Query 011553
Match_columns 483
No_of_seqs 526 out of 3956
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 10:32:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011553.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011553hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_I 26S protease regulatory 100.0 3.6E-83 1.2E-87 654.2 35.9 437 1-483 1-437 (437)
2 4b4t_J 26S protease regulatory 100.0 2.5E-64 8.6E-69 514.1 37.8 343 97-476 54-396 (405)
3 4b4t_K 26S protease regulatory 100.0 1.2E-63 4.2E-68 515.9 37.4 384 50-474 35-419 (428)
4 4b4t_L 26S protease subunit RP 100.0 8.4E-62 2.9E-66 502.9 36.8 340 99-475 89-428 (437)
5 4b4t_M 26S protease regulatory 100.0 4.2E-61 1.4E-65 497.3 32.9 348 97-483 61-434 (434)
6 4b4t_H 26S protease regulatory 100.0 2.4E-59 8.3E-64 482.8 30.1 314 123-473 141-454 (467)
7 3cf2_A TER ATPase, transitiona 100.0 8.2E-45 2.8E-49 400.0 12.8 255 183-474 469-748 (806)
8 3cf2_A TER ATPase, transitiona 100.0 9.7E-42 3.3E-46 375.5 21.3 249 183-471 196-461 (806)
9 3cf0_A Transitional endoplasmi 100.0 2.1E-38 7E-43 315.9 22.7 251 183-470 7-282 (301)
10 3h4m_A Proteasome-activating n 100.0 1.2E-37 4.1E-42 306.9 26.5 260 179-475 5-264 (285)
11 2x8a_A Nuclear valosin-contain 100.0 4.6E-38 1.6E-42 309.1 19.6 247 185-471 4-266 (274)
12 1lv7_A FTSH; alpha/beta domain 100.0 1.1E-36 3.9E-41 295.9 27.3 253 181-471 2-254 (257)
13 2ce7_A Cell division protein F 100.0 4.1E-37 1.4E-41 322.7 25.6 249 185-471 10-258 (476)
14 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.7E-36 5.9E-41 304.8 23.3 227 184-452 5-233 (322)
15 3eie_A Vacuolar protein sortin 100.0 3.3E-36 1.1E-40 302.7 22.1 248 182-471 9-300 (322)
16 2qp9_X Vacuolar protein sortin 100.0 4.3E-35 1.5E-39 298.5 22.8 229 182-452 42-271 (355)
17 2dhr_A FTSH; AAA+ protein, hex 100.0 4.9E-35 1.7E-39 308.6 22.5 249 186-472 26-274 (499)
18 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.8E-35 9.7E-40 285.9 17.9 251 186-472 1-252 (262)
19 3hu3_A Transitional endoplasmi 100.0 1.3E-34 4.4E-39 305.8 24.3 248 185-472 198-462 (489)
20 1ixz_A ATP-dependent metallopr 100.0 1.5E-33 5.1E-38 273.4 25.9 246 183-466 8-253 (254)
21 2zan_A Vacuolar protein sortin 100.0 3.9E-34 1.3E-38 299.8 21.4 229 182-452 125-355 (444)
22 1iy2_A ATP-dependent metallopr 100.0 2.7E-32 9.2E-37 268.4 26.8 246 183-466 32-277 (278)
23 3b9p_A CG5977-PA, isoform A; A 100.0 1.7E-32 5.9E-37 271.8 20.5 250 181-469 11-272 (297)
24 3d8b_A Fidgetin-like protein 1 100.0 5.7E-32 1.9E-36 275.7 22.3 250 182-473 75-338 (357)
25 3vfd_A Spastin; ATPase, microt 100.0 8.1E-32 2.8E-36 277.6 22.9 249 180-470 104-366 (389)
26 2r62_A Cell division protease 100.0 9.5E-35 3.2E-39 283.8 0.4 251 184-472 4-256 (268)
27 1ypw_A Transitional endoplasmi 100.0 9.2E-35 3.1E-39 324.5 -3.3 233 183-452 469-701 (806)
28 1ypw_A Transitional endoplasmi 100.0 4.5E-28 1.6E-32 270.5 22.2 247 184-470 197-460 (806)
29 3t15_A Ribulose bisphosphate c 99.9 4.7E-26 1.6E-30 225.7 14.1 177 221-403 32-222 (293)
30 3syl_A Protein CBBX; photosynt 99.9 6.2E-22 2.1E-26 196.6 16.4 176 192-380 32-222 (309)
31 3m6a_A ATP-dependent protease 99.9 3.3E-24 1.1E-28 229.7 -2.2 177 181-375 71-266 (543)
32 3pfi_A Holliday junction ATP-d 99.9 1.3E-20 4.4E-25 189.7 23.8 223 180-468 18-253 (338)
33 3uk6_A RUVB-like 2; hexameric 99.9 6.3E-21 2.2E-25 194.0 18.8 222 186-470 39-331 (368)
34 2c9o_A RUVB-like 1; hexameric 99.9 4.2E-21 1.4E-25 201.6 15.5 106 186-300 32-142 (456)
35 1hqc_A RUVB; extended AAA-ATPa 99.8 5.9E-20 2E-24 183.4 19.4 170 183-380 4-186 (324)
36 1ofh_A ATP-dependent HSL prote 99.8 6.9E-20 2.3E-24 181.4 15.0 259 191-470 15-300 (310)
37 2r44_A Uncharacterized protein 99.8 8.2E-19 2.8E-23 176.1 18.6 245 186-473 22-301 (331)
38 2chg_A Replication factor C sm 99.8 2.7E-18 9.3E-23 160.4 20.6 208 180-467 6-224 (226)
39 3hws_A ATP-dependent CLP prote 99.8 6.3E-19 2.2E-23 179.5 16.0 179 193-373 17-267 (363)
40 1g8p_A Magnesium-chelatase 38 99.8 5.4E-18 1.8E-22 170.9 22.6 258 183-475 16-328 (350)
41 1g41_A Heat shock protein HSLU 99.8 2.6E-20 9E-25 192.8 4.3 169 191-371 15-188 (444)
42 2v1u_A Cell division control p 99.8 6E-18 2E-22 172.2 21.4 226 189-471 17-278 (387)
43 3pvs_A Replication-associated 99.8 2E-18 6.9E-23 180.3 16.8 213 182-468 17-243 (447)
44 3u61_B DNA polymerase accessor 99.8 4.6E-18 1.6E-22 170.1 16.6 159 179-374 14-177 (324)
45 1d2n_A N-ethylmaleimide-sensit 99.8 2.9E-18 9.9E-23 167.4 14.3 169 191-371 33-208 (272)
46 1njg_A DNA polymerase III subu 99.8 2.3E-17 7.8E-22 155.8 19.1 208 181-466 13-248 (250)
47 1l8q_A Chromosomal replication 99.8 2.3E-17 8E-22 165.1 18.7 168 186-380 6-184 (324)
48 1sxj_D Activator 1 41 kDa subu 99.8 1.8E-17 6.2E-22 167.1 18.0 164 178-379 24-209 (353)
49 2z4s_A Chromosomal replication 99.7 2.1E-17 7.3E-22 172.5 18.2 220 186-470 100-333 (440)
50 1jbk_A CLPB protein; beta barr 99.7 4.4E-18 1.5E-22 155.2 10.9 162 184-371 15-194 (195)
51 1sxj_A Activator 1 95 kDa subu 99.7 6.2E-18 2.1E-22 180.1 12.6 208 178-409 26-253 (516)
52 3pxg_A Negative regulator of g 99.7 8.3E-18 2.8E-22 177.0 12.9 156 182-378 171-341 (468)
53 1um8_A ATP-dependent CLP prote 99.7 1.9E-17 6.5E-22 169.3 14.1 178 192-372 22-283 (376)
54 3bos_A Putative DNA replicatio 99.7 7.2E-17 2.5E-21 153.1 17.0 207 186-467 23-241 (242)
55 1r6b_X CLPA protein; AAA+, N-t 99.7 8.9E-18 3.1E-22 187.0 12.2 234 184-469 179-433 (758)
56 2qby_B CDC6 homolog 3, cell di 99.7 1.3E-16 4.3E-21 162.7 19.5 158 191-376 20-211 (384)
57 1in4_A RUVB, holliday junction 99.7 7.8E-16 2.7E-20 154.9 24.9 223 182-470 16-251 (334)
58 4fcw_A Chaperone protein CLPB; 99.7 3.2E-17 1.1E-21 162.6 14.5 170 191-377 17-231 (311)
59 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 1.6E-17 5.5E-22 175.2 12.2 235 192-469 23-285 (500)
60 2chq_A Replication factor C sm 99.7 1.6E-16 5.4E-21 157.6 18.7 223 180-443 6-236 (319)
61 3pxi_A Negative regulator of g 99.7 8.4E-17 2.9E-21 179.1 18.1 162 191-377 491-677 (758)
62 2qby_A CDC6 homolog 1, cell di 99.7 3.5E-16 1.2E-20 158.8 19.5 226 189-470 18-273 (386)
63 3te6_A Regulatory protein SIR3 99.7 1.8E-17 6.2E-22 164.9 8.4 160 193-378 22-214 (318)
64 1jr3_A DNA polymerase III subu 99.7 4E-16 1.4E-20 158.4 18.1 220 181-443 6-254 (373)
65 1iqp_A RFCS; clamp loader, ext 99.7 1.4E-15 4.8E-20 151.2 21.6 224 179-443 13-244 (327)
66 1qvr_A CLPB protein; coiled co 99.7 1.4E-16 4.9E-21 179.4 15.7 168 183-376 162-346 (854)
67 2p65_A Hypothetical protein PF 99.7 9.4E-17 3.2E-21 146.0 10.8 155 184-363 15-187 (187)
68 1sxj_B Activator 1 37 kDa subu 99.7 4.8E-15 1.6E-19 147.1 24.1 179 179-395 9-200 (323)
69 3f9v_A Minichromosome maintena 99.7 4.4E-17 1.5E-21 176.0 9.8 250 192-472 296-590 (595)
70 1r6b_X CLPA protein; AAA+, N-t 99.7 2.1E-16 7.2E-21 175.9 14.8 165 192-377 459-668 (758)
71 1fnn_A CDC6P, cell division co 99.7 1.5E-15 5E-20 154.8 19.7 224 190-470 16-275 (389)
72 3pxi_A Negative regulator of g 99.7 4.1E-16 1.4E-20 173.6 16.4 156 182-378 171-341 (758)
73 2bjv_A PSP operon transcriptio 99.6 6.1E-16 2.1E-20 150.2 12.5 161 188-375 3-194 (265)
74 1sxj_E Activator 1 40 kDa subu 99.6 1.1E-14 3.7E-19 147.1 20.1 190 180-409 3-238 (354)
75 1sxj_C Activator 1 40 kDa subu 99.6 4.5E-14 1.5E-18 142.2 22.7 222 179-442 13-248 (340)
76 1ojl_A Transcriptional regulat 99.6 6.2E-16 2.1E-20 153.7 7.8 158 191-375 2-190 (304)
77 1qvr_A CLPB protein; coiled co 99.6 2E-15 6.7E-20 170.1 11.8 167 190-377 557-772 (854)
78 3co5_A Putative two-component 99.6 1.7E-15 5.8E-20 133.5 5.6 131 192-361 5-141 (143)
79 3n70_A Transport activator; si 99.6 3.6E-15 1.2E-19 131.7 6.7 131 192-361 2-143 (145)
80 3k1j_A LON protease, ATP-depen 99.5 2.8E-14 9.6E-19 154.7 13.1 230 183-468 33-374 (604)
81 1w5s_A Origin recognition comp 99.4 2E-12 6.8E-17 132.7 17.3 232 190-470 21-294 (412)
82 1a5t_A Delta prime, HOLB; zinc 99.4 6.1E-12 2.1E-16 126.4 19.1 147 195-375 6-180 (334)
83 3cmw_A Protein RECA, recombina 99.4 1.2E-13 4E-18 162.0 4.5 154 185-339 1014-1217(1706)
84 3kw6_A 26S protease regulatory 99.4 1.7E-12 5.7E-17 102.1 9.3 77 360-473 1-77 (78)
85 2gno_A DNA polymerase III, gam 99.4 4.6E-12 1.6E-16 125.6 14.0 142 195-375 1-152 (305)
86 3f8t_A Predicted ATPase involv 99.3 7.6E-12 2.6E-16 129.0 12.8 245 193-475 215-489 (506)
87 2krk_A 26S protease regulatory 99.3 4.4E-12 1.5E-16 101.5 8.5 77 359-472 8-84 (86)
88 1ny5_A Transcriptional regulat 99.3 1.3E-11 4.3E-16 126.6 12.4 213 190-467 136-385 (387)
89 3vlf_B 26S protease regulatory 99.2 2.7E-11 9.3E-16 97.4 8.7 75 363-474 2-76 (88)
90 4akg_A Glutathione S-transfera 99.2 2.3E-10 8E-15 139.7 19.1 139 225-378 1267-1434(2695)
91 3ec2_A DNA replication protein 99.2 2E-10 6.9E-15 104.4 13.2 132 185-341 4-144 (180)
92 3aji_B S6C, proteasome (prosom 99.0 3.3E-10 1.1E-14 90.0 7.4 75 363-474 2-76 (83)
93 3dzd_A Transcriptional regulat 99.0 2.2E-10 7.6E-15 116.6 7.1 157 191-375 129-316 (368)
94 2dzn_B 26S protease regulatory 99.0 8E-11 2.7E-15 93.4 3.0 81 365-482 1-81 (82)
95 2wg5_A General control protein 99.0 6.1E-10 2.1E-14 92.8 7.2 87 97-183 22-108 (109)
96 2qen_A Walker-type ATPase; unk 99.0 7.3E-08 2.5E-12 96.0 22.1 183 186-397 7-239 (350)
97 2fna_A Conserved hypothetical 98.9 1.7E-08 6E-13 100.7 17.2 180 186-398 8-244 (357)
98 2kjq_A DNAA-related protein; s 98.9 1.3E-09 4.5E-14 96.4 7.5 104 225-359 36-145 (149)
99 2w58_A DNAI, primosome compone 98.9 2.3E-09 8E-14 99.0 8.1 99 187-296 21-127 (202)
100 4akg_A Glutathione S-transfera 98.8 2.5E-07 8.5E-12 113.5 24.8 127 225-372 645-790 (2695)
101 2vhj_A Ntpase P4, P4; non- hyd 98.8 1.4E-09 4.7E-14 107.5 2.7 121 222-347 120-242 (331)
102 2qgz_A Helicase loader, putati 98.7 1E-08 3.6E-13 101.6 6.9 97 188-296 121-226 (308)
103 3h43_A Proteasome-activating n 98.7 2.1E-08 7.1E-13 79.4 7.2 74 98-171 4-77 (85)
104 2r2a_A Uncharacterized protein 98.7 2.1E-08 7E-13 93.1 8.1 127 227-365 7-156 (199)
105 1svm_A Large T antigen; AAA+ f 98.6 3E-08 1E-12 100.8 5.5 119 221-361 165-284 (377)
106 1tue_A Replication protein E1; 98.6 8.3E-08 2.8E-12 88.7 7.6 113 223-362 56-179 (212)
107 3vkg_A Dynein heavy chain, cyt 98.5 4.5E-07 1.5E-11 112.0 13.3 139 225-377 1304-1471(3245)
108 1ye8_A Protein THEP1, hypothet 98.5 6.1E-07 2.1E-11 81.6 10.9 122 228-366 3-167 (178)
109 3cmu_A Protein RECA, recombina 98.4 2.8E-07 9.5E-12 109.8 8.8 125 212-336 1411-1560(2050)
110 3vkg_A Dynein heavy chain, cyt 98.4 1.8E-05 6E-10 98.1 22.8 126 225-371 604-749 (3245)
111 1u0j_A DNA replication protein 98.3 7E-07 2.4E-11 86.0 7.5 118 225-372 104-248 (267)
112 1jr3_D DNA polymerase III, del 98.3 5.3E-06 1.8E-10 83.0 13.6 129 225-381 18-161 (343)
113 2w0m_A SSO2452; RECA, SSPF, un 97.9 2.4E-05 8.2E-10 72.8 8.6 36 222-257 20-58 (235)
114 3hr8_A Protein RECA; alpha and 97.9 1.7E-05 5.7E-10 79.8 7.9 117 222-338 58-196 (356)
115 1n0w_A DNA repair protein RAD5 97.9 3.4E-05 1.2E-09 72.5 9.2 78 221-298 20-133 (243)
116 2cvh_A DNA repair and recombin 97.9 2.6E-05 8.8E-10 72.2 8.1 38 222-259 17-54 (220)
117 2ehv_A Hypothetical protein PH 97.9 4.1E-05 1.4E-09 72.3 9.6 114 221-343 26-185 (251)
118 1xp8_A RECA protein, recombina 97.9 3.9E-05 1.3E-09 77.6 9.7 118 221-338 70-209 (366)
119 1z6t_A APAF-1, apoptotic prote 97.8 0.0002 7E-09 76.6 15.5 170 189-398 122-322 (591)
120 2zr9_A Protein RECA, recombina 97.8 1.5E-05 5.1E-10 80.2 6.1 78 221-298 57-153 (349)
121 3cmu_A Protein RECA, recombina 97.8 1.3E-05 4.5E-10 95.6 5.2 130 210-339 714-868 (2050)
122 1g41_A Heat shock protein HSLU 97.8 8.8E-05 3E-09 76.6 10.6 99 270-372 238-346 (444)
123 3upu_A ATP-dependent DNA helic 97.8 7.2E-05 2.5E-09 77.9 9.9 58 178-249 11-69 (459)
124 2z43_A DNA repair and recombin 97.8 4.2E-05 1.4E-09 76.0 7.6 117 221-338 103-256 (324)
125 4a74_A DNA repair and recombin 97.7 5.1E-05 1.8E-09 70.6 7.4 29 221-249 21-49 (231)
126 3sfz_A APAF-1, apoptotic pepti 97.7 0.00032 1.1E-08 81.2 15.6 171 187-397 120-321 (1249)
127 1qhx_A CPT, protein (chloramph 97.7 3.6E-05 1.2E-09 68.9 5.6 38 226-263 4-41 (178)
128 1u94_A RECA protein, recombina 97.7 7.2E-05 2.5E-09 75.3 8.1 78 221-298 59-155 (356)
129 1v5w_A DMC1, meiotic recombina 97.7 4.4E-05 1.5E-09 76.5 6.3 118 221-339 118-273 (343)
130 3lda_A DNA repair protein RAD5 97.6 9.7E-05 3.3E-09 75.5 8.6 118 221-339 174-327 (400)
131 2orw_A Thymidine kinase; TMTK, 97.6 2.3E-05 7.9E-10 71.4 3.4 22 227-248 5-26 (184)
132 1pzn_A RAD51, DNA repair and r 97.6 0.00012 3.9E-09 73.6 8.5 29 221-249 127-155 (349)
133 3io5_A Recombination and repai 97.5 0.00015 5.3E-09 71.3 7.5 77 222-299 26-126 (333)
134 3m9b_A Proteasome-associated A 97.5 0.00025 8.5E-09 66.4 8.5 79 93-173 79-157 (251)
135 2b8t_A Thymidine kinase; deoxy 97.5 0.00024 8.1E-09 66.7 8.5 69 228-296 15-101 (223)
136 3jvv_A Twitching mobility prot 97.5 0.00026 9E-09 71.2 9.3 96 227-343 125-234 (356)
137 2i1q_A DNA repair and recombin 97.4 0.00016 5.3E-09 71.6 6.7 28 221-248 94-121 (322)
138 2dr3_A UPF0273 protein PH0284; 97.4 0.00053 1.8E-08 64.3 10.0 38 221-258 19-59 (247)
139 2a5y_B CED-4; apoptosis; HET: 97.4 0.0016 5.6E-08 69.2 14.8 145 194-376 131-307 (549)
140 3vaa_A Shikimate kinase, SK; s 97.4 0.0001 3.6E-09 67.5 4.7 40 224-265 24-63 (199)
141 3trf_A Shikimate kinase, SK; a 97.4 0.00011 3.8E-09 66.2 4.5 41 225-267 5-45 (185)
142 2rhm_A Putative kinase; P-loop 97.3 0.00016 5.3E-09 65.4 4.6 33 223-255 3-35 (193)
143 2iut_A DNA translocase FTSK; n 97.3 0.0027 9.4E-08 67.3 14.7 74 286-372 345-420 (574)
144 1nlf_A Regulatory protein REPA 97.3 0.00028 9.7E-09 68.2 6.7 28 221-248 26-53 (279)
145 1zp6_A Hypothetical protein AT 97.3 0.00014 5E-09 65.7 4.1 41 222-262 6-46 (191)
146 2p5t_B PEZT; postsegregational 97.3 0.00071 2.4E-08 64.5 9.0 39 223-261 30-68 (253)
147 2i3b_A HCR-ntpase, human cance 97.3 0.00022 7.6E-09 65.1 5.2 23 227-249 3-25 (189)
148 3kb2_A SPBC2 prophage-derived 97.2 0.00019 6.6E-09 63.4 4.2 31 227-257 3-33 (173)
149 2eyu_A Twitching motility prot 97.2 0.00013 4.5E-09 70.2 3.2 70 224-293 24-107 (261)
150 1kag_A SKI, shikimate kinase I 97.2 0.00025 8.5E-09 63.0 4.7 35 226-262 5-39 (173)
151 2r8r_A Sensor protein; KDPD, P 97.2 0.0024 8.3E-08 59.7 11.6 120 227-365 8-168 (228)
152 1via_A Shikimate kinase; struc 97.2 0.00021 7.1E-09 63.9 4.2 34 227-262 6-39 (175)
153 3iij_A Coilin-interacting nucl 97.2 0.00029 9.8E-09 63.2 4.9 31 225-255 11-41 (180)
154 1gvn_B Zeta; postsegregational 97.2 0.00039 1.3E-08 67.8 6.1 39 224-262 32-70 (287)
155 1y63_A LMAJ004144AAA protein; 97.2 0.00019 6.6E-09 64.9 3.4 31 225-255 10-41 (184)
156 2ewv_A Twitching motility prot 97.2 0.00034 1.2E-08 70.8 5.5 77 217-293 128-218 (372)
157 2iyv_A Shikimate kinase, SK; t 97.1 0.00031 1.1E-08 63.1 4.5 35 227-263 4-38 (184)
158 2ius_A DNA translocase FTSK; n 97.1 0.0019 6.5E-08 67.9 10.7 75 285-372 297-374 (512)
159 1zuh_A Shikimate kinase; alpha 97.1 0.00039 1.3E-08 61.6 4.3 36 227-264 9-44 (168)
160 2ze6_A Isopentenyl transferase 97.1 0.00032 1.1E-08 67.0 4.0 32 228-259 4-35 (253)
161 4gp7_A Metallophosphoesterase; 97.0 0.00036 1.2E-08 62.4 3.8 20 225-244 9-28 (171)
162 1e6c_A Shikimate kinase; phosp 97.0 0.00044 1.5E-08 61.2 4.2 35 227-263 4-38 (173)
163 3lw7_A Adenylate kinase relate 97.0 0.00045 1.5E-08 60.9 4.1 28 228-256 4-31 (179)
164 4g1u_C Hemin import ATP-bindin 97.0 0.0011 3.8E-08 63.9 7.1 45 284-341 165-209 (266)
165 2cbz_A Multidrug resistance-as 97.0 0.0016 5.5E-08 61.5 8.1 27 223-249 29-55 (237)
166 2cdn_A Adenylate kinase; phosp 97.0 0.00056 1.9E-08 62.5 4.8 31 225-255 20-50 (201)
167 3t61_A Gluconokinase; PSI-biol 97.0 0.00053 1.8E-08 62.7 4.5 31 225-255 18-48 (202)
168 3tui_C Methionine import ATP-b 97.0 0.00057 1.9E-08 68.8 5.0 52 277-341 174-225 (366)
169 1tev_A UMP-CMP kinase; ploop, 97.0 0.00049 1.7E-08 62.0 4.2 35 226-262 4-38 (196)
170 1qf9_A UMP/CMP kinase, protein 97.0 0.00058 2E-08 61.4 4.5 37 225-263 6-42 (194)
171 2c95_A Adenylate kinase 1; tra 97.0 0.00058 2E-08 61.7 4.5 37 225-263 9-45 (196)
