l~~la~~ 392 (483)
.|+..|++ +...+.||++|+.+..+++.+++ |+. ++.|.+++.++....+...+....+.-+.+ +..++..
T Consensus 137 ALLKtLEE-----PP~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~ 208 (702)
T PRK14960 137 ALLKTLEE-----PPEHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAES 208 (702)
T ss_pred HHHHHHhc-----CCCCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 66666653 34678899999999999999988 995 999999999999999988877655443322 3444433
Q ss_pred c
Q 011553 393 K 393 (483)
Q Consensus 393 t 393 (483)
+
T Consensus 209 S 209 (702)
T PRK14960 209 A 209 (702)
T ss_pred c
Confidence 3
No 68
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.70 E-value=4.8e-16 Score=162.25 Aligned_cols=155 Identities=26% Similarity=0.392 Sum_probs=117.8
Q ss_pred cccCCCCCcccccccHHHHHH---HHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEec
Q 011553 182 VEKAPLESYADIGGLDAQIQE---IKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~---l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~ 258 (483)
.++.++.+++|++|.+..+.. |...+.. ....+++|+||||||||++|+++|+.++..|+.+++
T Consensus 3 a~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a 69 (413)
T PRK13342 3 AERMRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSA 69 (413)
T ss_pred hhhhCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 456788899999999999776 7777754 223479999999999999999999999999999987
Q ss_pred hHHHhhhcCCchHHHHHHHHHHh----hcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEE
Q 011553 259 SELIQKYLGDGPKLVRELFRVAD----DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVI 334 (483)
Q Consensus 259 ~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI 334 (483)
... ....++.++..+. .....||||||+|.+ +...+..|+..+. .+.+++|
T Consensus 70 ~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l-----------~~~~q~~LL~~le-------~~~iilI 124 (413)
T PRK13342 70 VTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRF-----------NKAQQDALLPHVE-------DGTITLI 124 (413)
T ss_pred ccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhh-----------CHHHHHHHHHHhh-------cCcEEEE
Confidence 542 2234455555543 224579999999988 3445566666554 2457777
Q ss_pred EEeC--CCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcC
Q 011553 335 LATN--RIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR 377 (483)
Q Consensus 335 ~ttn--~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~ 377 (483)
++|+ ....+++++++ |+ .++.|++++.++...+++..+..
T Consensus 125 ~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 125 GATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred EeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 7653 34578899999 98 58999999999999999877654
No 69
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=2.4e-16 Score=167.50 Aligned_cols=220 Identities=14% Similarity=0.148 Sum_probs=145.3
Q ss_pred ecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc--------
Q 011553 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (483)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~-------- 252 (483)
..+++++.+|+||+|++.+++.|..++.. -..+..+||+||+|||||++|+++|+.+++.
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pC 73 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPC 73 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccC
Confidence 45788999999999999999999999865 2446678999999999999999999988652
Q ss_pred ----------------eEEEechHHHhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChHHHH
Q 011553 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (483)
Q Consensus 253 ----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 312 (483)
++.++++. ......++.+.+.+.. ....|+||||+|.| +.+..
T Consensus 74 g~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l-----------s~~a~ 136 (509)
T PRK14958 74 NDCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML-----------SGHSF 136 (509)
T ss_pred CCCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc-----------CHHHH
Confidence 34444321 1223445666655432 22359999999999 34455
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcc-cchHHHHh
Q 011553 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADD-VNLEEFVM 391 (483)
Q Consensus 313 ~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~-~~l~~la~ 391 (483)
..|+..|++ +...+.||++|+.+..+.+.+++ |+. .++|..++.++....+...+...++.-+ ..+..++.
T Consensus 137 naLLk~LEe-----pp~~~~fIlattd~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~ 208 (509)
T PRK14958 137 NALLKTLEE-----PPSHVKFILATTDHHKLPVTVLS--RCL-QFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLAR 208 (509)
T ss_pred HHHHHHHhc-----cCCCeEEEEEECChHhchHHHHH--Hhh-hhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 566666653 34578899999999999999988 884 8899999999888888877766554322 22334443
Q ss_pred hccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHH
Q 011553 392 TKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICT 443 (483)
Q Consensus 392 ~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~ 443 (483)
.+ .++++.+.+.+...... . ...+..+.+...........+..++.
T Consensus 209 ~s----~GslR~al~lLdq~ia~-~-~~~It~~~V~~~lg~~~~~~i~~ll~ 254 (509)
T PRK14958 209 AA----NGSVRDALSLLDQSIAY-G-NGKVLIADVKTMLGTIEPLLLFDILE 254 (509)
T ss_pred Hc----CCcHHHHHHHHHHHHhc-C-CCCcCHHHHHHHHCCCCHHHHHHHHH
Confidence 33 23444444443221111 0 12445555555444444455555544
No 70
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.70 E-value=1.3e-15 Score=154.55 Aligned_cols=196 Identities=19% Similarity=0.284 Sum_probs=135.0
Q ss_pred ceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC-----Cce
Q 011553 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS-----ATF 253 (483)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~-----~~~ 253 (483)
.+|.+++.+.+|++++|.+++++.+..++..+ ...+++|+||||||||++|+++|+++. .++
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~ 69 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNF 69 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccce
Confidence 46889999999999999999999999988652 123699999999999999999999874 357
Q ss_pred EEEechHHHhhh---c----------CC-------chHHHHHHHHHHhh-----cCCeEEEEcCCccccccccCCCCCCh
Q 011553 254 LRVVGSELIQKY---L----------GD-------GPKLVRELFRVADD-----LSPSIVFIDEIDAVGTKRYDAHSGGE 308 (483)
Q Consensus 254 ~~v~~~~l~~~~---~----------g~-------~~~~i~~~f~~a~~-----~~p~Il~iDEiD~l~~~r~~~~~~~~ 308 (483)
+.++++++.... . +. ....++.+...... ..+.+|+|||+|.+ .
T Consensus 70 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l-----------~ 138 (337)
T PRK12402 70 TEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL-----------R 138 (337)
T ss_pred EEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC-----------C
Confidence 888887764221 0 10 11223333322222 22459999999988 2
Q ss_pred HHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCc-ccchH
Q 011553 309 REIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD-DVNLE 387 (483)
Q Consensus 309 ~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~-~~~l~ 387 (483)
...+..|..+++.. ...+.+|++++.+..+.+.|.+ |+ ..+.|.+|+.++...+++..+....+.- +..+.
T Consensus 139 ~~~~~~L~~~le~~-----~~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~ 210 (337)
T PRK12402 139 EDAQQALRRIMEQY-----SRTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLE 210 (337)
T ss_pred HHHHHHHHHHHHhc-----cCCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 34456666666542 2345677777777778888887 87 4899999999999999998876655442 22344
Q ss_pred HHHhhccccchhhHHHHHHHHHH
Q 011553 388 EFVMTKDEFSGADIKTRRRIFQI 410 (483)
Q Consensus 388 ~la~~t~g~~~~~i~~~~r~~~~ 410 (483)
.++.. ++++++.+...++.
T Consensus 211 ~l~~~----~~gdlr~l~~~l~~ 229 (337)
T PRK12402 211 LIAYY----AGGDLRKAILTLQT 229 (337)
T ss_pred HHHHH----cCCCHHHHHHHHHH
Confidence 44443 35666666655554
No 71
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=6.9e-16 Score=166.36 Aligned_cols=162 Identities=19% Similarity=0.297 Sum_probs=122.1
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc---------
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT--------- 252 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~--------- 252 (483)
.+++++.+|++|+|++.+++.|...+..- ..++.+||+||+|||||++|+++|+.+++.
T Consensus 7 a~KyRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCG 74 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCC
Confidence 45678899999999999999999988751 345668999999999999999999988762
Q ss_pred ---------------eEEEechHHHhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChHHHHH
Q 011553 253 ---------------FLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQR 313 (483)
Q Consensus 253 ---------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 313 (483)
|+.++++. ......++.+...+.. ....|+||||+|.| +...+.
T Consensus 75 ~C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----------s~~a~N 137 (647)
T PRK07994 75 ECDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----------SRHSFN 137 (647)
T ss_pred CCHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----------CHHHHH
Confidence 22222211 0122345555554432 23459999999999 455666
Q ss_pred HHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCC
Q 011553 314 TMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTL 380 (483)
Q Consensus 314 ~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~ 380 (483)
.|+..|++ +...++||++|+.++.+.+.+++ |+ ..+.|..++.++....+...+....+
T Consensus 138 ALLKtLEE-----Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i 196 (647)
T PRK07994 138 ALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQI 196 (647)
T ss_pred HHHHHHHc-----CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 67776664 45688999999999999999999 98 59999999999999988887755443
No 72
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=7.5e-16 Score=162.79 Aligned_cols=171 Identities=15% Similarity=0.224 Sum_probs=124.4
Q ss_pred eecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCce------
Q 011553 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATF------ 253 (483)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~------ 253 (483)
.+..++++.+|+|++|++.+++.|..++.. -..+.++||+||||||||++|+++|+.+++..
T Consensus 10 ~la~kyRP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~ 77 (507)
T PRK06645 10 PFARKYRPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENT 77 (507)
T ss_pred chhhhhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCc
Confidence 356788999999999999999999887765 24467799999999999999999999886521
Q ss_pred ------EEEechHHHhhh----------cCCchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHHH
Q 011553 254 ------LRVVGSELIQKY----------LGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQR 313 (483)
Q Consensus 254 ------~~v~~~~l~~~~----------~g~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 313 (483)
..-+|..+.... ...+...++.+++.+... ...|++|||+|.+ +.....
T Consensus 78 ~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L-----------s~~a~n 146 (507)
T PRK06645 78 TIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML-----------SKGAFN 146 (507)
T ss_pred CcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc-----------CHHHHH
Confidence 011122221110 112345667777766543 2459999999988 233344
Q ss_pred HHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCC
Q 011553 314 TMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA 381 (483)
Q Consensus 314 ~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~ 381 (483)
.|+..+. . +...++||++|+.++.+++++++ |+. .++|..++.++...+++..+...+..
T Consensus 147 aLLk~LE---e--pp~~~vfI~aTte~~kI~~tI~S--Rc~-~~ef~~ls~~el~~~L~~i~~~egi~ 206 (507)
T PRK06645 147 ALLKTLE---E--PPPHIIFIFATTEVQKIPATIIS--RCQ-RYDLRRLSFEEIFKLLEYITKQENLK 206 (507)
T ss_pred HHHHHHh---h--cCCCEEEEEEeCChHHhhHHHHh--cce-EEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4544444 2 35678899999988899999988 884 89999999999999999888765543
No 73
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.68 E-value=7.6e-16 Score=172.76 Aligned_cols=169 Identities=23% Similarity=0.306 Sum_probs=129.6
Q ss_pred cCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC----------Cce
Q 011553 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS----------ATF 253 (483)
Q Consensus 184 ~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~----------~~~ 253 (483)
.+.+.++++++|.+..+.++.+.+.. ....+++|+||||||||++|+.+|..+. ..+
T Consensus 180 ~~r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i 246 (852)
T TIGR03345 180 QAREGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRL 246 (852)
T ss_pred HhcCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeE
Confidence 45667888999999998888776654 2345699999999999999999999762 457
Q ss_pred EEEechHHHh--hhcCCchHHHHHHHHHHhh-cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCC
Q 011553 254 LRVVGSELIQ--KYLGDGPKLVRELFRVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD 330 (483)
Q Consensus 254 ~~v~~~~l~~--~~~g~~~~~i~~~f~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~ 330 (483)
+.++.+.+.. .|.|+.+..++.+|..+.. ..+.|||||||+.+...+.. .+..+....|...+ .++.
T Consensus 247 ~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~---~~~~d~~n~Lkp~l-------~~G~ 316 (852)
T TIGR03345 247 LSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQ---AGQGDAANLLKPAL-------ARGE 316 (852)
T ss_pred EEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCc---cccccHHHHhhHHh-------hCCC
Confidence 7777777653 6788888999999998864 45789999999999765421 12223333444443 2678
Q ss_pred eEEEEEeCCC-----CCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCC
Q 011553 331 VKVILATNRI-----ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM 378 (483)
Q Consensus 331 v~vI~ttn~~-----~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~ 378 (483)
+.+|+||+.. ..+|++|.| ||. .|.++.|+.++...||+.+...+
T Consensus 317 l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~ 366 (852)
T TIGR03345 317 LRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVL 366 (852)
T ss_pred eEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhh
Confidence 9999999863 348999999 996 89999999999999987655443
No 74
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=2.8e-15 Score=157.37 Aligned_cols=175 Identities=18% Similarity=0.274 Sum_probs=127.6
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC----------
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA---------- 251 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~---------- 251 (483)
..++++.+|+||+|++.+++.|..++.. -..+.++||+||+|+|||++|+.+|+.+++
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~~~------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg 71 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAFTL------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCG 71 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcc
Confidence 4578889999999999999999988875 245678999999999999999999987642
Q ss_pred --------------ceEEEechHHHhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHHH
Q 011553 252 --------------TFLRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQR 313 (483)
Q Consensus 252 --------------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 313 (483)
.++.++++. ..+...++.+.+.+... ...|++|||+|.| +.+.+.
T Consensus 72 ~C~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-----------s~~A~N 134 (491)
T PRK14964 72 TCHNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHML-----------SNSAFN 134 (491)
T ss_pred ccHHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhC-----------CHHHHH
Confidence 334444432 12335567777666433 3459999999988 333444
Q ss_pred HHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCccc-chHHHHhh
Q 011553 314 TMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDV-NLEEFVMT 392 (483)
Q Consensus 314 ~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~-~l~~la~~ 392 (483)
.|+..|+ . +...+.+|++|+.++.+.+.+++ |+. .+.|.+++.++....+...+...+..-+. .+..++..
T Consensus 135 aLLK~LE---e--Pp~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~ 206 (491)
T PRK14964 135 ALLKTLE---E--PAPHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAEN 206 (491)
T ss_pred HHHHHHh---C--CCCCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 5555544 3 34678899999988899999998 985 89999999999999998877765544322 24444444
Q ss_pred c
Q 011553 393 K 393 (483)
Q Consensus 393 t 393 (483)
+
T Consensus 207 s 207 (491)
T PRK14964 207 S 207 (491)
T ss_pred c
Confidence 4
No 75
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.9e-15 Score=162.45 Aligned_cols=170 Identities=19% Similarity=0.235 Sum_probs=122.8
Q ss_pred ecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEE--E--
Q 011553 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLR--V-- 256 (483)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~--v-- 256 (483)
..+++++.+|+||+|++.+++.|+.++... +.++++||+||+|||||++|+++|+.+++.-.. .
T Consensus 6 LarKYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pC 73 (709)
T PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPC 73 (709)
T ss_pred HHHHhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCC
Confidence 356788999999999999999999998752 446779999999999999999999987652100 0
Q ss_pred ----echHHHh-h---------hcCCchHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHH
Q 011553 257 ----VGSELIQ-K---------YLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLEL 318 (483)
Q Consensus 257 ----~~~~l~~-~---------~~g~~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l 318 (483)
.|..+.. . ....+...++.++..+.. ....||||||+|.| +......|+..
T Consensus 74 g~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-----------s~~A~NALLKt 142 (709)
T PRK08691 74 GVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-----------SKSAFNAMLKT 142 (709)
T ss_pred cccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-----------CHHHHHHHHHH
Confidence 0111100 0 011223456677665432 23469999999988 33344555555
Q ss_pred HHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCC
Q 011553 319 LNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA 381 (483)
Q Consensus 319 L~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~ 381 (483)
|.+ ....+.||++|+.+..+.+.+++ |+. .+.|+.++.++...++...+...++.
T Consensus 143 LEE-----Pp~~v~fILaTtd~~kL~~TIrS--RC~-~f~f~~Ls~eeI~~~L~~Il~kEgi~ 197 (709)
T PRK08691 143 LEE-----PPEHVKFILATTDPHKVPVTVLS--RCL-QFVLRNMTAQQVADHLAHVLDSEKIA 197 (709)
T ss_pred HHh-----CCCCcEEEEEeCCccccchHHHH--HHh-hhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 553 34678899999999999999987 984 88999999999999999888766554
No 76
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.8e-15 Score=165.62 Aligned_cols=168 Identities=18% Similarity=0.198 Sum_probs=121.7
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceE-E----E
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFL-R----V 256 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~-~----v 256 (483)
.+++++.+|++|+|++.+++.|+.++... +.++.+||+||||||||++|+++|+.+++... . -
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg 74 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCG 74 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCC
Confidence 45788899999999999999999988651 34566899999999999999999999876310 0 0
Q ss_pred ---echHHHhhh------c-C---CchHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHH
Q 011553 257 ---VGSELIQKY------L-G---DGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELL 319 (483)
Q Consensus 257 ---~~~~l~~~~------~-g---~~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL 319 (483)
+|-.+.... + + .....++.+...+.. ....|+||||+|.| +.+.+..|+..|
T Consensus 75 ~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----------T~eAqNALLKtL 143 (944)
T PRK14949 75 VCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----------SRSSFNALLKTL 143 (944)
T ss_pred CchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----------CHHHHHHHHHHH
Confidence 111111100 0 0 122345555544432 23459999999999 555667776666
Q ss_pred HhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCC
Q 011553 320 NQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTL 380 (483)
Q Consensus 320 ~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~ 380 (483)
++ +...++||++|+.+..|.+.+++ |+ .++.|.+++.++....+...+....+
T Consensus 144 EE-----PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI 196 (944)
T PRK14949 144 EE-----PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQL 196 (944)
T ss_pred hc-----cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 53 35678899999999999999999 98 58999999999999988877765433
No 77
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.67 E-value=8.3e-16 Score=147.99 Aligned_cols=196 Identities=20% Similarity=0.249 Sum_probs=141.4
Q ss_pred ceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc------
Q 011553 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT------ 252 (483)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~------ 252 (483)
..|.+++.+-+|+++.|++.+++.|+..+.. ..-.++|||||||||||+.|+++|.++..+
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~r 90 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCR 90 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccc
Confidence 3478899999999999999999999999865 112359999999999999999999998762
Q ss_pred eEEEechHHHhhhcCCchHHHHHHHHHHhhc---------CC-eEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhc
Q 011553 253 FLRVVGSELIQKYLGDGPKLVRELFRVADDL---------SP-SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQL 322 (483)
Q Consensus 253 ~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~---------~p-~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l 322 (483)
+...+.++..+..+. ...+. -|...... .| .||+|||+|.| ..+.+.+|...++.
T Consensus 91 vl~lnaSderGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----------tsdaq~aLrr~mE~- 155 (346)
T KOG0989|consen 91 VLELNASDERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSM-----------TSDAQAALRRTMED- 155 (346)
T ss_pred hhhhcccccccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhh-----------hHHHHHHHHHHHhc-
Confidence 233334433322211 11111 12222111 12 59999999999 56778888777763
Q ss_pred cCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccc-hHHHHhhccccchhhH
Q 011553 323 DGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVN-LEEFVMTKDEFSGADI 401 (483)
Q Consensus 323 ~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~-l~~la~~t~g~~~~~i 401 (483)
....++||+.||..+.|++.+.+ |+. .+.|+....+.....|+......++.-+.+ +..++.. +.+++
T Consensus 156 ----~s~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~----S~GdL 224 (346)
T KOG0989|consen 156 ----FSRTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKI----SDGDL 224 (346)
T ss_pred ----cccceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH----cCCcH
Confidence 24578999999999999999999 997 899998888888888888877776664444 4455544 45677
Q ss_pred HHHHHHHHHhhc
Q 011553 402 KTRRRIFQIHTS 413 (483)
Q Consensus 402 ~~~~r~~~~~~~ 413 (483)
+.+...+|..+.
T Consensus 225 R~Ait~Lqsls~ 236 (346)
T KOG0989|consen 225 RRAITTLQSLSL 236 (346)
T ss_pred HHHHHHHHHhhc
Confidence 777777776665
No 78
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.67 E-value=9e-16 Score=154.39 Aligned_cols=257 Identities=18% Similarity=0.211 Sum_probs=153.0
Q ss_pred CCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC-------C--ceEEE
Q 011553 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS-------A--TFLRV 256 (483)
Q Consensus 186 ~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~-------~--~~~~v 256 (483)
.+..|++|+|++++++.+.-++..+ ...++||+|+||||||++|++++..+. . .+.++
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 4567999999999999887654321 124699999999999999999999883 2 22211
Q ss_pred ech---------HHHhh---h----cCCchH-HH-----HH-------HHHHH--hhcCCeEEEEcCCccccccccCCCC
Q 011553 257 VGS---------ELIQK---Y----LGDGPK-LV-----RE-------LFRVA--DDLSPSIVFIDEIDAVGTKRYDAHS 305 (483)
Q Consensus 257 ~~~---------~l~~~---~----~g~~~~-~i-----~~-------~f~~a--~~~~p~Il~iDEiD~l~~~r~~~~~ 305 (483)
.+. ++... + .+.++. .+ .. .|... .....++||+||++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl--------- 140 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL--------- 140 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC---------
Confidence 110 00000 0 000000 00 00 01110 0112359999999998
Q ss_pred CChHHHHHHHHHHHHhcc------CC--cCCCCeEEEEEeCCCC-CCChhhcCCCccceEEEcCCCCH-HHHHHHHHHHH
Q 011553 306 GGEREIQRTMLELLNQLD------GF--DSRGDVKVILATNRIE-SLDPALLRPGRIDRKIEFPLPDI-KTRRRIFQIHT 375 (483)
Q Consensus 306 ~~~~~~~~~l~~lL~~l~------~~--~~~~~v~vI~ttn~~~-~ld~allr~gR~~~~i~~~~P~~-~~r~~Il~~~~ 375 (483)
+...+..|++.+++-. +. ....++++|+|+|..+ .+++++++ ||...+.++.|.. ++|.+|+....
T Consensus 141 --~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 141 --EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred --CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 6678899999887422 21 1234688899888644 58899999 9999999998866 89999998754
Q ss_pred cCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCC--HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhc
Q 011553 376 SRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVN--LEEFVMTKDEFSGADIKAICTEAGLLALRER 453 (483)
Q Consensus 376 ~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~--l~~la~~~~g~s~~di~~l~~~A~~~A~~~~ 453 (483)
.... .. ..+........-.+..+|..++..+. ...+.+.+- +..++..+..-+.+--..+++.|...|+.++
T Consensus 217 ~~~~-~~-~~~~~~~~~~~~~~~~~i~~a~~~~~----~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~G 290 (334)
T PRK13407 217 AYDA-DH-DAFMAKWGAEDMQLRGRILGARARLP----QLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEG 290 (334)
T ss_pred cccc-cc-hhhhccccccccCCHHHHHHHHHhcC----CcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcC
Confidence 3211 00 00000000011234445544433332 222221110 2222222222233333349999999999999
Q ss_pred CCCccHHHHHHHHHHHHhhcc
Q 011553 454 RMKVTHTDFKKAKEKVMFKKK 474 (483)
Q Consensus 454 ~~~it~ed~~~Al~~~~~~~~ 474 (483)
+..|+.+|+..+..-++....
T Consensus 291 r~~V~~~Di~~~~~~vl~hR~ 311 (334)
T PRK13407 291 AEAVGRSHLRSVATMALSHRL 311 (334)
T ss_pred CCeeCHHHHHHHHHHhhhhhc
Confidence 999999999999888876544
No 79
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.67 E-value=3.6e-15 Score=153.25 Aligned_cols=226 Identities=24% Similarity=0.312 Sum_probs=145.4
Q ss_pred ccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---------CceEEEechHH
Q 011553 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---------ATFLRVVGSEL 261 (483)
Q Consensus 191 ~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~---------~~~~~v~~~~l 261 (483)
.++.|.++.++.|..++...+. + ..+.+++|+||||||||++++++++.+. ..+++++|...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 3678999999999998864221 1 3355799999999999999999998653 46788887543
Q ss_pred Hh----------hhc--CC--------chHHHHHHHHHHhh-cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHH
Q 011553 262 IQ----------KYL--GD--------GPKLVRELFRVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLN 320 (483)
Q Consensus 262 ~~----------~~~--g~--------~~~~i~~~f~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~ 320 (483)
.. ... |. ....+..++..... ..+.||+|||+|.+... . +..+..++.
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~--------~---~~~L~~l~~ 154 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD--------D---DDLLYQLSR 154 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC--------C---cHHHHhHhc
Confidence 21 111 11 12233445554432 34679999999999521 1 123444443
Q ss_pred hccC-CcCCCCeEEEEEeCCCC---CCChhhcCCCccc-eEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccc
Q 011553 321 QLDG-FDSRGDVKVILATNRIE---SLDPALLRPGRID-RKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE 395 (483)
Q Consensus 321 ~l~~-~~~~~~v~vI~ttn~~~---~ld~allr~gR~~-~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g 395 (483)
..+. ..+..++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++.++.........+
T Consensus 155 ~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~---------- 222 (365)
T TIGR02928 155 ARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLD---------- 222 (365)
T ss_pred cccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCC----------
Confidence 2111 11235789999999875 47788877 774 6799999999999999998875211000000
Q ss_pred cchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 011553 396 FSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 396 ~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~ 470 (483)
...+. -...++..+.|. .+.+..+|+.|+..|..++...|+.+|+..|+..+.
T Consensus 223 --~~~l~-------------------~i~~~~~~~~Gd-~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 223 --DGVIP-------------------LCAALAAQEHGD-ARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred --hhHHH-------------------HHHHHHHHhcCC-HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 00000 011223333343 355667899999888888888999999999888764
No 80
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.66 E-value=1.2e-15 Score=153.69 Aligned_cols=163 Identities=21% Similarity=0.267 Sum_probs=121.4
Q ss_pred ceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEec
Q 011553 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (483)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~ 258 (483)
.+|.+++++.++++++|.+++++.+..++.. -..+..+||+||||+|||++++++|++++.+++.+++
T Consensus 9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~ 76 (316)
T PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVKK------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNG 76 (316)
T ss_pred CcceeccCCCcHHHhcCcHHHHHHHHHHHhc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEecc
Confidence 6789999999999999999999999998864 1335567779999999999999999999999999988
Q ss_pred hHHHhhhcCCchHHHHHHHHHHh-hcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEe
Q 011553 259 SELIQKYLGDGPKLVRELFRVAD-DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (483)
Q Consensus 259 ~~l~~~~~g~~~~~i~~~f~~a~-~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~tt 337 (483)
++ .. .......+........ ...+.||+|||+|.+. ..+.+..+..+++.. ..++.||++|
T Consensus 77 ~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----------~~~~~~~L~~~le~~-----~~~~~~Ilt~ 138 (316)
T PHA02544 77 SD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----------LADAQRHLRSFMEAY-----SKNCSFIITA 138 (316)
T ss_pred Cc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----------CHHHHHHHHHHHHhc-----CCCceEEEEc
Confidence 76 11 1111111222111111 1246799999999872 223455666666542 3567899999
Q ss_pred CCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHH
Q 011553 338 NRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIH 374 (483)
Q Consensus 338 n~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~ 374 (483)
|.++.+++++++ ||. .+.|+.|+.+++..++...
T Consensus 139 n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 139 NNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred CChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHH
Confidence 999999999998 995 8899999999998877643
No 81
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=4.7e-15 Score=159.62 Aligned_cols=164 Identities=18% Similarity=0.235 Sum_probs=120.9
Q ss_pred ecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc--------
Q 011553 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (483)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~-------- 252 (483)
..+++++.+|++|+|++.+++.|..++..- ..+..+||+||+|||||++|+++|+.+++.
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~ 73 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGI 73 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCC
Confidence 456788999999999999999999988752 345668999999999999999999988641
Q ss_pred ---------------------eEEEechHHHhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCC
Q 011553 253 ---------------------FLRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGG 307 (483)
Q Consensus 253 ---------------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~ 307 (483)
|+.++++. ......++.+.+.+... ...|++|||+|.|
T Consensus 74 ~~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L----------- 136 (618)
T PRK14951 74 TATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML----------- 136 (618)
T ss_pred CCCCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC-----------
Confidence 22222110 11233566666655432 2359999999998
Q ss_pred hHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCC
Q 011553 308 EREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA 381 (483)
Q Consensus 308 ~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~ 381 (483)
+.+.++.|+..|+ . +...+.||++|+.+..+.+.+++ |+ ..++|..++.++....++..+...++.
T Consensus 137 s~~a~NaLLKtLE---E--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 137 TNTAFNAMLKTLE---E--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred CHHHHHHHHHhcc---c--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 3334444444443 3 34678899999989999999988 88 599999999999999998877665544
No 82
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.65 E-value=3.7e-15 Score=150.27 Aligned_cols=259 Identities=19% Similarity=0.225 Sum_probs=163.4
Q ss_pred CCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC-------CceEEE-
Q 011553 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS-------ATFLRV- 256 (483)
Q Consensus 185 ~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~-------~~~~~v- 256 (483)
.+...|++|+|+++.+..|...+..| ...|+||.|++|||||++|++++..+. .+|...
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p 77 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHP 77 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCC
Confidence 45568999999999999998887764 234799999999999999999987653 233200
Q ss_pred -----echHHHhhh-------------------cCCchHH------HHHHHHHHh---------hcCCeEEEEcCCcccc
Q 011553 257 -----VGSELIQKY-------------------LGDGPKL------VRELFRVAD---------DLSPSIVFIDEIDAVG 297 (483)
Q Consensus 257 -----~~~~l~~~~-------------------~g~~~~~------i~~~f~~a~---------~~~p~Il~iDEiD~l~ 297 (483)
.++.+.... .|.++.. +...|..+. ....++||+||++.+
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL- 156 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL- 156 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC-
Confidence 011111100 1111111 111122111 112369999999998
Q ss_pred ccccCCCCCChHHHHHHHHHHHHhc------cCCc--CCCCeEEEEEeCCCC-CCChhhcCCCccceEEEcCCCC-HHHH
Q 011553 298 TKRYDAHSGGEREIQRTMLELLNQL------DGFD--SRGDVKVILATNRIE-SLDPALLRPGRIDRKIEFPLPD-IKTR 367 (483)
Q Consensus 298 ~~r~~~~~~~~~~~~~~l~~lL~~l------~~~~--~~~~v~vI~ttn~~~-~ld~allr~gR~~~~i~~~~P~-~~~r 367 (483)
+...|..|++.+.+- ++.. ...++++|+|.|..+ .++++|++ ||...+.+..|+ .+.+
T Consensus 157 ----------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e 224 (350)
T CHL00081 157 ----------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELR 224 (350)
T ss_pred ----------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHH
Confidence 667888899988652 1211 134688888888655 58999999 999999999997 5999
Q ss_pred HHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCC--HHHHHhcCCCCCHHHHHHHHHHH
Q 011553 368 RRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVN--LEEFVMTKDEFSGADIKAICTEA 445 (483)
Q Consensus 368 ~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~--l~~la~~~~g~s~~di~~l~~~A 445 (483)
.+|++....... .......... ...-.+..+|..++..+. ...+.+.+- +..++..+..-|.|--..+++.|
T Consensus 225 ~~il~~~~~~~~-~~~~~~~~~~-~~~~~~~~~I~~ar~~~~----~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raA 298 (350)
T CHL00081 225 VKIVEQRTSFDK-NPQEFREKYE-ESQEELRSKIVAAQNLLP----KVEIDYDLRVKISQICSELDVDGLRGDIVTNRAA 298 (350)
T ss_pred HHHHHhhhcccc-Chhhhhhhhc-cccccCHHHHHHHHHhcC----CCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHH
Confidence 999987532110 0100001110 111124455554443332 222222211 22334444444677777899999
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhhccC
Q 011553 446 GLLALRERRMKVTHTDFKKAKEKVMFKKKE 475 (483)
Q Consensus 446 ~~~A~~~~~~~it~ed~~~Al~~~~~~~~~ 475 (483)
...|+.+++..|+++|+..+..-++.....
T Consensus 299 rA~Aal~GR~~V~pdDv~~~a~~vL~HR~~ 328 (350)
T CHL00081 299 KALAAFEGRTEVTPKDIFKVITLCLRHRLR 328 (350)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999986654
No 83
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=4.7e-15 Score=157.31 Aligned_cols=217 Identities=14% Similarity=0.176 Sum_probs=142.5
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC-----------
Q 011553 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA----------- 251 (483)
Q Consensus 183 ~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~----------- 251 (483)
+++++.+|+||+|++.++..|..++... ..+..+||+||||||||++|+++|+.+.+
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 5778899999999999999999988752 34566899999999999999999998753
Q ss_pred ------------ceEEEechHHHhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChHHHHHHH
Q 011553 252 ------------TFLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM 315 (483)
Q Consensus 252 ------------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l 315 (483)
.++.++++. ......++++...+.. ..+.||+|||+|.+ ....+..|
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-----------s~~a~naL 136 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-----------SKSAFNAL 136 (504)
T ss_pred hhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc-----------CHHHHHHH
Confidence 133333321 1123445555444432 23569999999987 22334444
Q ss_pred HHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCccc-chHHHHhhcc
Q 011553 316 LELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDV-NLEEFVMTKD 394 (483)
Q Consensus 316 ~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~-~l~~la~~t~ 394 (483)
+..++. +...+++|++|+.+..+.+.+.+ |+. .+.|.+|+.++...++...+...++.-+. .+..++..
T Consensus 137 ---Lk~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~-- 206 (504)
T PRK14963 137 ---LKTLEE--PPEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARL-- 206 (504)
T ss_pred ---HHHHHh--CCCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--
Confidence 444433 24568888889999999999988 885 89999999999999999887765544322 23444433
Q ss_pred ccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHH
Q 011553 395 EFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICT 443 (483)
Q Consensus 395 g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~ 443 (483)
+.++++.+...++..... ...+..+.+......-...++..++.
T Consensus 207 --s~GdlR~aln~Lekl~~~---~~~It~~~V~~~l~~~~~~~if~Li~ 250 (504)
T PRK14963 207 --ADGAMRDAESLLERLLAL---GTPVTRKQVEEALGLPPQERLRGIAA 250 (504)
T ss_pred --cCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHCCCcHHHHHHHHH
Confidence 345666666555543321 12344444444333333444555544
No 84
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.65 E-value=1.4e-14 Score=150.38 Aligned_cols=224 Identities=23% Similarity=0.268 Sum_probs=143.8
Q ss_pred ccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc-----CCceEEEechHH----
Q 011553 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-----SATFLRVVGSEL---- 261 (483)
Q Consensus 191 ~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l-----~~~~~~v~~~~l---- 261 (483)
..+.|.++.+++|...+...+. -..+.+++|+||||||||++++.+++.+ +..+++++|...
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~---------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR---------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 4578999999999998854221 1234569999999999999999999876 467888888532
Q ss_pred ------HhhhcC-------Cc-hHHHHHHHHHHhh-cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCc
Q 011553 262 ------IQKYLG-------DG-PKLVRELFRVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD 326 (483)
Q Consensus 262 ------~~~~~g-------~~-~~~i~~~f~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~ 326 (483)
.....+ .. ...+..++..... ..+.||+|||+|.+.... .. ..+..++..++...
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-------~~---~~l~~l~~~~~~~~ 170 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-------GN---DVLYSLLRAHEEYP 170 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-------Cc---hHHHHHHHhhhccC
Confidence 122212 01 2223333333332 346799999999995111 11 23344443333221
Q ss_pred CCCCeEEEEEeCCCC---CCChhhcCCCccc-eEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHH
Q 011553 327 SRGDVKVILATNRIE---SLDPALLRPGRID-RKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIK 402 (483)
Q Consensus 327 ~~~~v~vI~ttn~~~---~ld~allr~gR~~-~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~ 402 (483)
..++.+|+++|..+ .+++.+.+ |+. ..|.|++++.++..+|++.++... +... .++
T Consensus 171 -~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~-~~~~-----------~~~----- 230 (394)
T PRK00411 171 -GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEG-FYPG-----------VVD----- 230 (394)
T ss_pred -CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhh-cccC-----------CCC-----
Confidence 23788999988753 46777766 663 578999999999999999877431 1110 000
Q ss_pred HHHHHHHHhhccccccccCCHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 011553 403 TRRRIFQIHTSRMTLADDVNLEEFVMTKDEF--SGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 403 ~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~--s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~ 470 (483)
+..++.++..+.+. ..+.+..+|..|+..|..++...|+.+|+..|+..+.
T Consensus 231 -----------------~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 231 -----------------DEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred -----------------HhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 11123333333221 2355667889999888888888999999999998873
No 85
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=9.4e-15 Score=157.28 Aligned_cols=186 Identities=17% Similarity=0.267 Sum_probs=130.3
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC-----------
Q 011553 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA----------- 251 (483)
Q Consensus 183 ~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~----------- 251 (483)
.++++.+|++++|.+.+++.|+..+... ..++.+||+||+|||||++|+.+|+.+.+
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 5678899999999999999999998751 34567999999999999999999998753
Q ss_pred -------------ceEEEechHHHhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHHHH
Q 011553 252 -------------TFLRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRT 314 (483)
Q Consensus 252 -------------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~ 314 (483)
.++.++++. +.+...++++...+... ...|++|||+|.| .......
T Consensus 76 C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L-----------t~~a~na 138 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML-----------STGAFNA 138 (559)
T ss_pred cHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHHHH
Confidence 223333211 12345567777665532 2459999999988 2233444
Q ss_pred HHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCccc-chHHHHhhc
Q 011553 315 MLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDV-NLEEFVMTK 393 (483)
Q Consensus 315 l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~-~l~~la~~t 393 (483)
|+..+ +. +...+++|++|+.++.+++.+++ |+. .+.|++|+.++...+++..+...++.-+. .+..++..+
T Consensus 139 LLKtL---Ee--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s 210 (559)
T PRK05563 139 LLKTL---EE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAA 210 (559)
T ss_pred HHHHh---cC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 44444 43 35678889889889999999998 985 78999999999999998877765543332 233444333
Q ss_pred cccchhhHHHHHHHHH
Q 011553 394 DEFSGADIKTRRRIFQ 409 (483)
Q Consensus 394 ~g~~~~~i~~~~r~~~ 409 (483)
.++++.+...+.
T Consensus 211 ----~G~~R~al~~Ld 222 (559)
T PRK05563 211 ----EGGMRDALSILD 222 (559)
T ss_pred ----CCCHHHHHHHHH
Confidence 344444444443
No 86
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.65 E-value=2.2e-14 Score=140.80 Aligned_cols=198 Identities=24% Similarity=0.281 Sum_probs=130.8
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEech------HHHhhhcCCchHHH-HH-------------------HHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGS------ELIQKYLGDGPKLV-RE-------------------LFR 278 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~------~l~~~~~g~~~~~i-~~-------------------~f~ 278 (483)
...+||+||||||||++|+++|..++.+|+.++|. ++++.+.+.....+ .. .+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 45699999999999999999999999999999764 44444433221111 11 111
Q ss_pred HHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc----CC-------cCCCCeEEEEEeCCCC-----C
Q 011553 279 VADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD----GF-------DSRGDVKVILATNRIE-----S 342 (483)
Q Consensus 279 ~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~----~~-------~~~~~v~vI~ttn~~~-----~ 342 (483)
.|.. .+.+|+||||+.+ +.+.+..|+.+|++-. +. ....++.||+|+|... .
T Consensus 101 ~A~~-~g~~lllDEi~r~-----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~ 168 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRS-----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHE 168 (262)
T ss_pred HHHH-cCCEEEEcchhhC-----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceec
Confidence 1111 3469999999987 6678889999886421 10 1224788999999752 5
Q ss_pred CChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCC
Q 011553 343 LDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVN 422 (483)
Q Consensus 343 ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~ 422 (483)
++++|++ || ..+.++.|+.++..+|+..++. ... ..+.++++.+...... ..
T Consensus 169 l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~----------------~~~~~iv~~~~~~R~~-----~~- 220 (262)
T TIGR02640 169 TQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAE----------------DSAATIVRLVREFRAS-----GD- 220 (262)
T ss_pred ccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCH----------------HHHHHHHHHHHHHHhh-----CC-
Confidence 6899999 98 5899999999999999998752 111 1222233333322200 10
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhh
Q 011553 423 LEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFK 472 (483)
Q Consensus 423 l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~ 472 (483)
....+.|....+++.+... ..+..++++||.+.+..++..
T Consensus 221 -------~~~~~~r~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 260 (262)
T TIGR02640 221 -------EITSGLRASLMIAEVATQQ---DIPVDVDDEDFVDLCIDILAS 260 (262)
T ss_pred -------ccCCcHHHHHHHHHHHHHc---CCCCCCCcHHHHHHHHHHhcc
Confidence 1133455555555555444 468899999999999888754
No 87
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.64 E-value=9.3e-15 Score=147.16 Aligned_cols=222 Identities=19% Similarity=0.257 Sum_probs=143.2
Q ss_pred cceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC-----Cc
Q 011553 178 SVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS-----AT 252 (483)
Q Consensus 178 ~~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~-----~~ 252 (483)
+.+|.+++.|.+|+|++|.+++++.+..++... ...+++|+||||||||++++++++++. .+
T Consensus 4 ~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~ 70 (319)
T PRK00440 4 EEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWREN 70 (319)
T ss_pred cCccchhhCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccc
Confidence 467899999999999999999999999988642 123589999999999999999999873 24
Q ss_pred eEEEechHHHhhhcCCchHHHHHHH-HHHhh-----cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCc
Q 011553 253 FLRVVGSELIQKYLGDGPKLVRELF-RVADD-----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD 326 (483)
Q Consensus 253 ~~~v~~~~l~~~~~g~~~~~i~~~f-~~a~~-----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~ 326 (483)
++.+++++.. ....+...+ ..+.. ..+.+|+|||+|.+ ..+.+..|..+++. .
T Consensus 71 ~i~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l-----------~~~~~~~L~~~le~---~- 129 (319)
T PRK00440 71 FLELNASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNL-----------TSDAQQALRRTMEM---Y- 129 (319)
T ss_pred eEEecccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccC-----------CHHHHHHHHHHHhc---C-
Confidence 5555443311 111222222 12211 23469999999988 22344556665543 2
Q ss_pred CCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCc-ccchHHHHhhccccchhhHHHHH
Q 011553 327 SRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD-DVNLEEFVMTKDEFSGADIKTRR 405 (483)
Q Consensus 327 ~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~t~g~~~~~i~~~~ 405 (483)
...+.+|+++|.+..+.+++.+ |+. .++|++++.++...+++.++......- +..+..++.. +.++++.+.
T Consensus 130 -~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~----~~gd~r~~~ 201 (319)
T PRK00440 130 -SQNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYV----SEGDMRKAI 201 (319)
T ss_pred -CCCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----cCCCHHHHH
Confidence 2346788888888888888888 886 799999999999999998887655432 2234444443 345666555
Q ss_pred HHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHH
Q 011553 406 RIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTE 444 (483)
Q Consensus 406 r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~ 444 (483)
..++..... ...+..+.+..........++..++..
T Consensus 202 ~~l~~~~~~---~~~it~~~v~~~~~~~~~~~i~~l~~~ 237 (319)
T PRK00440 202 NALQAAAAT---GKEVTEEAVYKITGTARPEEIREMIEL 237 (319)
T ss_pred HHHHHHHHc---CCCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence 555433221 123444444444444444555555443
No 88
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.64 E-value=3.7e-15 Score=145.98 Aligned_cols=153 Identities=28% Similarity=0.429 Sum_probs=113.4
Q ss_pred ccCCCCCcccccccHHHHHH---HHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc---eEEE
Q 011553 183 EKAPLESYADIGGLDAQIQE---IKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT---FLRV 256 (483)
Q Consensus 183 ~~~~~~~~~di~Gl~~~~~~---l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~---~~~v 256 (483)
+..++.+++|.+|++....+ |+.+++. ..-.+++||||||||||+||+.|++....+ |+.+
T Consensus 130 ermRPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrfvel 196 (554)
T KOG2028|consen 130 ERMRPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVEL 196 (554)
T ss_pred hhcCcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEE
Confidence 45677899999999876654 4444443 233469999999999999999999987665 6666
Q ss_pred echHHHhhhcCCchHHHHHHHHHHhhc-----CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCe
Q 011553 257 VGSELIQKYLGDGPKLVRELFRVADDL-----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDV 331 (483)
Q Consensus 257 ~~~~l~~~~~g~~~~~i~~~f~~a~~~-----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v 331 (483)
++.. .....++.+|+.+... ...|||||||+++ +...|.+++-.++ .+.|
T Consensus 197 SAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----------NksQQD~fLP~VE-------~G~I 251 (554)
T KOG2028|consen 197 SATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----------NKSQQDTFLPHVE-------NGDI 251 (554)
T ss_pred eccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----------hhhhhhcccceec-------cCce
Confidence 6543 3346688888887653 3569999999988 3334555554443 5789
Q ss_pred EEEEEe--CCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHc
Q 011553 332 KVILAT--NRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS 376 (483)
Q Consensus 332 ~vI~tt--n~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~ 376 (483)
++|++| |..-.++.+|++ |+ +++.+...+.+.-..|+.+.+.
T Consensus 252 ~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 252 TLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred EEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHH
Confidence 999988 556678999999 88 4888888888888888886443
No 89
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=1e-14 Score=161.96 Aligned_cols=164 Identities=18% Similarity=0.216 Sum_probs=121.5
Q ss_pred ecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc--------
Q 011553 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (483)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~-------- 252 (483)
..+++.+.+|++|+|.+.+++.|+.++.. -..++.+||+||+|||||++|++||+.+.+.
T Consensus 5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pC 72 (824)
T PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPC 72 (824)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCC
Confidence 34788999999999999999999999875 1345669999999999999999999998642
Q ss_pred ------------------eEEEechHHHhhhcCCchHHHHHHHHHHh----hcCCeEEEEcCCccccccccCCCCCChHH
Q 011553 253 ------------------FLRVVGSELIQKYLGDGPKLVRELFRVAD----DLSPSIVFIDEIDAVGTKRYDAHSGGERE 310 (483)
Q Consensus 253 ------------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~ 310 (483)
|+.+++.. ...-..++.+...+. .....|+||||+|.| +.+
T Consensus 73 g~C~sC~~~~~g~~~~~dv~eidaas------~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-----------t~~ 135 (824)
T PRK07764 73 GECDSCVALAPGGPGSLDVTEIDAAS------HGGVDDARELRERAFFAPAESRYKIFIIDEAHMV-----------TPQ 135 (824)
T ss_pred cccHHHHHHHcCCCCCCcEEEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEechhhc-----------CHH
Confidence 12222111 011233444433322 234469999999999 455
Q ss_pred HHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCC
Q 011553 311 IQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA 381 (483)
Q Consensus 311 ~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~ 381 (483)
.++.|+.+|++ ....++||++|+.++.|.+.|++ |+. ++.|..++.++...++...+....+.
T Consensus 136 a~NaLLK~LEE-----pP~~~~fIl~tt~~~kLl~TIrS--Rc~-~v~F~~l~~~~l~~~L~~il~~EGv~ 198 (824)
T PRK07764 136 GFNALLKIVEE-----PPEHLKFIFATTEPDKVIGTIRS--RTH-HYPFRLVPPEVMRGYLERICAQEGVP 198 (824)
T ss_pred HHHHHHHHHhC-----CCCCeEEEEEeCChhhhhHHHHh--hee-EEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 66677777764 24578899999988889999988 884 89999999999999998887665554
No 90
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.63 E-value=2.4e-15 Score=169.21 Aligned_cols=171 Identities=23% Similarity=0.342 Sum_probs=135.0
Q ss_pred cCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc----------CCce
Q 011553 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATF 253 (483)
Q Consensus 184 ~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l----------~~~~ 253 (483)
.+.+-.+++++|.+..++++.+.+.. ....+++|+||||||||++|+++|..+ +.++
T Consensus 171 ~~r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~ 237 (857)
T PRK10865 171 RAEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 237 (857)
T ss_pred HHhcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEE
Confidence 45567888999999998888887754 234569999999999999999999987 6788
Q ss_pred EEEechHHH--hhhcCCchHHHHHHHHHHhh-cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCC
Q 011553 254 LRVVGSELI--QKYLGDGPKLVRELFRVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD 330 (483)
Q Consensus 254 ~~v~~~~l~--~~~~g~~~~~i~~~f~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~ 330 (483)
+.++.+.+. .+|.|+.+..++.+|..+.. ..++||||||+|.+.+... +.+..+.+..|...+ .++.
T Consensus 238 ~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~---~~~~~d~~~~lkp~l-------~~g~ 307 (857)
T PRK10865 238 LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGK---ADGAMDAGNMLKPAL-------ARGE 307 (857)
T ss_pred EEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCC---CccchhHHHHhcchh-------hcCC
Confidence 888888876 46888889999999987543 5678999999999976542 223344555554444 3678
Q ss_pred eEEEEEeCCCC-----CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCC
Q 011553 331 VKVILATNRIE-----SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTL 380 (483)
Q Consensus 331 v~vI~ttn~~~-----~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~ 380 (483)
+.+|++|+..+ .+|+++.| ||+ .|.++.|+.+++..|++.....+..
T Consensus 308 l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~ 359 (857)
T PRK10865 308 LHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYEL 359 (857)
T ss_pred CeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhcc
Confidence 99999998865 48999999 997 6889999999999999877655443
No 91
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=9.3e-15 Score=156.81 Aligned_cols=220 Identities=17% Similarity=0.182 Sum_probs=142.7
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc----------
Q 011553 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT---------- 252 (483)
Q Consensus 183 ~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~---------- 252 (483)
+++++.+|++|+|++.+++.|+.++... ..++.+||+||+|||||++|+++|+.+.+.
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 5778899999999999999999998751 445668999999999999999999987642
Q ss_pred ----------------eEEEechHHHhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChHHHH
Q 011553 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (483)
Q Consensus 253 ----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 312 (483)
++.++++. ..+-..++++.+.+.. ....|++|||+|.| +...+
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L-----------t~~A~ 135 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-----------TTAGF 135 (584)
T ss_pred cHHHHHhhcccCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC-----------CHHHH
Confidence 22222211 0122344544444322 23459999999998 34455
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhh
Q 011553 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMT 392 (483)
Q Consensus 313 ~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~ 392 (483)
+.|+..|++ +...++||++|+.++.+.+++++ |+ ..+.|..++.++....+...+......-+.+...+...
T Consensus 136 NALLK~LEE-----pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~ 207 (584)
T PRK14952 136 NALLKIVEE-----PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIR 207 (584)
T ss_pred HHHHHHHhc-----CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666555553 35689999999999999999998 87 48999999999999888888776554333222222222
Q ss_pred ccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHH
Q 011553 393 KDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICT 443 (483)
Q Consensus 393 t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~ 443 (483)
++.++++.+...+....... -.+.+..+.+...........|..++.
T Consensus 208 ---~s~GdlR~aln~Ldql~~~~-~~~~It~~~v~~llg~~~~~~i~~lv~ 254 (584)
T PRK14952 208 ---AGGGSPRDTLSVLDQLLAGA-ADTHVTYQRALGLLGATDVALIDDAVD 254 (584)
T ss_pred ---HcCCCHHHHHHHHHHHHhcc-CCCCcCHHHHHHHHCCCCHHHHHHHHH
Confidence 33455555555544432111 022445555554443334444444444
No 92
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.63 E-value=1.1e-14 Score=160.10 Aligned_cols=155 Identities=24% Similarity=0.323 Sum_probs=113.1
Q ss_pred ecccCCCCCcccccccHHHHH---HHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEe
Q 011553 181 KVEKAPLESYADIGGLDAQIQ---EIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (483)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~~~---~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~ 257 (483)
..++.++.+++|++|.+..+. .+...+.. ....+++||||||||||++|+++|+.++.+|+.++
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln 84 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN 84 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence 456778899999999999885 46666543 22346999999999999999999999999999888
Q ss_pred chHHHhhhcCCchHHHHHHHHHHh-----hcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeE
Q 011553 258 GSELIQKYLGDGPKLVRELFRVAD-----DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVK 332 (483)
Q Consensus 258 ~~~l~~~~~g~~~~~i~~~f~~a~-----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~ 332 (483)
+.... ...++..+..+. .....+|||||||.+ +...+..|+..+. .+.++
T Consensus 85 a~~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-----------n~~qQdaLL~~lE-------~g~Ii 139 (725)
T PRK13341 85 AVLAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRF-----------NKAQQDALLPWVE-------NGTIT 139 (725)
T ss_pred hhhhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhC-----------CHHHHHHHHHHhc-------CceEE
Confidence 75321 122333333321 124569999999998 3444566665553 34677
Q ss_pred EEEEeCC--CCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHc
Q 011553 333 VILATNR--IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS 376 (483)
Q Consensus 333 vI~ttn~--~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~ 376 (483)
+|++|.. ...+++++++ |+ ..+.|++++.++...|++..+.
T Consensus 140 LI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 140 LIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred EEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHH
Confidence 7776633 3568899998 86 4799999999999999998776
No 93
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=5.6e-15 Score=157.92 Aligned_cols=163 Identities=21% Similarity=0.274 Sum_probs=119.9
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc---------
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT--------- 252 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~--------- 252 (483)
.+++++.+|++|+|.+.+++.|..++... ..++.+||+||||+|||++|+++|+.+++.
T Consensus 7 ~~k~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg 74 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCG 74 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 45678889999999999999999988752 345668999999999999999999988652
Q ss_pred ---------------eEEEechHHHhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHHH
Q 011553 253 ---------------FLRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQR 313 (483)
Q Consensus 253 ---------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 313 (483)
++.++++. ......++.+...+... ...|++|||+|.+ +.+.+.
T Consensus 75 ~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-----------s~~a~n 137 (527)
T PRK14969 75 VCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-----------SKSAFN 137 (527)
T ss_pred CCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC-----------CHHHHH
Confidence 12221110 11234566666665432 2359999999998 334445
Q ss_pred HHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCC
Q 011553 314 TMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA 381 (483)
Q Consensus 314 ~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~ 381 (483)
.|+..|++ +...++||++|+.++.+.+.+++ |+. .++|..++.++....+...+....+.
T Consensus 138 aLLK~LEe-----pp~~~~fIL~t~d~~kil~tI~S--Rc~-~~~f~~l~~~~i~~~L~~il~~egi~ 197 (527)
T PRK14969 138 AMLKTLEE-----PPEHVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPPPLIVSHLQHILEQENIP 197 (527)
T ss_pred HHHHHHhC-----CCCCEEEEEEeCChhhCchhHHH--HHH-HHhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 55555543 34678899999989999988988 884 99999999999998888777654443
No 94
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.1e-14 Score=154.97 Aligned_cols=188 Identities=18% Similarity=0.286 Sum_probs=129.7
Q ss_pred ecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC---------
Q 011553 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA--------- 251 (483)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~--------- 251 (483)
..+++++.+|++++|.+.+++.|...+... ..+..+||+||+|||||++|+++|+.+.+
T Consensus 6 La~KyRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pC 73 (546)
T PRK14957 6 LARKYRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPC 73 (546)
T ss_pred HHHHHCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 356778899999999999999999988751 34566899999999999999999998764
Q ss_pred ---------------ceEEEechHHHhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChHHHH
Q 011553 252 ---------------TFLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (483)
Q Consensus 252 ---------------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 312 (483)
.++.+++.. ..+...++.++..+.. ....|+||||+|.+ +...+
T Consensus 74 g~C~sC~~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----------s~~a~ 136 (546)
T PRK14957 74 NKCENCVAINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHML-----------SKQSF 136 (546)
T ss_pred cccHHHHHHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----------cHHHH
Confidence 222222211 0112334455544432 23469999999998 44556
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccc-hHHHHh
Q 011553 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVN-LEEFVM 391 (483)
Q Consensus 313 ~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~-l~~la~ 391 (483)
..|+..|++ +.+.++||++|+.+..+.+.+++ |+ ..++|..++.++....+...+...++..+.. +..++.
T Consensus 137 naLLK~LEe-----pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~ 208 (546)
T PRK14957 137 NALLKTLEE-----PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAY 208 (546)
T ss_pred HHHHHHHhc-----CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666666654 34678888888888889988988 88 5999999999998888887776554432222 333333
Q ss_pred hccccchhhHHHHHHHHH
Q 011553 392 TKDEFSGADIKTRRRIFQ 409 (483)
Q Consensus 392 ~t~g~~~~~i~~~~r~~~ 409 (483)
. +.++++.+...+.
T Consensus 209 ~----s~GdlR~alnlLe 222 (546)
T PRK14957 209 H----AKGSLRDALSLLD 222 (546)
T ss_pred H----cCCCHHHHHHHHH
Confidence 3 3345555544444
No 95
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.63 E-value=6.7e-15 Score=166.12 Aligned_cols=173 Identities=23% Similarity=0.320 Sum_probs=133.6
Q ss_pred cCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc----------CCce
Q 011553 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATF 253 (483)
Q Consensus 184 ~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l----------~~~~ 253 (483)
.+.+-.++.++|.+..++++.+.+.. ....+++|+||||||||++++++|..+ +.++
T Consensus 166 ~~~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~ 232 (852)
T TIGR03346 166 RAREGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRL 232 (852)
T ss_pred HhhCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeE
Confidence 45566788899999998888887754 234568999999999999999999975 5678
Q ss_pred EEEechHHH--hhhcCCchHHHHHHHHHHhhc-CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCC
Q 011553 254 LRVVGSELI--QKYLGDGPKLVRELFRVADDL-SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD 330 (483)
Q Consensus 254 ~~v~~~~l~--~~~~g~~~~~i~~~f~~a~~~-~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~ 330 (483)
+.++.+.+. .+|.|+.+..+..+|..+... .+.|||||||+.|..... +.+..+....|...+ .++.
T Consensus 233 ~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~---~~~~~d~~~~Lk~~l-------~~g~ 302 (852)
T TIGR03346 233 LALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGK---AEGAMDAGNMLKPAL-------ARGE 302 (852)
T ss_pred EEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCC---CcchhHHHHHhchhh-------hcCc
Confidence 888888775 468888888999999988653 588999999999975432 112233344333332 3678
Q ss_pred eEEEEEeCCC-----CCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCc
Q 011553 331 VKVILATNRI-----ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD 382 (483)
Q Consensus 331 v~vI~ttn~~-----~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~ 382 (483)
+.+|++|+.. ..+|+++.| ||. .|.++.|+.+++..|++.....+....
T Consensus 303 i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~ 356 (852)
T TIGR03346 303 LHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHH 356 (852)
T ss_pred eEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhcccc
Confidence 9999999875 357999999 997 689999999999999998776665443
No 96
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.62 E-value=1e-14 Score=148.38 Aligned_cols=179 Identities=26% Similarity=0.400 Sum_probs=127.9
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhC-CCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh-hhcC-C
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIG-IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-KYLG-D 268 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g-~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~-~~~g-~ 268 (483)
-|+|++++++.+..++........+...+. -..|+++||+||||||||++|+++|..++.+|+.++++.+.. .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 378999999999888775422222111111 234688999999999999999999999999999999887764 5777 4
Q ss_pred chHHHHHHHHHH--------------------------------------------------------------------
Q 011553 269 GPKLVRELFRVA-------------------------------------------------------------------- 280 (483)
Q Consensus 269 ~~~~i~~~f~~a-------------------------------------------------------------------- 280 (483)
.+..++.+|..|
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 455566555554
Q ss_pred -----------------------------------------------------------------------hhcCCeEEE
Q 011553 281 -----------------------------------------------------------------------DDLSPSIVF 289 (483)
Q Consensus 281 -----------------------------------------------------------------------~~~~p~Il~ 289 (483)
...+-+|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 001346999
Q ss_pred EcCCccccccccCC-CCCChHHHHHHHHHHHHhcc-----CCcCCCCeEEEEEeC----CCCCCChhhcCCCccceEEEc
Q 011553 290 IDEIDAVGTKRYDA-HSGGEREIQRTMLELLNQLD-----GFDSRGDVKVILATN----RIESLDPALLRPGRIDRKIEF 359 (483)
Q Consensus 290 iDEiD~l~~~r~~~-~~~~~~~~~~~l~~lL~~l~-----~~~~~~~v~vI~ttn----~~~~ld~allr~gR~~~~i~~ 359 (483)
|||||+++.+.... ..-+...+|+.|+.++.--. +.....+|+|||+.. .|++|-|.|.- ||+.++.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEEC
Confidence 99999999765221 12223457888887775210 122346899999873 46777888865 99999999
Q ss_pred CCCCHHHHHHHHH
Q 011553 360 PLPDIKTRRRIFQ 372 (483)
Q Consensus 360 ~~P~~~~r~~Il~ 372 (483)
..++.++...||.
T Consensus 331 ~~L~~edL~rILt 343 (441)
T TIGR00390 331 QALTTDDFERILT 343 (441)
T ss_pred CCCCHHHHHHHhc
Confidence 9999999998873
No 97
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.3e-14 Score=155.35 Aligned_cols=188 Identities=15% Similarity=0.225 Sum_probs=128.6
Q ss_pred ecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc--------
Q 011553 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (483)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~-------- 252 (483)
+.+++++.+|+||+|.+.+++.|..++..- ..+.++||+||+|||||++|+++|+.+.+.
T Consensus 6 la~KyRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pC 73 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPC 73 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCC
Confidence 456788999999999999999999988751 335679999999999999999999988652
Q ss_pred ----------------eEEEechHHHhhhcCCchHHHHHHHHHHh----hcCCeEEEEcCCccccccccCCCCCChHHHH
Q 011553 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVAD----DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (483)
Q Consensus 253 ----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 312 (483)
++.+++.. ...-..++.+.+.+. .....||||||+|.| +.+.+
T Consensus 74 g~C~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L-----------t~~a~ 136 (624)
T PRK14959 74 NTCEQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML-----------TREAF 136 (624)
T ss_pred cccHHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhC-----------CHHHH
Confidence 33333211 011223344333222 223469999999998 34445
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCccc-chHHHHh
Q 011553 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDV-NLEEFVM 391 (483)
Q Consensus 313 ~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~-~l~~la~ 391 (483)
..|+..|++ +...++||++|+.++.+.+.+++ |+. ++.|+.++.++...++...+....+.-+. .+..++.
T Consensus 137 naLLk~LEE-----P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~ 208 (624)
T PRK14959 137 NALLKTLEE-----PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIAR 208 (624)
T ss_pred HHHHHHhhc-----cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 555555543 24578899999998889989988 885 88999999999999888777655432222 2333333
Q ss_pred hccccchhhHHHHHHHHH
Q 011553 392 TKDEFSGADIKTRRRIFQ 409 (483)
Q Consensus 392 ~t~g~~~~~i~~~~r~~~ 409 (483)
++.++++.+...+.
T Consensus 209 ----~s~GdlR~Al~lLe 222 (624)
T PRK14959 209 ----RAAGSVRDSMSLLG 222 (624)
T ss_pred ----HcCCCHHHHHHHHH
Confidence 33455555444443
No 98
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.62 E-value=2.8e-14 Score=150.72 Aligned_cols=170 Identities=22% Similarity=0.338 Sum_probs=109.0
Q ss_pred CCCCcccc-cccHH--HHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc-----CCceEEEe
Q 011553 186 PLESYADI-GGLDA--QIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-----SATFLRVV 257 (483)
Q Consensus 186 ~~~~~~di-~Gl~~--~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l-----~~~~~~v~ 257 (483)
+..+|+++ +|-.. +...+..+...| + ....+++||||||||||+|++++++++ +..+++++
T Consensus 117 ~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 117 PKYTFDNFVVGKSNRLAHAAALAVAENP----------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCcccccccCCCcHHHHHHHHHHHhCc----------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 44567773 34332 455555554432 1 123459999999999999999999987 45688999
Q ss_pred chHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEe
Q 011553 258 GSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (483)
Q Consensus 258 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~tt 337 (483)
+.++...+..........-|.... ..+.+|+|||++.+..+ ...+..++.+++.+.. .+..+||.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~---------~~~~~~l~~~~n~l~~---~~~~iiits~ 252 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGK---------ERTQEEFFHTFNALHE---AGKQIVLTSD 252 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCC---------HHHHHHHHHHHHHHHH---CCCcEEEECC
Confidence 988876554332111111222211 24679999999988432 1245566666654422 2233444443
Q ss_pred CCCCC---CChhhcCCCccc--eEEEcCCCCHHHHHHHHHHHHcCCCCC
Q 011553 338 NRIES---LDPALLRPGRID--RKIEFPLPDIKTRRRIFQIHTSRMTLA 381 (483)
Q Consensus 338 n~~~~---ld~allr~gR~~--~~i~~~~P~~~~r~~Il~~~~~~~~~~ 381 (483)
..|.. +++.+.+ ||. ..+.|.+|+.++|..|++..+....+.
T Consensus 253 ~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~ 299 (450)
T PRK00149 253 RPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGID 299 (450)
T ss_pred CCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 44444 6688888 985 589999999999999999888765444
No 99
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.61 E-value=1.1e-14 Score=163.79 Aligned_cols=164 Identities=24% Similarity=0.319 Sum_probs=131.8
Q ss_pred CCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc----------CCceE
Q 011553 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATFL 254 (483)
Q Consensus 185 ~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l----------~~~~~ 254 (483)
+..-.++.++|.++.++++.+.+.. ...++++|+||||||||++|+++|..+ +..++
T Consensus 173 a~~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~ 239 (821)
T CHL00095 173 AIDGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVI 239 (821)
T ss_pred HHcCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 4455688899999999999998765 345679999999999999999999976 36899
Q ss_pred EEechHHH--hhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeE
Q 011553 255 RVVGSELI--QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVK 332 (483)
Q Consensus 255 ~v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~ 332 (483)
.++.+.+. .+|.|+.+..+..+|+.+....++||||||+|.+...... .+..+....|...+. ++.+.
T Consensus 240 ~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~---~g~~~~a~lLkp~l~-------rg~l~ 309 (821)
T CHL00095 240 TLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA---EGAIDAANILKPALA-------RGELQ 309 (821)
T ss_pred EeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC---CCcccHHHHhHHHHh-------CCCcE
Confidence 99998887 4788888999999999998778899999999999865431 222344455554443 57899
Q ss_pred EEEEeCCCC-----CCChhhcCCCccceEEEcCCCCHHHHHHHHHHH
Q 011553 333 VILATNRIE-----SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIH 374 (483)
Q Consensus 333 vI~ttn~~~-----~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~ 374 (483)
+|++|+..+ ..++++.+ ||. .|.++.|+.++...|++..
T Consensus 310 ~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 310 CIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGL 353 (821)
T ss_pred EEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHH
Confidence 999998753 47899999 996 6899999999998988754
No 100
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=2.3e-14 Score=151.75 Aligned_cols=220 Identities=15% Similarity=0.188 Sum_probs=146.6
Q ss_pred ecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC---------
Q 011553 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA--------- 251 (483)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~--------- 251 (483)
..+++++.+|++++|++.+++.|...+.. -..++.+|||||+|+|||++|+++|+.+.+
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC 71 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDN------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPC 71 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCC
Confidence 34678899999999999999999999865 144666899999999999999999998742
Q ss_pred ---------------ceEEEechHHHhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHH
Q 011553 252 ---------------TFLRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (483)
Q Consensus 252 ---------------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 312 (483)
.++.++++. ..+-..++++...+... ...|++|||+|.+ +.+.+
T Consensus 72 ~~C~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----------t~~A~ 134 (535)
T PRK08451 72 DTCIQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----------TKEAF 134 (535)
T ss_pred cccHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHH
Confidence 122222211 01134566665543321 2259999999998 45566
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcc-cchHHHHh
Q 011553 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADD-VNLEEFVM 391 (483)
Q Consensus 313 ~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~-~~l~~la~ 391 (483)
..|+..|.+ +...+.||++|+.+..+.+++++ |+. .++|.+++.++....+...+...+..-+ ..+..++.
T Consensus 135 NALLK~LEE-----pp~~t~FIL~ttd~~kL~~tI~S--Rc~-~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~ 206 (535)
T PRK08451 135 NALLKTLEE-----PPSYVKFILATTDPLKLPATILS--RTQ-HFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILAR 206 (535)
T ss_pred HHHHHHHhh-----cCCceEEEEEECChhhCchHHHh--hce-eEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 667666654 24568889999889999999999 974 9999999999988888877765544322 22444444
Q ss_pred hccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHH
Q 011553 392 TKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICT 443 (483)
Q Consensus 392 ~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~ 443 (483)
.+ .++++.+...+....... ...++.+.+...........+..++.
T Consensus 207 ~s----~GdlR~alnlLdqai~~~--~~~It~~~V~~~lg~~~~~~I~~li~ 252 (535)
T PRK08451 207 SG----NGSLRDTLTLLDQAIIYC--KNAITESKVADMLGLLDPSKLEDFFQ 252 (535)
T ss_pred Hc----CCcHHHHHHHHHHHHHhc--CCCCCHHHHHHHhCCCCHHHHHHHHH
Confidence 33 345555555443322110 22455566665554455556666655
No 101
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.61 E-value=3.7e-14 Score=147.86 Aligned_cols=211 Identities=20% Similarity=0.281 Sum_probs=124.7
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc-----CCceEEEechHHHhhhcCCchH-HHHHHHHHHhhcCCeEEEEcCCccccc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST-----SATFLRVVGSELIQKYLGDGPK-LVRELFRVADDLSPSIVFIDEIDAVGT 298 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l-----~~~~~~v~~~~l~~~~~g~~~~-~i~~~f~~a~~~~p~Il~iDEiD~l~~ 298 (483)
...++||||+|||||+|++++++++ +..++++++.++...+...... .+..+.... ..+.+|+|||++.+..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY--RSVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH--HhCCEEEEehhhhhcC
Confidence 3469999999999999999999976 5678899998876654322111 111222222 1357999999998843
Q ss_pred cccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeC-CCCC---CChhhcCCCccc--eEEEcCCCCHHHHHHHHH
Q 011553 299 KRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN-RIES---LDPALLRPGRID--RKIEFPLPDIKTRRRIFQ 372 (483)
Q Consensus 299 ~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn-~~~~---ld~allr~gR~~--~~i~~~~P~~~~r~~Il~ 372 (483)
+ ...+..++.+++.+.. .+.. +|+|+| .|.. +++.+.+ ||. ..+.|++|+.++|..|++
T Consensus 214 ~---------~~~~~~l~~~~n~~~~---~~~~-iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 214 K---------ERTQEEFFHTFNALHE---NGKQ-IVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred C---------HHHHHHHHHHHHHHHH---CCCC-EEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHH
Confidence 2 2345566666665422 2233 444554 4443 5688887 885 489999999999999999
Q ss_pred HHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 011553 373 IHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 452 (483)
Q Consensus 373 ~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~ 452 (483)
..+....+.-+.+...+......-+.+++..++..+..... . ....++-. +++++.......
T Consensus 279 ~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~-------------~-~~~~it~~----~~~~~L~~~~~~ 340 (405)
T TIGR00362 279 KKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYAS-------------L-TGKPITLE----LAKEALKDLLRA 340 (405)
T ss_pred HHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-------------H-hCCCCCHH----HHHHHHHHhccc
Confidence 88876655443333333323333334444444333322110 0 00112222 333343333333
Q ss_pred cCCCccHHHHHHHHHHHH
Q 011553 453 RRMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 453 ~~~~it~ed~~~Al~~~~ 470 (483)
....|+.+++.+++.+.-
T Consensus 341 ~~~~it~~~I~~~Va~~~ 358 (405)
T TIGR00362 341 KKKEITIENIQEVVAKYY 358 (405)
T ss_pred cCCCCCHHHHHHHHHHHc
Confidence 445688888888877654
No 102
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.60 E-value=2e-14 Score=144.91 Aligned_cols=255 Identities=21% Similarity=0.232 Sum_probs=153.4
Q ss_pred CcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC-------CceE-------
Q 011553 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS-------ATFL------- 254 (483)
Q Consensus 189 ~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~-------~~~~------- 254 (483)
.|+.|+|+++++..|.-.+..| ...+++|.|+||+|||+|+++++..+. .+|-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 3778999999999886666543 134699999999999999999998762 2221
Q ss_pred --EEechHHHh------------hhc----CCchHHH------HHHH-------HHH--hhcCCeEEEEcCCcccccccc
Q 011553 255 --RVVGSELIQ------------KYL----GDGPKLV------RELF-------RVA--DDLSPSIVFIDEIDAVGTKRY 301 (483)
Q Consensus 255 --~v~~~~l~~------------~~~----g~~~~~i------~~~f-------~~a--~~~~p~Il~iDEiD~l~~~r~ 301 (483)
..+|..... .++ |.++..+ ...+ ... .....++|||||++.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L----- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLL----- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhC-----
Confidence 111111000 000 0011111 1110 000 0122369999999998
Q ss_pred CCCCCChHHHHHHHHHHHHhc------cCCc--CCCCeEEEEEeCCCC-CCChhhcCCCccceEEEcCCCCH-HHHHHHH
Q 011553 302 DAHSGGEREIQRTMLELLNQL------DGFD--SRGDVKVILATNRIE-SLDPALLRPGRIDRKIEFPLPDI-KTRRRIF 371 (483)
Q Consensus 302 ~~~~~~~~~~~~~l~~lL~~l------~~~~--~~~~v~vI~ttn~~~-~ld~allr~gR~~~~i~~~~P~~-~~r~~Il 371 (483)
+...|..|++++.+- ++.. ...++++|+|+|..+ .++++|++ ||...+.++.|+. +++.+|+
T Consensus 144 ------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL 215 (337)
T TIGR02030 144 ------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIV 215 (337)
T ss_pred ------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHH
Confidence 567889999988642 1111 124688888888644 68999999 9999999998865 8899999
Q ss_pred HHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccC--CHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 011553 372 QIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDV--NLEEFVMTKDEFSGADIKAICTEAGLLA 449 (483)
Q Consensus 372 ~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~--~l~~la~~~~g~s~~di~~l~~~A~~~A 449 (483)
+....... ....+........-....+|..+...+ ....+.+.+ .+..++..+..-|.|.-..+++.|...|
T Consensus 216 ~~~~~~~~--~~~~~~~~~~~e~~~~~~~I~~a~~~~----~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~A 289 (337)
T TIGR02030 216 ERRTEYDA--DPHAFCEKWQTEQEALQAKIVNAQNLL----PQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALA 289 (337)
T ss_pred Hhhhhccc--CchhhhhhhhhhhhcCHHHHHHHHHHh----ccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHH
Confidence 87543210 000000001111112233333333222 222222111 1222333333335677778999999999
Q ss_pred HHhcCCCccHHHHHHHHHHHHhhccC
Q 011553 450 LRERRMKVTHTDFKKAKEKVMFKKKE 475 (483)
Q Consensus 450 ~~~~~~~it~ed~~~Al~~~~~~~~~ 475 (483)
+.+++..|+.+|+..+..-++.....
T Consensus 290 al~GR~~V~~dDv~~~a~~vL~HR~~ 315 (337)
T TIGR02030 290 AFEGRTEVTVDDIRRVAVLALRHRLR 315 (337)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999876654
No 103
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.60 E-value=8.3e-14 Score=142.54 Aligned_cols=164 Identities=18% Similarity=0.306 Sum_probs=119.5
Q ss_pred ecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc--------
Q 011553 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (483)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~-------- 252 (483)
+.+++++.+|++++|.+.+++.|.+.+... ..++.+|||||||+|||++|+++++.+...
T Consensus 4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c 71 (355)
T TIGR02397 4 LARKYRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPC 71 (355)
T ss_pred HHHHhCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 456778899999999999999999988651 345679999999999999999999987532
Q ss_pred ----------------eEEEechHHHhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHH
Q 011553 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (483)
Q Consensus 253 ----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 312 (483)
++.+++.. ......++.++..+... ...||+|||+|.+. ....
T Consensus 72 ~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~-----------~~~~ 134 (355)
T TIGR02397 72 NECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS-----------KSAF 134 (355)
T ss_pred CCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-----------HHHH
Confidence 23333221 11234566677665442 23599999999882 2233
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCC
Q 011553 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA 381 (483)
Q Consensus 313 ~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~ 381 (483)
..+ +..++. +..++++|++|+.++.+.+++.+ |+. .++|++|+.++...++..++......
T Consensus 135 ~~L---l~~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~ 195 (355)
T TIGR02397 135 NAL---LKTLEE--PPEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIK 195 (355)
T ss_pred HHH---HHHHhC--CccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 444 444433 24578888888888888899988 884 89999999999999999887765543
No 104
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=3.5e-14 Score=151.31 Aligned_cols=163 Identities=17% Similarity=0.243 Sum_probs=121.5
Q ss_pred eecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC--------
Q 011553 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA-------- 251 (483)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~-------- 251 (483)
.+.++++|.+|++++|.+.+++.+..++.. -..++++||+||+|+|||++|+++|+.+.+
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~ 72 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDC 72 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 467788999999999999999999998864 144577999999999999999999998753
Q ss_pred ----------------ceEEEechHHHhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHH
Q 011553 252 ----------------TFLRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREI 311 (483)
Q Consensus 252 ----------------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 311 (483)
.++.++++. ..+-..++.+...+... ...|++|||+|.| +...
T Consensus 73 Cg~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~L-----------t~~A 135 (605)
T PRK05896 73 CNSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHML-----------STSA 135 (605)
T ss_pred CcccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhC-----------CHHH
Confidence 122222211 01223456666554432 2359999999988 3334
Q ss_pred HHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCC
Q 011553 312 QRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT 379 (483)
Q Consensus 312 ~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~ 379 (483)
+..|+..|.+ +...+++|++|+.++.+.+++++ |+. .++|++|+.++...++...+...+
T Consensus 136 ~NaLLKtLEE-----Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~keg 195 (605)
T PRK05896 136 WNALLKTLEE-----PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEK 195 (605)
T ss_pred HHHHHHHHHh-----CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcC
Confidence 5566666653 34578899999889999999998 986 899999999999988887766544
No 105
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.60 E-value=2.1e-14 Score=155.20 Aligned_cols=165 Identities=21% Similarity=0.266 Sum_probs=113.7
Q ss_pred ccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC----------CceEEEechH
Q 011553 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS----------ATFLRVVGSE 260 (483)
Q Consensus 191 ~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~----------~~~~~v~~~~ 260 (483)
+.|.|.++.+++|..++...+. +..+...++|+|+||||||++++.++.++. ..+++++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 5688999999999998875322 112233357999999999999999987652 4678999854
Q ss_pred HHhh----------hcCC-------chHHHHHHHHHHhh--cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHh
Q 011553 261 LIQK----------YLGD-------GPKLVRELFRVADD--LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQ 321 (483)
Q Consensus 261 l~~~----------~~g~-------~~~~i~~~f~~a~~--~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ 321 (483)
+... ..+. ....+..+|..... ....||+|||||.|... .+..|..|++.
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR~ 895 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFDW 895 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHHHHHHHHH
Confidence 3211 1111 12345566665422 23569999999999532 24556666653
Q ss_pred ccCCcCCCCeEEEEEeCC---CCCCChhhcCCCccce-EEEcCCCCHHHHHHHHHHHHcCC
Q 011553 322 LDGFDSRGDVKVILATNR---IESLDPALLRPGRIDR-KIEFPLPDIKTRRRIFQIHTSRM 378 (483)
Q Consensus 322 l~~~~~~~~v~vI~ttn~---~~~ld~allr~gR~~~-~i~~~~P~~~~r~~Il~~~~~~~ 378 (483)
.. .....+.||+++|. ++.+++.+.+ |+.. .+.|++|+.+++.+||+..+...
T Consensus 896 ~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A 952 (1164)
T PTZ00112 896 PT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENC 952 (1164)
T ss_pred hh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhC
Confidence 32 13457999999986 5567788877 7653 58899999999999999887653
No 106
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.60 E-value=6.6e-15 Score=149.86 Aligned_cols=179 Identities=25% Similarity=0.382 Sum_probs=128.0
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhC-CCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh-hhcC-C
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIG-IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-KYLG-D 268 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g-~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~-~~~g-~ 268 (483)
.|+|++++++.+..++........+..... -..+.++||+||||||||++|+++|..++.+|+.++++.+.. .|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 378999999999888854322211111111 113578999999999999999999999999999999998875 5777 3
Q ss_pred chHHHHHHHHHHh-------------------------------------------------------------------
Q 011553 269 GPKLVRELFRVAD------------------------------------------------------------------- 281 (483)
Q Consensus 269 ~~~~i~~~f~~a~------------------------------------------------------------------- 281 (483)
.+..++.+|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4556666665550
Q ss_pred -----------------------------------------------------------------------hcCCeEEEE
Q 011553 282 -----------------------------------------------------------------------DLSPSIVFI 290 (483)
Q Consensus 282 -----------------------------------------------------------------------~~~p~Il~i 290 (483)
..+-+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013459999
Q ss_pred cCCccccccccCC-CCCChHHHHHHHHHHHHhcc-----CCcCCCCeEEEEEeC----CCCCCChhhcCCCccceEEEcC
Q 011553 291 DEIDAVGTKRYDA-HSGGEREIQRTMLELLNQLD-----GFDSRGDVKVILATN----RIESLDPALLRPGRIDRKIEFP 360 (483)
Q Consensus 291 DEiD~l~~~r~~~-~~~~~~~~~~~l~~lL~~l~-----~~~~~~~v~vI~ttn----~~~~ld~allr~gR~~~~i~~~ 360 (483)
||||+|+.+.... ..-+...+|+.|+.++.--. +.....+|+|||+.. .|++|-|.|.- ||+.++.+.
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~ 333 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELD 333 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECC
Confidence 9999998764321 12223457888887775210 122346899999873 36778888965 999999999
Q ss_pred CCCHHHHHHHHH
Q 011553 361 LPDIKTRRRIFQ 372 (483)
Q Consensus 361 ~P~~~~r~~Il~ 372 (483)
.++.++...||.
T Consensus 334 ~L~~~dL~~ILt 345 (443)
T PRK05201 334 ALTEEDFVRILT 345 (443)
T ss_pred CCCHHHHHHHhc
Confidence 999999998883
No 107
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.4e-14 Score=155.42 Aligned_cols=171 Identities=23% Similarity=0.316 Sum_probs=124.2
Q ss_pred eecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEE---E
Q 011553 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLR---V 256 (483)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~---v 256 (483)
.+.++++|.+|++|+|++.+++.|+..+... ..++.+||+||+|+|||++|+++|+.+.+.-.. -
T Consensus 7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~ 74 (725)
T PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLE 74 (725)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCC
Confidence 4567889999999999999999999998752 346678999999999999999999987653110 0
Q ss_pred echHHH---hh----h--cC---CchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHH
Q 011553 257 VGSELI---QK----Y--LG---DGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLN 320 (483)
Q Consensus 257 ~~~~l~---~~----~--~g---~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~ 320 (483)
.|.... +. + -+ .+...++.+.+.+... ...|++|||+|.| ....+..|+..|.
T Consensus 75 pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~L-----------T~~A~NALLKtLE 143 (725)
T PRK07133 75 PCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHML-----------SKSAFNALLKTLE 143 (725)
T ss_pred chhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhC-----------CHHHHHHHHHHhh
Confidence 111111 00 0 00 1234567777666543 3469999999988 3334555555554
Q ss_pred hccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCC
Q 011553 321 QLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA 381 (483)
Q Consensus 321 ~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~ 381 (483)
+ +...+++|++|+.++.+.+.+++ |+. ++.|.+|+.++...++...+....+.
T Consensus 144 E-----PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 144 E-----PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred c-----CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 3 35678899999999999999998 995 89999999999999888776655443
No 108
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.59 E-value=1.8e-14 Score=148.38 Aligned_cols=180 Identities=19% Similarity=0.277 Sum_probs=123.1
Q ss_pred CcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCce---------------
Q 011553 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATF--------------- 253 (483)
Q Consensus 189 ~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~--------------- 253 (483)
.|++|+|++.+++.|+.++..+... +...+...++++||+||||+|||++|+++|+.+.+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 5889999999999999999875432 2223344678899999999999999999999775431
Q ss_pred --------EEEechHHHhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHh
Q 011553 254 --------LRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQ 321 (483)
Q Consensus 254 --------~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ 321 (483)
..+.... ..-.-..++.+++.+... ...|+||||+|.+ +...+..|+..|++
T Consensus 80 ~~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m-----------~~~aanaLLk~LEe 143 (394)
T PRK07940 80 LAGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL-----------TERAANALLKAVEE 143 (394)
T ss_pred hcCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc-----------CHHHHHHHHHHhhc
Confidence 1111110 011234577777766542 2459999999999 44455666666653
Q ss_pred ccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchh
Q 011553 322 LDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGA 399 (483)
Q Consensus 322 l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~ 399 (483)
+..++++|++|+.++.+.|++++ |+ ..+.|++|+.++...++.... ... ......++..+.|....
T Consensus 144 -----p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~ 209 (394)
T PRK07940 144 -----PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGR 209 (394)
T ss_pred -----CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHH
Confidence 34567777777779999999999 98 499999999999887776322 222 22234455555555443
No 109
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.59 E-value=3.2e-14 Score=147.28 Aligned_cols=128 Identities=23% Similarity=0.359 Sum_probs=87.3
Q ss_pred ccccHHHHHHHHHHHhcCCCChhhhhh---hCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh-hhcCC
Q 011553 193 IGGLDAQIQEIKEAVELPLTHPELYED---IGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-KYLGD 268 (483)
Q Consensus 193 i~Gl~~~~~~l~e~i~~pl~~~~~~~~---~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~-~~~g~ 268 (483)
|+|++.+++.+..++..++..-..... -...+..++||+||||||||++|+++|..++.+|+.++++.+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 789999999998777432111100000 00123467999999999999999999999999999999988753 57776
Q ss_pred chH-HHHHHHHHH----hhcCCeEEEEcCCccccccccCC---CCCChHHHHHHHHHHHH
Q 011553 269 GPK-LVRELFRVA----DDLSPSIVFIDEIDAVGTKRYDA---HSGGEREIQRTMLELLN 320 (483)
Q Consensus 269 ~~~-~i~~~f~~a----~~~~p~Il~iDEiD~l~~~r~~~---~~~~~~~~~~~l~~lL~ 320 (483)
... .+..++..+ ....++||||||||.+..+.... ..-+....|+.|+++|+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Le 212 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILE 212 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHh
Confidence 433 344444432 23467899999999997653211 11112368899999996
No 110
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.8e-14 Score=149.93 Aligned_cols=171 Identities=19% Similarity=0.240 Sum_probs=119.3
Q ss_pred ecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc-------e
Q 011553 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------F 253 (483)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~-------~ 253 (483)
+..++++.+|++++|++.+++.|+..+.. -..++.+|||||+|+|||++|+++|..+++. +
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc 73 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPC 73 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCC
Confidence 45677889999999999999999999865 1345568999999999999999999987631 0
Q ss_pred E-EEechHHHhh----------hcCCchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHHHHHHHH
Q 011553 254 L-RVVGSELIQK----------YLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLEL 318 (483)
Q Consensus 254 ~-~v~~~~l~~~----------~~g~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l 318 (483)
- ..+|..+... ....+...++.+...+... ...|++|||+|.+ .......|+..
T Consensus 74 ~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~L-----------t~~a~naLLk~ 142 (486)
T PRK14953 74 GKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHML-----------TKEAFNALLKT 142 (486)
T ss_pred CccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhc-----------CHHHHHHHHHH
Confidence 0 0111111110 0011223455555554432 3469999999988 23344455555
Q ss_pred HHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCc
Q 011553 319 LNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD 382 (483)
Q Consensus 319 L~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~ 382 (483)
+. . +...+++|++|+.++.+.+++.+ |+. .+.|++|+.++...++..++...++.-
T Consensus 143 LE---e--pp~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~i 198 (486)
T PRK14953 143 LE---E--PPPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEY 198 (486)
T ss_pred Hh---c--CCCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 44 2 34567788888888889999988 885 899999999999999998887665543
No 111
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=8.4e-14 Score=150.57 Aligned_cols=176 Identities=19% Similarity=0.283 Sum_probs=127.0
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc---------
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT--------- 252 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~--------- 252 (483)
.+++++.+|+||+|++.+++.|..++.. -..++.+|||||+|+|||++|+++|+.+.+.
T Consensus 7 ~~k~RP~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~ 74 (576)
T PRK14965 7 ARKYRPQTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCN 74 (576)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCC
Confidence 4577889999999999999999998875 1446678999999999999999999987642
Q ss_pred ---------------eEEEechHHHhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHHH
Q 011553 253 ---------------FLRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQR 313 (483)
Q Consensus 253 ---------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 313 (483)
++.+++.. ......++.+...+... ...|++|||+|.| +...+.
T Consensus 75 ~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-----------t~~a~n 137 (576)
T PRK14965 75 VCPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML-----------STNAFN 137 (576)
T ss_pred ccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhC-----------CHHHHH
Confidence 22332211 11234566666555432 2359999999988 344556
Q ss_pred HHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCccc-chHHHHhh
Q 011553 314 TMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDV-NLEEFVMT 392 (483)
Q Consensus 314 ~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~-~l~~la~~ 392 (483)
.|+..|++ +...++||++|+.++.+.+.+++ |+. .++|..++.++....+...+...++.-+. .+..++..
T Consensus 138 aLLk~LEe-----pp~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~ 209 (576)
T PRK14965 138 ALLKTLEE-----PPPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARK 209 (576)
T ss_pred HHHHHHHc-----CCCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 66666653 35678999999999999999998 885 89999999999888888777665543222 24444444
Q ss_pred cc
Q 011553 393 KD 394 (483)
Q Consensus 393 t~ 394 (483)
+.
T Consensus 210 a~ 211 (576)
T PRK14965 210 GD 211 (576)
T ss_pred cC
Confidence 43
No 112
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.59 E-value=1.6e-13 Score=131.75 Aligned_cols=204 Identities=13% Similarity=0.169 Sum_probs=130.6
Q ss_pred cCCCCCccccc--ccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEec
Q 011553 184 KAPLESYADIG--GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVG 258 (483)
Q Consensus 184 ~~~~~~~~di~--Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~ 258 (483)
..++.+|+++. +.+.++..+..+... .....+++|+||+|||||+||++++++. +..++.+++
T Consensus 11 ~~~~~~~d~f~~~~~~~~~~~l~~~~~~------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 11 PPPPPTFDNFVAGENAELVARLRELAAG------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCChhhhcccccCCcHHHHHHHHHHHhc------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 34456677754 445666666665541 2345679999999999999999999875 568888888
Q ss_pred hHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeC
Q 011553 259 SELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (483)
Q Consensus 259 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn 338 (483)
..+.... . ......+|+|||+|.+. ...+..+..+++.... .+..++|++++
T Consensus 79 ~~~~~~~------------~--~~~~~~~liiDdi~~l~-----------~~~~~~L~~~~~~~~~---~~~~~vl~~~~ 130 (227)
T PRK08903 79 ASPLLAF------------D--FDPEAELYAVDDVERLD-----------DAQQIALFNLFNRVRA---HGQGALLVAGP 130 (227)
T ss_pred HHhHHHH------------h--hcccCCEEEEeChhhcC-----------chHHHHHHHHHHHHHH---cCCcEEEEeCC
Confidence 7764321 1 11234699999999872 2345666777765432 23434555554
Q ss_pred CCC---CCChhhcCCCcc--ceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhc
Q 011553 339 RIE---SLDPALLRPGRI--DRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTS 413 (483)
Q Consensus 339 ~~~---~ld~allr~gR~--~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~ 413 (483)
.+. .+.+.|.+ || ...+.+++|+.+++..++........+.-+
T Consensus 131 ~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~------------------------------ 178 (227)
T PRK08903 131 AAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLA------------------------------ 178 (227)
T ss_pred CCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCC------------------------------
Confidence 322 34577777 77 469999999999888888866544332221
Q ss_pred cccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 011553 414 RMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKE 467 (483)
Q Consensus 414 ~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~ 467 (483)
...+..++..+.| +.+++..+++.-...|...+ ..||...+++++.
T Consensus 179 ------~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 179 ------DEVPDYLLTHFRR-DMPSLMALLDALDRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred ------HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 1123444443333 56778888877555554433 6888888888764
No 113
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.2e-14 Score=146.45 Aligned_cols=195 Identities=17% Similarity=0.229 Sum_probs=129.2
Q ss_pred eecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEech
Q 011553 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGS 259 (483)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~ 259 (483)
.+.+++++.+|++++|.+.+++.+...+... ..+.++|||||||+|||++|+++|+.+..+.....+.
T Consensus 6 ~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~ 73 (367)
T PRK14970 6 VSARKYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNE 73 (367)
T ss_pred HHHHHHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 3567889999999999999999999998752 3456799999999999999999999876421110000
Q ss_pred HH------HhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCC
Q 011553 260 EL------IQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRG 329 (483)
Q Consensus 260 ~l------~~~~~g~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~ 329 (483)
.+ ...........++.++..+... .+.||+|||+|.+. ......++..+ +. +..
T Consensus 74 ~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-----------~~~~~~ll~~l---e~--~~~ 137 (367)
T PRK14970 74 DFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-----------SAAFNAFLKTL---EE--PPA 137 (367)
T ss_pred CCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-----------HHHHHHHHHHH---hC--CCC
Confidence 00 0000112235566667655432 34699999999882 22334444444 33 234
Q ss_pred CeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCc-ccchHHHHhhccccchhhHHHHHHHH
Q 011553 330 DVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD-DVNLEEFVMTKDEFSGADIKTRRRIF 408 (483)
Q Consensus 330 ~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~t~g~~~~~i~~~~r~~ 408 (483)
.+++|++|+.+..+.+++.+ |+. .++|+.|+.++...++...+...++.- +..+..++.. +++++..+...+
T Consensus 138 ~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~----~~gdlr~~~~~l 210 (367)
T PRK14970 138 HAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQK----ADGALRDALSIF 210 (367)
T ss_pred ceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCHHHHHHHH
Confidence 57778888888889999988 875 799999999999988887776655432 2234444433 334555554444
Q ss_pred H
Q 011553 409 Q 409 (483)
Q Consensus 409 ~ 409 (483)
.
T Consensus 211 e 211 (367)
T PRK14970 211 D 211 (367)
T ss_pred H
Confidence 4
No 114
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=6.2e-14 Score=151.20 Aligned_cols=171 Identities=18% Similarity=0.220 Sum_probs=124.2
Q ss_pred ecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEE----
Q 011553 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRV---- 256 (483)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v---- 256 (483)
...++.+.+|+||+|++.+++.|..++.. -..+.++||+||+|+|||++|+++|+.+.+.....
T Consensus 14 la~KyRP~~f~dliGq~~~v~~L~~~~~~------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~ 81 (598)
T PRK09111 14 LARKYRPQTFDDLIGQEAMVRTLTNAFET------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGP 81 (598)
T ss_pred HHhhhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCC
Confidence 45678899999999999999999998875 24567899999999999999999999887532111
Q ss_pred ---------echHHHhhh----------cCCchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHHH
Q 011553 257 ---------VGSELIQKY----------LGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQR 313 (483)
Q Consensus 257 ---------~~~~l~~~~----------~g~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 313 (483)
+|..+.... -..+-..++.+++.+... ...||+|||+|.| +.....
T Consensus 82 ~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L-----------s~~a~n 150 (598)
T PRK09111 82 TIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML-----------STAAFN 150 (598)
T ss_pred ccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC-----------CHHHHH
Confidence 111111100 001234567776666433 2469999999998 334455
Q ss_pred HHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCc
Q 011553 314 TMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD 382 (483)
Q Consensus 314 ~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~ 382 (483)
.|+..|++ +...++||++|+.++.+.+.+++ |+. .+.|..|+.++...++...+......-
T Consensus 151 aLLKtLEe-----Pp~~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i 211 (598)
T PRK09111 151 ALLKTLEE-----PPPHVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEV 211 (598)
T ss_pred HHHHHHHh-----CCCCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 55555543 34578888999888889999988 885 899999999999999988776655443
No 115
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=7.2e-14 Score=146.86 Aligned_cols=188 Identities=20% Similarity=0.305 Sum_probs=128.1
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc---------
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT--------- 252 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~--------- 252 (483)
.+++++.+|+||+|.+.++..|...+... ..+.++|||||||+|||++|+++|+.+.+.
T Consensus 8 ~~kyRP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c 75 (451)
T PRK06305 8 SRKYRPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPC 75 (451)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCC
Confidence 45678899999999999999999988751 346679999999999999999999987542
Q ss_pred ----------------eEEEechHHHhhhcCCchHHHHHHHHHHh----hcCCeEEEEcCCccccccccCCCCCChHHHH
Q 011553 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVAD----DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (483)
Q Consensus 253 ----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 312 (483)
++.+++... .+-..++.+.+... .....||+|||+|.+ ..+.+
T Consensus 76 ~~c~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~l-----------t~~~~ 138 (451)
T PRK06305 76 NQCASCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHML-----------TKEAF 138 (451)
T ss_pred cccHHHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhh-----------CHHHH
Confidence 222322110 11133443333222 134579999999988 33344
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcc-cchHHHHh
Q 011553 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADD-VNLEEFVM 391 (483)
Q Consensus 313 ~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~-~~l~~la~ 391 (483)
..|+..+++ +.+.+++|++|+.+..+.+++.+ |+. .++|+.++.++...++...+...+..-+ ..+..++.
T Consensus 139 n~LLk~lEe-----p~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~ 210 (451)
T PRK06305 139 NSLLKTLEE-----PPQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIAR 210 (451)
T ss_pred HHHHHHhhc-----CCCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 555555543 34578888888888899999998 885 8999999999999888877665544322 22344443
Q ss_pred hccccchhhHHHHHHHHHH
Q 011553 392 TKDEFSGADIKTRRRIFQI 410 (483)
Q Consensus 392 ~t~g~~~~~i~~~~r~~~~ 410 (483)
.+ .+++..+...++.
T Consensus 211 ~s----~gdlr~a~~~Lek 225 (451)
T PRK06305 211 AA----QGSLRDAESLYDY 225 (451)
T ss_pred Hc----CCCHHHHHHHHHH
Confidence 33 4555555555443
No 116
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.58 E-value=1e-13 Score=132.67 Aligned_cols=203 Identities=18% Similarity=0.261 Sum_probs=133.0
Q ss_pred CCccccc--ccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHH
Q 011553 188 ESYADIG--GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELI 262 (483)
Q Consensus 188 ~~~~di~--Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~ 262 (483)
.+|++++ +....+..++.++.. ..+.+++|+||+|||||++|+++++.+ +.++++++|+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 3444543 567788888887542 335679999999999999999999876 4688899998886
Q ss_pred hhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC-CC
Q 011553 263 QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR-IE 341 (483)
Q Consensus 263 ~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~-~~ 341 (483)
... ..++.... .+.+|+|||+|.+... .+.+..+..+++.+.. .+ ..+|+|++. +.
T Consensus 79 ~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~---------~~~~~~L~~~l~~~~~---~~-~~iIits~~~~~ 135 (226)
T TIGR03420 79 QAD--------PEVLEGLE--QADLVCLDDVEAIAGQ---------PEWQEALFHLYNRVRE---AG-GRLLIAGRAAPA 135 (226)
T ss_pred HhH--------HHHHhhcc--cCCEEEEeChhhhcCC---------hHHHHHHHHHHHHHHH---cC-CeEEEECCCChH
Confidence 432 22332222 2359999999988321 1235566666665432 12 245666653 33
Q ss_pred CC--C-hhhcCCCcc--ceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhcccc
Q 011553 342 SL--D-PALLRPGRI--DRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMT 416 (483)
Q Consensus 342 ~l--d-~allr~gR~--~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~ 416 (483)
.+ . +.|.+ |+ ...+.+|+|+.+++..+++.+.....+.-+
T Consensus 136 ~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--------------------------------- 180 (226)
T TIGR03420 136 QLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLP--------------------------------- 180 (226)
T ss_pred HCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCC---------------------------------
Confidence 32 2 67777 76 468999999999999999876654332211
Q ss_pred ccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 011553 417 LADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAK 466 (483)
Q Consensus 417 ~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al 466 (483)
...+..++.. -+-+.+++.++++.+...+..++ ..|+.+.+.+++
T Consensus 181 ---~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 181 ---DEVADYLLRH-GSRDMGSLMALLDALDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred ---HHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHh
Confidence 1223445553 34467889999888776655544 469988887765
No 117
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.57 E-value=1.5e-13 Score=149.56 Aligned_cols=167 Identities=26% Similarity=0.386 Sum_probs=115.9
Q ss_pred CCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc----------CCceE
Q 011553 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATFL 254 (483)
Q Consensus 185 ~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l----------~~~~~ 254 (483)
.++.+|++++|.+..++.+...+.. ..+.+++|+||||||||++|+++++.. +.+|+
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 4577899999999999998777653 234569999999999999999998765 35799
Q ss_pred EEechHHH-------hhhcCCchHHH----HHHHHH----------HhhcCCeEEEEcCCccccccccCCCCCChHHHHH
Q 011553 255 RVVGSELI-------QKYLGDGPKLV----RELFRV----------ADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQR 313 (483)
Q Consensus 255 ~v~~~~l~-------~~~~g~~~~~i----~~~f~~----------a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~ 313 (483)
.++|..+. ....+...... ...+.. ......++|||||++.| +...+.
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----------d~~~Q~ 283 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----------DPLLQN 283 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----------CHHHHH
Confidence 99987652 11222211110 001110 01123469999999988 566788
Q ss_pred HHHHHHHhccC------C-----------------cCCCCeEEEEEe-CCCCCCChhhcCCCccceEEEcCCCCHHHHHH
Q 011553 314 TMLELLNQLDG------F-----------------DSRGDVKVILAT-NRIESLDPALLRPGRIDRKIEFPLPDIKTRRR 369 (483)
Q Consensus 314 ~l~~lL~~l~~------~-----------------~~~~~v~vI~tt-n~~~~ld~allr~gR~~~~i~~~~P~~~~r~~ 369 (483)
.|+.+++.-.. + ....++++|++| +.++.++++|++ ||. .+.|++++.++...
T Consensus 284 ~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~ 360 (615)
T TIGR02903 284 KLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHH
Confidence 88888864210 0 012246666655 568889999988 996 77899999999999
Q ss_pred HHHHHHcCC
Q 011553 370 IFQIHTSRM 378 (483)
Q Consensus 370 Il~~~~~~~ 378 (483)
|++..+...
T Consensus 361 Il~~~a~~~ 369 (615)
T TIGR02903 361 IVLNAAEKI 369 (615)
T ss_pred HHHHHHHHc
Confidence 999877654
No 118
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.57 E-value=2.9e-14 Score=157.38 Aligned_cols=165 Identities=21% Similarity=0.332 Sum_probs=121.6
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhCC----CCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh----
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGI----KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ---- 263 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~----~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~---- 263 (483)
.|+|++++++.|.+.+.... .|+ ++..++||+||||||||++|+++|..++.+|++++++++..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~--------~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~ 530 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHh--------ccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccH
Confidence 47999999999999887521 122 22345999999999999999999999999999999988743
Q ss_pred -hhcCCchHHH-----HHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCc------CCCCe
Q 011553 264 -KYLGDGPKLV-----RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD------SRGDV 331 (483)
Q Consensus 264 -~~~g~~~~~i-----~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~------~~~~v 331 (483)
..+|..+..+ ..+....+....+||||||||++ +.+++..|+++|+.-.-.. .-.++
T Consensus 531 ~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~ 599 (758)
T PRK11034 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNLLLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_pred HHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh-----------hHHHHHHHHHHHhcCeeecCCCceecCCCc
Confidence 3344332221 12333334455689999999998 6678899999987421111 12478
Q ss_pred EEEEEeCCC-------------------------CCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcC
Q 011553 332 KVILATNRI-------------------------ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR 377 (483)
Q Consensus 332 ~vI~ttn~~-------------------------~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~ 377 (483)
+||+|||.- ..+.|.|+. |++.+|.|++.+.++...|+...+..
T Consensus 600 iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 600 VLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred EEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 899999932 125678888 99999999999999999999876643
No 119
>PRK06893 DNA replication initiation factor; Validated
Probab=99.57 E-value=1e-13 Score=133.30 Aligned_cols=181 Identities=16% Similarity=0.158 Sum_probs=110.0
Q ss_pred CceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccC
Q 011553 226 KGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYD 302 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~ 302 (483)
..++||||||||||+|++++|+++ +....+++...... ....++... ....+|+|||++.+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~~--~~~dlLilDDi~~~~~---- 105 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--------FSPAVLENL--EQQDLVCLDDLQAVIG---- 105 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh--------hhHHHHhhc--ccCCEEEEeChhhhcC----
Confidence 358999999999999999999985 23444444432111 011222222 2347999999998842
Q ss_pred CCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEe-CCCCCCC---hhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCC
Q 011553 303 AHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT-NRIESLD---PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM 378 (483)
Q Consensus 303 ~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~tt-n~~~~ld---~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~ 378 (483)
..+.+..+..+++.+.. .+..++|.|+ ..|..++ +.|.+..+++..+.++.|+.+++..|++..+...
T Consensus 106 -----~~~~~~~l~~l~n~~~~---~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~ 177 (229)
T PRK06893 106 -----NEEWELAIFDLFNRIKE---QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR 177 (229)
T ss_pred -----ChHHHHHHHHHHHHHHH---cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc
Confidence 22345567777775432 2334444544 4466554 8888833335689999999999999999777544
Q ss_pred CCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCcc
Q 011553 379 TLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 458 (483)
Q Consensus 379 ~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it 458 (483)
.+.-+ +.....++....+ +.+.+..++...-..++.+++ .||
T Consensus 178 ~l~l~------------------------------------~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~~-~it 219 (229)
T PRK06893 178 GIELS------------------------------------DEVANFLLKRLDR-DMHTLFDALDLLDKASLQAQR-KLT 219 (229)
T ss_pred CCCCC------------------------------------HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhcCC-CCC
Confidence 33221 1123344444433 345566655554333443344 689
Q ss_pred HHHHHHHH
Q 011553 459 HTDFKKAK 466 (483)
Q Consensus 459 ~ed~~~Al 466 (483)
...+++++
T Consensus 220 ~~~v~~~L 227 (229)
T PRK06893 220 IPFVKEIL 227 (229)
T ss_pred HHHHHHHh
Confidence 88888775
No 120
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=9.1e-14 Score=144.35 Aligned_cols=167 Identities=16% Similarity=0.195 Sum_probs=114.4
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCce-E------
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATF-L------ 254 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~-~------ 254 (483)
.+++++.+|++|+|++.+++.|..++.. -..+.++||+||||+|||++|+++|+.+.+.- .
T Consensus 7 ~~k~RP~~~~eiiGq~~~~~~L~~~~~~------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~ 74 (397)
T PRK14955 7 ARKYRPKKFADITAQEHITRTIQNSLRM------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL 74 (397)
T ss_pred HHhcCCCcHhhccChHHHHHHHHHHHHh------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc
Confidence 4577889999999999999999998875 24567799999999999999999999886521 0
Q ss_pred ---EEec------hHHHh-------hhcC---CchHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChHHH
Q 011553 255 ---RVVG------SELIQ-------KYLG---DGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREI 311 (483)
Q Consensus 255 ---~v~~------~~l~~-------~~~g---~~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 311 (483)
.-.| ..+.. .+-+ .....++++.+.+.. ....|+||||+|.+ +.+.
T Consensus 75 ~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l-----------~~~~ 143 (397)
T PRK14955 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHML-----------SIAA 143 (397)
T ss_pred ccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhC-----------CHHH
Confidence 0001 11100 0011 113445555544422 12359999999998 2233
Q ss_pred HHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCC
Q 011553 312 QRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT 379 (483)
Q Consensus 312 ~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~ 379 (483)
+..|+..++ . +...+++|++|+.+..+.+++.+ |+. .++|++++.++....+...+....
T Consensus 144 ~~~LLk~LE---e--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g 203 (397)
T PRK14955 144 FNAFLKTLE---E--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEG 203 (397)
T ss_pred HHHHHHHHh---c--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcC
Confidence 444554444 2 34567778888778888888988 886 899999999998888887765544
No 121
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.56 E-value=2.3e-13 Score=145.21 Aligned_cols=162 Identities=20% Similarity=0.325 Sum_probs=108.7
Q ss_pred CceEEEcCCCCchHHHHHHHHHHc-----CCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccc
Q 011553 226 KGVILYGEPGTGKTLLAKAVANST-----SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 300 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l-----~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r 300 (483)
+.++|||++|||||+|++|||+++ +..++++++.++...+...........|... ...+++|+||||+.+..+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gk- 392 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDK- 392 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCC-
Confidence 349999999999999999999976 4578899998888766533222112223322 234689999999988532
Q ss_pred cCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCC----CCCChhhcCCCcc--ceEEEcCCCCHHHHHHHHHHH
Q 011553 301 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI----ESLDPALLRPGRI--DRKIEFPLPDIKTRRRIFQIH 374 (483)
Q Consensus 301 ~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~----~~ld~allr~gR~--~~~i~~~~P~~~~r~~Il~~~ 374 (483)
...+..|+.+++.+.. .+ ..+|+|||.+ ..+++.|.+ || ..++.+..|+.+.|..||+.+
T Consensus 393 --------e~tqeeLF~l~N~l~e---~g-k~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 393 --------ESTQEEFFHTFNTLHN---AN-KQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred --------HHHHHHHHHHHHHHHh---cC-CCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHH
Confidence 2345667777776532 12 2355677653 357788988 88 458899999999999999988
Q ss_pred HcCCCCCcccchHHHHhhccccchhhHHH
Q 011553 375 TSRMTLADDVNLEEFVMTKDEFSGADIKT 403 (483)
Q Consensus 375 ~~~~~~~~~~~l~~la~~t~g~~~~~i~~ 403 (483)
+....+.-..++..+......-+.+.|..
T Consensus 459 a~~r~l~l~~eVi~yLa~r~~rnvR~Leg 487 (617)
T PRK14086 459 AVQEQLNAPPEVLEFIASRISRNIRELEG 487 (617)
T ss_pred HHhcCCCCCHHHHHHHHHhccCCHHHHHH
Confidence 87766655545444443333333334433
No 122
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=2.4e-13 Score=146.08 Aligned_cols=181 Identities=17% Similarity=0.203 Sum_probs=122.6
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc-------eE
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------FL 254 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~-------~~ 254 (483)
..+++|.+|+||+|++.+++.|...+... ..++.+|||||+|+|||++|+++|+.+.+. .-
T Consensus 7 ~~kyRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~ 74 (563)
T PRK06647 7 ATKRRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG 74 (563)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc
Confidence 45678899999999999999999998751 345679999999999999999999988642 00
Q ss_pred E-EechHHHhh-------hcC---CchHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHH
Q 011553 255 R-VVGSELIQK-------YLG---DGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELL 319 (483)
Q Consensus 255 ~-v~~~~l~~~-------~~g---~~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL 319 (483)
. .+|-.+... .-| ..-..++++.+.+.. ....|++|||+|.+ +...+..|+..
T Consensus 75 ~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-----------s~~a~naLLK~- 142 (563)
T PRK06647 75 ECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML-----------SNSAFNALLKT- 142 (563)
T ss_pred cchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-----------CHHHHHHHHHh-
Confidence 0 011111100 011 122345555543332 23469999999988 33334444444
Q ss_pred HhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccc-hHHHHhhc
Q 011553 320 NQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVN-LEEFVMTK 393 (483)
Q Consensus 320 ~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~-l~~la~~t 393 (483)
++. +...+++|++|+.+..+.+++++ |+. .++|.+++.++...+++..+....+.-+.+ +..++..+
T Consensus 143 --LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s 210 (563)
T PRK06647 143 --IEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKS 210 (563)
T ss_pred --hcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 443 35678899999888899999998 986 799999999999998887776555442222 44444433
No 123
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.55 E-value=5.6e-13 Score=128.73 Aligned_cols=209 Identities=15% Similarity=0.162 Sum_probs=127.2
Q ss_pred cCCCCCccccc--ccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEec
Q 011553 184 KAPLESYADIG--GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVG 258 (483)
Q Consensus 184 ~~~~~~~~di~--Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~ 258 (483)
-.+..+|++.+ +...++..+...... .....++||||||||||+|++++|+++. ....+++.
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 34455677655 455566666665543 1234699999999999999999998764 33455555
Q ss_pred hHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeC
Q 011553 259 SELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (483)
Q Consensus 259 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn 338 (483)
...... ...+++.... ..+|+|||++.+.. ....+..+..+++.+.. .+++.+|+||+
T Consensus 82 ~~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~---------~~~~~~~lf~l~n~~~e---~g~~~li~ts~ 139 (235)
T PRK08084 82 DKRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAG---------DELWEMAIFDLYNRILE---SGRTRLLITGD 139 (235)
T ss_pred HHHhhh--------hHHHHHHhhh--CCEEEEeChhhhcC---------CHHHHHHHHHHHHHHHH---cCCCeEEEeCC
Confidence 443211 1111222111 25899999998832 23455666666665421 34445666665
Q ss_pred C-CCC---CChhhcCCCccc--eEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhh
Q 011553 339 R-IES---LDPALLRPGRID--RKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHT 412 (483)
Q Consensus 339 ~-~~~---ld~allr~gR~~--~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~ 412 (483)
. |.. +.|.|++ |+. .++.+.+|+.+++.++++.......+.-+
T Consensus 140 ~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~----------------------------- 188 (235)
T PRK08084 140 RPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP----------------------------- 188 (235)
T ss_pred CChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC-----------------------------
Confidence 4 444 5799998 885 69999999999999999876554333221
Q ss_pred ccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 011553 413 SRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKE 467 (483)
Q Consensus 413 ~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~ 467 (483)
+...+.++....+ +.+.+..++...-..++.+ ...||.+.+++++.
T Consensus 189 -------~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~-~~~it~~~~k~~l~ 234 (235)
T PRK08084 189 -------EDVGRFLLKRLDR-EMRTLFMTLDQLDRASITA-QRKLTIPFVKEILK 234 (235)
T ss_pred -------HHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHc
Confidence 1223344444433 4566666666644344333 34588888877753
No 124
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.54 E-value=2.7e-13 Score=125.85 Aligned_cols=221 Identities=20% Similarity=0.242 Sum_probs=149.8
Q ss_pred ceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC-----ce
Q 011553 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA-----TF 253 (483)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~-----~~ 253 (483)
..|++++.+..+.||+|.++.+.++.-..... . -.+++|.||||||||+-+.++|+++-. .+
T Consensus 15 l~wVeKYrP~~l~dIVGNe~tv~rl~via~~g------------n-mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~v 81 (333)
T KOG0991|consen 15 LPWVEKYRPSVLQDIVGNEDTVERLSVIAKEG------------N-MPNLIISGPPGTGKTTSILCLARELLGDSYKEAV 81 (333)
T ss_pred chHHHhhCchHHHHhhCCHHHHHHHHHHHHcC------------C-CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHh
Confidence 34899999999999999999999998876541 1 235999999999999999999998632 34
Q ss_pred EEEechHHHhhhcCCchHHHHH---HHHHHhhc-CC---eEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCc
Q 011553 254 LRVVGSELIQKYLGDGPKLVRE---LFRVADDL-SP---SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD 326 (483)
Q Consensus 254 ~~v~~~~l~~~~~g~~~~~i~~---~f~~a~~~-~p---~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~ 326 (483)
+++++++-. +-..++. .|.+-+-. .| .||++||+|.+ ....|++|...++..
T Consensus 82 LELNASdeR------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM-----------T~gAQQAlRRtMEiy---- 140 (333)
T KOG0991|consen 82 LELNASDER------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM-----------TAGAQQALRRTMEIY---- 140 (333)
T ss_pred hhccCcccc------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchh-----------hhHHHHHHHHHHHHH----
Confidence 556665521 2233333 33332222 23 39999999999 334566666666532
Q ss_pred CCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHH--cCCCCCcccchHHHHhhccccchhhHHHH
Q 011553 327 SRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHT--SRMTLADDVNLEEFVMTKDEFSGADIKTR 404 (483)
Q Consensus 327 ~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~--~~~~~~~~~~l~~la~~t~g~~~~~i~~~ 404 (483)
.....|+++||..+.+-+++.+ |+. ++.|...+..+...-+.... .+.+.. +..+..+...+ .+|++|+
T Consensus 141 -S~ttRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt-~dgLeaiifta----~GDMRQa 211 (333)
T KOG0991|consen 141 -SNTTRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYT-DDGLEAIIFTA----QGDMRQA 211 (333)
T ss_pred -cccchhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCC-cchHHHhhhhc----cchHHHH
Confidence 2356799999999999999988 886 78888777776655444333 333332 23355555443 4688888
Q ss_pred HHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHH
Q 011553 405 RRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEA 445 (483)
Q Consensus 405 ~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A 445 (483)
...+|.....+. .++-+.+-..++.-++--+..+++.+
T Consensus 212 lNnLQst~~g~g---~Vn~enVfKv~d~PhP~~v~~ml~~~ 249 (333)
T KOG0991|consen 212 LNNLQSTVNGFG---LVNQENVFKVCDEPHPLLVKKMLQAC 249 (333)
T ss_pred HHHHHHHhcccc---ccchhhhhhccCCCChHHHHHHHHHH
Confidence 888887665554 56666666677766776666665544
No 125
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.54 E-value=2.6e-13 Score=142.36 Aligned_cols=144 Identities=17% Similarity=0.305 Sum_probs=95.0
Q ss_pred CceEEEcCCCCchHHHHHHHHHHc-----CCceEEEechHHHhhhcCCch-HHHHHHHHHHhhcCCeEEEEcCCcccccc
Q 011553 226 KGVILYGEPGTGKTLLAKAVANST-----SATFLRVVGSELIQKYLGDGP-KLVRELFRVADDLSPSIVFIDEIDAVGTK 299 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l-----~~~~~~v~~~~l~~~~~g~~~-~~i~~~f~~a~~~~p~Il~iDEiD~l~~~ 299 (483)
.+++||||||||||+|++++|+++ +..++++++.++...+..... ..+.. |.......+.+|+|||++.+..+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 459999999999999999999975 457888898887765532211 11222 33222235789999999988432
Q ss_pred ccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEe-CCCCC---CChhhcCCCccc--eEEEcCCCCHHHHHHHHHH
Q 011553 300 RYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT-NRIES---LDPALLRPGRID--RKIEFPLPDIKTRRRIFQI 373 (483)
Q Consensus 300 r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~tt-n~~~~---ld~allr~gR~~--~~i~~~~P~~~~r~~Il~~ 373 (483)
...+..++.+++.+.. .+.. +|+|| +.|.. +.+.+.+ ||. ..+.+.+|+.+.|..|++.
T Consensus 210 ---------~~~q~elf~~~n~l~~---~~k~-iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 210 ---------TGVQTELFHTFNELHD---SGKQ-IVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred ---------HHHHHHHHHHHHHHHH---cCCe-EEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHH
Confidence 1234455555554422 2333 44555 45554 4567877 774 5889999999999999998
Q ss_pred HHcCCCCCcccc
Q 011553 374 HTSRMTLADDVN 385 (483)
Q Consensus 374 ~~~~~~~~~~~~ 385 (483)
.+....+.-+.+
T Consensus 275 ~~~~~~~~l~~e 286 (440)
T PRK14088 275 MLEIEHGELPEE 286 (440)
T ss_pred HHHhcCCCCCHH
Confidence 876544443333
No 126
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.54 E-value=2.1e-13 Score=141.55 Aligned_cols=238 Identities=16% Similarity=0.133 Sum_probs=140.1
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC--ceEEEechH-HHhhhcCC
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSE-LIQKYLGD 268 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~~~~-l~~~~~g~ 268 (483)
.|+|.+++++.+..++.. ..+|||+||||||||++|+++|...+. +|..+.+.- ......|.
T Consensus 21 ~i~gre~vI~lll~aala---------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 21 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred hccCcHHHHHHHHHHHcc---------------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 367888888887776643 467999999999999999999997753 444333320 11111221
Q ss_pred c-hHHH--HHHHHHHhhc---CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc----CCc-CCCCeEEEEEe
Q 011553 269 G-PKLV--RELFRVADDL---SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD----GFD-SRGDVKVILAT 337 (483)
Q Consensus 269 ~-~~~i--~~~f~~a~~~---~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~----~~~-~~~~v~vI~tt 337 (483)
. -... ...|...... ...+||+|||..+ +...+..|++++++-. +.. +...-++++||
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT 154 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS 154 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccC-----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC
Confidence 1 0000 1112111110 2249999999876 6778999999997532 111 11123445555
Q ss_pred CCCC---CCChhhcCCCccceEEEcCCCC-HHHHHHHHHHHHcC--CCCCcccchHHHHhhccccchhhHHHHHHHHHHh
Q 011553 338 NRIE---SLDPALLRPGRIDRKIEFPLPD-IKTRRRIFQIHTSR--MTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIH 411 (483)
Q Consensus 338 n~~~---~ld~allr~gR~~~~i~~~~P~-~~~r~~Il~~~~~~--~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~ 411 (483)
|... ...++++. ||...+.+|+|+ .++..+|+...... ..... ....+..++.++.+.+...
T Consensus 155 N~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~----------~~vis~eel~~lq~~v~~V 222 (498)
T PRK13531 155 NELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPA----------SLQITDEEYQQWQKEIGKI 222 (498)
T ss_pred CCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcc----------cCCCCHHHHHHHHHHhcce
Confidence 6422 12358988 998899999997 45567787754321 11110 1234455554443333221
Q ss_pred hccccccccCC--HHHHHh----cC--CCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhh
Q 011553 412 TSRMTLADDVN--LEEFVM----TK--DEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFK 472 (483)
Q Consensus 412 ~~~~~~~~~~~--l~~la~----~~--~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~ 472 (483)
.+.+.+- +..+.. .. ...|+|--.++++-|...|+.++|..|+++|+. .+..++..
T Consensus 223 ----~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 223 ----TLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred ----eCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhcc
Confidence 1111110 112221 11 237889999999999999999999999999999 77766643
No 127
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.54 E-value=1.7e-13 Score=149.95 Aligned_cols=251 Identities=18% Similarity=0.214 Sum_probs=153.5
Q ss_pred CcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc-------------------
Q 011553 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST------------------- 249 (483)
Q Consensus 189 ~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l------------------- 249 (483)
-|.+|+|++.++..+.-....| ...+|||+|++|||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 3778999999998887666543 12469999999999999999999987
Q ss_pred ----------------CCceEEEechHHHhhhcCCch--HHH--------HHHHHHHhhcCCeEEEEcCCccccccccCC
Q 011553 250 ----------------SATFLRVVGSELIQKYLGDGP--KLV--------RELFRVADDLSPSIVFIDEIDAVGTKRYDA 303 (483)
Q Consensus 250 ----------------~~~~~~v~~~~l~~~~~g~~~--~~i--------~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~ 303 (483)
..+|+.+.++......+|... ..+ ..++.. ...+|||||||+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~---A~~GiL~lDEi~~l------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAE---AHRGILYIDEVNLL------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceee---cCCCeEEeChhhhC-------
Confidence 246666554433222333210 000 011111 12369999999998
Q ss_pred CCCChHHHHHHHHHHHHhcc------CC--cCCCCeEEEEEeCCC-CCCChhhcCCCccceEEEcCCCC-HHHHHHHHHH
Q 011553 304 HSGGEREIQRTMLELLNQLD------GF--DSRGDVKVILATNRI-ESLDPALLRPGRIDRKIEFPLPD-IKTRRRIFQI 373 (483)
Q Consensus 304 ~~~~~~~~~~~l~~lL~~l~------~~--~~~~~v~vI~ttn~~-~~ld~allr~gR~~~~i~~~~P~-~~~r~~Il~~ 373 (483)
+...+..|++++++-. +. ....++++|+|+|.. ..+.++|++ ||+..|.++.+. .+++.+|+..
T Consensus 139 ----~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 139 ----DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ----CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 6678888998887421 11 112468999999863 358899999 999889998774 6778888875
Q ss_pred HHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcC--CCC-CHHHHHHHHHHHHHHHH
Q 011553 374 HTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTK--DEF-SGADIKAICTEAGLLAL 450 (483)
Q Consensus 374 ~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~--~g~-s~~di~~l~~~A~~~A~ 450 (483)
.+.... .. ..+.....+ ....+...+..+........+. +..+..++... .+. +.+....+++-|...|.
T Consensus 213 ~~~~~~-~~----~~~~~~~~~-~~~~l~~~i~~ar~~~~~V~is-~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~Aa 285 (633)
T TIGR02442 213 RLAFDA-DP----EAFAARWAA-EQEELRNRIARARSLLPSVRIS-DSLIRFISELCIEFGVDGHRADIVMARAARALAA 285 (633)
T ss_pred HHhhcc-Cc----HHHHHHhhh-hHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 543110 00 001000000 0001111111111111112221 11122222221 244 45666778999999999
Q ss_pred HhcCCCccHHHHHHHHHHHHhhccC
Q 011553 451 RERRMKVTHTDFKKAKEKVMFKKKE 475 (483)
Q Consensus 451 ~~~~~~it~ed~~~Al~~~~~~~~~ 475 (483)
.+++..|+.+|+..|+..++.....
T Consensus 286 L~gr~~V~~~Dv~~A~~lvL~hR~~ 310 (633)
T TIGR02442 286 LDGRRRVTAEDVREAAELVLPHRRR 310 (633)
T ss_pred HcCCCcCCHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999976553
No 128
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.54 E-value=1.6e-13 Score=152.95 Aligned_cols=166 Identities=23% Similarity=0.340 Sum_probs=122.1
Q ss_pred ccccccHHHHHHHHHHHhcCCCChhhhhhhCCC---CCC-ceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh---
Q 011553 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIK---PPK-GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ--- 263 (483)
Q Consensus 191 ~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~---~~~-gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~--- 263 (483)
..|+|++++++.|...+... ..|+. .|. ++||+||||||||++|+++|..++.+|++++++++..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~ 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHT 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhccc
Confidence 35789999999988887642 22332 133 4899999999999999999999999999999988754
Q ss_pred --hhcCCchHH-----HHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCc------CCCC
Q 011553 264 --KYLGDGPKL-----VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD------SRGD 330 (483)
Q Consensus 264 --~~~g~~~~~-----i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~------~~~~ 330 (483)
..+|..++. ...+....+....+||+|||||++ +.+.+..|+++++.-.-.. +-.+
T Consensus 526 ~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~ 594 (731)
T TIGR02639 526 VSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----------HPDIYNILLQVMDYATLTDNNGRKADFRN 594 (731)
T ss_pred HHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----------CHHHHHHHHHhhccCeeecCCCcccCCCC
Confidence 223332211 123444445566789999999988 6678899999887531111 1236
Q ss_pred eEEEEEeCCCC-------------------------CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcC
Q 011553 331 VKVILATNRIE-------------------------SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR 377 (483)
Q Consensus 331 v~vI~ttn~~~-------------------------~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~ 377 (483)
++||+|||... .+.|.|+. ||+.+|.|.+.+.++...|++..+..
T Consensus 595 ~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 595 VILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDE 664 (731)
T ss_pred CEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 88999998631 25677877 99999999999999999999987754
No 129
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.54 E-value=1e-14 Score=150.59 Aligned_cols=159 Identities=26% Similarity=0.443 Sum_probs=113.9
Q ss_pred CCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHH
Q 011553 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSEL 261 (483)
Q Consensus 185 ~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l 261 (483)
....+|++|+|-+.++.++.+.+.. ....+.+|||+|.+||||.++|++|++... .||+.+||+.+
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 4457899999999999999888765 356677899999999999999999999775 49999999755
Q ss_pred Hh---------h----hcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc-----
Q 011553 262 IQ---------K----YLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD----- 323 (483)
Q Consensus 262 ~~---------~----~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~----- 323 (483)
.. . |.|....--..+|+.|.. +.||+|||..| ...+|..|+.+|++-.
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem-----------pl~LQaKLLRVLQEkei~rvG 373 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERVG 373 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC-----------CHHHHHHHHHHHhhceEEecC
Confidence 33 1 222222212346666654 79999999888 7789999999998632
Q ss_pred CCcC-CCCeEEEEEeCCC--CCCChhhcCCC---ccceEEEcCCCCHHHHHH
Q 011553 324 GFDS-RGDVKVILATNRI--ESLDPALLRPG---RIDRKIEFPLPDIKTRRR 369 (483)
Q Consensus 324 ~~~~-~~~v~vI~ttn~~--~~ld~allr~g---R~~~~i~~~~P~~~~r~~ 369 (483)
+... .-+|.||+|||+. +.+...-+|.. |+. ++.+..|...+|.+
T Consensus 374 ~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLN-V~~i~iPPLReR~e 424 (560)
T COG3829 374 GTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLN-VIPITIPPLRERKE 424 (560)
T ss_pred CCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeec-eeeecCCCcccCcc
Confidence 1111 2379999999972 22222222211 443 77888888888765
No 130
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2.9e-13 Score=138.23 Aligned_cols=219 Identities=23% Similarity=0.324 Sum_probs=147.3
Q ss_pred ccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc-----eEEEechHHHhhh--
Q 011553 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-----FLRVVGSELIQKY-- 265 (483)
Q Consensus 193 i~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~-----~~~v~~~~l~~~~-- 265 (483)
+.+.++++.++..++...+. -..|.++++|||||||||.+++.++.++... ++++||..+.+.|
T Consensus 19 l~~Re~ei~~l~~~l~~~~~---------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPALR---------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc---------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 66899999999888765433 2445669999999999999999999987543 8999996543321
Q ss_pred -------------cCCch-HHHHHHHHHHhh-cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCC
Q 011553 266 -------------LGDGP-KLVRELFRVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD 330 (483)
Q Consensus 266 -------------~g~~~-~~i~~~f~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~ 330 (483)
.|... .....+++.... ...-||++||+|.|..+. . ..|..|+...... ..+
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~-------~----~~LY~L~r~~~~~--~~~ 156 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD-------G----EVLYSLLRAPGEN--KVK 156 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc-------c----hHHHHHHhhcccc--cee
Confidence 11111 222333333322 245699999999996542 1 5566666544433 557
Q ss_pred eEEEEEeCCC---CCCChhhcCCCccc-eEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHH
Q 011553 331 VKVILATNRI---ESLDPALLRPGRID-RKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRR 406 (483)
Q Consensus 331 v~vI~ttn~~---~~ld~allr~gR~~-~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r 406 (483)
|.+|+.+|.. +.+++.+.+ ++. ..|.||+++.+|...|+.......-.....+
T Consensus 157 v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~--------------------- 213 (366)
T COG1474 157 VSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVID--------------------- 213 (366)
T ss_pred EEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcC---------------------
Confidence 8899999875 467888877 553 4689999999999999997765431111100
Q ss_pred HHHHhhccccccccCCHHHHH---hcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 011553 407 IFQIHTSRMTLADDVNLEEFV---MTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 407 ~~~~~~~~~~~~~~~~l~~la---~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~ 470 (483)
+..+..++ ....| ..+-...+|+.|+..|.++++..++.+|+..|...+-
T Consensus 214 -------------~~vl~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~ 266 (366)
T COG1474 214 -------------DDVLKLIAALVAAESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIE 266 (366)
T ss_pred -------------ccHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhh
Confidence 11122222 22222 3344556999999999999999999999999955543
No 131
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.1e-12 Score=142.61 Aligned_cols=167 Identities=19% Similarity=0.214 Sum_probs=118.7
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEE----E-
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLR----V- 256 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~----v- 256 (483)
.+++++.+|++++|.+.+++.|..++... ....++||+||+|+|||++|+++|+.+.+.... -
T Consensus 7 ~~kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14948 7 HHKYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP 74 (620)
T ss_pred HHHhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC
Confidence 35778899999999999999999988752 234579999999999999999999998752110 0
Q ss_pred --ech---HHH----------hhhcCCchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHHHHHHH
Q 011553 257 --VGS---ELI----------QKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLE 317 (483)
Q Consensus 257 --~~~---~l~----------~~~~g~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ 317 (483)
.|. .+. ..........+++++..+... ...||||||+|.| +.+.+..|+.
T Consensus 75 Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-----------t~~a~naLLK 143 (620)
T PRK14948 75 CGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-----------STAAFNALLK 143 (620)
T ss_pred CcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-----------CHHHHHHHHH
Confidence 010 010 001122345677777666432 2359999999998 3344555555
Q ss_pred HHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCC
Q 011553 318 LLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT 379 (483)
Q Consensus 318 lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~ 379 (483)
.|+ . +...++||++|+.++.+.+.+++ |+. .++|+.++.++....+...+....
T Consensus 144 ~LE---e--Pp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~keg 197 (620)
T PRK14948 144 TLE---E--PPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKES 197 (620)
T ss_pred HHh---c--CCcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhC
Confidence 554 2 35678899999888889999988 885 899999998888777776665543
No 132
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.53 E-value=2.2e-13 Score=140.43 Aligned_cols=147 Identities=22% Similarity=0.349 Sum_probs=94.3
Q ss_pred ccccHHHHHHHHHHHhcCCCChhh----hhhhCC-CCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh-hhc
Q 011553 193 IGGLDAQIQEIKEAVELPLTHPEL----YEDIGI-KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-KYL 266 (483)
Q Consensus 193 i~Gl~~~~~~l~e~i~~pl~~~~~----~~~~g~-~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~-~~~ 266 (483)
|+|++++++.+..++......-.. ....++ ....++||+||||||||++|+++|..++.+|..++++.+.. .|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 689999999998777321111000 000011 12357999999999999999999999999999999888753 577
Q ss_pred CCc-hHHHHHHHHHH----hhcCCeEEEEcCCccccccccCCC---CCChHHHHHHHHHHHHhcc--------CCcCCCC
Q 011553 267 GDG-PKLVRELFRVA----DDLSPSIVFIDEIDAVGTKRYDAH---SGGEREIQRTMLELLNQLD--------GFDSRGD 330 (483)
Q Consensus 267 g~~-~~~i~~~f~~a----~~~~p~Il~iDEiD~l~~~r~~~~---~~~~~~~~~~l~~lL~~l~--------~~~~~~~ 330 (483)
|.. ...+..++..+ ....++||||||||++..++.... .-....+|+.|+++|+..- ...+..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 764 34444444432 234578999999999976532211 1112367888888884210 0111235
Q ss_pred eEEEEEeCC
Q 011553 331 VKVILATNR 339 (483)
Q Consensus 331 v~vI~ttn~ 339 (483)
.++|+|+|-
T Consensus 239 ~i~i~TsNi 247 (413)
T TIGR00382 239 FIQIDTSNI 247 (413)
T ss_pred eEEEEcCCc
Confidence 778888775
No 133
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=5.2e-13 Score=144.35 Aligned_cols=168 Identities=16% Similarity=0.228 Sum_probs=116.4
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceE-------
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFL------- 254 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~------- 254 (483)
.+++++.+|++|+|++.+++.|+.++.. -..+.++||+||+|||||++|+++|+.+.+.--
T Consensus 7 ~~kyRP~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14954 7 ARKYRPSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYL 74 (620)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccc
Confidence 3567889999999999999999998865 245677999999999999999999999876210
Q ss_pred ----E-----EechHHHh-------hhcC---CchHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChHHH
Q 011553 255 ----R-----VVGSELIQ-------KYLG---DGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREI 311 (483)
Q Consensus 255 ----~-----v~~~~l~~-------~~~g---~~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 311 (483)
. -+|..+.. .+-+ .....++.+.+.+.. ....|++|||+|.+ +...
T Consensus 75 ~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L-----------t~~a 143 (620)
T PRK14954 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHML-----------STAA 143 (620)
T ss_pred cccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhc-----------CHHH
Confidence 0 00111100 0111 113445555544422 22359999999998 2334
Q ss_pred HHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCC
Q 011553 312 QRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTL 380 (483)
Q Consensus 312 ~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~ 380 (483)
+..|+..|++ +...+++|++|+.+..+.+.+.+ |+. .++|..++.++....+...+.....
T Consensus 144 ~naLLK~LEe-----Pp~~tv~IL~t~~~~kLl~TI~S--Rc~-~vef~~l~~~ei~~~L~~i~~~egi 204 (620)
T PRK14954 144 FNAFLKTLEE-----PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLDEIQSQLQMICRAEGI 204 (620)
T ss_pred HHHHHHHHhC-----CCCCeEEEEEeCChhhhhHHHHh--hce-EEecCCCCHHHHHHHHHHHHHHcCC
Confidence 4555555543 24567788888888889899988 884 9999999999988888876665443
No 134
>PRK08727 hypothetical protein; Validated
Probab=99.51 E-value=2.4e-12 Score=124.10 Aligned_cols=127 Identities=20% Similarity=0.327 Sum_probs=87.8
Q ss_pred CceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccC
Q 011553 226 KGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYD 302 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~ 302 (483)
..++|+||+|||||+|++++|+++ +....+++..++... +...+... ....+|+|||++.+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~--------~~~~~~~l--~~~dlLiIDDi~~l~~~--- 108 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGR--------LRDALEAL--EGRSLVALDGLESIAGQ--- 108 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhh--------HHHHHHHH--hcCCEEEEeCcccccCC---
Confidence 449999999999999999998764 445566665554322 22333332 23469999999988432
Q ss_pred CCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC-CCCC---ChhhcCCCcc--ceEEEcCCCCHHHHHHHHHHHHc
Q 011553 303 AHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR-IESL---DPALLRPGRI--DRKIEFPLPDIKTRRRIFQIHTS 376 (483)
Q Consensus 303 ~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~-~~~l---d~allr~gR~--~~~i~~~~P~~~~r~~Il~~~~~ 376 (483)
...+..++++++.... .+..+|+|+|. |..+ ++.|.+ || ...+.+++|+.+++..|++.++.
T Consensus 109 ------~~~~~~lf~l~n~~~~----~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 109 ------REDEVALFDFHNRARA----AGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred ------hHHHHHHHHHHHHHHH----cCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHH
Confidence 2345667777765532 23447777764 5544 689988 86 46899999999999999998665
Q ss_pred C
Q 011553 377 R 377 (483)
Q Consensus 377 ~ 377 (483)
.
T Consensus 177 ~ 177 (233)
T PRK08727 177 R 177 (233)
T ss_pred H
Confidence 4
No 135
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.50 E-value=9.1e-13 Score=129.25 Aligned_cols=132 Identities=26% Similarity=0.259 Sum_probs=98.4
Q ss_pred CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC------------CCCCChhhcCCC
Q 011553 284 SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR------------IESLDPALLRPG 351 (483)
Q Consensus 284 ~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~------------~~~ld~allr~g 351 (483)
-|+||||||++.| +-+...-|+..|.. .-.-++|++||+ |.-+|..|++
T Consensus 291 VpGVLFIDEvHmL-----------DIE~FsFlnrAlEs------e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD-- 351 (450)
T COG1224 291 VPGVLFIDEVHML-----------DIECFSFLNRALES------ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD-- 351 (450)
T ss_pred ecceEEEechhhh-----------hHHHHHHHHHHhhc------ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--
Confidence 3779999999887 44444444444431 123457788885 5678888998
Q ss_pred ccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCC
Q 011553 352 RIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKD 431 (483)
Q Consensus 352 R~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~ 431 (483)
|+ .+|...+++.++.++|+++......+.-+ +..++.++....
T Consensus 352 Rl-lII~t~py~~~EireIi~iRa~ee~i~l~------------------------------------~~Ale~L~~ig~ 394 (450)
T COG1224 352 RL-LIISTRPYSREEIREIIRIRAKEEDIELS------------------------------------DDALEYLTDIGE 394 (450)
T ss_pred he-eEEecCCCCHHHHHHHHHHhhhhhccccC------------------------------------HHHHHHHHhhch
Confidence 88 48888999999999999988876554332 344666666666
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 011553 432 EFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMF 471 (483)
Q Consensus 432 g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~ 471 (483)
.-|-+-..+|+.-|...|.++++..|..+|++.|.+-.+.
T Consensus 395 etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF~D 434 (450)
T COG1224 395 ETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELFLD 434 (450)
T ss_pred hhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHHhh
Confidence 6677777788899999999999999999999999876654
No 136
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=1.5e-12 Score=141.45 Aligned_cols=187 Identities=18% Similarity=0.258 Sum_probs=131.1
Q ss_pred ecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC---------
Q 011553 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA--------- 251 (483)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~--------- 251 (483)
+.+++++.+|++|+|.+.+++.|..++.. -..++.+|||||+|+|||++|+++|+.+.+
T Consensus 7 ~~~kyRP~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~ 74 (614)
T PRK14971 7 SARKYRPSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEA 74 (614)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 56788899999999999999999999875 144667999999999999999999998753
Q ss_pred ----------------ceEEEechHHHhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHH
Q 011553 252 ----------------TFLRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREI 311 (483)
Q Consensus 252 ----------------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~ 311 (483)
+++.+++.. ......++.+...+... ...|++|||+|.+ +.+.
T Consensus 75 Cg~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-----------s~~a 137 (614)
T PRK14971 75 CNECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-----------SQAA 137 (614)
T ss_pred CCcchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccC-----------CHHH
Confidence 222222211 11134566666555432 2349999999998 3345
Q ss_pred HHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccc-hHHHH
Q 011553 312 QRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVN-LEEFV 390 (483)
Q Consensus 312 ~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~-l~~la 390 (483)
+..|+..|++ +...+++|++|+.+..+.+++++ |+. +++|.+++.++...++...+...++.-+.+ +..++
T Consensus 138 ~naLLK~LEe-----pp~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La 209 (614)
T PRK14971 138 FNAFLKTLEE-----PPSYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIA 209 (614)
T ss_pred HHHHHHHHhC-----CCCCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5666666653 24567888888888899999998 885 899999999999988887776655543322 34444
Q ss_pred hhccccchhhHHHHHHHH
Q 011553 391 MTKDEFSGADIKTRRRIF 408 (483)
Q Consensus 391 ~~t~g~~~~~i~~~~r~~ 408 (483)
..+ ++++..+...+
T Consensus 210 ~~s----~gdlr~al~~L 223 (614)
T PRK14971 210 QKA----DGGMRDALSIF 223 (614)
T ss_pred HHc----CCCHHHHHHHH
Confidence 333 34444444443
No 137
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.49 E-value=1.6e-12 Score=123.43 Aligned_cols=169 Identities=23% Similarity=0.305 Sum_probs=119.0
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEec
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVG 258 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~ 258 (483)
+....++.+++++|.+.+++.|.+.....+. -.+..++||||++|||||++++++.++. |..++.+..