172 3cm0_A Adenylate kinase; ATP-b 96.9 0.00049 1.7E-08 61.8 3.9 34 227-262 6-39 (186)
173 1aky_A Adenylate kinase; ATP:A 96.9 0.00059 2E-08 63.3 4.6 31 225-255 4-34 (220)
174 2zts_A Putative uncharacterize 96.9 0.0026 8.7E-08 59.6 9.0 37 221-257 26-66 (251)
175 2r6a_A DNAB helicase, replicat 96.9 0.0016 5.5E-08 67.6 8.3 37 221-257 199-239 (454)
176 3rlf_A Maltose/maltodextrin im 96.9 0.0004 1.4E-08 70.4 3.5 25 225-249 29-53 (381)
177 4eun_A Thermoresistant glucoki 96.9 0.00064 2.2E-08 62.2 4.6 35 225-261 29-63 (200)
178 2vli_A Antibiotic resistance p 96.9 0.00046 1.6E-08 61.8 3.5 29 226-254 6-34 (183)
179 1ly1_A Polynucleotide kinase; 96.9 0.00042 1.4E-08 61.7 3.2 34 226-261 3-37 (181)
180 1knq_A Gluconate kinase; ALFA/ 96.9 0.00064 2.2E-08 60.5 4.3 30 226-255 9-38 (175)
181 3gfo_A Cobalt import ATP-bindi 96.9 0.00041 1.4E-08 67.2 3.1 53 278-343 155-207 (275)
182 1zd8_A GTP:AMP phosphotransfer 96.9 0.00064 2.2E-08 63.5 4.3 31 225-255 7-37 (227)
183 3umf_A Adenylate kinase; rossm 96.9 0.00065 2.2E-08 63.4 4.3 40 223-264 27-66 (217)
184 3dl0_A Adenylate kinase; phosp 96.9 0.00065 2.2E-08 62.8 4.3 29 228-256 3-31 (216)
185 2pt5_A Shikimate kinase, SK; a 96.9 0.00069 2.4E-08 59.7 4.3 35 228-264 3-37 (168)
186 3fb4_A Adenylate kinase; psych 96.9 0.00068 2.3E-08 62.5 4.3 29 228-256 3-31 (216)
187 2bwj_A Adenylate kinase 5; pho 96.9 0.0007 2.4E-08 61.3 4.3 36 225-262 12-47 (199)
188 2pez_A Bifunctional 3'-phospho 96.9 0.00095 3.2E-08 59.7 5.0 37 225-261 5-44 (179)
189 1kht_A Adenylate kinase; phosp 96.9 0.0006 2E-08 61.3 3.7 25 226-250 4-28 (192)
190 3cmw_A Protein RECA, recombina 96.9 0.0015 5.1E-08 77.3 8.0 127 212-338 1415-1566(1706)
191 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.0022 7.5E-08 63.8 8.0 70 225-294 171-250 (330)
192 1ak2_A Adenylate kinase isoenz 96.8 0.00091 3.1E-08 62.7 4.7 30 226-255 17-46 (233)
193 1zak_A Adenylate kinase; ATP:A 96.8 0.00068 2.3E-08 63.0 3.8 31 225-255 5-35 (222)
194 3uie_A Adenylyl-sulfate kinase 96.8 0.0011 3.8E-08 60.6 5.1 38 224-261 24-64 (200)
195 3sr0_A Adenylate kinase; phosp 96.8 0.00082 2.8E-08 62.2 4.1 33 228-262 3-35 (206)
196 3e1s_A Exodeoxyribonuclease V, 96.8 0.0014 4.9E-08 70.1 6.5 71 226-296 205-291 (574)
197 1nks_A Adenylate kinase; therm 96.8 0.00093 3.2E-08 60.0 4.3 34 228-261 4-40 (194)
198 3be4_A Adenylate kinase; malar 96.8 0.00079 2.7E-08 62.5 3.9 36 226-263 6-41 (217)
199 3tlx_A Adenylate kinase 2; str 96.8 0.00091 3.1E-08 63.4 4.4 38 224-263 28-65 (243)
200 1ukz_A Uridylate kinase; trans 96.8 0.00097 3.3E-08 60.9 4.4 36 226-263 16-51 (203)
201 3thx_B DNA mismatch repair pro 96.8 0.003 1E-07 70.9 9.2 23 225-247 673-695 (918)
202 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.0013 4.4E-08 63.0 5.4 38 226-263 5-45 (260)
203 2bbw_A Adenylate kinase 4, AK4 96.7 0.001 3.5E-08 62.9 4.4 30 225-254 27-56 (246)
204 3crm_A TRNA delta(2)-isopenten 96.7 0.001 3.4E-08 65.8 4.3 35 225-259 5-39 (323)
205 2fz4_A DNA repair protein RAD2 96.7 0.0039 1.3E-07 58.7 8.2 33 227-259 110-142 (237)
206 3dm5_A SRP54, signal recogniti 96.7 0.0053 1.8E-07 63.2 9.7 72 225-296 100-194 (443)
207 1vma_A Cell division protein F 96.7 0.017 5.8E-07 56.6 12.9 73 223-295 102-197 (306)
208 1e4v_A Adenylate kinase; trans 96.7 0.0011 3.9E-08 61.1 4.2 29 228-256 3-31 (214)
209 1cke_A CK, MSSA, protein (cyti 96.7 0.0011 3.9E-08 61.4 4.2 35 226-262 6-40 (227)
210 3fvq_A Fe(3+) IONS import ATP- 96.7 0.0011 3.9E-08 66.5 4.3 25 225-249 30-54 (359)
211 2jaq_A Deoxyguanosine kinase; 96.7 0.0011 3.8E-08 60.2 3.9 28 228-255 3-30 (205)
212 1jjv_A Dephospho-COA kinase; P 96.6 0.0022 7.5E-08 58.6 6.0 33 227-262 4-36 (206)
213 2pbr_A DTMP kinase, thymidylat 96.6 0.0015 5E-08 58.8 4.6 30 228-257 3-35 (195)
214 2q6t_A DNAB replication FORK h 96.6 0.0043 1.5E-07 64.1 8.6 38 221-258 196-237 (444)
215 2if2_A Dephospho-COA kinase; a 96.6 0.0031 1.1E-07 57.5 6.7 49 227-278 3-51 (204)
216 1g5t_A COB(I)alamin adenosyltr 96.6 0.012 4E-07 53.8 10.3 116 227-360 30-178 (196)
217 4a1f_A DNAB helicase, replicat 96.6 0.023 7.7E-07 56.5 13.3 37 221-257 42-81 (338)
218 1vt4_I APAF-1 related killer D 96.6 0.0065 2.2E-07 68.6 10.0 43 194-248 131-173 (1221)
219 3kl4_A SRP54, signal recogniti 96.6 0.014 4.7E-07 60.0 11.9 72 225-296 97-191 (433)
220 2xb4_A Adenylate kinase; ATP-b 96.6 0.0014 4.9E-08 61.0 4.2 34 228-263 3-36 (223)
221 3nwj_A ATSK2; P loop, shikimat 96.5 0.0012 4.2E-08 62.9 3.6 31 225-255 48-78 (250)
222 3nh6_A ATP-binding cassette SU 96.5 0.0076 2.6E-07 59.1 9.2 27 223-249 78-104 (306)
223 3r20_A Cytidylate kinase; stru 96.5 0.0018 6.2E-08 61.1 4.4 35 225-261 9-43 (233)
224 1tf7_A KAIC; homohexamer, hexa 96.5 0.013 4.4E-07 61.9 11.4 113 222-343 36-188 (525)
225 2v54_A DTMP kinase, thymidylat 96.5 0.002 6.8E-08 58.6 4.5 33 225-257 4-37 (204)
226 2yyz_A Sugar ABC transporter, 96.5 0.0057 1.9E-07 61.4 8.2 26 224-249 28-53 (359)
227 3ake_A Cytidylate kinase; CMP 96.5 0.0019 6.3E-08 58.9 4.2 30 227-256 4-33 (208)
228 2ga8_A Hypothetical 39.9 kDa p 96.5 0.0016 5.6E-08 65.0 4.0 53 194-255 2-54 (359)
229 2z0h_A DTMP kinase, thymidylat 96.5 0.0022 7.4E-08 57.9 4.6 29 228-256 3-34 (197)
230 1q57_A DNA primase/helicase; d 96.5 0.0097 3.3E-07 62.4 10.2 38 221-258 238-279 (503)
231 2qor_A Guanylate kinase; phosp 96.5 0.0025 8.4E-08 58.4 5.0 28 223-250 10-37 (204)
232 1tf7_A KAIC; homohexamer, hexa 96.5 0.007 2.4E-07 63.9 9.2 110 221-340 277-417 (525)
233 3bh0_A DNAB-like replicative h 96.5 0.008 2.7E-07 59.1 9.0 37 221-257 64-103 (315)
234 3thx_A DNA mismatch repair pro 96.3 0.0077 2.6E-07 67.8 8.9 22 226-247 663-684 (934)
235 2wwf_A Thymidilate kinase, put 96.3 0.0011 3.9E-08 60.6 1.8 29 225-253 10-38 (212)
236 4e22_A Cytidylate kinase; P-lo 96.3 0.003 1E-07 60.1 4.7 35 226-262 28-62 (252)
237 1uf9_A TT1252 protein; P-loop, 96.3 0.0027 9.1E-08 57.6 4.2 35 225-262 8-42 (203)
238 1kgd_A CASK, peripheral plasma 96.3 0.0026 9E-08 57.0 4.0 25 226-250 6-30 (180)
239 2grj_A Dephospho-COA kinase; T 96.3 0.0027 9.3E-08 58.0 4.1 33 228-262 15-47 (192)
240 1nn5_A Similar to deoxythymidy 96.3 0.0013 4.6E-08 60.2 2.0 27 225-251 9-35 (215)
241 2plr_A DTMP kinase, probable t 96.2 0.0022 7.7E-08 58.4 3.4 27 226-252 5-31 (213)
242 2j41_A Guanylate kinase; GMP, 96.2 0.0028 9.6E-08 57.7 3.7 26 224-249 5-30 (207)
243 3foz_A TRNA delta(2)-isopenten 96.1 0.0027 9.4E-08 62.2 3.6 34 225-258 10-43 (316)
244 2bdt_A BH3686; alpha-beta prot 96.1 0.0035 1.2E-07 56.4 4.1 33 228-261 5-37 (189)
245 3a8t_A Adenylate isopentenyltr 96.1 0.0022 7.5E-08 63.7 2.8 34 226-259 41-74 (339)
246 3qf4_B Uncharacterized ABC tra 96.1 0.017 5.7E-07 62.1 9.9 28 222-249 378-405 (598)
247 2yvu_A Probable adenylyl-sulfa 96.1 0.0059 2E-07 54.8 5.3 37 225-261 13-52 (186)
248 4f4c_A Multidrug resistance pr 96.1 0.009 3.1E-07 70.1 8.1 28 223-250 442-469 (1321)
249 1m7g_A Adenylylsulfate kinase; 96.1 0.0041 1.4E-07 57.2 4.3 39 224-262 24-66 (211)
250 2h92_A Cytidylate kinase; ross 96.1 0.0045 1.5E-07 57.0 4.6 30 226-255 4-33 (219)
251 1vht_A Dephospho-COA kinase; s 96.1 0.0042 1.5E-07 57.3 4.4 34 226-262 5-38 (218)
252 1q3t_A Cytidylate kinase; nucl 96.1 0.0046 1.6E-07 58.0 4.7 37 224-262 15-51 (236)
253 1ex7_A Guanylate kinase; subst 96.1 0.0041 1.4E-07 56.5 4.2 27 227-253 3-29 (186)
254 3tau_A Guanylate kinase, GMP k 96.1 0.0041 1.4E-07 57.2 4.2 27 225-251 8-34 (208)
255 1rz3_A Hypothetical protein rb 96.1 0.012 4.3E-07 53.5 7.5 33 225-257 22-57 (201)
256 3c8u_A Fructokinase; YP_612366 96.1 0.0056 1.9E-07 56.2 5.1 26 225-250 22-47 (208)
257 1uj2_A Uridine-cytidine kinase 96.1 0.0051 1.7E-07 58.3 4.9 38 225-262 22-67 (252)
258 1w4r_A Thymidine kinase; type 96.0 0.048 1.6E-06 49.7 11.0 31 228-258 23-56 (195)
259 2qt1_A Nicotinamide riboside k 96.0 0.0031 1.1E-07 57.7 3.1 30 225-254 21-51 (207)
260 4a82_A Cystic fibrosis transme 96.0 0.011 3.6E-07 63.4 7.6 27 223-249 365-391 (578)
261 3tr0_A Guanylate kinase, GMP k 96.0 0.0043 1.5E-07 56.3 3.9 26 225-250 7-32 (205)
262 3b5x_A Lipid A export ATP-bind 95.9 0.019 6.6E-07 61.3 9.4 27 223-249 367-393 (582)
263 3d3q_A TRNA delta(2)-isopenten 95.9 0.0036 1.2E-07 62.2 3.4 33 226-258 8-40 (340)
264 2xau_A PRE-mRNA-splicing facto 95.9 0.014 4.7E-07 64.7 8.3 63 184-248 68-132 (773)
265 3exa_A TRNA delta(2)-isopenten 95.9 0.0039 1.3E-07 61.2 3.4 33 227-259 5-37 (322)
266 3bgw_A DNAB-like replicative h 95.9 0.038 1.3E-06 57.0 11.1 38 221-258 193-233 (444)
267 3a00_A Guanylate kinase, GMP k 95.9 0.0044 1.5E-07 55.9 3.5 25 226-250 2-26 (186)
268 1p9r_A General secretion pathw 95.9 0.015 5.1E-07 59.6 7.8 66 227-293 169-245 (418)
269 1lvg_A Guanylate kinase, GMP k 95.9 0.0043 1.5E-07 56.7 3.4 26 225-250 4-29 (198)
270 1htw_A HI0065; nucleotide-bind 95.9 0.0052 1.8E-07 54.2 3.8 27 223-249 31-57 (158)
271 1xx6_A Thymidine kinase; NESG, 95.9 0.02 7E-07 52.0 8.0 69 227-296 10-93 (191)
272 3asz_A Uridine kinase; cytidin 95.8 0.0044 1.5E-07 56.8 3.3 26 225-250 6-31 (211)
273 2oap_1 GSPE-2, type II secreti 95.8 0.0056 1.9E-07 64.5 4.4 69 225-293 260-342 (511)
274 1wb9_A DNA mismatch repair pro 95.8 0.034 1.2E-06 61.6 10.8 23 226-248 608-630 (800)
275 1ltq_A Polynucleotide kinase; 95.8 0.0049 1.7E-07 59.8 3.6 35 226-262 3-38 (301)
276 4f4c_A Multidrug resistance pr 95.8 0.022 7.5E-07 66.8 9.7 27 223-249 1103-1129(1321)
277 3llm_A ATP-dependent RNA helic 95.8 0.029 9.9E-07 52.4 8.8 22 225-246 76-97 (235)
278 3ney_A 55 kDa erythrocyte memb 95.8 0.008 2.7E-07 55.1 4.8 26 225-250 19-44 (197)
279 1z6g_A Guanylate kinase; struc 95.8 0.0056 1.9E-07 56.8 3.7 27 223-249 21-47 (218)
280 3fdi_A Uncharacterized protein 95.8 0.0064 2.2E-07 55.8 4.1 29 227-255 8-36 (201)
281 3ozx_A RNAse L inhibitor; ATP 95.7 0.017 5.9E-07 61.1 7.7 50 277-341 149-198 (538)
282 2f6r_A COA synthase, bifunctio 95.7 0.0066 2.3E-07 58.7 4.1 35 225-262 75-109 (281)
283 1znw_A Guanylate kinase, GMP k 95.7 0.0064 2.2E-07 55.8 3.7 28 223-250 18-45 (207)
284 2qmh_A HPR kinase/phosphorylas 95.7 0.0044 1.5E-07 56.8 2.5 30 225-255 34-63 (205)
285 3b60_A Lipid A export ATP-bind 95.7 0.015 5.3E-07 62.1 7.2 27 223-249 367-393 (582)
286 3qf4_A ABC transporter, ATP-bi 95.7 0.031 1.1E-06 59.8 9.5 27 223-249 367-393 (587)
287 2gxq_A Heat resistant RNA depe 95.6 0.053 1.8E-06 49.0 9.8 24 225-248 38-62 (207)
288 2axn_A 6-phosphofructo-2-kinas 95.6 0.031 1E-06 59.0 9.1 40 225-264 35-77 (520)
289 3zvl_A Bifunctional polynucleo 95.6 0.0049 1.7E-07 63.2 2.9 30 225-254 258-287 (416)
290 4aby_A DNA repair protein RECN 95.6 0.05 1.7E-06 55.2 10.4 23 227-249 62-84 (415)
291 2px0_A Flagellar biosynthesis 95.6 0.024 8.3E-07 55.2 7.6 35 224-258 104-142 (296)
292 1ewq_A DNA mismatch repair pro 95.5 0.035 1.2E-06 61.2 9.3 23 226-248 577-599 (765)
293 3j16_B RLI1P; ribosome recycli 95.5 0.04 1.4E-06 59.2 9.5 25 225-249 103-127 (608)
294 3eph_A TRNA isopentenyltransfe 95.5 0.0068 2.3E-07 61.6 3.3 33 226-258 3-35 (409)
295 2v9p_A Replication protein E1; 95.5 0.0089 3E-07 58.6 4.0 29 222-250 123-151 (305)
296 2jeo_A Uridine-cytidine kinase 95.4 0.0085 2.9E-07 56.5 3.5 26 227-252 27-52 (245)
297 1s96_A Guanylate kinase, GMP k 95.4 0.0097 3.3E-07 55.4 3.7 28 223-250 14-41 (219)
298 3b9q_A Chloroplast SRP recepto 95.3 0.01 3.6E-07 58.1 4.0 27 223-249 98-124 (302)
299 3ozx_A RNAse L inhibitor; ATP 95.2 0.031 1.1E-06 59.2 7.5 54 275-341 394-447 (538)
300 1cr0_A DNA primase/helicase; R 95.2 0.011 3.6E-07 57.4 3.6 29 221-249 31-59 (296)
301 1x6v_B Bifunctional 3'-phospho 95.2 0.014 4.7E-07 62.8 4.7 37 225-261 52-91 (630)
302 2j37_W Signal recognition part 95.2 0.029 9.9E-07 58.8 7.0 35 224-258 100-137 (504)
303 1gtv_A TMK, thymidylate kinase 95.1 0.0051 1.7E-07 56.3 1.0 24 228-251 3-26 (214)
304 2og2_A Putative signal recogni 95.1 0.012 4.3E-07 58.9 4.0 27 223-249 155-181 (359)
305 2v3c_C SRP54, signal recogniti 95.1 0.03 1E-06 57.6 6.9 34 225-258 99-135 (432)
306 4b3f_X DNA-binding protein smu 95.1 0.095 3.2E-06 56.7 11.1 50 196-260 191-243 (646)
307 2iw3_A Elongation factor 3A; a 95.1 0.033 1.1E-06 62.8 7.4 24 224-247 460-483 (986)
308 3gmt_A Adenylate kinase; ssgci 95.1 0.015 5.2E-07 54.5 4.0 34 228-263 11-44 (230)
309 3lnc_A Guanylate kinase, GMP k 95.0 0.0069 2.4E-07 56.5 1.5 25 225-249 27-52 (231)
310 3b6e_A Interferon-induced heli 95.0 0.033 1.1E-06 50.5 6.0 23 226-248 49-71 (216)
311 2o8b_B DNA mismatch repair pro 94.9 0.066 2.3E-06 60.9 9.7 21 226-246 790-810 (1022)
312 3hdt_A Putative kinase; struct 94.9 0.016 5.5E-07 54.1 3.8 29 227-255 16-44 (223)
313 1odf_A YGR205W, hypothetical 3 94.9 0.028 9.6E-07 54.6 5.7 27 224-250 30-56 (290)
314 3tif_A Uncharacterized ABC tra 94.9 0.0094 3.2E-07 56.1 2.0 27 223-249 29-55 (235)
315 2j9r_A Thymidine kinase; TK1, 94.8 0.058 2E-06 49.9 7.3 29 228-256 31-62 (214)
316 1j8m_F SRP54, signal recogniti 94.8 0.056 1.9E-06 52.7 7.5 72 225-296 98-192 (297)
317 1a7j_A Phosphoribulokinase; tr 94.7 0.013 4.3E-07 57.1 2.7 35 227-261 7-44 (290)
318 1t6n_A Probable ATP-dependent 94.7 0.25 8.7E-06 45.0 11.6 24 225-248 51-74 (220)
319 1c9k_A COBU, adenosylcobinamid 94.7 0.018 6E-07 52.0 3.4 31 228-259 2-32 (180)
320 4eaq_A DTMP kinase, thymidylat 94.7 0.019 6.5E-07 53.7 3.8 25 226-250 27-51 (229)
321 3kta_A Chromosome segregation 94.7 0.018 6.1E-07 51.3 3.4 25 227-251 28-52 (182)
322 3iuy_A Probable ATP-dependent 94.7 0.12 4.2E-06 47.4 9.3 19 225-243 57-75 (228)
323 3aez_A Pantothenate kinase; tr 94.7 0.018 6.1E-07 56.6 3.6 27 224-250 89-115 (312)
324 2pcj_A ABC transporter, lipopr 94.6 0.012 4.1E-07 55.0 2.0 26 224-249 29-54 (224)
325 2yhs_A FTSY, cell division pro 94.6 0.016 5.4E-07 60.4 3.1 26 224-249 292-317 (503)
326 3b85_A Phosphate starvation-in 94.5 0.016 5.3E-07 53.5 2.7 23 226-248 23-45 (208)
327 1hv8_A Putative ATP-dependent 94.5 0.18 6E-06 49.4 10.6 24 225-248 44-67 (367)
328 2onk_A Molybdate/tungstate ABC 94.5 0.016 5.3E-07 54.8 2.6 27 222-249 22-48 (240)
329 1b0u_A Histidine permease; ABC 94.5 0.014 4.7E-07 55.9 2.3 28 223-250 30-57 (262)
330 1m8p_A Sulfate adenylyltransfe 94.4 0.025 8.6E-07 60.3 4.4 37 226-262 397-437 (573)
331 1sq5_A Pantothenate kinase; P- 94.4 0.021 7.1E-07 56.0 3.3 26 225-250 80-105 (308)
332 3e70_C DPA, signal recognition 94.4 0.044 1.5E-06 54.2 5.6 27 223-249 127-153 (328)
333 1rj9_A FTSY, signal recognitio 94.3 0.024 8.2E-07 55.5 3.7 25 225-249 102-126 (304)
334 3tqf_A HPR(Ser) kinase; transf 94.3 0.021 7.2E-07 51.1 2.9 24 225-248 16-39 (181)
335 1mv5_A LMRA, multidrug resista 94.3 0.015 5E-07 55.0 2.0 27 223-249 26-52 (243)
336 1np6_A Molybdopterin-guanine d 94.3 0.027 9.3E-07 50.4 3.7 25 225-249 6-30 (174)
337 2c9o_A RUVB-like 1; hexameric 94.3 0.00025 8.7E-09 73.7 -11.3 67 330-405 190-260 (456)
338 1g6h_A High-affinity branched- 94.2 0.014 4.7E-07 55.7 1.7 47 283-343 170-216 (257)
339 2zu0_C Probable ATP-dependent 94.2 0.022 7.6E-07 54.6 3.1 26 223-248 44-69 (267)
340 1sgw_A Putative ABC transporte 94.2 0.017 5.7E-07 53.6 2.2 26 224-249 34-59 (214)
341 2olj_A Amino acid ABC transpor 94.2 0.017 5.7E-07 55.4 2.3 27 223-249 48-74 (263)
342 3tqc_A Pantothenate kinase; bi 94.2 0.03 1E-06 55.2 4.1 26 225-250 92-117 (321)
343 2ghi_A Transport protein; mult 94.2 0.017 5.8E-07 55.2 2.2 27 223-249 44-70 (260)
344 2ixe_A Antigen peptide transpo 94.2 0.017 5.8E-07 55.6 2.2 27 223-249 43-69 (271)
345 3ux8_A Excinuclease ABC, A sub 94.2 0.049 1.7E-06 59.2 6.1 54 285-359 565-618 (670)
346 3e2i_A Thymidine kinase; Zn-bi 94.1 0.03 1E-06 51.9 3.6 20 228-247 31-51 (219)
347 2pze_A Cystic fibrosis transme 94.1 0.015 5.3E-07 54.3 1.7 27 223-249 32-58 (229)
348 2d2e_A SUFC protein; ABC-ATPas 94.1 0.018 6.1E-07 54.7 2.2 25 224-248 28-52 (250)
349 3g5u_A MCG1178, multidrug resi 94.1 0.091 3.1E-06 61.4 8.5 27 224-250 415-441 (1284)
350 3vkw_A Replicase large subunit 94.1 0.052 1.8E-06 55.7 5.8 24 225-248 161-184 (446)
351 1vpl_A ABC transporter, ATP-bi 94.1 0.019 6.4E-07 54.8 2.3 27 223-249 39-65 (256)
352 2xxa_A Signal recognition part 94.1 0.072 2.5E-06 54.7 6.8 73 224-296 99-195 (433)
353 1ji0_A ABC transporter; ATP bi 94.1 0.016 5.5E-07 54.7 1.7 26 224-249 31-56 (240)
354 2ff7_A Alpha-hemolysin translo 94.0 0.016 5.5E-07 54.9 1.7 26 224-249 34-59 (247)
355 2yz2_A Putative ABC transporte 94.0 0.019 6.5E-07 55.0 2.2 47 283-343 155-201 (266)
356 2ged_A SR-beta, signal recogni 94.0 0.057 1.9E-06 48.0 5.3 48 195-249 25-72 (193)
357 2it1_A 362AA long hypothetical 94.0 0.023 7.7E-07 57.1 2.6 25 225-249 29-53 (362)
358 3ice_A Transcription terminati 93.9 0.16 5.3E-06 51.3 8.6 25 225-249 174-198 (422)
359 3cr8_A Sulfate adenylyltranfer 93.9 0.023 7.8E-07 60.3 2.7 40 224-263 368-411 (552)
360 2qm8_A GTPase/ATPase; G protei 93.9 0.078 2.7E-06 52.5 6.5 25 225-249 55-79 (337)
361 2qi9_C Vitamin B12 import ATP- 93.9 0.02 7E-07 54.3 2.1 26 224-249 25-50 (249)
362 1v43_A Sugar-binding transport 93.9 0.024 8.2E-07 57.1 2.6 26 224-249 36-61 (372)
363 1oix_A RAS-related protein RAB 93.9 0.03 1E-06 50.3 3.1 22 228-249 32-53 (191)
364 1xjc_A MOBB protein homolog; s 93.8 0.033 1.1E-06 49.6 3.2 23 227-249 6-28 (169)
365 2ihy_A ABC transporter, ATP-bi 93.8 0.019 6.6E-07 55.5 1.7 26 224-249 46-71 (279)
366 1z47_A CYSA, putative ABC-tran 93.8 0.021 7.2E-07 57.1 2.1 25 225-249 41-65 (355)
367 3sop_A Neuronal-specific septi 93.8 0.029 9.9E-07 53.9 3.0 23 227-249 4-26 (270)
368 2nq2_C Hypothetical ABC transp 93.8 0.018 6.3E-07 54.7 1.5 26 224-249 30-55 (253)
369 2f9l_A RAB11B, member RAS onco 93.8 0.032 1.1E-06 50.3 3.1 22 227-248 7-28 (199)
370 3d31_A Sulfate/molybdate ABC t 93.7 0.02 6.8E-07 57.2 1.7 26 224-249 25-50 (348)
371 1s2m_A Putative ATP-dependent 93.7 0.23 7.8E-06 49.5 9.7 22 225-246 58-79 (400)
372 2dpy_A FLII, flagellum-specifi 93.6 0.07 2.4E-06 54.9 5.7 26 227-252 159-184 (438)
373 2ocp_A DGK, deoxyguanosine kin 93.6 0.044 1.5E-06 51.3 3.8 25 226-250 3-27 (241)
374 1g29_1 MALK, maltose transport 93.6 0.024 8.2E-07 57.1 2.1 25 225-249 29-53 (372)
375 2orv_A Thymidine kinase; TP4A 93.6 0.2 6.7E-06 46.8 8.1 20 228-247 22-41 (234)
376 2f1r_A Molybdopterin-guanine d 93.5 0.022 7.5E-07 50.9 1.5 24 227-250 4-27 (171)
377 3tbk_A RIG-I helicase domain; 93.5 0.51 1.8E-05 49.0 12.3 23 226-248 20-42 (555)
378 1lw7_A Transcriptional regulat 93.5 0.037 1.3E-06 55.5 3.2 28 225-252 170-197 (365)
379 1g8f_A Sulfate adenylyltransfe 93.5 0.054 1.8E-06 56.8 4.5 26 226-251 396-421 (511)
380 2gza_A Type IV secretion syste 93.4 0.034 1.2E-06 55.7 2.8 72 223-294 173-262 (361)
381 3gd7_A Fusion complex of cysti 93.4 0.031 1E-06 56.7 2.5 26 223-248 45-70 (390)
382 3g5u_A MCG1178, multidrug resi 93.4 0.097 3.3E-06 61.2 6.9 27 223-249 1057-1083(1284)
383 3p32_A Probable GTPase RV1496/ 93.4 0.1 3.4E-06 52.1 6.2 25 225-249 79-103 (355)
384 2pjz_A Hypothetical protein ST 93.3 0.03 1E-06 53.6 2.1 25 225-249 30-54 (263)
385 2j0s_A ATP-dependent RNA helic 93.3 0.37 1.3E-05 48.2 10.4 21 225-245 74-94 (410)
386 2dyk_A GTP-binding protein; GT 93.3 0.047 1.6E-06 46.7 3.2 22 227-248 3-24 (161)
387 1oxx_K GLCV, glucose, ABC tran 93.3 0.021 7.1E-07 57.2 1.0 26 224-249 30-55 (353)
388 3eiq_A Eukaryotic initiation f 93.2 0.31 1.1E-05 48.7 9.7 19 225-243 77-95 (414)
389 1f2t_A RAD50 ABC-ATPase; DNA d 93.2 0.045 1.5E-06 47.5 3.0 22 228-249 26-47 (149)
390 2bbs_A Cystic fibrosis transme 93.2 0.035 1.2E-06 54.0 2.5 27 223-249 62-88 (290)
391 1p5z_B DCK, deoxycytidine kina 93.2 0.022 7.5E-07 54.2 0.9 25 226-250 25-49 (263)
392 3pey_A ATP-dependent RNA helic 93.1 0.27 9.2E-06 48.6 9.0 21 225-245 44-64 (395)
393 1z2a_A RAS-related protein RAB 93.1 0.05 1.7E-06 46.8 3.1 22 227-248 7-28 (168)
394 2zej_A Dardarin, leucine-rich 93.1 0.039 1.4E-06 49.0 2.5 20 228-247 5-24 (184)
395 2wji_A Ferrous iron transport 93.1 0.047 1.6E-06 47.5 2.9 22 227-248 5-26 (165)
396 2gk6_A Regulator of nonsense t 93.1 0.083 2.8E-06 56.9 5.4 22 227-248 197-218 (624)
397 1zu4_A FTSY; GTPase, signal re 93.0 0.046 1.6E-06 53.9 3.0 35 223-257 103-140 (320)
398 1bif_A 6-phosphofructo-2-kinas 93.0 0.03 1E-06 58.2 1.7 37 225-261 39-78 (469)
399 1nrj_B SR-beta, signal recogni 93.0 0.062 2.1E-06 48.9 3.7 25 225-249 12-36 (218)
400 1kao_A RAP2A; GTP-binding prot 93.0 0.055 1.9E-06 46.4 3.2 22 227-248 5-26 (167)
401 2npi_A Protein CLP1; CLP1-PCF1 93.0 0.049 1.7E-06 56.5 3.2 28 222-249 135-162 (460)
402 2ce2_X GTPase HRAS; signaling 92.9 0.054 1.8E-06 46.3 3.0 22 227-248 5-26 (166)
403 2obl_A ESCN; ATPase, hydrolase 92.9 0.081 2.8E-06 52.7 4.6 26 227-252 73-98 (347)
404 4i1u_A Dephospho-COA kinase; s 92.8 0.079 2.7E-06 48.9 4.1 37 227-266 11-47 (210)
405 2wsm_A Hydrogenase expression/ 92.8 0.072 2.5E-06 48.6 3.9 25 226-250 31-55 (221)
406 3ux8_A Excinuclease ABC, A sub 92.8 0.14 4.6E-06 55.7 6.6 50 278-341 214-265 (670)
407 1ek0_A Protein (GTP-binding pr 92.8 0.06 2E-06 46.4 3.1 22 227-248 5-26 (170)
408 4edh_A DTMP kinase, thymidylat 92.7 0.059 2E-06 49.8 3.2 23 228-250 9-31 (213)
409 1u8z_A RAS-related protein RAL 92.7 0.062 2.1E-06 46.1 3.1 22 227-248 6-27 (168)
410 2nzj_A GTP-binding protein REM 92.7 0.059 2E-06 46.8 3.0 21 227-247 6-26 (175)
411 2zj8_A DNA helicase, putative 92.7 0.51 1.7E-05 51.5 11.1 19 225-243 39-57 (720)
412 1z0j_A RAB-22, RAS-related pro 92.7 0.064 2.2E-06 46.2 3.2 23 227-249 8-30 (170)
413 1wms_A RAB-9, RAB9, RAS-relate 92.6 0.064 2.2E-06 46.7 3.2 22 227-248 9-30 (177)
414 1z08_A RAS-related protein RAB 92.6 0.065 2.2E-06 46.2 3.2 22 227-248 8-29 (170)
415 1g16_A RAS-related protein SEC 92.6 0.063 2.1E-06 46.3 3.0 22 227-248 5-26 (170)
416 3ljc_A ATP-dependent protease 92.6 0.05 1.7E-06 51.6 2.5 60 51-110 187-246 (252)
417 1ky3_A GTP-binding protein YPT 92.5 0.067 2.3E-06 46.7 3.2 23 226-248 9-31 (182)
418 3v9p_A DTMP kinase, thymidylat 92.5 0.055 1.9E-06 50.6 2.6 22 228-249 28-49 (227)
419 3tmk_A Thymidylate kinase; pho 92.5 0.1 3.6E-06 48.3 4.5 27 226-252 6-32 (216)
420 2wjg_A FEOB, ferrous iron tran 92.4 0.064 2.2E-06 47.4 2.9 22 227-248 9-30 (188)
421 1r8s_A ADP-ribosylation factor 92.4 0.071 2.4E-06 45.8 3.1 21 228-248 3-23 (164)
422 1c1y_A RAS-related protein RAP 92.4 0.071 2.4E-06 45.8 3.1 22 227-248 5-26 (167)
423 2p5s_A RAS and EF-hand domain 92.4 0.068 2.3E-06 48.0 3.1 24 225-248 28-51 (199)
424 2db3_A ATP-dependent RNA helic 92.4 0.68 2.3E-05 47.1 11.0 17 225-241 93-109 (434)
425 1pui_A ENGB, probable GTP-bind 92.4 0.034 1.2E-06 50.3 1.0 27 222-248 23-49 (210)
426 1r2q_A RAS-related protein RAB 92.4 0.071 2.4E-06 45.8 3.1 22 227-248 8-29 (170)
427 3q85_A GTP-binding protein REM 92.3 0.069 2.4E-06 46.1 2.9 20 228-247 5-24 (169)
428 3bc1_A RAS-related protein RAB 92.3 0.073 2.5E-06 46.9 3.1 22 227-248 13-34 (195)
429 2erx_A GTP-binding protein DI- 92.2 0.073 2.5E-06 45.9 3.0 21 227-247 5-25 (172)
430 2y8e_A RAB-protein 6, GH09086P 92.2 0.076 2.6E-06 46.2 3.0 22 227-248 16-37 (179)
431 3lv8_A DTMP kinase, thymidylat 92.1 0.075 2.6E-06 50.0 3.1 24 227-250 29-52 (236)
432 3q72_A GTP-binding protein RAD 92.1 0.068 2.3E-06 46.0 2.7 21 227-247 4-24 (166)
433 2qag_B Septin-6, protein NEDD5 92.1 0.078 2.7E-06 54.3 3.4 21 228-248 45-65 (427)
434 2gj8_A MNME, tRNA modification 92.1 0.073 2.5E-06 46.8 2.8 22 227-248 6-27 (172)
435 2fn4_A P23, RAS-related protei 92.1 0.079 2.7E-06 46.2 3.1 22 227-248 11-32 (181)
436 2hxs_A RAB-26, RAS-related pro 92.1 0.071 2.4E-06 46.5 2.7 22 227-248 8-29 (178)
437 1upt_A ARL1, ADP-ribosylation 92.1 0.091 3.1E-06 45.3 3.4 23 226-248 8-30 (171)
438 4dsu_A GTPase KRAS, isoform 2B 92.0 0.083 2.8E-06 46.5 3.2 22 227-248 6-27 (189)
439 1m7b_A RND3/RHOE small GTP-bin 92.0 0.079 2.7E-06 46.8 3.0 22 227-248 9-30 (184)
440 1z0f_A RAB14, member RAS oncog 92.0 0.082 2.8E-06 45.9 3.1 23 227-249 17-39 (179)
441 2lkc_A Translation initiation 92.0 0.098 3.3E-06 45.5 3.6 23 225-247 8-30 (178)
442 2hf9_A Probable hydrogenase ni 91.9 0.15 5.1E-06 46.6 4.9 25 226-250 39-63 (226)
443 3con_A GTPase NRAS; structural 91.9 0.085 2.9E-06 46.7 3.1 22 227-248 23-44 (190)
444 2oil_A CATX-8, RAS-related pro 91.9 0.085 2.9E-06 46.9 3.1 22 227-248 27-48 (193)
445 3clv_A RAB5 protein, putative; 91.9 0.086 2.9E-06 46.8 3.2 23 226-248 8-30 (208)
446 2bme_A RAB4A, RAS-related prot 91.9 0.083 2.8E-06 46.4 3.0 22 227-248 12-33 (186)
447 2a9k_A RAS-related protein RAL 91.9 0.087 3E-06 46.1 3.1 22 227-248 20-41 (187)
448 2atv_A RERG, RAS-like estrogen 91.9 0.092 3.1E-06 46.9 3.3 23 226-248 29-51 (196)
449 2efe_B Small GTP-binding prote 91.9 0.09 3.1E-06 45.9 3.2 22 227-248 14-35 (181)
450 2wjy_A Regulator of nonsense t 91.8 0.14 4.9E-06 56.7 5.4 22 227-248 373-394 (800)
451 2p67_A LAO/AO transport system 91.8 0.3 1E-05 48.3 7.2 25 225-249 56-80 (341)
452 2ffh_A Protein (FFH); SRP54, s 91.8 0.14 4.8E-06 52.4 4.9 26 224-249 97-122 (425)
453 2e87_A Hypothetical protein PH 91.7 0.65 2.2E-05 46.1 9.6 24 225-248 167-190 (357)
454 1nij_A Hypothetical protein YJ 91.7 0.12 4.2E-06 50.6 4.2 22 228-249 7-28 (318)
455 3t1o_A Gliding protein MGLA; G 91.7 0.095 3.2E-06 46.4 3.1 23 227-249 16-38 (198)
456 1wp9_A ATP-dependent RNA helic 91.7 0.78 2.7E-05 46.3 10.5 32 227-258 25-60 (494)
457 3tw8_B RAS-related protein RAB 91.7 0.087 3E-06 45.9 2.8 21 227-247 11-31 (181)
458 3kkq_A RAS-related protein M-R 91.6 0.096 3.3E-06 46.0 3.1 22 227-248 20-41 (183)
459 1m2o_B GTP-binding protein SAR 91.6 0.092 3.2E-06 46.9 3.0 22 227-248 25-46 (190)
460 2g6b_A RAS-related protein RAB 91.6 0.097 3.3E-06 45.7 3.1 22 227-248 12-33 (180)
461 1mh1_A RAC1; GTP-binding, GTPa 91.6 0.097 3.3E-06 45.9 3.1 22 227-248 7-28 (186)
462 2vp4_A Deoxynucleoside kinase; 91.6 0.06 2E-06 50.1 1.8 22 227-248 22-43 (230)
463 1qhl_A Protein (cell division 91.6 0.028 9.6E-07 52.6 -0.5 23 228-250 30-52 (227)
464 3qks_A DNA double-strand break 91.6 0.093 3.2E-06 47.9 3.0 25 227-251 25-49 (203)
465 3ihw_A Centg3; RAS, centaurin, 91.6 0.1 3.4E-06 46.4 3.2 21 228-248 23-43 (184)
466 3ld9_A DTMP kinase, thymidylat 91.6 0.098 3.4E-06 48.7 3.2 25 227-251 23-47 (223)
467 3o8b_A HCV NS3 protease/helica 91.6 2.7 9.1E-05 45.4 14.8 35 224-258 231-265 (666)
468 1svi_A GTP-binding protein YSX 91.5 0.13 4.3E-06 45.7 3.8 24 225-248 23-46 (195)
469 2b6h_A ADP-ribosylation factor 91.5 0.12 4.1E-06 46.2 3.7 23 225-247 29-51 (192)
470 2gf9_A RAS-related protein RAB 91.5 0.1 3.5E-06 46.2 3.1 22 227-248 24-45 (189)
471 3c5c_A RAS-like protein 12; GD 91.5 0.1 3.6E-06 46.3 3.2 21 228-248 24-44 (187)
472 1ko7_A HPR kinase/phosphatase; 91.4 0.12 4E-06 50.7 3.7 24 225-248 144-167 (314)
473 2v6i_A RNA helicase; membrane, 91.4 0.67 2.3E-05 47.3 9.6 17 226-242 3-19 (431)
474 2cxx_A Probable GTP-binding pr 91.4 0.089 3.1E-06 46.4 2.6 21 228-248 4-24 (190)
475 3bwd_D RAC-like GTP-binding pr 91.4 0.11 3.6E-06 45.5 3.1 23 226-248 9-31 (182)
476 4tmk_A Protein (thymidylate ki 91.4 0.1 3.6E-06 48.1 3.1 22 228-249 6-27 (213)
477 3l9o_A ATP-dependent RNA helic 91.4 0.37 1.3E-05 55.4 8.3 23 225-247 199-221 (1108)
478 3tkl_A RAS-related protein RAB 91.4 0.11 3.6E-06 46.2 3.1 22 227-248 18-39 (196)
479 3dz8_A RAS-related protein RAB 91.3 0.11 3.8E-06 46.1 3.2 23 227-249 25-47 (191)
480 2fg5_A RAB-22B, RAS-related pr 91.3 0.11 3.7E-06 46.3 3.1 22 227-248 25-46 (192)
481 1f6b_A SAR1; gtpases, N-termin 91.3 0.12 4.2E-06 46.4 3.5 21 227-247 27-47 (198)
482 3t5g_A GTP-binding protein RHE 91.2 0.11 3.7E-06 45.5 3.0 21 227-247 8-28 (181)
483 1tq4_A IIGP1, interferon-induc 91.2 0.098 3.4E-06 53.4 3.0 21 227-247 71-91 (413)
484 1w36_D RECD, exodeoxyribonucle 91.2 0.099 3.4E-06 56.1 3.2 24 226-249 165-188 (608)
485 2gks_A Bifunctional SAT/APS ki 91.2 0.12 4.2E-06 54.6 3.9 36 226-261 373-411 (546)
486 2bov_A RAla, RAS-related prote 91.2 0.11 3.8E-06 46.5 3.1 22 227-248 16-37 (206)
487 2iwr_A Centaurin gamma 1; ANK 91.2 0.085 2.9E-06 46.1 2.2 22 227-248 9-30 (178)
488 1z06_A RAS-related protein RAB 91.2 0.11 3.9E-06 45.9 3.2 22 227-248 22-43 (189)
489 1zd9_A ADP-ribosylation factor 91.2 0.11 3.9E-06 46.0 3.1 22 227-248 24-45 (188)
490 1x3s_A RAS-related protein RAB 91.1 0.12 3.9E-06 45.8 3.1 22 227-248 17-38 (195)
491 1vg8_A RAS-related protein RAB 91.1 0.12 4E-06 46.4 3.2 23 227-249 10-32 (207)
492 3reg_A RHO-like small GTPase; 91.1 0.12 3.9E-06 46.1 3.1 22 227-248 25-46 (194)
493 2a5j_A RAS-related protein RAB 91.1 0.12 4E-06 46.0 3.1 21 228-248 24-44 (191)
494 2p6r_A Afuhel308 helicase; pro 91.1 0.71 2.4E-05 50.2 9.9 19 225-243 40-58 (702)
495 1yqt_A RNAse L inhibitor; ATP- 91.1 0.12 4.2E-06 54.6 3.7 26 224-249 46-71 (538)
496 2rcn_A Probable GTPase ENGC; Y 91.0 0.11 3.6E-06 52.1 3.0 25 226-250 216-240 (358)
497 3pqc_A Probable GTP-binding pr 91.0 0.1 3.5E-06 46.1 2.6 22 227-248 25-46 (195)
498 4a2p_A RIG-I, retinoic acid in 91.0 1 3.5E-05 46.8 10.8 23 226-248 23-45 (556)
499 2bcg_Y Protein YP2, GTP-bindin 91.0 0.12 4E-06 46.5 3.0 22 227-248 10-31 (206)
500 3euj_A Chromosome partition pr 90.9 0.12 4E-06 53.8 3.3 25 226-250 30-54 (483)
No 1
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-83 Score=654.21 Aligned_cols=437 Identities=68% Similarity=1.119 Sum_probs=351.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCchhhhhhccccCCCccCCCCcccCChhhHHHHHHHHHHHHHHHH
Q 011553 1 MGQGTPGGLNRQGPGGDRKGDGADKKDKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLM 80 (483)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (483)
|||++|+|.++ +++++++++++|+|| +|+++|+|||+ +|++...+||+|+|..+|++++++|++++++|.+
T Consensus 1 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 71 (437)
T 4b4t_I 1 MGQGVSSGQDK-------KKKKGSNQKPKYEPP-VQSKFGRKKRK-GGPATAEKLPNIYPSTRCKLKLLRMERIKDHLLL 71 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCcc-------cccccccccccCCCC-CccccccccCC-CCcchhhcCcccCCcchhhHHHHHHHHHHHHHHH
Confidence 89998854321 233445677888887 89999987655 6999999999999999999999999999999999
Q ss_pred HHHHhhhhhhcChhHHHHHHHHHHHHhhhCCCcccccceecccCCeEEEecccCCceeEEeccccCccCCCCccEEEEec
Q 011553 81 EEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHN 160 (483)
Q Consensus 81 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 160 (483)
|+++..+++..++.+++.++++++++.+++.|+.++++.|.++++++++.++.++++++++.+++++..++||++|.+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~ 151 (437)
T 4b4t_I 72 EEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHH 151 (437)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEEECTTSEEEEECSSSCCCEEECCTTSCGGGCCTTCEEEECT
T ss_pred HHHHHHhHHhhhhHHHHHHHHHHHHHhhcCCCceeEEEEEEecCCEEEEEcCCCCEEEEecccccCHhHccCCcEEEEec
Confidence 99999999887777778888899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeccccCcCcccccceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHH
Q 011553 161 KVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTL 240 (483)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~ 240 (483)
.++.++++++.+.++.++.|.+++.|.++|+||+|+++++++|++.+.+|+.+|++|..+|+.+|+|||||||||||||+
T Consensus 152 ~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTl 231 (437)
T 4b4t_I 152 KTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTL 231 (437)
T ss_dssp TTCCEEEEECCCSSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHH
T ss_pred cCccceeecCCccCCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHH
Q 011553 241 LAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLN 320 (483)
Q Consensus 241 Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~ 320 (483)
||+|+|++++.+|+.++++++.++|+|+++..++.+|..|+..+||||||||+|.++..|....++++.+..+++.++|+
T Consensus 232 LAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~ 311 (437)
T 4b4t_I 232 LAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLN 311 (437)
T ss_dssp HHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987777778889999999999
Q ss_pred hccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhh
Q 011553 321 QLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGAD 400 (483)
Q Consensus 321 ~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~ 400 (483)
+++++....+|+||+|||+|+.||+||+|||||++.|+|+.||.++|.+||+.|+.++++..