T Consensus 18 i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~---------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k 88 (249)
T PF05673_consen 18 IKHPDPIRLDDLIGIERQKEALIENTEQFLQ---------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSK 88 (249)
T ss_pred cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHc---------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECH
Confidence 3445578899999999999999887765432 2457789999999999999999999976 457777776
Q ss_pred hHHHhhhcCCchHHHHHHHHHHhh-cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCC-cCCCCeEEEEE
Q 011553 259 SELIQKYLGDGPKLVRELFRVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-DSRGDVKVILA 336 (483)
Q Consensus 259 ~~l~~~~~g~~~~~i~~~f~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~-~~~~~v~vI~t 336 (483)
.++. .+..++...+. ..+-|||+|++. + .. .......|..+|+- ++ ....+|+|.+|
T Consensus 89 ~~L~---------~l~~l~~~l~~~~~kFIlf~DDLs-F-e~--------~d~~yk~LKs~LeG--gle~~P~NvliyAT 147 (249)
T PF05673_consen 89 EDLG---------DLPELLDLLRDRPYKFILFCDDLS-F-EE--------GDTEYKALKSVLEG--GLEARPDNVLIYAT 147 (249)
T ss_pred HHhc---------cHHHHHHHHhcCCCCEEEEecCCC-C-CC--------CcHHHHHHHHHhcC--ccccCCCcEEEEEe
Confidence 6652 23344555442 245699999973 1 11 11223455555541 12 23568999999
Q ss_pred eCCCCCCChh-----------------------hcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCc
Q 011553 337 TNRIESLDPA-----------------------LLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD 382 (483)
Q Consensus 337 tn~~~~ld~a-----------------------llr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~ 382 (483)
+|+-+.++.. |- .||...|.|.+|+.++..+|++.++....+.-
T Consensus 148 SNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLs--DRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~ 214 (249)
T PF05673_consen 148 SNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLS--DRFGLWLSFYPPDQEEYLAIVRHYAERYGLEL 214 (249)
T ss_pred cchhhccchhhhhccCCCccccCcchHHHHHHhHH--HhCCcEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 9984333221 33 39999999999999999999999997665543
No 138
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.9e-13 Score=148.33 Aligned_cols=167 Identities=25% Similarity=0.426 Sum_probs=129.3
Q ss_pred ccccccHHHHHHHHHHHhcCCCChhhhhhhCCC----CCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHHHh
Q 011553 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIK----PPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQ 263 (483)
Q Consensus 191 ~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~----~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l~~ 263 (483)
..|+|+++++..+..+|.. .+.|+. |..++||.||+|+|||-||+++|..+. ..++++++|++..
T Consensus 491 ~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 4578999999999999876 234443 234588999999999999999999997 7999999999876
Q ss_pred -----hhcCCchHHH-----HHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCC-----
Q 011553 264 -----KYLGDGPKLV-----RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSR----- 328 (483)
Q Consensus 264 -----~~~g~~~~~i-----~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~----- 328 (483)
+.+|..++.+ ..+-+..+....|||+||||++- ++++..+|+++|+.-.-.+..
T Consensus 563 kHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA-----------HpdV~nilLQVlDdGrLTD~~Gr~Vd 631 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA-----------HPDVFNLLLQVLDDGRLTDGQGRTVD 631 (786)
T ss_pred HHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc-----------CHHHHHHHHHHhcCCeeecCCCCEEe
Confidence 3455555554 23555666666799999999887 889999999999853322222
Q ss_pred -CCeEEEEEeCCC----------------------------CCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCC
Q 011553 329 -GDVKVILATNRI----------------------------ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM 378 (483)
Q Consensus 329 -~~v~vI~ttn~~----------------------------~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~ 378 (483)
.++++|||||-- ..+.|+++. |++.+|.|.+.+.+...+|+...+..+
T Consensus 632 FrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l 708 (786)
T COG0542 632 FRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRL 708 (786)
T ss_pred cceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHH
Confidence 368999999842 114567777 999999999999999999998777543
No 139
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=1.5e-12 Score=141.55 Aligned_cols=181 Identities=16% Similarity=0.216 Sum_probs=119.6
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEE------
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLR------ 255 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~------ 255 (483)
.+++.+.+|++|+|++.+++.|+.++... ..++.+||+||+|+|||++|+++|+.+.+....
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c 74 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPC 74 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 36788899999999999999999888751 335568999999999999999999987642210
Q ss_pred ---EechHHHhh----h------cCCchHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHH
Q 011553 256 ---VVGSELIQK----Y------LGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLEL 318 (483)
Q Consensus 256 ---v~~~~l~~~----~------~g~~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l 318 (483)
-.|..+... + .......++++.+.+.. ....||||||+|.| +.+....|+..
T Consensus 75 ~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L-----------~~~a~naLLk~ 143 (585)
T PRK14950 75 GTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHML-----------STAAFNALLKT 143 (585)
T ss_pred ccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhC-----------CHHHHHHHHHH
Confidence 001111100 0 01122344555444332 22459999999988 22334444444
Q ss_pred HHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccc-hHHHHhhc
Q 011553 319 LNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVN-LEEFVMTK 393 (483)
Q Consensus 319 L~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~-l~~la~~t 393 (483)
++ .. ...++||++++..+.+.+.+.+ |+. .+.|+.++..+...++...+...++.-+.+ +..++..+
T Consensus 144 LE---ep--p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s 211 (585)
T PRK14950 144 LE---EP--PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAA 211 (585)
T ss_pred Hh---cC--CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 44 32 3567888888888888888987 885 789999999999988887766554432222 44444433
No 140
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.49 E-value=5.5e-13 Score=132.66 Aligned_cols=139 Identities=16% Similarity=0.193 Sum_probs=103.4
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhh--hcCCchH----------HHHHHHHHHhhcCCeEEEEcC
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK--YLGDGPK----------LVRELFRVADDLSPSIVFIDE 292 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~--~~g~~~~----------~i~~~f~~a~~~~p~Il~iDE 292 (483)
.++|||.||||||||++++.+|..++.+++++++...... .+|...- .....+..|.. .+.++++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 5679999999999999999999999999999988765543 3443210 01122333332 457899999
Q ss_pred CccccccccCCCCCChHHHHHHHHHHHHh-----cc----CCcCCCCeEEEEEeCCCC------------CCChhhcCCC
Q 011553 293 IDAVGTKRYDAHSGGEREIQRTMLELLNQ-----LD----GFDSRGDVKVILATNRIE------------SLDPALLRPG 351 (483)
Q Consensus 293 iD~l~~~r~~~~~~~~~~~~~~l~~lL~~-----l~----~~~~~~~v~vI~ttn~~~------------~ld~allr~g 351 (483)
+|.. ..+.+..|..+|+. +. .+....+++||+|+|... .+++++++
T Consensus 143 in~a-----------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD-- 209 (327)
T TIGR01650 143 YDAG-----------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD-- 209 (327)
T ss_pred hhcc-----------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--
Confidence 9987 56677888888763 11 122445799999999854 36899999
Q ss_pred ccceEEEcCCCCHHHHHHHHHHHHcC
Q 011553 352 RIDRKIEFPLPDIKTRRRIFQIHTSR 377 (483)
Q Consensus 352 R~~~~i~~~~P~~~~r~~Il~~~~~~ 377 (483)
||..++.+..|+.++..+|+......
T Consensus 210 RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99878899999999999999876543
No 141
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.48 E-value=2.4e-12 Score=134.94 Aligned_cols=144 Identities=17% Similarity=0.280 Sum_probs=97.5
Q ss_pred CceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccC
Q 011553 226 KGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYD 302 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~ 302 (483)
++++||||+|+|||+|++++++++ +..++++++..+...+.......-...|.... ..+.+|+|||++.+..+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k--- 217 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGK--- 217 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCC---
Confidence 569999999999999999999976 57888888887765443221111112233322 34579999999988432
Q ss_pred CCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC-CC---CCChhhcCCCccc--eEEEcCCCCHHHHHHHHHHHHc
Q 011553 303 AHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR-IE---SLDPALLRPGRID--RKIEFPLPDIKTRRRIFQIHTS 376 (483)
Q Consensus 303 ~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~-~~---~ld~allr~gR~~--~~i~~~~P~~~~r~~Il~~~~~ 376 (483)
...+..+..+++.+.. .+. .+|+||+. |. .+++.|.+ ||. ..+.+++|+.++|..|++..+.
T Consensus 218 ------~~~qeelf~l~N~l~~---~~k-~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 218 ------GATQEEFFHTFNSLHT---EGK-LIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred ------hhhHHHHHHHHHHHHH---CCC-cEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 2345566666654321 223 45666654 43 46788988 985 7999999999999999998887
Q ss_pred CCCCCcccc
Q 011553 377 RMTLADDVN 385 (483)
Q Consensus 377 ~~~~~~~~~ 385 (483)
...+.-+.+
T Consensus 286 ~~~~~l~~e 294 (445)
T PRK12422 286 ALSIRIEET 294 (445)
T ss_pred HcCCCCCHH
Confidence 665544333
No 142
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.48 E-value=2e-12 Score=131.23 Aligned_cols=237 Identities=24% Similarity=0.228 Sum_probs=146.1
Q ss_pred ccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh--hhcCCch
Q 011553 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ--KYLGDGP 270 (483)
Q Consensus 193 i~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~--~~~g~~~ 270 (483)
++|.++++..+..++.. ..++||.||||||||+||+++|..++.+|+++.|..... ...|...
T Consensus 26 ~~g~~~~~~~~l~a~~~---------------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 26 VVGDEEVIELALLALLA---------------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeccHHHHHHHHHHHHc---------------CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 66778877777666654 467999999999999999999999999999999864322 1111111
Q ss_pred HHHH------------HHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc----C---CcCCCCe
Q 011553 271 KLVR------------ELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD----G---FDSRGDV 331 (483)
Q Consensus 271 ~~i~------------~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~----~---~~~~~~v 331 (483)
-... -+|.... +|+++|||+.. ....+..|++.|++.. + +.-...+
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInra-----------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f 155 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVR----VILLLDEINRA-----------PPEVQNALLEALEERQVTVPGLTTIRLPPPF 155 (329)
T ss_pred HhhhhccCCeEEEecCCcccccc----eEEEEeccccC-----------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCC
Confidence 0000 0111111 49999999877 6788999999998622 2 2234578
Q ss_pred EEEEEeC-----CCCCCChhhcCCCccceEEEcCCCCHH-HHHHHHHHHHcCC------CCCcccchHHHHhh---c-cc
Q 011553 332 KVILATN-----RIESLDPALLRPGRIDRKIEFPLPDIK-TRRRIFQIHTSRM------TLADDVNLEEFVMT---K-DE 395 (483)
Q Consensus 332 ~vI~ttn-----~~~~ld~allr~gR~~~~i~~~~P~~~-~r~~Il~~~~~~~------~~~~~~~l~~la~~---t-~g 395 (483)
+||+|+| ....+++++++ ||...+.++.|+.+ +...++....... ....-+....+... . ..
T Consensus 156 ~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 233 (329)
T COG0714 156 IVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKV 233 (329)
T ss_pred EEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHhhhccC
Confidence 8999989 45568999999 99889999999444 4444444333211 11111111111111 1 11
Q ss_pred cchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhh
Q 011553 396 FSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFK 472 (483)
Q Consensus 396 ~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~ 472 (483)
....++......+....+.. .+ ...|.+++....+...+...|...++..+..+|+......++..
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~-----~~------~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~~~~~~~ 299 (329)
T COG0714 234 PVSDEVIDYIVTLVAALREA-----PD------VALGASPRASLALLAALRALALLDGRDAVIPDDVKALAEPALAH 299 (329)
T ss_pred CchHHHHHHHHHHHHhhccc-----cc------hhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHhhhhhhh
Confidence 11122222211111111110 00 23355777778888888888888889999999988877766654
No 143
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.48 E-value=1.1e-12 Score=140.19 Aligned_cols=258 Identities=16% Similarity=0.143 Sum_probs=147.1
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc-eEEE---echHHHhhhcC
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-FLRV---VGSELIQKYLG 267 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~-~~~v---~~~~l~~~~~g 267 (483)
+|.|.+.++..|.-.+..... +..-....+....+|||+|+||||||++|+++++..... |+.. ++..+......
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 467888777766555433110 000011112334469999999999999999999987643 3221 22222111100
Q ss_pred C---chHHH-HHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc------CCc--CCCCeEEEE
Q 011553 268 D---GPKLV-RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD------GFD--SRGDVKVIL 335 (483)
Q Consensus 268 ~---~~~~i-~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~------~~~--~~~~v~vI~ 335 (483)
. +...+ ...+.. ...++++|||+|.+ ....+..|++.+++-. +.. -..++.||+
T Consensus 283 ~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~l-----------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viA 348 (509)
T smart00350 283 DPETREFTLEGGALVL---ADNGVCCIDEFDKM-----------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLA 348 (509)
T ss_pred ccCcceEEecCccEEe---cCCCEEEEechhhC-----------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEE
Confidence 0 00000 001111 23469999999998 5567888888886421 111 124789999
Q ss_pred EeCCCC-------------CCChhhcCCCccceEEEc-CCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhH
Q 011553 336 ATNRIE-------------SLDPALLRPGRIDRKIEF-PLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADI 401 (483)
Q Consensus 336 ttn~~~-------------~ld~allr~gR~~~~i~~-~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i 401 (483)
|+|..+ .+++++++ ||+.++.+ ..|+.+...+|+++.+.........+.. ....-++...+
T Consensus 349 a~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~---~~~~~~~~~~l 423 (509)
T smart00350 349 AANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDE---ADEVPISQEFL 423 (509)
T ss_pred EeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccc---cccccCCHHHH
Confidence 999742 58999999 99876555 6889999999988755322110000000 00011222333
Q ss_pred HHHHHHHHHhhccccccccCCHHHH-----H----------hcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 011553 402 KTRRRIFQIHTSRMTLADDVNLEEF-----V----------MTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAK 466 (483)
Q Consensus 402 ~~~~r~~~~~~~~~~~~~~~~l~~l-----a----------~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al 466 (483)
..++..+.....+. +.+. ..+.+ . ...-+.|.|.+.+|++-|.+.|..+.+..|+.+|+..|+
T Consensus 424 ~~yi~~ar~~~~P~-ls~~-~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai 501 (509)
T smart00350 424 RKYIAYAREKIKPK-LSEE-AAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAI 501 (509)
T ss_pred HHHHHHHHhcCCCC-CCHH-HHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 33332222200000 1110 00000 0 012367899999999999999999999999999999999
Q ss_pred HHHHh
Q 011553 467 EKVMF 471 (483)
Q Consensus 467 ~~~~~ 471 (483)
+-+..
T Consensus 502 ~l~~~ 506 (509)
T smart00350 502 RLLRE 506 (509)
T ss_pred HHHHH
Confidence 87754
No 144
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.47 E-value=9e-13 Score=139.55 Aligned_cols=233 Identities=20% Similarity=0.257 Sum_probs=136.4
Q ss_pred CCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC-----------------
Q 011553 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS----------------- 250 (483)
Q Consensus 188 ~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~----------------- 250 (483)
..|+|+.|.+.+++.+.-.+. ...+++|+||||||||+++++++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~---------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA---------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc---------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 378999999998777655443 245699999999999999999997432
Q ss_pred -----------CceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHH
Q 011553 251 -----------ATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELL 319 (483)
Q Consensus 251 -----------~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL 319 (483)
.||....++......+|.....-...+..| ..++|||||++.+ ....+..|.+.|
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~-----------~~~~~~~L~~~L 319 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEF-----------KRSVLDALREPI 319 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhC-----------CHHHHHHHHHHH
Confidence 122222222111111222111111123333 2379999999988 567788888888
Q ss_pred Hhcc----C----CcCCCCeEEEEEeCCC-----C------------------CCChhhcCCCccceEEEcCCCCHHHHH
Q 011553 320 NQLD----G----FDSRGDVKVILATNRI-----E------------------SLDPALLRPGRIDRKIEFPLPDIKTRR 368 (483)
Q Consensus 320 ~~l~----~----~~~~~~v~vI~ttn~~-----~------------------~ld~allr~gR~~~~i~~~~P~~~~r~ 368 (483)
+.-. . ..-..++.+|+++|.- . .+..+|++ ||+..+.++.++..+..
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~ 397 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLL 397 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHh
Confidence 6321 0 1112478999999862 1 47888999 99999999988765321
Q ss_pred HHHHHHHcCCCCCcccchHHHHhh-----------------ccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCC
Q 011553 369 RIFQIHTSRMTLADDVNLEEFVMT-----------------KDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKD 431 (483)
Q Consensus 369 ~Il~~~~~~~~~~~~~~l~~la~~-----------------t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~ 431 (483)
. ...-.....+.+-+.. ...+++..+...+.+-. +..++-.-+....
T Consensus 398 ---~----~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~---------~~~~~l~~a~~~~ 461 (499)
T TIGR00368 398 ---S----TGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSA---------IDANDLEGALNKL 461 (499)
T ss_pred ---c----cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCH---------HHHHHHHHHHHhc
Confidence 0 0000000000000000 00111111111100000 0001111122334
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 011553 432 EFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKE 467 (483)
Q Consensus 432 g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~ 467 (483)
++|.|....+++-|...|..+++..|+.+|+.+|+.
T Consensus 462 ~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 462 GLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred CCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 689999999999999999999999999999999985
No 145
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.46 E-value=3.1e-12 Score=134.56 Aligned_cols=137 Identities=20% Similarity=0.310 Sum_probs=95.9
Q ss_pred CceEEEcCCCCchHHHHHHHHHHc-----CCceEEEechHHHhhhcCCchH---HHHHHHHHHhhcCCeEEEEcCCcccc
Q 011553 226 KGVILYGEPGTGKTLLAKAVANST-----SATFLRVVGSELIQKYLGDGPK---LVRELFRVADDLSPSIVFIDEIDAVG 297 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l-----~~~~~~v~~~~l~~~~~g~~~~---~i~~~f~~a~~~~p~Il~iDEiD~l~ 297 (483)
.+++|||++|+|||+|++|+++++ +..++++++.++...+...... .+..+... ...+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEecccccc
Confidence 469999999999999999999954 4577889998887765433221 12221111 2345699999999884
Q ss_pred ccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC-CC---CCChhhcCCCccc--eEEEcCCCCHHHHHHHH
Q 011553 298 TKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR-IE---SLDPALLRPGRID--RKIEFPLPDIKTRRRIF 371 (483)
Q Consensus 298 ~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~-~~---~ld~allr~gR~~--~~i~~~~P~~~~r~~Il 371 (483)
. ....+..+..+++.+.. .+. .+|+|+|. |. .+++.|.+ ||. ..+.+.+|+.++|..|+
T Consensus 220 ~---------k~~~~e~lf~l~N~~~~---~~k-~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 220 Y---------KEKTNEIFFTIFNNFIE---NDK-QLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred C---------CHHHHHHHHHHHHHHHH---cCC-cEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHH
Confidence 2 23456677777776532 222 46677665 33 35688888 884 58889999999999999
Q ss_pred HHHHcCCC
Q 011553 372 QIHTSRMT 379 (483)
Q Consensus 372 ~~~~~~~~ 379 (483)
+..+....
T Consensus 285 ~~~~~~~g 292 (450)
T PRK14087 285 KKEIKNQN 292 (450)
T ss_pred HHHHHhcC
Confidence 98887544
No 146
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.46 E-value=1.3e-12 Score=114.53 Aligned_cols=140 Identities=44% Similarity=0.685 Sum_probs=95.7
Q ss_pred ccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhhhcCCchH
Q 011553 195 GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGDGPK 271 (483)
Q Consensus 195 Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~~~g~~~~ 271 (483)
|.+.+++.+..++.. ....+++|+||||||||++++.+++.+ +.+++.+++.............
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh
Confidence 566777777777654 235679999999999999999999998 8899999888765543222111
Q ss_pred H---HHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCC-cCCCCeEEEEEeCCCC--CCCh
Q 011553 272 L---VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-DSRGDVKVILATNRIE--SLDP 345 (483)
Q Consensus 272 ~---i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~-~~~~~v~vI~ttn~~~--~ld~ 345 (483)
. ....+.......+.+|+|||++.+ .......+..++...... ....++.+|+++|... .+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lilDe~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 69 GHFLVRLLFELAEKAKPGVLFIDEIDSL-----------SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hhhhHhHHHHhhccCCCeEEEEeChhhh-----------hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcCh
Confidence 1 112233344456789999999887 223344555555543221 1135789999998876 6778
Q ss_pred hhcCCCccceEEEcC
Q 011553 346 ALLRPGRIDRKIEFP 360 (483)
Q Consensus 346 allr~gR~~~~i~~~ 360 (483)
.+.+ ||+..+.++
T Consensus 138 ~~~~--r~~~~i~~~ 150 (151)
T cd00009 138 ALYD--RLDIRIVIP 150 (151)
T ss_pred hHHh--hhccEeecC
Confidence 8877 998777776
No 147
>PRK05642 DNA replication initiation factor; Validated
Probab=99.46 E-value=7.9e-12 Score=120.60 Aligned_cols=180 Identities=18% Similarity=0.227 Sum_probs=113.3
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCcccccccc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRY 301 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~ 301 (483)
...++||||+|||||+|++++|+++ +...++++..++.... ..+.+.... ..+|+|||++.+..+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~-- 112 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGK-- 112 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCC--
Confidence 3569999999999999999999764 5677888888776431 122222222 258999999987322
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCC---CChhhcCCCccc--eEEEcCCCCHHHHHHHHHHHHc
Q 011553 302 DAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES---LDPALLRPGRID--RKIEFPLPDIKTRRRIFQIHTS 376 (483)
Q Consensus 302 ~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~---ld~allr~gR~~--~~i~~~~P~~~~r~~Il~~~~~ 376 (483)
...+..|..+++.+. ..+..++|.++..|.. ..+.|++ ||. ..+.+..|+.+++..+++....
T Consensus 113 -------~~~~~~Lf~l~n~~~---~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 113 -------ADWEEALFHLFNRLR---DSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred -------hHHHHHHHHHHHHHH---hcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 234566777877542 2334455555444433 3688988 883 5888999999999999996554
Q ss_pred CCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 011553 377 RMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMK 456 (483)
Q Consensus 377 ~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~ 456 (483)
...+.-+ +...+.++....+ +.+.+..++..--..++..+ ..
T Consensus 181 ~~~~~l~------------------------------------~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~~-~~ 222 (234)
T PRK05642 181 RRGLHLT------------------------------------DEVGHFILTRGTR-SMSALFDLLERLDQASLQAQ-RK 222 (234)
T ss_pred HcCCCCC------------------------------------HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcC-Cc
Confidence 4332211 1123334444333 45666666665544444333 45
Q ss_pred ccHHHHHHHH
Q 011553 457 VTHTDFKKAK 466 (483)
Q Consensus 457 it~ed~~~Al 466 (483)
||..-+++++
T Consensus 223 it~~~~~~~L 232 (234)
T PRK05642 223 LTIPFLKETL 232 (234)
T ss_pred CCHHHHHHHh
Confidence 7877777665
No 148
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.45 E-value=3e-12 Score=122.18 Aligned_cols=170 Identities=25% Similarity=0.387 Sum_probs=104.1
Q ss_pred CCCCccccc-c--cHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc-----CCceEEEe
Q 011553 186 PLESYADIG-G--LDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-----SATFLRVV 257 (483)
Q Consensus 186 ~~~~~~di~-G--l~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l-----~~~~~~v~ 257 (483)
|..+|++.+ | ...+...+......+ + .....++||||+|+|||+|.+|++++. +..+++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~-~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENP----------G-ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHST----------T-TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcC----------C-CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 445677753 4 444455555544432 1 122349999999999999999999864 45788999
Q ss_pred chHHHhhhcCCch-HHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEE
Q 011553 258 GSELIQKYLGDGP-KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILA 336 (483)
Q Consensus 258 ~~~l~~~~~g~~~-~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~t 336 (483)
+.++...+..... ..+..+....+ ...+|+||+++.+.. ....+..+..+++.+.. .+.. +|+|
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~---------~~~~q~~lf~l~n~~~~---~~k~-li~t 136 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAG---------KQRTQEELFHLFNRLIE---SGKQ-LILT 136 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTT---------HHHHHHHHHHHHHHHHH---TTSE-EEEE
T ss_pred HHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcC---------chHHHHHHHHHHHHHHh---hCCe-EEEE
Confidence 9888765543221 11222222222 346999999999842 34567888888876542 3343 5555
Q ss_pred e-CCCCC---CChhhcCCCccce--EEEcCCCCHHHHHHHHHHHHcCCCCCcc
Q 011553 337 T-NRIES---LDPALLRPGRIDR--KIEFPLPDIKTRRRIFQIHTSRMTLADD 383 (483)
Q Consensus 337 t-n~~~~---ld~allr~gR~~~--~i~~~~P~~~~r~~Il~~~~~~~~~~~~ 383 (483)
+ ..|.. +++.|.+ ||.. .+.+..|+.++|..|++.......+.-+
T Consensus 137 s~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~ 187 (219)
T PF00308_consen 137 SDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELP 187 (219)
T ss_dssp ESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-
T ss_pred eCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCc
Confidence 5 44554 4577888 8754 8999999999999999988877665543
No 149
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.45 E-value=8.7e-13 Score=138.31 Aligned_cols=191 Identities=18% Similarity=0.266 Sum_probs=139.1
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCce-------EE
Q 011553 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATF-------LR 255 (483)
Q Consensus 183 ~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~-------~~ 255 (483)
.++++.+|+|++|++.+...|..++..- +...+.||.||.|||||++||.+|+.+++.- ..
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~ 75 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGK 75 (515)
T ss_pred HHhCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchh
Confidence 4678899999999999999999999862 4466799999999999999999999887631 11
Q ss_pred E-echHHHhh-h---------cCCchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHH
Q 011553 256 V-VGSELIQK-Y---------LGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLN 320 (483)
Q Consensus 256 v-~~~~l~~~-~---------~g~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~ 320 (483)
. .|-++... + ...+-..+|.+.+.+... ...|++|||++.| . ...++.||.
T Consensus 76 C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-----------S---~~afNALLK 141 (515)
T COG2812 76 CISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-----------S---KQAFNALLK 141 (515)
T ss_pred hhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-----------h---HHHHHHHhc
Confidence 0 11111110 1 112334567777666542 3459999999888 2 345566666
Q ss_pred hccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhh
Q 011553 321 QLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGAD 400 (483)
Q Consensus 321 ~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~ 400 (483)
.++. +...|+||++|..++.+++.+++ |+. .+.|..-+.++....+...+....+.-+.+.-.+.+.....+.+|
T Consensus 142 TLEE--PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RD 216 (515)
T COG2812 142 TLEE--PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRD 216 (515)
T ss_pred cccc--CccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhh
Confidence 6654 46789999999999999999999 996 899999999999999998888888776666444444444444555
Q ss_pred HHHH
Q 011553 401 IKTR 404 (483)
Q Consensus 401 i~~~ 404 (483)
...+
T Consensus 217 alsl 220 (515)
T COG2812 217 ALSL 220 (515)
T ss_pred HHHH
Confidence 4444
No 150
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.44 E-value=2.5e-12 Score=144.57 Aligned_cols=165 Identities=22% Similarity=0.330 Sum_probs=118.3
Q ss_pred ccccccHHHHHHHHHHHhcCCCChhhhhhhCC---CCCCc-eEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHh
Q 011553 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGI---KPPKG-VILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQ 263 (483)
Q Consensus 191 ~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~---~~~~g-vLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~ 263 (483)
..|+|++.+++.+.+.+.... .|+ ..|.+ +||+||||||||.+|+++|..+ ...|+.++++++..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTAR--------AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHh--------cCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 468999999999999886531 122 12444 8999999999999999999988 35889999988754
Q ss_pred h-----hcCCchHHH-----HHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcC------
Q 011553 264 K-----YLGDGPKLV-----RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS------ 327 (483)
Q Consensus 264 ~-----~~g~~~~~i-----~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~------ 327 (483)
. .+|..++.+ ..+....+....+||+||||+++ +.+....|+++++.-.-.+.
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka-----------~~~v~~~Llq~ld~g~l~d~~Gr~vd 706 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA-----------HPDVLELFYQVFDKGVMEDGEGREID 706 (852)
T ss_pred hhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhc-----------CHHHHHHHHHHhhcceeecCCCcEEe
Confidence 2 223222221 12334445567799999999987 66788888888875321111
Q ss_pred CCCeEEEEEeCCCC-----------------------------CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcC
Q 011553 328 RGDVKVILATNRIE-----------------------------SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR 377 (483)
Q Consensus 328 ~~~v~vI~ttn~~~-----------------------------~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~ 377 (483)
-.+++||+|||... .+.|+|++ |++ +|.|.+.+.++...|+...+..
T Consensus 707 ~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 707 FKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred ccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 14789999998521 15577777 897 8899999999999999877654
No 151
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.44 E-value=8.6e-13 Score=136.54 Aligned_cols=154 Identities=25% Similarity=0.410 Sum_probs=110.0
Q ss_pred CCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC---ceEEEechHHHhh
Q 011553 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA---TFLRVVGSELIQK 264 (483)
Q Consensus 188 ~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~---~~~~v~~~~l~~~ 264 (483)
..+.+++|.+..++++.+.+..- ......|||+|++||||.++|++|+....+ ||+.+||..+...
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 46778999999999999988652 345667999999999999999999998764 9999999765432
Q ss_pred ---------hcCCchHH---HHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc--CCcC---
Q 011553 265 ---------YLGDGPKL---VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD--GFDS--- 327 (483)
Q Consensus 265 ---------~~g~~~~~---i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~--~~~~--- 327 (483)
-.|...+. -...|+.|.. ++||||||..| ..+.|..|+.+|++-. .+..
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~~~~ 272 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGGNKP 272 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCCCcc
Confidence 11111111 1224555444 79999999888 7889999999998522 1111
Q ss_pred -CCCeEEEEEeCCC--CC-----CChhhcCCCccceEEEcCCCCHHHHHH
Q 011553 328 -RGDVKVILATNRI--ES-----LDPALLRPGRIDRKIEFPLPDIKTRRR 369 (483)
Q Consensus 328 -~~~v~vI~ttn~~--~~-----ld~allr~gR~~~~i~~~~P~~~~r~~ 369 (483)
.-+|.||++||+. +. +-+.|.. |+. ++.+..|...+|.+
T Consensus 273 i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~E 319 (464)
T COG2204 273 IKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKE 319 (464)
T ss_pred cceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccch
Confidence 2379999999872 12 2233433 553 88888898888876
No 152
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.43 E-value=3.5e-12 Score=138.58 Aligned_cols=146 Identities=23% Similarity=0.270 Sum_probs=90.0
Q ss_pred EEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc----CC------------cCCCCeEEEEEeCCC--CCCChhhc
Q 011553 287 IVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD----GF------------DSRGDVKVILATNRI--ESLDPALL 348 (483)
Q Consensus 287 Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~----~~------------~~~~~v~vI~ttn~~--~~ld~all 348 (483)
+|||||++.| ..+.|..|+++|+.-. +. .-.-++.+|+++|.. ..++++|+
T Consensus 220 tL~Ldei~~L-----------~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~ 288 (608)
T TIGR00764 220 VLYIDEIKTM-----------PLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALR 288 (608)
T ss_pred EEEEEChHhC-----------CHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHH
Confidence 6666666666 4567888888886421 11 012368999999863 57899999
Q ss_pred CCCccc---eEEEcCC--C-CHHHHHHHHHHHHc---CCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccc
Q 011553 349 RPGRID---RKIEFPL--P-DIKTRRRIFQIHTS---RMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLAD 419 (483)
Q Consensus 349 r~gR~~---~~i~~~~--P-~~~~r~~Il~~~~~---~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~ 419 (483)
+ ||+ ..+.|+. | +.+.+..+++.... ..... ..++...+..+.+.+...
T Consensus 289 ~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l------------~~~s~~Av~~Li~~~~R~-------- 346 (608)
T TIGR00764 289 S--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRI------------PHFTRDAVEEIVREAQRR-------- 346 (608)
T ss_pred H--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCC------------CcCCHHHHHHHHHHHHHH--------
Confidence 9 998 6666643 3 45555555443222 11111 123333343333222211
Q ss_pred cCCHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhh
Q 011553 420 DVNLEEFVMTKD--EFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFK 472 (483)
Q Consensus 420 ~~~l~~la~~~~--g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~ 472 (483)
+.... -.+.++|.++|++|...|..+++..|+.+|+.+|++...+.
T Consensus 347 -------ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~~ 394 (608)
T TIGR00764 347 -------AGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKTL 394 (608)
T ss_pred -------HhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHHH
Confidence 11111 24579999999999888877888999999999998876553
No 153
>PRK06620 hypothetical protein; Validated
Probab=99.43 E-value=7.9e-12 Score=118.85 Aligned_cols=197 Identities=17% Similarity=0.210 Sum_probs=116.9
Q ss_pred CCCCCccccc-c--cHHHHHHHHHHHhcCCCChhhhhhhCCCC-CCceEEEcCCCCchHHHHHHHHHHcCCceEEEechH
Q 011553 185 APLESYADIG-G--LDAQIQEIKEAVELPLTHPELYEDIGIKP-PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSE 260 (483)
Q Consensus 185 ~~~~~~~di~-G--l~~~~~~l~e~i~~pl~~~~~~~~~g~~~-~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~ 260 (483)
.+..+|++++ | ...+...+.+....| +..+ .+.++||||||||||+|++++|+..+..++. ...
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~----------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~ 77 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGF----------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF 77 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHcc----------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh
Confidence 3445666643 3 334555555554322 1222 2569999999999999999999988764432 111
Q ss_pred HHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCC
Q 011553 261 LIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (483)
Q Consensus 261 l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~ 340 (483)
. ....+ ....+|+|||||.+ . ...+..+++.+.. .+..++|+++..|
T Consensus 78 ~-----------~~~~~-----~~~d~lliDdi~~~-----------~---~~~lf~l~N~~~e---~g~~ilits~~~p 124 (214)
T PRK06620 78 F-----------NEEIL-----EKYNAFIIEDIENW-----------Q---EPALLHIFNIINE---KQKYLLLTSSDKS 124 (214)
T ss_pred h-----------chhHH-----hcCCEEEEeccccc-----------h---HHHHHHHHHHHHh---cCCEEEEEcCCCc
Confidence 1 01111 12369999999855 1 1345566655432 3456666666555
Q ss_pred CCCC-hhhcCCCccc--eEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccc
Q 011553 341 ESLD-PALLRPGRID--RKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTL 417 (483)
Q Consensus 341 ~~ld-~allr~gR~~--~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~ 417 (483)
..+. ++|++ |+. .++.+..|+.+++..+++.++....+.-+
T Consensus 125 ~~l~l~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~---------------------------------- 168 (214)
T PRK06620 125 RNFTLPDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTIS---------------------------------- 168 (214)
T ss_pred cccchHHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC----------------------------------
Confidence 5422 88888 885 37999999999999999887764333221
Q ss_pred cccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 011553 418 ADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAK 466 (483)
Q Consensus 418 ~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al 466 (483)
+...+.++....+ +.+.+..++...-..+...+ ..||.+.+++++
T Consensus 169 --~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 169 --RQIIDFLLVNLPR-EYSKIIEILENINYFALISK-RKITISLVKEVL 213 (214)
T ss_pred --HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHh
Confidence 1123334444332 44566666665433343333 468888887765
No 154
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.42 E-value=5.9e-12 Score=142.38 Aligned_cols=166 Identities=23% Similarity=0.381 Sum_probs=119.5
Q ss_pred cccccccHHHHHHHHHHHhcCCCChhhhhhhCC----CCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHH
Q 011553 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGI----KPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELI 262 (483)
Q Consensus 190 ~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~----~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~ 262 (483)
...|+|++.+++.+...+... ..|+ .+...+||+||||||||++|+++|..+ +.+|++++++++.
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~ 635 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYM 635 (852)
T ss_pred hcccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhc
Confidence 456899999999999988752 1121 233459999999999999999999987 3589999998764
Q ss_pred h-----hhcCCchHH-----HHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCc------
Q 011553 263 Q-----KYLGDGPKL-----VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD------ 326 (483)
Q Consensus 263 ~-----~~~g~~~~~-----i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~------ 326 (483)
. ...|..++. ...+....+....+||+||||+++ +.+.+..|++++++-.-..
T Consensus 636 ~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----------~~~v~~~Ll~~l~~g~l~d~~g~~v 704 (852)
T TIGR03346 636 EKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----------HPDVFNVLLQVLDDGRLTDGQGRTV 704 (852)
T ss_pred ccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------CHHHHHHHHHHHhcCceecCCCeEE
Confidence 3 223322221 122333444455579999999988 6788999999997532111
Q ss_pred CCCCeEEEEEeCCCC-------------------------CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHc
Q 011553 327 SRGDVKVILATNRIE-------------------------SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS 376 (483)
Q Consensus 327 ~~~~v~vI~ttn~~~-------------------------~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~ 376 (483)
+-.+++||+|||... .+.|.|+. |++.++.|.+++.+...+|+...+.
T Consensus 705 d~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 705 DFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred ecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 124688999999721 14466777 9999999999999999999987764
No 155
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.41 E-value=6.1e-13 Score=135.89 Aligned_cols=155 Identities=26% Similarity=0.441 Sum_probs=108.2
Q ss_pred CCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC---ceEEEechHHHh
Q 011553 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA---TFLRVVGSELIQ 263 (483)
Q Consensus 187 ~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~---~~~~v~~~~l~~ 263 (483)
...+..|+|.+.++.++.+.|..- +.....|||.|.+||||..+||+|+...++ ||+.+||+.+..
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 346778999999999999988762 455677999999999999999999998764 999999976543
Q ss_pred hh---------cCCchHHH---HHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc--CCcCC-
Q 011553 264 KY---------LGDGPKLV---RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD--GFDSR- 328 (483)
Q Consensus 264 ~~---------~g~~~~~i---~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~--~~~~~- 328 (483)
.. .|...+.+ ..-|+.|.. +.||+|||..| ...+|..|+.+|++-+ .+...
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~~r 353 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGGDR 353 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCC---CeEechhhccC-----------CHHHHHHHHHHHhhcceeecCCCc
Confidence 22 22222211 123444433 69999999888 7789999999998632 22111
Q ss_pred ---CCeEEEEEeCCCCCCChhhcC----CC---ccceEEEcCCCCHHHHHH
Q 011553 329 ---GDVKVILATNRIESLDPALLR----PG---RIDRKIEFPLPDIKTRRR 369 (483)
Q Consensus 329 ---~~v~vI~ttn~~~~ld~allr----~g---R~~~~i~~~~P~~~~r~~ 369 (483)
-+|.||++||+ +|...+.. .. |+. ++.+..|...+|..
T Consensus 354 ~ikVDVRiIAATNR--DL~~~V~~G~FRaDLYyRLs-V~Pl~lPPLRER~~ 401 (550)
T COG3604 354 TIKVDVRVIAATNR--DLEEMVRDGEFRADLYYRLS-VFPLELPPLRERPE 401 (550)
T ss_pred eeEEEEEEEeccch--hHHHHHHcCcchhhhhhccc-ccccCCCCcccCCc
Confidence 26999999997 22222221 11 333 66667788877764
No 156
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.40 E-value=8.9e-12 Score=135.17 Aligned_cols=222 Identities=20% Similarity=0.265 Sum_probs=139.4
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCC--ceEEEechHHHhhhcCCchHHHHHHHHHH---------hhcCCeEEEEcCCc
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSELIQKYLGDGPKLVRELFRVA---------DDLSPSIVFIDEID 294 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~~~~l~~~~~g~~~~~i~~~f~~a---------~~~~p~Il~iDEiD 294 (483)
.+|||.|+||||||++|++++..++. +|+++.........+|... +...+... .....++||||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~id--l~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGID--VEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchh--hhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 46999999999999999999998764 6888875322233333210 00001100 01223699999999
Q ss_pred cccccccCCCCCChHHHHHHHHHHHHhcc------CCc--CCCCeEEEEEeCCCC---CCChhhcCCCccceEEEcC-CC
Q 011553 295 AVGTKRYDAHSGGEREIQRTMLELLNQLD------GFD--SRGDVKVILATNRIE---SLDPALLRPGRIDRKIEFP-LP 362 (483)
Q Consensus 295 ~l~~~r~~~~~~~~~~~~~~l~~lL~~l~------~~~--~~~~v~vI~ttn~~~---~ld~allr~gR~~~~i~~~-~P 362 (483)
.+ +...+..|+++|++-. +.. ...++.||+|+|..+ .++++|++ ||..++.+. .|
T Consensus 95 rl-----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~ 161 (589)
T TIGR02031 95 LL-----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVA 161 (589)
T ss_pred hC-----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCC
Confidence 98 6778899999887432 211 124689999988765 68899999 999877776 46
Q ss_pred CHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhc--CCCCC-HHHHH
Q 011553 363 DIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMT--KDEFS-GADIK 439 (483)
Q Consensus 363 ~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~--~~g~s-~~di~ 439 (483)
+.++|.+|++..+......... ..-....+|..+ +.....+.+.+.+ +..++.. .-|.+ .+.-.
T Consensus 162 ~~~er~eil~~~~~~~~~~~~~--------~~~~~~~~i~~a----r~~~~~V~i~~~~-~~~l~~~~~~~gv~s~Ra~i 228 (589)
T TIGR02031 162 SQDLRVEIVRRERCNEVFRMND--------ELELLRGQIEAA----RELLPQVTISAEQ-VKELVLTAASLGISGHRADL 228 (589)
T ss_pred CHHHHHHHHHHHHHhhhhhcch--------hhHHHHHHHHHH----HHhcCCccCCHHH-HHHHHHHHHHcCCCCccHHH
Confidence 7888999998876321100000 001112222222 2222222222221 1222211 22333 45666
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhccC
Q 011553 440 AICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 475 (483)
Q Consensus 440 ~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~~~ 475 (483)
.+++-|...|..+++..|+.+|+..|+.-++.....
T Consensus 229 ~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl~hR~~ 264 (589)
T TIGR02031 229 FAVRAAKAHAALHGRTEVTEEDLKLAVELVLLPRAT 264 (589)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhcc
Confidence 788999999999999999999999999999976553
No 157
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.39 E-value=4.3e-12 Score=143.04 Aligned_cols=166 Identities=24% Similarity=0.356 Sum_probs=118.7
Q ss_pred ccccccHHHHHHHHHHHhcCCCChhhhhhhCC----CCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHHHh
Q 011553 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGI----KPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQ 263 (483)
Q Consensus 191 ~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~----~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l~~ 263 (483)
..|+|++.+++.|..++... ..|+ ++..++||+||+|||||+||+++|+.+. .++++++++++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 45889999999999988642 1222 1223489999999999999999999873 5899999887643
Q ss_pred -----hhcCCchHH-----HHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCc------C
Q 011553 264 -----KYLGDGPKL-----VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD------S 327 (483)
Q Consensus 264 -----~~~g~~~~~-----i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~------~ 327 (483)
...|..++. ...+....+....+||+|||+|++ +.+.+..|++++++-.-.. +
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----------~~~v~~~Llq~le~g~~~d~~g~~v~ 649 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----------HPDIFNLLLQILDDGRLTDSKGRTID 649 (821)
T ss_pred cccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----------CHHHHHHHHHHhccCceecCCCcEEe
Confidence 223322211 123445555555689999999988 6778899999887532111 1
Q ss_pred CCCeEEEEEeCCCCC-------------------------------------CChhhcCCCccceEEEcCCCCHHHHHHH
Q 011553 328 RGDVKVILATNRIES-------------------------------------LDPALLRPGRIDRKIEFPLPDIKTRRRI 370 (483)
Q Consensus 328 ~~~v~vI~ttn~~~~-------------------------------------ld~allr~gR~~~~i~~~~P~~~~r~~I 370 (483)
-.+++||+|||.... +.|.|+. |++.+|.|.+.+.++...|
T Consensus 650 ~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~I 727 (821)
T CHL00095 650 FKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEI 727 (821)
T ss_pred cCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHH
Confidence 247999999985211 2356777 9988999999999999999
Q ss_pred HHHHHcC
Q 011553 371 FQIHTSR 377 (483)
Q Consensus 371 l~~~~~~ 377 (483)
+...+..
T Consensus 728 v~~~l~~ 734 (821)
T CHL00095 728 AEIMLKN 734 (821)
T ss_pred HHHHHHH
Confidence 8877654
No 158
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.39 E-value=4.7e-12 Score=133.63 Aligned_cols=235 Identities=17% Similarity=0.213 Sum_probs=136.6
Q ss_pred CCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc--eEEEechHHH---
Q 011553 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT--FLRVVGSELI--- 262 (483)
Q Consensus 188 ~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~--~~~v~~~~l~--- 262 (483)
..|.++.|...+++.+.-. +.....++|+||||||||+|++.++..+... -..+.++.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~la---------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT---------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred cCeEEEECcHHHHhhhhee---------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 4788889988777664322 2335679999999999999999999754310 0001111110
Q ss_pred -----------------------hhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHH
Q 011553 263 -----------------------QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELL 319 (483)
Q Consensus 263 -----------------------~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL 319 (483)
...+|.....-...+..|.. ++|||||++.+ +...+..|.+.|
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----------~~~~~~~L~~~L 318 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----------ERRTLDALREPI 318 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----------CHHHHHHHHHHH
Confidence 01122211111233444443 69999999887 567788888888
Q ss_pred Hhcc----C----CcCCCCeEEEEEeCCCC---------------------CCChhhcCCCccceEEEcCCCCHHHHHHH
Q 011553 320 NQLD----G----FDSRGDVKVILATNRIE---------------------SLDPALLRPGRIDRKIEFPLPDIKTRRRI 370 (483)
Q Consensus 320 ~~l~----~----~~~~~~v~vI~ttn~~~---------------------~ld~allr~gR~~~~i~~~~P~~~~r~~I 370 (483)
+.-. . ..-..++.+|+|+|... .++.++++ ||+..+.++.|+.++..
T Consensus 319 E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~-- 394 (506)
T PRK09862 319 ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILS-- 394 (506)
T ss_pred HcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHh--
Confidence 5321 1 11134789999999742 37778999 99999999999876221
Q ss_pred HHHHHcCCCCCcccchH-------HHHhh-----ccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHH
Q 011553 371 FQIHTSRMTLADDVNLE-------EFVMT-----KDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADI 438 (483)
Q Consensus 371 l~~~~~~~~~~~~~~l~-------~la~~-----t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di 438 (483)
..... -.....+. ++... ...++..++..++..... ...+-.-+....++|.|..
T Consensus 395 --~~~~~--~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~---------~~~~l~~~~~~~~lS~Ra~ 461 (506)
T PRK09862 395 --KTVVP--GESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESE---------DARWLEETLIHLGLSIRAW 461 (506)
T ss_pred --cccCC--CCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHH---------HHHHHHHHHHHcCCCHHHH
Confidence 10000 00111111 00000 001111111111110000 0111111234457899999
Q ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 011553 439 KAICTEAGLLALRERRMKVTHTDFKKAKEK 468 (483)
Q Consensus 439 ~~l~~~A~~~A~~~~~~~it~ed~~~Al~~ 468 (483)
..+++-|...|..+++..|+.+|+.+|+..
T Consensus 462 ~rlLrvARTiADL~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 462 QRLLKVARTIADIDQSDIITRQHLQEAVSY 491 (506)
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 999999999999999999999999999874
No 159
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.38 E-value=1.4e-11 Score=139.01 Aligned_cols=168 Identities=24% Similarity=0.369 Sum_probs=118.2
Q ss_pred CcccccccHHHHHHHHHHHhcCCCChhhhhhhCCC---CC-CceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHH
Q 011553 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIK---PP-KGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSEL 261 (483)
Q Consensus 189 ~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~---~~-~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l 261 (483)
....|+|++.+++.|...+... ..|+. .| ..+||+||+|||||++|+++|..+ +.+|++++++++
T Consensus 566 l~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~ 637 (857)
T PRK10865 566 LHHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEF 637 (857)
T ss_pred hCCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHh
Confidence 4557899999999999988652 11222 12 358999999999999999999987 357999999887
Q ss_pred Hhh-----hcCCchHHH-----HHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCc-----
Q 011553 262 IQK-----YLGDGPKLV-----RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD----- 326 (483)
Q Consensus 262 ~~~-----~~g~~~~~i-----~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~----- 326 (483)
... .+|..+..+ ..+....+....+||+|||++.+ +.+.+..|+++++.-.-..
T Consensus 638 ~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----------~~~v~~~Ll~ile~g~l~d~~gr~ 706 (857)
T PRK10865 638 MEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----------HPDVFNILLQVLDDGRLTDGQGRT 706 (857)
T ss_pred hhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----------CHHHHHHHHHHHhhCceecCCceE
Confidence 542 223221111 11222333344489999999987 6778899999887421111
Q ss_pred -CCCCeEEEEEeCCC-------------------------CCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcC
Q 011553 327 -SRGDVKVILATNRI-------------------------ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR 377 (483)
Q Consensus 327 -~~~~v~vI~ttn~~-------------------------~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~ 377 (483)
.-.+.+||+|||.. ..+.|+|+. |++.++.|.+++.++...|++.++..
T Consensus 707 vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 707 VDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred EeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 12356799999872 125578888 99999999999999999998877654
No 160
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.36 E-value=2.6e-12 Score=137.08 Aligned_cols=162 Identities=22% Similarity=0.352 Sum_probs=108.1
Q ss_pred CCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhh
Q 011553 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQK 264 (483)
Q Consensus 188 ~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~ 264 (483)
.+|++|+|.+..++++.+.+... ......|||+|++||||+++|++|++.. +.||+.++|..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 57889999999999998888642 2345679999999999999999999865 459999999866431
Q ss_pred -----hcCCch--------HHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCC--c---
Q 011553 265 -----YLGDGP--------KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF--D--- 326 (483)
Q Consensus 265 -----~~g~~~--------~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~--~--- 326 (483)
..|... ..-..+|+.|. .++||||||+.| +...|..|+.+|++-... .
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----------p~~~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM-----------PLPLQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC-----------CHHHHHHHHHHHhcCcEEecCCCc
Confidence 111110 01123444443 379999999999 678899999999753211 0
Q ss_pred -CCCCeEEEEEeCCCC--C-----CChhhcCCCccceEEEcCCCCHHHHHH----HHHHHHcC
Q 011553 327 -SRGDVKVILATNRIE--S-----LDPALLRPGRIDRKIEFPLPDIKTRRR----IFQIHTSR 377 (483)
Q Consensus 327 -~~~~v~vI~ttn~~~--~-----ld~allr~gR~~~~i~~~~P~~~~r~~----Il~~~~~~ 377 (483)
...++.+|++||..- . +.+.|.. |+. .+.+..|...+|.+ ++..++..
T Consensus 344 ~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~ 403 (526)
T TIGR02329 344 PVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLS-ILRIALPPLRERPGDILPLAAEYLVQ 403 (526)
T ss_pred eeeecceEEeccCCCHHHHhhhcchhHHHHH--hcC-CcEEeCCCchhchhHHHHHHHHHHHH
Confidence 123578999997631 1 2233333 443 45666666666654 44455543
No 161
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.35 E-value=4.3e-12 Score=135.29 Aligned_cols=161 Identities=24% Similarity=0.372 Sum_probs=108.1
Q ss_pred CCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHH-----------cCCceEEE
Q 011553 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANS-----------TSATFLRV 256 (483)
Q Consensus 188 ~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~-----------l~~~~~~v 256 (483)
.+|++|+|.+..++++.+.+... ......|||+|++||||+++|++|++. .+.||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 46889999999999999888652 234567999999999999999999987 34699999
Q ss_pred echHHHhh-----hcCCch--------HHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc
Q 011553 257 VGSELIQK-----YLGDGP--------KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD 323 (483)
Q Consensus 257 ~~~~l~~~-----~~g~~~--------~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~ 323 (483)
+|+.+... ..|... ..-..+|+.|. .++||||||+.| ....|..|+.+|++-.
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----------p~~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEM-----------PLPLQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhC-----------CHHHHHHHHhhhhcCe
Confidence 99876432 111110 01112444443 379999999999 6788999999997532
Q ss_pred CC--c----CCCCeEEEEEeCCCC--C-----CChhhcCCCccceEEEcCCCCHHHHHH----HHHHHHc
Q 011553 324 GF--D----SRGDVKVILATNRIE--S-----LDPALLRPGRIDRKIEFPLPDIKTRRR----IFQIHTS 376 (483)
Q Consensus 324 ~~--~----~~~~v~vI~ttn~~~--~-----ld~allr~gR~~~~i~~~~P~~~~r~~----Il~~~~~ 376 (483)
-. . ...++.+|++||..- . +.+.|.. |+. .+.+..|...+|.+ ++..++.
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~-~~~I~lPPLReR~eDI~~L~~~fl~ 417 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLS-ILRLQLPPLRERVADILPLAESFLK 417 (538)
T ss_pred EEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--Hhc-CCeecCCChhhchhHHHHHHHHHHH
Confidence 11 0 123679999998631 1 2223333 443 56677777777764 4444444
No 162
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.34 E-value=7.1e-11 Score=120.71 Aligned_cols=162 Identities=21% Similarity=0.330 Sum_probs=110.2
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcC-----CceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCcccccc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTS-----ATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTK 299 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~-----~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~ 299 (483)
...++||||.|+|||+|++|+++... ..+++++...+...++......-.+-|+.-. +-.+++||||+.+..+
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 44599999999999999999999763 3688888888877766443332233455444 3469999999998543
Q ss_pred ccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC-CCC---CChhhcCCCccce--EEEcCCCCHHHHHHHHHH
Q 011553 300 RYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR-IES---LDPALLRPGRIDR--KIEFPLPDIKTRRRIFQI 373 (483)
Q Consensus 300 r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~-~~~---ld~allr~gR~~~--~i~~~~P~~~~r~~Il~~ 373 (483)
. ..+..++.+++.+.. .++ .+|+|+.+ |.. +.+.|.+ ||.. ++.+.+|+.+.|..|++.
T Consensus 191 ~---------~~qeefFh~FN~l~~---~~k-qIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 191 E---------RTQEEFFHTFNALLE---NGK-QIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred h---------hHHHHHHHHHHHHHh---cCC-EEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHH
Confidence 2 346666666665533 233 46666644 555 4488988 8864 888999999999999998
Q ss_pred HHcCCCCCcccchHHHHhhccccchhhHHH
Q 011553 374 HTSRMTLADDVNLEEFVMTKDEFSGADIKT 403 (483)
Q Consensus 374 ~~~~~~~~~~~~l~~la~~t~g~~~~~i~~ 403 (483)
.....++.-+.+...+....-.-+.+++..
T Consensus 256 ka~~~~~~i~~ev~~~la~~~~~nvReLeg 285 (408)
T COG0593 256 KAEDRGIEIPDEVLEFLAKRLDRNVRELEG 285 (408)
T ss_pred HHHhcCCCCCHHHHHHHHHHhhccHHHHHH
Confidence 777666665555444444433333444433
No 163
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.34 E-value=3.4e-12 Score=129.08 Aligned_cols=149 Identities=23% Similarity=0.337 Sum_probs=98.9
Q ss_pred ccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHHHhhh----
Q 011553 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQKY---- 265 (483)
Q Consensus 193 i~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l~~~~---- 265 (483)
|+|.+..++.+.+.+... ......|||+|++||||+++|++|+.... .+|+.++|+.+....
T Consensus 1 liG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH
Confidence 357777777777766542 23456699999999999999999998664 599999998653211
Q ss_pred -cCCch-------HHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccC--C----cCCCCe
Q 011553 266 -LGDGP-------KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG--F----DSRGDV 331 (483)
Q Consensus 266 -~g~~~-------~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~--~----~~~~~v 331 (483)
.|... .....+|..|. .++||||||+.| +.+.|..|+.+|+.-.. . ....++
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATA-----------SLLVQEKLLRVIEYGEFERVGGSQTLQVDV 135 (329)
T ss_pred HhccccccccCcccccCCchhhCC---CCEEEeCChHhC-----------CHHHHHHHHHHHHcCcEEecCCCceeccce
Confidence 11110 00112244333 479999999999 67889999999874221 0 112468
Q ss_pred EEEEEeCCC-------CCCChhhcCCCccceEEEcCCCCHHHHHH
Q 011553 332 KVILATNRI-------ESLDPALLRPGRIDRKIEFPLPDIKTRRR 369 (483)
Q Consensus 332 ~vI~ttn~~-------~~ld~allr~gR~~~~i~~~~P~~~~r~~ 369 (483)
.+|++|+.. ..+.+.|.. |+. .+.+..|...+|.+
T Consensus 136 RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~e 177 (329)
T TIGR02974 136 RLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQE 177 (329)
T ss_pred EEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhh
Confidence 999999763 234456665 664 46667777777654
No 164
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.33 E-value=5.9e-11 Score=125.77 Aligned_cols=209 Identities=22% Similarity=0.276 Sum_probs=140.2
Q ss_pred ceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhh----hh-------------------CCCCCCceEEEcCCC
Q 011553 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYE----DI-------------------GIKPPKGVILYGEPG 235 (483)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~----~~-------------------g~~~~~gvLL~GppG 235 (483)
.+|++++.+..|.|+.|-+.+-+.+..++..+ .+.+|. ++ +-+..+-+||+||||
T Consensus 259 kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~W--D~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppG 336 (877)
T KOG1969|consen 259 KLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQW--DPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPG 336 (877)
T ss_pred ceeecccChhHHHHHhcchhHHHHHHHHHHhh--cHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCC
Confidence 48999999999999999999999988887643 444444 11 112234489999999
Q ss_pred CchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhh--------cCCeEEEEcCCccccccccCCCCCC
Q 011553 236 TGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADD--------LSPSIVFIDEIDAVGTKRYDAHSGG 307 (483)
Q Consensus 236 tGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~--------~~p~Il~iDEiD~l~~~r~~~~~~~ 307 (483)
-||||||+-||++.|..++.|++++-. +...++..+..|-. .+|..|+|||||--
T Consensus 337 lGKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa----------- 399 (877)
T KOG1969|consen 337 LGKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA----------- 399 (877)
T ss_pred CChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccCC-----------
Confidence 999999999999999999999998732 22333333333322 46889999999743
Q ss_pred hHHHHHHHHHHHHhc----cCCcC---------C---CCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHH
Q 011553 308 EREIQRTMLELLNQL----DGFDS---------R---GDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF 371 (483)
Q Consensus 308 ~~~~~~~l~~lL~~l----~~~~~---------~---~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il 371 (483)
......+++.++..- .+-.. + -.-.|||.||.. .-|+|+.---|..+|.|.+|......+=|
T Consensus 400 ~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL 477 (877)
T KOG1969|consen 400 PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVERL 477 (877)
T ss_pred cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHHH
Confidence 455667777776621 11100 0 013588888853 34666432147789999999988888878
Q ss_pred HHHHcCCCCCccc-chHHHHhhccccchhhHHHHHHHHHHhh
Q 011553 372 QIHTSRMTLADDV-NLEEFVMTKDEFSGADIKTRRRIFQIHT 412 (483)
Q Consensus 372 ~~~~~~~~~~~~~-~l~~la~~t~g~~~~~i~~~~r~~~~~~ 412 (483)
+..+...++..+. .+..|+. ++..||+.-+..+|-..
T Consensus 478 ~~IC~rE~mr~d~~aL~~L~e----l~~~DIRsCINtLQfLa 515 (877)
T KOG1969|consen 478 NEICHRENMRADSKALNALCE----LTQNDIRSCINTLQFLA 515 (877)
T ss_pred HHHHhhhcCCCCHHHHHHHHH----HhcchHHHHHHHHHHHH
Confidence 8777666654332 2444443 44567777666666433
No 165
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=2.8e-11 Score=123.84 Aligned_cols=159 Identities=17% Similarity=0.137 Sum_probs=114.1
Q ss_pred CCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceE-----------
Q 011553 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFL----------- 254 (483)
Q Consensus 186 ~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~----------- 254 (483)
.+.++++|+|.+.+++.|..++.. -..+.++||+||+|+||+++|.++|+.+-+.--
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 456889999999999999998876 255778999999999999999999997743100
Q ss_pred ----EEech---HHHh-h-----hc-----CC--------chHHHHHHHHHHh----hcCCeEEEEcCCccccccccCCC
Q 011553 255 ----RVVGS---ELIQ-K-----YL-----GD--------GPKLVRELFRVAD----DLSPSIVFIDEIDAVGTKRYDAH 304 (483)
Q Consensus 255 ----~v~~~---~l~~-~-----~~-----g~--------~~~~i~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~ 304 (483)
.-.|. .+.. . ++ +. .-..++.+...+. ...+.|++|||+|.+
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------- 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------- 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence 00011 1100 0 00 10 1233555544433 235679999999998
Q ss_pred CCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHH
Q 011553 305 SGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHT 375 (483)
Q Consensus 305 ~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~ 375 (483)
+...++.|+..+.+ +..+++||++|+.++.+.+.+++ |+. .+.|++|+.++...++....
T Consensus 154 ---~~~aanaLLK~LEe-----pp~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 154 ---NANAANALLKVLEE-----PPARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred ---CHHHHHHHHHHHhc-----CCCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhc
Confidence 55666777777764 34577899999999999999988 885 99999999999998888754
No 166
>PRK09087 hypothetical protein; Validated
Probab=99.33 E-value=6.8e-11 Score=113.37 Aligned_cols=173 Identities=21% Similarity=0.217 Sum_probs=105.6
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCC
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~ 305 (483)
..++|+||+|||||+|++++|+..+..|+. ...+...+ +..... .+|+|||++.+.
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~--~~~~~~~~-----------~~~~~~---~~l~iDDi~~~~-------- 100 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIH--PNEIGSDA-----------ANAAAE---GPVLIEDIDAGG-------- 100 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEec--HHHcchHH-----------HHhhhc---CeEEEECCCCCC--------
Confidence 349999999999999999999987665443 33322211 111111 489999998762
Q ss_pred CChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCC---CChhhcCCCccc--eEEEcCCCCHHHHHHHHHHHHcCCCC
Q 011553 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES---LDPALLRPGRID--RKIEFPLPDIKTRRRIFQIHTSRMTL 380 (483)
Q Consensus 306 ~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~---ld~allr~gR~~--~~i~~~~P~~~~r~~Il~~~~~~~~~ 380 (483)
.. +..+.++++.+.. .+..+||.++..|.. ..+.|++ |+. .++++..|+.++|..|++.++....+
T Consensus 101 ~~----~~~lf~l~n~~~~---~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~ 171 (226)
T PRK09087 101 FD----ETGLFHLINSVRQ---AGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQL 171 (226)
T ss_pred CC----HHHHHHHHHHHHh---CCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCC
Confidence 11 2446666655432 234444444444432 3688888 884 69999999999999999988876544
Q ss_pred CcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHH
Q 011553 381 ADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHT 460 (483)
Q Consensus 381 ~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~e 460 (483)
.-+ +..++.|+....+ +.+.+..++......++..+ ..||..
T Consensus 172 ~l~------------------------------------~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~ 213 (226)
T PRK09087 172 YVD------------------------------------PHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRA 213 (226)
T ss_pred CCC------------------------------------HHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHH
Confidence 322 1223334444332 22334444444444444433 458888
Q ss_pred HHHHHHHHH
Q 011553 461 DFKKAKEKV 469 (483)
Q Consensus 461 d~~~Al~~~ 469 (483)
.++++++.+
T Consensus 214 ~~~~~l~~~ 222 (226)
T PRK09087 214 LAAEVLNEM 222 (226)
T ss_pred HHHHHHHhh
Confidence 888888764
No 167
>PHA02244 ATPase-like protein
Probab=99.32 E-value=5.9e-11 Score=119.50 Aligned_cols=131 Identities=26% Similarity=0.294 Sum_probs=87.8
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhh---hcCCchHHHHHHHHHHhhcCCeEEEEcCCcccccccc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK---YLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRY 301 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~---~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~ 301 (483)
...|||+||||||||++|+++|..++.+|+.+++..-... +..........-|-.|. ...++|+|||++.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a----- 192 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDAS----- 192 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcC-----
Confidence 4569999999999999999999999999999975311001 11111111111222222 24579999999987
Q ss_pred CCCCCChHHHHHHHHHHHHhc-----cC-CcCCCCeEEEEEeCCC-----------CCCChhhcCCCccceEEEcCCCCH
Q 011553 302 DAHSGGEREIQRTMLELLNQL-----DG-FDSRGDVKVILATNRI-----------ESLDPALLRPGRIDRKIEFPLPDI 364 (483)
Q Consensus 302 ~~~~~~~~~~~~~l~~lL~~l-----~~-~~~~~~v~vI~ttn~~-----------~~ld~allr~gR~~~~i~~~~P~~ 364 (483)
..+.+..|..++..- ++ +....++.+|+|+|.+ ..+++++++ ||- .|+|+.|+.
T Consensus 193 ------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~ 263 (383)
T PHA02244 193 ------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEK 263 (383)
T ss_pred ------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcH
Confidence 556677777777521 11 1224579999999973 468999999 995 899999984
Q ss_pred HHHHHHH
Q 011553 365 KTRRRIF 371 (483)
Q Consensus 365 ~~r~~Il 371 (483)
....|.
T Consensus 264 -~E~~i~ 269 (383)
T PHA02244 264 -IEHLIS 269 (383)
T ss_pred -HHHHHh
Confidence 333444
No 168
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.32 E-value=7.8e-12 Score=134.97 Aligned_cols=217 Identities=21% Similarity=0.312 Sum_probs=130.5
Q ss_pred CCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHH
Q 011553 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELI 262 (483)
Q Consensus 186 ~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~ 262 (483)
+..++++++|.+..++++.+.+... ......|||+|++|||||++|++|+... +.+|+.++|..+.
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 3467889999999999998888652 2345569999999999999999999875 4599999998763
Q ss_pred hhh-----cCCchHH-------HHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCC-----
Q 011553 263 QKY-----LGDGPKL-------VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF----- 325 (483)
Q Consensus 263 ~~~-----~g~~~~~-------i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~----- 325 (483)
... .|..... ....|..+ ..++||||||+.| ....|..|+.+++.-.-.
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~~~~ 325 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI-----------SPAFQAKLLRVLQEGEFERVGGN 325 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC-----------CHHHHHHHHHHHhcCcEEECCCC
Confidence 321 1111000 00112222 3479999999999 677889999988752210
Q ss_pred -cCCCCeEEEEEeCCC-------CCCChhhcCCCccceEEEcCCCCHHHHH----HHHHHHHcCCCCCcccchHHHHhhc
Q 011553 326 -DSRGDVKVILATNRI-------ESLDPALLRPGRIDRKIEFPLPDIKTRR----RIFQIHTSRMTLADDVNLEEFVMTK 393 (483)
Q Consensus 326 -~~~~~v~vI~ttn~~-------~~ld~allr~gR~~~~i~~~~P~~~~r~----~Il~~~~~~~~~~~~~~l~~la~~t 393 (483)
....++.+|+||+.. ..+.+.|.. |+. .+.+..|...+|. .|+..++......... .
T Consensus 326 ~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~-------~- 394 (534)
T TIGR01817 326 RTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGR-------P- 394 (534)
T ss_pred ceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--Hhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCC-------C-
Confidence 011358999998753 123444544 553 4444555554443 4555554432100000 0
Q ss_pred cccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHH
Q 011553 394 DEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFK 463 (483)
Q Consensus 394 ~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~ 463 (483)
.+++. ..+..+....=--+-+++.++++.|...+ ....|+.+|+.
T Consensus 395 ~~~s~----------------------~a~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 395 LTITP----------------------SAIRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred CCCCH----------------------HHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 01111 11222332211124588899988887543 45678888875
No 169
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=1.9e-10 Score=117.11 Aligned_cols=159 Identities=18% Similarity=0.192 Sum_probs=112.0
Q ss_pred CCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC-------ceEEE--
Q 011553 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA-------TFLRV-- 256 (483)
Q Consensus 186 ~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~-------~~~~v-- 256 (483)
.+..+.+|+|.+++++.+..++... ..+..+||+||+|+|||++|+++|+.+.+ +....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 4568899999999999999998762 45667999999999999999999998755 11100
Q ss_pred --ech---HHHhh----h--cC----C---------chHHHHHHHHHHh----hcCCeEEEEcCCccccccccCCCCCCh
Q 011553 257 --VGS---ELIQK----Y--LG----D---------GPKLVRELFRVAD----DLSPSIVFIDEIDAVGTKRYDAHSGGE 308 (483)
Q Consensus 257 --~~~---~l~~~----~--~g----~---------~~~~i~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~ 308 (483)
.|. .+... + +. . ....++.+..... .....|++|||+|.| +
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-----------~ 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-----------N 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------C
Confidence 111 11000 0 00 0 1133444333322 223459999999999 5
Q ss_pred HHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHH
Q 011553 309 REIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHT 375 (483)
Q Consensus 309 ~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~ 375 (483)
...++.|+..+++ +..++++|+.|+.++.+.|.+++ |+ ..+.|++|+.++...++....
T Consensus 155 ~~aanaLLk~LEE-----pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~ 213 (351)
T PRK09112 155 RNAANAILKTLEE-----PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLG 213 (351)
T ss_pred HHHHHHHHHHHhc-----CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhh
Confidence 5556666666654 34567888888889999999988 98 599999999999999998743
No 170
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=3.2e-11 Score=117.72 Aligned_cols=85 Identities=26% Similarity=0.359 Sum_probs=62.7
Q ss_pred eEEEEcCCccccccccCCC-CCChHHHHHHHHHHHHhc-----cCCcCCCCeEEEEEe----CCCCCCChhhcCCCccce
Q 011553 286 SIVFIDEIDAVGTKRYDAH-SGGEREIQRTMLELLNQL-----DGFDSRGDVKVILAT----NRIESLDPALLRPGRIDR 355 (483)
Q Consensus 286 ~Il~iDEiD~l~~~r~~~~-~~~~~~~~~~l~~lL~~l-----~~~~~~~~v~vI~tt----n~~~~ld~allr~gR~~~ 355 (483)
+||||||||+++.+...+. .-+...+|+-|+-++.-- -|....+.++||++. ..|++|-|.| .|||+.
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPEL--QGRfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPEL--QGRFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhh--cCCCce
Confidence 4999999999987654222 223456788777776421 122334579999987 4588899999 459999
Q ss_pred EEEcCCCCHHHHHHHHH
Q 011553 356 KIEFPLPDIKTRRRIFQ 372 (483)
Q Consensus 356 ~i~~~~P~~~~r~~Il~ 372 (483)
.+++...+.++...||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999999888874
No 171
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.31 E-value=3.2e-11 Score=121.51 Aligned_cols=153 Identities=18% Similarity=0.252 Sum_probs=110.8
Q ss_pred CcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC--------ceEEEechH
Q 011553 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA--------TFLRVVGSE 260 (483)
Q Consensus 189 ~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~--------~~~~v~~~~ 260 (483)
+|++|+|++.+++.+...+.. -..++.+||+||+|+|||++|+++|+.+.+ .|+.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 588999999999999998865 245667899999999999999999997643 223332210
Q ss_pred HHhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEE
Q 011553 261 LIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILA 336 (483)
Q Consensus 261 l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~t 336 (483)
+. .-.-..++++...+.. ....|++||++|.+ +...++.|+..|++ +..++++|++
T Consensus 70 --~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----------~~~a~naLLK~LEe-----pp~~t~~il~ 129 (313)
T PRK05564 70 --KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----------TEQAQNAFLKTIEE-----PPKGVFIILL 129 (313)
T ss_pred --CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhc-----------CHHHHHHHHHHhcC-----CCCCeEEEEE
Confidence 00 1122346665554322 23459999999998 44556666666653 4567888888
Q ss_pred eCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHc
Q 011553 337 TNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS 376 (483)
Q Consensus 337 tn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~ 376 (483)
|+.++.+.+.+++ |+. .+.|+.|+.++...++...+.
T Consensus 130 ~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~ 166 (313)
T PRK05564 130 CENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYN 166 (313)
T ss_pred eCChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhc
Confidence 8889999999998 885 999999999998887776543
No 172
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.30 E-value=2.1e-11 Score=123.40 Aligned_cols=152 Identities=24% Similarity=0.309 Sum_probs=102.4
Q ss_pred cccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHHHhh--
Q 011553 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQK-- 264 (483)
Q Consensus 190 ~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l~~~-- 264 (483)
+++++|.+..++++.+.+... ...+..|||+|++||||+++|++|+.... .+|+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 556889999999988887652 24456799999999999999999998764 59999999876321
Q ss_pred ---hcCCch-------HHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCC------cCC
Q 011553 265 ---YLGDGP-------KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF------DSR 328 (483)
Q Consensus 265 ---~~g~~~-------~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~------~~~ 328 (483)
..|... ......|..+ ..++|||||||.| ....|..|+.+++.-... ...