T Consensus 312 ~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~------------------ 373 (437)
T 4b4t_I 312 QLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSE------------------ 373 (437)
T ss_dssp HHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCS------------------
T ss_pred HhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCC------------------
Confidence 99999888999999999999999999999999999999999999999999999999988776
Q ss_pred HHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhccCCCCCC
Q 011553 401 IKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEG 480 (483)
Q Consensus 401 i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~~~~~~~~ 480 (483)
+++++.++..++||||+||.++|++|++.|+++++..|+.+||.+|+++++.+..++.+++
T Consensus 374 -------------------dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~~~e~le~ 434 (437)
T 4b4t_I 374 -------------------DVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVEENLEG 434 (437)
T ss_dssp -------------------CCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHCCCSSSS
T ss_pred -------------------cCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCCChhhHHh
Confidence 7889999999999999999999999999999999999999999999999999999998999
Q ss_pred CCC
Q 011553 481 LYM 483 (483)
Q Consensus 481 ~~~ 483 (483)
||+
T Consensus 435 lYl 437 (437)
T 4b4t_I 435 LYL 437 (437)
T ss_dssp CCC
T ss_pred hcC
Confidence 996
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-64 Score=514.11 Aligned_cols=343 Identities=47% Similarity=0.819 Sum_probs=328.0
Q ss_pred HHHHHHHHHHhhhCCCcccccceecccCCeEEEecccCCceeEEeccccCccCCCCccEEEEeceeeeeeccccCcCccc
Q 011553 97 KAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPM 176 (483)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 176 (483)
+....+++++.++..|..++.+.+.++++++++.++.+..+++++.++++...++||++|.+++.++.++.+++...+|.
T Consensus 54 ~~~~~~~e~~~l~~~~~~v~~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~ 133 (405)
T 4b4t_J 54 KVRFIKDELRLLQEPGSYVGEVIKIVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPL 133 (405)
T ss_dssp HHHHHHHHHHHCCCCCEEEEEEEEECTTSCEEEEESSSCEEEECCCTTSCTTTCCSSCEEEEETTTCSCCEECCCCCSCC
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEEecCCeEEEEeCCCCEEEEecccccCHhhCCCcceeeeecccceeeeecCcccCch
Confidence 44455777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEE
Q 011553 177 VSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRV 256 (483)
Q Consensus 177 ~~~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v 256 (483)
+..+.+.+.|.++|+||+|+++++++|++.+.+|+.+|++|..+|+.+|+|+|||||||||||+||+|+|++++.+|+.+
T Consensus 134 ~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 134 VSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp TTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred hhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEE
Q 011553 257 VGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILA 336 (483)
Q Consensus 257 ~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~t 336 (483)
+++++.++|+|+++..++.+|..|+..+||||||||||.++.+|....++++.+..+++.++|+++|++....+|+||+|
T Consensus 214 ~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaA 293 (405)
T 4b4t_J 214 SGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMA 293 (405)
T ss_dssp EGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEE
T ss_pred EhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEec
Confidence 99999999999999999999999999999999999999999998777777788899999999999999999999999999
Q ss_pred eCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhcccc
Q 011553 337 TNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMT 416 (483)
Q Consensus 337 tn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~ 416 (483)
||+|+.|||||+|||||++.|+|++|+.++|.+||+.|++++++..
T Consensus 294 TNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~---------------------------------- 339 (405)
T 4b4t_J 294 TNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTR---------------------------------- 339 (405)
T ss_dssp ESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCS----------------------------------
T ss_pred cCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCc----------------------------------
Confidence 9999999999999999999999999999999999999999988776
Q ss_pred ccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhccCC
Q 011553 417 LADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEG 476 (483)
Q Consensus 417 ~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~~~~ 476 (483)
++++..++..++||||+||.++|++|++.|+++++..|+.+||..|+++++.+..+.
T Consensus 340 ---dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~~~~~ 396 (405)
T 4b4t_J 340 ---GINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQET 396 (405)
T ss_dssp ---SCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHHHTCC
T ss_pred ---cCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCccccc
Confidence 788999999999999999999999999999999999999999999999998776554
No 3
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-63 Score=515.86 Aligned_cols=384 Identities=47% Similarity=0.803 Sum_probs=349.6
Q ss_pred CccCCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhcChhHHHHHHHHHHHHhhhCCCcccccceecccCCeEEE
Q 011553 50 EAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIV 129 (483)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 129 (483)
.....++.. ...+|.++.+|+++.+.+..|+++.+++.+ ...++..+.+++++.++..|..++++.|.+++.++++
T Consensus 35 ~~~~~l~~~--~~dl~~~lk~le~~~~~L~~e~e~l~~~~~--~~~~e~~~~~ee~~~l~~~~~~vg~~~e~~d~~~~iv 110 (428)
T 4b4t_K 35 NNNSALSNV--NSDIYFKLKKLEKEYELLTLQEDYIKDEQR--HLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQNTGIV 110 (428)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTCSCEEEEEEEEEEETTEEEE
T ss_pred chhhhcccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCceeeEEEEEccCCeeEE
Confidence 344446555 458889999999999999999988766543 2333445678889999999999999999999999999
Q ss_pred ecccCCceeEEeccccCccCCCCccEEEEeceeeeeeccccCcCcccccceecccCCCCCcccccccHHHHHHHHHHHhc
Q 011553 130 SSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVEL 209 (483)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~ 209 (483)
.++.++.+++++.+.+++..+.+|+.|.+++.++.++.++++.+++.+..|.+++.|.++|+||+|+++++++|++.+.+
T Consensus 111 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~ 190 (428)
T 4b4t_K 111 SSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVEL 190 (428)
T ss_dssp EETTSCEEEECBCSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHHHH
T ss_pred ecCCCCEEEEeccccccHhhCCCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEE
Q 011553 210 PLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVF 289 (483)
Q Consensus 210 pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~ 289 (483)
|+.+|++|..+|+.+|+|+|||||||||||++|+|+|++++.+|+.++++++.++|+|+++..++.+|..|+..+|||||
T Consensus 191 pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~Iif 270 (428)
T 4b4t_K 191 PLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIF 270 (428)
T ss_dssp HHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcC-CCCHHHHH
Q 011553 290 IDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP-LPDIKTRR 368 (483)
Q Consensus 290 iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~-~P~~~~r~ 368 (483)
|||+|.++..|....++++.+..+++.++|++++++....+|+||+|||+|+.|||+|+|||||++.|+|| +|+.++|.
T Consensus 271 iDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~ 350 (428)
T 4b4t_K 271 IDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERR 350 (428)
T ss_dssp EECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHH
T ss_pred chhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHH
Confidence 99999999999777777777889999999999999998899999999999999999999999999999997 89999999
Q ss_pred HHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 011553 369 RIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLL 448 (483)
Q Consensus 369 ~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~ 448 (483)
.||+.++.++++.. +++++.++..++||||+||.++|++|++.
T Consensus 351 ~Il~~~~~~~~l~~-------------------------------------~~dl~~lA~~t~G~sgadi~~l~~eA~~~ 393 (428)
T 4b4t_K 351 LIFGTIASKMSLAP-------------------------------------EADLDSLIIRNDSLSGAVIAAIMQEAGLR 393 (428)
T ss_dssp HHHHHHHHSSCBCT-------------------------------------TCCHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCc-------------------------------------ccCHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 99999999988776 78899999999999999999999999999
Q ss_pred HHHhcCCCccHHHHHHHHHHHHhhcc
Q 011553 449 ALRERRMKVTHTDFKKAKEKVMFKKK 474 (483)
Q Consensus 449 A~~~~~~~it~ed~~~Al~~~~~~~~ 474 (483)
|+++++..|+.+||.+|+.+++....
T Consensus 394 a~r~~~~~i~~~d~~~A~~~~~~~~~ 419 (428)
T 4b4t_K 394 AVRKNRYVILQSDLEEAYATQVKTDN 419 (428)
T ss_dssp HHHTTCSSBCHHHHHHHHHHHSCSCC
T ss_pred HHHCCCCCCCHHHHHHHHHHhhCccC
Confidence 99999999999999999998875443
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-62 Score=502.90 Aligned_cols=340 Identities=43% Similarity=0.764 Sum_probs=324.4
Q ss_pred HHHHHHHHhhhCCCcccccceecccCCeEEEecccCCceeEEeccccCccCCCCccEEEEeceeeeeeccccCcCccccc
Q 011553 99 EEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVS 178 (483)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 178 (483)
...+++++.|+..+..++.+.+.+++.+.++.++.++.+++++.+.+++..+++|+.|.+++.++.++.+++.+.+|.+.
T Consensus 89 ~~~~~~~~~l~~~~~~vg~~~~~~~~~~~iv~~~~g~~~~v~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~d~~~~ 168 (437)
T 4b4t_L 89 DKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVY 168 (437)
T ss_dssp HHHHHHHHHHHSCCEEEEEEEECSSSSCEEEEETTSCEEEECBCSSSCTTSCCTTCEEEECSSSCSEEEECCCCSCCCCS
T ss_pred HHHHHHHHHhccCCceeeeheeeecCCcEEEEECCCCEEEEecccccCHhhcCCCceeeEcccchhHHHhcCcccCchhh
Confidence 34456689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEec
Q 011553 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (483)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~ 258 (483)
.|.+...|.++|+||+|+++++++|++.+.+|+.+|++|..+|+.+|+|||||||||||||+||+|||++++.+|+.+++
T Consensus 169 ~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~ 248 (437)
T 4b4t_L 169 NMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPA 248 (437)
T ss_dssp SCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred eeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeC
Q 011553 259 SELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (483)
Q Consensus 259 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn 338 (483)
+++.++|+|+++..++.+|..|+.++||||||||+|.++.+|.......+....+++.++|.+++++....+|+||+|||
T Consensus 249 s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATN 328 (437)
T 4b4t_L 249 SGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATN 328 (437)
T ss_dssp GGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEES
T ss_pred hhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999877767777788999999999999999889999999999
Q ss_pred CCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhcccccc
Q 011553 339 RIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLA 418 (483)
Q Consensus 339 ~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~ 418 (483)
+|+.|||+|+|||||++.|+|+.|+.++|.+||+.|+.++.+..
T Consensus 329 rp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~------------------------------------ 372 (437)
T 4b4t_L 329 RPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTG------------------------------------ 372 (437)
T ss_dssp STTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCS------------------------------------
T ss_pred CchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCc------------------------------------
Confidence 99999999999999999999999999999999999999988766
Q ss_pred ccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhccC
Q 011553 419 DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 475 (483)
Q Consensus 419 ~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~~~ 475 (483)
++++..++..++||||+||.++|++|++.|+++++..|+.+||..|++++...++.
T Consensus 373 -d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~~k~ 428 (437)
T 4b4t_L 373 -EFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVKKL 428 (437)
T ss_dssp -CCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHTCC-
T ss_pred -ccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccCc
Confidence 78899999999999999999999999999999999999999999999999875544
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-61 Score=497.26 Aligned_cols=348 Identities=46% Similarity=0.817 Sum_probs=323.2
Q ss_pred HHHHHHHHHHhhhCCCcccccceecccCC--------------------------eEEEecccCCceeEEeccccCccCC
Q 011553 97 KAEEDRSKVDDLRGSPMSVGNLEELIDEN--------------------------HAIVSSSVGPEYYVGILSFVDKDQL 150 (483)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (483)
+..+.+++++.++..|..++.+.|.++.+ .+++.++.+..+++++.+++++..+
T Consensus 61 ~~~~~~~~i~~~~~~p~~v~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l 140 (434)
T 4b4t_M 61 KIKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVGKAAVVKTSSRQTVFLPMVGLVDPDKL 140 (434)
T ss_dssp HHHHHHHHHHHHCSSSCCEEEECCC---------------------------CCSEEEEEETTSCEEEEECCSSSCTTTS
T ss_pred HHHHHHHHHHhccCCcchhhhhhhhhccchhhhhccchhhhhhhhhhhhhcccCceEEEEcCCCCeEEEecccccCHhHC
Confidence 34455677888889999888888877643 5788899999999999999999999
Q ss_pred CCccEEEEeceeeeeeccccCcCcccccceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEE
Q 011553 151 EPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVIL 230 (483)
Q Consensus 151 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL 230 (483)
+||+.|.++..++.++.+++.+++|.+..|.++..|.++|+||+|+++++++|++.+.+|+.+|++|..+|+++|+||||
T Consensus 141 ~~~~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLL 220 (434)
T 4b4t_M 141 KPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALM 220 (434)
T ss_dssp CSSEEEEECSSSCSEEEEEEESSSCSCSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEE
T ss_pred CCCCEEeEcCcchhhheecCcccCchhhhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHH
Q 011553 231 YGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGERE 310 (483)
Q Consensus 231 ~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~ 310 (483)
|||||||||++|+|+|++++.+|+.++++++.++|+|+++..++.+|..|+..+||||||||+|.++.+|....+++...
T Consensus 221 yGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~ 300 (434)
T 4b4t_M 221 YGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDRE 300 (434)
T ss_dssp ESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHH
T ss_pred ECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997777777788
Q ss_pred HHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHH
Q 011553 311 IQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFV 390 (483)
Q Consensus 311 ~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la 390 (483)
..+++.++|++++++....+|+||+|||+|+.|||||+|||||++.|+|+.|+.++|.+||+.|+.++++..
T Consensus 301 ~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~-------- 372 (434)
T 4b4t_M 301 VQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDD-------- 372 (434)
T ss_dssp HHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCS--------
T ss_pred HHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCC--------
Confidence 899999999999999988999999999999999999999999999999999999999999999999888776
Q ss_pred hhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 011553 391 MTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 391 ~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~ 470 (483)
+++++.++..++||||+||.++|++|++.|+++++..|+.+||.+|++++.
T Consensus 373 -----------------------------dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~ 423 (434)
T 4b4t_M 373 -----------------------------DINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQ 423 (434)
T ss_dssp -----------------------------CCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCS
T ss_pred -----------------------------cCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 788999999999999999999999999999999999999999999999988
Q ss_pred hhccCCCCCCCCC
Q 011553 471 FKKKEGVPEGLYM 483 (483)
Q Consensus 471 ~~~~~~~~~~~~~ 483 (483)
.+++..+ .+|.
T Consensus 424 ~~~~~~i--~~Ya 434 (434)
T 4b4t_M 424 ARKSKSV--SFYA 434 (434)
T ss_dssp SSCCCCC--CCCC
T ss_pred CCCCcCc--cccC
Confidence 7666543 5663
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-59 Score=482.76 Aligned_cols=314 Identities=47% Similarity=0.818 Sum_probs=302.2
Q ss_pred cCCeEEEecccCCceeEEeccccCccCCCCccEEEEeceeeeeeccccCcCcccccceecccCCCCCcccccccHHHHHH
Q 011553 123 DENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQE 202 (483)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~Gl~~~~~~ 202 (483)
++...++..+.+..|++++.+.++++.++||++|.+++.++.++..++.+.||.+..|.+++.|.++|+||+|+++++++
T Consensus 141 ~~~~~~v~~~~~~~~~v~~~~~~~~~~l~~g~~v~l~~~~~~i~~~lp~~~d~~v~~m~v~e~P~vt~~DIgGl~~~k~~ 220 (467)
T 4b4t_H 141 EDAKYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEK 220 (467)
T ss_dssp CCCCCEEEETTSCCBCCCCCTTCCSSSCCTTCEECSCTTSCCCCCSSCSSSCCCCCCCEEESSCSCCCSSCTTCHHHHHH
T ss_pred CCCcEEEEecCCCeEEEecCCcCCHHHCCCCCEEEEccCcceeeecCCCccCCccceeeecCCCCCCHHHhccHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhh
Q 011553 203 IKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADD 282 (483)
Q Consensus 203 l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~ 282 (483)
|++.|.+|+.+|++|..+|+.+|+|||||||||||||+||+|||++++.+|+.++++++.++|+|+++..++.+|..|+.
T Consensus 221 L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~ 300 (467)
T 4b4t_H 221 LREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMART 300 (467)
T ss_dssp HHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCC
Q 011553 283 LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLP 362 (483)
Q Consensus 283 ~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P 362 (483)
.+||||||||+|.++.+|....++......++++++|.+++++....+|+||+|||+|+.||++|+|||||++.|+|+.|
T Consensus 301 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lP 380 (467)
T 4b4t_H 301 KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLP 380 (467)
T ss_dssp TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCC
T ss_pred cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCc
Confidence 99999999999999999987777777888999999999999999899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHH
Q 011553 363 DIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAIC 442 (483)
Q Consensus 363 ~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~ 442 (483)
+.++|.+||+.|+.++++.. +++++.++..+.||||+||.++|
T Consensus 381 d~~~R~~Ilk~~l~~~~l~~-------------------------------------dvdl~~LA~~T~GfSGADI~~l~ 423 (467)
T 4b4t_H 381 DLEGRANIFRIHSKSMSVER-------------------------------------GIRWELISRLCPNSTGAELRSVC 423 (467)
T ss_dssp CHHHHHHHHHHHHTTSCBCS-------------------------------------SCCHHHHHHHCCSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCC-------------------------------------CCCHHHHHHHCCCCCHHHHHHHH
Confidence 99999999999999988776 78899999999999999999999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhhc
Q 011553 443 TEAGLLALRERRMKVTHTDFKKAKEKVMFKK 473 (483)
Q Consensus 443 ~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~ 473 (483)
++|++.|+++++..|+.+||..|+++++...
T Consensus 424 ~eAa~~Air~~~~~it~~Df~~Al~kV~~g~ 454 (467)
T 4b4t_H 424 TEAGMFAIRARRKVATEKDFLKAVDKVISGY 454 (467)
T ss_dssp HHHHHHHHHHTCSSBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999998643
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=8.2e-45 Score=399.97 Aligned_cols=255 Identities=37% Similarity=0.667 Sum_probs=195.0
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 183 ~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
...|.++|+||+|+++++++|.+.+.+|+.+|++|..+|..+++|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~ 548 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCC
Q 011553 263 QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 342 (483)
Q Consensus 263 ~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ 342 (483)
++|+|++++.++.+|..|+..+||||||||||.++.+|.....+......+++.+||.+|+++....+|+||+|||+|+.
T Consensus 549 s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~ 628 (806)
T 3cf2_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSS
T ss_pred ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchh
Confidence 99999999999999999999999999999999999988654444455567889999999999988889999999999999
Q ss_pred CChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCC
Q 011553 343 LDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVN 422 (483)
Q Consensus 343 ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~ 422 (483)
||++++|||||+++|+|++|+.++|.+||+.+++++++.. +++
T Consensus 629 lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~-------------------------------------~~d 671 (806)
T 3cf2_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK-------------------------------------DVD 671 (806)
T ss_dssp SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CC-------------------------------------C--
T ss_pred CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCC-------------------------------------CCC
Confidence 9999999999999999999999999999999999888766 777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhc-------------------------CCCccHHHHHHHHHHHHhhcc
Q 011553 423 LEEFVMTKDEFSGADIKAICTEAGLLALRER-------------------------RMKVTHTDFKKAKEKVMFKKK 474 (483)
Q Consensus 423 l~~la~~~~g~s~~di~~l~~~A~~~A~~~~-------------------------~~~it~ed~~~Al~~~~~~~~ 474 (483)
++.++..++||||+||.++|++|++.|+++. ...|+.+||.+|++++.....
T Consensus 672 l~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs 748 (806)
T 3cf2_A 672 LEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVS 748 (806)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC--------
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCC
Confidence 8889999999999999999999999998763 125899999999998865443
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=9.7e-42 Score=375.55 Aligned_cols=249 Identities=46% Similarity=0.751 Sum_probs=227.0
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 183 ~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
...|.++|+||+|+++++++|++.+.+|+.+|++|..+|+.+|+|||||||||||||+||+++|++++.+|+.++++++.
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCC
Q 011553 263 QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 342 (483)
Q Consensus 263 ~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ 342 (483)
++|.|+++..++.+|..|+.++||||||||||.|++++....++.. .+.+.+++..++++..+.+|+||+|||+++.
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~---~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE---RRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTH---HHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHH---HHHHHHHHHHHhcccccCCEEEEEecCChhh
Confidence 9999999999999999999999999999999999988855443333 4667778888888877889999999999999
Q ss_pred CChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCC
Q 011553 343 LDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVN 422 (483)
Q Consensus 343 ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~ 422 (483)
+|++|+|||||++.|+|+.|+.++|.+||+.++.++.+.. +++
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~-------------------------------------dvd 395 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-------------------------------------DVD 395 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECT-------------------------------------TCC
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCc-------------------------------------ccC
Confidence 9999999999999999999999999999999999887766 788
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhc-----------------CCCccHHHHHHHHHHHHh
Q 011553 423 LEEFVMTKDEFSGADIKAICTEAGLLALRER-----------------RMKVTHTDFKKAKEKVMF 471 (483)
Q Consensus 423 l~~la~~~~g~s~~di~~l~~~A~~~A~~~~-----------------~~~it~ed~~~Al~~~~~ 471 (483)
+..++..+.||+++||.++|++|.+.|+++. ...|+.+||..|++.+..
T Consensus 396 l~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~p 461 (806)
T 3cf2_A 396 LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCC
Confidence 9999999999999999999999999998753 235888999999887653
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=2.1e-38 Score=315.87 Aligned_cols=251 Identities=38% Similarity=0.684 Sum_probs=216.5
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 183 ~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
...|.++|+||+|++++++.|.+.+..|+.+++.|..+++.+++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 86 (301)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCC
Q 011553 263 QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 342 (483)
Q Consensus 263 ~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ 342 (483)
..+.|.....++.+|..+....|+||||||+|.+...+............+.+.+++..++++....+++||+|||+++.
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 166 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG
T ss_pred hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc
Confidence 99999999999999999999999999999999998665332111111122445566666666666778999999999999
Q ss_pred CChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCC
Q 011553 343 LDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVN 422 (483)
Q Consensus 343 ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~ 422 (483)
++++++++|||+..++|+.|+.++|.+|++.++....+.. +++
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~-------------------------------------~~~ 209 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK-------------------------------------DVD 209 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCS-------------------------------------SCC
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCc-------------------------------------cch
Confidence 9999999999999999999999999999999998876654 667
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhc-------------------------CCCccHHHHHHHHHHHH
Q 011553 423 LEEFVMTKDEFSGADIKAICTEAGLLALRER-------------------------RMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 423 l~~la~~~~g~s~~di~~l~~~A~~~A~~~~-------------------------~~~it~ed~~~Al~~~~ 470 (483)
+..++..+.||+|+||.++|++|...|+++. ...|+.+||..|++.+.
T Consensus 210 ~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ 282 (301)
T 3cf0_A 210 LEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 282 (301)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcC
Confidence 7788888889999999999999988887542 13689999999988663
No 10
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.2e-37 Score=306.93 Aligned_cols=260 Identities=61% Similarity=0.999 Sum_probs=240.8
Q ss_pred ceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEec
Q 011553 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (483)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~ 258 (483)
.+.+...|..+|++|+|+++++++|.+++..++.+++.|..+|+..+.++||+||||||||++|+++|+.++.+|+.+++
T Consensus 5 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~ 84 (285)
T 3h4m_A 5 AMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG 84 (285)
T ss_dssp CEEEESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred cccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeC
Q 011553 259 SELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (483)
Q Consensus 259 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn 338 (483)
+++...+.|.....+..+|..+....|+||||||+|.++.++.+...+...+.+..+..+++.++++....+++||+|||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn 164 (285)
T 3h4m_A 85 SELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATN 164 (285)
T ss_dssp GGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECS
T ss_pred HHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999988776666677888999999999998887778999999999
Q ss_pred CCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhcccccc
Q 011553 339 RIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLA 418 (483)
Q Consensus 339 ~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~ 418 (483)
.++.+++++++++||+..+.++.|+.++|.+|++.++....+..
T Consensus 165 ~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~------------------------------------ 208 (285)
T 3h4m_A 165 RPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE------------------------------------ 208 (285)
T ss_dssp CGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT------------------------------------
T ss_pred CchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC------------------------------------
Confidence 99999999999999999999999999999999999988776655
Q ss_pred ccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhccC
Q 011553 419 DDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 475 (483)
Q Consensus 419 ~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~~~ 475 (483)
++++..++..+.|+++++|..+|++|...|+.+++..|+.+||.+|++.++.....
T Consensus 209 -~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~~~~ 264 (285)
T 3h4m_A 209 -DVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEKKKV 264 (285)
T ss_dssp -TCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHCC
T ss_pred -cCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhcccc
Confidence 67788899999999999999999999999999999999999999999999876543
No 11
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.6e-38 Score=309.14 Aligned_cols=247 Identities=39% Similarity=0.669 Sum_probs=206.5
Q ss_pred CCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhh
Q 011553 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (483)
Q Consensus 185 ~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~ 264 (483)
.|.++|+||+|+++++++|.+.+..|+.++++|..+++..++|++|+||||||||+|++++|..++.+++.+++.++...
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCC
Q 011553 265 YLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (483)
Q Consensus 265 ~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld 344 (483)
+.++....++.+|..+....|+++|+||+|.++..+..... ....+.+.+++.++++......++++++||+|+.+|
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~---~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET---GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 160 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc---hHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC
Confidence 88888888999999998889999999999998765432111 122355677888888887777899999999999999
Q ss_pred hhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCC---CCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccC
Q 011553 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM---TLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDV 421 (483)
Q Consensus 345 ~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~---~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~ 421 (483)
++++|||||++.|+++.|+.++|.+||+.++... .+.. ++
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~-------------------------------------~~ 203 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDA-------------------------------------DV 203 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCT-------------------------------------TC
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCcc-------------------------------------cc
Confidence 9999999999999999999999999999988642 2222 77
Q ss_pred CHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHhc-----------CCCccHHHHHHHHHHHHh
Q 011553 422 NLEEFVMTK--DEFSGADIKAICTEAGLLALRER-----------RMKVTHTDFKKAKEKVMF 471 (483)
Q Consensus 422 ~l~~la~~~--~g~s~~di~~l~~~A~~~A~~~~-----------~~~it~ed~~~Al~~~~~ 471 (483)
+++.++..+ +||||+||.++|++|++.|+++. ...|+.+||.+|++++..
T Consensus 204 ~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 204 NLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp CHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCC
T ss_pred CHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcC
Confidence 888888864 59999999999999999998752 347999999999987654
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=1.1e-36 Score=295.88 Aligned_cols=253 Identities=41% Similarity=0.715 Sum_probs=222.0
Q ss_pred ecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechH
Q 011553 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSE 260 (483)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~ 260 (483)
+.+..+..+|+||+|++++++++.+.+.. +.++..|..++...+++++|+||||||||++|+++|+.++.+|+.+++++
T Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~ 80 (257)
T 1lv7_A 2 LTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSD 80 (257)
T ss_dssp EEECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCS
T ss_pred CCccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHH
Confidence 45567888999999999999999998765 77888888888899999999999999999999999999999999999999
Q ss_pred HHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCC
Q 011553 261 LIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (483)
Q Consensus 261 l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~ 340 (483)
+...+.|.....++.+|..+....|+++||||+|.++..+.....++..+..+.+..++..++++....+++||+|||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~ 160 (257)
T 1lv7_A 81 FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP 160 (257)
T ss_dssp STTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCT
T ss_pred HHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCc
Confidence 99999999999999999999988899999999999987765444444555567778888888887777889999999999
Q ss_pred CCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhcccccccc
Q 011553 341 ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADD 420 (483)
Q Consensus 341 ~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~ 420 (483)
+.+++++++++||++.+.++.|+.++|.+|++.++....+.. +
T Consensus 161 ~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~-------------------------------------~ 203 (257)
T 1lv7_A 161 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-------------------------------------D 203 (257)
T ss_dssp TTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCT-------------------------------------T
T ss_pred hhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCc-------------------------------------c
Confidence 999999999999999999999999999999999988776554 6
Q ss_pred CCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 011553 421 VNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMF 471 (483)
Q Consensus 421 ~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~ 471 (483)
+++..++..+.||++++|.++|++|...|..++...|+.+||.+|++.+..
T Consensus 204 ~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 204 IDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp CCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTT
T ss_pred ccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHhc
Confidence 667788899999999999999999999999888899999999999998864
No 13
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=4.1e-37 Score=322.71 Aligned_cols=249 Identities=46% Similarity=0.759 Sum_probs=222.0
Q ss_pred CCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhh
Q 011553 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (483)
Q Consensus 185 ~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~ 264 (483)
.+.++|+||+|++++++++.+.+.. +.++..|..+|...|+|+||+||||||||+||+++|++++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 4678999999999999999998876 778899999999999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCC
Q 011553 265 YLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (483)
Q Consensus 265 ~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld 344 (483)
+.|.+...++.+|..|....|+||||||+|.++.++.....+.+.+..+++.+++..++++....+++||++||+++.+|
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 99988889999999999999999999999999887754444556666778889999888877677899999999999999
Q ss_pred hhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHH
Q 011553 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLE 424 (483)
Q Consensus 345 ~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~ 424 (483)
++++|||||++.+.|+.|+.++|.+|++.++...++.. ++++.
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~-------------------------------------~v~l~ 211 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAE-------------------------------------DVNLE 211 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCT-------------------------------------TCCHH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcc-------------------------------------hhhHH
Confidence 99999999999999999999999999999998876655 67788
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 011553 425 EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMF 471 (483)
Q Consensus 425 ~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~ 471 (483)
.++..+.|++++||.++|++|...|.+++...|+.+||.+|+.+++.
T Consensus 212 ~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 212 IIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC-
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHhc
Confidence 89999999999999999999999999888889999999999999864
No 14
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-36 Score=304.81 Aligned_cols=227 Identities=36% Similarity=0.625 Sum_probs=200.9
Q ss_pred cCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc-CCceEEEechHHH
Q 011553 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-SATFLRVVGSELI 262 (483)
Q Consensus 184 ~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l-~~~~~~v~~~~l~ 262 (483)
..|.++|+||+|++++++.|++.+.+|+.++++|.. +..+++++|||||||||||+||+++|+++ +.+|+.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 567889999999999999999999999999999975 35678999999999999999999999999 8899999999999
Q ss_pred hhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCc-CCCCeEEEEEeCCCC
Q 011553 263 QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD-SRGDVKVILATNRIE 341 (483)
Q Consensus 263 ~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~-~~~~v~vI~ttn~~~ 341 (483)
..|.|..+..++.+|..+....|+||||||+|.++..+.... .....+.+.+++..++++. ...+++||+|||+++
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE---SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC---TTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccccc---chHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 999999999999999999999999999999999987764432 2334566677888888765 357899999999999
Q ss_pred CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccC
Q 011553 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDV 421 (483)
Q Consensus 342 ~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~ 421 (483)
.++++++| ||+..++++.|+.++|..||+.++.......+ +.
T Consensus 161 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~------------------------------------~~ 202 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT------------------------------------EA 202 (322)
T ss_dssp TSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC------------------------------------HH
T ss_pred cCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC------------------------------------HH
Confidence 99999999 99999999999999999999999987654321 55
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 011553 422 NLEEFVMTKDEFSGADIKAICTEAGLLALRE 452 (483)
Q Consensus 422 ~l~~la~~~~g~s~~di~~l~~~A~~~A~~~ 452 (483)
++..++..+.|||++||.++|++|.+.|+++
T Consensus 203 ~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 203 DFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp HHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999875
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=3.3e-36 Score=302.72 Aligned_cols=248 Identities=35% Similarity=0.592 Sum_probs=211.6
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHH
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l 261 (483)
+...|.++|+||+|++++++.|.+.+..|+.++++|.. +..+++++|||||||||||++|+++|++++.+|+.++++++
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l 87 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 87 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence 45778899999999999999999999999999999877 45778999999999999999999999999999999999999
Q ss_pred HhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCc-CCCCeEEEEEeCCC
Q 011553 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD-SRGDVKVILATNRI 340 (483)
Q Consensus 262 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~-~~~~v~vI~ttn~~ 340 (483)
...|.|.....++.+|..+....|+||||||||.+...+.......... ...+++..++++. ...+++||+|||.+
T Consensus 88 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~---~~~~ll~~l~~~~~~~~~v~vi~atn~~ 164 (322)
T 3eie_A 88 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRR---IKTELLVQMNGVGNDSQGVLVLGATNIP 164 (322)
T ss_dssp HTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHH---HHHHHHHHHGGGGTSCCCEEEEEEESCG
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHH---HHHHHHHHhccccccCCceEEEEecCCh
Confidence 9999999999999999999999999999999999987764443333333 3445555555543 45689999999999
Q ss_pred CCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhcccccccc
Q 011553 341 ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADD 420 (483)
Q Consensus 341 ~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~ 420 (483)
+.+++++++ ||+..++++.|+.++|..||+.++........ +
T Consensus 165 ~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~------------------------------------~ 206 (322)
T 3eie_A 165 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLT------------------------------------K 206 (322)
T ss_dssp GGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC------------------------------------H
T ss_pred hhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC------------------------------------H
Confidence 999999999 99999999999999999999999987654321 4
Q ss_pred CCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcC-------------------------------------------CCc
Q 011553 421 VNLEEFVMTKDEFSGADIKAICTEAGLLALRERR-------------------------------------------MKV 457 (483)
Q Consensus 421 ~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~-------------------------------------------~~i 457 (483)
.++..++..+.||+++||.++|++|.+.|+++.. ..|
T Consensus 207 ~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 286 (322)
T 3eie_A 207 EDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDL 286 (322)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCC
Confidence 5678899999999999999999999999987631 349
Q ss_pred cHHHHHHHHHHHHh
Q 011553 458 THTDFKKAKEKVMF 471 (483)
Q Consensus 458 t~ed~~~Al~~~~~ 471 (483)
|.+||.+|++.+..
T Consensus 287 t~~df~~al~~~~p 300 (322)
T 3eie_A 287 TIKDFLKAIKSTRP 300 (322)
T ss_dssp CHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHhcCC
Confidence 99999999987643
No 16
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=4.3e-35 Score=298.52 Aligned_cols=229 Identities=36% Similarity=0.627 Sum_probs=189.0
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHH
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l 261 (483)
....|.++|+||+|++++++.|.+.+..|+.++++|.. +..+++++|||||||||||+||+++|++++.+|+.++++++
T Consensus 42 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l 120 (355)
T 2qp9_X 42 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 120 (355)
T ss_dssp -----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 34567889999999999999999999999999999987 56788999999999999999999999999999999999999
Q ss_pred HhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcC-CCCeEEEEEeCCC
Q 011553 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS-RGDVKVILATNRI 340 (483)
Q Consensus 262 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~-~~~v~vI~ttn~~ 340 (483)
...|.|.....++.+|..+....|+||||||||.+...+...... ...+...+++..++++.. ..+++||+|||++
T Consensus 121 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~---~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~ 197 (355)
T 2qp9_X 121 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESE---ASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 197 (355)
T ss_dssp HSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CT---HHHHHHHHHHHHHHHCC---CCEEEEEEESCG
T ss_pred hhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcch---HHHHHHHHHHHHhhcccccCCCeEEEeecCCc
Confidence 999999999999999999999999999999999998766433222 233444555555555432 4679999999999
Q ss_pred CCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhcccccccc
Q 011553 341 ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADD 420 (483)
Q Consensus 341 ~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~ 420 (483)
+.+++++++ ||+..++++.|+.++|..||+.++........ +
T Consensus 198 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~------------------------------------~ 239 (355)
T 2qp9_X 198 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT------------------------------------K 239 (355)
T ss_dssp GGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC------------------------------------H
T ss_pred ccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC------------------------------------H
Confidence 999999999 99999999999999999999999987654311 4
Q ss_pred CCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 011553 421 VNLEEFVMTKDEFSGADIKAICTEAGLLALRE 452 (483)
Q Consensus 421 ~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~ 452 (483)
.++..|+..+.||+++||.++|++|.+.|+++
T Consensus 240 ~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 240 EDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999875
No 17
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=4.9e-35 Score=308.61 Aligned_cols=249 Identities=43% Similarity=0.737 Sum_probs=224.6
Q ss_pred CCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhh
Q 011553 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 265 (483)
Q Consensus 186 ~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~ 265 (483)
+.++|+||+|+++++.++.+.+.. +.++..|..+++..++|+||+||||||||+||++||..++.+|+.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 778999999999999999998876 6788899999999999999999999999999999999999999999999998888
Q ss_pred cCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCCh
Q 011553 266 LGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDP 345 (483)
Q Consensus 266 ~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~ 345 (483)
.|.....++.+|..+....|+|+||||||.++..+.....+...+..+++.+++.+++++.....+++|++||+|+.+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 88888889999999988889999999999998766433333456677888999999998877778999999999999999
Q ss_pred hhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHH
Q 011553 346 ALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEE 425 (483)
Q Consensus 346 allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~ 425 (483)
+++|||||++.|.|+.|+.++|.+||+.++....+.. ++++..
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~-------------------------------------dv~l~~ 227 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE-------------------------------------DVDLAL 227 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCC-------------------------------------SSTTHH
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCCh-------------------------------------HHHHHH
Confidence 9999999999999999999999999999987766555 677888
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhh
Q 011553 426 FVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFK 472 (483)
Q Consensus 426 la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~ 472 (483)
++..+.|++++||.++|++|+..|.+++...|+.+||.+|+.+++..
T Consensus 228 lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 228 LAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp HHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcc
Confidence 99999999999999999999999988778899999999999998754
No 18
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=2.8e-35 Score=285.87 Aligned_cols=251 Identities=41% Similarity=0.642 Sum_probs=197.1
Q ss_pred CCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhh
Q 011553 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 265 (483)
Q Consensus 186 ~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~ 265 (483)
|.++|++|+|++++++.|.+.+.. +.+++.|..+|...++++||+||||||||++|+++|++++.+|+.++++++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 457899999999999999998876 7788888889999999999999999999999999999999999999999998888
Q ss_pred cCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCC-ChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCC
Q 011553 266 LGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSG-GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (483)
Q Consensus 266 ~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~-~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld 344 (483)
.+.....++.+|..+....|+||||||+|.++..+.....+ .+.+.+..+..++..+++.....+++||+|||.++.++
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 88888889999999998889999999999997665332211 13345677888888888876677899999999999999
Q ss_pred hhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHH
Q 011553 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLE 424 (483)
Q Consensus 345 ~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~ 424 (483)
++++++|||+..++|+.|+.++|.+|++.++....+..+. .....
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~-----------------------------------~~~~~ 204 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSS-----------------------------------TFYSQ 204 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTH-----------------------------------HHHHH
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcch-----------------------------------hhHHH
Confidence 9999999999999999999999999999998877654421 22346
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhh
Q 011553 425 EFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFK 472 (483)
Q Consensus 425 ~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~ 472 (483)
.++..+.|+++++|.++|++|...|.+++...|+.+||..|++++...
T Consensus 205 ~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 205 RLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccC
Confidence 788889999999999999999999998888999999999999998764
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=1.3e-34 Score=305.83 Aligned_cols=248 Identities=46% Similarity=0.745 Sum_probs=219.1
Q ss_pred CCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhh
Q 011553 185 APLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (483)
Q Consensus 185 ~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~ 264 (483)
.+..+|++|+|++.++++|.+.+..++.++++|..+|+.++.++||+||||||||++|+++|++++.+|+.++|+++...
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCC
Q 011553 265 YLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (483)
Q Consensus 265 ~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld 344 (483)
+.|.....++.+|..+....|+||||||||.++.++...........+..|+.++ ++.....+++||+|||+++.++
T Consensus 278 ~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~l---d~~~~~~~v~vIaaTn~~~~Ld 354 (489)
T 3hu3_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLM---DGLKQRAHVIVMAATNRPNSID 354 (489)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHH---HHSCTTSCEEEEEEESCGGGBC
T ss_pred hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHh---hccccCCceEEEEecCCccccC
Confidence 9999999999999999999999999999999988764433333334444444444 4455567899999999999999
Q ss_pred hhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHH
Q 011553 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLE 424 (483)
Q Consensus 345 ~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~ 424 (483)
++++++|||+..++|+.|+.++|.+||+.++..+.+.. ++++.
T Consensus 355 ~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~-------------------------------------~~~l~ 397 (489)
T 3hu3_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-------------------------------------DVDLE 397 (489)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT-------------------------------------TCCHH
T ss_pred HHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc-------------------------------------hhhHH
Confidence 99999999999999999999999999999998877665 67788
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCC-----------------CccHHHHHHHHHHHHhh
Q 011553 425 EFVMTKDEFSGADIKAICTEAGLLALRERRM-----------------KVTHTDFKKAKEKVMFK 472 (483)
Q Consensus 425 ~la~~~~g~s~~di~~l~~~A~~~A~~~~~~-----------------~it~ed~~~Al~~~~~~ 472 (483)
.++..+.||++++|.++|++|...|+++... .|+.+||..|++.+...
T Consensus 398 ~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps 462 (489)
T 3hu3_A 398 QVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (489)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHH
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCch
Confidence 8999999999999999999999999876532 58999999999987643
No 20
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=1.5e-33 Score=273.44 Aligned_cols=246 Identities=43% Similarity=0.733 Sum_probs=212.1
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 183 ~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
...|..+|++++|+++++.++++.+.. +.++..+..+++..++|++|+||||||||+|++++|..++.+++.+++.++.
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 355778999999999999999987765 5677889999999999999999999999999999999999999999999998
Q ss_pred hhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCC
Q 011553 263 QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 342 (483)
Q Consensus 263 ~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ 342 (483)
..+.+.....+..+|..+....|+++|+||+|.++..+.........+..+.+.+++.++++......++++++||.|+.
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh
Confidence 88777777788899999987889999999999997665322222344566777888888888776677899999999999
Q ss_pred CChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCC
Q 011553 343 LDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVN 422 (483)
Q Consensus 343 ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~ 422 (483)
+|++++|++||++.++++.|+.++|.+||+.++....+.. +++
T Consensus 167 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~-------------------------------------~~~ 209 (254)
T 1ixz_A 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE-------------------------------------DVD 209 (254)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCT-------------------------------------TCC
T ss_pred CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCc-------------------------------------ccC
Confidence 9999999999999999999999999999998887766554 677
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 011553 423 LEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAK 466 (483)
Q Consensus 423 l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al 466 (483)
+..++..+.|++++||.++|++|...|.+++...|+.+||.+|+
T Consensus 210 ~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 210 LALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 88899999999999999999999999998888899999999885
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=3.9e-34 Score=299.78 Aligned_cols=229 Identities=36% Similarity=0.626 Sum_probs=191.0
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc-CCceEEEechH
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-SATFLRVVGSE 260 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l-~~~~~~v~~~~ 260 (483)
+...|.++|+||+|++++++.|.+.+..|+.++++|.. +..+++++||+||||||||+||+++|+++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 34568899999999999999999999999999999875 34677999999999999999999999999 88999999999
Q ss_pred HHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCc-CCCCeEEEEEeCC
Q 011553 261 LIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD-SRGDVKVILATNR 339 (483)
Q Consensus 261 l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~-~~~~v~vI~ttn~ 339 (483)
+...|.|.....++.+|..+....|+||||||||.++..+...... ...+.+.+++..++++. ...+++||+|||+
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~---~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE---AARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCG---GGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcccc---HHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 9999999999999999999999999999999999998776543322 23456677888888765 3578999999999
Q ss_pred CCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccc
Q 011553 340 IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLAD 419 (483)
Q Consensus 340 ~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~ 419 (483)
++.++++++| ||+..++++.|+.++|..||+.++...+....
T Consensus 281 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~------------------------------------ 322 (444)
T 2zan_A 281 PWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT------------------------------------ 322 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECC------------------------------------
T ss_pred ccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC------------------------------------
Confidence 9999999999 99999999999999999999999987654211
Q ss_pred cCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 011553 420 DVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 452 (483)
Q Consensus 420 ~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~ 452 (483)
+.++..++..+.|||++||.++|++|.+.|+++
T Consensus 323 ~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 323 EADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 456778888899999999999999999988875
No 22
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=2.7e-32 Score=268.38 Aligned_cols=246 Identities=43% Similarity=0.733 Sum_probs=212.1
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 183 ~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
...|..+|++++|++++++++.+.+.. +..+..+..+++..++|++|+||||||||+|++++|..++.+++.+++.++.
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 344788999999999999999987765 5677888899999999999999999999999999999999999999999998
Q ss_pred hhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCC
Q 011553 263 QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 342 (483)
Q Consensus 263 ~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ 342 (483)
..+.+.....+..+|..+....|+++|+||+|.++..+.........+....+.+++.++++......++++++||.|+.
T Consensus 111 ~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp HSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh
Confidence 88777777788899999988889999999999987655322222344567788889999988766667899999999999
Q ss_pred CChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCC
Q 011553 343 LDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVN 422 (483)
Q Consensus 343 ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~ 422 (483)
+|+++++++||++.++|+.|+.++|.+||+.++....+.. +++
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~-------------------------------------~~~ 233 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE-------------------------------------DVD 233 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCT-------------------------------------TCC
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCc-------------------------------------ccC
Confidence 9999999999999999999999999999999887765544 677
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 011553 423 LEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAK 466 (483)
Q Consensus 423 l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al 466 (483)
+..++..+.|++++||.++|++|...|..++...|+.+||.+|+
T Consensus 234 ~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 234 LALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 88899999999999999999999999988888899999999885
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=1.7e-32 Score=271.75 Aligned_cols=250 Identities=37% Similarity=0.601 Sum_probs=203.8
Q ss_pred ecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechH
Q 011553 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSE 260 (483)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~ 260 (483)
.+...++.+|++|+|++++++.|.+.+..|+.++++|..++ .+++++||+||||||||++|+++|+.++.+|+.+++++
T Consensus 11 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 89 (297)
T 3b9p_A 11 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAAS 89 (297)
T ss_dssp TBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTT
T ss_pred hccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHH
Confidence 34566889999999999999999999999999999887765 56789999999999999999999999999999999999
Q ss_pred HHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCC
Q 011553 261 LIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (483)
Q Consensus 261 l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~ 340 (483)
+...+.|.....++.+|..+....|+||||||+|.+...+...........+..++..++.........+++||++||.+
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 90 LTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp TSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred HhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 99999999999999999999999999999999999987664332333334444444444433322223579999999999
Q ss_pred CCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhcccccccc
Q 011553 341 ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADD 420 (483)
Q Consensus 341 ~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~ 420 (483)
+.+++++++ ||+..++++.|+.++|..|++.++.......+ +
T Consensus 170 ~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~------------------------------------~ 211 (297)
T 3b9p_A 170 QELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD------------------------------------T 211 (297)
T ss_dssp GGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC------------------------------------H
T ss_pred hhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC------------------------------------H
Confidence 999999999 99999999999999999999988876543211 3
Q ss_pred CCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhc------------CCCccHHHHHHHHHHH
Q 011553 421 VNLEEFVMTKDEFSGADIKAICTEAGLLALRER------------RMKVTHTDFKKAKEKV 469 (483)
Q Consensus 421 ~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~------------~~~it~ed~~~Al~~~ 469 (483)
.++..++..+.|+++++|.++|++|...|+++. ...|+.+||..|+..+
T Consensus 212 ~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 212 EALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHc
Confidence 346678888999999999999999999998764 2579999999998764
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.7e-32 Score=275.70 Aligned_cols=250 Identities=36% Similarity=0.604 Sum_probs=209.1
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHH
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l 261 (483)
+...++.+|++|+|++++++.|.+.+..|+.++++|...+ ..++++||+||||||||++|+++|+.++.+|+.++++++
T Consensus 75 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l 153 (357)
T 3d8b_A 75 MDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSL 153 (357)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHh
Confidence 4567889999999999999999999999999999887664 678899999999999999999999999999999999999
Q ss_pred HhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCc--CCCCeEEEEEeCC
Q 011553 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD--SRGDVKVILATNR 339 (483)
Q Consensus 262 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~--~~~~v~vI~ttn~ 339 (483)
...+.|.....++.+|..+....|+||||||||.+...+.... .....+.+.+++..+++.. ...+++||+|||.