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA-----------PMLVQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 112110 0001223333 3479999999999 667888899888642210 012
Q ss_pred CCeEEEEEeCCC-------CCCChhhcCCCccceEEEcCCCCHHHHHH
Q 011553 329 GDVKVILATNRI-------ESLDPALLRPGRIDRKIEFPLPDIKTRRR 369 (483)
Q Consensus 329 ~~v~vI~ttn~~-------~~ld~allr~gR~~~~i~~~~P~~~~r~~ 369 (483)
.++.||+||+.. ..+.+.|.. ||. .+.+..|...+|.+
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~e 184 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQS 184 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhh
Confidence 368999998763 245566766 774 44555566666654
No 173
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.30 E-value=1.6e-11 Score=135.37 Aligned_cols=155 Identities=23% Similarity=0.359 Sum_probs=103.8
Q ss_pred CCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHHHh
Q 011553 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQ 263 (483)
Q Consensus 187 ~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l~~ 263 (483)
..+|++++|.+..++++.+.+... ......|||+|++||||+++|++|++... .+|+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 457999999999999888877652 23455699999999999999999999764 5999999976532
Q ss_pred -----hhcCCc----hHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCC--cC----C
Q 011553 264 -----KYLGDG----PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF--DS----R 328 (483)
Q Consensus 264 -----~~~g~~----~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~--~~----~ 328 (483)
...|.. .......|+.| ..++||||||+.| ..+.|..|+.+|+.-... .. .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL-----------SPELQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceEE
Confidence 222211 00001123222 3479999999999 678899999988642111 10 1
Q ss_pred CCeEEEEEeCCC-------CCCChhhcCCCccceEEEcCCCCHHHHHH
Q 011553 329 GDVKVILATNRI-------ESLDPALLRPGRIDRKIEFPLPDIKTRRR 369 (483)
Q Consensus 329 ~~v~vI~ttn~~-------~~ld~allr~gR~~~~i~~~~P~~~~r~~ 369 (483)
-++.+|+||+.. ..+.+.|.. |+. .+.+..|...+|.+
T Consensus 456 ~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~-~~~i~lPpLreR~~ 500 (638)
T PRK11388 456 VDVRVIATTTADLAMLVEQNRFSRQLYY--ALH-AFEITIPPLRMRRE 500 (638)
T ss_pred eeEEEEEeccCCHHHHHhcCCChHHHhh--hhc-eeEEeCCChhhhhh
Confidence 268899999863 123333433 443 56777777777753
No 174
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.29 E-value=1.1e-11 Score=132.90 Aligned_cols=158 Identities=23% Similarity=0.372 Sum_probs=106.8
Q ss_pred cCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechH
Q 011553 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSE 260 (483)
Q Consensus 184 ~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~ 260 (483)
.....+|++++|.+..++++.+.+... ......|||+|++||||+++|++++.... .+|+.++|+.
T Consensus 197 ~~~~~~f~~~ig~s~~~~~~~~~~~~~-----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~ 265 (520)
T PRK10820 197 VNDDSAFSQIVAVSPKMRQVVEQARKL-----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCAS 265 (520)
T ss_pred ccccccccceeECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEecccc
Confidence 345679999999999888887776531 22345699999999999999999987654 5999999987
Q ss_pred HHhhh-----cCCch-------HHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc--CCc
Q 011553 261 LIQKY-----LGDGP-------KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD--GFD 326 (483)
Q Consensus 261 l~~~~-----~g~~~-------~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~--~~~ 326 (483)
+.... .|... .....+|+.|. .++||||||+.| +...|..|+.+++.-. ...
T Consensus 266 ~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 266 IPDDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEM-----------SPRMQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred CCHHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhC-----------CHHHHHHHHHHHhcCCcccCC
Confidence 64321 12111 01122344443 379999999999 6778899999987521 110
Q ss_pred ----CCCCeEEEEEeCCC-------CCCChhhcCCCccceEEEcCCCCHHHHHH
Q 011553 327 ----SRGDVKVILATNRI-------ESLDPALLRPGRIDRKIEFPLPDIKTRRR 369 (483)
Q Consensus 327 ----~~~~v~vI~ttn~~-------~~ld~allr~gR~~~~i~~~~P~~~~r~~ 369 (483)
...++.||+||+.. ..+.+.|.. |+. .+.+..|...+|.+
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~ 382 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQ 382 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChh
Confidence 12368999998763 124455655 654 46666777777663
No 175
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.29 E-value=1e-10 Score=115.00 Aligned_cols=196 Identities=17% Similarity=0.210 Sum_probs=119.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCC-ceEE--E-e----chHHHh---hhcCCc-----h-HHHHHHH----HHHhhcCC
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSA-TFLR--V-V----GSELIQ---KYLGDG-----P-KLVRELF----RVADDLSP 285 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~-~~~~--v-~----~~~l~~---~~~g~~-----~-~~i~~~f----~~a~~~~p 285 (483)
.++|+||+|+|||++++.+++.+.. .+.. + + ..++.. ...|.. . ..+..+. .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4889999999999999999998763 2221 1 1 111111 111211 1 1112221 22334566
Q ss_pred eEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC--CCCC----ChhhcCCCccceEEEc
Q 011553 286 SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR--IESL----DPALLRPGRIDRKIEF 359 (483)
Q Consensus 286 ~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~--~~~l----d~allr~gR~~~~i~~ 359 (483)
.+|+|||++.+. ......+..+.+... .....+.||++... .+.+ ...+.+ |+...+.+
T Consensus 125 ~vliiDe~~~l~-----------~~~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l 189 (269)
T TIGR03015 125 ALLVVDEAQNLT-----------PELLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHL 189 (269)
T ss_pred eEEEEECcccCC-----------HHHHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeC
Confidence 799999999882 222333333322211 11223444444432 1111 123555 77778999
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHH
Q 011553 360 PLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIK 439 (483)
Q Consensus 360 ~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~ 439 (483)
++.+.++...++...+..........+. ...++.+...+.|.. +.|.
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~--------------------------------~~~~~~i~~~s~G~p-~~i~ 236 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFS--------------------------------EGAFDAIHRFSRGIP-RLIN 236 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcC--------------------------------HHHHHHHHHHcCCcc-cHHH
Confidence 9999999999998887654332211110 234667778888876 5599
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 011553 440 AICTEAGLLALRERRMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 440 ~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~ 470 (483)
.+|..|...|..++...|+.+++..++..+.
T Consensus 237 ~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 237 ILCDRLLLSAFLEEKREIGGEEVREVIAEID 267 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Confidence 9999999999999999999999999998864
No 176
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.29 E-value=1.1e-11 Score=113.37 Aligned_cols=122 Identities=26% Similarity=0.455 Sum_probs=81.9
Q ss_pred ccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHHHhh-----
Q 011553 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQK----- 264 (483)
Q Consensus 193 i~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l~~~----- 264 (483)
|+|.+..++++.+.+... ...+..|||+|++||||+++|++|++... .||+.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~~-----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA-----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHH-----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH-----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 457777777777766542 23456799999999999999999999764 59999999876432
Q ss_pred hcCCch-------HHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc--CCc----CCCCe
Q 011553 265 YLGDGP-------KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD--GFD----SRGDV 331 (483)
Q Consensus 265 ~~g~~~-------~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~--~~~----~~~~v 331 (483)
..|... .....+|..|.. ++||||||+.| ....|..|+++|+.-. ... ...++
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hhccccccccccccccCCceeeccc---eEEeecchhhh-----------HHHHHHHHHHHHhhchhccccccccccccc
Confidence 122110 111256666655 79999999999 7789999999998522 111 12379
Q ss_pred EEEEEeCC
Q 011553 332 KVILATNR 339 (483)
Q Consensus 332 ~vI~ttn~ 339 (483)
.||+||+.
T Consensus 136 RiI~st~~ 143 (168)
T PF00158_consen 136 RIIASTSK 143 (168)
T ss_dssp EEEEEESS
T ss_pred eEEeecCc
Confidence 99999985
No 177
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.29 E-value=3.9e-12 Score=118.42 Aligned_cols=146 Identities=23% Similarity=0.342 Sum_probs=68.3
Q ss_pred CcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC-----------------
Q 011553 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA----------------- 251 (483)
Q Consensus 189 ~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~----------------- 251 (483)
.|+||.|++.++..|.-+..- ..++||+||||||||++|+++..-+..
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 378999999999999887764 467999999999999999999985431
Q ss_pred -----------ceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHH
Q 011553 252 -----------TFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLN 320 (483)
Q Consensus 252 -----------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~ 320 (483)
||....-+.-....+|......-..+..| .-+|||+||+-.+ +..+...|.+-++
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislA---h~GVLflDE~~ef-----------~~~vld~Lr~ple 131 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLA---HRGVLFLDELNEF-----------DRSVLDALRQPLE 131 (206)
T ss_dssp -S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGG---TTSEEEECETTTS------------HHHHHHHHHHHH
T ss_pred CCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHh---cCCEEEechhhhc-----------CHHHHHHHHHHHH
Confidence 22221111100111111100000011111 2269999999766 6667777777776
Q ss_pred hccCC--------cCCCCeEEEEEeCCC-----------------------CCCChhhcCCCccceEEEcCCCCHH
Q 011553 321 QLDGF--------DSRGDVKVILATNRI-----------------------ESLDPALLRPGRIDRKIEFPLPDIK 365 (483)
Q Consensus 321 ~l~~~--------~~~~~v~vI~ttn~~-----------------------~~ld~allr~gR~~~~i~~~~P~~~ 365 (483)
.-... .-..++++|+|+|.- ..+..++++ |||..+.++..+.+
T Consensus 132 ~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 132 DGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred CCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 42211 112368999999841 235566777 88877777766544
No 178
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.28 E-value=1.7e-11 Score=124.79 Aligned_cols=153 Identities=27% Similarity=0.383 Sum_probs=104.1
Q ss_pred CCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc----CCceEEEechHHH
Q 011553 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----SATFLRVVGSELI 262 (483)
Q Consensus 187 ~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l----~~~~~~v~~~~l~ 262 (483)
...+.+++|-+...+++++.+... .+...+||++|++||||+++|++|+... ..||+.+||+.+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~-----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAY-----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhh-----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 346778899999999888877651 2345669999999999999999998643 4599999998875
Q ss_pred hhh-------------cCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhc-----cC
Q 011553 263 QKY-------------LGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQL-----DG 324 (483)
Q Consensus 263 ~~~-------------~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l-----~~ 324 (483)
... .| ....-..+|+.|.. ++||+|||..+ ..+.|..|+.+|++- .+
T Consensus 143 en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~G---GtLfLDEI~~L-----------P~~~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 143 ENLQEAELFGHEKGAFTG-AQGGKAGLFEQANG---GTLFLDEIHRL-----------PPEGQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred cCHHHHHHhccccceeec-ccCCcCchheecCC---CEEehhhhhhC-----------CHhHHHHHHHHHHcCceEecCC
Confidence 432 22 11122345555544 79999999998 678899999999862 22
Q ss_pred C-cCCCCeEEEEEeCC--CCCCCh--hhcCCCccceEEEcCCCCHHHHH
Q 011553 325 F-DSRGDVKVILATNR--IESLDP--ALLRPGRIDRKIEFPLPDIKTRR 368 (483)
Q Consensus 325 ~-~~~~~v~vI~ttn~--~~~ld~--allr~gR~~~~i~~~~P~~~~r~ 368 (483)
- ....+|.+|+||+. .+.+-. .+.+ -|+ .+.+..|+.++|.
T Consensus 208 ~~~~~~dVRli~AT~~~l~~~~~~g~dl~~-rl~--~~~I~LPpLrER~ 253 (403)
T COG1221 208 SQPRPVDVRLICATTEDLEEAVLAGADLTR-RLN--ILTITLPPLRERK 253 (403)
T ss_pred CCCcCCCceeeeccccCHHHHHHhhcchhh-hhc--CceecCCChhhch
Confidence 1 12347999999974 222223 3433 033 4555566666664
No 179
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.28 E-value=1.3e-11 Score=132.23 Aligned_cols=153 Identities=24% Similarity=0.389 Sum_probs=105.2
Q ss_pred CcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHHHhh-
Q 011553 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQK- 264 (483)
Q Consensus 189 ~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l~~~- 264 (483)
.+.+++|.+..++.+.+.+... ...+..|||+|++||||+++|++|+.... .+|+.++|+.+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 5678999999999998888752 34466799999999999999999999754 69999999876432
Q ss_pred ----hcCCchH-------HHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccC--C----cC
Q 011553 265 ----YLGDGPK-------LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG--F----DS 327 (483)
Q Consensus 265 ----~~g~~~~-------~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~--~----~~ 327 (483)
..|.... .....|..| ..++|||||||.| ..+.|..|+.+++.-.. . ..
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGEL-----------PLALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhC-----------CHHHHHHHHHHHhcCCEeeCCCCcce
Confidence 1111100 001134433 3479999999999 67788999998874221 1 01
Q ss_pred CCCeEEEEEeCCC-------CCCChhhcCCCccceEEEcCCCCHHHHHH
Q 011553 328 RGDVKVILATNRI-------ESLDPALLRPGRIDRKIEFPLPDIKTRRR 369 (483)
Q Consensus 328 ~~~v~vI~ttn~~-------~~ld~allr~gR~~~~i~~~~P~~~~r~~ 369 (483)
..++.+|++||.. ..+.+.|.. |+. .+.+..|...+|.+
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~e 365 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGD 365 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchh
Confidence 2368999999863 224455554 554 56677777777754
No 180
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.27 E-value=5.2e-10 Score=104.85 Aligned_cols=169 Identities=21% Similarity=0.263 Sum_probs=117.7
Q ss_pred cCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechH
Q 011553 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSE 260 (483)
Q Consensus 184 ~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~ 260 (483)
..+.+.+++|+|.+.+++.|.+.....+. -.+.++|||+|..|||||+|+||+.++.. ..+++|+-.+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~---------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAE---------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHc---------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 44567899999999999998776654321 23456799999999999999999998774 4688888777
Q ss_pred HHhhhcCCchHHHHHHHHHHhhc-CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCC-cCCCCeEEEEEeC
Q 011553 261 LIQKYLGDGPKLVRELFRVADDL-SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-DSRGDVKVILATN 338 (483)
Q Consensus 261 l~~~~~g~~~~~i~~~f~~a~~~-~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~-~~~~~v~vI~ttn 338 (483)
+.. +-.+++..+.. ..-|||+|++- + .. ..+....|..+|+ .++ ....+|+|-+|+|
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLS-F--------e~-gd~~yK~LKs~Le--G~ve~rP~NVl~YATSN 182 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLS-F--------EE-GDDAYKALKSALE--GGVEGRPANVLFYATSN 182 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCC-C--------CC-CchHHHHHHHHhc--CCcccCCCeEEEEEecC
Confidence 643 33445554443 24699999972 1 11 1223344444443 112 2346899999999
Q ss_pred CCCCCChh--------------------hcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCc
Q 011553 339 RIESLDPA--------------------LLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD 382 (483)
Q Consensus 339 ~~~~ld~a--------------------llr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~ 382 (483)
+-..++.. +--+.||...+.|++++.++...|+..+.....+.-
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 85544321 111349999999999999999999999998776644
No 181
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.26 E-value=1.1e-11 Score=109.44 Aligned_cols=113 Identities=29% Similarity=0.365 Sum_probs=73.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEechHH------HhhhcCC--chHHHHHHHHHHhhcCCeEEEEcCCccccc
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL------IQKYLGD--GPKLVRELFRVADDLSPSIVFIDEIDAVGT 298 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l------~~~~~g~--~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~ 298 (483)
+|||+||||||||+||+.+|..++.+++.+.++.. .+.+.-. ........+..+. ..+++++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccC--
Confidence 48999999999999999999999999999987653 2222110 0000000000000 04679999999887
Q ss_pred cccCCCCCChHHHHHHHHHHHHhccCC-------c-CCC------CeEEEEEeCCCC----CCChhhcCCCcc
Q 011553 299 KRYDAHSGGEREIQRTMLELLNQLDGF-------D-SRG------DVKVILATNRIE----SLDPALLRPGRI 353 (483)
Q Consensus 299 ~r~~~~~~~~~~~~~~l~~lL~~l~~~-------~-~~~------~v~vI~ttn~~~----~ld~allr~gR~ 353 (483)
+.++...|+.+++.-... . ... ++.+|+|+|..+ .++++|++ ||
T Consensus 78 ---------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ---------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ---------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 567788888888642111 1 111 389999999988 89999999 87
No 182
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.26 E-value=2.3e-10 Score=109.75 Aligned_cols=134 Identities=25% Similarity=0.263 Sum_probs=91.7
Q ss_pred CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC-------------CCCCChhhcCC
Q 011553 284 SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR-------------IESLDPALLRP 350 (483)
Q Consensus 284 ~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~-------------~~~ld~allr~ 350 (483)
-|+|+||||++.| +-+....|...|. +.-.-+||++||+ |.-+++.|++
T Consensus 296 vPGVLFIDEVhML-----------DiEcFTyL~kalE------S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD- 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----------DIECFTYLHKALE------SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD- 357 (456)
T ss_pred cCcceEeeehhhh-----------hhHHHHHHHHHhc------CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh-
Confidence 4889999999888 4444444444443 1223457777775 4568888988
Q ss_pred CccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcC
Q 011553 351 GRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTK 430 (483)
Q Consensus 351 gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~ 430 (483)
|+- +|..-+++.++.++|+++......+.-+ +..+..++...
T Consensus 358 -Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~------------------------------------e~a~~~l~~~g 399 (456)
T KOG1942|consen 358 -RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVE------------------------------------EEALDLLAEIG 399 (456)
T ss_pred -hee-EEeeccCCHHHHHHHHHHHHhhhcceec------------------------------------HHHHHHHHhhc
Confidence 884 7777788999999999988765554432 22344444444
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhc
Q 011553 431 DEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKK 473 (483)
Q Consensus 431 ~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~ 473 (483)
..-|-+-..+++.-|...|-..++..|..+|++++-.-.+..+
T Consensus 400 t~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~Dak 442 (456)
T KOG1942|consen 400 TSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELFLDAK 442 (456)
T ss_pred cchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHHHhch
Confidence 4445566667777788888778899999999998877666543
No 183
>PRK04132 replication factor C small subunit; Provisional
Probab=99.25 E-value=2.4e-10 Score=126.81 Aligned_cols=211 Identities=18% Similarity=0.212 Sum_probs=141.9
Q ss_pred eEEEc--CCCCchHHHHHHHHHHc-----CCceEEEechHHHhhhcCCchHHHHHHHHHHhhcC------CeEEEEcCCc
Q 011553 228 VILYG--EPGTGKTLLAKAVANST-----SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLS------PSIVFIDEID 294 (483)
Q Consensus 228 vLL~G--ppGtGKT~Laraia~~l-----~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~------p~Il~iDEiD 294 (483)
-+..| |++.||||+|+++|+++ +.+|+.+++++..+ -..++.+...+.... ..|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 56678 99999999999999997 45899999987422 235555554433222 2599999999
Q ss_pred cccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHH
Q 011553 295 AVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIH 374 (483)
Q Consensus 295 ~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~ 374 (483)
.| +.+.|..|+.++.+ +..++.||++||.++.+.+++++ |+. .+.|++|+.++....+...
T Consensus 641 ~L-----------t~~AQnALLk~lEe-----p~~~~~FILi~N~~~kIi~tIrS--RC~-~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 641 AL-----------TQDAQQALRRTMEM-----FSSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred cC-----------CHHHHHHHHHHhhC-----CCCCeEEEEEeCChhhCchHHhh--hce-EEeCCCCCHHHHHHHHHHH
Confidence 99 55678888888864 34678999999999999999998 984 9999999999999888877
Q ss_pred HcCCCCC-cccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHH----HHH
Q 011553 375 TSRMTLA-DDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAG----LLA 449 (483)
Q Consensus 375 ~~~~~~~-~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~----~~A 449 (483)
+...++. ++..+..++. .+.+|++.+...++...... ..++.+.+..........+|..++..+. ..+
T Consensus 702 ~~~Egi~i~~e~L~~Ia~----~s~GDlR~AIn~Lq~~~~~~---~~It~~~V~~~~~~~~~~~I~~il~~~l~~~~~~a 774 (846)
T PRK04132 702 AENEGLELTEEGLQAILY----IAEGDMRRAINILQAAAALD---DKITDENVFLVASRARPEDIREMMLLALKGNFLKA 774 (846)
T ss_pred HHhcCCCCCHHHHHHHHH----HcCCCHHHHHHHHHHHHHhc---CCCCHHHHHHHhCCCCHHHHHHHHHHHhcCcHHHH
Confidence 7654433 2233455554 45567777766666543211 2455555555555555566766666443 111
Q ss_pred ---HHh--cCCCccHHHHHHHHHHHH
Q 011553 450 ---LRE--RRMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 450 ---~~~--~~~~it~ed~~~Al~~~~ 470 (483)
+.+ ....+..+++-..+-..+
T Consensus 775 r~~l~ell~~~G~~~~~iL~~l~~~l 800 (846)
T PRK04132 775 REKLREILLKQGLSGEDVLVQMHREV 800 (846)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 111 124455666655555444
No 184
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.24 E-value=1e-11 Score=113.77 Aligned_cols=113 Identities=25% Similarity=0.270 Sum_probs=72.9
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCC----ceEEEechHHHhhhcCCchHHHHHHHHHH----hhcCCeEEEEcCCcccc
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSA----TFLRVVGSELIQKYLGDGPKLVRELFRVA----DDLSPSIVFIDEIDAVG 297 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~----~~~~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~Il~iDEiD~l~ 297 (483)
..+||+||+|||||.+|+++|..+.. +++.++++++.... .....+..++..+ .....+||||||||++.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 45999999999999999999999995 99999999987611 1112222222211 11112499999999995
Q ss_pred ccccCCCCCChHHHHHHHHHHHHhccCC------cCCCCeEEEEEeCCC
Q 011553 298 TKRYDAHSGGEREIQRTMLELLNQLDGF------DSRGDVKVILATNRI 340 (483)
Q Consensus 298 ~~r~~~~~~~~~~~~~~l~~lL~~l~~~------~~~~~v~vI~ttn~~ 340 (483)
.......+-....+++.|+++++.-.-. .+..+++||+|+|--
T Consensus 82 ~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 82 PSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp HTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 4311111111236788888888742211 123579999999863
No 185
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=4.3e-10 Score=112.97 Aligned_cols=155 Identities=18% Similarity=0.253 Sum_probs=111.3
Q ss_pred CcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc----------------
Q 011553 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT---------------- 252 (483)
Q Consensus 189 ~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~---------------- 252 (483)
.|++|+|++.+++.+...+... ..+.++||+||+|+||+++|.++|+.+.+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 5889999999999999999762 456789999999999999999999976321
Q ss_pred --eEEEechHHH-h-----h---hcC-------C-chHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChH
Q 011553 253 --FLRVVGSELI-Q-----K---YLG-------D-GPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGER 309 (483)
Q Consensus 253 --~~~v~~~~l~-~-----~---~~g-------~-~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~ 309 (483)
++.+...... + . ..| . .-..++.+...+.. ....|++||++|.| +.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----------~~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----------NE 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----------CH
Confidence 1222211000 0 0 000 0 01245555544433 23469999999999 55
Q ss_pred HHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHH
Q 011553 310 EIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHT 375 (483)
Q Consensus 310 ~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~ 375 (483)
..+..|+..|++ +. +.+||++|+.++.+.|.+++ |+. .+.|++|+.++..+++....
T Consensus 139 ~aaNaLLK~LEE-----Pp-~~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 139 AAANALLKTLEE-----PG-NGTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred HHHHHHHHHHhC-----CC-CCeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhh
Confidence 566777777764 23 56788899999999999999 985 99999999999999888664
No 186
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.23 E-value=1.7e-10 Score=119.21 Aligned_cols=147 Identities=24% Similarity=0.356 Sum_probs=92.5
Q ss_pred cccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC--c-----eEEEe----c
Q 011553 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA--T-----FLRVV----G 258 (483)
Q Consensus 190 ~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~--~-----~~~v~----~ 258 (483)
++++.+-++..+.+...+.. .++++|+||||||||++|+++|..+.. . ++.+. .
T Consensus 174 l~d~~i~e~~le~l~~~L~~---------------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI---------------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc---------------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 55677777777777666543 567999999999999999999998753 1 22222 2
Q ss_pred hHHHhhhcCC--c----hHHHHHHHHHHhhc--CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHh---------
Q 011553 259 SELIQKYLGD--G----PKLVRELFRVADDL--SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQ--------- 321 (483)
Q Consensus 259 ~~l~~~~~g~--~----~~~i~~~f~~a~~~--~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~--------- 321 (483)
.+++..+... . ...+..++..|... .|.+||||||++....+ ....+..+|+.
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k----------iFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK----------VFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH----------hhhhhhhhccccccccccce
Confidence 2333222111 1 12334455566543 47899999998763221 11222222221
Q ss_pred --------ccCCcCCCCeEEEEEeCCCC----CCChhhcCCCccceEEEcCC-CCH
Q 011553 322 --------LDGFDSRGDVKVILATNRIE----SLDPALLRPGRIDRKIEFPL-PDI 364 (483)
Q Consensus 322 --------l~~~~~~~~v~vI~ttn~~~----~ld~allr~gR~~~~i~~~~-P~~ 364 (483)
.+.+....++.||+|+|..+ .+|.||+| ||. .|++.+ ++.
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p~~~~ 361 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEPGFDT 361 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecCCCCh
Confidence 11244457899999999877 79999999 996 666654 343
No 187
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.21 E-value=3.2e-10 Score=105.61 Aligned_cols=128 Identities=21% Similarity=0.276 Sum_probs=89.9
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCCc------------------------eEEEechHHHhhhcCCchHHHHHHHH
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSAT------------------------FLRVVGSELIQKYLGDGPKLVRELFR 278 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~~------------------------~~~v~~~~l~~~~~g~~~~~i~~~f~ 278 (483)
..+..+||+||+|+|||++|+++++.+... |..+.... . ......++.+..
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHH
Confidence 345679999999999999999999987432 22221110 0 012245555565
Q ss_pred HHhh----cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccc
Q 011553 279 VADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRID 354 (483)
Q Consensus 279 ~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~ 354 (483)
.+.. ....||+|||+|.+ +.+.+..|+..++ . +...+.+|++|+.+..+.+++.+ |+.
T Consensus 87 ~~~~~~~~~~~kviiide~~~l-----------~~~~~~~Ll~~le---~--~~~~~~~il~~~~~~~l~~~i~s--r~~ 148 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERM-----------NEAAANALLKTLE---E--PPPNTLFILITPSPEKLLPTIRS--RCQ 148 (188)
T ss_pred HHccCcccCCeEEEEEechhhh-----------CHHHHHHHHHHhc---C--CCCCeEEEEEECChHhChHHHHh--hcE
Confidence 5544 23469999999998 3344555555554 3 24567788888888899999988 884
Q ss_pred eEEEcCCCCHHHHHHHHHHH
Q 011553 355 RKIEFPLPDIKTRRRIFQIH 374 (483)
Q Consensus 355 ~~i~~~~P~~~~r~~Il~~~ 374 (483)
.+.|++|+.++...++...
T Consensus 149 -~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 149 -VLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred -EeeCCCCCHHHHHHHHHHc
Confidence 8999999999998888876
No 188
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=8e-12 Score=127.82 Aligned_cols=234 Identities=20% Similarity=0.252 Sum_probs=126.9
Q ss_pred CCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC----ceEEEe-----
Q 011553 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA----TFLRVV----- 257 (483)
Q Consensus 187 ~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~----~~~~v~----- 257 (483)
...|.||.|++..++.+..+..- .+++||+||||||||+||+.+..-+.. .+++++
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG---------------gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~ 239 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG---------------GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSL 239 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc---------------CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhh
Confidence 34899999999999999877654 578999999999999999988864431 011100
Q ss_pred chHHHh--------h--hcCCchHHHHHHHHHHhh--------cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHH
Q 011553 258 GSELIQ--------K--YLGDGPKLVRELFRVADD--------LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELL 319 (483)
Q Consensus 258 ~~~l~~--------~--~~g~~~~~i~~~f~~a~~--------~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL 319 (483)
...+.. . ..+.+... ..+...... ...+||||||+-.+ . +.+++.|
T Consensus 240 ~g~~~~~~~~~~~rPFr~PHHsaS~-~aLvGGG~~p~PGeIsLAH~GVLFLDElpef-----------~----~~iLe~L 303 (490)
T COG0606 240 AGDLHEGCPLKIHRPFRAPHHSASL-AALVGGGGVPRPGEISLAHNGVLFLDELPEF-----------K----RSILEAL 303 (490)
T ss_pred cccccccCccceeCCccCCCccchH-HHHhCCCCCCCCCceeeecCCEEEeeccchh-----------h----HHHHHHH
Confidence 000000 0 00000000 001100000 11259999998554 2 2333333
Q ss_pred -HhccCC-----------cCCCCeEEEEEeCCC-----------------------CCCChhhcCCCccceEEEcCCCCH
Q 011553 320 -NQLDGF-----------DSRGDVKVILATNRI-----------------------ESLDPALLRPGRIDRKIEFPLPDI 364 (483)
Q Consensus 320 -~~l~~~-----------~~~~~v~vI~ttn~~-----------------------~~ld~allr~gR~~~~i~~~~P~~ 364 (483)
+-++.- .-..++.+|+++|.. ..+...|++ |||..++++.++.
T Consensus 304 R~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~ 381 (490)
T COG0606 304 REPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSA 381 (490)
T ss_pred hCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCH
Confidence 223210 011257788888752 224556777 9998999888775
Q ss_pred HHHHHHHHHHHcCCCCCcccchHH------------HHh--hccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcC
Q 011553 365 KTRRRIFQIHTSRMTLADDVNLEE------------FVM--TKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTK 430 (483)
Q Consensus 365 ~~r~~Il~~~~~~~~~~~~~~l~~------------la~--~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~ 430 (483)
.++..-. .... ....+.. ... ....++..+|++.+.+-.. +.++...+...
T Consensus 382 ~e~~~~~---~~~e---ss~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~---------~~~~L~~al~~ 446 (490)
T COG0606 382 GELIRQV---PTGE---SSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQRE---------DADLLKAALER 446 (490)
T ss_pred HHhhcCC---CCCC---CcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHh---------HHHHHHHHHHh
Confidence 5442100 0000 0000000 000 0011122222221111110 22333344455
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 011553 431 DEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEK 468 (483)
Q Consensus 431 ~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~ 468 (483)
-++|.+....+++-|..+|..++...|...|+.+|+..
T Consensus 447 ~~lS~R~~~rILKvarTiADL~g~~~i~~~hl~eAi~y 484 (490)
T COG0606 447 LGLSARAYHRILKVARTIADLEGSEQIERSHLAEAISY 484 (490)
T ss_pred cchhHHHHHHHHHHHhhhhcccCcchhhHHHHHHHHhh
Confidence 67888999999999999999999999999999999864
No 189
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.21 E-value=2.7e-10 Score=115.25 Aligned_cols=254 Identities=19% Similarity=0.251 Sum_probs=147.7
Q ss_pred CCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEec---------
Q 011553 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG--------- 258 (483)
Q Consensus 188 ~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~--------- 258 (483)
..|..++|++..+..|.-....| .-.|+||.|+.|||||+++|+||.-+.---+...|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P-------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDP-------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccc-------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 45777899999888875554332 23579999999999999999999977531111111
Q ss_pred ----hH-------------------HHhhhcCCchHHH------HHHHHH---------HhhcCCeEEEEcCCccccccc
Q 011553 259 ----SE-------------------LIQKYLGDGPKLV------RELFRV---------ADDLSPSIVFIDEIDAVGTKR 300 (483)
Q Consensus 259 ----~~-------------------l~~~~~g~~~~~i------~~~f~~---------a~~~~p~Il~iDEiD~l~~~r 300 (483)
.. +.+.-.|.++..+ ....+. ....+-+|+++||+..|
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL---- 156 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL---- 156 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc----
Confidence 11 1111123333311 111110 00112359999999888
Q ss_pred cCCCCCChHHHHHHHHHHHHhc------cCC--cCCCCeEEEEEeCCC-CCCChhhcCCCccceEEEcCCC-CHHHHHHH
Q 011553 301 YDAHSGGEREIQRTMLELLNQL------DGF--DSRGDVKVILATNRI-ESLDPALLRPGRIDRKIEFPLP-DIKTRRRI 370 (483)
Q Consensus 301 ~~~~~~~~~~~~~~l~~lL~~l------~~~--~~~~~v~vI~ttn~~-~~ld~allr~gR~~~~i~~~~P-~~~~r~~I 370 (483)
...++..|++.+.+- +|+ ....++++|+|+|.- ..|-|.|++ ||...+.+..| +.++|.+|
T Consensus 157 -------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~I 227 (423)
T COG1239 157 -------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEI 227 (423)
T ss_pred -------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHH
Confidence 667899999988762 332 223479999999974 458899999 99999999866 78889999
Q ss_pred HHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcC--CCCC-HHHHHHHHHHHHH
Q 011553 371 FQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTK--DEFS-GADIKAICTEAGL 447 (483)
Q Consensus 371 l~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~--~g~s-~~di~~l~~~A~~ 447 (483)
......- ...+...+..++... ..++...-.+........+. +.....++..+ .+.. .+.-..+++.|..
T Consensus 228 i~r~~~f-~~~Pe~f~~~~~~~~-----~~lR~~ii~ar~~l~~V~l~-~~~~~~ia~~~~~~~v~g~radi~~~r~a~a 300 (423)
T COG1239 228 IRRRLAF-EAVPEAFLEKYADAQ-----RALRARIIAARSLLSEVELD-DDAETKIAELCARLAVDGHRADIVVVRAAKA 300 (423)
T ss_pred HHHHHHh-hcCcHHHHHHHHHHH-----HHHHHHHHHHHhccccccCc-HHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 9866543 222222122221111 11111111111111111111 11122222211 1111 2333346677777
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHhhcc
Q 011553 448 LALRERRMKVTHTDFKKAKEKVMFKKK 474 (483)
Q Consensus 448 ~A~~~~~~~it~ed~~~Al~~~~~~~~ 474 (483)
.|...++..|+.+|+++|...++....
T Consensus 301 ~aa~~Gr~~v~~~Di~~a~~l~l~hR~ 327 (423)
T COG1239 301 LAALRGRTEVEEEDIREAAELALLHRR 327 (423)
T ss_pred HHHhcCceeeehhhHHHHHhhhhhhhh
Confidence 888889999999999999999876543
No 190
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.20 E-value=9.1e-11 Score=118.31 Aligned_cols=149 Identities=23% Similarity=0.330 Sum_probs=106.4
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---------------------
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS--------------------- 250 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~--------------------- 250 (483)
+++|.+.+...+..++... ...+..+||+||||+|||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~-----------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES-----------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhc-----------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 4677888888888777632 13344699999999999999999999887
Q ss_pred ---CceEEEechHHHhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc
Q 011553 251 ---ATFLRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD 323 (483)
Q Consensus 251 ---~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~ 323 (483)
..|+.++.++....- .....++.+-...... ..-||+|||+|.| +.+.+..++..+.+
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m-----------t~~A~nallk~lEe-- 135 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL-----------TEDAANALLKTLEE-- 135 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH-----------hHHHHHHHHHHhcc--
Confidence 466777766643221 1233444444443332 3469999999999 55667777777653
Q ss_pred CCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHH
Q 011553 324 GFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ 372 (483)
Q Consensus 324 ~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~ 372 (483)
+..+..||++||.++.+-+.+++ |+. .+.|++|+.........
T Consensus 136 ---p~~~~~~il~~n~~~~il~tI~S--Rc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 136 ---PPKNTRFILITNDPSKILPTIRS--RCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred ---CCCCeEEEEEcCChhhccchhhh--cce-eeecCCchHHHHHHHhh
Confidence 45689999999999999999998 985 88998866555544433
No 191
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.20 E-value=1e-10 Score=129.88 Aligned_cols=154 Identities=25% Similarity=0.420 Sum_probs=104.5
Q ss_pred CCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhh
Q 011553 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQK 264 (483)
Q Consensus 188 ~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~ 264 (483)
..|.+++|.+..++.+.+.+... ......|||+|++|||||++|++|+... +.+|+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 46789999999999988877652 2345579999999999999999999865 459999999865321
Q ss_pred -----hcCCc-------hHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccC--C----c
Q 011553 265 -----YLGDG-------PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG--F----D 326 (483)
Q Consensus 265 -----~~g~~-------~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~--~----~ 326 (483)
..|.. .......|..+. .++||||||+.+ ..+.|..|+.+++.-.- . .
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDM-----------PLELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhC-----------CHHHHHHHHHHHHhCCEEeCCCCCc
Confidence 11210 001112344333 479999999998 67889999999875221 0 0
Q ss_pred CCCCeEEEEEeCCCC-------CCChhhcCCCccceEEEcCCCCHHHHHH
Q 011553 327 SRGDVKVILATNRIE-------SLDPALLRPGRIDRKIEFPLPDIKTRRR 369 (483)
Q Consensus 327 ~~~~v~vI~ttn~~~-------~ld~allr~gR~~~~i~~~~P~~~~r~~ 369 (483)
...++.+|++|+..- .+...|.. |+. .+.+..|...+|.+
T Consensus 508 ~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~ 554 (686)
T PRK15429 508 IQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPE 554 (686)
T ss_pred ccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHh
Confidence 124689999997631 23333443 443 56677777777765
No 192
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.20 E-value=2e-10 Score=111.66 Aligned_cols=229 Identities=17% Similarity=0.191 Sum_probs=153.1
Q ss_pred ceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEec
Q 011553 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (483)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~ 258 (483)
.-|++++++..+.|+++.++++..+.++...+ ..| +.|+|||||||||+-..+.|..+..+.-.-+.
T Consensus 29 ~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~------------~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m 95 (360)
T KOG0990|consen 29 QPWVEKYRPPFLGIVIKQEPIWSTENRYSGMP------------GLP-HLLFYGPPGTGKTSTILANARDFYSPHPTTSM 95 (360)
T ss_pred CCCccCCCCchhhhHhcCCchhhHHHHhccCC------------CCC-cccccCCCCCCCCCchhhhhhhhcCCCCchhH
Confidence 45889999999999999999999999986542 222 79999999999999999999988764111000
Q ss_pred -hHHH-hhhcCC-chHHHHHHHHHHhh-------cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCC
Q 011553 259 -SELI-QKYLGD-GPKLVRELFRVADD-------LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSR 328 (483)
Q Consensus 259 -~~l~-~~~~g~-~~~~i~~~f~~a~~-------~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~ 328 (483)
-++- +.-.|- ..+.-...|..++. ..+..|++||+|++ ..+.|.+|-+.+... .
T Consensus 96 ~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-----------T~~AQnALRRviek~-----t 159 (360)
T KOG0990|consen 96 LLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-----------TRDAQNALRRVIEKY-----T 159 (360)
T ss_pred HHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHh-----------hHHHHHHHHHHHHHh-----c
Confidence 0000 001111 11222335555553 25679999999999 667777777755432 4
Q ss_pred CCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccc-hHHHHhhccccchhhHHHHHHH
Q 011553 329 GDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVN-LEEFVMTKDEFSGADIKTRRRI 407 (483)
Q Consensus 329 ~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~-l~~la~~t~g~~~~~i~~~~r~ 407 (483)
.++.|+..+|.+..+.|++++ ||. .+.|.+.+...-...+.+++......-..+ ...+ .-.+.+|+..+...
T Consensus 160 ~n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~----~r~s~gDmr~a~n~ 232 (360)
T KOG0990|consen 160 ANTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSAL----GRLSVGDMRVALNY 232 (360)
T ss_pred cceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHH----HHHhHHHHHHHHHH
Confidence 567888888999999999998 996 777777777777777887776655433222 2222 23456777777777
Q ss_pred HHHhhccccccccC-CHHHHHhcCCCC-CHHHHHHHHH
Q 011553 408 FQIHTSRMTLADDV-NLEEFVMTKDEF-SGADIKAICT 443 (483)
Q Consensus 408 ~~~~~~~~~~~~~~-~l~~la~~~~g~-s~~di~~l~~ 443 (483)
++.....+-..... +..+++..+.|+ ...||.++.+
T Consensus 233 Lqs~~~~~~~~~e~~~~~~~vy~c~g~p~~~dI~~I~~ 270 (360)
T KOG0990|consen 233 LQSILKKVMERKELNNPNDLVYQCKGAPQPSDIRQIIE 270 (360)
T ss_pred HHHHHHHhCCCCCCCCchhhHHHhcCCCChhHHHHHHH
Confidence 77665444332222 455566666665 3567887766
No 193
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=7.1e-10 Score=120.89 Aligned_cols=170 Identities=23% Similarity=0.327 Sum_probs=134.1
Q ss_pred cCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc----------CCce
Q 011553 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATF 253 (483)
Q Consensus 184 ~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l----------~~~~ 253 (483)
.+....++-++|.++.++++.+.+.. ...++-+|+|+||+|||.++..+|.+. +..+
T Consensus 163 ~Ar~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i 229 (786)
T COG0542 163 LAREGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRI 229 (786)
T ss_pred HHhcCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEE
Confidence 34455677789999999999998876 334568899999999999999999864 3567
Q ss_pred EEEechHHHh--hhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCe
Q 011553 254 LRVVGSELIQ--KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDV 331 (483)
Q Consensus 254 ~~v~~~~l~~--~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v 331 (483)
+.++.+.+.. +|.|+.+..++.+.+......+.|||||||+.+.+...... + ..+....|.-.|. ++.+
T Consensus 230 ~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaLA-------RGeL 300 (786)
T COG0542 230 YSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPALA-------RGEL 300 (786)
T ss_pred EEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHHh-------cCCe
Confidence 8888888774 89999999999999999988889999999999976542211 1 3556666666664 5778
Q ss_pred EEEEEeCC-----CCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCC
Q 011553 332 KVILATNR-----IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM 378 (483)
Q Consensus 332 ~vI~ttn~-----~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~ 378 (483)
.+|++|.. .-.=|+||-| ||. .|.+.-|+.++-..|++-.-..+
T Consensus 301 ~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~y 349 (786)
T COG0542 301 RCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERY 349 (786)
T ss_pred EEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHH
Confidence 89999853 2245799999 997 99999999999999998554443
No 194
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.20 E-value=1.6e-10 Score=100.29 Aligned_cols=126 Identities=29% Similarity=0.442 Sum_probs=81.4
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCc---eEEEechHHHhh--------------hcCCchHHHHHHHHHHhhcCCeE
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSAT---FLRVVGSELIQK--------------YLGDGPKLVRELFRVADDLSPSI 287 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~---~~~v~~~~l~~~--------------~~g~~~~~i~~~f~~a~~~~p~I 287 (483)
+..++|+||||||||++++++|..+... ++.+++...... ...........++..+....+++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3569999999999999999999999875 777777654321 12233455677888888877899
Q ss_pred EEEcCCccccccccCCCCCChHHHHHHHHHH--HHhccCCcCCCCeEEEEEeCC-CCCCChhhcCCCccceEEEcCCC
Q 011553 288 VFIDEIDAVGTKRYDAHSGGEREIQRTMLEL--LNQLDGFDSRGDVKVILATNR-IESLDPALLRPGRIDRKIEFPLP 362 (483)
Q Consensus 288 l~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l--L~~l~~~~~~~~v~vI~ttn~-~~~ld~allr~gR~~~~i~~~~P 362 (483)
|||||++.+.... ........ ...........+..+|+++|. ....+..+.+ |++..+.+..+
T Consensus 82 iiiDei~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAE----------QEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHH----------HHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999985321 11111110 000001112456789999986 3334455554 78777777654
No 195
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=1.2e-09 Score=110.34 Aligned_cols=131 Identities=23% Similarity=0.325 Sum_probs=94.8
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCCc------------------------eEEEechHHHhhhcCCchHHHHHHHH
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSAT------------------------FLRVVGSELIQKYLGDGPKLVRELFR 278 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~~------------------------~~~v~~~~l~~~~~g~~~~~i~~~f~ 278 (483)
..+.++||+||+|+|||++|+++|+.+.+. ++.+...+- + ..-.-..++++.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHHH
Confidence 446779999999999999999999987541 222211000 0 0012345666655
Q ss_pred HHhh----cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccc
Q 011553 279 VADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRID 354 (483)
Q Consensus 279 ~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~ 354 (483)
.+.. ....|++||++|.| +.+.+..|+..|++ +..+++||++|+.++.+.|.+++ |+.
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m-----------~~~aaNaLLK~LEE-----Pp~~~~fiL~t~~~~~ll~TI~S--Rc~ 158 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAM-----------NRNAANALLKSLEE-----PSGDTVLLLISHQPSRLLPTIKS--RCQ 158 (328)
T ss_pred HHhhccccCCCeEEEECChhhC-----------CHHHHHHHHHHHhC-----CCCCeEEEEEECChhhCcHHHHh--hce
Confidence 5443 23459999999999 55667777777764 45689999999999999999999 996
Q ss_pred eEEEcCCCCHHHHHHHHHHHH
Q 011553 355 RKIEFPLPDIKTRRRIFQIHT 375 (483)
Q Consensus 355 ~~i~~~~P~~~~r~~Il~~~~ 375 (483)
.+.|++|+.++....+....
T Consensus 159 -~~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 159 -QQACPLPSNEESLQWLQQAL 178 (328)
T ss_pred -eeeCCCcCHHHHHHHHHHhc
Confidence 79999999998888887553
No 196
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.19 E-value=2.8e-10 Score=123.19 Aligned_cols=206 Identities=14% Similarity=0.189 Sum_probs=125.4
Q ss_pred ceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEE-Ee
Q 011553 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLR-VV 257 (483)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~-v~ 257 (483)
..|++++.+.++++|+|.+..++++..++.... ++..+.+.++|+||||||||++++++|+.++..++. .+
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~n 143 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSN 143 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhh
Confidence 568999999999999999999999998876521 122334459999999999999999999988765433 11
Q ss_pred ch---HHHhhh------------cCCchHHHHHHHHHHhh----------cCCeEEEEcCCccccccccCCCCCChHHHH
Q 011553 258 GS---ELIQKY------------LGDGPKLVRELFRVADD----------LSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (483)
Q Consensus 258 ~~---~l~~~~------------~g~~~~~i~~~f~~a~~----------~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 312 (483)
.. .....| .......+..++..+.. ....||||||++.++.. .... +
T Consensus 144 pv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-------~~~~-l 215 (637)
T TIGR00602 144 PTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-------DTRA-L 215 (637)
T ss_pred hhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-------hHHH-H
Confidence 11 000000 01122334444444431 24569999999987532 1222 2
Q ss_pred HHHHH-HHHhccCCcCCCCeEEEEEeCC-CC--------------CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHc
Q 011553 313 RTMLE-LLNQLDGFDSRGDVKVILATNR-IE--------------SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS 376 (483)
Q Consensus 313 ~~l~~-lL~~l~~~~~~~~v~vI~ttn~-~~--------------~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~ 376 (483)
+.++. ... ..+.+.+|++++. +. .+.+++++..|+. +|.|.+.+.......|...+.
T Consensus 216 q~lLr~~~~------e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~ 288 (637)
T TIGR00602 216 HEILRWKYV------SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVT 288 (637)
T ss_pred HHHHHHHhh------cCCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHH
Confidence 22332 221 1234445554442 11 1336777533553 899999999997777776655
Q ss_pred CCCC--C------cccchHHHHhhccccchhhHHHHHHHHHHh
Q 011553 377 RMTL--A------DDVNLEEFVMTKDEFSGADIKTRRRIFQIH 411 (483)
Q Consensus 377 ~~~~--~------~~~~l~~la~~t~g~~~~~i~~~~r~~~~~ 411 (483)
.... . ....+..++. .+.+|++.++..++..
T Consensus 289 ~E~~~~~~~~~~p~~~~l~~I~~----~s~GDiRsAIn~LQf~ 327 (637)
T TIGR00602 289 IEAKKNGEKIKVPKKTSVELLCQ----GCSGDIRSAINSLQFS 327 (637)
T ss_pred hhhhccccccccCCHHHHHHHHH----hCCChHHHHHHHHHHH
Confidence 4211 1 1123444444 5678999988888764
No 197
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.19 E-value=9.9e-10 Score=104.82 Aligned_cols=188 Identities=16% Similarity=0.232 Sum_probs=135.2
Q ss_pred eecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC--------
Q 011553 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA-------- 251 (483)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~-------- 251 (483)
+|++++.+.+++.+.+.++....++..... ..-.++++|||+|+||.|.+.++.+++-.
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki 68 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKI 68 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheee
Confidence 578888899999999999999888886652 11135999999999999999999987621
Q ss_pred ---------------------ceEEEechHHHhhhcCCchH-HHHHHHHHHhhcCC---------eEEEEcCCccccccc
Q 011553 252 ---------------------TFLRVVGSELIQKYLGDGPK-LVRELFRVADDLSP---------SIVFIDEIDAVGTKR 300 (483)
Q Consensus 252 ---------------------~~~~v~~~~l~~~~~g~~~~-~i~~~f~~a~~~~p---------~Il~iDEiD~l~~~r 300 (483)
..++++.++ .|...+ .+.++++...+.+| .||+|.|+|.|
T Consensus 69 ~~~t~~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L---- 139 (351)
T KOG2035|consen 69 ETRTFTTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL---- 139 (351)
T ss_pred eeEEEecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh----
Confidence 122333333 233333 34555655544332 39999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCC
Q 011553 301 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTL 380 (483)
Q Consensus 301 ~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~ 380 (483)
..+.|..|-.-++-. .+++.+|+.+|..+.+-+++++ |+ ..|.+|.|+.++...++...+.+.++
T Consensus 140 -------T~dAQ~aLRRTMEkY-----s~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l 204 (351)
T KOG2035|consen 140 -------TRDAQHALRRTMEKY-----SSNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGL 204 (351)
T ss_pred -------hHHHHHHHHHHHHHH-----hcCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcc
Confidence 678888888777643 3578899999999999999998 88 48999999999999999988887776
Q ss_pred CcccchHHHHhhccccchhhHHHHHHH
Q 011553 381 ADDVNLEEFVMTKDEFSGADIKTRRRI 407 (483)
Q Consensus 381 ~~~~~l~~la~~t~g~~~~~i~~~~r~ 407 (483)
.... +++.+...-+.++++.+.-+
T Consensus 205 ~lp~---~~l~rIa~kS~~nLRrAllm 228 (351)
T KOG2035|consen 205 QLPK---ELLKRIAEKSNRNLRRALLM 228 (351)
T ss_pred cCcH---HHHHHHHHHhcccHHHHHHH
Confidence 6443 33333334445566555333
No 198
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.17 E-value=4.9e-10 Score=111.94 Aligned_cols=77 Identities=25% Similarity=0.323 Sum_probs=51.4
Q ss_pred CeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC------------CCCCChhhcCCCc
Q 011553 285 PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR------------IESLDPALLRPGR 352 (483)
Q Consensus 285 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~------------~~~ld~allr~gR 352 (483)
|+||||||++.| +-+...-|...++. .-.-+||++||+ |.-+|..|++ |
T Consensus 279 pGVLFIDEvHmL-----------DiEcFsfLnralEs------~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--R 339 (398)
T PF06068_consen 279 PGVLFIDEVHML-----------DIECFSFLNRALES------ELSPIIILATNRGITKIRGTDIISPHGIPLDLLD--R 339 (398)
T ss_dssp E-EEEEESGGGS-----------BHHHHHHHHHHHTS------TT--EEEEEES-SEEE-BTTS-EEETT--HHHHT--T
T ss_pred cceEEecchhhc-----------cHHHHHHHHHHhcC------CCCcEEEEecCceeeeccCccCcCCCCCCcchHh--h
Confidence 779999999988 66666666666642 223467888885 5668889999 9
Q ss_pred cceEEEcCCCCHHHHHHHHHHHHcCCCCC
Q 011553 353 IDRKIEFPLPDIKTRRRIFQIHTSRMTLA 381 (483)
Q Consensus 353 ~~~~i~~~~P~~~~r~~Il~~~~~~~~~~ 381 (483)
+ .+|...+++.++..+|++.++....+.
T Consensus 340 l-lII~t~py~~~ei~~Il~iR~~~E~v~ 367 (398)
T PF06068_consen 340 L-LIIRTKPYSEEEIKQILKIRAKEEDVE 367 (398)
T ss_dssp E-EEEEE----HHHHHHHHHHHHHHCT--
T ss_pred c-EEEECCCCCHHHHHHHHHhhhhhhcCc
Confidence 8 489999999999999999998776544
No 199
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.17 E-value=1.8e-10 Score=116.74 Aligned_cols=149 Identities=17% Similarity=0.224 Sum_probs=106.8
Q ss_pred Ccccccc-cHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc---------------
Q 011553 189 SYADIGG-LDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT--------------- 252 (483)
Q Consensus 189 ~~~di~G-l~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~--------------- 252 (483)
.|..|.| ++.+++.+...+.. -..++.+||+||+|+|||++|+++|+.+.+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4667777 88899999998865 2456779999999999999999999976431
Q ss_pred ---------eEEEechHHHhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHH
Q 011553 253 ---------FLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELL 319 (483)
Q Consensus 253 ---------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL 319 (483)
+..+... +. .-.-..++++.+.+.. ....|++|||+|.+ +.+.+..|+..|
T Consensus 71 ~~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----------~~~a~NaLLK~L 134 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----------TASAANSLLKFL 134 (329)
T ss_pred HHhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----------CHHHHHHHHHHh
Confidence 2222111 00 0112345555544331 23459999999998 455666666666
Q ss_pred HhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHH
Q 011553 320 NQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQI 373 (483)
Q Consensus 320 ~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~ 373 (483)
++ +..++++|++|+.+..+.+++++ |+. .++|++|+.++...++..
T Consensus 135 EE-----Pp~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 135 EE-----PSGGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cC-----CCCCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 53 45688899999999999999999 985 999999999988777764
No 200
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.14 E-value=1.6e-09 Score=117.69 Aligned_cols=146 Identities=21% Similarity=0.263 Sum_probs=87.2
Q ss_pred eEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc----CC------------cCCCCeEEEEEeCCC--CCCChhh
Q 011553 286 SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD----GF------------DSRGDVKVILATNRI--ESLDPAL 347 (483)
Q Consensus 286 ~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~----~~------------~~~~~v~vI~ttn~~--~~ld~al 347 (483)
++|||||++.| +...|..|+++|+.-. +. .-.-++.+|+++|.. ..++|+|
T Consensus 228 GtL~LDei~~L-----------~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL 296 (637)
T PRK13765 228 GVLFIDEINTL-----------DLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPAL 296 (637)
T ss_pred cEEEEeChHhC-----------CHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHH
Confidence 47778887777 5567888888886321 10 001268999999873 5678999
Q ss_pred cCCCccc---eEEEcCC--C-CHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccC
Q 011553 348 LRPGRID---RKIEFPL--P-DIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDV 421 (483)
Q Consensus 348 lr~gR~~---~~i~~~~--P-~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~ 421 (483)
.. ||. ..+.|.. + +.+.+..+++...+....... ...++...+..+.+.+....
T Consensus 297 ~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~---------l~~f~~eAVa~LI~~~~R~a--------- 356 (637)
T PRK13765 297 RS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGK---------IPHFDRDAVEEIIREAKRRA--------- 356 (637)
T ss_pred HH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccC---------CCCCCHHHHHHHHHHHHHHh---------
Confidence 88 875 4566652 2 344455555433322211100 01233444433333333211
Q ss_pred CHHHHHhcCCC--CCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 011553 422 NLEEFVMTKDE--FSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEK 468 (483)
Q Consensus 422 ~l~~la~~~~g--~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~ 468 (483)
..... +..++|..|+++|...|..+++..|+.+|+.+|+..
T Consensus 357 ------g~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 357 ------GRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred ------CCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 11111 346889999999999998888999999999888754
No 201
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.13 E-value=1.6e-09 Score=106.14 Aligned_cols=214 Identities=18% Similarity=0.261 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---------CceEEEechH------H
Q 011553 197 DAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---------ATFLRVVGSE------L 261 (483)
Q Consensus 197 ~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~---------~~~~~v~~~~------l 261 (483)
..+.+.|.+.+..|- .....++||+|++|.|||++++.++..-. .|++.+.+.. |
T Consensus 43 ~~~L~~L~~Ll~~P~----------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 43 KEALDRLEELLEYPK----------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred HHHHHHHHHHHhCCc----------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHH
Confidence 344455555555541 22345699999999999999999997542 3666664421 1
Q ss_pred Hh--------hhc-C-CchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCe
Q 011553 262 IQ--------KYL-G-DGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDV 331 (483)
Q Consensus 262 ~~--------~~~-g-~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v 331 (483)
.. .+. . .....-..+....+...+.+|+|||++.++.. +..-|+.++.+|..+.+- -.-.+
T Consensus 113 Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG--------s~~~qr~~Ln~LK~L~Ne-L~ipi 183 (302)
T PF05621_consen 113 YSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG--------SYRKQREFLNALKFLGNE-LQIPI 183 (302)
T ss_pred HHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc--------cHHHHHHHHHHHHHHhhc-cCCCe
Confidence 11 111 1 11222334455666677889999999997522 333467777777766321 11234
Q ss_pred EEEEEeCC--CCCCChhhcCCCccceEEEcCCCC-HHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHH
Q 011553 332 KVILATNR--IESLDPALLRPGRIDRKIEFPLPD-IKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIF 408 (483)
Q Consensus 332 ~vI~ttn~--~~~ld~allr~gR~~~~i~~~~P~-~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~ 408 (483)
+.++|-.. .=.-|+.+-+ ||. .+.+|.-. .++...++..+-..+++....++.
T Consensus 184 V~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~--------------------- 239 (302)
T PF05621_consen 184 VGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLA--------------------- 239 (302)
T ss_pred EEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCC---------------------
Confidence 44443322 1224577766 997 66676432 344556777777767665532211
Q ss_pred HHhhccccccccCC-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHH
Q 011553 409 QIHTSRMTLADDVN-LEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKA 465 (483)
Q Consensus 409 ~~~~~~~~~~~~~~-l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~A 465 (483)
... ...+...+.|..| ++..++..|+..|++.+...||.+.+...
T Consensus 240 -----------~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 240 -----------SPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred -----------CHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 111 2356667888775 58899999999999999999999988763
No 202
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.12 E-value=8.2e-10 Score=111.27 Aligned_cols=166 Identities=17% Similarity=0.162 Sum_probs=107.5
Q ss_pred cc-cccccHHHHHHHHHHHhcCCCChhhhhhhCCC-CCCceEEEcCCCCchHHHHHHHHHHcCC-------ceEEEec--
Q 011553 190 YA-DIGGLDAQIQEIKEAVELPLTHPELYEDIGIK-PPKGVILYGEPGTGKTLLAKAVANSTSA-------TFLRVVG-- 258 (483)
Q Consensus 190 ~~-di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~-~~~gvLL~GppGtGKT~Laraia~~l~~-------~~~~v~~-- 258 (483)
|+ +++|+++++.++.+++.... .|.. ..+.++|+||||||||+||+++|+.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 44 79999999999999887642 1222 3456899999999999999999999876 7877766
Q ss_pred --hHHHhhhcCCchHHHHHHHHHHhh------------------------------------------------------
Q 011553 259 --SELIQKYLGDGPKLVRELFRVADD------------------------------------------------------ 282 (483)
Q Consensus 259 --~~l~~~~~g~~~~~i~~~f~~a~~------------------------------------------------------ 282 (483)
+.+....++-.+..++..|.....
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~ 200 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENN 200 (361)
T ss_pred CCCCCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCc
Confidence 443332222222222222211100
Q ss_pred --------------------c--------------CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccC----
Q 011553 283 --------------------L--------------SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG---- 324 (483)
Q Consensus 283 --------------------~--------------~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~---- 324 (483)
. +-+|+-|+|+.+. +.+.+..|+.++++..-
T Consensus 201 qdi~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~-----------~~~~l~~LL~~~qE~~v~~~~ 269 (361)
T smart00763 201 QDISELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKA-----------DIKFLHPLLTATQEGNIKGTG 269 (361)
T ss_pred ccHHHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcC-----------CHHHHHHHhhhhhcceEecCC
Confidence 0 1124555555444 55667777777765321
Q ss_pred C--cCCCCeEEEEEeCCC-------CCCChhhcCCCccceEEEcCCC-CHHHHHHHHHHHHcC
Q 011553 325 F--DSRGDVKVILATNRI-------ESLDPALLRPGRIDRKIEFPLP-DIKTRRRIFQIHTSR 377 (483)
Q Consensus 325 ~--~~~~~v~vI~ttn~~-------~~ld~allr~gR~~~~i~~~~P-~~~~r~~Il~~~~~~ 377 (483)
. .-.-+.+||++||.. .....+|++ ||. .+.+|.| +..+-.+|.+..+..
T Consensus 270 ~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 270 GFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred cccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 1 112257889999876 256799999 997 8999976 677888888877764
No 203
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.9e-09 Score=108.56 Aligned_cols=95 Identities=31% Similarity=0.524 Sum_probs=74.0
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh-hhcCCc-hHHHHHHHHHHhh----cCCeEEEEcCCcccccc
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-KYLGDG-PKLVRELFRVADD----LSPSIVFIDEIDAVGTK 299 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~-~~~g~~-~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~ 299 (483)
.+|||.||+|+|||+||+.+|+-++.||...+|..|.+ .|+|+. +..+..++..|.. .+.+||||||+|+|..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 45999999999999999999999999999999999876 788875 5566667766643 35689999999999743
Q ss_pred ccC---CCCCChHHHHHHHHHHHH
Q 011553 300 RYD---AHSGGEREIQRTMLELLN 320 (483)
Q Consensus 300 r~~---~~~~~~~~~~~~l~~lL~ 320 (483)
... ..+-+...+|+.|+.+++
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllE 330 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLE 330 (564)
T ss_pred CccccccccccchhHHHHHHHHhc
Confidence 311 112223567888888886
No 204
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.11 E-value=2.4e-09 Score=118.50 Aligned_cols=167 Identities=17% Similarity=0.203 Sum_probs=99.0
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhh--------hhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC-------CceEEE
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELY--------EDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS-------ATFLRV 256 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~--------~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~-------~~~~~v 256 (483)
.|.|.+.+|+.|.-.+-.......-+ ....+....+|||+|+||||||.+|+++++... .++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 47888888877755443221110000 001234445799999999999999999998643 244444
Q ss_pred echHHHhhhcCC--chHHH-HHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc------CC--
Q 011553 257 VGSELIQKYLGD--GPKLV-RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD------GF-- 325 (483)
Q Consensus 257 ~~~~l~~~~~g~--~~~~i-~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~------~~-- 325 (483)
.+..... +.+. +...+ ...+.. ...++++|||+|.+ ....+..|+++|++-. |.
T Consensus 531 gLTa~~~-~~d~~tG~~~le~GaLvl---AdgGtL~IDEidkm-----------s~~~Q~aLlEaMEqqtIsI~KaGi~~ 595 (915)
T PTZ00111 531 GLTASIK-FNESDNGRAMIQPGAVVL---ANGGVCCIDELDKC-----------HNESRLSLYEVMEQQTVTIAKAGIVA 595 (915)
T ss_pred cccchhh-hcccccCcccccCCcEEE---cCCCeEEecchhhC-----------CHHHHHHHHHHHhCCEEEEecCCcce
Confidence 4433221 1110 00000 001111 22369999999998 5667888899886422 11
Q ss_pred cCCCCeEEEEEeCCC-------------CCCChhhcCCCccceEEE-cCCCCHHHHHHHHHHHH
Q 011553 326 DSRGDVKVILATNRI-------------ESLDPALLRPGRIDRKIE-FPLPDIKTRRRIFQIHT 375 (483)
Q Consensus 326 ~~~~~v~vI~ttn~~-------------~~ld~allr~gR~~~~i~-~~~P~~~~r~~Il~~~~ 375 (483)
.-..++.||+|+|.. -.++++|++ |||.++. ++.|+.+.-..|..+.+
T Consensus 596 tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 596 TLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred ecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 113579999999873 137799999 9987654 46777666555554433
No 205
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.6e-09 Score=105.35 Aligned_cols=95 Identities=27% Similarity=0.524 Sum_probs=71.8
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh-hhcCCchH-HHHHHHHHHhh----cCCeEEEEcCCcccccc
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-KYLGDGPK-LVRELFRVADD----LSPSIVFIDEIDAVGTK 299 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~-~~~g~~~~-~i~~~f~~a~~----~~p~Il~iDEiD~l~~~ 299 (483)
.++||.||+|||||+||+.+|+.++.||...++..+.. .|+|+.-. .+..++..|.. ...+||+|||||+++.+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 45999999999999999999999999999999988875 68887543 44445554432 24579999999999876
Q ss_pred ccCC---CCCChHHHHHHHHHHHH
Q 011553 300 RYDA---HSGGEREIQRTMLELLN 320 (483)
Q Consensus 300 r~~~---~~~~~~~~~~~l~~lL~ 320 (483)
..++ .+-+...+|++|+.++.
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiE 201 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIE 201 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHc
Confidence 5322 12223467888888886
No 206
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.07 E-value=3.1e-10 Score=119.85 Aligned_cols=153 Identities=24% Similarity=0.363 Sum_probs=100.0
Q ss_pred CcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHHHhhh
Q 011553 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQKY 265 (483)
Q Consensus 189 ~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l~~~~ 265 (483)
.+.+++|.+..++.+...+... ......++|+|++||||+++|++++.... .+|+.++|..+....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKI-----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENL 205 (445)
T ss_pred cccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHH
Confidence 4556788888888877766431 13345699999999999999999998764 589999998763221
Q ss_pred -----cCCch-------HHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc-----CC-cC
Q 011553 266 -----LGDGP-------KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD-----GF-DS 327 (483)
Q Consensus 266 -----~g~~~-------~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~-----~~-~~ 327 (483)
.|... ......|.. ...++||||||+.| ....|..|+.+++.-. +. ..
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLFLDEIGDL-----------PLNLQAKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCceeE---CCCCEEEEechhhC-----------CHHHHHHHHHHHhhCeEEeCCCCcee
Confidence 11000 000011221 23579999999999 6778899999987521 10 01
Q ss_pred CCCeEEEEEeCCC-------CCCChhhcCCCccceEEEcCCCCHHHHHH
Q 011553 328 RGDVKVILATNRI-------ESLDPALLRPGRIDRKIEFPLPDIKTRRR 369 (483)
Q Consensus 328 ~~~v~vI~ttn~~-------~~ld~allr~gR~~~~i~~~~P~~~~r~~ 369 (483)
..++.+|+||+.. ..+.+.|.. |+. .+.+..|...+|.+
T Consensus 272 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~ 317 (445)
T TIGR02915 272 PVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDG 317 (445)
T ss_pred eeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchh
Confidence 2368999999764 234455544 553 56677777777765
No 207
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.07 E-value=1e-09 Score=99.77 Aligned_cols=134 Identities=23% Similarity=0.329 Sum_probs=91.6
Q ss_pred ccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC-----------------------
Q 011553 195 GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA----------------------- 251 (483)
Q Consensus 195 Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~----------------------- 251 (483)
|++.+++.|...+.. -..+..+||+||+|+||+++|+++|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 778888999888875 256778999999999999999999987642
Q ss_pred ceEEEechHHHhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcC
Q 011553 252 TFLRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS 327 (483)
Q Consensus 252 ~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~ 327 (483)
.++.+....... .-....++.+...+... ...|++|||+|.| +.+.+.+|+..|++ +
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LEe-----p 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLEE-----P 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHS-----T
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhcC-----C
Confidence 222222211000 01234566665554332 3469999999999 67788888888874 4
Q ss_pred CCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCC
Q 011553 328 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLP 362 (483)
Q Consensus 328 ~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P 362 (483)
..++.+|++|+.++.+.+.+++ |+. .+.|++.
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RCQ-VIRFRPL 161 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TSE-EEEE---
T ss_pred CCCEEEEEEECChHHChHHHHh--hce-EEecCCC
Confidence 6789999999999999999999 985 7777654
No 208
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.06 E-value=1.7e-10 Score=99.06 Aligned_cols=112 Identities=32% Similarity=0.439 Sum_probs=62.8
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEech-HHH-hhhcCC----chHHHHHHHHHHhh-cCCeEEEEcCCcccccc
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGS-ELI-QKYLGD----GPKLVRELFRVADD-LSPSIVFIDEIDAVGTK 299 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~-~l~-~~~~g~----~~~~i~~~f~~a~~-~~p~Il~iDEiD~l~~~ 299 (483)
+|||.|+||+|||++|+++|..++..|.+|.+. ++. ....|. ... ..|..... .-..|+++|||.+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNra--- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRA--- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccC---
Confidence 489999999999999999999999999998764 222 111111 000 00000000 00249999999776
Q ss_pred ccCCCCCChHHHHHHHHHHHHhcc----C--CcCCCCeEEEEEeCCCC-----CCChhhcCCCccc
Q 011553 300 RYDAHSGGEREIQRTMLELLNQLD----G--FDSRGDVKVILATNRIE-----SLDPALLRPGRID 354 (483)
Q Consensus 300 r~~~~~~~~~~~~~~l~~lL~~l~----~--~~~~~~v~vI~ttn~~~-----~ld~allr~gR~~ 354 (483)
....|+++++.+.+-. + +.-...+.||+|-|..+ .++.++++ ||-
T Consensus 75 --------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 75 --------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp ---------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred --------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 6678999999998632 1 11234688999999865 58888988 873
No 209
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.03 E-value=9.4e-10 Score=117.01 Aligned_cols=218 Identities=19% Similarity=0.265 Sum_probs=128.8
Q ss_pred CcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHHHhhh
Q 011553 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQKY 265 (483)
Q Consensus 189 ~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l~~~~ 265 (483)
.+.+++|.+..++.+...+... ......++|+|++|||||++|++++.... .+|+.++|+.+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~-----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRL-----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHHH-----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 4567888888887777666431 23355699999999999999999999764 599999998763211
Q ss_pred -----cCCchHH-------HHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCC------cC
Q 011553 266 -----LGDGPKL-------VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF------DS 327 (483)
Q Consensus 266 -----~g~~~~~-------i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~------~~ 327 (483)
.|..... ....|.. ...+.|||||++.| ....|..|+.+++.-.-. ..
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~---a~~Gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~ 270 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQ---ADGGTLFLDEIGDM-----------PLDVQTRLLRVLADGQFYRVGGYAPV 270 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeE---CCCCEEEEeccccC-----------CHHHHHHHHHHHhcCcEEeCCCCCeE
Confidence 1111000 0011222 23479999999999 667888888888743210 01
Q ss_pred CCCeEEEEEeCCC-------CCCChhhcCCCccceEEEcCCCCHHHHHH----HHHHHHcCCCCCcccchHHHHhhcccc
Q 011553 328 RGDVKVILATNRI-------ESLDPALLRPGRIDRKIEFPLPDIKTRRR----IFQIHTSRMTLADDVNLEEFVMTKDEF 396 (483)
Q Consensus 328 ~~~v~vI~ttn~~-------~~ld~allr~gR~~~~i~~~~P~~~~r~~----Il~~~~~~~~~~~~~~l~~la~~t~g~ 396 (483)
..++.+|+||+.. ..+.+.|.. |+. .+.+..|...+|.+ ++..++......... ...++
T Consensus 271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~-------~~~~~ 340 (469)
T PRK10923 271 KVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGV-------EAKLL 340 (469)
T ss_pred EeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCC-------CCCCc
Confidence 2368999999763 234566666 664 45666666655554 444444332100000 00011
Q ss_pred chhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 011553 397 SGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAK 466 (483)
Q Consensus 397 ~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al 466 (483)
+. ..+..+....=--+-++++++++.|...+ ....|+.+|+...+
T Consensus 341 ~~----------------------~a~~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 341 HP----------------------ETEAALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred CH----------------------HHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 11 11222332221124588999998887554 45678888886544
No 210
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=3.5e-09 Score=106.36 Aligned_cols=144 Identities=18% Similarity=0.252 Sum_probs=103.1
Q ss_pred cHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc-----------------------
Q 011553 196 LDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT----------------------- 252 (483)
Q Consensus 196 l~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~----------------------- 252 (483)
+....+.|...+.. -..+.++||+||+|+||+++|+++|..+.+.