T Consensus 154 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~ 230 (357)
T 3d8b_A 154 TSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE---HESSRRIKTEFLVQLDGATTSSEDRILVVGATNR 230 (357)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESC
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc---chHHHHHHHHHHHHHhcccccCCCCEEEEEecCC
Confidence 9999999899999999999999999999999999987653222 2233455556666666543 2468999999999
Q ss_pred CCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccc
Q 011553 340 IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLAD 419 (483)
Q Consensus 340 ~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~ 419 (483)
++.+++++++ ||+..++++.|+.++|..|+..++......-.
T Consensus 231 ~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~------------------------------------ 272 (357)
T 3d8b_A 231 PQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLS------------------------------------ 272 (357)
T ss_dssp GGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC------------------------------------
T ss_pred hhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc------------------------------------
Confidence 9999999999 99999999999999999999988876543211
Q ss_pred cCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhc------------CCCccHHHHHHHHHHHHhhc
Q 011553 420 DVNLEEFVMTKDEFSGADIKAICTEAGLLALRER------------RMKVTHTDFKKAKEKVMFKK 473 (483)
Q Consensus 420 ~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~------------~~~it~ed~~~Al~~~~~~~ 473 (483)
+.++..++..+.||++++|..+|++|...++++. ...|+.+||..|+..+.-..
T Consensus 273 ~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~ 338 (357)
T 3d8b_A 273 EEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSV 338 (357)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCCC
Confidence 3456778888999999999999999999988753 35799999999999886543
No 25
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=8.1e-32 Score=277.63 Aligned_cols=249 Identities=36% Similarity=0.593 Sum_probs=198.1
Q ss_pred eecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEech
Q 011553 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGS 259 (483)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~ 259 (483)
.++...++.+|++|+|++.+++.|.+++..|+.++++|..++ .+++++|||||||||||++|++||++++.+|+.++|+
T Consensus 104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~ 182 (389)
T 3vfd_A 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAA 182 (389)
T ss_dssp TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSC
T ss_pred hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHH
Confidence 345677889999999999999999999999999999888776 4578999999999999999999999999999999999
Q ss_pred HHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcC--CCCeEEEEEe
Q 011553 260 ELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS--RGDVKVILAT 337 (483)
Q Consensus 260 ~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~--~~~v~vI~tt 337 (483)
++...|.|.....++.+|..+....|+||||||||.++..+......... +.+..++..+++... ..+|+||+||
T Consensus 183 ~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~---~~~~~ll~~l~~~~~~~~~~v~vI~at 259 (389)
T 3vfd_A 183 SLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSAGDDRVLVMGAT 259 (389)
T ss_dssp CC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHH---HHHHHHHHHHHHHC-----CEEEEEEE
T ss_pred HhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHH---HHHHHHHHHhhcccccCCCCEEEEEec
Confidence 99999999999999999999999999999999999998765433233333 333444544444332 4579999999
Q ss_pred CCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccc
Q 011553 338 NRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTL 417 (483)
Q Consensus 338 n~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~ 417 (483)
|.++.+++++++ ||...++|+.|+.++|..||+.++........
T Consensus 260 n~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---------------------------------- 303 (389)
T 3vfd_A 260 NRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT---------------------------------- 303 (389)
T ss_dssp SCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----------------------------------
T ss_pred CCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----------------------------------
Confidence 999999999999 99999999999999999999998876543221
Q ss_pred cccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh------------cCCCccHHHHHHHHHHHH
Q 011553 418 ADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE------------RRMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 418 ~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~------------~~~~it~ed~~~Al~~~~ 470 (483)
+.++..++..+.|+++++|..||+.|...++++ ....|+.+||..+++.+.
T Consensus 304 --~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 366 (389)
T 3vfd_A 304 --QKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIK 366 (389)
T ss_dssp --HHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcC
Confidence 334677888899999999999999999999886 235799999999988653
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=9.5e-35 Score=283.81 Aligned_cols=251 Identities=43% Similarity=0.681 Sum_probs=209.7
Q ss_pred cCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh
Q 011553 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (483)
Q Consensus 184 ~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~ 263 (483)
+.|..+|++|+|++++++.|.+.+.. +.+++.|..++...++++||+||||||||++|+++|++++.+|+.++++.+..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 45677999999999999999998875 78899999999999999999999999999999999999999999999999998
Q ss_pred hhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCC-CCChHHHHHHHHHHHHhccCCcC-CCCeEEEEEeCCCC
Q 011553 264 KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAH-SGGEREIQRTMLELLNQLDGFDS-RGDVKVILATNRIE 341 (483)
Q Consensus 264 ~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~-~~~~~~~~~~l~~lL~~l~~~~~-~~~v~vI~ttn~~~ 341 (483)
.+.|.....++.+|..+....|+||||||+|.+...+.... ...+....+.+..++..+++... ..+++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 88888877788899999888999999999999976542110 00111112345566777766543 34699999999999
Q ss_pred CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccC
Q 011553 342 SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDV 421 (483)
Q Consensus 342 ~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~ 421 (483)
.++++++++|||+..++|+.|+.++|.+||+.++....+.. ++
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~-------------------------------------~~ 205 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLAN-------------------------------------DV 205 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCS-------------------------------------SC
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCC-------------------------------------cc
Confidence 99999999999999999999999999999999988776554 55
Q ss_pred CHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhh
Q 011553 422 NLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFK 472 (483)
Q Consensus 422 ~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~ 472 (483)
++..++..+.|+++++|.++|++|...|..++...|+.+||.+|++.+...
T Consensus 206 ~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 256 (268)
T 2r62_A 206 NLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAG 256 (268)
T ss_dssp CTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTCCCC
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHhhc
Confidence 667788889999999999999999999887777899999999998877654
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.98 E-value=9.2e-35 Score=324.51 Aligned_cols=233 Identities=40% Similarity=0.728 Sum_probs=200.4
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 183 ~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
...+.++|++++|++++++.|.+++.+|+.+++.|..+++.++.++||+||||||||+||+++|+.++.+|+.++++++.
T Consensus 469 ~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCC
Q 011553 263 QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES 342 (483)
Q Consensus 263 ~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ 342 (483)
..|+|+.+..++.+|..++...|+||||||||.++..+............+.+.++|..++++....+++||+|||+++.
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ 628 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGG
T ss_pred hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCccc
Confidence 99999999999999999999999999999999998877544333345567888899999999888889999999999999
Q ss_pred CChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCC
Q 011553 343 LDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVN 422 (483)
Q Consensus 343 ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~ 422 (483)
+|++++|||||+..|+|+.|+.++|..||+.++...++.. +++
T Consensus 629 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-------------------------------------~~~ 671 (806)
T 1ypw_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK-------------------------------------DVD 671 (806)
T ss_dssp GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----------------------------------------CCC
T ss_pred CCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCc-------------------------------------ccC
Confidence 9999999999999999999999999999999998877666 455
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 011553 423 LEEFVMTKDEFSGADIKAICTEAGLLALRE 452 (483)
Q Consensus 423 l~~la~~~~g~s~~di~~l~~~A~~~A~~~ 452 (483)
+..++..+.|||+++|.++|++|...|+++
T Consensus 672 l~~la~~t~g~sgadi~~l~~~a~~~a~~~ 701 (806)
T 1ypw_A 672 LEFLAKMTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp CSCSCGGGSSSCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhccccCHHHHHHHHHHHHHHHHHH
Confidence 566666677777777778888777777654
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=4.5e-28 Score=270.50 Aligned_cols=247 Identities=45% Similarity=0.750 Sum_probs=212.8
Q ss_pred cCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh
Q 011553 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (483)
Q Consensus 184 ~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~ 263 (483)
..+.++|+||+|++.+++.|.+.+..|+.++++|..+++.++.++||+||||||||+||+++|+.++.+|+.+++.++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCC
Q 011553 264 KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (483)
Q Consensus 264 ~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~l 343 (483)
.+.++....++.+|..+....|+++||||+|.++..+...... ...+.+..++..+++.....++++|+|||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~---~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE---VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSH---HHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccch---HHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 9999999999999999999999999999999998776433222 2234445566666677667889999999999999
Q ss_pred ChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCH
Q 011553 344 DPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNL 423 (483)
Q Consensus 344 d~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l 423 (483)
++++.+++||+..+.++.|+.++|.+||+.++..+.+.. +.++
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~-------------------------------------~~~l 396 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-------------------------------------DVDL 396 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCT-------------------------------------TCCT
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcc-------------------------------------cchh
Confidence 999999999999999999999999999999988877665 5667
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHhc-----------------CCCccHHHHHHHHHHHH
Q 011553 424 EEFVMTKDEFSGADIKAICTEAGLLALRER-----------------RMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 424 ~~la~~~~g~s~~di~~l~~~A~~~A~~~~-----------------~~~it~ed~~~Al~~~~ 470 (483)
..++..+.+++++++..+|++|...++++. ...++.+||..++....
T Consensus 397 ~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~ 460 (806)
T 1ypw_A 397 EQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSN 460 (806)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSC
T ss_pred HHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccC
Confidence 778888888888888888888888777643 23467778888877654
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.93 E-value=4.7e-26 Score=225.71 Aligned_cols=177 Identities=21% Similarity=0.308 Sum_probs=135.3
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHH----hhcCCeEEEEcCCccc
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA----DDLSPSIVFIDEIDAV 296 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~Il~iDEiD~l 296 (483)
+...|+++|||||||||||+||+++|++++.+|++++++++...|.|..+..++.+|..| +...|+||||||||.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567889999999999999999999999999999999999999999999999999999988 5678999999999999
Q ss_pred cccccCC--CCCChHHHHHHHHHHHHhcc--------CCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHH
Q 011553 297 GTKRYDA--HSGGEREIQRTMLELLNQLD--------GFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKT 366 (483)
Q Consensus 297 ~~~r~~~--~~~~~~~~~~~l~~lL~~l~--------~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~ 366 (483)
+..+... ........+..|+++++... ......+++||+|||+++.+|++++|+|||+..++ .|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHH
Confidence 8754221 11234456677777775322 22245689999999999999999999999998887 469999
Q ss_pred HHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHH
Q 011553 367 RRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKT 403 (483)
Q Consensus 367 r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~ 403 (483)
|.+|++.++... ..++..++..+.+|++.+|..
T Consensus 190 r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 190 RIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 999999887643 456778888899999988854
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=6.2e-22 Score=196.63 Aligned_cols=176 Identities=24% Similarity=0.335 Sum_probs=141.1
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhCCCC---CCceEEEcCCCCchHHHHHHHHHHcC-------CceEEEechHH
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKP---PKGVILYGEPGTGKTLLAKAVANSTS-------ATFLRVVGSEL 261 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~---~~gvLL~GppGtGKT~Laraia~~l~-------~~~~~v~~~~l 261 (483)
+|+|++++++.|.+.+..+. .+..+...|+.. +.++||+||||||||++|+++|+.++ .+|+.++++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 79999999999999988744 356666666543 44599999999999999999999873 48999999999
Q ss_pred HhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 262 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
...+.|.....+..+|..+. ++||||||+|.++..+.. .....+.+..|+.+++. ...+++||++||...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~-----~~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMEN-----NRDDLVVILAGYADR 180 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHH-----CTTTCEEEEEECHHH
T ss_pred hhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhc-----CCCCEEEEEeCChHH
Confidence 99999988888888888773 579999999999755422 23355667777777764 245789999998643
Q ss_pred -----CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCC
Q 011553 342 -----SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTL 380 (483)
Q Consensus 342 -----~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~ 380 (483)
.++|+|++ ||+.++.|++|+.+++..|++.++.....
T Consensus 181 ~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~ 222 (309)
T 3syl_A 181 MENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNY 222 (309)
T ss_dssp HHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCC
Confidence 25799998 99999999999999999999999876543
No 31
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.87 E-value=3.3e-24 Score=229.67 Aligned_cols=177 Identities=24% Similarity=0.330 Sum_probs=124.7
Q ss_pred ecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechH
Q 011553 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSE 260 (483)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~ 260 (483)
++.......+++++|++++++.+.+++........ . .+..++|+||||||||+||+++|..++.+|..++++.
T Consensus 71 ~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~------~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 71 DLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKS------L-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSS------C-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccc------C-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 34444555678899999999999887765321111 1 3556999999999999999999999999999998876
Q ss_pred HHh---------hhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc--CCc---
Q 011553 261 LIQ---------KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD--GFD--- 326 (483)
Q Consensus 261 l~~---------~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~--~~~--- 326 (483)
+.. .|+|..+..+...|..+....| ||||||||.+...+ ..+.+..|+++++... .+.
T Consensus 144 ~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~-------~~~~~~~LL~~ld~~~~~~~~~~~ 215 (543)
T 3m6a_A 144 VRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDF-------RGDPSSAMLEVLDPEQNSSFSDHY 215 (543)
T ss_dssp --------------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSS
T ss_pred cchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhh-------ccCHHHHHHHHHhhhhcceeeccc
Confidence 543 6677777778888888876666 99999999996432 2224455555554211 111
Q ss_pred -----CCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHH
Q 011553 327 -----SRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHT 375 (483)
Q Consensus 327 -----~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~ 375 (483)
...+++||+|||.++.++++|++ ||. +|.|+.|+.+++..|+..++
T Consensus 216 ~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 216 IEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp SCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred CCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 11578999999999999999999 995 89999999999999999876
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.87 E-value=1.3e-20 Score=189.70 Aligned_cols=223 Identities=13% Similarity=0.091 Sum_probs=163.6
Q ss_pred eecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEech
Q 011553 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGS 259 (483)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~ 259 (483)
.+.++..+.+|++++|.+.+++.+...+..... ....+.++||+||||||||++|+++|+.++.+|+.++|+
T Consensus 18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~ 89 (338)
T 3pfi_A 18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAP 89 (338)
T ss_dssp -----CCCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecch
Confidence 355667788999999999999999998875211 124456799999999999999999999999999999987
Q ss_pred HHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCC-------------c
Q 011553 260 ELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------------D 326 (483)
Q Consensus 260 ~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~-------------~ 326 (483)
.+. ....+...+.. ...+++|||||||.+ ....+..|+.+++..... .
T Consensus 90 ~~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 150 (338)
T 3pfi_A 90 MIE------KSGDLAAILTN--LSEGDILFIDEIHRL-----------SPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKI 150 (338)
T ss_dssp GCC------SHHHHHHHHHT--CCTTCEEEEETGGGC-----------CHHHHHHHHHHHHTSCC---------CCCCCC
T ss_pred hcc------chhHHHHHHHh--ccCCCEEEEechhhc-----------CHHHHHHHHHHHHhccchhhcccCccccceec
Confidence 652 23334444432 245689999999998 356777888877653210 0
Q ss_pred CCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHH
Q 011553 327 SRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRR 406 (483)
Q Consensus 327 ~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r 406 (483)
...++++|++||....++++|++ ||+..+.|++|+.+++..++..++......-+
T Consensus 151 ~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~----------------------- 205 (338)
T 3pfi_A 151 DLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCE----------------------- 205 (338)
T ss_dssp CCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEEC-----------------------
T ss_pred CCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCC-----------------------
Confidence 11258999999999999999999 99899999999999999999988776543211
Q ss_pred HHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 011553 407 IFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEK 468 (483)
Q Consensus 407 ~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~ 468 (483)
...+..++..+.| +.+++.++++.+...|...+...|+.+++..++..
T Consensus 206 -------------~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 206 -------------EKAALEIAKRSRS-TPRIALRLLKRVRDFADVNDEEIITEKRANEALNS 253 (338)
T ss_dssp -------------HHHHHHHHHTTTT-CHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 1223445554444 45778888888877776666777888888877765
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.86 E-value=6.3e-21 Score=194.00 Aligned_cols=222 Identities=20% Similarity=0.251 Sum_probs=155.9
Q ss_pred CCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC--ceEEEechHHHh
Q 011553 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSELIQ 263 (483)
Q Consensus 186 ~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~~~~l~~ 263 (483)
|..+|++++|.+.+++.+...+... ..+..+++++||+||||||||++|+++|+.++. +|+.+++..+..
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 3445999999999988865544321 113344678999999999999999999999985 888888766332
Q ss_pred hh-------------------------------------------------cCCchHHHHHHHHHHhh---------cCC
Q 011553 264 KY-------------------------------------------------LGDGPKLVRELFRVADD---------LSP 285 (483)
Q Consensus 264 ~~-------------------------------------------------~g~~~~~i~~~f~~a~~---------~~p 285 (483)
.+ .|.....++..|..+.. ..|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 22 12223344555544332 126
Q ss_pred eEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEe-----------CCCCCCChhhcCCCccc
Q 011553 286 SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT-----------NRIESLDPALLRPGRID 354 (483)
Q Consensus 286 ~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~tt-----------n~~~~ld~allr~gR~~ 354 (483)
+||||||+|.+ ..+.+..|+.+++. ....++++++. |.+..+++++++ ||.
T Consensus 191 ~vl~IDEi~~l-----------~~~~~~~L~~~le~-----~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 191 GVLFIDEVHML-----------DIESFSFLNRALES-----DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp CEEEEESGGGS-----------BHHHHHHHHHHTTC-----TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred ceEEEhhcccc-----------ChHHHHHHHHHhhC-----cCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 79999999998 34556666665542 12345444443 247789999999 997
Q ss_pred eEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCC
Q 011553 355 RKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFS 434 (483)
Q Consensus 355 ~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s 434 (483)
. +.|++|+.+++..|++.++......-+ +..+..++..+.+.+
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~~~~~------------------------------------~~~l~~l~~~~~~G~ 295 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEEDVEMS------------------------------------EDAYTVLTRIGLETS 295 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTTCCBC------------------------------------HHHHHHHHHHHHHSC
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcCCCCC------------------------------------HHHHHHHHHHhcCCC
Confidence 4 899999999999999988765332211 222445555555457
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 011553 435 GADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 435 ~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~ 470 (483)
.+++.++|+.|...|..+++..|+.+|+.+|+...+
T Consensus 296 ~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 296 LRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSB
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 899999999999999888999999999999998643
No 34
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.85 E-value=4.2e-21 Score=201.60 Aligned_cols=106 Identities=26% Similarity=0.299 Sum_probs=92.4
Q ss_pred CCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC--CceEEEechHHHh
Q 011553 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS--ATFLRVVGSELIQ 263 (483)
Q Consensus 186 ~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~--~~~~~v~~~~l~~ 263 (483)
|...|++|+|++++++.+.+.+... ..+..+++++||+||||||||++|+++|+.++ .+|+.++++++..
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 4456899999999999988877541 22556778999999999999999999999999 8999999999999
Q ss_pred hhcCCchHHHHHHHHHH---hhcCCeEEEEcCCccccccc
Q 011553 264 KYLGDGPKLVRELFRVA---DDLSPSIVFIDEIDAVGTKR 300 (483)
Q Consensus 264 ~~~g~~~~~i~~~f~~a---~~~~p~Il~iDEiD~l~~~r 300 (483)
.+.|+.+. ++.+|..| +...|+||||||+|.++..+
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r 142 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCE 142 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC-
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhccccc
Confidence 99998887 89999999 77889999999999998655
No 35
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.84 E-value=5.9e-20 Score=183.40 Aligned_cols=170 Identities=18% Similarity=0.214 Sum_probs=128.4
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 183 ~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
.+..+.+|++++|.+.+++.+...+.... . ....+.++||+||||||||++|+++|+.++.+|+.++|+.+.
T Consensus 4 ~~~~p~~~~~~ig~~~~~~~l~~~l~~~~-------~-~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 75 (324)
T 1hqc_A 4 LALRPKTLDEYIGQERLKQKLRVYLEAAK-------A-RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIE 75 (324)
T ss_dssp -CCCCCSTTTCCSCHHHHHHHHHHHHHHH-------H-HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCC
T ss_pred cccCcccHHHhhCHHHHHHHHHHHHHHHH-------c-cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccC
Confidence 45567799999999999999988876420 0 113456799999999999999999999999999999887652
Q ss_pred hhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccC-----Cc--------CCC
Q 011553 263 QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG-----FD--------SRG 329 (483)
Q Consensus 263 ~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~-----~~--------~~~ 329 (483)
. ...+...|..+ ...+++|||||+|.+ ....+..++.+++.... .. ...
T Consensus 76 ~------~~~l~~~l~~~-~~~~~~l~lDEi~~l-----------~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 76 K------PGDLAAILANS-LEEGDILFIDEIHRL-----------SRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp S------HHHHHHHHTTT-CCTTCEEEETTTTSC-----------CHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred C------hHHHHHHHHHh-ccCCCEEEEECCccc-----------ccchHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 1 22222233221 245789999999988 34567777777775320 00 113
Q ss_pred CeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCC
Q 011553 330 DVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTL 380 (483)
Q Consensus 330 ~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~ 380 (483)
++++|++||.+..+++++++ ||..++.|++|+.+++..++..++.....
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~ 186 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGV 186 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred CEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence 68899999999999999998 99889999999999999999988875543
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.82 E-value=6.9e-20 Score=181.37 Aligned_cols=259 Identities=19% Similarity=0.260 Sum_probs=158.6
Q ss_pred ccccccHHHHHHHHHHHhcCCCChhhhhhh-CCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh-hhcCC
Q 011553 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDI-GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-KYLGD 268 (483)
Q Consensus 191 ~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~-g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~-~~~g~ 268 (483)
++|+|++++++.|...+..++....+...+ +...+.++||+||||||||++|+++|+.++.+|+.++|+.+.. .|.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 358899999999998886532222211111 1134678999999999999999999999999999999998865 45553
Q ss_pred c-hHHHHHHHHHHh-----hcCCeEEEEcCCccccccccCCCCC-ChHHHHHHHHHHHHhccC-----CcCCCCeEEEEE
Q 011553 269 G-PKLVRELFRVAD-----DLSPSIVFIDEIDAVGTKRYDAHSG-GEREIQRTMLELLNQLDG-----FDSRGDVKVILA 336 (483)
Q Consensus 269 ~-~~~i~~~f~~a~-----~~~p~Il~iDEiD~l~~~r~~~~~~-~~~~~~~~l~~lL~~l~~-----~~~~~~v~vI~t 336 (483)
. ...+..++..+. ...++||||||+|.+.......... .....+..|+.+++.... .....+++||++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 2 345666665331 1235799999999997554211110 011235566666653210 112357889998
Q ss_pred e----CCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhh---ccccchhhHHHHHHHHH
Q 011553 337 T----NRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMT---KDEFSGADIKTRRRIFQ 409 (483)
Q Consensus 337 t----n~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~---t~g~~~~~i~~~~r~~~ 409 (483)
+ +.+..+++++++ ||+..+.|++|+.+++..|++.....+. . .+...... ...++...+..+.+...
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~--~--~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 248 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLT--E--QYKALMATEGVNIAFTTDAVKKIAEAAF 248 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHH--H--HHHHHHHHTTCEEEECHHHHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHH--H--HHHHHHHhcCCeeccCHHHHHHHHHHhh
Confidence 5 567789999998 9998899999999999999984321100 0 00000000 00122222221111110
Q ss_pred HhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhc------CCCccHHHHHHHHHHHH
Q 011553 410 IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER------RMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 410 ~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~------~~~it~ed~~~Al~~~~ 470 (483)
. ....+...+.+++.++|+.+...+..+. ...|+.+|+.+|+....
T Consensus 249 ~---------------~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 249 R---------------VNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp H---------------HHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSS
T ss_pred h---------------hcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhh
Confidence 0 0001124567889999888775544222 12599999999887643
No 37
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.80 E-value=8.2e-19 Score=176.14 Aligned_cols=245 Identities=17% Similarity=0.154 Sum_probs=161.5
Q ss_pred CCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEech------
Q 011553 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGS------ 259 (483)
Q Consensus 186 ~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~------ 259 (483)
.+..+.+++|.+++++.+...+.. +.++||+||||||||++|+++|+.++.+|+.+++.
T Consensus 22 ~~~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 86 (331)
T 2r44_A 22 IDEVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPS 86 (331)
T ss_dssp HHHHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHH
T ss_pred HHHhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChh
Confidence 344567899999999998887754 35799999999999999999999999999999873
Q ss_pred HHHhhhcCCchHHHHHHHHHH-hhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc----C--CcCCCCeE
Q 011553 260 ELIQKYLGDGPKLVRELFRVA-DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD----G--FDSRGDVK 332 (483)
Q Consensus 260 ~l~~~~~g~~~~~i~~~f~~a-~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~----~--~~~~~~v~ 332 (483)
++.+....... ...|... .....+||||||+|.+ ....+..|++.+++.. + .....+++
T Consensus 87 ~l~g~~~~~~~---~~~~~~~~g~l~~~vl~iDEi~~~-----------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~ 152 (331)
T 2r44_A 87 DLIGTMIYNQH---KGNFEVKKGPVFSNFILADEVNRS-----------PAKVQSALLECMQEKQVTIGDTTYPLDNPFL 152 (331)
T ss_dssp HHHEEEEEETT---TTEEEEEECTTCSSEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTEEEECCSSCE
T ss_pred hcCCceeecCC---CCceEeccCcccccEEEEEccccC-----------CHHHHHHHHHHHhcCceeeCCEEEECCCCEE
Confidence 23221110000 0000000 0001269999999987 4567788888887531 1 11234688
Q ss_pred EEEEeCCCC-----CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHH-
Q 011553 333 VILATNRIE-----SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRR- 406 (483)
Q Consensus 333 vI~ttn~~~-----~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r- 406 (483)
||+|+|..+ .+++++++ ||...+.++.|+.+++.+|++.++........ ...++..++..+..
T Consensus 153 viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~---------~~~~~~~~i~~~~~~ 221 (331)
T 2r44_A 153 VLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQV---------QKIVSKNDVLEIRNE 221 (331)
T ss_dssp EEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCC---------CCCSCHHHHHHHHHH
T ss_pred EEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhc---------cccCCHHHHHHHHHH
Confidence 888888543 38999999 99888999999999999999988765432110 11122233322221
Q ss_pred ----------------HHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 011553 407 ----------------IFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 407 ----------------~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~ 470 (483)
.......... .-....-.....++|.+.+.++++.|...|..+++..|+.+|+.+|+..++
T Consensus 222 ~~~v~~~~~~~~~i~~~~~~~r~~~~---~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl 298 (331)
T 2r44_A 222 INKVTISESLEKYIIELVFATRFPAE---YGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDIL 298 (331)
T ss_dssp HHTCBCCHHHHHHHHHHHHHHHSGGG---GTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHhcccc---ccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 1111110000 000000111234779999999999999999999999999999999999987
Q ss_pred hhc
Q 011553 471 FKK 473 (483)
Q Consensus 471 ~~~ 473 (483)
...
T Consensus 299 ~~r 301 (331)
T 2r44_A 299 NHR 301 (331)
T ss_dssp TTT
T ss_pred Hhh
Confidence 543
No 38
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.80 E-value=2.7e-18 Score=160.35 Aligned_cols=208 Identities=19% Similarity=0.219 Sum_probs=148.1
Q ss_pred eecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc-----CCceE
Q 011553 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-----SATFL 254 (483)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l-----~~~~~ 254 (483)
.+.++.++.+|++++|.++.++.+...+... ...+++|+||||||||++++++++.+ ...++
T Consensus 6 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 72 (226)
T 2chg_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFI 72 (226)
T ss_dssp CHHHHTSCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEE
T ss_pred hHHHhcCCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceE
Confidence 3556778889999999999999999988652 23349999999999999999999976 35688
Q ss_pred EEechHHHhhhcCCchHHHHHHHHHH-h-----hcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCC
Q 011553 255 RVVGSELIQKYLGDGPKLVRELFRVA-D-----DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSR 328 (483)
Q Consensus 255 ~v~~~~l~~~~~g~~~~~i~~~f~~a-~-----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~ 328 (483)
.++++.... ...+...+... . ...+.+|+|||+|.+ ....+..+..+++.. .
T Consensus 73 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~l~~~l~~~-----~ 130 (226)
T 2chg_A 73 EMNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-----------TADAQAALRRTMEMY-----S 130 (226)
T ss_dssp EEETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGS-----------CHHHHHHHHHHHHHT-----T
T ss_pred EeccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhc-----------CHHHHHHHHHHHHhc-----C
Confidence 887764321 12222222222 1 245789999999998 334456677777642 3
Q ss_pred CCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHH
Q 011553 329 GDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIF 408 (483)
Q Consensus 329 ~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~ 408 (483)
.++.+|++||.+..+++++.+ |+. .+.+++|+.++...++..++......-+
T Consensus 131 ~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~------------------------- 182 (226)
T 2chg_A 131 KSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKIT------------------------- 182 (226)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBC-------------------------
T ss_pred CCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCC-------------------------
Confidence 578899999999999999998 997 9999999999999999987754332211
Q ss_pred HHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 011553 409 QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKE 467 (483)
Q Consensus 409 ~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~ 467 (483)
...+..++..+.| +.+.+.++++.+...+ ..|+.+|+.+++.
T Consensus 183 -----------~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 183 -----------EDGLEALIYISGG-DFRKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp -----------HHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred -----------HHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 1122334444433 4566667666665443 6899999998875
No 39
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.79 E-value=6.3e-19 Score=179.49 Aligned_cols=179 Identities=19% Similarity=0.252 Sum_probs=125.5
Q ss_pred ccccHHHHHHHHHHHhcCCCChhhhh--hhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhh-hcCCc
Q 011553 193 IGGLDAQIQEIKEAVELPLTHPELYE--DIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK-YLGDG 269 (483)
Q Consensus 193 i~Gl~~~~~~l~e~i~~pl~~~~~~~--~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~-~~g~~ 269 (483)
|+|++.+++.|...+........... .-...++.++||+||||||||++|+++|+.++.+|+.++|+.+... |.|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 68999999999998853211110000 0011356789999999999999999999999999999999998753 66654
Q ss_pred -hHHHHHHHHHH----hhcCCeEEEEcCCccccccccCCCCCChH---HHHHHHHHHHHhcc----------------CC
Q 011553 270 -PKLVRELFRVA----DDLSPSIVFIDEIDAVGTKRYDAHSGGER---EIQRTMLELLNQLD----------------GF 325 (483)
Q Consensus 270 -~~~i~~~f~~a----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~---~~~~~l~~lL~~l~----------------~~ 325 (483)
...+..+|..+ ....++||||||||.+...+.....+.+. .++..|+.+|+... .+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 55667777765 33457899999999998765433222222 26777777776110 01
Q ss_pred cCCCCeEEEEEeCCC----------CC-----------------------------------CChhhcCCCccceEEEcC
Q 011553 326 DSRGDVKVILATNRI----------ES-----------------------------------LDPALLRPGRIDRKIEFP 360 (483)
Q Consensus 326 ~~~~~v~vI~ttn~~----------~~-----------------------------------ld~allr~gR~~~~i~~~ 360 (483)
....+++||+++|.. .. +.|+|++ ||+.++.|+
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 123466777777642 11 6888888 999999999
Q ss_pred CCCHHHHHHHHHH
Q 011553 361 LPDIKTRRRIFQI 373 (483)
Q Consensus 361 ~P~~~~r~~Il~~ 373 (483)
+|+.+++.+|+..
T Consensus 255 pl~~~~~~~I~~~ 267 (363)
T 3hws_A 255 ELSEEALIQILKE 267 (363)
T ss_dssp CCCHHHHHHHHHS
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999885
No 40
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.79 E-value=5.4e-18 Score=170.88 Aligned_cols=258 Identities=16% Similarity=0.184 Sum_probs=154.3
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC-------c---
Q 011553 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA-------T--- 252 (483)
Q Consensus 183 ~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~-------~--- 252 (483)
...++.+|++++|.+.+++.+......+ ...++||+||||||||++|+++|+.++. +
T Consensus 16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~~-------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~ 82 (350)
T 1g8p_A 16 KTRPVFPFSAIVGQEDMKLALLLTAVDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSS 82 (350)
T ss_dssp --CCCCCGGGSCSCHHHHHHHHHHHHCG-------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCC
T ss_pred CCCCCCCchhccChHHHHHHHHHHhhCC-------------CCceEEEECCCCccHHHHHHHHHHhCccccccccccccc
Confidence 3446778999999999887765544321 2345999999999999999999998863 2
Q ss_pred -----------------------eEEEechHHHhhhcCCchHHHHHHHHHH---------hhcCCeEEEEcCCccccccc
Q 011553 253 -----------------------FLRVVGSELIQKYLGDGPKLVRELFRVA---------DDLSPSIVFIDEIDAVGTKR 300 (483)
Q Consensus 253 -----------------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a---------~~~~p~Il~iDEiD~l~~~r 300 (483)
|+.+..........|.. .+...+..+ ....++||||||+|.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l---- 156 (350)
T 1g8p_A 83 PNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLL---- 156 (350)
T ss_dssp SSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS----
T ss_pred cccccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhC----
Confidence 22111110001111110 001112211 0113589999999998
Q ss_pred cCCCCCChHHHHHHHHHHHHhc----cCCc----CCCCeEEEEEeCCCC-CCChhhcCCCccceEEEcCCC-CHHHHHHH
Q 011553 301 YDAHSGGEREIQRTMLELLNQL----DGFD----SRGDVKVILATNRIE-SLDPALLRPGRIDRKIEFPLP-DIKTRRRI 370 (483)
Q Consensus 301 ~~~~~~~~~~~~~~l~~lL~~l----~~~~----~~~~v~vI~ttn~~~-~ld~allr~gR~~~~i~~~~P-~~~~r~~I 370 (483)
....+..|+.+++.- .... ...++++|+|||..+ .++++|++ ||+..+.++.| +.+++..|
T Consensus 157 -------~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~i 227 (350)
T 1g8p_A 157 -------EDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEV 227 (350)
T ss_dssp -------CHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHH
T ss_pred -------CHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHH
Confidence 456677888888752 1110 013789999999744 79999999 99988999999 67778799
Q ss_pred HHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCC---CCHHHHHHHHHHHHH
Q 011553 371 FQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE---FSGADIKAICTEAGL 447 (483)
Q Consensus 371 l~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g---~s~~di~~l~~~A~~ 447 (483)
++.++.... +...+... .+.....+......+......+.+. +..+..++....+ -+.+.+.++++.|..
T Consensus 228 l~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~ls-~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~ 300 (350)
T 1g8p_A 228 IRRRDTYDA-----DPKAFLEE-WRPKDMDIRNQILEARERLPKVEAP-NTALYDCAALCIALGSDGLRGELTLLRSARA 300 (350)
T ss_dssp HHHHHHHHH-----CHHHHHHH-HHHHHHHHHHHHHHHHHHGGGCBCC-HHHHHHHHHHHHHSSSCSHHHHHHHHHHHHH
T ss_pred HHHHHhccc-----Cchhhccc-cccchHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence 987643210 00000000 0000011111111111111222222 2223333333222 267999999999999
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHhhccC
Q 011553 448 LALRERRMKVTHTDFKKAKEKVMFKKKE 475 (483)
Q Consensus 448 ~A~~~~~~~it~ed~~~Al~~~~~~~~~ 475 (483)
.|..+++..|+.+|+.+|+..++.....
T Consensus 301 ~A~~~~~~~v~~~~v~~a~~~~l~~r~~ 328 (350)
T 1g8p_A 301 LAALEGATAVGRDHLKRVATMALSHRLR 328 (350)
T ss_dssp HHHHTTCSBCCHHHHHHHHHHHHGGGCC
T ss_pred HHHHcCCCcCCHHHHHHHHHHHHhhccc
Confidence 9988888899999999999999876544
No 41
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.79 E-value=2.6e-20 Score=192.77 Aligned_cols=169 Identities=20% Similarity=0.246 Sum_probs=84.9
Q ss_pred ccccccHHHHHHHHHHHhcCCCChhhhhhhCCC-CCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh-hhcCC
Q 011553 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIK-PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ-KYLGD 268 (483)
Q Consensus 191 ~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~-~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~-~~~g~ 268 (483)
.+|+|++++++.|..++..++.++.++..+... +++++||+||||||||++|+++|+.++.+|+.++++.+.. .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 468999999999999998776666655554432 5688999999999999999999999999999999999888 59995
Q ss_pred -chHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEE-eCCCCCCChh
Q 011553 269 -GPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILA-TNRIESLDPA 346 (483)
Q Consensus 269 -~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~t-tn~~~~ld~a 346 (483)
.+..++.+|..+.. ++++||++.+.... ......+++..++..++++.....+ +++ ||+++.+|++
T Consensus 95 d~e~~lr~lf~~a~~----~~~~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMK----LVRQQEIAKNRARA------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHH----HHHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHh----cchhhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHH
Confidence 78899999999877 45689988774322 1122347777888888988665554 455 9999999999
Q ss_pred hcCCCccceEEEcCCCCHH-HHHHHH
Q 011553 347 LLRPGRIDRKIEFPLPDIK-TRRRIF 371 (483)
Q Consensus 347 llr~gR~~~~i~~~~P~~~-~r~~Il 371 (483)
|++||||++.|+++.|+.. .+.+|+
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp --------------------------
T ss_pred HHcCCCcceEEEEcCCCCccchhhhh
Confidence 9999999999999999987 677775
No 42
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.79 E-value=6e-18 Score=172.19 Aligned_cols=226 Identities=19% Similarity=0.215 Sum_probs=156.8
Q ss_pred CcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc---------CCceEEEech
Q 011553 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---------SATFLRVVGS 259 (483)
Q Consensus 189 ~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l---------~~~~~~v~~~ 259 (483)
..++++|.++.++.+...+...+. ...+.+++|+||||||||++++++++.+ +.+|+.++|.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 347789999999999998754211 2346689999999999999999999988 7889999986
Q ss_pred HHHh------h----------hcCCch-HHHHHHHHHHhhc-CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHh
Q 011553 260 ELIQ------K----------YLGDGP-KLVRELFRVADDL-SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQ 321 (483)
Q Consensus 260 ~l~~------~----------~~g~~~-~~i~~~f~~a~~~-~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ 321 (483)
.... . ..|... ..+..++...... .|.||||||+|.+...+ ..+..+..++..
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~ 158 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRI 158 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHG
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhc
Confidence 4221 1 112222 2344555554333 47899999999984221 135667777766
Q ss_pred ccCCcCCCCeEEEEEeCCC---CCCChhhcCCCccce-EEEcCCCCHHHHHHHHHHHHcC--CCCCcccchHHHHhhccc
Q 011553 322 LDGFDSRGDVKVILATNRI---ESLDPALLRPGRIDR-KIEFPLPDIKTRRRIFQIHTSR--MTLADDVNLEEFVMTKDE 395 (483)
Q Consensus 322 l~~~~~~~~v~vI~ttn~~---~~ld~allr~gR~~~-~i~~~~P~~~~r~~Il~~~~~~--~~~~~~~~l~~la~~t~g 395 (483)
+.......++.+|++||.+ +.+++.+.+ ||.. .+.|++|+.++...|+..++.. ....-+
T Consensus 159 ~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~------------ 224 (387)
T 2v1u_A 159 NQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD------------ 224 (387)
T ss_dssp GGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC------------
T ss_pred hhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC------------
Confidence 5543214578999999987 678899998 8874 8999999999999999987653 111110
Q ss_pred cchhhHHHHHHHHHHhhccccccccCCHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 011553 396 FSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKD---EFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMF 471 (483)
Q Consensus 396 ~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~---g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~ 471 (483)
+..++.++..+. | ..+.+.++|+.|...|..++...|+.+|+..|+..+..
T Consensus 225 ------------------------~~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 225 ------------------------PDVVPLCAALAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp ------------------------SSHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 112333333333 4 45778889999988887777788999999999887643
No 43
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.78 E-value=2e-18 Score=180.32 Aligned_cols=213 Identities=21% Similarity=0.252 Sum_probs=147.3
Q ss_pred cccCCCCCcccccccHHHH---HHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEec
Q 011553 182 VEKAPLESYADIGGLDAQI---QEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~---~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~ 258 (483)
.+...+.+|++++|.+.++ ..|...+... ...++||+||||||||++|++||+.++.+|+.+++
T Consensus 17 a~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a 83 (447)
T 3pvs_A 17 AARMRPENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISA 83 (447)
T ss_dssp HHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEET
T ss_pred HHHhCCCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEe
Confidence 4566778999999999999 7788877652 22579999999999999999999999999999987
Q ss_pred hHHHhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEE
Q 011553 259 SELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVI 334 (483)
Q Consensus 259 ~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI 334 (483)
.. .....++.+|..+.. ..++||||||||.+. ...+..|+..++. +.+++|
T Consensus 84 ~~-------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~-----------~~~q~~LL~~le~-------~~v~lI 138 (447)
T 3pvs_A 84 VT-------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFN-----------KSQQDAFLPHIED-------GTITFI 138 (447)
T ss_dssp TT-------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT-------TSCEEE
T ss_pred cc-------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhC-----------HHHHHHHHHHHhc-------CceEEE
Confidence 54 233455666665543 357899999999983 2345556666653 457788
Q ss_pred EEe--CCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCC---cccchHHHHhhccccchhhHHHHHHHHH
Q 011553 335 LAT--NRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLA---DDVNLEEFVMTKDEFSGADIKTRRRIFQ 409 (483)
Q Consensus 335 ~tt--n~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~---~~~~l~~la~~t~g~~~~~i~~~~r~~~ 409 (483)
++| |....++++|++ |+. ++.|++|+.++...++...+...... ....+ +
T Consensus 139 ~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i----------~------------ 193 (447)
T 3pvs_A 139 GATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVL----------P------------ 193 (447)
T ss_dssp EEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEEC----------C------------
T ss_pred ecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcC----------C------------
Confidence 877 445679999999 986 88899999999999999888763211 11100 0
Q ss_pred HhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh--cCCCccHHHHHHHHHH
Q 011553 410 IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE--RRMKVTHTDFKKAKEK 468 (483)
Q Consensus 410 ~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~--~~~~it~ed~~~Al~~ 468 (483)
+..++.++..+.| +.+.+.++++.|...+... +...||.+++.+++..
T Consensus 194 ----------~~al~~L~~~~~G-d~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 194 ----------DETRRAIAELVNG-DARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp ----------HHHHHHHHHHHCS-CHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred ----------HHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 1123344444333 4567777777776655311 3346888887777654
No 44
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.77 E-value=4.6e-18 Score=170.10 Aligned_cols=159 Identities=22% Similarity=0.269 Sum_probs=126.5
Q ss_pred ceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEec
Q 011553 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (483)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~ 258 (483)
..|.+++++.+|++++|.+++++.|..++.. ...+..+|++||||||||++|+++|+.++.+|+.+++
T Consensus 14 ~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~ 81 (324)
T 3u61_B 14 HILEQKYRPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNG 81 (324)
T ss_dssp SSHHHHSCCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEET
T ss_pred chHHHhhCCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 5678899999999999999999999999874 2445668889999999999999999999999999998
Q ss_pred hHHHhhhcCCchHHHHHHHHHHhhc-----CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEE
Q 011553 259 SELIQKYLGDGPKLVRELFRVADDL-----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKV 333 (483)
Q Consensus 259 ~~l~~~~~g~~~~~i~~~f~~a~~~-----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~v 333 (483)
+... ...++..+...... .+.||||||+|.+. ..+.+..|+.+++.. ..++.+
T Consensus 82 ~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~----------~~~~~~~L~~~le~~-----~~~~~i 139 (324)
T 3u61_B 82 SDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSG----------LAESQRHLRSFMEAY-----SSNCSI 139 (324)
T ss_dssp TTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGG----------GHHHHHHHHHHHHHH-----GGGCEE
T ss_pred cccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccC----------cHHHHHHHHHHHHhC-----CCCcEE
Confidence 7632 33444444432222 46899999999982 145677777777653 246889
Q ss_pred EEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHH
Q 011553 334 ILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIH 374 (483)
Q Consensus 334 I~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~ 374 (483)
|++||.+..+++++++ ||. ++.|++|+.+++..|+..+
T Consensus 140 I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~ 177 (324)
T 3u61_B 140 IITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQM 177 (324)
T ss_dssp EEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHH
T ss_pred EEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHH
Confidence 9999999999999999 995 8999999999987765543
No 45
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.77 E-value=2.9e-18 Score=167.43 Aligned_cols=169 Identities=19% Similarity=0.237 Sum_probs=114.7
Q ss_pred ccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCch
Q 011553 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGP 270 (483)
Q Consensus 191 ~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~ 270 (483)
..++|.++.++.+....... ...+...+...+.++||+||||||||++|+++|+.++.+|+.+++++. +.|...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~ 106 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSE 106 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCH
T ss_pred cCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCch
Confidence 45678877777766632110 111222234567789999999999999999999999999999988752 334332
Q ss_pred ----HHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCc-CCCCeEEEEEeCCCCCCCh
Q 011553 271 ----KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD-SRGDVKVILATNRIESLDP 345 (483)
Q Consensus 271 ----~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~-~~~~v~vI~ttn~~~~ld~ 345 (483)
..++.+|..+....++||||||||.++..+... ..........|..++ +... ...+++||+|||.++.+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~~---~~~~~~~~~~~ii~ttn~~~~l~~ 182 (272)
T 1d2n_A 107 TAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVLL---KKAPPQGRKLLIIGTTSRKDVLQE 182 (272)
T ss_dssp HHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHHT---TCCCSTTCEEEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHHh---cCccCCCCCEEEEEecCChhhcch
Confidence 456788888877788999999999997554211 122334444444443 3332 2346889999999988877
Q ss_pred -hhcCCCccceEEEcCCCCH-HHHHHHH
Q 011553 346 -ALLRPGRIDRKIEFPLPDI-KTRRRIF 371 (483)
Q Consensus 346 -allr~gR~~~~i~~~~P~~-~~r~~Il 371 (483)
.+.+ ||...+.+|+++. ++...++
T Consensus 183 ~~l~~--rf~~~i~~p~l~~r~~i~~i~ 208 (272)
T 1d2n_A 183 MEMLN--AFSTTIHVPNIATGEQLLEAL 208 (272)
T ss_dssp TTCTT--TSSEEEECCCEEEHHHHHHHH
T ss_pred hhhhc--ccceEEcCCCccHHHHHHHHH
Confidence 5655 9998898877665 3333343
No 46
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.76 E-value=2.3e-17 Score=155.85 Aligned_cols=208 Identities=17% Similarity=0.234 Sum_probs=147.9
Q ss_pred ecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc--------
Q 011553 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (483)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~-------- 252 (483)
+.++..+..|++++|.+..++.|...+... ..+..++|+||||||||++++++++.+...