T Consensus 7 ~~~~~~~l~~~~~~------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HP 74 (325)
T PRK06871 7 LQPTYQQITQAFQQ------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHP 74 (325)
T ss_pred hHHHHHHHHHHHHc------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 55667777777764 2456789999999999999999999976431
Q ss_pred -eEEEechHHHhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcC
Q 011553 253 -FLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS 327 (483)
Q Consensus 253 -~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~ 327 (483)
|+.+...+ ++ .-.-..++++.+.+.. ....|++||++|.| +...+..|+..|++ +
T Consensus 75 D~~~i~p~~--~~--~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m-----------~~~AaNaLLKtLEE-----P 134 (325)
T PRK06871 75 DFHILEPID--NK--DIGVDQVREINEKVSQHAQQGGNKVVYIQGAERL-----------TEAAANALLKTLEE-----P 134 (325)
T ss_pred CEEEEcccc--CC--CCCHHHHHHHHHHHhhccccCCceEEEEechhhh-----------CHHHHHHHHHHhcC-----C
Confidence 22221100 00 0123455665544432 23359999999999 55666777777764 5
Q ss_pred CCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHH
Q 011553 328 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIH 374 (483)
Q Consensus 328 ~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~ 374 (483)
..++++|++|+.++.+.|.+++ |+. .+.|++|+.++....+...
T Consensus 135 p~~~~fiL~t~~~~~llpTI~S--RC~-~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 135 RPNTYFLLQADLSAALLPTIYS--RCQ-TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCeEEEEEECChHhCchHHHh--hce-EEeCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999 995 8999999999888777754
No 211
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.00 E-value=1.8e-08 Score=97.15 Aligned_cols=135 Identities=20% Similarity=0.225 Sum_probs=92.7
Q ss_pred CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC------------CCCCChhhcCCC
Q 011553 284 SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR------------IESLDPALLRPG 351 (483)
Q Consensus 284 ~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~------------~~~ld~allr~g 351 (483)
.|+||||||++.| +-+...-|+..+.. .-.-++|++||+ |.-+|-.|++
T Consensus 288 vpGVLFIDEvHML-----------DIEcFsFlNrAlE~------d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD-- 348 (454)
T KOG2680|consen 288 VPGVLFIDEVHML-----------DIECFSFLNRALEN------DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD-- 348 (454)
T ss_pred ccceEEEeeehhh-----------hhHHHHHHHHHhhh------ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--
Confidence 3678999998877 44444444544431 112346666664 5668888888
Q ss_pred ccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCC
Q 011553 352 RIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKD 431 (483)
Q Consensus 352 R~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~ 431 (483)
|+- +|...+++.++...||++.+......-+ +..+..+.....
T Consensus 349 R~l-II~t~py~~~d~~~IL~iRc~EEdv~m~------------------------------------~~A~d~Lt~i~~ 391 (454)
T KOG2680|consen 349 RML-IISTQPYTEEDIKKILRIRCQEEDVEMN------------------------------------PDALDLLTKIGE 391 (454)
T ss_pred hhh-eeecccCcHHHHHHHHHhhhhhhccccC------------------------------------HHHHHHHHHhhh
Confidence 884 8888899999999999998876543321 112233333333
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhcc
Q 011553 432 EFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKK 474 (483)
Q Consensus 432 g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~~ 474 (483)
.-|-+-...|+..|...+.++....+..+|+..+++-.+..++
T Consensus 392 ~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~LFlD~~R 434 (454)
T KOG2680|consen 392 ATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRLFLDEKR 434 (454)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHHhhhhh
Confidence 4455666678888888999999999999999999998876543
No 212
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.99 E-value=2.9e-09 Score=112.77 Aligned_cols=152 Identities=24% Similarity=0.410 Sum_probs=97.0
Q ss_pred cccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHHHhhh-
Q 011553 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQKY- 265 (483)
Q Consensus 190 ~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l~~~~- 265 (483)
+.+++|.+..+..+.+.+... ......++++|++||||+++|++++.... .+|+.++|..+....
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKI-----------ALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred ccceecccHHHhHHHHHHHHH-----------cCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 445777777777766655431 23345699999999999999999998654 599999998763321
Q ss_pred ----cCCchHH-------HHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc--CCc----CC
Q 011553 266 ----LGDGPKL-------VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD--GFD----SR 328 (483)
Q Consensus 266 ----~g~~~~~-------i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~--~~~----~~ 328 (483)
.|..... ....|.. ...++|||||||.+ ....|..|+.++..-. ... ..
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ld~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~~ 276 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFER---ANEGTLLLDEIGEM-----------PLVLQAKLLRILQEREFERIGGHQTIK 276 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEE---CCCCEEEEechhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 1110000 0011222 23469999999999 6678888888887522 000 12
Q ss_pred CCeEEEEEeCCCC-------CCChhhcCCCccceEEEcCCCCHHHHHH
Q 011553 329 GDVKVILATNRIE-------SLDPALLRPGRIDRKIEFPLPDIKTRRR 369 (483)
Q Consensus 329 ~~v~vI~ttn~~~-------~ld~allr~gR~~~~i~~~~P~~~~r~~ 369 (483)
.++.+|+||+..- .+.+.+.. |+. .+.+..|...+|.+
T Consensus 277 ~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~-~~~i~~ppLreR~~ 321 (457)
T PRK11361 277 VDIRIIAATNRDLQAMVKEGTFREDLFY--RLN-VIHLILPPLRDRRE 321 (457)
T ss_pred eceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-cceecCCChhhchh
Confidence 3689999998631 23444444 443 56777777777754
No 213
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.97 E-value=6.8e-09 Score=112.02 Aligned_cols=205 Identities=16% Similarity=0.140 Sum_probs=132.2
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCC--ceEEEechHHHhhhcCCch--HHH--------HHHHHHHhhcCCeEEEEcCC
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSELIQKYLGDGP--KLV--------RELFRVADDLSPSIVFIDEI 293 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~~~~l~~~~~g~~~--~~i--------~~~f~~a~~~~p~Il~iDEi 293 (483)
.||+|.|++|||||+++++++.-+.. ||+.+..+--....+|... ..+ ..++..| ..+||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA---DGGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec---cCCEEEecCc
Confidence 57999999999999999999998865 7776644332233344321 000 1122222 2269999999
Q ss_pred ccccccccCCCCCChHHHHHHHHHHHHhc------cCCc--CCCCeEEEEEeCCC---CCCChhhcCCCccceEEEcCCC
Q 011553 294 DAVGTKRYDAHSGGEREIQRTMLELLNQL------DGFD--SRGDVKVILATNRI---ESLDPALLRPGRIDRKIEFPLP 362 (483)
Q Consensus 294 D~l~~~r~~~~~~~~~~~~~~l~~lL~~l------~~~~--~~~~v~vI~ttn~~---~~ld~allr~gR~~~~i~~~~P 362 (483)
..+ ....+..|++.+.+- ++.. -..++++|++-|.. ..+++++++ ||+..+.++.|
T Consensus 103 n~~-----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~ 169 (584)
T PRK13406 103 ERL-----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGL 169 (584)
T ss_pred ccC-----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCC
Confidence 877 667888888888742 2211 12468888874432 348899999 99999999998
Q ss_pred CHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhc--CCCC-CHHHHH
Q 011553 363 DIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMT--KDEF-SGADIK 439 (483)
Q Consensus 363 ~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~--~~g~-s~~di~ 439 (483)
+..+... ...+..+|..++..+ ....+. +..+..+... .-|+ |.+-..
T Consensus 170 ~~~~~~~------------------------~~~~~~~I~~AR~rl----~~v~v~-~~~l~~i~~~~~~~gv~S~Ra~i 220 (584)
T PRK13406 170 ALRDARE------------------------IPIDADDIAAARARL----PAVGPP-PEAIAALCAAAAALGIASLRAPL 220 (584)
T ss_pred ChHHhcc------------------------cCCCHHHHHHHHHHH----ccCCCC-HHHHHHHHHHHHHhCCCCcCHHH
Confidence 8765421 011122333333322 112111 1111222111 2355 778888
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhccC
Q 011553 440 AICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 475 (483)
Q Consensus 440 ~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~~~ 475 (483)
.+++-|..+|..+++..|+.+|+.+|+.-++.....
T Consensus 221 ~llraARa~AaL~Gr~~V~~~dv~~Aa~lvL~hR~~ 256 (584)
T PRK13406 221 LALRAARAAAALAGRTAVEEEDLALAARLVLAPRAT 256 (584)
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhcc
Confidence 899999999999999999999999999999976654
No 214
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=3.6e-09 Score=107.03 Aligned_cols=133 Identities=20% Similarity=0.282 Sum_probs=93.3
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCCce-------------------------EEEechHHHh--------------
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATF-------------------------LRVVGSELIQ-------------- 263 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~~~-------------------------~~v~~~~l~~-------------- 263 (483)
..+.++||+||+|+||+++|+++|..+.+.. +.+.......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 5577899999999999999999998775421 1111110000
Q ss_pred hhcC---------CchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCC
Q 011553 264 KYLG---------DGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD 330 (483)
Q Consensus 264 ~~~g---------~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~ 330 (483)
.-.| -.-..++.+...+... ...|++||++|.| +......|+..|++ +..+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------NVAAANALLKTLEE-----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------CHHHHHHHHHHhcC-----CCcC
Confidence 0000 1123455555544322 2349999999999 55566666666653 5678
Q ss_pred eEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHH
Q 011553 331 VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIH 374 (483)
Q Consensus 331 v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~ 374 (483)
++||++|++++.+.|.+++ |+ ..+.|++|+.++..+.+...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 9999999999999999999 99 49999999999988888654
No 215
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=6.2e-09 Score=105.43 Aligned_cols=144 Identities=13% Similarity=0.149 Sum_probs=101.3
Q ss_pred cHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC------------------------
Q 011553 196 LDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA------------------------ 251 (483)
Q Consensus 196 l~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~------------------------ 251 (483)
+..+.+++...+.. -..+.++||+||+|+||+++|.++|..+-+
T Consensus 7 l~~~~~~l~~~~~~------------~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HP 74 (334)
T PRK07993 7 LRPDYEQLVGSYQA------------GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_pred ChHHHHHHHHHHHc------------CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 45566667666654 255778999999999999999999997643
Q ss_pred ceEEEechHHHhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcC
Q 011553 252 TFLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS 327 (483)
Q Consensus 252 ~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~ 327 (483)
.|+.+....- . ..-.-..++.+.+.+.. ....|++||++|.| +....+.|+..|++ +
T Consensus 75 D~~~i~p~~~-~--~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----P 135 (334)
T PRK07993 75 DYYTLTPEKG-K--SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALL-----------TDAAANALLKTLEE-----P 135 (334)
T ss_pred CEEEEecccc-c--ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhh-----------CHHHHHHHHHHhcC-----C
Confidence 1222211000 0 00123345555544432 23459999999999 55667777777764 5
Q ss_pred CCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHH
Q 011553 328 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQI 373 (483)
Q Consensus 328 ~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~ 373 (483)
..+++||.+|+.++.+.|.+++ |+. .+.|++|+.++....+..
T Consensus 136 p~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 136 PENTWFFLACREPARLLATLRS--RCR-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred CCCeEEEEEECChhhChHHHHh--ccc-cccCCCCCHHHHHHHHHH
Confidence 6789999999999999999999 997 789999998888777754
No 216
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.94 E-value=2.1e-08 Score=102.28 Aligned_cols=223 Identities=21% Similarity=0.226 Sum_probs=142.4
Q ss_pred ccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC----C-ceEEEechHHH---
Q 011553 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS----A-TFLRVVGSELI--- 262 (483)
Q Consensus 191 ~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~----~-~~~~v~~~~l~--- 262 (483)
..+.|.+..++.+++++..++. ...+.++.+.|.||||||.+...+..... . ..++++|..+.
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle---------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLE---------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhh---------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 3467999999999999987543 35577799999999999999987776543 2 44777776431
Q ss_pred -------hhh----cCCc-hHHHHHHHHHH-hhc-CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCC
Q 011553 263 -------QKY----LGDG-PKLVRELFRVA-DDL-SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSR 328 (483)
Q Consensus 263 -------~~~----~g~~-~~~i~~~f~~a-~~~-~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~ 328 (483)
+.+ .+.. .......|..- .+. .+-|+++||+|.|+... +.+|.. +-++..+ +.
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----------~~vLy~-lFewp~l-p~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----------QTVLYT-LFEWPKL-PN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----------cceeee-ehhcccC-Cc
Confidence 122 1111 11222333332 222 36799999999997443 122222 2233333 35
Q ss_pred CCeEEEEEeCCCCCCChhhcC----CCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHH
Q 011553 329 GDVKVILATNRIESLDPALLR----PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTR 404 (483)
Q Consensus 329 ~~v~vI~ttn~~~~ld~allr----~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~ 404 (483)
.++++|+.+|..+.-|..|-+ -+--+..+.|++|+.++..+|++..+.........
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~-------------------- 347 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFL-------------------- 347 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccc--------------------
Confidence 678899999988766654432 12234689999999999999999988876654421
Q ss_pred HHHHHHhhccccccccCCHHHHHhcCCCCCHH--HHHHHHHHHHHHHHHhcCC----------------CccHHHHHHHH
Q 011553 405 RRIFQIHTSRMTLADDVNLEEFVMTKDEFSGA--DIKAICTEAGLLALRERRM----------------KVTHTDFKKAK 466 (483)
Q Consensus 405 ~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~--di~~l~~~A~~~A~~~~~~----------------~it~ed~~~Al 466 (483)
...++..|....+.||. .+-.+|+.|...|-.+.+. .|..+++..++
T Consensus 348 ---------------~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~vi 412 (529)
T KOG2227|consen 348 ---------------NAAIELCARKVAAPSGDLRKALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVI 412 (529)
T ss_pred ---------------hHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHh
Confidence 22345556666677753 2333788888887655432 34567777777
Q ss_pred HHHH
Q 011553 467 EKVM 470 (483)
Q Consensus 467 ~~~~ 470 (483)
.++-
T Consensus 413 Sk~~ 416 (529)
T KOG2227|consen 413 SKVD 416 (529)
T ss_pred hhhc
Confidence 6654
No 217
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=9.2e-09 Score=103.18 Aligned_cols=147 Identities=20% Similarity=0.249 Sum_probs=101.7
Q ss_pred cHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCce-E---EEechHHHh-------h
Q 011553 196 LDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATF-L---RVVGSELIQ-------K 264 (483)
Q Consensus 196 l~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~-~---~v~~~~l~~-------~ 264 (483)
+..+.+.+...+.. -..+.++||+||+|+||+++|.++|+.+.+.- . ...+..++. .
T Consensus 9 ~~~~~~~l~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~ 76 (319)
T PRK08769 9 QQRAYDQTVAALDA------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQ 76 (319)
T ss_pred HHHHHHHHHHHHHc------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEE
Confidence 56677777777764 25577899999999999999999998764310 0 000111110 0
Q ss_pred hc-------C------CchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcC
Q 011553 265 YL-------G------DGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS 327 (483)
Q Consensus 265 ~~-------g------~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~ 327 (483)
++ | -.-..++++.+.+... .-.|++||++|.| +...++.|+..|++ +
T Consensus 77 ~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----P 140 (319)
T PRK08769 77 LVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-----------NRAACNALLKTLEE-----P 140 (319)
T ss_pred EEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-----------CHHHHHHHHHHhhC-----C
Confidence 00 1 1133455555544332 2359999999999 55666777777764 4
Q ss_pred CCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHH
Q 011553 328 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQI 373 (483)
Q Consensus 328 ~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~ 373 (483)
..+++||++|+.++.+.|.+++ |+. .+.|+.|+.++-...+..
T Consensus 141 p~~~~fiL~~~~~~~lLpTIrS--RCq-~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 141 SPGRYLWLISAQPARLPATIRS--RCQ-RLEFKLPPAHEALAWLLA 183 (319)
T ss_pred CCCCeEEEEECChhhCchHHHh--hhe-EeeCCCcCHHHHHHHHHH
Confidence 5688999999999999999999 995 899999999888777764
No 218
>PRK15115 response regulator GlrR; Provisional
Probab=98.93 E-value=8.4e-09 Score=108.93 Aligned_cols=147 Identities=24% Similarity=0.386 Sum_probs=92.2
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHHHhhhcCC
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQKYLGD 268 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l~~~~~g~ 268 (483)
.++|.+..+.++.+.+... ......++|+|++|||||++|++++.... .+|+.++|..+.....
T Consensus 135 ~lig~s~~~~~~~~~~~~~-----------a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~-- 201 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMV-----------AQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL-- 201 (444)
T ss_pred cccccCHHHHHHHHHHHhh-----------ccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH--
Confidence 3556665555555444331 12344599999999999999999998754 6999999987532211
Q ss_pred chHHHHHHHHH---------------HhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccC--Cc----C
Q 011553 269 GPKLVRELFRV---------------ADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG--FD----S 327 (483)
Q Consensus 269 ~~~~i~~~f~~---------------a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~--~~----~ 327 (483)
-..+|.. ......++|||||||.| +...|..|+.++..-.. .. .
T Consensus 202 ----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~g~~~~~ 266 (444)
T PRK15115 202 ----ESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM-----------PAPLQVKLLRVLQERKVRPLGSNRDI 266 (444)
T ss_pred ----HHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccC-----------CHHHHHHHHHHHhhCCEEeCCCCcee
Confidence 1112211 11123479999999999 66788888888864221 10 1
Q ss_pred CCCeEEEEEeCCC-------CCCChhhcCCCccceEEEcCCCCHHHHHH
Q 011553 328 RGDVKVILATNRI-------ESLDPALLRPGRIDRKIEFPLPDIKTRRR 369 (483)
Q Consensus 328 ~~~v~vI~ttn~~-------~~ld~allr~gR~~~~i~~~~P~~~~r~~ 369 (483)
..++.+|+||+.. ..+.+.|.. |+. .+.+..|...+|.+
T Consensus 267 ~~~~rii~~~~~~l~~~~~~~~f~~~l~~--~l~-~~~i~lPpLr~R~e 312 (444)
T PRK15115 267 DIDVRIISATHRDLPKAMARGEFREDLYY--RLN-VVSLKIPALAERTE 312 (444)
T ss_pred eeeEEEEEeCCCCHHHHHHcCCccHHHHH--hhc-eeeecCCChHhccc
Confidence 2368999999852 122233333 343 56777788888764
No 219
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.93 E-value=3.1e-09 Score=112.78 Aligned_cols=217 Identities=19% Similarity=0.299 Sum_probs=125.2
Q ss_pred ccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHHHhhh--
Q 011553 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQKY-- 265 (483)
Q Consensus 191 ~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l~~~~-- 265 (483)
..++|.+...+++...+... ......+++.|++||||+++|++++.... .+|+.++|..+....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~-----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRL-----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred cceeecCHHHHHHHHHHHHH-----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 45788888887777666431 12345699999999999999999998754 599999997763321
Q ss_pred ---cCCchH----HHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCC------cCCCCeE
Q 011553 266 ---LGDGPK----LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF------DSRGDVK 332 (483)
Q Consensus 266 ---~g~~~~----~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~------~~~~~v~ 332 (483)
.|.... ..............++||||||+.| ..+.|..|++++..-... ....++.
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l-----------~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~r 271 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDM-----------PLDAQTRLLRVLADGEFYRVGGRTPIKVDVR 271 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhC-----------CHHHHHHHHHHHhcCcEEECCCCceeeeeeE
Confidence 111000 0000000011223579999999999 567788899888743211 0123688
Q ss_pred EEEEeCCC-------CCCChhhcCCCccceEEEcCCCCHHHH----HHHHHHHHcCCCCCcccchHHHHhhccccchhhH
Q 011553 333 VILATNRI-------ESLDPALLRPGRIDRKIEFPLPDIKTR----RRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADI 401 (483)
Q Consensus 333 vI~ttn~~-------~~ld~allr~gR~~~~i~~~~P~~~~r----~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i 401 (483)
+|+||+.. ..+.+.|.. |+. .+.+..|...+| ..++..++........ ....+++..
T Consensus 272 ii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~-------~~~~~~~~~-- 339 (463)
T TIGR01818 272 IVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELD-------VEPKLLDPE-- 339 (463)
T ss_pred EEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhC-------CCCCCcCHH--
Confidence 99999753 234445555 554 345555554444 3355444433210000 000111111
Q ss_pred HHHHHHHHHhhccccccccCCHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 011553 402 KTRRRIFQIHTSRMTLADDVNLEEFVMTKDEF--SGADIKAICTEAGLLALRERRMKVTHTDFKKAK 466 (483)
Q Consensus 402 ~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~--s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al 466 (483)
.+..|... +| +-++|.++++.|...+ ....|+.+|+...+
T Consensus 340 --------------------a~~~L~~~--~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 340 --------------------ALERLKQL--RWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred --------------------HHHHHHhC--CCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 12223322 33 3488999999887654 44678888887655
No 220
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.92 E-value=1.4e-08 Score=100.15 Aligned_cols=155 Identities=26% Similarity=0.414 Sum_probs=104.9
Q ss_pred CCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHH
Q 011553 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSEL 261 (483)
Q Consensus 185 ~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l 261 (483)
.+...|+.|++.+..++.+.+..... .-....+||.|.+||||.++|++.+.... .||+-++|..+
T Consensus 198 ~~~~~F~~~v~~S~~mk~~v~qA~k~-----------AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~l 266 (511)
T COG3283 198 QDVSGFEQIVAVSPKMKHVVEQAQKL-----------AMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASL 266 (511)
T ss_pred ccccchHHHhhccHHHHHHHHHHHHh-----------hccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCC
Confidence 35567888888888888776544321 11223499999999999999999988664 59999999765
Q ss_pred Hhh-----hcCCc--hHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcC-------
Q 011553 262 IQK-----YLGDG--PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS------- 327 (483)
Q Consensus 262 ~~~-----~~g~~--~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~------- 327 (483)
... ..|.. ...-..+|+.|.. +.+|+|||..+ +..+|..|+.+|+. +...
T Consensus 267 Pe~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm-----------Sp~lQaKLLRFL~D--GtFRRVGee~E 330 (511)
T COG3283 267 PEDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM-----------SPRLQAKLLRFLND--GTFRRVGEDHE 330 (511)
T ss_pred chhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc-----------CHHHHHHHHHHhcC--CceeecCCcce
Confidence 432 12222 1233457887765 79999999888 67899999999973 3211
Q ss_pred -CCCeEEEEEeCCC--CC-----CChhhcCCCccceEEEcCCCCHHHHHH
Q 011553 328 -RGDVKVILATNRI--ES-----LDPALLRPGRIDRKIEFPLPDIKTRRR 369 (483)
Q Consensus 328 -~~~v~vI~ttn~~--~~-----ld~allr~gR~~~~i~~~~P~~~~r~~ 369 (483)
.-+|.|||||..+ +. +-..|.- |.. ++.+..|...+|..
T Consensus 331 v~vdVRVIcatq~nL~~lv~~g~fReDLfy--RLN-VLtl~~PpLRer~~ 377 (511)
T COG3283 331 VHVDVRVICATQVNLVELVQKGKFREDLFY--RLN-VLTLNLPPLRERPQ 377 (511)
T ss_pred EEEEEEEEecccccHHHHHhcCchHHHHHH--Hhh-eeeecCCccccCcc
Confidence 1269999999653 22 2223333 443 77777777777653
No 221
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=1.3e-08 Score=102.00 Aligned_cols=145 Identities=16% Similarity=0.197 Sum_probs=103.1
Q ss_pred ccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC-----------------------
Q 011553 195 GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA----------------------- 251 (483)
Q Consensus 195 Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~----------------------- 251 (483)
-+.++.+.+...+.. -..+.++||+||.|+||+++|+++|..+-+
T Consensus 7 Wl~~~~~~l~~~~~~------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 7 WLVPVWQNWKAGLDA------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHP 74 (319)
T ss_pred cHHHHHHHHHHHHHc------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 356777788777764 255778999999999999999999986642
Q ss_pred ceEEEechHHHhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcC
Q 011553 252 TFLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS 327 (483)
Q Consensus 252 ~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~ 327 (483)
.|+.+.... .++. -.-..++.+...+.. ....|++||++|.| +....+.|+..|++ +
T Consensus 75 D~~~i~p~~-~~~~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----P 135 (319)
T PRK06090 75 DLHVIKPEK-EGKS--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAM-----------NESASNALLKTLEE-----P 135 (319)
T ss_pred CEEEEecCc-CCCc--CCHHHHHHHHHHHhhCcccCCceEEEecchhhh-----------CHHHHHHHHHHhcC-----C
Confidence 122222110 0000 112345555444432 22359999999999 55566777777764 5
Q ss_pred CCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHH
Q 011553 328 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQI 373 (483)
Q Consensus 328 ~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~ 373 (483)
..++++|++|+.++.+.|.+++ |+. .+.|++|+.++..+.+..
T Consensus 136 p~~t~fiL~t~~~~~lLpTI~S--RCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 136 APNCLFLLVTHNQKRLLPTIVS--RCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCeEEEEEECChhhChHHHHh--cce-eEeCCCCCHHHHHHHHHH
Confidence 6789999999999999999999 996 899999999988887764
No 222
>PRK08116 hypothetical protein; Validated
Probab=98.90 E-value=9.3e-09 Score=101.15 Aligned_cols=123 Identities=22% Similarity=0.319 Sum_probs=79.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhhhc----CCchHHHHHHHHHHhhcCCeEEEEcCCcccc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYL----GDGPKLVRELFRVADDLSPSIVFIDEIDAVG 297 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~~~----g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~ 297 (483)
+.+++|+|++|||||+||.+||+++ +.+++.++.+++..... +........++.... ...+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4579999999999999999999975 67888888888766432 111112223333322 33599999995431
Q ss_pred ccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCC-CC----CChhhcCCCcc---ceEEEcCCCCH
Q 011553 298 TKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI-ES----LDPALLRPGRI---DRKIEFPLPDI 364 (483)
Q Consensus 298 ~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~-~~----ld~allr~gR~---~~~i~~~~P~~ 364 (483)
.....+..|..+++..- ..+..+|+|||.+ +. ++..+.+ |+ ...|.+..+|.
T Consensus 192 ---------~t~~~~~~l~~iin~r~----~~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 ---------DTEWAREKVYNIIDSRY----RKGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ---------CCHHHHHHHHHHHHHHH----HCCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 13345667777777532 1234588888863 22 4566666 64 34577777775
No 223
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.90 E-value=2.7e-09 Score=94.34 Aligned_cols=105 Identities=30% Similarity=0.543 Sum_probs=75.4
Q ss_pred ccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC---ceEEEechHHHhhhcCCchH
Q 011553 195 GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA---TFLRVVGSELIQKYLGDGPK 271 (483)
Q Consensus 195 Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~---~~~~v~~~~l~~~~~g~~~~ 271 (483)
|.+..++++++.+... ......|||+|++||||+++|++++..... +|+.++|..+.
T Consensus 2 G~S~~~~~l~~~l~~~-----------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERL-----------AKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp -SCHHHHHHHHHHHHH-----------HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCHHHHHHHHHHHHH-----------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 5666777777766542 133556999999999999999999997764 67777776532
Q ss_pred HHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC
Q 011553 272 LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (483)
Q Consensus 272 ~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~ 339 (483)
.+++..+ ..++|||+|+|.+ +.+.|..|.+++...+ ..++.+|++|..
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~----~~~~RlI~ss~~ 109 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRL-----------SPEAQRRLLDLLKRQE----RSNVRLIASSSQ 109 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS------------HHHHHHHHHHHHHCT----TTTSEEEEEECC
T ss_pred --HHHHHHc---CCCEEEECChHHC-----------CHHHHHHHHHHHHhcC----CCCeEEEEEeCC
Confidence 3345554 4579999999999 6778899999888632 456788888865
No 224
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.89 E-value=3.4e-08 Score=104.99 Aligned_cols=195 Identities=21% Similarity=0.272 Sum_probs=122.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcC----------CceEEEechHHHh----------hhcCCch------HHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTS----------ATFLRVVGSELIQ----------KYLGDGP------KLVRELFRVA 280 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~----------~~~~~v~~~~l~~----------~~~g~~~------~~i~~~f~~a 280 (483)
.+.+.|-||||||..++.|-..+. ..|+.+++-.+.. .+.|+.. ..+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 588999999999999999988553 3678887755432 2233321 1122223311
Q ss_pred -hhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcC---CCccc-e
Q 011553 281 -DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLR---PGRID-R 355 (483)
Q Consensus 281 -~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr---~gR~~-~ 355 (483)
....++||+|||+|.|..+. |.+|..+++- -. .+..+++||+.+|..+ ++..++- ..|++ .
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdW-pt-~~~sKLvvi~IaNTmd-lPEr~l~nrvsSRlg~t 569 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDW-PT-LKNSKLVVIAIANTMD-LPERLLMNRVSSRLGLT 569 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcC-Cc-CCCCceEEEEeccccc-CHHHHhccchhhhccce
Confidence 22347899999999997543 4555555531 11 2356788888888755 3333332 12554 4
Q ss_pred EEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCH
Q 011553 356 KIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSG 435 (483)
Q Consensus 356 ~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~ 435 (483)
.|.|.+++..+..+|+...+.....-. ....+-++......||
T Consensus 570 Ri~F~pYth~qLq~Ii~~RL~~~~~f~-------------------------------------~~aielvarkVAavSG 612 (767)
T KOG1514|consen 570 RICFQPYTHEQLQEIISARLKGLDAFE-------------------------------------NKAIELVARKVAAVSG 612 (767)
T ss_pred eeecCCCCHHHHHHHHHHhhcchhhcc-------------------------------------hhHHHHHHHHHHhccc
Confidence 889999999999999998887662111 1111122222223333
Q ss_pred --HHHHHHHHHHHHHHHHhcC-------CCccHHHHHHHHHHHHhh
Q 011553 436 --ADIKAICTEAGLLALRERR-------MKVTHTDFKKAKEKVMFK 472 (483)
Q Consensus 436 --~di~~l~~~A~~~A~~~~~-------~~it~ed~~~Al~~~~~~ 472 (483)
+....+|++|...|..+.. ..|+.-|+.+|+..+...
T Consensus 613 DaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~ 658 (767)
T KOG1514|consen 613 DARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLAS 658 (767)
T ss_pred cHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhh
Confidence 3344589999888875544 568999999999988754
No 225
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=5.7e-09 Score=107.31 Aligned_cols=142 Identities=24% Similarity=0.315 Sum_probs=92.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEechH-HHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCC
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSE-LIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA 303 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~-l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~ 303 (483)
-.++||+||||+|||.||..+|...+.||+.+-..+ +.+-.-...-..+..+|+.|....-+||++|+|+.|..--
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v--- 614 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV--- 614 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc---
Confidence 345999999999999999999999999999986654 2221111112457889999999988999999999986322
Q ss_pred CCCChHHHHHHHHHHHHhccCCcCCC-CeEEEEEeCCCCCCC-hhhcCCCccceEEEcCCCCH-HHHHHHHH
Q 011553 304 HSGGEREIQRTMLELLNQLDGFDSRG-DVKVILATNRIESLD-PALLRPGRIDRKIEFPLPDI-KTRRRIFQ 372 (483)
Q Consensus 304 ~~~~~~~~~~~l~~lL~~l~~~~~~~-~v~vI~ttn~~~~ld-~allr~gR~~~~i~~~~P~~-~~r~~Il~ 372 (483)
.-+.+....++-.|+-.+....+.+ +.+|++||.+.+.|. -.++. .|+..+.+|..+. ++..+++.
T Consensus 615 -pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 615 -PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred -ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 2222222222223333334444444 466666666544433 34555 7888899987654 55555554
No 226
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.88 E-value=4e-08 Score=104.67 Aligned_cols=210 Identities=16% Similarity=0.243 Sum_probs=124.0
Q ss_pred ceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEe-
Q 011553 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVV- 257 (483)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~- 257 (483)
.+|++++.+.+.+|+.--..-+++++.++..-+. +....+-+||+||||||||++++.+|++++..+.+-.
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~n 78 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWIN 78 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecC
Confidence 5689999999999999998888888888875211 2223445889999999999999999999987665532
Q ss_pred chHHH------hhhcCCch---------HHHHHH-HHHHhh-----------cCCeEEEEcCCccccccccCCCCCChHH
Q 011553 258 GSELI------QKYLGDGP---------KLVREL-FRVADD-----------LSPSIVFIDEIDAVGTKRYDAHSGGERE 310 (483)
Q Consensus 258 ~~~l~------~~~~g~~~---------~~i~~~-f~~a~~-----------~~p~Il~iDEiD~l~~~r~~~~~~~~~~ 310 (483)
...+. ..|.+... .....+ +..++. ..+.||+|||+-.++... ...
T Consensus 79 p~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-------~~~ 151 (519)
T PF03215_consen 79 PVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-------TSR 151 (519)
T ss_pred CCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh-------HHH
Confidence 11110 01111100 011111 111121 245699999997665321 245
Q ss_pred HHHHHHHHHHhccCCcCCC-CeEEEEEe-------CCC--------CCCChhhcCCCccceEEEcCCCCHHHHHHHHHHH
Q 011553 311 IQRTMLELLNQLDGFDSRG-DVKVILAT-------NRI--------ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIH 374 (483)
Q Consensus 311 ~~~~l~~lL~~l~~~~~~~-~v~vI~tt-------n~~--------~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~ 374 (483)
+...|.+++.. ... .++||+|- |.. ..+++.++...++. +|.|.+-...-....|...
T Consensus 152 f~~~L~~~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~-~I~FNpIa~T~mkKaL~rI 225 (519)
T PF03215_consen 152 FREALRQYLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGIT-RIKFNPIAPTFMKKALKRI 225 (519)
T ss_pred HHHHHHHHHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCce-EEEecCCCHHHHHHHHHHH
Confidence 55666666643 122 67777771 111 13566666644554 7888776665555545443
Q ss_pred HcCC--------CCCcccc-hHHHHhhccccchhhHHHHHHHHHHhhc
Q 011553 375 TSRM--------TLADDVN-LEEFVMTKDEFSGADIKTRRRIFQIHTS 413 (483)
Q Consensus 375 ~~~~--------~~~~~~~-l~~la~~t~g~~~~~i~~~~r~~~~~~~ 413 (483)
+... ....... +..++.. +.+||+.++..+|....
T Consensus 226 ~~~E~~~~~~~~~~p~~~~~l~~I~~~----s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 226 LKKEARSSSGKNKVPDKQSVLDSIAES----SNGDIRSAINNLQFWCL 269 (519)
T ss_pred HHHHhhhhcCCccCCChHHHHHHHHHh----cCchHHHHHHHHHHHhc
Confidence 3322 1111122 4444433 46899999888886554
No 227
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2.5e-08 Score=110.33 Aligned_cols=127 Identities=27% Similarity=0.385 Sum_probs=96.3
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhCC---CCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHHHh--
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGI---KPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQ-- 263 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~---~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l~~-- 263 (483)
.|+|+++++..|.++|...- .|. .+...++|.||.|+|||-||+++|..+- -.|++++++++..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr--------~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evs 634 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSR--------AGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVS 634 (898)
T ss_pred hccchHHHHHHHHHHHHhhh--------cccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhh
Confidence 47899999999999997642 122 2455599999999999999999999874 3899999987543
Q ss_pred -------hhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCC------CC
Q 011553 264 -------KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSR------GD 330 (483)
Q Consensus 264 -------~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~------~~ 330 (483)
.|+|.. ....+.+..+....+||+|||||.- +..++..|+++++.-.-.++. .+
T Consensus 635 kligsp~gyvG~e--~gg~LteavrrrP~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN 701 (898)
T KOG1051|consen 635 KLIGSPPGYVGKE--EGGQLTEAVKRRPYSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKN 701 (898)
T ss_pred hccCCCcccccch--hHHHHHHHHhcCCceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccc
Confidence 233332 2346777777777799999999887 778888899999864433322 47
Q ss_pred eEEEEEeCC
Q 011553 331 VKVILATNR 339 (483)
Q Consensus 331 v~vI~ttn~ 339 (483)
++||||+|.
T Consensus 702 ~I~IMTsn~ 710 (898)
T KOG1051|consen 702 AIFIMTSNV 710 (898)
T ss_pred eEEEEeccc
Confidence 999999986
No 228
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.83 E-value=3.4e-08 Score=95.55 Aligned_cols=121 Identities=19% Similarity=0.262 Sum_probs=75.7
Q ss_pred CceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhhhcCC---chHHHHHHHHHHhhcCCeEEEEcCCcccccc
Q 011553 226 KGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGD---GPKLVRELFRVADDLSPSIVFIDEIDAVGTK 299 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~~~g~---~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~ 299 (483)
.+++|+|+||||||+|+.+||+++ +..++.++.+++....... .......++.... ..++|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~-- 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT-- 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC--
Confidence 479999999999999999999987 5678888888877543221 1111223343322 45799999997752
Q ss_pred ccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC-----CCChhhcCCCccc----eEEEcCCCC
Q 011553 300 RYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE-----SLDPALLRPGRID----RKIEFPLPD 363 (483)
Q Consensus 300 r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~-----~ld~allr~gR~~----~~i~~~~P~ 363 (483)
........+.++++.-- ...-.+|+|||... .+...+++ |+- ..|.|.-++
T Consensus 176 -------~s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~~~~l~~~~g~ri~s--Rl~~~~~~~i~f~~~s 235 (244)
T PRK07952 176 -------ESRYEKVIINQIVDRRS----SSKRPTGMLTNSNMEEMTKLLGERVMD--RMRLGNSLWVIFNWDS 235 (244)
T ss_pred -------CCHHHHHHHHHHHHHHH----hCCCCEEEeCCCCHHHHHHHhChHHHH--HHHHCCceEEEeeCCc
Confidence 12233456777776421 12355888998632 24445555 551 355555544
No 229
>PRK08181 transposase; Validated
Probab=98.82 E-value=4.7e-08 Score=95.92 Aligned_cols=127 Identities=18% Similarity=0.279 Sum_probs=81.2
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhhhcCCc-hHHHHHHHHHHhhcCCeEEEEcCCccccccc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGDG-PKLVRELFRVADDLSPSIVFIDEIDAVGTKR 300 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~~~g~~-~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r 300 (483)
..+++|+||||||||+|+.++++++ +..++.++..++........ .......+... ..+.+|+|||++.+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~-- 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK-- 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC--
Confidence 4579999999999999999999754 56777888888776542111 11122333332 2457999999987631
Q ss_pred cCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC----------CCChhhcCCCcc---ceEEEcCCCCHHHH
Q 011553 301 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE----------SLDPALLRPGRI---DRKIEFPLPDIKTR 367 (483)
Q Consensus 301 ~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~----------~ld~allr~gR~---~~~i~~~~P~~~~r 367 (483)
+...+..|+++++.... . -.+|+|||.+- .+..++++ |+ ..+|.|...+...+
T Consensus 182 -------~~~~~~~Lf~lin~R~~---~--~s~IiTSN~~~~~w~~~~~D~~~a~aild--RL~h~~~~i~~~g~s~R~~ 247 (269)
T PRK08181 182 -------DQAETSVLFELISARYE---R--RSILITANQPFGEWNRVFPDPAMTLAAVD--RLVHHATIFEMNVESYRRR 247 (269)
T ss_pred -------CHHHHHHHHHHHHHHHh---C--CCEEEEcCCCHHHHHHhcCCccchhhHHH--hhhcCceEEecCCccchhH
Confidence 33456788888875432 1 24888888742 12244555 65 34677777776654
Q ss_pred HH
Q 011553 368 RR 369 (483)
Q Consensus 368 ~~ 369 (483)
..
T Consensus 248 ~~ 249 (269)
T PRK08181 248 TA 249 (269)
T ss_pred HH
Confidence 43
No 230
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=1.8e-08 Score=101.69 Aligned_cols=131 Identities=18% Similarity=0.270 Sum_probs=93.6
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCC-------------------------ceEEEechHHHhhhcC-----CchHH
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSA-------------------------TFLRVVGSELIQKYLG-----DGPKL 272 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~-------------------------~~~~v~~~~l~~~~~g-----~~~~~ 272 (483)
+.+.++||+||+|+|||++|+++|+.+.+ .|+.++...-. ...| -.-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 45778999999999999999999997642 23333321100 0001 12345
Q ss_pred HHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhc
Q 011553 273 VRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALL 348 (483)
Q Consensus 273 i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~all 348 (483)
++++.+.+... ...|++||+++.+ +...+..++.++++. ..++.||++|+.++.+.+.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d~~a~naLLk~LEep-----~~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESM-----------NLQAANSLLKVLEEP-----PPQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhC-----------CHHHHHHHHHHHHhC-----cCCCEEEEEeCChHhChHHHH
Confidence 67766665432 2359999999998 666778888888764 235778889999999999998
Q ss_pred CCCccceEEEcCCCCHHHHHHHHHH
Q 011553 349 RPGRIDRKIEFPLPDIKTRRRIFQI 373 (483)
Q Consensus 349 r~gR~~~~i~~~~P~~~~r~~Il~~ 373 (483)
+ |+. .+.|++|+.++....+..
T Consensus 162 S--Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 S--RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred H--Hhh-hhcCCCCCHHHHHHHHHh
Confidence 8 885 899999999888777754
No 231
>PRK12377 putative replication protein; Provisional
Probab=98.81 E-value=4.4e-08 Score=94.99 Aligned_cols=120 Identities=17% Similarity=0.225 Sum_probs=74.1
Q ss_pred ccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhhhcCCc--
Q 011553 195 GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGDG-- 269 (483)
Q Consensus 195 Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~~~g~~-- 269 (483)
|...++..+..++.... ....+++|+||||||||+||.|||+.+ +..++.++..++........
T Consensus 82 ~~~~a~~~a~~~a~~~~-----------~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~ 150 (248)
T PRK12377 82 GQRYALSQAKSIADELM-----------TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDN 150 (248)
T ss_pred hHHHHHHHHHHHHHHHH-----------hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhc
Confidence 44455666666554321 123579999999999999999999987 45677777777765332110
Q ss_pred hHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCC
Q 011553 270 PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (483)
Q Consensus 270 ~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~ 340 (483)
......++... ....+|+|||++... .+...+..|.++++.-- .....+|.|||..
T Consensus 151 ~~~~~~~l~~l--~~~dLLiIDDlg~~~---------~s~~~~~~l~~ii~~R~----~~~~ptiitSNl~ 206 (248)
T PRK12377 151 GQSGEKFLQEL--CKVDLLVLDEIGIQR---------ETKNEQVVLNQIIDRRT----ASMRSVGMLTNLN 206 (248)
T ss_pred cchHHHHHHHh--cCCCEEEEcCCCCCC---------CCHHHHHHHHHHHHHHH----hcCCCEEEEcCCC
Confidence 00111233322 345699999996652 12345677888887532 1234578889863
No 232
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.78 E-value=3.8e-09 Score=107.11 Aligned_cols=259 Identities=19% Similarity=0.166 Sum_probs=125.1
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh-----hhc
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-----KYL 266 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~-----~~~ 266 (483)
.|.|.+.+|..|.-.+........- .....+..-++||+|.||||||.|.+.+++-..... ++++..... ...
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVS 102 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEEC
T ss_pred cCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceec
Confidence 4679888776654333221111000 000123345699999999999999998876554433 333322111 000
Q ss_pred ---CCchHHH-HHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccC-Cc-------CCCCeEEE
Q 011553 267 ---GDGPKLV-RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG-FD-------SRGDVKVI 334 (483)
Q Consensus 267 ---g~~~~~i-~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~-~~-------~~~~v~vI 334 (483)
....-.+ ...+-.|. .+|++|||+|.+ ..+....|.+.+++-.- +. -..+..|+
T Consensus 103 ~d~~~~~~~leaGalvlad---~GiccIDe~dk~-----------~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svl 168 (331)
T PF00493_consen 103 RDPVTGEWVLEAGALVLAD---GGICCIDEFDKM-----------KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVL 168 (331)
T ss_dssp CCGGTSSECEEE-HHHHCT---TSEEEECTTTT-------------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEE
T ss_pred cccccceeEEeCCchhccc---Cceeeecccccc-----------cchHHHHHHHHHHcCeeccchhhhcccccchhhhH
Confidence 0000000 11233333 379999999998 33456777777764211 00 12368899
Q ss_pred EEeCCCC-------------CCChhhcCCCccceEEEc-CCCCHHHHHHHHHHHHcCCCCCcccchHHHHhh-ccccchh
Q 011553 335 LATNRIE-------------SLDPALLRPGRIDRKIEF-PLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMT-KDEFSGA 399 (483)
Q Consensus 335 ~ttn~~~-------------~ld~allr~gR~~~~i~~-~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~-t~g~~~~ 399 (483)
+++|... .++++|++ |||.++.+ ..|+.+.-..|..+.+........ ....-... ..-++..
T Consensus 169 aa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~-~~~~~~~~~~~~~~~~ 245 (331)
T PF00493_consen 169 AAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKK-SKEKKIKKNDKPISED 245 (331)
T ss_dssp EEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S---------SSS-TT-HC
T ss_pred HHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccc-cccccccccCCccCHH
Confidence 9998754 47789999 99987765 567766666666655544322210 00000000 0122333
Q ss_pred hHHHHHHHHHHhhccccccccCCHHHHH-------------hcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 011553 400 DIKTRRRIFQIHTSRMTLADDVNLEEFV-------------MTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAK 466 (483)
Q Consensus 400 ~i~~~~r~~~~~~~~~~~~~~~~l~~la-------------~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al 466 (483)
.++.+...+.....+ .+. +...+.|. ......|.+.+.+|++-|-..|-.+.+..|+.+|+..|+
T Consensus 246 ~lr~yI~yar~~~~P-~ls-~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai 323 (331)
T PF00493_consen 246 LLRKYIAYARQNIHP-VLS-EEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAI 323 (331)
T ss_dssp CCHHHHHHHHHHC---EE--HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHH
T ss_pred HHHHHHHHHHhhccc-ccC-HHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHH
Confidence 333333333211111 010 00111111 112245678889999999989988889999999999999
Q ss_pred HHHHh
Q 011553 467 EKVMF 471 (483)
Q Consensus 467 ~~~~~ 471 (483)
.-+..
T Consensus 324 ~L~~~ 328 (331)
T PF00493_consen 324 RLFEE 328 (331)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87654
No 233
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.77 E-value=8.7e-08 Score=96.73 Aligned_cols=124 Identities=22% Similarity=0.357 Sum_probs=77.1
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhhhcC---CchHHHHHHHHHHhhcCCeEEEEcCCccccc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLG---DGPKLVRELFRVADDLSPSIVFIDEIDAVGT 298 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~~~g---~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~ 298 (483)
..+++|+||+|||||+|+.|||+++ +..++.++..+++..... .........+... ....+|+|||+....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~- 259 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEK- 259 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCC-
Confidence 3679999999999999999999976 567888888887664421 1111111112222 234699999996652
Q ss_pred cccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCC-CC----CChhhcCCCccc---eEEEcCCCCHH
Q 011553 299 KRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI-ES----LDPALLRPGRID---RKIEFPLPDIK 365 (483)
Q Consensus 299 ~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~-~~----ld~allr~gR~~---~~i~~~~P~~~ 365 (483)
.+...+..|..+++..-. .+-.+|+|||.+ .. +++.+.+ |+. ..+.|...|..
T Consensus 260 --------~t~~~~~~Lf~iin~R~~----~~k~tIiTSNl~~~el~~~~~eri~S--RL~~~~~~i~~~G~d~R 320 (329)
T PRK06835 260 --------ITEFSKSELFNLINKRLL----RQKKMIISTNLSLEELLKTYSERISS--RLLGNFTLLKFYGEDIR 320 (329)
T ss_pred --------CCHHHHHHHHHHHHHHHH----CCCCEEEECCCCHHHHHHHHhHHHHH--HHHcCCEEEEecCcChh
Confidence 234556777888875321 123478888862 22 4455665 652 25566555543
No 234
>PF13173 AAA_14: AAA domain
Probab=98.76 E-value=6e-08 Score=84.54 Aligned_cols=118 Identities=26% Similarity=0.333 Sum_probs=74.4
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcC--CceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCC
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTS--ATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA 303 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~--~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~ 303 (483)
+.++|+||+|||||++++.+++.+. ..++++++.+.......... +...+.......+.+|||||++.+-
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~------ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP------ 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc------
Confidence 4589999999999999999998876 77788877765442211111 2222222222255799999998871
Q ss_pred CCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCC----ChhhcCCCccceEEEcCCCCHHH
Q 011553 304 HSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL----DPALLRPGRIDRKIEFPLPDIKT 366 (483)
Q Consensus 304 ~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~l----d~allr~gR~~~~i~~~~P~~~~ 366 (483)
++...+..+.+. ..++.||+|+.....+ ...+ .||+. .+++.+.+..|
T Consensus 75 ------~~~~~lk~l~d~------~~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 ------DWEDALKFLVDN------GPNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred ------cHHHHHHHHHHh------ccCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 244555555542 1356677776553333 2334 46875 78888888765
No 235
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.76 E-value=7.6e-08 Score=101.11 Aligned_cols=261 Identities=16% Similarity=0.146 Sum_probs=151.4
Q ss_pred cccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCc
Q 011553 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDG 269 (483)
Q Consensus 190 ~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~ 269 (483)
|..|.|.+.+|.-|.-.+---...... +...+...-+|+|+|.||||||-+.+++|+.+.+..+.- +.. +.-.|-+
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~-eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYts-Gka--SSaAGLT 419 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAG-EGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTS-GKA--SSAAGLT 419 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCC-CCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEec-Ccc--cccccce
Confidence 446788888887765544322111111 223344455699999999999999999999887654432 110 0001111
Q ss_pred hHHHHH------HHHHH--hhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc------CC--cCCCCeEE
Q 011553 270 PKLVRE------LFRVA--DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD------GF--DSRGDVKV 333 (483)
Q Consensus 270 ~~~i~~------~f~~a--~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~------~~--~~~~~v~v 333 (483)
...+++ .++.. .....+|-.|||+|++.. .-+.++.+.+++-- |+ .-+.+.-|
T Consensus 420 aaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~-----------~dqvAihEAMEQQtISIaKAGv~aTLnARtSI 488 (764)
T KOG0480|consen 420 AAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDV-----------KDQVAIHEAMEQQTISIAKAGVVATLNARTSI 488 (764)
T ss_pred EEEEecCCCCceeeecCcEEEccCceEEechhcccCh-----------HhHHHHHHHHHhheehheecceEEeecchhhh
Confidence 100000 01100 001236889999999932 22456666665421 11 01234667
Q ss_pred EEEeCCCC-------------CCChhhcCCCccceE-EEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchh
Q 011553 334 ILATNRIE-------------SLDPALLRPGRIDRK-IEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGA 399 (483)
Q Consensus 334 I~ttn~~~-------------~ld~allr~gR~~~~-i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~ 399 (483)
|+|+|... .+.+++++ |||.. |-++.|++..-+.|.++.+.....-. +-......|+..
T Consensus 489 lAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~-----~~~~~~~~~~~e 561 (764)
T KOG0480|consen 489 LAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGID-----DATERVCVYTLE 561 (764)
T ss_pred hhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhcccc-----ccccccccccHH
Confidence 88887632 36789999 99964 45578888887777776654422111 111112578888
Q ss_pred hHHHHHHHHHHhhccccccccCC----H--------HHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 011553 400 DIKTRRRIFQIHTSRMTLADDVN----L--------EEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKE 467 (483)
Q Consensus 400 ~i~~~~r~~~~~~~~~~~~~~~~----l--------~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~ 467 (483)
+++.+++.+......++...... . ......+...|-++|++|++-+-+.|-.+-+..||++|.++|++
T Consensus 562 ~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~e 641 (764)
T KOG0480|consen 562 QVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVE 641 (764)
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHH
Confidence 88887666653222221100000 0 01112233678899999999888788778899999999999998
Q ss_pred HHHhh
Q 011553 468 KVMFK 472 (483)
Q Consensus 468 ~~~~~ 472 (483)
-+...
T Consensus 642 Llk~S 646 (764)
T KOG0480|consen 642 LLKKS 646 (764)
T ss_pred HHHhh
Confidence 77654
No 236
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.74 E-value=2.1e-08 Score=105.67 Aligned_cols=150 Identities=22% Similarity=0.372 Sum_probs=89.8
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHHHhhh---
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQKY--- 265 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l~~~~--- 265 (483)
.+.|.+..++.+...+... ......++++|.+||||+++|++++.... .+|+.++|+.+....
T Consensus 140 ~lig~s~~~~~~~~~i~~~-----------~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~ 208 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALV-----------APSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLES 208 (441)
T ss_pred ceEecCHHHHHHHHHHhhc-----------cCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHH
Confidence 3556666655555444331 13345699999999999999999997654 699999998653221
Q ss_pred --cCCchHH-------HHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCC--c----CCCC
Q 011553 266 --LGDGPKL-------VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF--D----SRGD 330 (483)
Q Consensus 266 --~g~~~~~-------i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~--~----~~~~ 330 (483)
.|..... ...+|. ....++||||||+.| ....|..|+.++..-... . ...+
T Consensus 209 ~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ldei~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~ 274 (441)
T PRK10365 209 ELFGHEKGAFTGADKRREGRFV---EADGGTLFLDEIGDI-----------SPMMQVRLLRAIQEREVQRVGSNQTISVD 274 (441)
T ss_pred HhcCCCCCCcCCCCcCCCCcee---ECCCCEEEEeccccC-----------CHHHHHHHHHHHccCcEEeCCCCceeeec
Confidence 1110000 001111 223579999999999 566788888888642210 0 1136
Q ss_pred eEEEEEeCCCC-------CCChhhcCCCccceEEEcCCCCHHHHHH
Q 011553 331 VKVILATNRIE-------SLDPALLRPGRIDRKIEFPLPDIKTRRR 369 (483)
Q Consensus 331 v~vI~ttn~~~-------~ld~allr~gR~~~~i~~~~P~~~~r~~ 369 (483)
+.+|+||+..- .+.+.|.. |+. .+.+..|...+|.+
T Consensus 275 ~rii~~t~~~~~~~~~~~~~~~~l~~--~l~-~~~i~~ppLreR~~ 317 (441)
T PRK10365 275 VRLIAATHRDLAAEVNAGRFRQDLYY--RLN-VVAIEVPSLRQRRE 317 (441)
T ss_pred eEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-cceecCCChhhcch
Confidence 78999887632 12222222 332 56667777776654
No 237
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.72 E-value=1.5e-07 Score=101.98 Aligned_cols=256 Identities=20% Similarity=0.171 Sum_probs=138.7
Q ss_pred ccccccHHHHHHHHHHHhcCCCChhhhh-hhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEE-echHHHhhhcCC
Q 011553 191 ADIGGLDAQIQEIKEAVELPLTHPELYE-DIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRV-VGSELIQKYLGD 268 (483)
Q Consensus 191 ~di~Gl~~~~~~l~e~i~~pl~~~~~~~-~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v-~~~~l~~~~~g~ 268 (483)
-.|.|.+++++.|.-.+-..... ... ...+...-+|||.|.||||||.|.+.+++-+....+.- .++.- .|-
T Consensus 286 PsIyG~e~VKkAilLqLfgGv~k--~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~----~GL 359 (682)
T COG1241 286 PSIYGHEDVKKAILLQLFGGVKK--NLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA----AGL 359 (682)
T ss_pred ccccCcHHHHHHHHHHhcCCCcc--cCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc----cCc
Confidence 35788888877765444321111 000 00122335599999999999999999999876644321 12111 111
Q ss_pred chHHHHHHH-----HHHh---hcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc------CCc--CCCCeE
Q 011553 269 GPKLVRELF-----RVAD---DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD------GFD--SRGDVK 332 (483)
Q Consensus 269 ~~~~i~~~f-----~~a~---~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~------~~~--~~~~v~ 332 (483)
+...+++-+ -.|. ...++|.+|||+|++ +..-...+.+.+.+-. ++. -+.++-
T Consensus 360 TAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm-----------~~~dr~aihEaMEQQtIsIaKAGI~atLnARcs 428 (682)
T COG1241 360 TAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM-----------NEEDRVAIHEAMEQQTISIAKAGITATLNARCS 428 (682)
T ss_pred eeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC-----------ChHHHHHHHHHHHhcEeeecccceeeecchhhh
Confidence 111111111 1111 123579999999998 4444566666665421 111 123567
Q ss_pred EEEEeCCCC-------------CCChhhcCCCccceEEEcC-CCCHHHHHHHHHHHHcCCCCCcccc-------------
Q 011553 333 VILATNRIE-------------SLDPALLRPGRIDRKIEFP-LPDIKTRRRIFQIHTSRMTLADDVN------------- 385 (483)
Q Consensus 333 vI~ttn~~~-------------~ld~allr~gR~~~~i~~~-~P~~~~r~~Il~~~~~~~~~~~~~~------------- 385 (483)
|+||+|... .++++|++ |||.++.+. .|+.+.-..|..+.+..........
T Consensus 429 vLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~ 506 (682)
T COG1241 429 VLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEER 506 (682)
T ss_pred hhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccC
Confidence 888888643 37888999 999876664 5766655555544433322111110
Q ss_pred ----hH---HHHhh--ccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCC
Q 011553 386 ----LE---EFVMT--KDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMK 456 (483)
Q Consensus 386 ----l~---~la~~--t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~ 456 (483)
+. ..|.. ..-++......+...+.... .. ..... ...+--.|.+++.++++-|-+.|-.+-+..
T Consensus 507 ~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~R-k~-----~~~~~-~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~ 579 (682)
T COG1241 507 DFELLRKYISYARKNVTPVLTEEAREELEDYYVEMR-KK-----SALVE-EKRTIPITARQLESIIRLAEAHAKMRLSDV 579 (682)
T ss_pred cHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhh-hc-----ccccc-ccCcccccHHHHHHHHHHHHHHHhhhccCC
Confidence 00 00110 01111111111111111100 00 00000 112234689999999999999998889999
Q ss_pred ccHHHHHHHHHHHHhh
Q 011553 457 VTHTDFKKAKEKVMFK 472 (483)
Q Consensus 457 it~ed~~~Al~~~~~~ 472 (483)
|+.+|+.+|++-+...
T Consensus 580 V~~eD~~eAi~lv~~~ 595 (682)
T COG1241 580 VEEEDVDEAIRLVDFS 595 (682)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988744
No 238
>PRK06526 transposase; Provisional
Probab=98.65 E-value=8.4e-08 Score=93.56 Aligned_cols=101 Identities=19% Similarity=0.276 Sum_probs=63.2
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhhhcCC-chHHHHHHHHHHhhcCCeEEEEcCCcccccc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGD-GPKLVRELFRVADDLSPSIVFIDEIDAVGTK 299 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~~~g~-~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~ 299 (483)
.+.+++|+||||||||+||.+++.++ +..+..++..++....... ....+...+.. ...+.+|+|||++.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~~- 173 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIPF- 173 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCCC-
Confidence 35679999999999999999998865 4555556666665533211 01111222222 23457999999987631
Q ss_pred ccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCC
Q 011553 300 RYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (483)
Q Consensus 300 r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~ 340 (483)
+...+..+.++++.... . ..+|+|||.+
T Consensus 174 --------~~~~~~~L~~li~~r~~---~--~s~IitSn~~ 201 (254)
T PRK06526 174 --------EPEAANLFFQLVSSRYE---R--ASLIVTSNKP 201 (254)
T ss_pred --------CHHHHHHHHHHHHHHHh---c--CCEEEEcCCC
Confidence 33455677788764322 1 2378888874
No 239
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.62 E-value=2.3e-07 Score=98.25 Aligned_cols=253 Identities=18% Similarity=0.224 Sum_probs=128.4
Q ss_pred ccccHHHHHHHHHHHhcCCCChhhhhhhC-CCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEE-echHHHh--hhcCC
Q 011553 193 IGGLDAQIQEIKEAVELPLTHPELYEDIG-IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRV-VGSELIQ--KYLGD 268 (483)
Q Consensus 193 i~Gl~~~~~~l~e~i~~pl~~~~~~~~~g-~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v-~~~~l~~--~~~g~ 268 (483)
|.|++++|+-|.-.+-- +...-++..| ....-+|||+|.||||||-+.+.+++-+..-.+.- .++.-.+ .|+-.
T Consensus 431 Iye~edvKkglLLqLfG--Gt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtr 508 (804)
T KOG0478|consen 431 IYELEDVKKGLLLQLFG--GTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTK 508 (804)
T ss_pred hhcccchhhhHHHHHhc--CCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEe
Confidence 56666666665433321 1111111111 23345699999999999999999999776543321 1111100 01100
Q ss_pred chHHHHHHHHHHh---hcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc------CCc--CCCCeEEEEEe
Q 011553 269 GPKLVRELFRVAD---DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD------GFD--SRGDVKVILAT 337 (483)
Q Consensus 269 ~~~~i~~~f~~a~---~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~------~~~--~~~~v~vI~tt 337 (483)
.+. -+++.-... ....+|-+|||+|+| +...+..|.+++++-. |+. -+.+.-||+++
T Consensus 509 d~d-tkqlVLesGALVLSD~GiCCIDEFDKM-----------~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaA 576 (804)
T KOG0478|consen 509 DPD-TRQLVLESGALVLSDNGICCIDEFDKM-----------SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAA 576 (804)
T ss_pred cCc-cceeeeecCcEEEcCCceEEchhhhhh-----------hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeee
Confidence 000 011111100 012358889999999 3345677788876421 111 13457789999
Q ss_pred CCCC-------------CCChhhcCCCccceEEE-cCCCCHHHHHHHHHHH----HcCCCCCcccchH-HHHhhccccch
Q 011553 338 NRIE-------------SLDPALLRPGRIDRKIE-FPLPDIKTRRRIFQIH----TSRMTLADDVNLE-EFVMTKDEFSG 398 (483)
Q Consensus 338 n~~~-------------~ld~allr~gR~~~~i~-~~~P~~~~r~~Il~~~----~~~~~~~~~~~l~-~la~~t~g~~~ 398 (483)
|... .|+|.|++ ||+.++- ++.||...-+.|..+. ........++.+. .+...-..|..
T Consensus 577 NP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yAr 654 (804)
T KOG0478|consen 577 NPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYAR 654 (804)
T ss_pred ccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHh
Confidence 8421 37899999 9997654 4677776444444433 3222111111000 00000000100
Q ss_pred hhH-----HHH-HHHHHHhhccccccccCCHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 011553 399 ADI-----KTR-RRIFQIHTSRMTLADDVNLEEFVMT--KDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 399 ~~i-----~~~-~r~~~~~~~~~~~~~~~~l~~la~~--~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~ 470 (483)
..+ ..+ ..+.+. .++...+... ..-.+.+++.+|.+.+-+.|-.+....+...|+++|+.-.-
T Consensus 655 k~i~p~l~~ea~~~l~~a---------yvd~rk~~~~~~~itat~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l~R 725 (804)
T KOG0478|consen 655 KNIHPALSPEASQALIQA---------YVDMRKIGEGAGQITATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRLLR 725 (804)
T ss_pred ccCCccccHHHHHHHHHH---------hhhhhhhcccccccchhHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHH
Confidence 000 000 000000 1122211111 11235789999999888888888889999999999986543
No 240
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.59 E-value=3.8e-07 Score=89.01 Aligned_cols=118 Identities=21% Similarity=0.303 Sum_probs=70.8
Q ss_pred ccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhhhcCCchH
Q 011553 195 GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGDGPK 271 (483)
Q Consensus 195 Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~~~g~~~~ 271 (483)
+...+...+..++.. +..+.+++|+||||||||+||-||++++ |..++.++.++++......-..
T Consensus 87 ~~~~~l~~~~~~~~~------------~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 87 IDKKALEDLASLVEF------------FERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred hhHHHHHHHHHHHHH------------hccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhc
Confidence 344556666666543 1256789999999999999999999976 5677888888887643221110
Q ss_pred -HHH-HHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCC
Q 011553 272 -LVR-ELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (483)
Q Consensus 272 -~i~-~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~ 340 (483)
... .+.... ....+|+|||+...- .+......+++++...-. + ... |+|||.+
T Consensus 155 ~~~~~~l~~~l--~~~dlLIiDDlG~~~---------~~~~~~~~~~q~I~~r~~---~-~~~-~~tsN~~ 209 (254)
T COG1484 155 GRLEEKLLREL--KKVDLLIIDDIGYEP---------FSQEEADLLFQLISRRYE---S-RSL-IITSNLS 209 (254)
T ss_pred CchHHHHHHHh--hcCCEEEEecccCcc---------CCHHHHHHHHHHHHHHHh---h-ccc-eeecCCC
Confidence 111 111111 223699999996641 122334555555543221 1 222 8898864
No 241
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.59 E-value=9.3e-08 Score=88.31 Aligned_cols=100 Identities=25% Similarity=0.372 Sum_probs=62.1
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhhhcCCc-hHHHHHHHHHHhhcCCeEEEEcCCcccccc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGDG-PKLVRELFRVADDLSPSIVFIDEIDAVGTK 299 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~~~g~~-~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~ 299 (483)
...+++|+||||||||+||-++++++ +.....++.++++....... .......+.... .+.+|+|||+....
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~-- 121 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEP-- 121 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS---
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceee--
Confidence 45789999999999999999999864 66788888888877543221 111223333332 34699999995431
Q ss_pred ccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC
Q 011553 300 RYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (483)
Q Consensus 300 r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~ 339 (483)
.+......+.++++.-.+ + -..|+|||.
T Consensus 122 -------~~~~~~~~l~~ii~~R~~---~--~~tIiTSN~ 149 (178)
T PF01695_consen 122 -------LSEWEAELLFEIIDERYE---R--KPTIITSNL 149 (178)
T ss_dssp ---------HHHHHCTHHHHHHHHH---T---EEEEEESS
T ss_pred -------ecccccccchhhhhHhhc---c--cCeEeeCCC
Confidence 133455667777775321 1 247779986
No 242
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=3.9e-07 Score=89.90 Aligned_cols=121 Identities=20% Similarity=0.205 Sum_probs=83.0
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhh--------h-cC----CchHHHHHHHHHHhhc----CC
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK--------Y-LG----DGPKLVRELFRVADDL----SP 285 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~--------~-~g----~~~~~i~~~f~~a~~~----~p 285 (483)
..+.++||+||+|+||+.+|.++|..+-+.--.-.|..+... + .+ -.-..++++...+... ..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 557789999999999999999999976442100011111000 0 01 1233455555444332 23
Q ss_pred eEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCC
Q 011553 286 SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLP 362 (483)
Q Consensus 286 ~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P 362 (483)
.|++||++|.+ +.+.+..|+..|++ +..++++|+.|+.++.+.|.+++ |+. .+.|+++
T Consensus 97 kv~ii~~ad~m-----------t~~AaNaLLK~LEE-----Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRM-----------TLDAISAFLKVLED-----PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred eEEEEechhhc-----------CHHHHHHHHHHhhc-----CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 59999999999 66677788887774 56789999999999999999999 985 7778754
No 243
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.58 E-value=3.4e-07 Score=87.15 Aligned_cols=161 Identities=19% Similarity=0.309 Sum_probs=86.9
Q ss_pred cccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc---eEEEec-----h----HH
Q 011553 194 GGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT---FLRVVG-----S----EL 261 (483)
Q Consensus 194 ~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~---~~~v~~-----~----~l 261 (483)
+|.+..++.|.+.+.. .....++|+||+|+|||+|++.+.+..... .+.+.. . .+
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 5778888888887654 234569999999999999999999988321 111111 0 01
Q ss_pred -------------Hhhhc-------------CCchHHHHHHHHHHhhcC-CeEEEEcCCccccccccCCCCCChHHHHHH
Q 011553 262 -------------IQKYL-------------GDGPKLVRELFRVADDLS-PSIVFIDEIDAVGTKRYDAHSGGEREIQRT 314 (483)
Q Consensus 262 -------------~~~~~-------------g~~~~~i~~~f~~a~~~~-p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~ 314 (483)
..... ......+..++....... ..||+|||++.+. .. ..........
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~-~~----~~~~~~~~~~ 143 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLA-IA----SEEDKDFLKS 143 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGG-BC----TTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHh-hc----ccchHHHHHH
Confidence 00000 112344556666655432 3799999999996 11 1123444555
Q ss_pred HHHHHHhccCCcCCCCeEEEEEeCCC------CCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCC
Q 011553 315 MLELLNQLDGFDSRGDVKVILATNRI------ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM 378 (483)
Q Consensus 315 l~~lL~~l~~~~~~~~v~vI~ttn~~------~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~ 378 (483)
+..++.. .....++.+|+++... ..-...+.. |+.. +.+++.+.++..+++...+...
T Consensus 144 l~~~~~~---~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~ 207 (234)
T PF01637_consen 144 LRSLLDS---LLSQQNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKEL 207 (234)
T ss_dssp HHHHHHH-------TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC
T ss_pred HHHHHhh---ccccCCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHh
Confidence 5555554 2224456555555431 112233444 8875 9999999999999999877665
No 244
>PRK09183 transposase/IS protein; Provisional
Probab=98.58 E-value=2.6e-07 Score=90.51 Aligned_cols=101 Identities=20% Similarity=0.316 Sum_probs=64.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhhhcCC-chHHHHHHHHHHhhcCCeEEEEcCCccccccc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGD-GPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 300 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~~~g~-~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r 300 (483)
..+++|+||||||||+|+.+++... +..+..+++.++...+... ....+...+... ...+.+++|||++.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~-- 178 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF-- 178 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC--
Confidence 4569999999999999999998653 5566777777776443211 111233344433 23567999999976521
Q ss_pred cCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCC
Q 011553 301 YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (483)
Q Consensus 301 ~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~ 340 (483)
+.+....|+++++.... .. .+|+|||.+
T Consensus 179 -------~~~~~~~lf~li~~r~~---~~--s~iiTsn~~ 206 (259)
T PRK09183 179 -------SQEEANLFFQVIAKRYE---KG--SMILTSNLP 206 (259)
T ss_pred -------ChHHHHHHHHHHHHHHh---cC--cEEEecCCC
Confidence 23445677788765322 12 368888863
No 245
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.57 E-value=1e-07 Score=100.87 Aligned_cols=128 Identities=28% Similarity=0.432 Sum_probs=86.2
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcC--CceEEEechHHHhhh-----cCCchHH--------HHHHHHHHhhcCCeEEE
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTS--ATFLRVVGSELIQKY-----LGDGPKL--------VRELFRVADDLSPSIVF 289 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~--~~~~~v~~~~l~~~~-----~g~~~~~--------i~~~f~~a~~~~p~Il~ 289 (483)
.-.+|+.|.+||||-.++++|+...+ .+|+-++|..+.... +|..+.. ....+..|. .+.+|
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~---gGtlF 412 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQAD---GGTLF 412 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecC---CCccH
Confidence 44599999999999999999998765 499999997654422 2222211 122222222 36999
Q ss_pred EcCCccccccccCCCCCChHHHHHHHHHHHHhcc-----CCcCCCCeEEEEEeCCCCCCChhhcCCCccce-------EE
Q 011553 290 IDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD-----GFDSRGDVKVILATNRIESLDPALLRPGRIDR-------KI 357 (483)
Q Consensus 290 iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~-----~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~-------~i 357 (483)
+|||..| ...+|..|+++|++-. +....-+|.||+||++.= ..|.+.|||-. .+
T Consensus 413 ldeIgd~-----------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~ 478 (606)
T COG3284 413 LDEIGDM-----------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAF 478 (606)
T ss_pred HHHhhhc-----------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCe
Confidence 9999888 6789999999998632 222223699999998732 23444555532 55
Q ss_pred EcCCCCHHHHHH
Q 011553 358 EFPLPDIKTRRR 369 (483)
Q Consensus 358 ~~~~P~~~~r~~ 369 (483)
.|..|...+|.+
T Consensus 479 ~i~lP~lr~R~d 490 (606)
T COG3284 479 VITLPPLRERSD 490 (606)
T ss_pred eeccCchhcccc
Confidence 666777777664
No 246
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.55 E-value=3.7e-07 Score=91.44 Aligned_cols=102 Identities=21% Similarity=0.281 Sum_probs=61.8
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhhhcCCc-hHHHHHHHHHHhhcCCeEEEEcCCcccccc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGDG-PKLVRELFRVADDLSPSIVFIDEIDAVGTK 299 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~~~g~~-~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~ 299 (483)
..+|++|+||+|||||+|+.|+|+++ +.....+..++++....... ...+...+.... ...+|+|||+..-..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~~- 231 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQM- 231 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCccc-
Confidence 45789999999999999999999987 56777777777655432110 011223333322 346999999965411
Q ss_pred ccCCCCCChHHHH-HHHHHHHHhccCCcCCCCeEEEEEeCCC
Q 011553 300 RYDAHSGGEREIQ-RTMLELLNQLDGFDSRGDVKVILATNRI 340 (483)
Q Consensus 300 r~~~~~~~~~~~~-~~l~~lL~~l~~~~~~~~v~vI~ttn~~ 340 (483)
+.... ..+..+++.- -......|+|||.+
T Consensus 232 --------s~~~~~~ll~~Il~~R----~~~~~~ti~TSNl~ 261 (306)
T PRK08939 232 --------SSWVRDEVLGVILQYR----MQEELPTFFTSNFD 261 (306)
T ss_pred --------cHHHHHHHHHHHHHHH----HHCCCeEEEECCCC
Confidence 22222 2333444421 01245689999863
No 247
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.53 E-value=1.5e-05 Score=76.52 Aligned_cols=125 Identities=18% Similarity=0.247 Sum_probs=77.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCC
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAH 304 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~ 304 (483)
..+..++||+|||||..++.+|..+|.+++.++|++-.+ ...+..+|.-+... .+-+++||++.|
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl-------- 96 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL-------- 96 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS--------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh--------
Confidence 456789999999999999999999999999999987433 34566677655543 368999999998
Q ss_pred CCChHHHHHHHHHHHHhcc----C-----------CcCCCCeEEEEEeCC----CCCCChhhcCCCccceEEEcCCCCHH
Q 011553 305 SGGEREIQRTMLELLNQLD----G-----------FDSRGDVKVILATNR----IESLDPALLRPGRIDRKIEFPLPDIK 365 (483)
Q Consensus 305 ~~~~~~~~~~l~~lL~~l~----~-----------~~~~~~v~vI~ttn~----~~~ld~allr~gR~~~~i~~~~P~~~ 365 (483)
+.+....+.+.+..+. . +.-+.++-+.+|.|. ...+|+.|+. .| |.+.+..||..
T Consensus 97 ---~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~ 170 (231)
T PF12774_consen 97 ---SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLS 170 (231)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HH
T ss_pred ---hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHH
Confidence 5555555555444321 0 111224556667663 3568888876 55 78999999876
Q ss_pred HHHHH
Q 011553 366 TRRRI 370 (483)
Q Consensus 366 ~r~~I 370 (483)
...++
T Consensus 171 ~I~ei 175 (231)
T PF12774_consen 171 LIAEI 175 (231)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 248
>PRK06921 hypothetical protein; Provisional
Probab=98.53 E-value=6.2e-07 Score=88.17 Aligned_cols=103 Identities=22% Similarity=0.247 Sum_probs=60.9
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc----CCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCcc-cccc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST----SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDA-VGTK 299 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l----~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~-l~~~ 299 (483)
..+++|+||||||||+|+.|||+++ +..+++++..+++....... ......+... ....+|+|||++. +.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~~~~g~ 193 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFKPVNGK 193 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEeccccccCCC
Confidence 5679999999999999999999976 45667777766654321110 1111222222 2356999999944 2111
Q ss_pred ccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC
Q 011553 300 RYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (483)
Q Consensus 300 r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~ 339 (483)
..........|..+++..-. .+-.+|+|||.
T Consensus 194 -----e~~t~~~~~~lf~iin~R~~----~~k~tIitsn~ 224 (266)
T PRK06921 194 -----PRATEWQIEQMYSVLNYRYL----NHKPILISSEL 224 (266)
T ss_pred -----ccCCHHHHHHHHHHHHHHHH----CCCCEEEECCC
Confidence 11122334567777765321 12236778876
No 249
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.50 E-value=5.7e-07 Score=78.09 Aligned_cols=72 Identities=24% Similarity=0.302 Sum_probs=46.7
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc--------CCceEEEechHHHh----------hh----cC--CchHHHHHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST--------SATFLRVVGSELIQ----------KY----LG--DGPKLVRELFRVA 280 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l--------~~~~~~v~~~~l~~----------~~----~g--~~~~~i~~~f~~a 280 (483)
.+.++++||||+|||++++.++... ..+++.+++..... .+ .. ........+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4569999999999999999999987 67788887654331 11 11 1223334444444
Q ss_pred hhcCCeEEEEcCCccc
Q 011553 281 DDLSPSIVFIDEIDAV 296 (483)
Q Consensus 281 ~~~~p~Il~iDEiD~l 296 (483)
......+|+|||+|.+
T Consensus 84 ~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHCTEEEEEEETTHHH
T ss_pred HhcCCeEEEEeChHhc
Confidence 4444469999999998
No 250
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.45 E-value=1.3e-06 Score=89.81 Aligned_cols=254 Identities=17% Similarity=0.165 Sum_probs=144.4
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchH
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPK 271 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~ 271 (483)
+|+|.+++++.|.-.+.-.... ..-..+.+...-+|+|.|.||+.||-|.+.|.+-..+..+...-. +..+|-+..
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~-~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrG---SSGVGLTAA 418 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDK-SPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRG---SSGVGLTAA 418 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCC-CCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCC---CCccccchh
Confidence 5899999999987766542211 111222344455699999999999999999998765544332100 011222221
Q ss_pred HHHH-----------HHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhc------cCCc--CCCCeE
Q 011553 272 LVRE-----------LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQL------DGFD--SRGDVK 332 (483)
Q Consensus 272 ~i~~-----------~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l------~~~~--~~~~v~ 332 (483)
.+++ .+-.| ..+|-+|||+|++... ++ .++-+++++- .|+. -+.++.
T Consensus 419 VmkDpvTgEM~LEGGALVLA---D~GICCIDEfDKM~e~--------DR---tAIHEVMEQQTISIaKAGI~TtLNAR~s 484 (721)
T KOG0482|consen 419 VMKDPVTGEMVLEGGALVLA---DGGICCIDEFDKMDES--------DR---TAIHEVMEQQTISIAKAGINTTLNARTS 484 (721)
T ss_pred hhcCCCCCeeEeccceEEEc---cCceEeehhhhhhhhh--------hh---HHHHHHHHhhhhhhhhhccccchhhhHH
Confidence 1111 11111 2368889999999421 21 2233333321 1111 134577
Q ss_pred EEEEeCCC-------------CCCChhhcCCCccceEEEc-CCCCHHHHHHHHHHHH--cCCCCCcccch----------
Q 011553 333 VILATNRI-------------ESLDPALLRPGRIDRKIEF-PLPDIKTRRRIFQIHT--SRMTLADDVNL---------- 386 (483)
Q Consensus 333 vI~ttn~~-------------~~ld~allr~gR~~~~i~~-~~P~~~~r~~Il~~~~--~~~~~~~~~~l---------- 386 (483)
|++++|.. -.||.||++ ||+..+-+ ..||.+.-..+.++.+ ....-.++.++
T Consensus 485 ILaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~ 562 (721)
T KOG0482|consen 485 ILAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRR 562 (721)
T ss_pred hhhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHH
Confidence 88888752 148899999 99975544 5788777666666432 22222222111
Q ss_pred -HHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHH
Q 011553 387 -EEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKD-EFSGADIKAICTEAGLLALRERRMKVTHTDFKK 464 (483)
Q Consensus 387 -~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~-g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~ 464 (483)
-.+++.-.-..+.++...+-.+....++-.+ ..... ..|++-|-.|++-+..+|-.+-...|..+|+.+
T Consensus 563 yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~---------~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~E 633 (721)
T KOG0482|consen 563 YISLAKRKNPVVPEALADYITGAYVELRREAR---------SSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNE 633 (721)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhh---------ccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 1223333334444444433332222222111 11111 236899999999999888888899999999999
Q ss_pred HHHHHHhhcc
Q 011553 465 AKEKVMFKKK 474 (483)
Q Consensus 465 Al~~~~~~~~ 474 (483)
|++-+...+.
T Consensus 634 ALRLme~sK~ 643 (721)
T KOG0482|consen 634 ALRLMEMSKD 643 (721)
T ss_pred HHHHHHhhhc
Confidence 9999876553
No 251
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.44 E-value=5.6e-06 Score=97.41 Aligned_cols=160 Identities=22% Similarity=0.344 Sum_probs=93.4
Q ss_pred CCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCce---EEEechHH
Q 011553 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATF---LRVVGSEL 261 (483)
Q Consensus 185 ~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~---~~v~~~~l 261 (483)
.+...+.+++|+++.+++|...+... ....+-+.|+|++|+||||||+++++.+...| +.++...+
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~l~-----------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v 246 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLHLE-----------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFI 246 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHccc-----------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccc
Confidence 34557788999999999999887541 23345589999999999999999998775433 11111000
Q ss_pred ---HhhhcC----C---c----hHHHHH-------------HHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHH
Q 011553 262 ---IQKYLG----D---G----PKLVRE-------------LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRT 314 (483)
Q Consensus 262 ---~~~~~g----~---~----~~~i~~-------------~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~ 314 (483)
...+.. . . ...+.. .+...-...+.+|+||+++.. ..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~----------------~~ 310 (1153)
T PLN03210 247 SKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ----------------DV 310 (1153)
T ss_pred ccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH----------------HH
Confidence 000000 0 0 000111 111112235679999998643 11
Q ss_pred HHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCC
Q 011553 315 MLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM 378 (483)
Q Consensus 315 l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~ 378 (483)
+..+....+.+ ..+..||+||+..+ +++...++++++++.|+.++..++|..+..+.
T Consensus 311 l~~L~~~~~~~--~~GsrIIiTTrd~~-----vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~ 367 (1153)
T PLN03210 311 LDALAGQTQWF--GSGSRIIVITKDKH-----FLRAHGIDHIYEVCLPSNELALEMFCRSAFKK 367 (1153)
T ss_pred HHHHHhhCccC--CCCcEEEEEeCcHH-----HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCC
Confidence 22222222222 23456788887543 22222456789999999999999999876543
No 252
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.37 E-value=2.7e-06 Score=76.05 Aligned_cols=110 Identities=23% Similarity=0.359 Sum_probs=62.7
Q ss_pred eEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhhh----------------------cCC--chHHHHHHHHHH
Q 011553 228 VILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKY----------------------LGD--GPKLVRELFRVA 280 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~~----------------------~g~--~~~~i~~~f~~a 280 (483)
++|+||||+|||+++..++... +.+.+.++........ ... ........+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 3455555443222100 000 011112234455
Q ss_pred hhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 281 DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 281 ~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
....|.+|+|||+..+.........+......+.+..++.... ..++.+|++++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 5667889999999987543210001122333455555554432 24677888876544
No 253
>PF05729 NACHT: NACHT domain
Probab=98.36 E-value=5.3e-06 Score=74.59 Aligned_cols=139 Identities=17% Similarity=0.220 Sum_probs=76.6
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCC---------ceEEEechHHHhh------------hcCCchHHHHH-HHHHHhhcCC
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSA---------TFLRVVGSELIQK------------YLGDGPKLVRE-LFRVADDLSP 285 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~---------~~~~v~~~~l~~~------------~~g~~~~~i~~-~f~~a~~~~p 285 (483)
++|+|+||+|||++++.++..+.. .++.+.+...... ........+.. +.........
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 789999999999999999976521 1223333322211 11111111121 1222334456
Q ss_pred eEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCC--CChhhcCCCccceEEEcCCCC
Q 011553 286 SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES--LDPALLRPGRIDRKIEFPLPD 363 (483)
Q Consensus 286 ~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~--ld~allr~gR~~~~i~~~~P~ 363 (483)
.+|+||.+|.+...... .........+..++.. ....++.+|.|++.... +...+.. . ..+.++..+
T Consensus 83 ~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~----~~~~~~~liit~r~~~~~~~~~~~~~---~-~~~~l~~~~ 151 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ----ALPPGVKLIITSRPRAFPDLRRRLKQ---A-QILELEPFS 151 (166)
T ss_pred eEEEEechHhcccchhh---hHHHHHHHHHHHHhhh----ccCCCCeEEEEEcCChHHHHHHhcCC---C-cEEEECCCC
Confidence 79999999999532210 0111233344445542 11345667777653222 2222221 1 478999999
Q ss_pred HHHHHHHHHHHHcC
Q 011553 364 IKTRRRIFQIHTSR 377 (483)
Q Consensus 364 ~~~r~~Il~~~~~~ 377 (483)
.++..++++.+++.
T Consensus 152 ~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 152 EEDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988754
No 254
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.32 E-value=8.3e-07 Score=87.52 Aligned_cols=138 Identities=21% Similarity=0.366 Sum_probs=77.9
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCC-c--eEEEechHHHhhhcCCchHHHHHHHHHH-----------hhcCCeEEEE
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSA-T--FLRVVGSELIQKYLGDGPKLVRELFRVA-----------DDLSPSIVFI 290 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~-~--~~~v~~~~l~~~~~g~~~~~i~~~f~~a-----------~~~~p~Il~i 290 (483)
.+.+||+||+|||||++++.+-..+.. . ...++++.... ...+..+++.. ......|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 567999999999999999988776653 2 22333332111 11122111111 0112359999
Q ss_pred cCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCC--------CCeEEEEEeCCCC---CCChhhcCCCccceEEEc
Q 011553 291 DEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSR--------GDVKVILATNRIE---SLDPALLRPGRIDRKIEF 359 (483)
Q Consensus 291 DEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~--------~~v~vI~ttn~~~---~ld~allr~gR~~~~i~~ 359 (483)
||+..-.... -+...+.+.|-++++. .++... .++.+|+|++... .+++.++| .|. ++.+
T Consensus 107 DDlN~p~~d~-----ygtq~~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~~~ 177 (272)
T PF12775_consen 107 DDLNMPQPDK-----YGTQPPIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-ILNI 177 (272)
T ss_dssp ETTT-S---T-----TS--HHHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-EEE-
T ss_pred cccCCCCCCC-----CCCcCHHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-EEEe
Confidence 9996543222 2233344555566653 222222 3688999987532 46788887 774 9999
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 011553 360 PLPDIKTRRRIFQIHTSR 377 (483)
Q Consensus 360 ~~P~~~~r~~Il~~~~~~ 377 (483)
+.|+.++...|+...+..
T Consensus 178 ~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 178 PYPSDESLNTIFSSILQS 195 (272)
T ss_dssp ---TCCHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHhh
Confidence 999999999988866543
No 255
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=1.6e-05 Score=79.34 Aligned_cols=127 Identities=13% Similarity=0.099 Sum_probs=87.8
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCC-------------ceEEEechHHHhhhcCCchHHHHHHHHHHhh-----cC
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSA-------------TFLRVVGSELIQKYLGDGPKLVRELFRVADD-----LS 284 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~-------------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~-----~~ 284 (483)
..++..||+|+.|+||+.+++++++.+.+ .+..++... . .-....++.+.+.... ..
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g---~--~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD---K--DLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC---C--cCCHHHHHHHHHHhccCCcccCC
Confidence 34566899999999999999999998722 122222000 0 0112345555444422 23
Q ss_pred CeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCH
Q 011553 285 PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDI 364 (483)
Q Consensus 285 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~ 364 (483)
..|++||++|.+ +...+..|+..|++ +...+++|++|+.++.+-+.+++ |+. +++|.+|+.
T Consensus 91 ~KvvII~~~e~m-----------~~~a~NaLLK~LEE-----Pp~~t~~il~~~~~~kll~TI~S--Rc~-~~~f~~l~~ 151 (299)
T PRK07132 91 KKILIIKNIEKT-----------SNSLLNALLKTIEE-----PPKDTYFLLTTKNINKVLPTIVS--RCQ-VFNVKEPDQ 151 (299)
T ss_pred ceEEEEeccccc-----------CHHHHHHHHHHhhC-----CCCCeEEEEEeCChHhChHHHHh--CeE-EEECCCCCH
Confidence 469999999988 44455666666654 45678888888888999999988 885 899999998
Q ss_pred HHHHHHHHH
Q 011553 365 KTRRRIFQI 373 (483)
Q Consensus 365 ~~r~~Il~~ 373 (483)
++....+..
T Consensus 152 ~~l~~~l~~ 160 (299)
T PRK07132 152 QKILAKLLS 160 (299)
T ss_pred HHHHHHHHH
Confidence 888776654
No 256
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=5.3e-06 Score=82.09 Aligned_cols=144 Identities=15% Similarity=0.210 Sum_probs=93.9
Q ss_pred ccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceE--------EEechHHHh-h-
Q 011553 195 GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFL--------RVVGSELIQ-K- 264 (483)
Q Consensus 195 Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~--------~v~~~~l~~-~- 264 (483)
.+..+++.+...+.. -..+.++||+|| +||+++|+++|..+-+.-- .-+|..+.. .
T Consensus 6 ~q~~~~~~L~~~~~~------------~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~H 71 (290)
T PRK07276 6 KQPKVFQRFQTILEQ------------DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEF 71 (290)
T ss_pred HHHHHHHHHHHHHHc------------CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 456677777777765 255778999996 6899999999987643110 001111110 0
Q ss_pred ----hc---CC--chHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCe
Q 011553 265 ----YL---GD--GPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDV 331 (483)
Q Consensus 265 ----~~---g~--~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v 331 (483)
++ |. .-..++++...+.. ....|++||++|.| +....+.|+..|++ +..++
T Consensus 72 PD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m-----------~~~AaNaLLKtLEE-----Pp~~t 135 (290)
T PRK07276 72 SDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM-----------HVNAANSLLKVIEE-----PQSEI 135 (290)
T ss_pred CCeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc-----------CHHHHHHHHHHhcC-----CCCCe
Confidence 00 11 12455665554433 22359999999999 45556666666653 45679
Q ss_pred EEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHH
Q 011553 332 KVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ 372 (483)
Q Consensus 332 ~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~ 372 (483)
++|++|+.++.+.|.+++ |+. .+.|+. +.+...+++.
T Consensus 136 ~~iL~t~~~~~lLpTI~S--Rcq-~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 136 YIFLLTNDENKVLPTIKS--RTQ-IFHFPK-NEAYLIQLLE 172 (290)
T ss_pred EEEEEECChhhCchHHHH--cce-eeeCCC-cHHHHHHHHH
Confidence 999999999999999999 995 888876 5555555554
No 257
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=3.8e-06 Score=81.33 Aligned_cols=121 Identities=11% Similarity=0.079 Sum_probs=80.2
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEec------hHHHh------h--hcC---CchHHHHHHHHHHhh---
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG------SELIQ------K--YLG---DGPKLVRELFRVADD--- 282 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~------~~l~~------~--~~g---~~~~~i~~~f~~a~~--- 282 (483)
..+.++||+||+|+||..+|.++|..+-+.--.-.| ..+.. . +.. -....++++......
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 457789999999999999999999876331000001 11110 0 000 112334444443321
Q ss_pred --cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcC
Q 011553 283 --LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP 360 (483)
Q Consensus 283 --~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~ 360 (483)
....|++|+++|.+ +.+....|+.+|++ +..++++|++|+.++.+.|.+++ |+. .+.|+
T Consensus 85 e~~~~KV~II~~ae~m-----------~~~AaNaLLK~LEE-----Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL-----------NKQSANSLLKLIEE-----PPKNTYGIFTTRNENNILNTILS--RCV-QYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhh-----------CHHHHHHHHHhhcC-----CCCCeEEEEEECChHhCchHhhh--hee-eeecC
Confidence 12469999999999 55566666666653 56789999999999999999999 985 67777
Q ss_pred CC
Q 011553 361 LP 362 (483)
Q Consensus 361 ~P 362 (483)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 66
No 258
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.24 E-value=1.1e-05 Score=83.35 Aligned_cols=266 Identities=18% Similarity=0.213 Sum_probs=130.8
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchH
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPK 271 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~ 271 (483)
.|+|.+++++.|.-.+-.- ....+-..+.....-+|||.|.|||.||-|.+.+-.-....++.- +-. +...|-+..
T Consensus 332 SIfG~~DiKkAiaClLFgG-srK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTS-GKG--SSAAGLTAS 407 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGG-SRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTS-GKG--SSAAGLTAS 407 (729)
T ss_pred hhcCchhHHHHHHHHhhcC-ccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEec-CCC--cccccceee
Confidence 4788888888875544211 000111111223334599999999999999999876554433321 100 000111111
Q ss_pred HHH-----HHHHHHh---hcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhc--cCCc--CCCCeEEEEEeCC
Q 011553 272 LVR-----ELFRVAD---DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQL--DGFD--SRGDVKVILATNR 339 (483)
Q Consensus 272 ~i~-----~~f~~a~---~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l--~~~~--~~~~v~vI~ttn~ 339 (483)
.++ ..+-... ....+|++|||+|++-. ...-....++-+---.+ .|+. -+.+.-|++++|.
T Consensus 408 V~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre-------~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANp 480 (729)
T KOG0481|consen 408 VIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRE-------DDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANP 480 (729)
T ss_pred EEecCCcceEEEecceEEEecCCEEEeehhhccCc-------hhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCC
Confidence 111 0000000 01236999999999921 11111222221111001 1111 1346678888886
Q ss_pred C-----------CCCC--hhhcCCCccceEEEcCCCCHHHHHH-----HHHHHHcCCCCCccc--------chHHH----
Q 011553 340 I-----------ESLD--PALLRPGRIDRKIEFPLPDIKTRRR-----IFQIHTSRMTLADDV--------NLEEF---- 389 (483)
Q Consensus 340 ~-----------~~ld--~allr~gR~~~~i~~~~P~~~~r~~-----Il~~~~~~~~~~~~~--------~l~~l---- 389 (483)
+ +++| +.+++ |||.++-+..-..+++-. ++..|.+..+...+. .+..+
T Consensus 481 vfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI 558 (729)
T KOG0481|consen 481 VFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYI 558 (729)
T ss_pred ccccccccCCcccccchhhhHhh--hccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHH
Confidence 3 3344 78999 999888776544443333 344455432221111 01100
Q ss_pred ----HhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHH
Q 011553 390 ----VMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKA 465 (483)
Q Consensus 390 ----a~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~A 465 (483)
++..+.++...-+++.+.+........-. ..+..-..+--.+-++++++++-+-.+|-.+-....|.+|+++|
T Consensus 559 ~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~---e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA 635 (729)
T KOG0481|consen 559 QYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQH---EQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEA 635 (729)
T ss_pred HHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHh---hhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHH
Confidence 11223333333333322222111110000 00000111223567999999999988998888999999999999
Q ss_pred HHHHHhhc
Q 011553 466 KEKVMFKK 473 (483)
Q Consensus 466 l~~~~~~~ 473 (483)
++-.....
T Consensus 636 ~RLF~vST 643 (729)
T KOG0481|consen 636 LRLFQVST 643 (729)
T ss_pred HHHHhHhh
Confidence 98766543
No 259
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.23 E-value=4.2e-05 Score=73.07 Aligned_cols=189 Identities=19% Similarity=0.173 Sum_probs=109.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCC---ceEEEec-----hHHHhhhc----CCc--------hHHHHHHHHHHh-hcCCe
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSA---TFLRVVG-----SELIQKYL----GDG--------PKLVRELFRVAD-DLSPS 286 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~---~~~~v~~-----~~l~~~~~----g~~--------~~~i~~~f~~a~-~~~p~ 286 (483)
+.++|+.|||||+++|++...++. ..+.++. +.+...++ ... +..-+.+..... ...|-
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 789999999999999988776653 2223322 22222111 111 111122222222 33568
Q ss_pred EEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC-CCCCC---hhhcCCCccceEEEcCCC
Q 011553 287 IVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR-IESLD---PALLRPGRIDRKIEFPLP 362 (483)
Q Consensus 287 Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~-~~~ld---~allr~gR~~~~i~~~~P 362 (483)
++++||++.+. .+....+.-+.+.-......-.|+.|+-..- +..-- ..+-. |++..|++++.
T Consensus 134 ~l~vdEah~L~-----------~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~--R~~ir~~l~P~ 200 (269)
T COG3267 134 VLMVDEAHDLN-----------DSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ--RIDIRIELPPL 200 (269)
T ss_pred EEeehhHhhhC-----------hhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhh--eEEEEEecCCc
Confidence 99999999883 2223333333332222222223444443211 11011 12333 88766999999
Q ss_pred CHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHH
Q 011553 363 DIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAIC 442 (483)
Q Consensus 363 ~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~ 442 (483)
+.++-..+++.++..-....++ ..+..+..+...+.| .++-|.++|
T Consensus 201 ~~~~t~~yl~~~Le~a~~~~~l---------------------------------~~~~a~~~i~~~sqg-~P~lin~~~ 246 (269)
T COG3267 201 TEAETGLYLRHRLEGAGLPEPL---------------------------------FSDDALLLIHEASQG-IPRLINNLA 246 (269)
T ss_pred ChHHHHHHHHHHHhccCCCccc---------------------------------CChhHHHHHHHHhcc-chHHHHHHH
Confidence 9998899999888776433321 113335556666667 467899999
Q ss_pred HHHHHHHHHhcCCCccHHHHH
Q 011553 443 TEAGLLALRERRMKVTHTDFK 463 (483)
Q Consensus 443 ~~A~~~A~~~~~~~it~ed~~ 463 (483)
..|...|...+...|+...+.
T Consensus 247 ~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 247 TLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred HHHHHHHHHcCCCccchhhcc
Confidence 999999999999888877654
No 260
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.21 E-value=1.2e-05 Score=84.59 Aligned_cols=263 Identities=15% Similarity=0.180 Sum_probs=130.5
Q ss_pred ccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHH
Q 011553 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKL 272 (483)
Q Consensus 193 i~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~ 272 (483)
|+|.+++|..+.-++-.-..+..- ....+....+|||+|.||||||-+.+.+++-..+.++...-. ...+|-+...
T Consensus 451 IyGh~~VK~AvAlaLfGGv~kn~~-~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqG---ASavGLTa~v 526 (854)
T KOG0477|consen 451 IYGHEDVKRAVALALFGGVPKNPG-GKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQG---ASAVGLTAYV 526 (854)
T ss_pred hhchHHHHHHHHHHHhcCCccCCC-CCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCC---ccccceeEEE
Confidence 667777776665544321111100 000122334599999999999999999999877655542110 0011111000
Q ss_pred -----HHHHHHHHhh---cCCeEEEEcCCccccccccCCCCCChHHHHHHHH-----HHHHhccCCcCCCCeEEEEEeCC
Q 011553 273 -----VRELFRVADD---LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-----ELLNQLDGFDSRGDVKVILATNR 339 (483)
Q Consensus 273 -----i~~~f~~a~~---~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~-----~lL~~l~~~~~~~~v~vI~ttn~ 339 (483)
.+.+.-.+.. ...+|-+|||+|++-.+. ..+.+..+.+.-. -+...+ ..++.||+|+|.
T Consensus 527 ~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqD---RtSIHEAMEQQSISISKAGIVtsL-----qArctvIAAanP 598 (854)
T KOG0477|consen 527 RKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQD---RTSIHEAMEQQSISISKAGIVTSL-----QARCTVIAAANP 598 (854)
T ss_pred eeCCccceeeeccCeEEEccCceEEeehhhhhcccc---cchHHHHHHhcchhhhhhhHHHHH-----HhhhhhheecCC
Confidence 1111111111 123688999999994321 0111111100000 011111 246789999986
Q ss_pred C-----------C--CCChhhcCCCccceEEEcC---CCCHHHHHH--HHHHHHcCCCCCcccc-hH--HHHhhccccch
Q 011553 340 I-----------E--SLDPALLRPGRIDRKIEFP---LPDIKTRRR--IFQIHTSRMTLADDVN-LE--EFVMTKDEFSG 398 (483)
Q Consensus 340 ~-----------~--~ld~allr~gR~~~~i~~~---~P~~~~r~~--Il~~~~~~~~~~~~~~-l~--~la~~t~g~~~ 398 (483)
. + .+-.++++ ||+..+.+. .|-.+++.. ++..|.+..+-....+ +. .+-....-.+.
T Consensus 599 igGRY~~s~tFaqNV~ltePIlS--RFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq 676 (854)
T KOG0477|consen 599 IGGRYNPSLTFAQNVDLTEPILS--RFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQ 676 (854)
T ss_pred CCCccCCccchhhccccccchhh--hcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChH
Confidence 2 1 35577888 999766665 344455543 5556665544331110 00 00000011122
Q ss_pred hhHHHHHHHHHHhhc-cccccccCCHHHHH------------hcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHH
Q 011553 399 ADIKTRRRIFQIHTS-RMTLADDVNLEEFV------------MTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKA 465 (483)
Q Consensus 399 ~~i~~~~r~~~~~~~-~~~~~~~~~l~~la------------~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~A 465 (483)
.-+++++..+...-. .+. ..+.+.++ ..+--++-+-|.++++-+...|-..-+..|+.+|+..|
T Consensus 677 ~lLrkyI~yar~~v~PkL~---q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~A 753 (854)
T KOG0477|consen 677 ELLRKYIIYAREKVRPKLN---QMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMA 753 (854)
T ss_pred HHHHHHHHHHHHhcccccc---cccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHH
Confidence 223333332222111 111 22222222 11222466889998887777777778899999999999
Q ss_pred HHHHHhh
Q 011553 466 KEKVMFK 472 (483)
Q Consensus 466 l~~~~~~ 472 (483)
+.-++.+
T Consensus 754 I~v~ldS 760 (854)
T KOG0477|consen 754 IRVMLDS 760 (854)
T ss_pred HHHHHHH
Confidence 9988754
No 261
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.20 E-value=4.2e-05 Score=79.87 Aligned_cols=215 Identities=15% Similarity=0.162 Sum_probs=111.1
Q ss_pred ceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEec
Q 011553 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (483)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~ 258 (483)
..|++++.+.+.+++.=-..-+.++++++... ..+. .--..+-+||+||+||||||.++-+|+++|..+..-..
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~----~~~~--~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~N 143 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQV----AEFT--PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSN 143 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHH----HHhc--cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecC
Confidence 45788888888888865555556666665410 0000 00112348899999999999999999999976665431
Q ss_pred -------hHHHh-------hhcCCchHHHHHHHHHHhh------------cCCeEEEEcCCccccccccCCCCCChHHHH
Q 011553 259 -------SELIQ-------KYLGDGPKLVRELFRVADD------------LSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (483)
Q Consensus 259 -------~~l~~-------~~~g~~~~~i~~~f~~a~~------------~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 312 (483)
..+.. .|.... .........+.. ..+.+|+|||+-..+.. . ..+..
T Consensus 144 pi~~~~~~~~h~~t~~~~~~~~s~L-~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~------d-~~~~f 215 (634)
T KOG1970|consen 144 PINLKEPENLHNETSFLMFPYQSQL-AVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR------D-DSETF 215 (634)
T ss_pred CccccccccccccchhcccchhhHH-HHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh------h-hHHHH
Confidence 11110 011000 111112222211 13569999999766432 1 23333
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEe-CCCCCCChhhcC------CCccceEEEcCCCCHHHHHHHHHHHHcCCCC--C-c
Q 011553 313 RTMLELLNQLDGFDSRGDVKVILAT-NRIESLDPALLR------PGRIDRKIEFPLPDIKTRRRIFQIHTSRMTL--A-D 382 (483)
Q Consensus 313 ~~l~~lL~~l~~~~~~~~v~vI~tt-n~~~~ld~allr------~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~--~-~ 382 (483)
+.+++++.... .-.++||.|- +.++..++..+. ..|+. .|.|.+-...-....+...+..... . .
T Consensus 216 ~evL~~y~s~g----~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~ 290 (634)
T KOG1970|consen 216 REVLRLYVSIG----RCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSGI 290 (634)
T ss_pred HHHHHHHHhcC----CCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccCC
Confidence 33333433221 2234444443 223333333222 12554 7777765555555555554433221 1 1
Q ss_pred ccchHHHHhhccccchhhHHHHHHHHHHhh
Q 011553 383 DVNLEEFVMTKDEFSGADIKTRRRIFQIHT 412 (483)
Q Consensus 383 ~~~l~~la~~t~g~~~~~i~~~~r~~~~~~ 412 (483)
.+.....+......+++||+.++..+|..+
T Consensus 291 k~~~~~~v~~i~~~s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 291 KVPDTAEVELICQGSGGDIRSAINSLQLSS 320 (634)
T ss_pred cCchhHHHHHHHHhcCccHHHHHhHhhhhc
Confidence 112222222223345789999999998874
No 262
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.19 E-value=2.7e-06 Score=81.15 Aligned_cols=28 Identities=32% Similarity=0.559 Sum_probs=22.6
Q ss_pred CCCCCCc--eEEEcCCCCchHHHHHHHHHH
Q 011553 221 GIKPPKG--VILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 221 g~~~~~g--vLL~GppGtGKT~Laraia~~ 248 (483)
.+....| |.|.||||||||||.+.||.-
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3333444 899999999999999999973
No 263
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.15 E-value=4.3e-05 Score=74.05 Aligned_cols=135 Identities=24% Similarity=0.387 Sum_probs=79.7
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHH------HcCCceEEEechHHHhhhc-CCchHHHHHHHHHHh--------hcCC
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVAN------STSATFLRVVGSELIQKYL-GDGPKLVRELFRVAD--------DLSP 285 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~------~l~~~~~~v~~~~l~~~~~-g~~~~~i~~~f~~a~--------~~~p 285 (483)
.+.....+||.||.|.|||+||+.|.. ++..+|+.++|..+.+... ...-..+...|.-|+ ....
T Consensus 204 a~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadg 283 (531)
T COG4650 204 AIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADG 283 (531)
T ss_pred HhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCC
Confidence 345556699999999999999999875 5678999999987643210 000111222222221 1234
Q ss_pred eEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCc------CCCCeEEEEEeCC-------CCCCChhhcCCCc
Q 011553 286 SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD------SRGDVKVILATNR-------IESLDPALLRPGR 352 (483)
Q Consensus 286 ~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~------~~~~v~vI~ttn~-------~~~ld~allr~gR 352 (483)
+++|+|||..++. +-|..|+..+.+-.-+. ..+++-+|+-|.+ .-.+-..|.- |
T Consensus 284 gmlfldeigelga-----------deqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~a--r 350 (531)
T COG4650 284 GMLFLDEIGELGA-----------DEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYA--R 350 (531)
T ss_pred ceEehHhhhhcCc-----------cHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHH--h
Confidence 7999999998852 33566666666532211 1235666766643 1112233333 5
Q ss_pred cceEEEcCCCCHHHHHH
Q 011553 353 IDRKIEFPLPDIKTRRR 369 (483)
Q Consensus 353 ~~~~i~~~~P~~~~r~~ 369 (483)
+. ...|..|...+|.+
T Consensus 351 in-lwtf~lpgl~qr~e 366 (531)
T COG4650 351 IN-LWTFTLPGLRQRQE 366 (531)
T ss_pred hh-eeeeeccccccCcc
Confidence 53 56777777776654
No 264
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.14 E-value=1e-05 Score=82.84 Aligned_cols=101 Identities=23% Similarity=0.341 Sum_probs=57.1
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHcCC-ceEEEechHHHh-------hhcCCchHHHHHHHHHHhhcCCeEEEEcCC
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSA-TFLRVVGSELIQ-------KYLGDGPKLVRELFRVADDLSPSIVFIDEI 293 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l~~-~~~~v~~~~l~~-------~~~g~~~~~i~~~f~~a~~~~p~Il~iDEi 293 (483)
..+++|++||||+|+|||+|.-++.+.+.. .-.++...++.. .+.+.. .-+..+...... ...+|+|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~-~~l~~va~~l~~-~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQD-DPLPQVADELAK-ESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCC-ccHHHHHHHHHh-cCCEEEEeee
Confidence 457999999999999999999999998765 112222122211 111111 112222222221 1239999998
Q ss_pred ccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC
Q 011553 294 DAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (483)
Q Consensus 294 D~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~ 339 (483)
.-- .-++ ..+|..|+..+- ..+|++|+|||+
T Consensus 137 ~V~--------DiaD---Amil~rLf~~l~----~~gvvlVaTSN~ 167 (362)
T PF03969_consen 137 QVT--------DIAD---AMILKRLFEALF----KRGVVLVATSNR 167 (362)
T ss_pred ecc--------chhH---HHHHHHHHHHHH----HCCCEEEecCCC
Confidence 543 1112 233334444332 357899999998
No 265
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.13 E-value=1.3e-05 Score=89.87 Aligned_cols=212 Identities=18% Similarity=0.172 Sum_probs=132.7
Q ss_pred ceecccCCCCCcccccccHHHHHHHHHHHhcCCC-ChhhhhhhCCCC-CC-ceEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLT-HPELYEDIGIKP-PK-GVILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~-~~~~~~~~g~~~-~~-gvLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
..|.+++.+.+..++.|.......+...++..-. .+..|...+... .. .++++||||+|||+.++++|.+++..++.
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E 387 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVE 387 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceee
Confidence 3567777777778888887777777777765411 111222111111 11 36999999999999999999999999999
Q ss_pred EechHHHhhhc-----CC--chHHHHHHHHH--Hh-h-cCC-eEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc
Q 011553 256 VVGSELIQKYL-----GD--GPKLVRELFRV--AD-D-LSP-SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD 323 (483)
Q Consensus 256 v~~~~l~~~~~-----g~--~~~~i~~~f~~--a~-~-~~p-~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~ 323 (483)
++.+...+++. +. ....+...|.. ++ . ... .||++||+|-++. .++.....+..++..
T Consensus 388 ~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~--------~dRg~v~~l~~l~~k-- 457 (871)
T KOG1968|consen 388 KNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG--------EDRGGVSKLSSLCKK-- 457 (871)
T ss_pred cCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc--------hhhhhHHHHHHHHHh--
Confidence 99886554321 11 12223333300 00 0 112 2999999999853 244444555555542
Q ss_pred CCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCC-CCcccchHHHHhhccccchhhHH
Q 011553 324 GFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT-LADDVNLEEFVMTKDEFSGADIK 402 (483)
Q Consensus 324 ~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~-~~~~~~l~~la~~t~g~~~~~i~ 402 (483)
....+|+++|..+......+. |....++|+.|+....+.-+...+.... .-.+..+.++++.+ ++||+
T Consensus 458 -----s~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR 526 (871)
T KOG1968|consen 458 -----SSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIR 526 (871)
T ss_pred -----ccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHH
Confidence 245589999887655544444 6556899999999998876665544332 23334466666554 78888
Q ss_pred HHHHHHHHh
Q 011553 403 TRRRIFQIH 411 (483)
Q Consensus 403 ~~~r~~~~~ 411 (483)
+....++..
T Consensus 527 ~~i~~lq~~ 535 (871)
T KOG1968|consen 527 QIIMQLQFW 535 (871)
T ss_pred HHHHHHhhh
Confidence 877776654
No 266
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.11 E-value=4.1e-05 Score=75.74 Aligned_cols=149 Identities=23% Similarity=0.282 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHH--cCCce---EEEech------HHHh--
Q 011553 197 DAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANS--TSATF---LRVVGS------ELIQ-- 263 (483)
Q Consensus 197 ~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~--l~~~~---~~v~~~------~l~~-- 263 (483)
+..+++|.+.+... ....+-|.|+|++|+|||+||+.+++. ....| +.++.+ .+..
T Consensus 2 e~~~~~l~~~L~~~-----------~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLDN-----------SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHTT-----------TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhCC-----------CCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 44566666666541 133455999999999999999999987 43322 222221 1111
Q ss_pred -hhcC----------CchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeE
Q 011553 264 -KYLG----------DGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVK 332 (483)
Q Consensus 264 -~~~g----------~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~ 332 (483)
...+ ........+.+ .-...+++|+||+++... .+..+...+... ..+..
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~l~~-~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~~~k 131 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEELQDQLRE-LLKDKRCLLVLDDVWDEE----------------DLEELREPLPSF--SSGSK 131 (287)
T ss_dssp HHHHTCC-STSSCCSSHHHHHHHHHH-HHCCTSEEEEEEEE-SHH----------------HH-------HCH--HSS-E
T ss_pred cccccccccccccccccccccccchh-hhccccceeeeeeecccc----------------cccccccccccc--ccccc
Confidence 1111 11222333333 333448999999987651 121222211111 23567
Q ss_pred EEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCC
Q 011553 333 VILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT 379 (483)
Q Consensus 333 vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~ 379 (483)
||.||...... ...- .-...+.+...+.++-.++|..+.....
T Consensus 132 ilvTTR~~~v~-~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~ 174 (287)
T PF00931_consen 132 ILVTTRDRSVA-GSLG---GTDKVIELEPLSEEEALELFKKRAGRKE 174 (287)
T ss_dssp EEEEESCGGGG-TTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS
T ss_pred ccccccccccc-cccc---cccccccccccccccccccccccccccc
Confidence 88888764321 1111 1146899999999999999998865443
No 267
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.10 E-value=5.6e-05 Score=73.70 Aligned_cols=128 Identities=18% Similarity=0.243 Sum_probs=76.0
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC-----ceEEEechH------
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA-----TFLRVVGSE------ 260 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~-----~~~~v~~~~------ 260 (483)
.+.|+.-+++.|..++...+.++. -..|--+-|+|++||||.++++.||+.+-. +|+..-.+.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 367888888877766655433322 122333668999999999999999997632 322211111
Q ss_pred -HHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCc--CCCCeEEEEEe
Q 011553 261 -LIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD--SRGDVKVILAT 337 (483)
Q Consensus 261 -l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~--~~~~v~vI~tt 337 (483)
-+..|. .+....+-..+..++.+++++||+|+| .+.+..++.-+|+...... ...+.++|+-+
T Consensus 157 ~~ie~Yk---~eL~~~v~~~v~~C~rslFIFDE~DKm-----------p~gLld~lkpfLdyyp~v~gv~frkaIFIfLS 222 (344)
T KOG2170|consen 157 SKIEDYK---EELKNRVRGTVQACQRSLFIFDEVDKL-----------PPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLS 222 (344)
T ss_pred HHHHHHH---HHHHHHHHHHHHhcCCceEEechhhhc-----------CHhHHHHHhhhhccccccccccccceEEEEEc
Confidence 111121 122233444555666689999999999 5566666666666422221 12356777777
Q ss_pred CC
Q 011553 338 NR 339 (483)
Q Consensus 338 n~ 339 (483)
|.
T Consensus 223 N~ 224 (344)
T KOG2170|consen 223 NA 224 (344)
T ss_pred CC
Confidence 64
No 268
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.09 E-value=7.8e-06 Score=77.27 Aligned_cols=115 Identities=19% Similarity=0.285 Sum_probs=63.3
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHH-----h---hh----cCC-----------chHHHH
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELI-----Q---KY----LGD-----------GPKLVR 274 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~-----~---~~----~g~-----------~~~~i~ 274 (483)
|+....-++|+||||||||+++..++... +...++++..++. . .+ .+. ....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 45556669999999999999999988643 4566666664311 0 00 000 011133
Q ss_pred HHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeC
Q 011553 275 ELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (483)
Q Consensus 275 ~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn 338 (483)
.+...+....+++|+||-+..+...... +. .....+.+.+++..+..+....++.+|+|..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~--~~-~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELS--DD-RISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhC--Cc-cHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 3444455557899999999987532111 11 1112223333333332222345677777754
No 269
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.06 E-value=1.2e-05 Score=67.78 Aligned_cols=23 Identities=43% Similarity=0.772 Sum_probs=20.7
Q ss_pred eEEEcCCCCchHHHHHHHHHHcC
Q 011553 228 VILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~ 250 (483)
|+|+||||+|||++|+.+|..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998765
No 270
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.04 E-value=6.6e-05 Score=75.36 Aligned_cols=161 Identities=19% Similarity=0.273 Sum_probs=96.0
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh--------
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-------- 263 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~-------- 263 (483)
.+.+.+.++..+...+-.- .-..|..+.|||-+|||||.+++.+-+.++.+++.++|-+...
T Consensus 7 ~v~~Re~qi~~L~~Llg~~----------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNN----------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred CccchHHHHHHHHHHhCCC----------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 4568899999998877431 1245777899999999999999999999999999998866432
Q ss_pred --hh-----cCCc----hHHH---HHHHHH--Hhhc--CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCC
Q 011553 264 --KY-----LGDG----PKLV---RELFRV--ADDL--SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF 325 (483)
Q Consensus 264 --~~-----~g~~----~~~i---~~~f~~--a~~~--~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~ 325 (483)
+. .|.. ...+ ..+|.. +... +.-.|++|.+|.+- +.+.-+...++.+-..
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr--------D~~a~ll~~l~~L~el---- 144 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR--------DMDAILLQCLFRLYEL---- 144 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh--------ccchHHHHHHHHHHHH----
Confidence 11 1111 0111 223333 2222 24588999999993 1122233333333322
Q ss_pred cCCCCeEEEEEeCCCCCCChhhcCCCccc-eEEEcCCCCHHHHHHHHHHHHc
Q 011553 326 DSRGDVKVILATNRIESLDPALLRPGRID-RKIEFPLPDIKTRRRIFQIHTS 376 (483)
Q Consensus 326 ~~~~~v~vI~ttn~~~~ld~allr~gR~~-~~i~~~~P~~~~r~~Il~~~~~ 376 (483)
.....+.+|.+....+. ..+.+-|-++ ..++||.|+.++-..|+..--.
T Consensus 145 ~~~~~i~iils~~~~e~--~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 145 LNEPTIVIILSAPSCEK--QYLINTGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred hCCCceEEEEeccccHH--HhhcccCCCCceEEecCCCCHHHHHHHHhcCCc
Confidence 22334445554332221 1121122322 4789999999999999875443
No 271
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.03 E-value=3.4e-05 Score=76.21 Aligned_cols=161 Identities=19% Similarity=0.308 Sum_probs=95.7
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHH---HcCCceEEEechHHHh-----
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVAN---STSATFLRVVGSELIQ----- 263 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~---~l~~~~~~v~~~~l~~----- 263 (483)
.+.|..+..+.+.+.+.....+ ....+|++.||.|+|||++....-. +.+-+|+.+.......
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 3568888888887777653222 3467799999999999997665433 5666776654322211
Q ss_pred ----------------hhcCCchHHHHHHHHHHhh---c--CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhc
Q 011553 264 ----------------KYLGDGPKLVRELFRVADD---L--SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQL 322 (483)
Q Consensus 264 ----------------~~~g~~~~~i~~~f~~a~~---~--~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l 322 (483)
+..|.....+..++..... . .+.|.++||||-.++.. -|-.+..+++..
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~----------rQtllYnlfDis 165 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS----------RQTLLYNLFDIS 165 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch----------hhHHHHHHHHHH
Confidence 1223333333333332221 1 23355567999885431 233344444432
Q ss_pred cCCcCCCCeEEEEEeCCCCC---CChhhcCCCccceE-EEcCCC-CHHHHHHHHHHHH
Q 011553 323 DGFDSRGDVKVILATNRIES---LDPALLRPGRIDRK-IEFPLP-DIKTRRRIFQIHT 375 (483)
Q Consensus 323 ~~~~~~~~v~vI~ttn~~~~---ld~allr~gR~~~~-i~~~~P-~~~~r~~Il~~~~ 375 (483)
. ..+.+|.||+.|.+.+. +...+.+ ||... |+++++ +..+...+++..+
T Consensus 166 q--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 166 Q--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred h--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 2 23568999999987655 4466766 99754 666543 6788888888766
No 272
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.97 E-value=0.00076 Score=69.62 Aligned_cols=215 Identities=13% Similarity=0.116 Sum_probs=103.3
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHH----cCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANS----TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGT 298 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~----l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~ 298 (483)
....++++.||+|||||+++.+++.. .| -.++.+.++..... ..+. .-....+|+|||+..+--
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~-------~~lg--~v~~~DlLI~DEvgylp~ 274 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST-------RQIG--LVGRWDVVAFDEVATLKF 274 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH-------HHHh--hhccCCEEEEEcCCCCcC
Confidence 34667999999999999999998876 23 22334444432211 1111 123457999999977632
Q ss_pred cccCCCCCChHHHHHHHHHHHHhccCCcCC------CCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHH
Q 011553 299 KRYDAHSGGEREIQRTMLELLNQLDGFDSR------GDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ 372 (483)
Q Consensus 299 ~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~------~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~ 372 (483)
....+...+|...|..- ..++ .+.-+++..|-....+.-+.. ..+.-|.|..-.-..++.
T Consensus 275 -------~~~~~~v~imK~yMesg--~fsRG~~~~~a~as~vfvGNi~~~v~~~~~~-----~~Lf~~lP~~~~DsAflD 340 (449)
T TIGR02688 275 -------AKPKELIGILKNYMESG--SFTRGDETKSSDASFVFLGNVPLTSEHMVKN-----SDLFSPLPEFMRDSAFLD 340 (449)
T ss_pred -------CchHHHHHHHHHHHHhC--ceeccceeeeeeeEEEEEcccCCcchhhcCc-----ccccccCChhhhhhHHHH
Confidence 12445566666655421 1111 233344444543333322211 122223443211112232
Q ss_pred ---HHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 011553 373 ---IHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLA 449 (483)
Q Consensus 373 ---~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A 449 (483)
.++.+..+.. . -.++-..--|+..+-+..+.+.+.... + ....+.......+++.||..++-+-+....
T Consensus 341 RiH~yiPGWeipk-~-~~e~~t~~yGl~~DylsE~l~~lR~~~--~----~~~~~~~~~l~~~~~~RD~~aV~kt~Sgll 412 (449)
T TIGR02688 341 RIHGYLPGWEIPK-I-RKEMFSNGYGFVVDYFAEALRELRERE--Y----ADIVDRHFSLSPNLNTRDVIAVKKTFSGLM 412 (449)
T ss_pred hhhccCCCCcCcc-C-CHHHcccCCcchHHHHHHHHHHHHhhH--H----HHhhhhheecCCCcchhhHHHHHHHHHHHH
Confidence 1222221111 0 011112223444444444433333211 0 112333444566788899887654333221
Q ss_pred -HHhcCCCccHHHHHHHHHHHHh
Q 011553 450 -LRERRMKVTHTDFKKAKEKVMF 471 (483)
Q Consensus 450 -~~~~~~~it~ed~~~Al~~~~~ 471 (483)
+.-=...++.+||++.++-++.
T Consensus 413 KLL~P~~~~~~ee~~~~l~~Ale 435 (449)
T TIGR02688 413 KILFPHGTITKEEFTECLEPALE 435 (449)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHH
Confidence 1112456999999998887764
No 273
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.96 E-value=3.9e-05 Score=81.01 Aligned_cols=79 Identities=28% Similarity=0.450 Sum_probs=54.6
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhhh------cCC--------chHHHHHHHHHHhhc
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKY------LGD--------GPKLVRELFRVADDL 283 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~~------~g~--------~~~~i~~~f~~a~~~ 283 (483)
|+.+..-++|+|+||+|||+|+..+|... +...++++..+-.... .|. .+..+..++......
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 45556669999999999999999998765 4577777664432211 111 112345566666677
Q ss_pred CCeEEEEcCCcccccc
Q 011553 284 SPSIVFIDEIDAVGTK 299 (483)
Q Consensus 284 ~p~Il~iDEiD~l~~~ 299 (483)
.|.+|+||.+..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8899999999888644
No 274
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.92 E-value=9.3e-05 Score=65.95 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=22.7
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcC
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
...++++|+||+|||+++.-++..+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 44599999999999999999998664
No 275
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.90 E-value=1.7e-05 Score=84.26 Aligned_cols=63 Identities=16% Similarity=0.278 Sum_probs=46.1
Q ss_pred CcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC-ceEEEec
Q 011553 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA-TFLRVVG 258 (483)
Q Consensus 189 ~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~-~~~~v~~ 258 (483)
-|+|++|+++++.+|.+++..... .++ .....++|+||||+|||+||++||+.+.. +++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~------gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ------GLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH------hcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 477899999999999998843211 111 22345889999999999999999997643 5555544
No 276
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.90 E-value=6.2e-05 Score=75.67 Aligned_cols=118 Identities=18% Similarity=0.236 Sum_probs=65.2
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHH---cCCceEEEechHHHh----------------hhcCCchHHHHHHHHHHh
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANS---TSATFLRVVGSELIQ----------------KYLGDGPKLVRELFRVAD 281 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~---l~~~~~~v~~~~l~~----------------~~~g~~~~~i~~~f~~a~ 281 (483)
|++..+-+.|+||||||||+||-.++.. .+...++++..+-.. ..+...+..+..+....+
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 3555566899999999999999987754 355666666533111 011112223333333345
Q ss_pred hcCCeEEEEcCCccccccc-cCCCCCC-hH-HHHHHHHHHHHhccCCcCCCCeEEEEEeC
Q 011553 282 DLSPSIVFIDEIDAVGTKR-YDAHSGG-ER-EIQRTMLELLNQLDGFDSRGDVKVILATN 338 (483)
Q Consensus 282 ~~~p~Il~iDEiD~l~~~r-~~~~~~~-~~-~~~~~l~~lL~~l~~~~~~~~v~vI~ttn 338 (483)
...+++|+||-+..+.+.. .+...+. .. ...+.+.+.|..+.......++.+|++..
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 5678899999998887532 1111111 11 11233334444333333455777888753
No 277
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.86 E-value=8.5e-05 Score=68.57 Aligned_cols=103 Identities=25% Similarity=0.304 Sum_probs=57.4
Q ss_pred eEEEcCCCCchHHHHHHHHHHc---CCceEEEechH----HHhhh--cCC-----------------------ch-----
Q 011553 228 VILYGEPGTGKTLLAKAVANST---SATFLRVVGSE----LIQKY--LGD-----------------------GP----- 270 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~----l~~~~--~g~-----------------------~~----- 270 (483)
++++||||||||+++..++... +.+.+.++..+ +.... .|- ..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999887643 44555554321 11100 000 00
Q ss_pred HHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 271 KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 271 ~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
..+..+...+....|.+|+||++..+... ........+..++..+.. .++.+|++++...
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~~~~~~i~~l~~~l~~----~g~tvi~v~~~~~ 141 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM-------EQSTARLEIRRLLFALKR----FGVTTLLTSEQSG 141 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc-------ChHHHHHHHHHHHHHHHH----CCCEEEEEecccc
Confidence 11233444445567899999999876421 112233334445544432 2566777776543
No 278
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.86 E-value=7.6e-05 Score=76.77 Aligned_cols=79 Identities=29% Similarity=0.490 Sum_probs=53.3
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHh------hhcCC--------chHHHHHHHHHHhhc
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQ------KYLGD--------GPKLVRELFRVADDL 283 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~------~~~g~--------~~~~i~~~f~~a~~~ 283 (483)
|+.+..-++|+|+||+|||+|+..+|... +.+.+++++.+-.. ...|. .+..+..++......
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 35555669999999999999999998754 34666666543221 11111 122345566666777
Q ss_pred CCeEEEEcCCcccccc
Q 011553 284 SPSIVFIDEIDAVGTK 299 (483)
Q Consensus 284 ~p~Il~iDEiD~l~~~ 299 (483)
.|.+|+||+|..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999888643
No 279
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.85 E-value=6.3e-05 Score=71.99 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=30.3
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEech
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGS 259 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~ 259 (483)
|+....-++|+||||+|||+++..+|... +...+++++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45555669999999999999999998743 5566666665
No 280
>PF14516 AAA_35: AAA-like domain
Probab=97.84 E-value=0.0022 Score=65.26 Aligned_cols=147 Identities=17% Similarity=0.073 Sum_probs=79.6
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHh------------------hhcCC-------------ch
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQ------------------KYLGD-------------GP 270 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~------------------~~~g~-------------~~ 270 (483)
+.-+.|.||..+|||+|...+.+.+ +...+.+++..+.. ...+- ..
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 4558999999999999999887655 45556665543211 00000 11
Q ss_pred HHHHHHHHH---HhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChh-
Q 011553 271 KLVRELFRV---ADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPA- 346 (483)
Q Consensus 271 ~~i~~~f~~---a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~a- 346 (483)
......|+. .....|-||+|||+|.++... ....++...+-.+..+-.......++.+|++......+...
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~-----~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~ 185 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP-----QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDI 185 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCc-----chHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCC
Confidence 112223332 122467899999999996321 11123333333333321111112345555554332222211
Q ss_pred hcCCCccceEEEcCCCCHHHHHHHHHHHHc
Q 011553 347 LLRPGRIDRKIEFPLPDIKTRRRIFQIHTS 376 (483)
Q Consensus 347 llr~gR~~~~i~~~~P~~~~r~~Il~~~~~ 376 (483)
-.+|-.+...|.++..+.++-..+++.+-.
T Consensus 186 ~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~ 215 (331)
T PF14516_consen 186 NQSPFNIGQPIELPDFTPEEVQELAQRYGL 215 (331)
T ss_pred CCCCcccccceeCCCCCHHHHHHHHHhhhc
Confidence 123445566888898899999888887743
No 281
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.83 E-value=0.00011 Score=73.25 Aligned_cols=101 Identities=21% Similarity=0.293 Sum_probs=58.4
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHcCCce-EEEechHHHh-------hhcCCch---HHHHHHHHHHhhcCCeEEEE
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATF-LRVVGSELIQ-------KYLGDGP---KLVRELFRVADDLSPSIVFI 290 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l~~~~-~~v~~~~l~~-------~~~g~~~---~~i~~~f~~a~~~~p~Il~i 290 (483)
..+++|+.|||+-|+|||+|.-.....+..+- .++....+.. ...|... ....+++.. -.||+|
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~-----~~vLCf 136 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAE-----TRVLCF 136 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhc-----CCEEEe
Confidence 45789999999999999999999998876422 2222222211 1223331 111222222 249999
Q ss_pred cCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC-CCC
Q 011553 291 DEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR-IES 342 (483)
Q Consensus 291 DEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~-~~~ 342 (483)
||+.-- +-++ .-+|..|++++- ..+|.+++|||. |+.
T Consensus 137 DEF~Vt--------DI~D---AMiL~rL~~~Lf----~~GV~lvaTSN~~P~~ 174 (367)
T COG1485 137 DEFEVT--------DIAD---AMILGRLLEALF----ARGVVLVATSNTAPDN 174 (367)
T ss_pred eeeeec--------ChHH---HHHHHHHHHHHH----HCCcEEEEeCCCChHH
Confidence 998432 1112 233344554443 247999999997 443
No 282
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.82 E-value=6.6e-05 Score=73.85 Aligned_cols=113 Identities=21% Similarity=0.308 Sum_probs=64.8
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCC----------ceEEEe-chHHHhhhcCC-------------chHHHHHHHHHHh
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSA----------TFLRVV-GSELIQKYLGD-------------GPKLVRELFRVAD 281 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~----------~~~~v~-~~~l~~~~~g~-------------~~~~i~~~f~~a~ 281 (483)
.+++|+||+|+|||||.++++..+.. .+..++ ..++...+.+- .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 57999999999999999999987653 221111 23333221110 0111334666677
Q ss_pred hcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChh--------hcCCCcc
Q 011553 282 DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPA--------LLRPGRI 353 (483)
Q Consensus 282 ~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~a--------llr~gR~ 353 (483)
.+.|.||++||+.. . ..+..++..+. .++.+|++|+..+. ... |+..+-|
T Consensus 192 ~~~P~villDE~~~-------------~---e~~~~l~~~~~-----~G~~vI~ttH~~~~-~~~~~r~~~~~l~~~~~~ 249 (270)
T TIGR02858 192 SMSPDVIVVDEIGR-------------E---EDVEALLEALH-----AGVSIIATAHGRDV-EDLYKRPVFKELIENEAF 249 (270)
T ss_pred hCCCCEEEEeCCCc-------------H---HHHHHHHHHHh-----CCCEEEEEechhHH-HHHHhChHHHHHHhcCce
Confidence 78899999999621 1 22333333331 25678999886432 112 2334456
Q ss_pred ceEEEcC
Q 011553 354 DRKIEFP 360 (483)
Q Consensus 354 ~~~i~~~ 360 (483)
++.+.+.
T Consensus 250 ~r~i~L~ 256 (270)
T TIGR02858 250 ERYVVLS 256 (270)
T ss_pred EEEEEEe
Confidence 6666664
No 283
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.82 E-value=7.8e-05 Score=74.86 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=65.0
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHh----------------hhcCCchHHHHHHHHHHh
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQ----------------KYLGDGPKLVRELFRVAD 281 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~----------------~~~g~~~~~i~~~f~~a~ 281 (483)
|++..+.++|+||||||||+||..++... +.+.+.+++.+... ..+...+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 45556669999999999999988776543 45666665533221 001112223333333345
Q ss_pred hcCCeEEEEcCCccccccc-cCCCCCC-hHHH-HHHHHHHHHhccCCcCCCCeEEEEEeC
Q 011553 282 DLSPSIVFIDEIDAVGTKR-YDAHSGG-EREI-QRTMLELLNQLDGFDSRGDVKVILATN 338 (483)
Q Consensus 282 ~~~p~Il~iDEiD~l~~~r-~~~~~~~-~~~~-~~~l~~lL~~l~~~~~~~~v~vI~ttn 338 (483)
...+.+|+||-+..+.+.. .+...+. .... .+.+.+.|..+.......++.+|+|..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 5678899999999887532 1111111 1111 122334444333333456788888753
No 284
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.78 E-value=2.2e-05 Score=67.18 Aligned_cols=30 Identities=33% Similarity=0.585 Sum_probs=26.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEe
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~ 257 (483)
|+|.|||||||||+|+.+|+.++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999987776543
No 285
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.78 E-value=0.00015 Score=83.54 Aligned_cols=138 Identities=25% Similarity=0.312 Sum_probs=90.9
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEechH------HHhhh-cCC--chHHHHH-HHHHHhhcCCeEEEEcCCc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSE------LIQKY-LGD--GPKLVRE-LFRVADDLSPSIVFIDEID 294 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~------l~~~~-~g~--~~~~i~~-~f~~a~~~~p~Il~iDEiD 294 (483)
.+++||-|.||+|||+|..|+|+.+|..+++++.++ +++.+ +++ ++-..++ -|-.|.+ ...-|++||+.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeehhh
Confidence 467999999999999999999999999999998764 22222 122 1111111 1222322 23578999994
Q ss_pred cccccccCCCCCChHHHHHHHHHHHH--------hccC-CcCCCCeEEEEEeCCC------CCCChhhcCCCccceEEEc
Q 011553 295 AVGTKRYDAHSGGEREIQRTMLELLN--------QLDG-FDSRGDVKVILATNRI------ESLDPALLRPGRIDRKIEF 359 (483)
Q Consensus 295 ~l~~~r~~~~~~~~~~~~~~l~~lL~--------~l~~-~~~~~~v~vI~ttn~~------~~ld~allr~gR~~~~i~~ 359 (483)
-. ...+..-|+..|+ ++|. +.-..+++|.+|-|.- ..+|..++. ||. ++++
T Consensus 1622 La-----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV~~ 1687 (4600)
T COG5271 1622 LA-----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VVKM 1687 (4600)
T ss_pred hh-----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eEEe
Confidence 33 2223333444443 2222 2334578888887753 358999999 996 8899
Q ss_pred CCCCHHHHHHHHHHHHcC
Q 011553 360 PLPDIKTRRRIFQIHTSR 377 (483)
Q Consensus 360 ~~P~~~~r~~Il~~~~~~ 377 (483)
...+.++...|.......
T Consensus 1688 d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1688 DGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred cccccchHHHHHHhhCCc
Confidence 999988888888766543
No 286
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.76 E-value=0.00017 Score=67.85 Aligned_cols=107 Identities=17% Similarity=0.283 Sum_probs=58.3
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHH-----cCCce-------------EEEechHHHh----hhcCCchHHHHHHHHH
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANS-----TSATF-------------LRVVGSELIQ----KYLGDGPKLVRELFRV 279 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~-----l~~~~-------------~~v~~~~l~~----~~~g~~~~~i~~~f~~ 279 (483)
+...+-++|+||+|+|||+|++.|+.. .|.++ ..+...+-.. .+..+ ...+..+++.
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e-~~~~~~iL~~ 100 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAE-LRRLKEIVEK 100 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHH-HHHHHHHHHh
Confidence 344456899999999999999999853 33221 1111111100 01001 1335566666
Q ss_pred HhhcCCeEEEEcCCccccccccCCCCCChHH-HHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCC
Q 011553 280 ADDLSPSIVFIDEIDAVGTKRYDAHSGGERE-IQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (483)
Q Consensus 280 a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~-~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~l 343 (483)
+....|.+|++||.-.-. +.. ....+..++..+. ..+..+|++|+..+.+
T Consensus 101 ~~~~~p~llllDEp~~gl----------D~~~~~~l~~~ll~~l~----~~~~tiiivTH~~~~~ 151 (199)
T cd03283 101 AKKGEPVLFLLDEIFKGT----------NSRERQAASAAVLKFLK----NKNTIGIISTHDLELA 151 (199)
T ss_pred ccCCCCeEEEEecccCCC----------CHHHHHHHHHHHHHHHH----HCCCEEEEEcCcHHHH
Confidence 654578999999973321 211 1222233444432 1256788888876543
No 287
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.75 E-value=0.00023 Score=68.46 Aligned_cols=109 Identities=17% Similarity=0.323 Sum_probs=59.4
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechH----HHhhh--cC-----------------------C-
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSE----LIQKY--LG-----------------------D- 268 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~----l~~~~--~g-----------------------~- 268 (483)
++....++|+||||||||+++..++... +...++++..+ +.... .| .
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNS 100 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChH
Confidence 4555669999999999999976554433 44555554321 11100 00 0
Q ss_pred -chHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCC
Q 011553 269 -GPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (483)
Q Consensus 269 -~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~ 340 (483)
....+..+........|.+++|||+-.+... ..+....+.+.+++..+.. . +..+|+|++..
T Consensus 101 ~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~------~~d~~~~~~l~~~l~~l~~---~-g~tvi~t~~~~ 163 (230)
T PRK08533 101 EKRKFLKKLMNTRRFYEKDVIIIDSLSSLISN------DASEVAVNDLMAFFKRISS---L-NKVIILTANPK 163 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECccHHhcC------CcchHHHHHHHHHHHHHHh---C-CCEEEEEeccc
Confidence 0223334455555557889999999776321 1122233455566654422 2 34566676643
No 288
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00027 Score=78.96 Aligned_cols=160 Identities=24% Similarity=0.341 Sum_probs=109.5
Q ss_pred ccccccc-HHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc----------CCceEEEec
Q 011553 190 YADIGGL-DAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATFLRVVG 258 (483)
Q Consensus 190 ~~di~Gl-~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l----------~~~~~~v~~ 258 (483)
++-+.|. ++.++++.+.+.. ...++-+|+|.||+|||.++.-+|+.. +..++.++.
T Consensus 185 ldPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 3445565 7777777777654 233679999999999999999999864 235566665
Q ss_pred hHHHh--hhcCCchHHHHHHHHHHhh-cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEE
Q 011553 259 SELIQ--KYLGDGPKLVRELFRVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL 335 (483)
Q Consensus 259 ~~l~~--~~~g~~~~~i~~~f~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ 335 (483)
..+.. ++.|+.+..++.+.+.+.. ...-||||||++-+...... .+..+....|..++. ++.+.+|+
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~---~~~~d~~nlLkp~L~-------rg~l~~IG 321 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN---YGAIDAANLLKPLLA-------RGGLWCIG 321 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc---chHHHHHHhhHHHHh-------cCCeEEEe
Confidence 54443 6677888889999988774 34569999999988644321 112233333333333 45589999
Q ss_pred EeCC-----CCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHH
Q 011553 336 ATNR-----IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHT 375 (483)
Q Consensus 336 ttn~-----~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~ 375 (483)
||.. -..-+|++-+ ||+ .+.++.|+.+.-..||...-
T Consensus 322 atT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~ 363 (898)
T KOG1051|consen 322 ATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLS 363 (898)
T ss_pred cccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhh
Confidence 8852 2345799988 997 88899998877666665443
No 289
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.74 E-value=0.0003 Score=73.24 Aligned_cols=121 Identities=19% Similarity=0.264 Sum_probs=72.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCC
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSG 306 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~ 306 (483)
-++|+||.+||||++++.+.......++.++..++....... ....+ .+..+.......||||||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l-~d~~~-~~~~~~~~~~~yifLDEIq~v---------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL-LDLLR-AYIELKEREKSYIFLDEIQNV---------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH-HHHHH-HHHHhhccCCceEEEecccCc----------
Confidence 799999999999999999888876656666655554332211 11111 122222213469999999876
Q ss_pred ChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC--CCChhhcCCCccceEEEcCCCCHHHHHH
Q 011553 307 GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE--SLDPALLRPGRIDRKIEFPLPDIKTRRR 369 (483)
Q Consensus 307 ~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~--~ld~allr~gR~~~~i~~~~P~~~~r~~ 369 (483)
.+....+..+.+... . ++++.+++...- .+.+.| +||. ..+.+.+.+..+...
T Consensus 107 --~~W~~~lk~l~d~~~----~-~v~itgsss~ll~~~~~~~L--~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 107 --PDWERALKYLYDRGN----L-DVLITGSSSSLLSKEISESL--AGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred --hhHHHHHHHHHcccc----c-eEEEECCchhhhccchhhhc--CCCc-eeEEECCCCHHHHHh
Confidence 235566666654211 1 344444332222 222333 6796 588888889988865
No 290
>PHA00729 NTP-binding motif containing protein
Probab=97.73 E-value=7.6e-05 Score=71.03 Aligned_cols=24 Identities=33% Similarity=0.583 Sum_probs=22.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcC
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~ 250 (483)
+++|+|+||||||+||.+++..++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999999875
No 291
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.73 E-value=0.00016 Score=73.92 Aligned_cols=110 Identities=15% Similarity=0.280 Sum_probs=60.6
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCc------eEEEech---H---HHh---------hhcCCchHHHH---HHHHHHhh-
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSAT------FLRVVGS---E---LIQ---------KYLGDGPKLVR---ELFRVADD- 282 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~------~~~v~~~---~---l~~---------~~~g~~~~~i~---~~f~~a~~- 282 (483)
.+|+||||+|||+|++.|++..... ++.+... + +.. ++-......++ .++..|..
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999976432 2222221 1 111 11111122222 23333332
Q ss_pred ---cCCeEEEEcCCccccccccC-------CC-CCChHHHHHHHHHHHHhccCCcCCCCeEEEEEe
Q 011553 283 ---LSPSIVFIDEIDAVGTKRYD-------AH-SGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (483)
Q Consensus 283 ---~~p~Il~iDEiD~l~~~r~~-------~~-~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~tt 337 (483)
....+||||||.+++..... .. .+.+......+-.++..-......+.+.+|+|.
T Consensus 252 ~e~G~dVlL~iDsItR~arAqrev~~~sG~~~sgG~~~~~~~~~~r~f~~Arn~e~~GSlT~i~T~ 317 (416)
T PRK09376 252 VEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATA 317 (416)
T ss_pred HHcCCCEEEEEEChHHHHHHHHhhhhccCCCCCCCCChhHhhhhHHHHHhhcCCCCCcceEEEEEE
Confidence 24569999999998643211 11 233333344444555554444445677777774
No 292
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.71 E-value=0.00013 Score=69.36 Aligned_cols=72 Identities=26% Similarity=0.330 Sum_probs=40.2
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEechH--HHhh--------hcCCchHHHHHHHHHHhh--cCCeEEEEcC
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSE--LIQK--------YLGDGPKLVRELFRVADD--LSPSIVFIDE 292 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~--l~~~--------~~g~~~~~i~~~f~~a~~--~~p~Il~iDE 292 (483)
+.-+||||+||+|||++|+.++.. ..++..+.+. +.+. -....-..+.+.+..+.. ....+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 455999999999999999998632 2233333211 0000 011111233333333322 3457999999
Q ss_pred Cccccc
Q 011553 293 IDAVGT 298 (483)
Q Consensus 293 iD~l~~ 298 (483)
++.+..
T Consensus 90 I~~l~~ 95 (220)
T TIGR01618 90 ISALQN 95 (220)
T ss_pred HHHHHH
Confidence 988743
No 293
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.67 E-value=0.00014 Score=66.57 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=20.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHHc
Q 011553 227 GVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l 249 (483)
+++|+|+||+||||+++.+++.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 38999999999999999999887
No 294
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.66 E-value=0.00013 Score=69.39 Aligned_cols=117 Identities=23% Similarity=0.264 Sum_probs=61.8
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHH----hhhcCC----------------c---hHHHH
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELI----QKYLGD----------------G---PKLVR 274 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~----~~~~g~----------------~---~~~i~ 274 (483)
|+....-++|+|+||||||+++..+|... +.+.++++..... ....+. . ...+.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQ 94 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHH
Confidence 45556669999999999999999998764 4455566442210 000000 0 01122
Q ss_pred HHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC
Q 011553 275 ELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (483)
Q Consensus 275 ~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~ 339 (483)
.+..... ..+++|+||-+..+....... ........+.+..++..+..+....++.+|+++..
T Consensus 95 ~~~~~~~-~~~~lvvIDsi~~l~~~~~~~-~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~ 157 (218)
T cd01394 95 ETETFAD-EKVDLVVVDSATALYRLELGD-DDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQV 157 (218)
T ss_pred HHHHHHh-cCCcEEEEechHHhhhHHhcC-ccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCC
Confidence 2222222 237899999998875321111 11112223334444433333333457888888654
No 295
>PRK08118 topology modulation protein; Reviewed
Probab=97.66 E-value=0.0001 Score=67.35 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=29.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEec
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~~ 258 (483)
.|+++||||+||||||+.+++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 38999999999999999999999999887764
No 296
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.64 E-value=5.2e-05 Score=70.92 Aligned_cols=123 Identities=17% Similarity=0.124 Sum_probs=59.3
Q ss_pred eEEEcCCCCchHHHHHHH-HHH---cCCceEEEechHHHh----hhcCCchH-------------HHHHHHHHHhhcCCe
Q 011553 228 VILYGEPGTGKTLLAKAV-ANS---TSATFLRVVGSELIQ----KYLGDGPK-------------LVRELFRVADDLSPS 286 (483)
Q Consensus 228 vLL~GppGtGKT~Larai-a~~---l~~~~~~v~~~~l~~----~~~g~~~~-------------~i~~~f~~a~~~~p~ 286 (483)
.+++|.||+|||+.|-.. ... .+++++. +..+|.- .+.+.... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999977555 332 2444433 3221211 10000000 001111111111457
Q ss_pred EEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCC
Q 011553 287 IVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLP 362 (483)
Q Consensus 287 Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P 362 (483)
+|+|||+..+++.+.... ......+ +++.+.. ..++-||++|..+..+|+.++. +++..+.+..+
T Consensus 82 liviDEa~~~~~~r~~~~----~~~~~~~-~~l~~hR----h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG----KKVPEII-EFLAQHR----HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T--------HHH-HGGGGCC----CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEECChhhcCCCcccc----ccchHHH-HHHHHhC----cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 999999999987763211 1112223 5554433 3467899999999999999987 88877777644
No 297
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.64 E-value=0.00014 Score=66.10 Aligned_cols=106 Identities=19% Similarity=0.223 Sum_probs=64.8
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHcCC--ceEEEechHH--------HhhhcCC----c-hHHHHHHHHHHhhcCCe
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSEL--------IQKYLGD----G-PKLVRELFRVADDLSPS 286 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~~~~l--------~~~~~g~----~-~~~i~~~f~~a~~~~p~ 286 (483)
+.+...+.|.||+|+|||+|.+.++..... --+.+++..+ ....++- + ...-+-.+..|-...|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 344556999999999999999999986532 1122222111 1111111 1 12234456666677899
Q ss_pred EEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 287 IVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 287 Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
++++||-.. +-+......+.+++.++.. .+..+|++|+..+
T Consensus 103 illlDEP~~----------~LD~~~~~~l~~~l~~~~~----~~~tiii~sh~~~ 143 (163)
T cd03216 103 LLILDEPTA----------ALTPAEVERLFKVIRRLRA----QGVAVIFISHRLD 143 (163)
T ss_pred EEEEECCCc----------CCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHH
Confidence 999999733 3355667777777776531 2456777887654
No 298
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.64 E-value=0.0002 Score=63.04 Aligned_cols=37 Identities=32% Similarity=0.554 Sum_probs=30.1
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhc
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYL 266 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~ 266 (483)
|+++|||||||||+|+.++..++ +..++...+.....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~ 38 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLA 38 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHc
Confidence 78999999999999999999998 55566666665443
No 299
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.64 E-value=0.00064 Score=62.38 Aligned_cols=53 Identities=17% Similarity=0.289 Sum_probs=36.5
Q ss_pred HHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCC
Q 011553 276 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 342 (483)
Q Consensus 276 ~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ 342 (483)
.+..|--++|.+|+-||= +..-+++....++.++.++.. -+..|++||+..+.
T Consensus 147 aIARAiV~~P~vLlADEP----------TGNLDp~~s~~im~lfeeinr----~GtTVl~ATHd~~l 199 (223)
T COG2884 147 AIARAIVNQPAVLLADEP----------TGNLDPDLSWEIMRLFEEINR----LGTTVLMATHDLEL 199 (223)
T ss_pred HHHHHHccCCCeEeecCC----------CCCCChHHHHHHHHHHHHHhh----cCcEEEEEeccHHH
Confidence 455566678999999994 223366777778888887653 35678888876443
No 300
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.61 E-value=0.00014 Score=78.14 Aligned_cols=53 Identities=28% Similarity=0.317 Sum_probs=38.1
Q ss_pred HHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 274 RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 274 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
+-.|...--++|.++||||+- +.-+.+.+..+.+++++ .-.++.||..++++.
T Consensus 523 RlafARilL~kP~~v~LDEAT----------sALDe~~e~~l~q~l~~-----~lp~~tvISV~Hr~t 575 (604)
T COG4178 523 RLAFARLLLHKPKWVFLDEAT----------SALDEETEDRLYQLLKE-----ELPDATVISVGHRPT 575 (604)
T ss_pred HHHHHHHHHcCCCEEEEecch----------hccChHHHHHHHHHHHh-----hCCCCEEEEeccchh
Confidence 345667777899999999983 33366777888888863 124677888888754
No 301
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.61 E-value=0.00013 Score=73.78 Aligned_cols=28 Identities=43% Similarity=0.784 Sum_probs=24.6
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcC
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
.+|+|++|||.-|||||+|.-.+...+.
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~~ 139 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDALP 139 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcCC
Confidence 4699999999999999999999886554
No 302
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.60 E-value=0.00029 Score=66.21 Aligned_cols=66 Identities=18% Similarity=0.360 Sum_probs=42.2
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCC----ceEEEe-chHHHh---------hhcCCchHHHHHHHHHHhhcCCeEEEEcCC
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSA----TFLRVV-GSELIQ---------KYLGDGPKLVRELFRVADDLSPSIVFIDEI 293 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~----~~~~v~-~~~l~~---------~~~g~~~~~i~~~f~~a~~~~p~Il~iDEi 293 (483)
++|+||+|+||||++++++..+.. ..+.+. ..++.. ..+|.....+...+..+....|.+|++||+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcCC
Confidence 889999999999999999987753 222221 111111 011222233455666666678999999998
No 303
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.60 E-value=0.00035 Score=62.12 Aligned_cols=103 Identities=20% Similarity=0.194 Sum_probs=60.6
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHcCC--ceEEEechHHHhhhcC-Cch-HHHHHHHHHHhhcCCeEEEEcCCcccc
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSELIQKYLG-DGP-KLVRELFRVADDLSPSIVFIDEIDAVG 297 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~~~~l~~~~~g-~~~-~~i~~~f~~a~~~~p~Il~iDEiD~l~ 297 (483)
+.+...+.|.||+|+|||+|+++++..... --+.+++... -.|+. -+. ..-+-.+..+-...|.++++||-..
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~-i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~-- 99 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVK-IGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTN-- 99 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEE-EEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc--
Confidence 344556899999999999999999986532 1111111000 00110 111 1223334555566889999999743
Q ss_pred ccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCC
Q 011553 298 TKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 342 (483)
Q Consensus 298 ~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ 342 (483)
+-+......+.+++.++ +..+|++|+.++.
T Consensus 100 --------~LD~~~~~~l~~~l~~~-------~~til~~th~~~~ 129 (144)
T cd03221 100 --------HLDLESIEALEEALKEY-------PGTVILVSHDRYF 129 (144)
T ss_pred --------CCCHHHHHHHHHHHHHc-------CCEEEEEECCHHH
Confidence 23555566777777654 1357778876543
No 304
>PRK07261 topology modulation protein; Provisional
Probab=97.60 E-value=0.00012 Score=67.13 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=28.0
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEec
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~~ 258 (483)
|+|+|+||+||||||+.++..++.+++.++.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 8999999999999999999999988777654
No 305
>PRK04296 thymidine kinase; Provisional
Probab=97.59 E-value=0.00051 Score=64.11 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHc
Q 011553 228 VILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l 249 (483)
++++||+|+|||+++..++.++
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHH
Confidence 7899999999999998888765
No 306
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.58 E-value=0.00025 Score=66.37 Aligned_cols=52 Identities=21% Similarity=0.370 Sum_probs=34.7
Q ss_pred HHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC
Q 011553 274 RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (483)
Q Consensus 274 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~ 339 (483)
|-.+..|-...|.|+++||.- |.-+++.....+.++..+.. .+...|+.|+.
T Consensus 144 RVAIARALaM~P~vmLFDEPT----------SALDPElv~EVL~vm~~LA~----eGmTMivVTHE 195 (240)
T COG1126 144 RVAIARALAMDPKVMLFDEPT----------SALDPELVGEVLDVMKDLAE----EGMTMIIVTHE 195 (240)
T ss_pred HHHHHHHHcCCCCEEeecCCc----------ccCCHHHHHHHHHHHHHHHH----cCCeEEEEech
Confidence 334555666789999999973 33477777777777776542 34556666664
No 307
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.58 E-value=7.1e-05 Score=68.10 Aligned_cols=39 Identities=23% Similarity=0.426 Sum_probs=31.8
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhh
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~ 264 (483)
++..++|+|+||||||++|+++|..++.+|+. ...+...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d--~d~~~~~ 41 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFID--TDHLIEA 41 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE--ChHHHHH
Confidence 45679999999999999999999999988875 3444433
No 308
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.58 E-value=0.00082 Score=65.38 Aligned_cols=113 Identities=14% Similarity=0.302 Sum_probs=61.7
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCc------eEEEec------hHHHhhh--------cCCchHH----HHHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSAT------FLRVVG------SELIQKY--------LGDGPKL----VRELFRVA 280 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~------~~~v~~------~~l~~~~--------~g~~~~~----i~~~f~~a 280 (483)
..-++|+||+|||||+|++.+++..... |+.+.. .++.... .+..+.. ...++..|
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 3349999999999999999999987642 333222 1222221 1222211 12223333
Q ss_pred h----hcCCeEEEEcCCccccccc-------cCCCCCC-hHHHHHHHHHHHHhccCCcCCCCeEEEEEe
Q 011553 281 D----DLSPSIVFIDEIDAVGTKR-------YDAHSGG-EREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (483)
Q Consensus 281 ~----~~~p~Il~iDEiD~l~~~r-------~~~~~~~-~~~~~~~l~~lL~~l~~~~~~~~v~vI~tt 337 (483)
. .....+|||||+.++.... +...+++ +......+-+++..-..+...+.+.++.|.
T Consensus 96 ~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~ 164 (249)
T cd01128 96 KRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATA 164 (249)
T ss_pred HHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeeh
Confidence 2 2346699999998874321 2222333 344444445666544443345677777554
No 309
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.55 E-value=7.9e-05 Score=68.39 Aligned_cols=59 Identities=20% Similarity=0.438 Sum_probs=38.7
Q ss_pred ccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc---eEEEechHH
Q 011553 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT---FLRVVGSEL 261 (483)
Q Consensus 193 i~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~---~~~v~~~~l 261 (483)
++|.++.+++|...+.. . ....++.++|+|++|+|||+|++++...+... ++.+.+...
T Consensus 2 fvgR~~e~~~l~~~l~~-~---------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A---------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T---------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H---------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 57999999999998852 1 12345779999999999999999988766443 666666554
No 310
>PHA02624 large T antigen; Provisional
Probab=97.55 E-value=0.00028 Score=75.56 Aligned_cols=123 Identities=18% Similarity=0.208 Sum_probs=71.0
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccc
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 300 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r 300 (483)
|++..+.++|+||||||||+++.++++.++...+.++++.-.. + |...-.....+++||++-.-.-..
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks----------~--FwL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKL----------N--FELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchh----------H--HHhhhhhhceEEEeeecccccccc
Confidence 3445557999999999999999999999977667777544211 1 222222222588999984332111
Q ss_pred cCCCCCChHHHHHHHHHHHHhccCCcCC-------CC-----eEEEEEeCCCCCCChhhcCCCccceEEEcCC
Q 011553 301 YDAHSGGEREIQRTMLELLNQLDGFDSR-------GD-----VKVILATNRIESLDPALLRPGRIDRKIEFPL 361 (483)
Q Consensus 301 ~~~~~~~~~~~~~~l~~lL~~l~~~~~~-------~~-----v~vI~ttn~~~~ld~allr~gR~~~~i~~~~ 361 (483)
.+-.+|.-- .-+..+=+.+||..+- .. -..|.|||. ..||..+.- ||..++.|..
T Consensus 495 ~~Lp~G~~~---dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 495 KDLPSGQGM---NNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred ccCCccccc---chhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 010111110 1112333445554110 11 246777775 557888877 9988888864
No 311
>PHA02774 E1; Provisional
Probab=97.55 E-value=0.00035 Score=74.55 Aligned_cols=33 Identities=21% Similarity=0.492 Sum_probs=27.1
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEE-Ee
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLR-VV 257 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~-v~ 257 (483)
.++++|+||||||||++|.+|++.++...+. ++
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN 467 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVN 467 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 3579999999999999999999998754433 44
No 312
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.54 E-value=0.0003 Score=67.77 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=28.9
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHH---cCCceEEEec
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANS---TSATFLRVVG 258 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~---l~~~~~~v~~ 258 (483)
|++.+..++++|+||||||+++..++.. .+.+.++++.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 5666777999999999999999999754 2455555543
No 313
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.54 E-value=0.00055 Score=64.53 Aligned_cols=71 Identities=23% Similarity=0.308 Sum_probs=45.8
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCC--------ceEEEe-chHHHhhhcCCch-------------HHHHHHHHHHhhc
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSA--------TFLRVV-GSELIQKYLGDGP-------------KLVRELFRVADDL 283 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~--------~~~~v~-~~~l~~~~~g~~~-------------~~i~~~f~~a~~~ 283 (483)
.+.|+.||||||||++.|-+|.-+.. .+..++ .+++.+...|-.. -.-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 35899999999999999999986542 233333 3444432222111 1123456667788
Q ss_pred CCeEEEEcCCccc
Q 011553 284 SPSIVFIDEIDAV 296 (483)
Q Consensus 284 ~p~Il~iDEiD~l 296 (483)
.|.|+++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999999544
No 314
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.52 E-value=0.00054 Score=72.47 Aligned_cols=78 Identities=28% Similarity=0.399 Sum_probs=52.0
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhh------hcCCc--------hHHHHHHHHHHhhc
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQK------YLGDG--------PKLVRELFRVADDL 283 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~------~~g~~--------~~~i~~~f~~a~~~ 283 (483)
|+.+..-++|+|+||+|||+|+..++... +.+.+++++.+-... ..|-. +..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 45556669999999999999999987754 345666665432211 11111 12245556666667
Q ss_pred CCeEEEEcCCccccc
Q 011553 284 SPSIVFIDEIDAVGT 298 (483)
Q Consensus 284 ~p~Il~iDEiD~l~~ 298 (483)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999988753
No 315
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.50 E-value=0.00052 Score=63.27 Aligned_cols=106 Identities=19% Similarity=0.154 Sum_probs=61.2
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCC--ceEEEechHH--HhhhcCCc-hHHHHHHHHHHhhcCCeEEEEcCCcccc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSEL--IQKYLGDG-PKLVRELFRVADDLSPSIVFIDEIDAVG 297 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~~~~l--~~~~~g~~-~~~i~~~f~~a~~~~p~Il~iDEiD~l~ 297 (483)
.+..-+.|.||+|+|||||++.++..... --+.+++..+ ......-+ ...-+-.+..+-...|.++++||--.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts-- 100 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA-- 100 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc--
Confidence 44455889999999999999999986432 1122222111 00000011 12223345555566789999999743
Q ss_pred ccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 298 TKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 298 ~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
+-+......+.+++.++.. ..+..+|++|+..+
T Consensus 101 --------~LD~~~~~~l~~~l~~~~~---~~~~tiiivsH~~~ 133 (177)
T cd03222 101 --------YLDIEQRLNAARAIRRLSE---EGKKTALVVEHDLA 133 (177)
T ss_pred --------cCCHHHHHHHHHHHHHHHH---cCCCEEEEEECCHH
Confidence 3355566666777765421 22356777887654
No 316
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.0013 Score=62.87 Aligned_cols=140 Identities=11% Similarity=0.075 Sum_probs=95.4
Q ss_pred CCCCceEEEcCCC-CchHHHHHHHHHHcCC---------ceEEEechHHHhhh-cCCchHHHHHHHHHHhh----cCCeE
Q 011553 223 KPPKGVILYGEPG-TGKTLLAKAVANSTSA---------TFLRVVGSELIQKY-LGDGPKLVRELFRVADD----LSPSI 287 (483)
Q Consensus 223 ~~~~gvLL~GppG-tGKT~Laraia~~l~~---------~~~~v~~~~l~~~~-~g~~~~~i~~~f~~a~~----~~p~I 287 (483)
+.....||.|..+ +||..++..++..+.. .|+.+....-..+. ..-.-..+|++...+.. ....|
T Consensus 13 kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 13 KLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred cchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEE
Confidence 3455699999998 9999999888876532 34444321100000 00123445555544432 23459
Q ss_pred EEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHH
Q 011553 288 VFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTR 367 (483)
Q Consensus 288 l~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r 367 (483)
++|+++|.| +.+....|+..|++ +..++.+|+.|+.++.+.|.+++ |+. .+.|+.|+...-
T Consensus 93 iII~~ae~m-----------t~~AANALLKtLEE-----PP~~t~fILit~~~~~LLpTIrS--RCq-~i~~~~p~~~~~ 153 (263)
T PRK06581 93 AIIYSAELM-----------NLNAANSCLKILED-----APKNSYIFLITSRAASIISTIRS--RCF-KINVRSSILHAY 153 (263)
T ss_pred EEEechHHh-----------CHHHHHHHHHhhcC-----CCCCeEEEEEeCChhhCchhHhh--ceE-EEeCCCCCHHHH
Confidence 999999999 55566677776664 56789999999999999999999 995 899999998888
Q ss_pred HHHHHHHHcCCCCC
Q 011553 368 RRIFQIHTSRMTLA 381 (483)
Q Consensus 368 ~~Il~~~~~~~~~~ 381 (483)
.+++...+..+.-.
T Consensus 154 ~e~~~~~~~p~~~~ 167 (263)
T PRK06581 154 NELYSQFIQPIADN 167 (263)
T ss_pred HHHHHHhccccccc
Confidence 87777766655433
No 317
>PRK09354 recA recombinase A; Provisional
Probab=97.49 E-value=0.00038 Score=70.60 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=48.5
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHH---cCCceEEEechHHHh----------------hhcCCchHHHHHHHHHHh
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANS---TSATFLRVVGSELIQ----------------KYLGDGPKLVRELFRVAD 281 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~---l~~~~~~v~~~~l~~----------------~~~g~~~~~i~~~f~~a~ 281 (483)
|++..+-++|+||||||||+||-.++.. .+...++++..+-.. ..+...+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 4555566999999999999999977653 355666665443111 001111222222223344
Q ss_pred hcCCeEEEEcCCccccc
Q 011553 282 DLSPSIVFIDEIDAVGT 298 (483)
Q Consensus 282 ~~~p~Il~iDEiD~l~~ 298 (483)
...+.+|+||-+-.+.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 55788999999988875
No 318
>PRK13695 putative NTPase; Provisional
Probab=97.47 E-value=0.0021 Score=58.94 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.1
Q ss_pred eEEEcCCCCchHHHHHHHHHHc
Q 011553 228 VILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l 249 (483)
++|+|++|+|||+|++.++..+
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999988765
No 319
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.47 E-value=0.00032 Score=66.94 Aligned_cols=117 Identities=21% Similarity=0.273 Sum_probs=62.6
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---C------CceEEEechHH------Hh---hh-------cC-------C
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---S------ATFLRVVGSEL------IQ---KY-------LG-------D 268 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---~------~~~~~v~~~~l------~~---~~-------~g-------~ 268 (483)
|+....-+.|+||||+|||+++..+|... + ...++++..+- .. .+ .. .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 45556669999999999999999998653 2 44555554321 10 00 00 0
Q ss_pred chHHHHHHHHHH----hhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeC
Q 011553 269 GPKLVRELFRVA----DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (483)
Q Consensus 269 ~~~~i~~~f~~a----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn 338 (483)
....+...+... ....+.+|+||-+..+....... .+...+..+.+.+++..+..+....++.||++..
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~-~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG-RGMLAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcC-CchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 111112222222 24467899999998875432111 1001222344445555444444445777777763
No 320
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.46 E-value=0.0011 Score=61.10 Aligned_cols=105 Identities=17% Similarity=0.189 Sum_probs=60.6
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCC-------------ceEEEechHHHhhh----------cCCch--HHHHHHH
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSA-------------TFLRVVGSELIQKY----------LGDGP--KLVRELF 277 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~-------------~~~~v~~~~l~~~~----------~g~~~--~~i~~~f 277 (483)
.+..-+.|.||+|+|||||.+++....+. ++..+.-.++...+ ..... ...+-.+
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~l 98 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKL 98 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHH
Confidence 34445889999999999999999743222 11121111111111 11111 1223345
Q ss_pred HHHhhcC--CeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 278 RVADDLS--PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 278 ~~a~~~~--p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
..+-... |.++++||--. +-+......+.+++.++.. .+..||++|+.++
T Consensus 99 aral~~~~~p~llLlDEPt~----------~LD~~~~~~l~~~l~~~~~----~g~tvIivSH~~~ 150 (176)
T cd03238 99 ASELFSEPPGTLFILDEPST----------GLHQQDINQLLEVIKGLID----LGNTVILIEHNLD 150 (176)
T ss_pred HHHHhhCCCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHH
Confidence 5555667 89999999743 3355566677777765421 2456788888765
No 321
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.46 E-value=0.00085 Score=61.35 Aligned_cols=107 Identities=26% Similarity=0.374 Sum_probs=62.8
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHcCC--ceEEEechHHH-------hh---hcCC--------------c-hHHHH
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSELI-------QK---YLGD--------------G-PKLVR 274 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~~~~l~-------~~---~~g~--------------~-~~~i~ 274 (483)
+.+...+.|.||+|+|||+|.++++..... --+.+++..+. .. |... + ...-+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~r 104 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQR 104 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHH
Confidence 344556999999999999999999986531 11222221110 00 0000 0 01112
Q ss_pred HHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCC
Q 011553 275 ELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (483)
Q Consensus 275 ~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~l 343 (483)
-.+..+-...|.++++||--. +-+......+.+++.++. . +..+|++|+.++.+
T Consensus 105 l~la~al~~~p~llllDEP~~----------gLD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 158 (171)
T cd03228 105 IAIARALLRDPPILILDEATS----------ALDPETEALILEALRALA----K-GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCc----------CCCHHHHHHHHHHHHHhc----C-CCEEEEEecCHHHH
Confidence 234455556899999999633 335556677777777652 1 36788888876654
No 322
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.46 E-value=0.0012 Score=64.86 Aligned_cols=93 Identities=16% Similarity=0.215 Sum_probs=59.2
Q ss_pred CCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC---ceEEEe-chHHHh
Q 011553 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA---TFLRVV-GSELIQ 263 (483)
Q Consensus 188 ~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~---~~~~v~-~~~l~~ 263 (483)
.++.+++-.++..+.+++.+..+ ...++|.||+|+||||+++++...+.. .++.+. ..++.-
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~~--------------~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEKP--------------HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhcC--------------CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 45667766666777776666431 233899999999999999999877643 233331 112111
Q ss_pred -----hhcC-CchHHHHHHHHHHhhcCCeEEEEcCCc
Q 011553 264 -----KYLG-DGPKLVRELFRVADDLSPSIVFIDEID 294 (483)
Q Consensus 264 -----~~~g-~~~~~i~~~f~~a~~~~p~Il~iDEiD 294 (483)
..+. ........++..+....|++|+++|+.
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 0111 111235566777777899999999994
No 323
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.46 E-value=0.001 Score=63.31 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.1
Q ss_pred CceEEEcCCCCchHHHHHHHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~ 247 (483)
+.++|+||+|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5699999999999999999983
No 324
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.45 E-value=0.00031 Score=67.45 Aligned_cols=117 Identities=23% Similarity=0.344 Sum_probs=62.7
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---------CCceEEEechHH------Hh---h-------hc--------C
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---------SATFLRVVGSEL------IQ---K-------YL--------G 267 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---------~~~~~~v~~~~l------~~---~-------~~--------g 267 (483)
|+....-+.|+||||||||+++..+|... +...++++..+- .. . .. .
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 45555668999999999999999998542 245566654331 00 0 00 0
Q ss_pred Cch---HHHHHHHHHHhhc-CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeC
Q 011553 268 DGP---KLVRELFRVADDL-SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (483)
Q Consensus 268 ~~~---~~i~~~f~~a~~~-~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn 338 (483)
... ..+..+-...... .+.+|+||-+..+........ +...+..+.+.+++..+..+....++.||+|..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGR-GELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 001 1112222233344 788999999988753211111 001223344455555444443345677777753
No 325
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.45 E-value=0.0025 Score=64.20 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=49.9
Q ss_pred CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC---CC-----------C--hhh
Q 011553 284 SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE---SL-----------D--PAL 347 (483)
Q Consensus 284 ~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~---~l-----------d--~al 347 (483)
.+-||+|||+|++- .+....+++.+..+ -...++++|.+.+... .+ + .-|
T Consensus 172 ~~iViiIDdLDR~~-----------~~~i~~~l~~ik~~---~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yL 237 (325)
T PF07693_consen 172 KRIVIIIDDLDRCS-----------PEEIVELLEAIKLL---LDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYL 237 (325)
T ss_pred ceEEEEEcchhcCC-----------cHHHHHHHHHHHHh---cCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHH
Confidence 35699999999992 23333444444443 3347888998886411 01 1 113
Q ss_pred cCCCccceEEEcCCCCHHHHHHHHHHHHcCC
Q 011553 348 LRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM 378 (483)
Q Consensus 348 lr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~ 378 (483)
-. -|+..+.+|.|+..+...++...+...
T Consensus 238 eK--iiq~~~~lP~~~~~~~~~~~~~~~~~~ 266 (325)
T PF07693_consen 238 EK--IIQVPFSLPPPSPSDLERYLNELLESL 266 (325)
T ss_pred Hh--hcCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence 23 567789999999988888877665443
No 326
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.44 E-value=0.00037 Score=60.02 Aligned_cols=51 Identities=24% Similarity=0.426 Sum_probs=38.6
Q ss_pred ccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCc--eEEEcCCCCchHHHHHHHHHHc
Q 011553 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKG--VILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 191 ~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~g--vLL~GppGtGKT~Laraia~~l 249 (483)
..|.|+.-+.+.|..++...+..+ .+.+. +-|+|+||||||++++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~--------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP--------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC--------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 357899988888888777644332 23333 5599999999999999999975
No 327
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.44 E-value=0.011 Score=61.14 Aligned_cols=79 Identities=19% Similarity=0.200 Sum_probs=48.6
Q ss_pred EEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC---CCCCChhhcCCCccceEEEcCCCC
Q 011553 287 IVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR---IESLDPALLRPGRIDRKIEFPLPD 363 (483)
Q Consensus 287 Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~---~~~ld~allr~gR~~~~i~~~~P~ 363 (483)
||+||.+..-. ..+..+...|.++-..+-. ..---||+.|+. ...|..+| |+|.-+.|.+...+
T Consensus 151 VVVIdnF~~k~--------~~~~~iy~~laeWAa~Lv~---~nIAHVIFlT~dv~~~k~LskaL--Pn~vf~tI~L~Das 217 (431)
T PF10443_consen 151 VVVIDNFLHKA--------EENDFIYDKLAEWAASLVQ---NNIAHVIFLTDDVSYSKPLSKAL--PNRVFKTISLSDAS 217 (431)
T ss_pred EEEEcchhccC--------cccchHHHHHHHHHHHHHh---cCccEEEEECCCCchhhhHHHhC--CCCceeEEeecCCC
Confidence 99999985431 1133444555555443211 111235555544 33466677 55877899999999
Q ss_pred HHHHHHHHHHHHcCC
Q 011553 364 IKTRRRIFQIHTSRM 378 (483)
Q Consensus 364 ~~~r~~Il~~~~~~~ 378 (483)
.+.-+.++..++...
T Consensus 218 ~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 218 PESAKQYVLSQLDED 232 (431)
T ss_pred HHHHHHHHHHHhccc
Confidence 999888888887654
No 328
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.42 E-value=0.00085 Score=61.10 Aligned_cols=103 Identities=26% Similarity=0.326 Sum_probs=60.9
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHcCC-----------ceEEEech------HHHhh----hcCCch--HHHHHHHH
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSA-----------TFLRVVGS------ELIQK----YLGDGP--KLVRELFR 278 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l~~-----------~~~~v~~~------~l~~~----~~g~~~--~~i~~~f~ 278 (483)
+.+..-+.|.||+|+|||+|++.++..... .+..+... .+... ...... ..-+-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~la 103 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFA 103 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHH
Confidence 344555999999999999999999986431 01111000 01110 111111 12233455
Q ss_pred HHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 279 VADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 279 ~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
.|-...|.++++||-.. +-+......+.+++.++ ...+|++|++++
T Consensus 104 ral~~~p~~lllDEPt~----------~LD~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 104 RLLLHKPKFVFLDEATS----------ALDEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HHHHcCCCEEEEECCcc----------ccCHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 55566889999999743 23556667777777654 246788888754
No 329
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00054 Score=66.23 Aligned_cols=56 Identities=23% Similarity=0.385 Sum_probs=40.3
Q ss_pred HHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCC
Q 011553 274 RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (483)
Q Consensus 274 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~l 343 (483)
+-++..|-...|.++++||- ..+-+...+..+.++|.++.. . +..|++.|+....+
T Consensus 147 RV~lARAL~~~p~lllLDEP----------~~gvD~~~~~~i~~lL~~l~~---e-g~tIl~vtHDL~~v 202 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEP----------FTGVDVAGQKEIYDLLKELRQ---E-GKTVLMVTHDLGLV 202 (254)
T ss_pred HHHHHHHhccCCCEEEecCC----------cccCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCcHHh
Confidence 34566677778999999995 234466677888888887753 3 67888888876543
No 330
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.40 E-value=0.0013 Score=60.56 Aligned_cols=107 Identities=19% Similarity=0.232 Sum_probs=63.8
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHcCC--ceEEEechHHH------hh---h----------------cCCc--hHH
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSELI------QK---Y----------------LGDG--PKL 272 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~~~~l~------~~---~----------------~g~~--~~~ 272 (483)
+.+...+.|.||+|+|||+|+++++..... --+.+++..+. .. | .... ...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~ 104 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGER 104 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHH
Confidence 344556999999999999999999986431 11222221110 00 0 0000 112
Q ss_pred HHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCC
Q 011553 273 VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (483)
Q Consensus 273 i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~l 343 (483)
-+-.+..|-...|.++++||-.. +-+......+.+++.++. . +..+|++|+.++.+
T Consensus 105 qrv~laral~~~p~~lllDEP~~----------~LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 160 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTV----------GLDPITERQLLSLIFEVL----K-DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcc----------cCCHHHHHHHHHHHHHHc----C-CCEEEEEecCHHHH
Confidence 23345555567899999999743 235556677777777652 2 35677788776544
No 331
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.40 E-value=0.0002 Score=69.40 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l 249 (483)
..-+.|.||.|||||||.|+++.-+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3348899999999999999999844
No 332
>PRK06762 hypothetical protein; Provisional
Probab=97.39 E-value=0.0007 Score=61.39 Aligned_cols=38 Identities=26% Similarity=0.345 Sum_probs=31.7
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~ 263 (483)
.-++|+|+|||||||+|+.+++.++..++.++...+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 44889999999999999999999976677777766654
No 333
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.39 E-value=0.00095 Score=62.60 Aligned_cols=71 Identities=21% Similarity=0.289 Sum_probs=39.3
Q ss_pred CceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHh----hhcCCchHHHHHHHHHHh---------hcCCeEEE
Q 011553 226 KGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQ----KYLGDGPKLVRELFRVAD---------DLSPSIVF 289 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~----~~~g~~~~~i~~~f~~a~---------~~~p~Il~ 289 (483)
+.++|.||||||||++++.++..+ +..++.+..+.-.. ...+.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 348889999999999999987654 44555554433211 111222222333322221 12236999
Q ss_pred EcCCccc
Q 011553 290 IDEIDAV 296 (483)
Q Consensus 290 iDEiD~l 296 (483)
|||+..+
T Consensus 99 VDEasmv 105 (196)
T PF13604_consen 99 VDEASMV 105 (196)
T ss_dssp ESSGGG-
T ss_pred Eeccccc
Confidence 9999777
No 334
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.38 E-value=0.0021 Score=61.86 Aligned_cols=133 Identities=18% Similarity=0.320 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCCce--EEEechHHHh---hh-----cCC---c---hHHH-------HHHHHH
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATF--LRVVGSELIQ---KY-----LGD---G---PKLV-------RELFRV 279 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~~~--~~v~~~~l~~---~~-----~g~---~---~~~i-------~~~f~~ 279 (483)
..+..+++.|++|||||+++..+...+...| +.+.+..... .| +.. . +..+ ......
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 3455699999999999999999987665422 2222211111 11 110 0 0011 111111
Q ss_pred Hhh---cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceE
Q 011553 280 ADD---LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRK 356 (483)
Q Consensus 280 a~~---~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~ 356 (483)
... ..+.+|+||++.. . .--+..+.+++... ..-++.+|.++.....+|+.++. -++.+
T Consensus 91 ~~~~k~~~~~LiIlDD~~~---~---------~~k~~~l~~~~~~g----RH~~is~i~l~Q~~~~lp~~iR~--n~~y~ 152 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGD---K---------KLKSKILRQFFNNG----RHYNISIIFLSQSYFHLPPNIRS--NIDYF 152 (241)
T ss_pred hcccCCCCCeEEEEeCCCC---c---------hhhhHHHHHHHhcc----cccceEEEEEeeecccCCHHHhh--cceEE
Confidence 111 2357999999732 1 01123455666532 23468899999988999999876 67767
Q ss_pred EEcCCCCHHHHHHHHHHH
Q 011553 357 IEFPLPDIKTRRRIFQIH 374 (483)
Q Consensus 357 i~~~~P~~~~r~~Il~~~ 374 (483)
+.+. .+..+...|++.+
T Consensus 153 i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 153 IIFN-NSKRDLENIYRNM 169 (241)
T ss_pred EEec-CcHHHHHHHHHhc
Confidence 7665 4555655555544
No 335
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.37 E-value=0.00061 Score=64.75 Aligned_cols=55 Identities=27% Similarity=0.399 Sum_probs=35.5
Q ss_pred HHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 274 RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 274 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
|-.+..|....|.+||+||=. ++-++-....+.+|+..+.. .-+..+|+.|+..+
T Consensus 153 RvaLARAialdPell~~DEPt----------sGLDPI~a~~~~~LI~~L~~---~lg~T~i~VTHDl~ 207 (263)
T COG1127 153 RVALARAIALDPELLFLDEPT----------SGLDPISAGVIDELIRELND---ALGLTVIMVTHDLD 207 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCC----------CCCCcchHHHHHHHHHHHHH---hhCCEEEEEECChH
Confidence 445677777889999999952 33344445666666665432 23566788887644
No 336
>PRK03839 putative kinase; Provisional
Probab=97.37 E-value=0.00015 Score=66.80 Aligned_cols=29 Identities=28% Similarity=0.578 Sum_probs=27.1
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEE
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRV 256 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v 256 (483)
|+|.|+||+||||+++.+|+.++.+|+.+
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~ 31 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDL 31 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 89999999999999999999999988764
No 337
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.37 E-value=0.00035 Score=71.38 Aligned_cols=68 Identities=16% Similarity=0.298 Sum_probs=44.7
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCC----ceEEE-echHHHh---------hhcCCchHHHHHHHHHHhhcCCeEEEEc
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSA----TFLRV-VGSELIQ---------KYLGDGPKLVRELFRVADDLSPSIVFID 291 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~----~~~~v-~~~~l~~---------~~~g~~~~~i~~~f~~a~~~~p~Il~iD 291 (483)
..++|+||+|+||||+.+++...+.. .++.+ +..++.. ..+|.........+..+-...|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 34899999999999999999987652 22222 1122211 1122222235566777777899999999
Q ss_pred CC
Q 011553 292 EI 293 (483)
Q Consensus 292 Ei 293 (483)
|+
T Consensus 203 Ei 204 (343)
T TIGR01420 203 EM 204 (343)
T ss_pred CC
Confidence 98
No 338
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.37 E-value=0.0023 Score=73.72 Aligned_cols=141 Identities=17% Similarity=0.229 Sum_probs=78.9
Q ss_pred CCCCCceEEEcCCCCchHHH-HHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcC---------------C
Q 011553 222 IKPPKGVILYGEPGTGKTLL-AKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLS---------------P 285 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~L-araia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~---------------p 285 (483)
....++++++||||+|||+| +-++-+++-..++.++.+.-. .++..++ +++.-...- -
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls-~Ler~t~yy~~tg~~~l~PK~~vK~ 1564 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLS-VLERETEYYPNTGVVRLYPKPVVKD 1564 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHH-HHHhhceeeccCCeEEEccCcchhh
Confidence 45678899999999999996 456777776667666554311 1122222 122111111 1
Q ss_pred eEEEEcCCccccccccCCCCCChHHHHHHHH-HHHHhccCCcC--------CCCeEEEEEeCCCCCCC-----hhhcCCC
Q 011553 286 SIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDS--------RGDVKVILATNRIESLD-----PALLRPG 351 (483)
Q Consensus 286 ~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~-~lL~~l~~~~~--------~~~v~vI~ttn~~~~ld-----~allr~g 351 (483)
.|+|.|||. |- ....-.+. .. -.++ .++. -.|+-. -.++.+.+++|.+.+.- ..++|
T Consensus 1565 lVLFcDeIn-Lp-~~~~y~~~---~v-I~FlR~l~e-~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r-- 1635 (3164)
T COG5245 1565 LVLFCDEIN-LP-YGFEYYPP---TV-IVFLRPLVE-RQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR-- 1635 (3164)
T ss_pred eEEEeeccC-Cc-cccccCCC---ce-EEeeHHHHH-hcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc--
Confidence 399999997 32 21111000 00 1112 2222 222211 24688999999865432 33333
Q ss_pred ccceEEEcCCCCHHHHHHHHHHHHcCC
Q 011553 352 RIDRKIEFPLPDIKTRRRIFQIHTSRM 378 (483)
Q Consensus 352 R~~~~i~~~~P~~~~r~~Il~~~~~~~ 378 (483)
+ ...+++..|.....+.|...++.+.
T Consensus 1636 ~-~v~vf~~ype~~SL~~Iyea~l~~s 1661 (3164)
T COG5245 1636 K-PVFVFCCYPELASLRNIYEAVLMGS 1661 (3164)
T ss_pred C-ceEEEecCcchhhHHHHHHHHHHHH
Confidence 2 2477888999999999988776553
No 339
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.37 E-value=0.00095 Score=60.09 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=22.8
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
.+.-.++|+||+|||||+|.+++|.-.
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 344459999999999999999999854
No 340
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=0.00055 Score=61.59 Aligned_cols=107 Identities=25% Similarity=0.318 Sum_probs=62.1
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCC--ceEEEechHHH-------hhhcC----Cc-hHHHHHHHHHHhhcCCeEE
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSELI-------QKYLG----DG-PKLVRELFRVADDLSPSIV 288 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~~~~l~-------~~~~g----~~-~~~i~~~f~~a~~~~p~Il 288 (483)
.+...+.|.||+|+|||+|+++++..+.. --+.+++..+. ...++ -+ -...+-.+..+-...|.++
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEE
Confidence 44456999999999999999999986542 11233322111 01111 11 1222333555555678899
Q ss_pred EEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCC
Q 011553 289 FIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (483)
Q Consensus 289 ~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~l 343 (483)
++||...- .+......+.+++.++.. . +..+|++|+..+.+
T Consensus 103 ilDEp~~~----------lD~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~~~ 143 (157)
T cd00267 103 LLDEPTSG----------LDPASRERLLELLRELAE---E-GRTVIIVTHDPELA 143 (157)
T ss_pred EEeCCCcC----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHH
Confidence 99998533 244455666666665422 2 35678888765543
No 341
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.36 E-value=0.0016 Score=62.98 Aligned_cols=37 Identities=30% Similarity=0.459 Sum_probs=27.5
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHH---cCCceEEEe
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANS---TSATFLRVV 257 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~---l~~~~~~v~ 257 (483)
|+.....+|++||||||||+++..++.+ .+.+.++++
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 5667777999999999999999876543 244555554
No 342
>PRK13947 shikimate kinase; Provisional
Probab=97.35 E-value=0.00018 Score=65.59 Aligned_cols=31 Identities=39% Similarity=0.507 Sum_probs=28.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEe
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~ 257 (483)
+|+|.|+||||||++++.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 4999999999999999999999999987643
No 343
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.34 E-value=0.00086 Score=64.15 Aligned_cols=76 Identities=33% Similarity=0.478 Sum_probs=47.9
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc----CCceEEEechH----HHh----------hh-----------------
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST----SATFLRVVGSE----LIQ----------KY----------------- 265 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l----~~~~~~v~~~~----l~~----------~~----------------- 265 (483)
|++.+..+|++||||||||+++..++... +.+.+.++..+ +.. .+
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 56667779999999999999998776432 66666665321 111 00
Q ss_pred --cCCchHHHHHHHHHHhhcCCeEEEEcCCccc
Q 011553 266 --LGDGPKLVRELFRVADDLSPSIVFIDEIDAV 296 (483)
Q Consensus 266 --~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l 296 (483)
.......+..+........+.+++||-+..+
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 0112233444555555667799999999888
No 344
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.34 E-value=0.0004 Score=80.17 Aligned_cols=137 Identities=17% Similarity=0.224 Sum_probs=93.9
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEech------HHHhhhcCCchHHH---HHHHHHHhhcCCeEEEEcCCcc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGS------ELIQKYLGDGPKLV---RELFRVADDLSPSIVFIDEIDA 295 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~------~l~~~~~g~~~~~i---~~~f~~a~~~~p~Il~iDEiD~ 295 (483)
...+||-||.-+|||+....+|..+|..|++++-. +.+++|+....+.+ ..++-.|.+.. .-|++||+.-
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNL 966 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNL 966 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeecccc
Confidence 34499999999999999999999999999999754 44555554332211 22233332222 3688999843
Q ss_pred ccccccCCCCCChHHHHHHHHHHHHhccC---------CcCCCCeEEEEEeCCCC------CCChhhcCCCccceEEEcC
Q 011553 296 VGTKRYDAHSGGEREIQRTMLELLNQLDG---------FDSRGDVKVILATNRIE------SLDPALLRPGRIDRKIEFP 360 (483)
Q Consensus 296 l~~~r~~~~~~~~~~~~~~l~~lL~~l~~---------~~~~~~v~vI~ttn~~~------~ld~allr~gR~~~~i~~~ 360 (483)
. ..++..+|+.||+.-.. ..+..++++.+|-|.|- .+..|++. ||- .++|.
T Consensus 967 A-----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl-E~hFd 1032 (4600)
T COG5271 967 A-----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL-EMHFD 1032 (4600)
T ss_pred C-----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-hhhcc
Confidence 3 45677888888864322 23455778888878764 36788887 995 77787
Q ss_pred CCCHHHHHHHHHHHHc
Q 011553 361 LPDIKTRRRIFQIHTS 376 (483)
Q Consensus 361 ~P~~~~r~~Il~~~~~ 376 (483)
.-..++...|++..+.
T Consensus 1033 dipedEle~ILh~rc~ 1048 (4600)
T COG5271 1033 DIPEDELEEILHGRCE 1048 (4600)
T ss_pred cCcHHHHHHHHhccCc
Confidence 7777888888875543
No 345
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.33 E-value=0.0012 Score=60.39 Aligned_cols=106 Identities=23% Similarity=0.322 Sum_probs=62.4
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCC--ceEEEechHH--------Hh--hhcC---------------CchHHHHH
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSEL--------IQ--KYLG---------------DGPKLVRE 275 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~~~~l--------~~--~~~g---------------~~~~~i~~ 275 (483)
.+..-+.|.||+|+|||+|.++++..... --+.+++..+ .. .|+. .....-+-
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv 105 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRL 105 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHH
Confidence 34445899999999999999999986431 1112222111 00 0100 00112233
Q ss_pred HHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCC
Q 011553 276 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 342 (483)
Q Consensus 276 ~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ 342 (483)
.+..+-...|.++++||--. +-+......+.+++..+.. .+..+|++|+..+.
T Consensus 106 ~la~al~~~p~~lllDEPt~----------~LD~~~~~~l~~~l~~~~~----~~~tii~~sh~~~~ 158 (173)
T cd03246 106 GLARALYGNPRILVLDEPNS----------HLDVEGERALNQAIAALKA----AGATRIVIAHRPET 158 (173)
T ss_pred HHHHHHhcCCCEEEEECCcc----------ccCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHH
Confidence 45556667899999999743 3355666777777766532 24567888886553
No 346
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.32 E-value=0.00098 Score=65.55 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=27.8
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc----CCceEEEec
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST----SATFLRVVG 258 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l----~~~~~~v~~ 258 (483)
|+....-++|.|+||+|||+++..+|... +.+.+.++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 44555669999999999999999887653 445555543
No 347
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.31 E-value=0.0071 Score=63.94 Aligned_cols=150 Identities=24% Similarity=0.285 Sum_probs=82.3
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhC--CCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEe-chH---HHh--
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIG--IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVV-GSE---LIQ-- 263 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g--~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~-~~~---l~~-- 263 (483)
.|.|-+.+++.|.-.+-- .-+.--.-| +...-+|||+|.|-+.||-|.|.+.+......-.-. ++. |..
T Consensus 302 SI~GH~~vKkAillLLlG---GvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAV 378 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLG---GVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAV 378 (818)
T ss_pred ccccHHHHHHHHHHHHhc---cceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEE
Confidence 478888888887665532 111111111 233445999999999999999999885443211100 000 000
Q ss_pred -hhcCCchHHHH-HHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc------CCc--CCCCeEE
Q 011553 264 -KYLGDGPKLVR-ELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD------GFD--SRGDVKV 333 (483)
Q Consensus 264 -~~~g~~~~~i~-~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~------~~~--~~~~v~v 333 (483)
.-...+++.+. ...-.| ..+|++|||+|++ ++.++ -++-+++.+-. |+. -+.++-|
T Consensus 379 TtD~eTGERRLEAGAMVLA---DRGVVCIDEFDKM--------sDiDR---vAIHEVMEQqtVTIaKAGIHasLNARCSV 444 (818)
T KOG0479|consen 379 TTDQETGERRLEAGAMVLA---DRGVVCIDEFDKM--------SDIDR---VAIHEVMEQQTVTIAKAGIHASLNARCSV 444 (818)
T ss_pred eeccccchhhhhcCceEEc---cCceEEehhcccc--------cchhH---HHHHHHHhcceEEeEeccchhhhccceee
Confidence 00011122211 011112 2369999999999 33332 33455665421 221 1357889
Q ss_pred EEEeCCCC-------------CCChhhcCCCccceEEEcC
Q 011553 334 ILATNRIE-------------SLDPALLRPGRIDRKIEFP 360 (483)
Q Consensus 334 I~ttn~~~-------------~ld~allr~gR~~~~i~~~ 360 (483)
|+++|... .|+..|++ ||+..+.+-
T Consensus 445 lAAANPvyG~Yd~~k~P~eNIgLpDSLLS--RFDLlFv~l 482 (818)
T KOG0479|consen 445 LAAANPVYGQYDQSKTPMENIGLPDSLLS--RFDLLFVVL 482 (818)
T ss_pred eeecCccccccCCCCChhhccCCcHHHHh--hhcEEEEEe
Confidence 99998642 27788999 999755543
No 348
>PRK10536 hypothetical protein; Provisional
Probab=97.31 E-value=0.0021 Score=62.39 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
-++++||+|||||+||.+++.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999984
No 349
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.30 E-value=0.00023 Score=63.41 Aligned_cols=39 Identities=31% Similarity=0.577 Sum_probs=31.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcC
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLG 267 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g 267 (483)
+|+|+|+||+|||++++.+|..++.+++.. ..+.....+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~--d~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDL--DELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEc--hHHHHHHcC
Confidence 389999999999999999999999888754 344444433
No 350
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00067 Score=65.76 Aligned_cols=106 Identities=23% Similarity=0.307 Sum_probs=64.3
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHcCCc--eEEEech-------------------------HHHhhhcCCchHHHH
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSAT--FLRVVGS-------------------------ELIQKYLGDGPKLVR 274 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l~~~--~~~v~~~-------------------------~l~~~~~g~~~~~i~ 274 (483)
+.....+-|+|++||||||++|.+..-.... -+.+.+. ++..+|+.+..+.-+
T Consensus 36 i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 36 IKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred EcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 3445568999999999999999999855421 1112211 122234443333333
Q ss_pred H--HHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCC
Q 011553 275 E--LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (483)
Q Consensus 275 ~--~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~ 340 (483)
+ .+..|-...|.+|+.||.-+.. +...+..++.+|..+.. .-++..++.|+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaL----------DvSiqaqIlnLL~dlq~---~~~lt~lFIsHDL 170 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSAL----------DVSVQAQILNLLKDLQE---ELGLTYLFISHDL 170 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhc----------chhHHHHHHHHHHHHHH---HhCCeEEEEEEEH
Confidence 3 4455555689999999986654 34456666667665532 2356677777653
No 351
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.29 E-value=0.0015 Score=60.24 Aligned_cols=107 Identities=22% Similarity=0.274 Sum_probs=61.8
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCC--ceEEEechHH---------------------------HhhhcCCch--H
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSEL---------------------------IQKYLGDGP--K 271 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~~~~l---------------------------~~~~~g~~~--~ 271 (483)
.+..-+.|.||+|+|||+|++.++..... --+.+++.++ ......... .
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 44555999999999999999999986532 1122222111 001111111 1
Q ss_pred HHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCC
Q 011553 272 LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 342 (483)
Q Consensus 272 ~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ 342 (483)
.-+-.+..+-...|.++++||--. +-+......+.+++.++.. ..+..+|++|+.++.
T Consensus 103 ~qrl~laral~~~p~llllDEP~~----------~LD~~~~~~~~~~l~~~~~---~~~~tiii~sh~~~~ 160 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTS----------HLDIAHQIELLELLRRLAR---ERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcc----------CCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 122334455556789999999743 2345556677777765521 114567888887553
No 352
>PRK00625 shikimate kinase; Provisional
Probab=97.29 E-value=0.00022 Score=65.46 Aligned_cols=31 Identities=35% Similarity=0.463 Sum_probs=28.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEe
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~ 257 (483)
.|+|+|.||||||++++.+|+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999987754
No 353
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.29 E-value=0.0015 Score=67.38 Aligned_cols=104 Identities=20% Similarity=0.315 Sum_probs=59.9
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCC---ceEEEechHHHhhhc-CCchHHHHHHHHHH------------------
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSA---TFLRVVGSELIQKYL-GDGPKLVRELFRVA------------------ 280 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~---~~~~v~~~~l~~~~~-g~~~~~i~~~f~~a------------------ 280 (483)
..+..++|.||.|||||++.+++.+.+.. .++.+..+.+....+ |. ..++..|...
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G--~T~hs~f~i~~~~~~~~~~~~~~~~~~~ 97 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGG--RTIHSFFGIPINNNEKSQCKISKNSRLR 97 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCC--cchHHhcCccccccccccccccccchhh
Confidence 34567999999999999999999887743 344444444433333 21 1222222211
Q ss_pred -hhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCC----cCCCCeEEEEEeCC
Q 011553 281 -DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF----DSRGDVKVILATNR 339 (483)
Q Consensus 281 -~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~----~~~~~v~vI~ttn~ 339 (483)
....-.+|+||||-.+ +......+...|..+..- .+-+++.||+....
T Consensus 98 ~~l~~~~~lIiDEism~-----------~~~~l~~i~~~lr~i~~~~~~~~pFGG~~vil~GDf 150 (364)
T PF05970_consen 98 ERLRKADVLIIDEISMV-----------SADMLDAIDRRLRDIRKSKDSDKPFGGKQVILFGDF 150 (364)
T ss_pred hhhhhheeeecccccch-----------hHHHHHHHHHhhhhhhcccchhhhcCcceEEeehhh
Confidence 1112259999999665 344445555555544432 22356777777654
No 354
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.27 E-value=0.0013 Score=66.13 Aligned_cols=115 Identities=17% Similarity=0.263 Sum_probs=62.3
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---------CCceEEEechH------H---HhhhcCC--------------
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---------SATFLRVVGSE------L---IQKYLGD-------------- 268 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---------~~~~~~v~~~~------l---~~~~~g~-------------- 268 (483)
|+....-+.|+||||||||.|+..+|-.. +...++++..+ + ...+ |.
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~-g~d~~~~l~~i~~~~~ 170 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERF-GVDPDAVLDNILYARA 170 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHc-CCChHHhcCcEEEecC
Confidence 45556668999999999999999877421 34556665433 1 1111 11
Q ss_pred --chHH---HHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEe
Q 011553 269 --GPKL---VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (483)
Q Consensus 269 --~~~~---i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~tt 337 (483)
.+.. +..+........+.+|+||-+-.++...+.. .+.-.+-+..+.+++..+..+....++.||+|.
T Consensus 171 ~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~-~g~~~~r~~~l~~~~~~L~~la~~~~vavvitN 243 (313)
T TIGR02238 171 YTSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG-RGELSERQQKLAQMLSRLNKISEEFNVAVFVTN 243 (313)
T ss_pred CCHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC-ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 1111 1222222233467899999998886543221 111222233455555544444445577777764
No 355
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.26 E-value=0.002 Score=60.51 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=19.5
Q ss_pred CceEEEcCCCCchHHHHHHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVA 246 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia 246 (483)
+.++|+||+|+|||+|.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 356
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.26 E-value=0.0014 Score=63.20 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=28.4
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc----CCceEEEe
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST----SATFLRVV 257 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l----~~~~~~v~ 257 (483)
|+.+..-++|.|+||+|||+++..++... +.+.+.++
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 55666669999999999999998877643 55666665
No 357
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.24 E-value=0.00036 Score=68.69 Aligned_cols=96 Identities=22% Similarity=0.300 Sum_probs=56.8
Q ss_pred CCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc---eEEEe-chHHHh
Q 011553 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT---FLRVV-GSELIQ 263 (483)
Q Consensus 188 ~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~---~~~v~-~~~l~~ 263 (483)
.++++++-.....+.+.+++... +.....+++.||+|||||++++++...+... ++.+. ..++.-
T Consensus 101 ~sle~l~~~~~~~~~~~~~l~~~-----------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l 169 (270)
T PF00437_consen 101 FSLEDLGESGSIPEEIAEFLRSA-----------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRL 169 (270)
T ss_dssp -CHCCCCHTHHCHHHHHHHHHHC-----------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--
T ss_pred ccHhhccCchhhHHHHHHHHhhc-----------cccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceee
Confidence 35556554444445555555431 1234569999999999999999999977543 22221 222211
Q ss_pred hhc-------CCchHHHHHHHHHHhhcCCeEEEEcCCc
Q 011553 264 KYL-------GDGPKLVRELFRVADDLSPSIVFIDEID 294 (483)
Q Consensus 264 ~~~-------g~~~~~i~~~f~~a~~~~p~Il~iDEiD 294 (483)
... .........++..+-+..|++|+++|+-
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 170 PGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred cccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 100 0122345677888888899999999994
No 358
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.24 E-value=0.0013 Score=61.80 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=19.9
Q ss_pred CceEEEcCCCCchHHHHHHHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~ 247 (483)
.-++|+||+|+|||++.++|+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 3499999999999999999993
No 359
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.24 E-value=0.0024 Score=60.80 Aligned_cols=65 Identities=28% Similarity=0.391 Sum_probs=39.1
Q ss_pred HHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccce
Q 011553 276 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDR 355 (483)
Q Consensus 276 ~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~ 355 (483)
.+..|-.+.|.+|+.||=- ..-+.+....++.++.++.. ..+..+|+.|+. +.+-. ++++
T Consensus 152 AIARAL~~~P~iilADEPT----------gnLD~~t~~~V~~ll~~~~~---~~g~tii~VTHd-----~~lA~--~~dr 211 (226)
T COG1136 152 AIARALINNPKIILADEPT----------GNLDSKTAKEVLELLRELNK---ERGKTIIMVTHD-----PELAK--YADR 211 (226)
T ss_pred HHHHHHhcCCCeEEeeCcc----------ccCChHHHHHHHHHHHHHHH---hcCCEEEEEcCC-----HHHHH--hCCE
Confidence 4445555678999999941 22244455666677665522 235667777775 44444 6677
Q ss_pred EEEcC
Q 011553 356 KIEFP 360 (483)
Q Consensus 356 ~i~~~ 360 (483)
+|++.
T Consensus 212 ~i~l~ 216 (226)
T COG1136 212 VIELK 216 (226)
T ss_pred EEEEe
Confidence 77664
No 360
>PRK13949 shikimate kinase; Provisional
Probab=97.24 E-value=0.00027 Score=64.73 Aligned_cols=31 Identities=35% Similarity=0.520 Sum_probs=28.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEe
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~ 257 (483)
.|+|+|+||+|||++++.+|+.++.+|+..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 4899999999999999999999999988755
No 361
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.24 E-value=0.00029 Score=64.75 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=30.5
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEEEechHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l 261 (483)
+-++|.|+||+||||+|+.++..++.+|++++...+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 358999999999999999999999888877655444
No 362
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.23 E-value=0.00027 Score=65.14 Aligned_cols=35 Identities=23% Similarity=0.472 Sum_probs=28.4
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhh
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~ 264 (483)
|+|+|||||||||+|+.+|..++.. .++.++++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHHHH
Confidence 7899999999999999999999854 4555555543
No 363
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.00026 Score=62.24 Aligned_cols=31 Identities=32% Similarity=0.688 Sum_probs=28.2
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEEE
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRV 256 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~v 256 (483)
.+||++|-||||||+++..||..++.+++.+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 4599999999999999999999999888765
No 364
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.23 E-value=0.0029 Score=60.47 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=28.1
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEec
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVG 258 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~ 258 (483)
|++....++|.|+||+|||+++..+|... +.+.++++.
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 45566669999999999999999887542 445555544
No 365
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.22 E-value=0.00027 Score=64.25 Aligned_cols=50 Identities=26% Similarity=0.475 Sum_probs=37.9
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA 280 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a 280 (483)
..++|+|++|+||||+.+++|+.++.+|+.. ..++....| ..+..+|+.-
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~--D~~Ie~~~g---~sI~eIF~~~ 52 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDT--DQEIEKRTG---MSIAEIFEEE 52 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccc--hHHHHHHHC---cCHHHHHHHH
Confidence 4599999999999999999999999999865 444554444 3455556553
No 366
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.22 E-value=0.0014 Score=72.72 Aligned_cols=63 Identities=27% Similarity=0.332 Sum_probs=40.8
Q ss_pred HHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccce
Q 011553 276 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDR 355 (483)
Q Consensus 276 ~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~ 355 (483)
.+..|-...|.|+++||.- +.-+.+..+.+.+.|.++. .+..+|..|+++..+ + ++++
T Consensus 619 alARaLl~~P~ILlLDEaT----------SaLD~~sE~~I~~~L~~~~-----~~~T~I~IaHRl~ti-----~--~adr 676 (709)
T COG2274 619 ALARALLSKPKILLLDEAT----------SALDPETEAIILQNLLQIL-----QGRTVIIIAHRLSTI-----R--SADR 676 (709)
T ss_pred HHHHHhccCCCEEEEeCcc----------cccCHhHHHHHHHHHHHHh-----cCCeEEEEEccchHh-----h--hccE
Confidence 4455555789999999973 3335566677777776653 235677777876543 4 5666
Q ss_pred EEEcC
Q 011553 356 KIEFP 360 (483)
Q Consensus 356 ~i~~~ 360 (483)
++.+.
T Consensus 677 IiVl~ 681 (709)
T COG2274 677 IIVLD 681 (709)
T ss_pred EEEcc
Confidence 66665
No 367
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.22 E-value=0.0064 Score=70.00 Aligned_cols=152 Identities=17% Similarity=0.225 Sum_probs=81.8
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEEEec--hH-----HHh----hh----cCC---------------chHHHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVG--SE-----LIQ----KY----LGD---------------GPKLVRE 275 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~--~~-----l~~----~~----~g~---------------~~~~i~~ 275 (483)
+-++|+||+|.|||+++..++...+ ++.-++. .+ +.. .. .+. ....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 3499999999999999999887665 4433332 11 110 00 010 0112233
Q ss_pred HHHHHhh-cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCC-hhhcCCCcc
Q 011553 276 LFRVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD-PALLRPGRI 353 (483)
Q Consensus 276 ~f~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld-~allr~gR~ 353 (483)
++..... ..|.+|+|||++.+. +......+..++... ..++.+|++|.....++ ..+.-.+.
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~----------~~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~~~- 175 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT----------NPEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVRDQ- 175 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC----------ChHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhcCc-
Confidence 3333322 568899999998872 223445556666543 34566666765422232 12211112
Q ss_pred ceEEEcC----CCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccch
Q 011553 354 DRKIEFP----LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSG 398 (483)
Q Consensus 354 ~~~i~~~----~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~ 398 (483)
.+++. ..+.++-..++...+... + ...++..+...|.|...
T Consensus 176 --~~~l~~~~l~f~~~e~~~ll~~~~~~~-~-~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 176 --LLEIGSQQLAFDHQEAQQFFDQRLSSP-I-EAAESSRLCDDVEGWAT 220 (903)
T ss_pred --ceecCHHhCCCCHHHHHHHHHhccCCC-C-CHHHHHHHHHHhCChHH
Confidence 33444 668888888886554321 1 23345556666666543
No 368
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.22 E-value=0.003 Score=65.36 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=21.9
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l 249 (483)
+..++|+||+|+||||.+..+|..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5669999999999999999998754
No 369
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.21 E-value=0.00083 Score=67.24 Aligned_cols=69 Identities=23% Similarity=0.360 Sum_probs=46.6
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcC-----CceEEE-echHHHhh-------hcCCchHHHHHHHHHHhhcCCeEEEEc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTS-----ATFLRV-VGSELIQK-------YLGDGPKLVRELFRVADDLSPSIVFID 291 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~-----~~~~~v-~~~~l~~~-------~~g~~~~~i~~~f~~a~~~~p~Il~iD 291 (483)
..+++++||+|+|||+++++++..+. ..++.+ +..++.-. ...........++..+.+..|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 46799999999999999999998863 223222 11222110 011112246678888888999999999
Q ss_pred CC
Q 011553 292 EI 293 (483)
Q Consensus 292 Ei 293 (483)
|+
T Consensus 212 Ei 213 (299)
T TIGR02782 212 EV 213 (299)
T ss_pred cc
Confidence 98
No 370
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.21 E-value=0.0033 Score=61.65 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=27.1
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEe
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVV 257 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~ 257 (483)
|+.....++++||||||||++|-.+|... +-+.++++
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45566669999999999999999876532 44444444
No 371
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.20 E-value=0.002 Score=58.94 Aligned_cols=106 Identities=19% Similarity=0.228 Sum_probs=59.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEechH-----HHhh---h---------cCCchHHHHHHHHHHhhcCCeEEEE
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSE-----LIQK---Y---------LGDGPKLVRELFRVADDLSPSIVFI 290 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~~~~-----l~~~---~---------~g~~~~~i~~~f~~a~~~~p~Il~i 290 (483)
+|++|++|+|||++|..++...+.+.+++.... +... . ..+.+..+...+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 689999999999999999988776766664332 1111 0 1122333444443222 4569999
Q ss_pred cCCccccccccCCCCC-ChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC
Q 011553 291 DEIDAVGTKRYDAHSG-GEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (483)
Q Consensus 291 DEiD~l~~~r~~~~~~-~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~ 339 (483)
|-+..+...-.....+ ........+..++..+.. .++.+|+++|.
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~----~~~~~viVsnE 125 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRN----KPGTLILVSNE 125 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHc----CCCcEEEEECC
Confidence 9987775443221111 012233445556665543 24446666774
No 372
>PRK06217 hypothetical protein; Validated
Probab=97.20 E-value=0.00033 Score=64.90 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=27.3
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEe
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~ 257 (483)
|+|.|+||+||||+++++++.++.+++..+
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 899999999999999999999998877653
No 373
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.20 E-value=0.0015 Score=59.93 Aligned_cols=105 Identities=22% Similarity=0.297 Sum_probs=57.7
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh-----h-----------h-cCCchHHHHHHHHHHhhcCCeEEEE
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-----K-----------Y-LGDGPKLVRELFRVADDLSPSIVFI 290 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~-----~-----------~-~g~~~~~i~~~f~~a~~~~p~Il~i 290 (483)
+|+.|+||||||++|..++..++.+++++....... . | .-+.+..+..++... ...+.+|+|
T Consensus 4 ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~VlI 82 (170)
T PRK05800 4 ILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVLV 82 (170)
T ss_pred EEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEEe
Confidence 899999999999999999999887766654332111 0 0 001112233333321 123568999
Q ss_pred cCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC
Q 011553 291 DEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (483)
Q Consensus 291 DEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~ 339 (483)
|-+..+......... .......+.+++..+.. .+..+|+++|.
T Consensus 83 D~Lt~~~~n~l~~~~--~~~~~~~l~~li~~L~~----~~~tvVlVs~E 125 (170)
T PRK05800 83 DCLTTWVTNLLFEEG--EEAIAAEIDALLAALQQ----LPAKIILVTNE 125 (170)
T ss_pred hhHHHHHHHHhcccc--hHHHHHHHHHHHHHHHc----CCCCEEEEEcC
Confidence 998877543211000 12233444555555443 23345666664
No 374
>PRK13948 shikimate kinase; Provisional
Probab=97.19 E-value=0.00067 Score=62.84 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=34.5
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcC
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLG 267 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g 267 (483)
.++..|+|.|.+|||||++++.+|+.++.+|+..+ .+.....|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 34577999999999999999999999999998654 44444444
No 375
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.19 E-value=0.00058 Score=68.78 Aligned_cols=61 Identities=18% Similarity=0.356 Sum_probs=44.9
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhCCCC-CCceEEEcCCCCchHHHHHHHHHHcCC-ceEEEechH
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKP-PKGVILYGEPGTGKTLLAKAVANSTSA-TFLRVVGSE 260 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~-~~gvLL~GppGtGKT~Laraia~~l~~-~~~~v~~~~ 260 (483)
++.|+++++.+|.+++... ..|... .+-++|.||+|+|||+|++.+.+-+.. +++.+..+.
T Consensus 62 ~~~G~~~~i~~lV~~fk~A--------A~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~P 124 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSA--------AQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCP 124 (358)
T ss_pred cccCcHHHHHHHHHHHHHH--------HhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCc
Confidence 7899999999999988763 223322 334889999999999999999987653 444444433
No 376
>PTZ00202 tuzin; Provisional
Probab=97.18 E-value=0.0057 Score=63.43 Aligned_cols=62 Identities=15% Similarity=0.159 Sum_probs=48.1
Q ss_pred CCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEech
Q 011553 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGS 259 (483)
Q Consensus 188 ~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~ 259 (483)
....+++|-+....+|...+... ....+.-+.|+||+|||||+|++.+...++.+.+.++..
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~----------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRL----------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhcc----------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 34567899999999999888531 223344688999999999999999999988766665543
No 377
>PRK14532 adenylate kinase; Provisional
Probab=97.17 E-value=0.00033 Score=64.95 Aligned_cols=37 Identities=24% Similarity=0.454 Sum_probs=29.8
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhh
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 265 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~ 265 (483)
.++|.|||||||||+|+.+|+.++..++ +..+++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~~ 38 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRAA 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHHH
Confidence 3899999999999999999999986654 555555543
No 378
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.17 E-value=0.0025 Score=66.94 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=23.1
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
.|..++|+|++|+|||+++..+|..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46679999999999999999998866
No 379
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.16 E-value=0.00087 Score=70.18 Aligned_cols=94 Identities=16% Similarity=0.245 Sum_probs=62.7
Q ss_pred CCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCc-eEEEcCCCCchHHHHHHHHHHcCCceEEEe--------
Q 011553 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKG-VILYGEPGTGKTLLAKAVANSTSATFLRVV-------- 257 (483)
Q Consensus 187 ~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~g-vLL~GppGtGKT~Laraia~~l~~~~~~v~-------- 257 (483)
..++++++......+.+...+.. |.| +|++||.|+|||+...++.+.++.+...+.
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~~---------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLNR---------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHhC---------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 45788888888888888888766 345 888899999999999999998876443221
Q ss_pred -chHHHhhhcCCc-hHHHHHHHHHHhhcCCeEEEEcCCcc
Q 011553 258 -GSELIQKYLGDG-PKLVRELFRVADDLSPSIVFIDEIDA 295 (483)
Q Consensus 258 -~~~l~~~~~g~~-~~~i~~~f~~a~~~~p~Il~iDEiD~ 295 (483)
-+.+.+.-+... .......++..-.+.|+||++.||-.
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 111111111110 11133455556667899999999943
No 380
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.14 E-value=0.00039 Score=61.95 Aligned_cols=28 Identities=32% Similarity=0.654 Sum_probs=25.0
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
++|+|+||+||||+|+.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876653
No 381
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.14 E-value=0.0021 Score=55.04 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=20.4
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcC
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~ 250 (483)
+++++||+|+|||+++-.++....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHH
Confidence 589999999999998888776553
No 382
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.14 E-value=0.0022 Score=64.84 Aligned_cols=117 Identities=21% Similarity=0.239 Sum_probs=62.0
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---------CCceEEEechHH------Hhh--hcCCc--------------
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---------SATFLRVVGSEL------IQK--YLGDG-------------- 269 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---------~~~~~~v~~~~l------~~~--~~g~~-------------- 269 (483)
|+....-++|+||||||||.++..+|... +...++++..+- ... ..|..
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 45556669999999999999999998653 235566654331 100 00110
Q ss_pred --h---HHHHHHHHHHhh-cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeC
Q 011553 270 --P---KLVRELFRVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (483)
Q Consensus 270 --~---~~i~~~f~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn 338 (483)
. ..+..+...... ..+.+|+||-|-.++....... +...+.++.+.+++..+..+....++.+|+|..
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGR-GNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 0 012222222333 4567999999988754321111 111122333444444443333345777877754
No 383
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.14 E-value=0.00066 Score=62.57 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=23.1
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
+.+.-.|.+.||+|||||+|...+|...
T Consensus 28 ia~ge~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 28 IASGELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcCc
Confidence 3444559999999999999999999744
No 384
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.13 E-value=0.00095 Score=62.00 Aligned_cols=70 Identities=24% Similarity=0.446 Sum_probs=45.1
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHcCC--ceEEEech-HHHhh---h----------cCCchHHHHHHHHHHhhcCCeE
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGS-ELIQK---Y----------LGDGPKLVRELFRVADDLSPSI 287 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~~~-~l~~~---~----------~g~~~~~i~~~f~~a~~~~p~I 287 (483)
....++|.||+|+|||+++++++..... ..+.+... ++... + .+.....+..++..+....|.+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~ 103 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDR 103 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCE
Confidence 3566999999999999999999987642 22222111 11100 0 0111233566777777788999
Q ss_pred EEEcCC
Q 011553 288 VFIDEI 293 (483)
Q Consensus 288 l~iDEi 293 (483)
++++|+
T Consensus 104 i~igEi 109 (186)
T cd01130 104 IIVGEV 109 (186)
T ss_pred EEEEcc
Confidence 999998
No 385
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.002 Score=61.45 Aligned_cols=53 Identities=17% Similarity=0.262 Sum_probs=35.5
Q ss_pred HHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 276 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 276 ~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
.+..|-...|.+|++||.-.. -+...|..++.+|.++.. ..+..+|+.|+...
T Consensus 151 aIARAL~~~PklLIlDEptSa----------LD~siQa~IlnlL~~l~~---~~~lt~l~IsHdl~ 203 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSA----------LDVSVQAQILNLLLELKK---ERGLTYLFISHDLA 203 (252)
T ss_pred HHHHHhccCCCEEEecCchhh----------hcHHHHHHHHHHHHHHHH---hcCceEEEEeCcHH
Confidence 344455567899999997433 355677888888876643 34667888877543
No 386
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.13 E-value=0.0015 Score=67.12 Aligned_cols=68 Identities=25% Similarity=0.320 Sum_probs=45.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcC-----CceEEEe-chHHH-----------hhhcCCchHHHHHHHHHHhhcCCeEEE
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTS-----ATFLRVV-GSELI-----------QKYLGDGPKLVRELFRVADDLSPSIVF 289 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~-----~~~~~v~-~~~l~-----------~~~~g~~~~~i~~~f~~a~~~~p~Il~ 289 (483)
.+|++||+||||||++++++.... ...+.+. ..++. ...+|.........+..+-...|++|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 489999999999999999988763 2334332 12221 111222222345666777778999999
Q ss_pred EcCCc
Q 011553 290 IDEID 294 (483)
Q Consensus 290 iDEiD 294 (483)
++|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99984
No 387
>PRK14531 adenylate kinase; Provisional
Probab=97.12 E-value=0.00048 Score=63.81 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=26.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
.++|+|||||||||+++.+|..++.+++.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 49999999999999999999999877654
No 388
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.12 E-value=0.003 Score=58.55 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=18.2
Q ss_pred eEEEcCCCCchHHHHHHHH
Q 011553 228 VILYGEPGTGKTLLAKAVA 246 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia 246 (483)
++|+||.|+|||++.+.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7899999999999999998
No 389
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.11 E-value=0.0028 Score=59.23 Aligned_cols=106 Identities=22% Similarity=0.258 Sum_probs=60.8
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHc--CC--ceEEEechHH-----H----------hhhc---------------C
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANST--SA--TFLRVVGSEL-----I----------QKYL---------------G 267 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l--~~--~~~~v~~~~l-----~----------~~~~---------------g 267 (483)
+.+...+.|.||+|+|||+|.+.++... .. --+.+++..+ . .-+. .
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~ 111 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRG 111 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhcc
Confidence 3445569999999999999999999876 31 0011111000 0 0000 0
Q ss_pred Cc-hHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 268 DG-PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 268 ~~-~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
-+ ...-+-.+..|-...|.++++||-.. +-+......+.+++.++.. . +..+|++|+.+.
T Consensus 112 LS~G~~qrv~laral~~~p~illlDEP~~----------~LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~~~ 172 (194)
T cd03213 112 LSGGERKRVSIALELVSNPSLLFLDEPTS----------GLDSSSALQVMSLLRRLAD---T-GRTIICSIHQPS 172 (194)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCc----------CCCHHHHHHHHHHHHHHHh---C-CCEEEEEecCch
Confidence 01 11112234444456788999999743 3355667777777776532 2 456777777654
No 390
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.11 E-value=0.00068 Score=63.45 Aligned_cols=133 Identities=22% Similarity=0.296 Sum_probs=59.2
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhh-cCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCC
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY-LGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSG 306 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~-~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~ 306 (483)
++|+||+|||||.+|-++|+.++.+++..+.-...... +|........ +. .. .=++|||-.- ..
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~e-l~----~~-~RiyL~~r~l---------~~ 68 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSE-LK----GT-RRIYLDDRPL---------SD 68 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGG-GT----T--EEEES----G---------GG
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHH-Hc----cc-ceeeeccccc---------cC
Confidence 78999999999999999999999999998876554322 2222111111 11 11 2377776421 12
Q ss_pred ChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhc-----CCCccceEEEcCCCCHHHHHHHHHHHHcCC
Q 011553 307 GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALL-----RPGRIDRKIEFPLPDIKTRRRIFQIHTSRM 378 (483)
Q Consensus 307 ~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~all-----r~gR~~~~i~~~~P~~~~r~~Il~~~~~~~ 378 (483)
+.-........|+..+......+. +|+-.-+.+.+..-.. .+.+. .+..++.|+.+.-..-.....++|
T Consensus 69 G~i~a~ea~~~Li~~v~~~~~~~~--~IlEGGSISLl~~m~~~~~w~~~f~w-~i~rl~l~d~~~f~~ra~~Rv~~M 142 (233)
T PF01745_consen 69 GIINAEEAHERLISEVNSYSAHGG--LILEGGSISLLNCMAQDPYWSLDFRW-HIRRLRLPDEEVFMARAKRRVRQM 142 (233)
T ss_dssp -S--HHHHHHHHHHHHHTTTTSSE--EEEEE--HHHHHHHHH-TTTSSSSEE-EEEE-----HHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhccccCc--eEEeCchHHHHHHHHhcccccCCCeE-EEEEEECCChHHHHHHHHHHHHHh
Confidence 223333444455555555544333 3333322222211111 11122 366778888887666555444444
No 391
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.11 E-value=0.0024 Score=71.05 Aligned_cols=117 Identities=20% Similarity=0.288 Sum_probs=61.8
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHH---HcCCceEEEechHHHh----hhcC------------CchHHHHHHHHHHh
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVAN---STSATFLRVVGSELIQ----KYLG------------DGPKLVRELFRVAD 281 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~---~l~~~~~~v~~~~l~~----~~~g------------~~~~~i~~~f~~a~ 281 (483)
|+.....++|+||||||||+|+..++. ..+...++++..+-+. ...| ..+..+..+-....
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 455666699999999999999976544 2344555555433211 0011 11222222223334
Q ss_pred hcCCeEEEEcCCcccccc-ccCCCCC-ChHHHH-HHHHHHHHhccCCcCCCCeEEEEEe
Q 011553 282 DLSPSIVFIDEIDAVGTK-RYDAHSG-GEREIQ-RTMLELLNQLDGFDSRGDVKVILAT 337 (483)
Q Consensus 282 ~~~p~Il~iDEiD~l~~~-r~~~~~~-~~~~~~-~~l~~lL~~l~~~~~~~~v~vI~tt 337 (483)
...+.+|+||-+..+.+. ..+...+ .....+ +.+.+.|..+..+-...++.+|+|-
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred cCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 457899999999998752 2221111 111222 2223444433333334567777773
No 392
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.10 E-value=0.0022 Score=64.58 Aligned_cols=73 Identities=19% Similarity=0.360 Sum_probs=47.1
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHcCC--ceEEEe-chHHHhh------------hcCCchHHHHHHHHHHhhcCCe
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVV-GSELIQK------------YLGDGPKLVRELFRVADDLSPS 286 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~-~~~l~~~------------~~g~~~~~i~~~f~~a~~~~p~ 286 (483)
+....++++.||+|+|||+++++++..+.. ..+.+. ..++.-. ..+...-.+..++..+....|.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 445678999999999999999999987643 122221 1111100 0011122356677777788999
Q ss_pred EEEEcCCc
Q 011553 287 IVFIDEID 294 (483)
Q Consensus 287 Il~iDEiD 294 (483)
+|++||+-
T Consensus 221 ~ii~gE~r 228 (308)
T TIGR02788 221 RIILGELR 228 (308)
T ss_pred eEEEeccC
Confidence 99999983
No 393
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.00076 Score=62.25 Aligned_cols=33 Identities=27% Similarity=0.572 Sum_probs=26.4
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
|+|.||||+||||+|+.+|+.++. ..++..++.
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~i--~hlstgd~~ 35 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLGL--PHLDTGDIL 35 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC--cEEcHhHHh
Confidence 899999999999999999999554 445544444
No 394
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.10 E-value=0.0024 Score=58.47 Aligned_cols=105 Identities=23% Similarity=0.274 Sum_probs=60.8
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCC--ceEEEechHH-------Hh----------hhcC--------Cc-hHHHH
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSEL-------IQ----------KYLG--------DG-PKLVR 274 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~~~~l-------~~----------~~~g--------~~-~~~i~ 274 (483)
.+...+.|.||+|+|||+|++.++..... --+.+++..+ .. -+.+ -+ ...-+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qr 103 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQR 103 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHH
Confidence 34445999999999999999999985421 1111111100 00 0011 01 11122
Q ss_pred HHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 275 ELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 275 ~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
-.+..+-...|.++++||-..- -+......+.+++..+.. . +..+|++|+.++
T Consensus 104 v~laral~~~p~illlDEPt~~----------LD~~~~~~l~~~l~~~~~---~-g~tiii~th~~~ 156 (173)
T cd03230 104 LALAQALLHDPELLILDEPTSG----------LDPESRREFWELLRELKK---E-GKTILLSSHILE 156 (173)
T ss_pred HHHHHHHHcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHHH---C-CCEEEEECCCHH
Confidence 3455556678999999997433 355666777777776532 2 355777777654
No 395
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.10 E-value=0.00043 Score=62.60 Aligned_cols=28 Identities=36% Similarity=0.653 Sum_probs=24.7
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
++|+||||||||++++.++..++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999876653
No 396
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.10 E-value=0.0015 Score=66.43 Aligned_cols=116 Identities=19% Similarity=0.251 Sum_probs=62.5
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---------CCceEEEechH------HHh--hhcCCc--------------
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---------SATFLRVVGSE------LIQ--KYLGDG-------------- 269 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---------~~~~~~v~~~~------l~~--~~~g~~-------------- 269 (483)
|+....-+.|+||||||||.|+..+|-.. +...++++..+ +.. ...|-.
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 45555558899999999999999887322 23556665432 111 001110
Q ss_pred --hH---HHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEe
Q 011553 270 --PK---LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (483)
Q Consensus 270 --~~---~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~tt 337 (483)
+. .+..+........+.+|+||-|-.++...+... +.-.+.++.+.+++..+..+....++.||+|.
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~r-g~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGR-GELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCc-cchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 11 112222223345678999999988765432221 11223344455555544444344567777774
No 397
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.09 E-value=0.00047 Score=60.78 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=27.8
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEe
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~ 257 (483)
++|.|+||||||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999988765
No 398
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.09 E-value=0.0014 Score=66.44 Aligned_cols=71 Identities=23% Similarity=0.377 Sum_probs=47.9
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHcCC--ceEEE-echHHHh-----------hh--cCCchHHHHHHHHHHhhcCCeE
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRV-VGSELIQ-----------KY--LGDGPKLVRELFRVADDLSPSI 287 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v-~~~~l~~-----------~~--~g~~~~~i~~~f~~a~~~~p~I 287 (483)
...+++++|++|||||+++++++..... .++.+ +..++.- .. .+...-...+++..+....|..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 4567999999999999999999997763 22222 1112211 00 1122224567888888899999
Q ss_pred EEEcCCc
Q 011553 288 VFIDEID 294 (483)
Q Consensus 288 l~iDEiD 294 (483)
|++.|+-
T Consensus 239 IivGEiR 245 (332)
T PRK13900 239 IIVGELR 245 (332)
T ss_pred EEEEecC
Confidence 9999983
No 399
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.08 E-value=0.0014 Score=69.86 Aligned_cols=94 Identities=19% Similarity=0.231 Sum_probs=60.8
Q ss_pred CCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCc-eEEEcCCCCchHHHHHHHHHHcCC---ceEEEe-chH
Q 011553 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKG-VILYGEPGTGKTLLAKAVANSTSA---TFLRVV-GSE 260 (483)
Q Consensus 186 ~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~g-vLL~GppGtGKT~Laraia~~l~~---~~~~v~-~~~ 260 (483)
...++++++-.+++.+.+...+.. +.| ++++||+|+||||+.+++.+.+.. .++.+. ..+
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~~---------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE 281 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIRR---------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVE 281 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCee
Confidence 345788887677777778776654 344 789999999999999988877653 333331 111
Q ss_pred HH-----hhhcCC-chHHHHHHHHHHhhcCCeEEEEcCCc
Q 011553 261 LI-----QKYLGD-GPKLVRELFRVADDLSPSIVFIDEID 294 (483)
Q Consensus 261 l~-----~~~~g~-~~~~i~~~f~~a~~~~p~Il~iDEiD 294 (483)
+. +..+.. ........+..+-...|+||++.|+-
T Consensus 282 ~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 282 YQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred eecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 11 111111 11234455666677899999999984
No 400
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.08 E-value=0.0007 Score=64.84 Aligned_cols=20 Identities=35% Similarity=0.615 Sum_probs=18.6
Q ss_pred eEEEcCCCCchHHHHHHHHH
Q 011553 228 VILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~ 247 (483)
+.|.||+||||||+.+.|-.
T Consensus 30 ~vliGpSGsGKTTtLkMINr 49 (309)
T COG1125 30 LVLIGPSGSGKTTTLKMINR 49 (309)
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 88999999999999999876
No 401
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.07 E-value=0.00048 Score=63.93 Aligned_cols=35 Identities=26% Similarity=0.536 Sum_probs=28.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhh
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~ 264 (483)
|+|+||||||||++|+.+|..++..++ +..+++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l~~~ 36 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDLLRE 36 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHHHHH
Confidence 799999999999999999999886654 45555443
No 402
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.07 E-value=0.0035 Score=59.96 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=20.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~ 247 (483)
..-++|.||+|+|||++.+.++.
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999987
No 403
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.07 E-value=0.0033 Score=58.79 Aligned_cols=128 Identities=24% Similarity=0.374 Sum_probs=74.9
Q ss_pred CCCChhhhhhhCCCCCCc--eEEEcCCCCchHHHHHHHHHHc---CCceEEEech----HHHh-----------------
Q 011553 210 PLTHPELYEDIGIKPPKG--VILYGEPGTGKTLLAKAVANST---SATFLRVVGS----ELIQ----------------- 263 (483)
Q Consensus 210 pl~~~~~~~~~g~~~~~g--vLL~GppGtGKT~Laraia~~l---~~~~~~v~~~----~l~~----------------- 263 (483)
...+.++-.++|-..|.| +++-|+.|||||.|++.+|--. +.....++.. +++.
T Consensus 11 ~~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~ 90 (235)
T COG2874 11 KSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGR 90 (235)
T ss_pred cCCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcce
Confidence 466777788887544544 8889999999999999988521 1111111110 0000
Q ss_pred -----------hh-cCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCe
Q 011553 264 -----------KY-LGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDV 331 (483)
Q Consensus 264 -----------~~-~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v 331 (483)
.| .......+..+.+..+.....||+||-+..++... -....++++..+..+.+.+++
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~----------~~~~vl~fm~~~r~l~d~gKv 160 (235)
T COG2874 91 LLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD----------SEDAVLNFMTFLRKLSDLGKV 160 (235)
T ss_pred eEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc----------cHHHHHHHHHHHHHHHhCCCE
Confidence 00 01122344555555555566899999998875321 123456666666666555554
Q ss_pred EEEEEeCCCCCCChhhcC
Q 011553 332 KVILATNRIESLDPALLR 349 (483)
Q Consensus 332 ~vI~ttn~~~~ld~allr 349 (483)
|..|-+|..++++++.
T Consensus 161 --IilTvhp~~l~e~~~~ 176 (235)
T COG2874 161 --IILTVHPSALDEDVLT 176 (235)
T ss_pred --EEEEeChhhcCHHHHH
Confidence 3334457788887665
No 404
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.07 E-value=0.0019 Score=66.44 Aligned_cols=112 Identities=11% Similarity=0.258 Sum_probs=59.9
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCc------eEEEech------HHHhhh--------cCCchHH----HHHHHHHHh
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSAT------FLRVVGS------ELIQKY--------LGDGPKL----VRELFRVAD 281 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~------~~~v~~~------~l~~~~--------~g~~~~~----i~~~f~~a~ 281 (483)
.-++|+||||+|||+|++.+++..... ++.+... ++.... .+..+.. ...+...|.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae 248 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAK 248 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHH
Confidence 339999999999999999999976432 2222211 111111 1222211 112222222
Q ss_pred h----cCCeEEEEcCCcccccccc-------CC-CCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEe
Q 011553 282 D----LSPSIVFIDEIDAVGTKRY-------DA-HSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (483)
Q Consensus 282 ~----~~p~Il~iDEiD~l~~~r~-------~~-~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~tt 337 (483)
. ....||||||+..++.... .. ..+.+......+-.++..-......+.+.+|+|.
T Consensus 249 ~~~~~GkdVVLlIDEitR~arAqrei~~~~G~~~s~G~~~~~~~~~~~~~~~a~~~~~~GSiT~~~Tv 316 (415)
T TIGR00767 249 RLVEHKKDVVILLDSITRLARAYNTVTPASGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATA 316 (415)
T ss_pred HHHHcCCCeEEEEEChhHHHHHHHHhHhhcCCCCCCCcChhhhcccHHHHhhcCCCCCCcchhheEEE
Confidence 2 2346999999998753221 11 1233444444455666554444445566666665
No 405
>PRK14530 adenylate kinase; Provisional
Probab=97.07 E-value=0.00057 Score=64.97 Aligned_cols=35 Identities=20% Similarity=0.450 Sum_probs=28.7
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~ 263 (483)
.|+|.||||+||||+++.+|..++.+++. ..+++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~--~g~~lr 39 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVT--TGDALR 39 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe--ccHHHH
Confidence 49999999999999999999999877664 344443
No 406
>PRK05973 replicative DNA helicase; Provisional
Probab=97.06 E-value=0.0037 Score=60.22 Aligned_cols=38 Identities=34% Similarity=0.361 Sum_probs=28.0
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEec
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVG 258 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~ 258 (483)
|+.+...++|.|+||+|||+++-.++... |.+.++++.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 45666669999999999999988877643 555555543
No 407
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0032 Score=64.28 Aligned_cols=98 Identities=24% Similarity=0.424 Sum_probs=66.8
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHcC--CceEEEechHHHh------hhcCC--------chHHHHHHHHHHhhcCC
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANSTS--ATFLRVVGSELIQ------KYLGD--------GPKLVRELFRVADDLSP 285 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l~--~~~~~v~~~~l~~------~~~g~--------~~~~i~~~f~~a~~~~p 285 (483)
+-+..-+||-|.||.|||||.-.+|..+. .+.+++++.+-.. .-.|. .+..+.+++......+|
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p 169 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKP 169 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCC
Confidence 34555588999999999999888887664 2688888765332 22221 24457788888888999
Q ss_pred eEEEEcCCccccccccCCCCCChHHHHHHHHHHH
Q 011553 286 SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELL 319 (483)
Q Consensus 286 ~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL 319 (483)
.+++||-|..+.....++..+.-......-.+|+
T Consensus 170 ~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~ 203 (456)
T COG1066 170 DLVVIDSIQTLYSEEITSAPGSVSQVREVAAELM 203 (456)
T ss_pred CEEEEeccceeecccccCCCCcHHHHHHHHHHHH
Confidence 9999999999876654444444333333333444
No 408
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.05 E-value=0.0026 Score=57.65 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.2
Q ss_pred CCceEEEcCCCCchHHHHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~ 247 (483)
++..+++||.|+|||++.++++-
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999864
No 409
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.04 E-value=0.0022 Score=59.28 Aligned_cols=105 Identities=18% Similarity=0.265 Sum_probs=59.4
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCC--ceEEEechHH--------Hh---hhcC------------CchHH-----
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSEL--------IQ---KYLG------------DGPKL----- 272 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~~~~l--------~~---~~~g------------~~~~~----- 272 (483)
.+...+.|.||+|+|||+|.+.++..... --+.+++..+ .. .|+. .....
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~ 103 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSS 103 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHh
Confidence 44555899999999999999999985431 1111111000 00 0000 00011
Q ss_pred -------HHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 273 -------VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 273 -------i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
-+-.+..|-...|.++++||--. +-+......+.+++..+.. .+..+|++|+..+
T Consensus 104 ~LS~G~~qrl~la~al~~~p~llllDEP~~----------~LD~~~~~~l~~~l~~~~~----~~~tiii~sh~~~ 165 (182)
T cd03215 104 LLSGGNQQKVVLARWLARDPRVLILDEPTR----------GVDVGAKAEIYRLIRELAD----AGKAVLLISSELD 165 (182)
T ss_pred hcCHHHHHHHHHHHHHccCCCEEEECCCCc----------CCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHH
Confidence 11234444456789999999743 3355666777777776532 2456788877654
No 410
>PRK14974 cell division protein FtsY; Provisional
Probab=97.03 E-value=0.0047 Score=62.68 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l 249 (483)
|.-++|+||||+||||++..+|..+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5669999999999999888888754
No 411
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.03 E-value=0.0025 Score=59.48 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=23.0
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
.+..-+.|.||+|+|||+|+++++...
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 445559999999999999999999854
No 412
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.0023 Score=65.71 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.2
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
....++|+||+|+||||++..+|..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34569999999999999999999753
No 413
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.0013 Score=61.09 Aligned_cols=23 Identities=48% Similarity=0.741 Sum_probs=21.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHcC
Q 011553 228 VILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~ 250 (483)
++|+|+||+|||++|+-+|+.+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 78999999999999999999875
No 414
>PRK04328 hypothetical protein; Provisional
Probab=97.02 E-value=0.0068 Score=59.05 Aligned_cols=28 Identities=36% Similarity=0.615 Sum_probs=22.9
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHH
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~ 248 (483)
|++....+|++||||||||+|+..++.+
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4666677999999999999998876643
No 415
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.01 E-value=0.00071 Score=65.02 Aligned_cols=37 Identities=22% Similarity=0.578 Sum_probs=29.9
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~ 263 (483)
+..++|.||||+||||+|+.+|+.++.+++. ..+++.
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is--~gdllr 42 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHIN--MGNILR 42 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEE--CChHHH
Confidence 3449999999999999999999999877655 445544
No 416
>PTZ00035 Rad51 protein; Provisional
Probab=97.01 E-value=0.0039 Score=63.44 Aligned_cols=115 Identities=19% Similarity=0.259 Sum_probs=62.1
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---------CCceEEEechHH---------HhhhcCC--------------
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---------SATFLRVVGSEL---------IQKYLGD-------------- 268 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---------~~~~~~v~~~~l---------~~~~~g~-------------- 268 (483)
|+....-+.|+||||||||+|+..+|... +...++++..+. ...+ +-
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~-g~~~~~~l~nI~~~~~ 192 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERF-GLDPEDVLDNIAYARA 192 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHh-CCChHhHhhceEEEcc
Confidence 45556668899999999999999887532 234445544321 1110 10
Q ss_pred --chHH---HHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEe
Q 011553 269 --GPKL---VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (483)
Q Consensus 269 --~~~~---i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~tt 337 (483)
.+.. +..+........+.+|+||-|-.++...+... +...+-++.+.+++..+..+....++.||+|.
T Consensus 193 ~~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~vavvvtN 265 (337)
T PTZ00035 193 YNHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGR-GELAERQQHLGKFLRALQKLADEFNVAVVITN 265 (337)
T ss_pred CCHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCc-ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEec
Confidence 0111 11122222234678999999988764322111 11222344455555555444344577777663
No 417
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.01 E-value=0.0035 Score=63.07 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=29.2
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---------CCceEEEechH
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---------SATFLRVVGSE 260 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---------~~~~~~v~~~~ 260 (483)
|+....-++|+||||||||+++..+|... +...++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 45555668999999999999999998653 22566665433
No 418
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.99 E-value=0.0011 Score=66.15 Aligned_cols=55 Identities=31% Similarity=0.485 Sum_probs=37.6
Q ss_pred HHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCC
Q 011553 277 FRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (483)
Q Consensus 277 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld 344 (483)
+..|-.+.|.++|+||- .++-+......+.+++..+.. .++..|+++|+.++.+.
T Consensus 147 ia~aL~~~P~lliLDEP----------t~GLDp~~~~~~~~~l~~l~~---~g~~tvlissH~l~e~~ 201 (293)
T COG1131 147 IALALLHDPELLILDEP----------TSGLDPESRREIWELLRELAK---EGGVTILLSTHILEEAE 201 (293)
T ss_pred HHHHHhcCCCEEEECCC----------CcCCCHHHHHHHHHHHHHHHh---CCCcEEEEeCCcHHHHH
Confidence 34444567899999995 345566677777777776542 34478999998866543
No 419
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.99 E-value=0.00074 Score=61.97 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=29.8
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEec
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~ 258 (483)
...|+|.|++|+|||++++.+|..++.+|+..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3459999999999999999999999999876653
No 420
>PRK06547 hypothetical protein; Provisional
Probab=96.98 E-value=0.00072 Score=62.04 Aligned_cols=33 Identities=33% Similarity=0.442 Sum_probs=28.2
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHcCCceEEE
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANSTSATFLRV 256 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v 256 (483)
.+.-|+|.|++|||||++++.+++.++.+++..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 345588999999999999999999998877654
No 421
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.98 E-value=0.00077 Score=61.45 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=27.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEE
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRV 256 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v 256 (483)
.++|+|++|||||++++.+|..++.+|+..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 489999999999999999999999998754
No 422
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.96 E-value=0.0025 Score=64.30 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=46.2
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcC-----CceEEEe-chHHHhh------hcCCchHHHHHHHHHHhhcCCeEEEEcC
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTS-----ATFLRVV-GSELIQK------YLGDGPKLVRELFRVADDLSPSIVFIDE 292 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~-----~~~~~v~-~~~l~~~------~~g~~~~~i~~~f~~a~~~~p~Il~iDE 292 (483)
..+++++|++|||||+++++++.... ..++.+- ..++.-. +..........++..+-+..|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 56799999999999999999998762 2223221 2222210 0011122356777888889999999999
Q ss_pred C
Q 011553 293 I 293 (483)
Q Consensus 293 i 293 (483)
+
T Consensus 224 i 224 (323)
T PRK13833 224 V 224 (323)
T ss_pred c
Confidence 8
No 423
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.96 E-value=0.003 Score=63.68 Aligned_cols=115 Identities=18% Similarity=0.265 Sum_probs=62.0
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc------C---CceEEEechHH---------HhhhcCCc-------------
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST------S---ATFLRVVGSEL---------IQKYLGDG------------- 269 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l------~---~~~~~v~~~~l---------~~~~~g~~------------- 269 (483)
|+.+..-+.|+||||+|||+|+..+|... + ...++++..+. ... .+..
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~-~~~~~~~~l~~i~~~~~ 170 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAER-YGLNPEDVLDNVAYARA 170 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHH-cCCChHHhhccEEEEec
Confidence 45555668999999999999999888522 1 24455554331 111 0111
Q ss_pred ---hH---HHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEe
Q 011553 270 ---PK---LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (483)
Q Consensus 270 ---~~---~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~tt 337 (483)
.. .+..+........+.+|+||-|-.++....... +.-...+..|.+++..+..+....++.||+|.
T Consensus 171 ~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~-~~~~~rq~~l~~~~~~L~~la~~~~vavv~tN 243 (316)
T TIGR02239 171 YNTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGR-GELSARQMHLARFLRSLQRLADEFGVAVVITN 243 (316)
T ss_pred CChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCc-chHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 11 112222222334678999999988764322111 11112234455555555444445577777774
No 424
>PRK13946 shikimate kinase; Provisional
Probab=96.96 E-value=0.00071 Score=62.74 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=29.9
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEe
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~ 257 (483)
++.|+|+|.+|||||++++.+|+.++.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 456999999999999999999999999988655
No 425
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.96 E-value=0.00071 Score=60.41 Aligned_cols=28 Identities=29% Similarity=0.564 Sum_probs=26.0
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
|-+.|||||||||+++.+|..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6688999999999999999999999875
No 426
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.95 E-value=0.0096 Score=61.83 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=21.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l 249 (483)
+..++|.||+|+||||++..+|...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4558899999999999999999754
No 427
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.95 E-value=0.0036 Score=58.78 Aligned_cols=106 Identities=24% Similarity=0.280 Sum_probs=60.7
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHc--C--CceEEEechHH-------------------------------Hhhhc
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANST--S--ATFLRVVGSEL-------------------------------IQKYL 266 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l--~--~~~~~v~~~~l-------------------------------~~~~~ 266 (483)
+.+...+.|.||+|+|||+|.++++... . .--+.+++..+ ...+.
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~ 102 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVN 102 (200)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhcc
Confidence 3445569999999999999999999863 1 11122211110 00111
Q ss_pred CCch--HHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 267 GDGP--KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 267 g~~~--~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
.... ..-+-.+..+-...|.++++||-- ++-+......+.++|..+.. ....+|++|+.++
T Consensus 103 ~~LS~G~~qrv~laral~~~p~illlDEPt----------~~LD~~~~~~l~~~L~~~~~----~~~tiii~sh~~~ 165 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPD----------SGLDIDALRLVAEVINKLRE----EGKSVLIITHYQR 165 (200)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCC----------ccCCHHHHHHHHHHHHHHHH----CCCEEEEEecCHH
Confidence 1111 112223444555678999999963 23355566777777766521 1356777887755
No 428
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.95 E-value=0.0031 Score=56.34 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=28.8
Q ss_pred eEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHH
Q 011553 228 VILYGEPGTGKTLLAKAVANST---SATFLRVVGSELI 262 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~ 262 (483)
++|+|+||+|||++++.++..+ +...+.++...+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 7899999999999999999988 5566667665554
No 429
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.95 E-value=0.0033 Score=63.13 Aligned_cols=138 Identities=23% Similarity=0.318 Sum_probs=78.8
Q ss_pred ccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHH
Q 011553 195 GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVR 274 (483)
Q Consensus 195 Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~ 274 (483)
|-.+.+.-+.+++...+... ....+.++|+|+.|+|||++.+.|..-+|.....+..+..... .+...
T Consensus 53 ~d~~~~~~l~~~lg~~L~~~-------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~-~~~~~---- 120 (304)
T TIGR01613 53 GDNELIEYLQRVIGYSLTGN-------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNE-FQEHR---- 120 (304)
T ss_pred CCHHHHHHHHHHHhHHhcCC-------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhh-ccCCC----
Confidence 34456777777776654432 2345569999999999999999999888865544333332222 11111
Q ss_pred HHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHh--c-------cCCcCCCCeEEEEEeCCCCCC--
Q 011553 275 ELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQ--L-------DGFDSRGDVKVILATNRIESL-- 343 (483)
Q Consensus 275 ~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~--l-------~~~~~~~~v~vI~ttn~~~~l-- 343 (483)
|..+......+++.||++.-. . .....+..+... + +.+.-.....+|++||..-.+
T Consensus 121 --f~~a~l~gk~l~~~~E~~~~~--~---------~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~ 187 (304)
T TIGR01613 121 --FGLARLEGKRAVIGDEVQKGY--R---------DDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRG 187 (304)
T ss_pred --chhhhhcCCEEEEecCCCCCc--c---------ccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCC
Confidence 333333344689999985320 0 011233333320 0 011112247788899884443
Q ss_pred -ChhhcCCCccceEEEcC
Q 011553 344 -DPALLRPGRIDRKIEFP 360 (483)
Q Consensus 344 -d~allr~gR~~~~i~~~ 360 (483)
+.++.| |+ .+|.|+
T Consensus 188 ~~~a~~R--R~-~vi~f~ 202 (304)
T TIGR01613 188 FDGGIKR--RL-RIIPFT 202 (304)
T ss_pred CChhhee--eE-EEEecc
Confidence 467888 87 377765
No 430
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.94 E-value=0.0034 Score=61.22 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=23.5
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
+.+...+.|.||+|+|||||++.|+..+
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445569999999999999999999753
No 431
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.94 E-value=0.0044 Score=67.99 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=23.7
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
+++...+.|+||+|+|||||++.++...
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455559999999999999999999864
No 432
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.94 E-value=0.0063 Score=56.72 Aligned_cols=105 Identities=23% Similarity=0.298 Sum_probs=59.1
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc----CCceEEEechHH----Hh----------hhcC---------------Cc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST----SATFLRVVGSEL----IQ----------KYLG---------------DG 269 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l----~~~~~~v~~~~l----~~----------~~~g---------------~~ 269 (483)
.+...+.|.||+|+|||+|++.++... ..--+.+++..+ .. -+.+ -+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LS 110 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLS 110 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhcCC
Confidence 444558999999999999999999632 111111111110 00 0000 00
Q ss_pred h-HHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 270 P-KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 270 ~-~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
. ..-+-.+..|-...|.++++||-.. +-+......+.+++.++.. .+..+|++|+.++
T Consensus 111 gGe~qrv~la~al~~~p~vlllDEP~~----------~LD~~~~~~l~~~l~~~~~----~~~tiiivtH~~~ 169 (192)
T cd03232 111 VEQRKRLTIGVELAAKPSILFLDEPTS----------GLDSQAAYNIVRFLKKLAD----SGQAILCTIHQPS 169 (192)
T ss_pred HHHhHHHHHHHHHhcCCcEEEEeCCCc----------CCCHHHHHHHHHHHHHHHH----cCCEEEEEEcCCh
Confidence 0 1112233444455789999999743 3355666777777776532 2456788887654
No 433
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.94 E-value=0.011 Score=55.37 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=27.6
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEEEechHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l 261 (483)
.-++++|+||+|||++|+.+|.+++..+ +..+++
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~--~~~~D~ 37 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI--VLSGDY 37 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE--EehhHH
Confidence 3489999999999999999999988755 344443
No 434
>PLN02200 adenylate kinase family protein
Probab=96.93 E-value=0.00092 Score=64.52 Aligned_cols=41 Identities=20% Similarity=0.403 Sum_probs=32.6
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhh
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 265 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~ 265 (483)
..+.-++|.||||||||++|+.+|..++.+ .+++++++...
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~~ 81 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRRE 81 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHHH
Confidence 345568999999999999999999999865 56677776543
No 435
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.93 E-value=0.0071 Score=57.83 Aligned_cols=64 Identities=22% Similarity=0.336 Sum_probs=41.0
Q ss_pred HHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcC
Q 011553 274 RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLR 349 (483)
Q Consensus 274 ~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr 349 (483)
+-+|..|--..|-++++||-- ++-+......+++.+.++-.. .+...+|+.|+..+.+++-+-+
T Consensus 179 rvLiaRALv~~P~LLiLDEP~----------~GLDl~~re~ll~~l~~~~~~--~~~~~ll~VtHh~eEi~~~~th 242 (257)
T COG1119 179 RVLIARALVKDPELLILDEPA----------QGLDLIAREQLLNRLEELAAS--PGAPALLFVTHHAEEIPPCFTH 242 (257)
T ss_pred HHHHHHHHhcCCCEEEecCcc----------ccCChHHHHHHHHHHHHHhcC--CCCceEEEEEcchhhcccccce
Confidence 346666767789999999962 222333445666666655432 2345678888998888876543
No 436
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0043 Score=56.97 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=34.0
Q ss_pred CeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcC
Q 011553 285 PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLR 349 (483)
Q Consensus 285 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr 349 (483)
..+.++||-..-. +.+....|..++.+-- ..+-+||+||+.+-.++++-.+
T Consensus 149 ~pLWiLDEP~taL----------Dk~g~a~l~~l~~~H~----~~GGiVllttHq~l~~~~a~~~ 199 (209)
T COG4133 149 APLWILDEPFTAL----------DKEGVALLTALMAAHA----AQGGIVLLTTHQPLPIASAQIR 199 (209)
T ss_pred CCceeecCccccc----------CHHHHHHHHHHHHHHh----cCCCEEEEecCCccCCCccceE
Confidence 3489999975432 4445566667766422 3456789999998888777655
No 437
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.93 E-value=0.011 Score=56.48 Aligned_cols=37 Identities=35% Similarity=0.442 Sum_probs=27.2
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHH---cCCceEEEe
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANS---TSATFLRVV 257 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~---l~~~~~~v~ 257 (483)
|+.....++|+||||||||+++..++.. .+.+.+.++
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 5666777999999999999999987643 233444444
No 438
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.92 E-value=0.0027 Score=58.39 Aligned_cols=107 Identities=21% Similarity=0.338 Sum_probs=61.4
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCC--ceEEEechHH---------Hh-----------hhcC----------Cc-
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSEL---------IQ-----------KYLG----------DG- 269 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~~~~l---------~~-----------~~~g----------~~- 269 (483)
.+...+.|.||+|+|||+|+++++..... --+.+++..+ .. -+.+ -+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~ 103 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSG 103 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCH
Confidence 34445889999999999999999975431 0111111100 00 0000 00
Q ss_pred hHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCC
Q 011553 270 PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 342 (483)
Q Consensus 270 ~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ 342 (483)
...-+-.+..+-...|.++++||-. ++-+......+.+++.++.. ..+..+|++|+.++.
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~----------~~LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~~ 163 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPT----------SALDPITRREVRALLKSLQA---QLGITVVLVTHDLDE 163 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 1122334555566688999999963 33356667777777776532 223567777776543
No 439
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.92 E-value=0.0028 Score=59.78 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=22.9
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
.....+.|.||+|+|||||++.++...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445558999999999999999999853
No 440
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.92 E-value=0.00087 Score=61.81 Aligned_cols=35 Identities=20% Similarity=0.425 Sum_probs=28.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~ 263 (483)
-++|.|||||||||+++.++..++.. .++..++..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~--~~~~g~~~~ 39 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFT--HLSTGDLLR 39 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc--EEeHHHHHH
Confidence 38899999999999999999998755 455555543
No 441
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.91 E-value=0.0082 Score=54.76 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=25.3
Q ss_pred eEEEcCCCCchHHHHHHHHHHc---CCceEEEech
Q 011553 228 VILYGEPGTGKTLLAKAVANST---SATFLRVVGS 259 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l---~~~~~~v~~~ 259 (483)
++++||||+|||+++..+|..+ +..+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 7899999999999999998765 4455555544
No 442
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.91 E-value=0.0024 Score=60.10 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=22.8
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
.+...+.|.||+|+|||||++.++...
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 444559999999999999999999753
No 443
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.91 E-value=0.0065 Score=66.56 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.1
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
++..-+.|+||+|+|||||++.++...
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 344559999999999999999999854
No 444
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.90 E-value=0.003 Score=63.63 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=31.3
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEE
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRV 256 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v 256 (483)
+.+...|+|+|+||||||++++.+|..++.+|+.+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 45667799999999999999999999999999853
No 445
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.90 E-value=0.0058 Score=57.68 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.7
Q ss_pred CceEEEcCCCCchHHHHHHHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~ 247 (483)
.-++|+||+|+|||++.+.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999974
No 446
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.89 E-value=0.0027 Score=62.26 Aligned_cols=72 Identities=21% Similarity=0.408 Sum_probs=50.1
Q ss_pred CCc-eEEEcCCCCchHHHHHHHHHHcCC----ceEEE---------ec-hHHHhhhcCCchHHHHHHHHHHhhcCCeEEE
Q 011553 225 PKG-VILYGEPGTGKTLLAKAVANSTSA----TFLRV---------VG-SELIQKYLGDGPKLVRELFRVADDLSPSIVF 289 (483)
Q Consensus 225 ~~g-vLL~GppGtGKT~Laraia~~l~~----~~~~v---------~~-~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~ 289 (483)
++| ||++||.||||||...++-+..+. +.+.+ +- +-+.+.-+|.--......++.|-+..|+||+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIl 203 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVIL 203 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEE
Confidence 455 888999999999998888887764 22222 11 1222344565555666777778888899999
Q ss_pred EcCCccc
Q 011553 290 IDEIDAV 296 (483)
Q Consensus 290 iDEiD~l 296 (483)
+-|+-.+
T Consensus 204 vGEmRD~ 210 (353)
T COG2805 204 VGEMRDL 210 (353)
T ss_pred EeccccH
Confidence 9998443
No 447
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.85 E-value=0.0019 Score=59.88 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHHc
Q 011553 227 GVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l 249 (483)
-++|+||||+|||+++-.++..+
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 38999999999999999888744
No 448
>PRK13764 ATPase; Provisional
Probab=96.85 E-value=0.0012 Score=71.69 Aligned_cols=69 Identities=22% Similarity=0.338 Sum_probs=41.6
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCC---ceEEE-echHHH-----hhhcCCchHHHHHHHHHHhhcCCeEEEEcCCc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSA---TFLRV-VGSELI-----QKYLGDGPKLVRELFRVADDLSPSIVFIDEID 294 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~---~~~~v-~~~~l~-----~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD 294 (483)
..++|++|||||||||++++++..+.. .+..+ +..++. ..|.. ...........+....|.+|++||+-
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCC
Confidence 567999999999999999999987753 22122 111221 11110 00111223333345679999999984
No 449
>PRK10436 hypothetical protein; Provisional
Probab=96.85 E-value=0.0023 Score=67.65 Aligned_cols=94 Identities=18% Similarity=0.298 Sum_probs=60.8
Q ss_pred CCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC---ceEEEe-chHHH
Q 011553 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA---TFLRVV-GSELI 262 (483)
Q Consensus 187 ~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~---~~~~v~-~~~l~ 262 (483)
..++++++-.+.+.+.+...+..+ ..-+|++||+|+||||+..++...++. +++.+- ..++.
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~~--------------~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~ 259 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQP--------------QGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIP 259 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHhc--------------CCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcccc
Confidence 347888877777777788777542 223889999999999999888777643 333331 11211
Q ss_pred -----hhhcCC-chHHHHHHHHHHhhcCCeEEEEcCCc
Q 011553 263 -----QKYLGD-GPKLVRELFRVADDLSPSIVFIDEID 294 (483)
Q Consensus 263 -----~~~~g~-~~~~i~~~f~~a~~~~p~Il~iDEiD 294 (483)
+..++. ........+..+-...|+||++.||-
T Consensus 260 l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 260 LAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 111111 11234566677777899999999984
No 450
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.85 E-value=0.0033 Score=63.40 Aligned_cols=70 Identities=19% Similarity=0.354 Sum_probs=46.4
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHcC-----CceEEE-echHHHh------hhcCCchHHHHHHHHHHhhcCCeEEEEc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANSTS-----ATFLRV-VGSELIQ------KYLGDGPKLVRELFRVADDLSPSIVFID 291 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l~-----~~~~~v-~~~~l~~------~~~g~~~~~i~~~f~~a~~~~p~Il~iD 291 (483)
...+++++|++|+|||+++++++.... ..++.+ +..++.- .+.........+++..+-+..|+.|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 356799999999999999999998641 122222 1122210 0111112245678888888999999999
Q ss_pred CC
Q 011553 292 EI 293 (483)
Q Consensus 292 Ei 293 (483)
|+
T Consensus 227 Ei 228 (319)
T PRK13894 227 EV 228 (319)
T ss_pred cc
Confidence 98
No 451
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.85 E-value=0.00098 Score=63.11 Aligned_cols=34 Identities=29% Similarity=0.571 Sum_probs=28.1
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~ 263 (483)
|+|+||||+|||++|+.+|..++.+++. ..+++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHHH
Confidence 7899999999999999999999876654 445543
No 452
>PRK06696 uridine kinase; Validated
Probab=96.84 E-value=0.0021 Score=61.43 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=29.9
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSEL 261 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l 261 (483)
+.-|.|.|+|||||||+|+.|+..+ +.+++.++..++
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 4458899999999999999999988 566766655544
No 453
>PRK14528 adenylate kinase; Provisional
Probab=96.84 E-value=0.0011 Score=61.73 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=28.4
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
.+++.||||+|||++++.+|..++.+++. ..+++
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is--~~~~l 36 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS--TGDIL 36 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee--CCHHH
Confidence 48999999999999999999999877654 44444
No 454
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.84 E-value=0.002 Score=60.50 Aligned_cols=111 Identities=21% Similarity=0.306 Sum_probs=61.9
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccc
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR 300 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r 300 (483)
|......++|.|+-|+|||++++.++.+ ++.-+... . ........+... -|+.|||++.+.
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~-----~-~~kd~~~~l~~~------~iveldEl~~~~--- 108 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSIND-----F-DDKDFLEQLQGK------WIVELDELDGLS--- 108 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH----hccCcccc-----C-CCcHHHHHHHHh------HheeHHHHhhcc---
Confidence 3444556889999999999999999665 22111000 0 011122211111 389999998873
Q ss_pred cCCCCCChHHHHHHHHHHHHhc-cCCcC---------CCCeEEEEEeCCCCCCC-hhhcCCCccceEEEcCC
Q 011553 301 YDAHSGGEREIQRTMLELLNQL-DGFDS---------RGDVKVILATNRIESLD-PALLRPGRIDRKIEFPL 361 (483)
Q Consensus 301 ~~~~~~~~~~~~~~l~~lL~~l-~~~~~---------~~~v~vI~ttn~~~~ld-~allr~gR~~~~i~~~~ 361 (483)
..-...+..++..- +.+.. ....++|+|||..+-|. +.=-| ||- .|++..
T Consensus 109 --------k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf~-~v~v~~ 169 (198)
T PF05272_consen 109 --------KKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RFW-PVEVSK 169 (198)
T ss_pred --------hhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EEE-EEEEcC
Confidence 12234555665531 11111 12478899999877543 33445 773 666654
No 455
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.83 E-value=0.0022 Score=57.29 Aligned_cols=35 Identities=26% Similarity=0.490 Sum_probs=28.6
Q ss_pred EEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhc
Q 011553 230 LYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYL 266 (483)
Q Consensus 230 L~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~ 266 (483)
|.||||+|||++|+.||...+. ..++..+++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHHH
Confidence 6899999999999999999864 5666777766544
No 456
>PRK02496 adk adenylate kinase; Provisional
Probab=96.83 E-value=0.0011 Score=61.29 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=25.3
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
++|.||||+|||++++.+|..++.+++.
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 8999999999999999999999876554
No 457
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.83 E-value=0.0046 Score=62.96 Aligned_cols=117 Identities=17% Similarity=0.265 Sum_probs=64.4
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---------CCceEEEechH---------HHhhh-------cCC-------
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---------SATFLRVVGSE---------LIQKY-------LGD------- 268 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---------~~~~~~v~~~~---------l~~~~-------~g~------- 268 (483)
|+....-+.++|+||+|||.|+..+|-.. +...++++..+ +...+ ...
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 34555558899999999999999887432 12456665443 11111 000
Q ss_pred -chHH---HHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeC
Q 011553 269 -GPKL---VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (483)
Q Consensus 269 -~~~~---i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn 338 (483)
.... +..+........+.+|+||-|-.++...+... +.....+..|.+++..+..+....++.||+|..
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~-g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNq 271 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGR-GELSARQMHLGKFLRSLQRLADEFGVAVVITNQ 271 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 0111 11122223345678999999988764322111 112233444666666655554456777877743
No 458
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.82 E-value=0.0061 Score=63.72 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=21.5
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
+..++-+.||+|+|||||+|.+....
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHccc
Confidence 34447899999999999999998643
No 459
>PRK14527 adenylate kinase; Provisional
Probab=96.81 E-value=0.0011 Score=61.87 Aligned_cols=32 Identities=34% Similarity=0.429 Sum_probs=27.1
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
.+.-++++||||+|||++|+.+|+.++...+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 34559999999999999999999999875543
No 460
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.81 E-value=0.0033 Score=61.15 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=27.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHc---CCceEEEechHH
Q 011553 228 VILYGEPGTGKTLLAKAVANST---SATFLRVVGSEL 261 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l 261 (483)
|+|+|+||||||++|++++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999887 355666655444
No 461
>PRK10867 signal recognition particle protein; Provisional
Probab=96.80 E-value=0.0089 Score=62.72 Aligned_cols=74 Identities=23% Similarity=0.358 Sum_probs=45.0
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc----CCceEEEechHHHh----------h------h---cC-CchHHHHHHHH
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST----SATFLRVVGSELIQ----------K------Y---LG-DGPKLVRELFR 278 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l----~~~~~~v~~~~l~~----------~------~---~g-~~~~~i~~~f~ 278 (483)
..|.-++++|++|+||||++..+|..+ +.....+++..+.. . + .+ .........+.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 346679999999999999777777643 44555555431111 0 1 01 12233345555
Q ss_pred HHhhcCCeEEEEcCCccc
Q 011553 279 VADDLSPSIVFIDEIDAV 296 (483)
Q Consensus 279 ~a~~~~p~Il~iDEiD~l 296 (483)
.+......+|+||=...+
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 566556679999987654
No 462
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.80 E-value=0.0013 Score=66.95 Aligned_cols=71 Identities=20% Similarity=0.354 Sum_probs=47.3
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCC--ceEEE-echHHHhh------------hcCCchHHHHHHHHHHhhcCCeE
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRV-VGSELIQK------------YLGDGPKLVRELFRVADDLSPSI 287 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v-~~~~l~~~------------~~g~~~~~i~~~f~~a~~~~p~I 287 (483)
....++++.||+||||||++++++..... ..+.+ +..++.-. ..+...-....++..+.+..|..
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 44677999999999999999999987653 22222 11111100 01111223567788888889999
Q ss_pred EEEcCC
Q 011553 288 VFIDEI 293 (483)
Q Consensus 288 l~iDEi 293 (483)
|++.|+
T Consensus 240 IivGEi 245 (344)
T PRK13851 240 ILLGEM 245 (344)
T ss_pred EEEEee
Confidence 999998
No 463
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=96.79 E-value=0.0064 Score=57.11 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=20.6
Q ss_pred CCc-eEEEcCCCCchHHHHHHHHHHc
Q 011553 225 PKG-VILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 225 ~~g-vLL~GppGtGKT~Laraia~~l 249 (483)
..+ .+|+||+|+|||+|..+++-.+
T Consensus 20 ~~gl~~i~G~NGsGKStll~ai~~~l 45 (198)
T cd03276 20 GPRVNFIVGNNGSGKSAILTALTIGL 45 (198)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 344 4899999999999999998643
No 464
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.78 E-value=0.0029 Score=68.97 Aligned_cols=93 Identities=22% Similarity=0.227 Sum_probs=61.2
Q ss_pred CCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCc-eEEEcCCCCchHHHHHHHHHHcCC---ceEEEec-hHH
Q 011553 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKG-VILYGEPGTGKTLLAKAVANSTSA---TFLRVVG-SEL 261 (483)
Q Consensus 187 ~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~g-vLL~GppGtGKT~Laraia~~l~~---~~~~v~~-~~l 261 (483)
..++.+++-.+++.+.+.+.+.. +.| ||++||+|+||||+..++.+.++. .++.+-- .++
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~ 356 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEI 356 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCcee
Confidence 35778887777778888877754 234 789999999999999888887753 3333211 111
Q ss_pred -----HhhhcC-CchHHHHHHHHHHhhcCCeEEEEcCCc
Q 011553 262 -----IQKYLG-DGPKLVRELFRVADDLSPSIVFIDEID 294 (483)
Q Consensus 262 -----~~~~~g-~~~~~i~~~f~~a~~~~p~Il~iDEiD 294 (483)
.+..+. .........+..+-...|.||++.||-
T Consensus 357 ~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 357 NLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred cCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 111111 111234566777777899999999994
No 465
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.78 E-value=0.0012 Score=62.77 Aligned_cols=29 Identities=34% Similarity=0.536 Sum_probs=25.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEE
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRV 256 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v 256 (483)
|+++||||+|||++++.+|..++.+++.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999998766553
No 466
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.013 Score=60.25 Aligned_cols=96 Identities=17% Similarity=0.183 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHH-------Hhhh-
Q 011553 197 DAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSEL-------IQKY- 265 (483)
Q Consensus 197 ~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l-------~~~~- 265 (483)
.++++.+.+.+...+..+..+ ...++-++|+||+|+||||++..+|..+. ..+..+++... ...|
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~ya 292 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYV 292 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHh
Confidence 455666665554433322211 12346699999999999999999997653 23333333211 1111
Q ss_pred --------cCCchHHHHHHHHHHhh-cCCeEEEEcCCccc
Q 011553 266 --------LGDGPKLVRELFRVADD-LSPSIVFIDEIDAV 296 (483)
Q Consensus 266 --------~g~~~~~i~~~f~~a~~-~~p~Il~iDEiD~l 296 (483)
....+..+...+..+.. ....+||||-....
T Consensus 293 e~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 293 KTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKN 332 (436)
T ss_pred hhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCcccc
Confidence 12234445555555543 23579999987553
No 467
>PF13245 AAA_19: Part of AAA domain
Probab=96.78 E-value=0.0021 Score=50.59 Aligned_cols=22 Identities=45% Similarity=0.690 Sum_probs=17.2
Q ss_pred eEEEcCCCCchH-HHHHHHHHHc
Q 011553 228 VILYGEPGTGKT-LLAKAVANST 249 (483)
Q Consensus 228 vLL~GppGtGKT-~Laraia~~l 249 (483)
+++.|||||||| ++++.++...
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 556999999999 6666666655
No 468
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.78 E-value=0.011 Score=63.24 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=28.8
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHH----cCCceEEEec
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANS----TSATFLRVVG 258 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~----l~~~~~~v~~ 258 (483)
|+...+.+||+||||||||+||..++.+ .+.+.++++.
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~ 58 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF 58 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 5677778999999999999999988542 2456555543
No 469
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.78 E-value=0.012 Score=55.19 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.7
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
-++|+||+|+|||+|+++++..
T Consensus 24 ~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999854
No 470
>PRK04040 adenylate kinase; Provisional
Probab=96.76 E-value=0.0017 Score=60.56 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=25.3
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc--CCceE
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST--SATFL 254 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l--~~~~~ 254 (483)
+.-++|+|+||||||++++.++..+ +..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 3458999999999999999999999 55543
No 471
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.76 E-value=0.011 Score=55.41 Aligned_cols=102 Identities=23% Similarity=0.372 Sum_probs=53.2
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc---CCc--eEEEechHH-----Hhhh---c---------C-CchHHHHHHHHHHh
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST---SAT--FLRVVGSEL-----IQKY---L---------G-DGPKLVRELFRVAD 281 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l---~~~--~~~v~~~~l-----~~~~---~---------g-~~~~~i~~~f~~a~ 281 (483)
|+-++|+||+|+||||.+-.+|..+ +.. ++..+.... ...| . . .....+...++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 4568999999999999888777654 333 333322110 1111 0 1 11233445555555
Q ss_pred hcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC
Q 011553 282 DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (483)
Q Consensus 282 ~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~ 339 (483)
...-.+|+||-.... ..+.+....+..++..+ ....+.++++++.
T Consensus 81 ~~~~D~vlIDT~Gr~---------~~d~~~~~el~~~~~~~----~~~~~~LVlsa~~ 125 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS---------PRDEELLEELKKLLEAL----NPDEVHLVLSATM 125 (196)
T ss_dssp HTTSSEEEEEE-SSS---------STHHHHHHHHHHHHHHH----SSSEEEEEEEGGG
T ss_pred hcCCCEEEEecCCcc---------hhhHHHHHHHHHHhhhc----CCccceEEEeccc
Confidence 544569999986433 12334444555555544 2335566665543
No 472
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.76 E-value=0.014 Score=58.96 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.5
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
.+.-++|+||+|+||||++..+|..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35568999999999999999999865
No 473
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.75 E-value=0.0061 Score=60.07 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.0
Q ss_pred CCceEEEcCCCCchHHHHHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~ 248 (483)
..-+-|.||+|+|||||.|.||.-
T Consensus 28 Ge~vaLlGpSGaGKsTlLRiIAGL 51 (345)
T COG1118 28 GELVALLGPSGAGKSTLLRIIAGL 51 (345)
T ss_pred CcEEEEECCCCCcHHHHHHHHhCc
Confidence 344889999999999999999973
No 474
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.75 E-value=0.0011 Score=56.83 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=20.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHc
Q 011553 228 VILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l 249 (483)
|+|.|+|||||||+|+.++..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 475
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.75 E-value=0.012 Score=56.21 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.0
Q ss_pred CCceEEEcCCCCchHHHHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~ 247 (483)
.+-++|+||+|+|||++.+.++-
T Consensus 30 ~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 30 SRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CeEEEEECCCCCChHHHHHHHHH
Confidence 34489999999999999999875
No 476
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.75 E-value=0.006 Score=60.33 Aligned_cols=83 Identities=25% Similarity=0.282 Sum_probs=47.8
Q ss_pred hhcCCchHHHHHHHH--HHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 264 KYLGDGPKLVRELFR--VADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 264 ~~~g~~~~~i~~~f~--~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
+|+.+...-.++-.. .|-...|.|+++||.-+-.. .-...++|..|++|-..+.. .+|+.|+
T Consensus 160 ~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALD------PLIR~~mQdeLl~Lq~~l~K-------TIvFitH--- 223 (386)
T COG4175 160 KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALD------PLIRTEMQDELLELQAKLKK-------TIVFITH--- 223 (386)
T ss_pred cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcC------hHHHHHHHHHHHHHHHHhCC-------eEEEEec---
Confidence 444444444444333 33445688999999854321 11255788888888776543 3666666
Q ss_pred CCChhhcCCCccc-----eEEEcCCC
Q 011553 342 SLDPALLRPGRID-----RKIEFPLP 362 (483)
Q Consensus 342 ~ld~allr~gR~~-----~~i~~~~P 362 (483)
+||+|++--.|+. +++.+..|
T Consensus 224 DLdEAlriG~rIaimkdG~ivQ~Gtp 249 (386)
T COG4175 224 DLDEALRIGDRIAIMKDGEIVQVGTP 249 (386)
T ss_pred CHHHHHhccceEEEecCCeEEEeCCH
Confidence 5778875433442 35555554
No 477
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.75 E-value=0.0049 Score=58.90 Aligned_cols=57 Identities=32% Similarity=0.514 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 271 KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 271 ~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
...|..|..+....|.|++|||+=+.+ +..+++.-...++++-. .+..+|+.|+..+
T Consensus 152 M~aRLaFsia~~~~pdILllDEvlavG----------D~~F~~K~~~rl~e~~~----~~~tiv~VSHd~~ 208 (249)
T COG1134 152 MYARLAFSVATHVEPDILLLDEVLAVG----------DAAFQEKCLERLNELVE----KNKTIVLVSHDLG 208 (249)
T ss_pred HHHHHHHhhhhhcCCCEEEEehhhhcC----------CHHHHHHHHHHHHHHHH----cCCEEEEEECCHH
Confidence 456778888888999999999985553 55566666666655411 2356777777644
No 478
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.74 E-value=0.0043 Score=58.28 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=22.8
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
.+...+.|.|++|+|||+|.+.++...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344559999999999999999999754
No 479
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.74 E-value=0.0047 Score=63.33 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=20.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHc
Q 011553 228 VILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l 249 (483)
+++.|.||||||.||-.++..+
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 480
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.74 E-value=0.0086 Score=67.28 Aligned_cols=28 Identities=39% Similarity=0.596 Sum_probs=23.5
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
+++...+.|+||+|+|||||++.++...
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445559999999999999999999754
No 481
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.74 E-value=0.01 Score=64.18 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=23.4
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
+++..-+.|+||+|+|||||++.++...
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445559999999999999999999754
No 482
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.73 E-value=0.0047 Score=57.78 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=23.2
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
+.+...+.|.||+|+|||+|++.++...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445559999999999999999999753
No 483
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=96.73 E-value=0.0094 Score=55.00 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=20.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcC
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~ 250 (483)
-.+|+||.|+|||.+..||+-.++
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~ 47 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLG 47 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 377999999999999999987654
No 484
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.72 E-value=0.0093 Score=65.50 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=23.5
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
+++...+.|+|++|+|||||++.++...
T Consensus 364 i~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 364 VPSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3445559999999999999999999754
No 485
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.71 E-value=0.0026 Score=65.35 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=22.4
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
....-+.|.||+|||||||.++||...
T Consensus 28 ~~Ge~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 28 ADGEFIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 334458899999999999999999743
No 486
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.71 E-value=0.0047 Score=61.63 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=27.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
-++|.|+|||||||+|+.+++.+. .++.++...+.
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r 38 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLR 38 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHH
Confidence 488999999999999999999983 34445555544
No 487
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.70 E-value=0.0024 Score=64.02 Aligned_cols=50 Identities=22% Similarity=0.434 Sum_probs=33.5
Q ss_pred HHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCC
Q 011553 279 VADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 342 (483)
Q Consensus 279 ~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ 342 (483)
.|-...|.+|++||-- ++-+......+.+++.++.. .+..||++|+..+.
T Consensus 137 ~al~~~p~lllLDEPt----------~gLD~~~~~~l~~~l~~~~~----~g~tvi~~sH~~~~ 186 (302)
T TIGR01188 137 ASLIHQPDVLFLDEPT----------TGLDPRTRRAIWDYIRALKE----EGVTILLTTHYMEE 186 (302)
T ss_pred HHHhcCCCEEEEeCCC----------cCCCHHHHHHHHHHHHHHHh----CCCEEEEECCCHHH
Confidence 3334568899999963 34466677777788776531 24678888887553
No 488
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.69 E-value=0.012 Score=63.75 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=23.3
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
+++...+.|+||+|+|||||++.++...
T Consensus 345 i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 345 VPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445559999999999999999999744
No 489
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.69 E-value=0.002 Score=49.62 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=20.6
Q ss_pred eEEEcCCCCchHHHHHHHHHHc
Q 011553 228 VILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l 249 (483)
+.+.|+||+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 490
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.69 E-value=0.0046 Score=63.17 Aligned_cols=110 Identities=13% Similarity=0.287 Sum_probs=59.2
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCC-----ceEEEe-------chHHHhhh---c-----CCchHH-H---HHHHHHH---
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSA-----TFLRVV-------GSELIQKY---L-----GDGPKL-V---RELFRVA--- 280 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~-----~~~~v~-------~~~l~~~~---~-----g~~~~~-i---~~~f~~a--- 280 (483)
++|+||||||||+|++.+++.+.. .++.+- ..++.... + .+.+.. + ..+...|
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f 215 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRL 215 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999987643 122221 12222211 1 111111 1 1122222
Q ss_pred -hhcCCeEEEEcCCcccccccc-------CC-CCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEe
Q 011553 281 -DDLSPSIVFIDEIDAVGTKRY-------DA-HSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (483)
Q Consensus 281 -~~~~p~Il~iDEiD~l~~~r~-------~~-~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~tt 337 (483)
......+|++|++..++.... .. ..+.+......+-.++..-......+.+.+|+|.
T Consensus 216 ~~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s~G~~~s~~~~~~rl~~~A~~~~~~GSiT~i~Tv 281 (380)
T PRK12608 216 VEQGKDVVILLDSLTRLARAYNNEVESSGRTLSGGVDARALQRPKRLFGAARNIEEGGSLTIIATA 281 (380)
T ss_pred HHcCCCEEEEEeCcHHHHHHHHhhhcccCCCCCCCcChHHHhhhHHHHHhcCCCCCCcchhheEEE
Confidence 223456999999988753321 11 1234445555556666655444435566666664
No 491
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.68 E-value=0.017 Score=52.05 Aligned_cols=132 Identities=20% Similarity=0.246 Sum_probs=73.9
Q ss_pred EcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHH
Q 011553 231 YGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGERE 310 (483)
Q Consensus 231 ~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~ 310 (483)
.+.+||||||++.++++-.+- +-.+...++.++ .....+..+.+........+||+|-=.... .+
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~-----------re 69 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQK-----------RE 69 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchH-----------HH
Confidence 578999999999999998873 333444444332 344555666666643344588888654442 12
Q ss_pred HHHHHHHHHHhccC--CcCCCCeEEEEEeCCCCCCChh--------hcCCCccceEEEcCCCCHHHHHHHHHHHHcCC
Q 011553 311 IQRTMLELLNQLDG--FDSRGDVKVILATNRIESLDPA--------LLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM 378 (483)
Q Consensus 311 ~~~~l~~lL~~l~~--~~~~~~v~vI~ttn~~~~ld~a--------llr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~ 378 (483)
...+.+.+..+.. +....++.+|+-.=..+.-.+. ++..|-=...|.....+...-..|+..++...
T Consensus 70 -R~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rf 146 (168)
T PF08303_consen 70 -RKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRF 146 (168)
T ss_pred -HHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhc
Confidence 2334444443322 2223477788776333321122 22212122366666666777777777776654
No 492
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.68 E-value=0.011 Score=66.15 Aligned_cols=28 Identities=32% Similarity=0.498 Sum_probs=23.3
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
+++...+.|+||+|+|||||++.++...
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445559999999999999999999754
No 493
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.68 E-value=0.0057 Score=65.47 Aligned_cols=77 Identities=21% Similarity=0.284 Sum_probs=51.3
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechH----HHh----------hhc--------------CCc
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSE----LIQ----------KYL--------------GDG 269 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~----l~~----------~~~--------------g~~ 269 (483)
|+.....+||.||||+|||+|+-.++... +-+.++++..+ +.. .+. ...
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 45666669999999999999999888754 44555554322 111 110 011
Q ss_pred hHHHHHHHHHHhhcCCeEEEEcCCcccc
Q 011553 270 PKLVRELFRVADDLSPSIVFIDEIDAVG 297 (483)
Q Consensus 270 ~~~i~~~f~~a~~~~p~Il~iDEiD~l~ 297 (483)
...+..+........|.+|+||-+..+.
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 3455666777777788999999998763
No 494
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.68 E-value=0.004 Score=63.09 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=33.9
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhh
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 265 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~ 265 (483)
..++|.|+||||||+|+++++...+.+++.-.+.++....
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~ 202 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEK 202 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHh
Confidence 3599999999999999999999999988777766665544
No 495
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.01 Score=64.63 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=27.0
Q ss_pred hhhhhC--CCCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 216 LYEDIG--IKPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 216 ~~~~~g--~~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
+++.+. +++...+.|+||+|+||||+|..+-+..
T Consensus 483 Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 483 VLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred hhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 555554 4566669999999999999999998743
No 496
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.67 E-value=0.004 Score=58.40 Aligned_cols=41 Identities=27% Similarity=0.502 Sum_probs=31.7
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc-CCceEEEechHHHh
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST-SATFLRVVGSELIQ 263 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l-~~~~~~v~~~~l~~ 263 (483)
..|.-+++.|+||+|||+++..+...+ ...++.++..++..
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 446669999999999999999999988 77888998877654
No 497
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.67 E-value=0.0012 Score=59.66 Aligned_cols=29 Identities=24% Similarity=0.466 Sum_probs=25.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEe
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~ 257 (483)
++++|.|||||||+++.++ .++.+.+.++
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 7899999999999999999 8888776543
No 498
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.66 E-value=0.0076 Score=58.99 Aligned_cols=116 Identities=20% Similarity=0.324 Sum_probs=64.2
Q ss_pred eEEEcCCCCchHHHHHHHHHHc---------CCceEEEechH---------HHhhhcCCc---------------h---H
Q 011553 228 VILYGEPGTGKTLLAKAVANST---------SATFLRVVGSE---------LIQKYLGDG---------------P---K 271 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l---------~~~~~~v~~~~---------l~~~~~g~~---------------~---~ 271 (483)
.=|+||||||||.||..+|-.. +...++++... +...+.-.. . .
T Consensus 41 tEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~ 120 (256)
T PF08423_consen 41 TEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLE 120 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHH
T ss_pred EEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHH
Confidence 5599999999999999887543 23466665422 222211110 1 1
Q ss_pred HHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCC
Q 011553 272 LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (483)
Q Consensus 272 ~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld 344 (483)
.+..+..........+|+||-|-.++....... +...+.++.|..++..+..+....++.||+|..-...++
T Consensus 121 ~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~-~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~ 192 (256)
T PF08423_consen 121 LLEQLPKLLSESKIKLIVIDSIAALFRSEFSGR-GDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKID 192 (256)
T ss_dssp HHHHHHHHHHHSCEEEEEEETSSHHHHHHSGST-TTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT
T ss_pred HHHHHHhhccccceEEEEecchHHHHHHHHccc-hhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecCC
Confidence 122222222334567999999999875433221 122344566666666665555566788887653333333
No 499
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.66 E-value=0.0072 Score=67.71 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=42.3
Q ss_pred CceEEEcCCCCchHHHHHHHHHHc---C--CceEEEechHH----HhhhcCCchHHHHHHHHHHh----------hcCCe
Q 011553 226 KGVILYGEPGTGKTLLAKAVANST---S--ATFLRVVGSEL----IQKYLGDGPKLVRELFRVAD----------DLSPS 286 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l---~--~~~~~v~~~~l----~~~~~g~~~~~i~~~f~~a~----------~~~p~ 286 (483)
+-++|.|+||||||++++++...+ + .+++-+..+.- +....|.....++.++.... .....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 358999999999999999997754 3 23333322221 12223333344555553211 12346
Q ss_pred EEEEcCCccc
Q 011553 287 IVFIDEIDAV 296 (483)
Q Consensus 287 Il~iDEiD~l 296 (483)
+|++||+..+
T Consensus 419 llIvDEaSMv 428 (720)
T TIGR01448 419 LLIVDESSMM 428 (720)
T ss_pred EEEEeccccC
Confidence 9999999776
No 500
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.65 E-value=0.0074 Score=54.94 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=19.4
Q ss_pred CceEEEcCCCCchHH-HHHHHHHHcC
Q 011553 226 KGVILYGEPGTGKTL-LAKAVANSTS 250 (483)
Q Consensus 226 ~gvLL~GppGtGKT~-Laraia~~l~ 250 (483)
+.+++.||+|||||+ ++..+.....
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~ 50 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALK 50 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhc
Confidence 569999999999999 5555555443
Done!