T Consensus 13 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~ 80 (250)
T 1njg_A 13 LARKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 80 (250)
T ss_dssp HHHHTCCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC
T ss_pred HhhccCCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 456677889999999999999999988641 234579999999999999999999987532
Q ss_pred ----------------eEEEechHHHhhhcCCchHHHHHHHHHHh----hcCCeEEEEcCCccccccccCCCCCChHHHH
Q 011553 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVAD----DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (483)
Q Consensus 253 ----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 312 (483)
++.+.... ......++.++..+. ...+.+|+|||+|.+ .....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-----------~~~~~ 143 (250)
T 1njg_A 81 GVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRHSF 143 (250)
T ss_dssp SCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-----------CHHHH
T ss_pred cccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc-----------cHHHH
Confidence 22222211 011233455555443 234789999999988 33445
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhh
Q 011553 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMT 392 (483)
Q Consensus 313 ~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~ 392 (483)
..++.++.. ...++.+|++||.+..+++++.+ |+ ..+.+++|+.++..+++..++.......+
T Consensus 144 ~~l~~~l~~-----~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--------- 206 (250)
T 1njg_A 144 NALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHE--------- 206 (250)
T ss_dssp HHHHHHHHS-----CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBC---------
T ss_pred HHHHHHHhc-----CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCC---------
Confidence 556666543 24578999999998899999988 86 58999999999999999988765332211
Q ss_pred ccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 011553 393 KDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAK 466 (483)
Q Consensus 393 t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al 466 (483)
...+..++..+.| +++.+.++|+.|... ....||.+|+.+++
T Consensus 207 ---------------------------~~~~~~l~~~~~G-~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 207 ---------------------------PRALQLLARAAEG-SLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp ---------------------------HHHHHHHHHHHTT-CHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred ---------------------------HHHHHHHHHHcCC-CHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 1124456666666 678888888887533 33489999998875
No 47
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.75 E-value=2.3e-17 Score=165.07 Aligned_cols=168 Identities=21% Similarity=0.269 Sum_probs=115.6
Q ss_pred CCCCccccc---ccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEech
Q 011553 186 PLESYADIG---GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGS 259 (483)
Q Consensus 186 ~~~~~~di~---Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~ 259 (483)
|..+|++++ +.......+...+..+ ...+.+++|+||||||||+|++++++.+ +.+++++++.
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 445777776 4555566666666553 1235679999999999999999999988 8899999999
Q ss_pred HHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC
Q 011553 260 ELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (483)
Q Consensus 260 ~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~ 339 (483)
++...+.+.........|.... ..++||||||++.+... ...+..++.+++.+. ..+..+||++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~---------~~~~~~l~~~l~~~~---~~~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGK---------ERTQIEFFHIFNTLY---LLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTC---------HHHHHHHHHHHHHHH---HTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCC---------hHHHHHHHHHHHHHH---HCCCeEEEEecCC
Confidence 8866554332221112232222 23689999999998422 234556666665432 1234555555555
Q ss_pred CC---CCChhhcCCCccc--eEEEcCCCCHHHHHHHHHHHHcCCCC
Q 011553 340 IE---SLDPALLRPGRID--RKIEFPLPDIKTRRRIFQIHTSRMTL 380 (483)
Q Consensus 340 ~~---~ld~allr~gR~~--~~i~~~~P~~~~r~~Il~~~~~~~~~ 380 (483)
+. .++++|++ ||. ..+.|++ +.+++..|++.++....+
T Consensus 142 ~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~ 184 (324)
T 1l8q_A 142 PQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNL 184 (324)
T ss_dssp GGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCC
Confidence 55 68899998 986 6899999 999999999988865443
No 48
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.75 E-value=1.8e-17 Score=167.06 Aligned_cols=164 Identities=19% Similarity=0.247 Sum_probs=122.3
Q ss_pred cceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC------C
Q 011553 178 SVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS------A 251 (483)
Q Consensus 178 ~~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~------~ 251 (483)
...+.+++++.+|++++|.+++++.|...+... ...++||+||||||||++|+++|+.++ .
T Consensus 24 ~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~ 90 (353)
T 1sxj_D 24 QQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS 90 (353)
T ss_dssp --CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc
Confidence 356778899999999999999999999887641 123499999999999999999999864 3
Q ss_pred ceEEEechHHHhhhcCCchHHHHHHHHHHh----------------hcCCeEEEEcCCccccccccCCCCCChHHHHHHH
Q 011553 252 TFLRVVGSELIQKYLGDGPKLVRELFRVAD----------------DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM 315 (483)
Q Consensus 252 ~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----------------~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l 315 (483)
.++.+++++... ...++..+.... ...+.||||||+|.+ ....+..|
T Consensus 91 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l-----------~~~~~~~L 153 (353)
T 1sxj_D 91 RILELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM-----------TADAQSAL 153 (353)
T ss_dssp SEEEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS-----------CHHHHHHH
T ss_pred ceEEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCcc-----------CHHHHHHH
Confidence 577787765311 112222111111 123569999999998 34556777
Q ss_pred HHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCC
Q 011553 316 LELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT 379 (483)
Q Consensus 316 ~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~ 379 (483)
+.++++. ..++.+|++||.+..+++++++ |+. .+.|++|+.++...++...+....
T Consensus 154 l~~le~~-----~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~ 209 (353)
T 1sxj_D 154 RRTMETY-----SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQEN 209 (353)
T ss_dssp HHHHHHT-----TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTT
T ss_pred HHHHHhc-----CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhC
Confidence 7777753 3467788899999999999998 986 899999999999999998776544
No 49
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.75 E-value=2.1e-17 Score=172.51 Aligned_cols=220 Identities=15% Similarity=0.224 Sum_probs=148.3
Q ss_pred CCCCccccc-c--cHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc-----CCceEEEe
Q 011553 186 PLESYADIG-G--LDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-----SATFLRVV 257 (483)
Q Consensus 186 ~~~~~~di~-G--l~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l-----~~~~~~v~ 257 (483)
|..+|++++ | .......+......+ + . +.+++||||||||||+|++++++.+ +.++++++
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 445788876 5 334445555555442 1 2 5679999999999999999999988 78899999
Q ss_pred chHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEe
Q 011553 258 GSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILAT 337 (483)
Q Consensus 258 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~tt 337 (483)
+..+...+.+.........|.......++||||||++.+... ...+..++.+++.+.. .+.. +|++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~---------~~~q~~l~~~l~~l~~---~~~~-iIitt 234 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK---------TGVQTELFHTFNELHD---SGKQ-IVICS 234 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC---------HHHHHHHHHHHHHHHT---TTCE-EEEEE
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC---------hHHHHHHHHHHHHHHH---CCCe-EEEEE
Confidence 988765543322111112233333336789999999998432 1345666666665421 2334 44455
Q ss_pred CC-CCC---CChhhcCCCccc--eEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHh
Q 011553 338 NR-IES---LDPALLRPGRID--RKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIH 411 (483)
Q Consensus 338 n~-~~~---ld~allr~gR~~--~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~ 411 (483)
+. +.. ++++|++ ||. .++.+++|+.+++..|++..+....+.-+
T Consensus 235 ~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---------------------------- 284 (440)
T 2z4s_A 235 DREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP---------------------------- 284 (440)
T ss_dssp SSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC----------------------------
T ss_pred CCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC----------------------------
Confidence 54 443 7899998 986 78999999999999999987753322111
Q ss_pred hccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 011553 412 TSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 412 ~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~ 470 (483)
+..+..++..+.| +.+++..++..+...|...+. .||.+++.+++....
T Consensus 285 --------~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 285 --------EEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp --------TTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTTT
T ss_pred --------HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHh
Confidence 2224556666654 678899999988888765443 699999998887765
No 50
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.74 E-value=4.4e-18 Score=155.20 Aligned_cols=162 Identities=23% Similarity=0.348 Sum_probs=120.4
Q ss_pred cCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc----------CCce
Q 011553 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATF 253 (483)
Q Consensus 184 ~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l----------~~~~ 253 (483)
..++.+|++++|.++.++++.+.+.. ..+.+++|+||||||||++++++++.+ +.++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T 1jbk_A 15 RAEQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 81 (195)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred HHhhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcE
Confidence 34456889999999999999988754 235679999999999999999999986 6789
Q ss_pred EEEechHHHh--hhcCCchHHHHHHHHHHh-hcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCC
Q 011553 254 LRVVGSELIQ--KYLGDGPKLVRELFRVAD-DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD 330 (483)
Q Consensus 254 ~~v~~~~l~~--~~~g~~~~~i~~~f~~a~-~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~ 330 (483)
+.+++..+.. .+.+.....+..++..+. ...+.||+|||+|.+...+.. .........+..++. ..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~---~~~~~~~~~l~~~~~-------~~~ 151 (195)
T 1jbk_A 82 LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DGAMDAGNMLKPALA-------RGE 151 (195)
T ss_dssp EEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHHH-------TTS
T ss_pred EEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc---cchHHHHHHHHHhhc-------cCC
Confidence 9999888763 333444556667776553 345789999999999644311 112223455555553 346
Q ss_pred eEEEEEeCCCC-----CCChhhcCCCccceEEEcCCCCHHHHHHHH
Q 011553 331 VKVILATNRIE-----SLDPALLRPGRIDRKIEFPLPDIKTRRRIF 371 (483)
Q Consensus 331 v~vI~ttn~~~-----~ld~allr~gR~~~~i~~~~P~~~~r~~Il 371 (483)
+.+|++||.++ .+++++++ ||. .+.|+.|+.+++.+|+
T Consensus 152 ~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 152 LHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred eEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 78999998865 78999999 998 7999999999998775
No 51
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.74 E-value=6.2e-18 Score=180.12 Aligned_cols=208 Identities=18% Similarity=0.237 Sum_probs=132.9
Q ss_pred cceecccCCCCCcccccccHHHHHHHHHHHhcCCC-ChhhhhhhCC---CCCCceEEEcCCCCchHHHHHHHHHHcCCce
Q 011553 178 SVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLT-HPELYEDIGI---KPPKGVILYGEPGTGKTLLAKAVANSTSATF 253 (483)
Q Consensus 178 ~~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~-~~~~~~~~g~---~~~~gvLL~GppGtGKT~Laraia~~l~~~~ 253 (483)
..+|++++++.+|++|+|.+.+++.|.+++..... .+..|...|. ..++++||+||||||||++|+++|++++.++
T Consensus 26 ~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~ 105 (516)
T 1sxj_A 26 DKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI 105 (516)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred CCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 36789999999999999999999999999875211 1122222232 2567899999999999999999999999999
Q ss_pred EEEechHHHhhhcCCc-------hHHHHHHHHHH-----hhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHh
Q 011553 254 LRVVGSELIQKYLGDG-------PKLVRELFRVA-----DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQ 321 (483)
Q Consensus 254 ~~v~~~~l~~~~~g~~-------~~~i~~~f~~a-----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ 321 (483)
+.++++++........ ...+..+|..+ ....++||||||+|.+... .......+..++..
T Consensus 106 i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~--------~~~~l~~L~~~l~~ 177 (516)
T 1sxj_A 106 LEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG--------DRGGVGQLAQFCRK 177 (516)
T ss_dssp EEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT--------STTHHHHHHHHHHH
T ss_pred EEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh--------hHHHHHHHHHHHHh
Confidence 9999987543221000 00011222222 2245789999999999532 12234556666654
Q ss_pred ccCCcCCCCeEEEEEeCCCC--CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcC--CCCCcccchHHHHhhccccc
Q 011553 322 LDGFDSRGDVKVILATNRIE--SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR--MTLADDVNLEEFVMTKDEFS 397 (483)
Q Consensus 322 l~~~~~~~~v~vI~ttn~~~--~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~--~~~~~~~~l~~la~~t~g~~ 397 (483)
.++.||+++|... .+ +.+.+ | ...+.|++|+.+++..++...+.. ..+.+ ..+..++..+
T Consensus 178 -------~~~~iIli~~~~~~~~l-~~l~~--r-~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~-~~l~~la~~s---- 241 (516)
T 1sxj_A 178 -------TSTPLILICNERNLPKM-RPFDR--V-CLDIQFRRPDANSIKSRLMTIAIREKFKLDP-NVIDRLIQTT---- 241 (516)
T ss_dssp -------CSSCEEEEESCTTSSTT-GGGTT--T-SEEEECCCCCHHHHHHHHHHHHHHHTCCCCT-THHHHHHHHT----
T ss_pred -------cCCCEEEEEcCCCCccc-hhhHh--c-eEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHc----
Confidence 2233555555433 33 34544 4 459999999999999999876643 33332 2244444433
Q ss_pred hhhHHHHHHHHH
Q 011553 398 GADIKTRRRIFQ 409 (483)
Q Consensus 398 ~~~i~~~~r~~~ 409 (483)
.++++.+++.++
T Consensus 242 ~GdiR~~i~~L~ 253 (516)
T 1sxj_A 242 RGDIRQVINLLS 253 (516)
T ss_dssp TTCHHHHHHHHT
T ss_pred CCcHHHHHHHHH
Confidence 455555555444
No 52
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.73 E-value=8.3e-18 Score=177.00 Aligned_cols=156 Identities=26% Similarity=0.359 Sum_probs=117.0
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc----------CC
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SA 251 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l----------~~ 251 (483)
.+.+.+.++++|+|.++.++.+...+.. ....++||+||||||||++|+++|..+ +.
T Consensus 171 ~~~~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~ 237 (468)
T 3pxg_A 171 TAIAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDK 237 (468)
T ss_dssp HHHTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSC
T ss_pred HHHHhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCC
Confidence 3456677899999999999999988864 234579999999999999999999986 77
Q ss_pred ceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCe
Q 011553 252 TFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDV 331 (483)
Q Consensus 252 ~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v 331 (483)
+|+.++++ ..|.|..+..+..+|..+....|+||||| + ..+.+..|+..| ..+.+
T Consensus 238 ~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~----------~~~a~~~L~~~L-------~~g~v 292 (468)
T 3pxg_A 238 RVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSL-------ARGEL 292 (468)
T ss_dssp CEECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCT-------TSSSC
T ss_pred eEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C----------chhHHHHHHHhh-------cCCCE
Confidence 89998887 67788888888999999988888999999 1 112333333332 24679
Q ss_pred EEEEEeCCCC-----CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCC
Q 011553 332 KVILATNRIE-----SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM 378 (483)
Q Consensus 332 ~vI~ttn~~~-----~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~ 378 (483)
.+|++||.++ .+++++++ ||. .|.|+.|+.+++..|++.++..+
T Consensus 293 ~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~ 341 (468)
T 3pxg_A 293 QCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRY 341 (468)
T ss_dssp EEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTS
T ss_pred EEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHH
Confidence 9999999987 68999999 997 69999999999999999877653
No 53
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.73 E-value=1.9e-17 Score=169.29 Aligned_cols=178 Identities=21% Similarity=0.272 Sum_probs=115.2
Q ss_pred cccccHHHHHHHHHHHhcCCCChhh------------------hhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCce
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPEL------------------YEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATF 253 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~------------------~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~ 253 (483)
+|+|++.+++.|..++..++..... +.. ....+.++||+||||||||++|+++|+.++.+|
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~-~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEE-VELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH-TTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccc-cccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 5789999999999887432211111 001 123566799999999999999999999999999
Q ss_pred EEEechHHH-hhhcCCc-hHHHHHHHHHHh----hcCCeEEEEcCCccccccccCCCC---CChHHHHHHHHHHHHhccC
Q 011553 254 LRVVGSELI-QKYLGDG-PKLVRELFRVAD----DLSPSIVFIDEIDAVGTKRYDAHS---GGEREIQRTMLELLNQLDG 324 (483)
Q Consensus 254 ~~v~~~~l~-~~~~g~~-~~~i~~~f~~a~----~~~p~Il~iDEiD~l~~~r~~~~~---~~~~~~~~~l~~lL~~l~~ 324 (483)
+.++|+.+. ..|.|.. ...+..++..+. ...++||||||+|.+...+..... ......+..|+.+++....
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999998875 3455543 445566665432 235689999999999755322111 1122367788888863210
Q ss_pred -C---------------cCCCCeEEEEEeCC-----------------------------------------CCCCChhh
Q 011553 325 -F---------------DSRGDVKVILATNR-----------------------------------------IESLDPAL 347 (483)
Q Consensus 325 -~---------------~~~~~v~vI~ttn~-----------------------------------------~~~ld~al 347 (483)
+ ....++++|+++|. ...+.|+|
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 0 11256788888872 01256778
Q ss_pred cCCCccceEEEcCCCCHHHHHHHHH
Q 011553 348 LRPGRIDRKIEFPLPDIKTRRRIFQ 372 (483)
Q Consensus 348 lr~gR~~~~i~~~~P~~~~r~~Il~ 372 (483)
++ ||+.++.|++++.++...|+.
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~ 283 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQ 283 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHh
Confidence 77 998899999999999888886
No 54
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.73 E-value=7.2e-17 Score=153.15 Aligned_cols=207 Identities=14% Similarity=0.096 Sum_probs=141.4
Q ss_pred CCCCcccccc---cHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEech
Q 011553 186 PLESYADIGG---LDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGS 259 (483)
Q Consensus 186 ~~~~~~di~G---l~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~ 259 (483)
|..+|++++| ...+++.+..++.. ..+.+++|+||||||||++++++++.+. .+++.+++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 3467888876 35677777776654 2356799999999999999999998764 678888888
Q ss_pred HHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC
Q 011553 260 ELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (483)
Q Consensus 260 ~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~ 339 (483)
++...+.. . +. ....+.+|+|||++.+... ...+..+..+++... ..+.+.+|++|+.
T Consensus 90 ~~~~~~~~----~----~~--~~~~~~vliiDe~~~~~~~---------~~~~~~l~~~l~~~~---~~~~~~ii~~~~~ 147 (242)
T 3bos_A 90 IHASISTA----L----LE--GLEQFDLICIDDVDAVAGH---------PLWEEAIFDLYNRVA---EQKRGSLIVSASA 147 (242)
T ss_dssp GGGGSCGG----G----GT--TGGGSSEEEEETGGGGTTC---------HHHHHHHHHHHHHHH---HHCSCEEEEEESS
T ss_pred HHHHHHHH----H----HH--hccCCCEEEEeccccccCC---------HHHHHHHHHHHHHHH---HcCCCeEEEEcCC
Confidence 76553311 1 11 1134679999999988321 223555666665432 1233435666654
Q ss_pred -CC---CCChhhcCCCccc--eEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhc
Q 011553 340 -IE---SLDPALLRPGRID--RKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTS 413 (483)
Q Consensus 340 -~~---~ld~allr~gR~~--~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~ 413 (483)
+. .+++++.+ ||. ..+.|++|+.+++.+++..++......-+
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~------------------------------ 195 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP------------------------------ 195 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC------------------------------
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC------------------------------
Confidence 33 45688888 885 79999999999999999988764432211
Q ss_pred cccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 011553 414 RMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKE 467 (483)
Q Consensus 414 ~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~ 467 (483)
...++.++..+.| +.+++.++++.+...|..++ ..||.+|+.+++.
T Consensus 196 ------~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 196 ------EDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp ------HHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred ------HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 1223445555544 67889999999988876544 4699999998874
No 55
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.73 E-value=8.9e-18 Score=186.97 Aligned_cols=234 Identities=23% Similarity=0.301 Sum_probs=159.1
Q ss_pred cCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc----------CCce
Q 011553 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATF 253 (483)
Q Consensus 184 ~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l----------~~~~ 253 (483)
.+.+.+|++++|.++.++++.+.+.. ....++||+||||||||++|+++|..+ +..+
T Consensus 179 ~~~~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~ 245 (758)
T 1r6b_X 179 LARVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTI 245 (758)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred HHhcCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEE
Confidence 44556899999999999999888764 245679999999999999999999986 5678
Q ss_pred EEEechHHH--hhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCe
Q 011553 254 LRVVGSELI--QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDV 331 (483)
Q Consensus 254 ~~v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v 331 (483)
+.++++.+. ..+.|..+..++.+|..+....++||||||+|.+...... ..+..+....|.. +-..+++
T Consensus 246 ~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~--~~~~~~~~~~L~~-------~l~~~~~ 316 (758)
T 1r6b_X 246 YSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA--SGGQVDAANLIKP-------LLSSGKI 316 (758)
T ss_dssp EECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCS--SSCHHHHHHHHSS-------CSSSCCC
T ss_pred EEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCC--CcchHHHHHHHHH-------HHhCCCe
Confidence 888877776 3677888889999999998888899999999999765421 1123333332222 2235678
Q ss_pred EEEEEeCCC-----CCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHH
Q 011553 332 KVILATNRI-----ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRR 406 (483)
Q Consensus 332 ~vI~ttn~~-----~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r 406 (483)
.+|++||.+ ..+|++|.+ ||. .+.|+.|+.+++..|++.+...+..... ..++...+..+..
T Consensus 317 ~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~----------v~~~~~al~~~~~ 383 (758)
T 1r6b_X 317 RVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHD----------VRYTAKAVRAAVE 383 (758)
T ss_dssp EEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHT----------CCCCHHHHHHHHH
T ss_pred EEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcC----------CCCCHHHHHHHHH
Confidence 999999864 357899999 998 7999999999999999876543210000 0111222221111
Q ss_pred HHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHH----hcCCCccHHHHHHHHHHH
Q 011553 407 IFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR----ERRMKVTHTDFKKAKEKV 469 (483)
Q Consensus 407 ~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~----~~~~~it~ed~~~Al~~~ 469 (483)
... ....+.+.+..+..++.+|+..+.. .....|+.+|+.+++...
T Consensus 384 ~s~-----------------~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 384 LAV-----------------KYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_dssp HHH-----------------HHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHH
T ss_pred Hhh-----------------hhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHh
Confidence 111 0112234455666777777655543 234678888888887765
No 56
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.72 E-value=1.3e-16 Score=162.74 Aligned_cols=158 Identities=19% Similarity=0.282 Sum_probs=116.7
Q ss_pred ccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc-----------CCceEEEech
Q 011553 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-----------SATFLRVVGS 259 (483)
Q Consensus 191 ~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l-----------~~~~~~v~~~ 259 (483)
++++|.++.++.+...+...+. ...+.+++|+||||||||++|+++++.+ +.+++.++|.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 6789999999999988764211 2345689999999999999999999987 8899999987
Q ss_pred HHH-h----------hh-------cCCc-hHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHH-HHHHH
Q 011553 260 ELI-Q----------KY-------LGDG-PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRT-MLELL 319 (483)
Q Consensus 260 ~l~-~----------~~-------~g~~-~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~-l~~lL 319 (483)
... . .. .+.. ...+..++..+....+ ||||||+|.+.... .+.. +..++
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~----------~~~~~l~~l~ 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRR----------GGDIVLYQLL 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHST----------TSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCC----------CCceeHHHHh
Confidence 643 1 11 1221 2334555555544444 99999999985321 0133 34444
Q ss_pred HhccCCcCCCCeEEEEEeCCC---CCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHc
Q 011553 320 NQLDGFDSRGDVKVILATNRI---ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS 376 (483)
Q Consensus 320 ~~l~~~~~~~~v~vI~ttn~~---~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~ 376 (483)
... .++.||++||.+ +.+++++++ ||...+.|++|+.++...|+..++.
T Consensus 160 ~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 160 RSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp TSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred cCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHH
Confidence 322 679999999987 678999988 9877999999999999999998775
No 57
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.72 E-value=7.8e-16 Score=154.94 Aligned_cols=223 Identities=17% Similarity=0.195 Sum_probs=156.0
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHH
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l 261 (483)
+....+.++++++|.+.+++.+...+.... ..-.++.+++|+||||||||||++++|+.++.++...++..+
T Consensus 16 ~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~--------~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~ 87 (334)
T 1in4_A 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAK--------MRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87 (334)
T ss_dssp -CTTSCSSGGGCCSCHHHHHHHHHHHHHHH--------HHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTC
T ss_pred HHHcCCccHHHccCcHHHHHHHHHHHHHHH--------hcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHh
Confidence 344556789999999999998887765310 001345679999999999999999999999998877665433
Q ss_pred HhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc-------CCc------CC
Q 011553 262 IQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD-------GFD------SR 328 (483)
Q Consensus 262 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~-------~~~------~~ 328 (483)
. ....+..++.. ...+.|+||||++.+. ...+..+...+.... +.. ..
T Consensus 88 ~------~~~~l~~~~~~--~~~~~v~~iDE~~~l~-----------~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l 148 (334)
T 1in4_A 88 V------KQGDMAAILTS--LERGDVLFIDEIHRLN-----------KAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDI 148 (334)
T ss_dssp C------SHHHHHHHHHH--CCTTCEEEEETGGGCC-----------HHHHHHHHHHHHTSCCCC---------------
T ss_pred c------CHHHHHHHHHH--ccCCCEEEEcchhhcC-----------HHHHHHHHHHHHhcccceeeccCcccccccccC
Confidence 1 12223333332 1245799999999883 233445544443221 000 01
Q ss_pred CCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHH
Q 011553 329 GDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIF 408 (483)
Q Consensus 329 ~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~ 408 (483)
..+.++++|+.+..+++++++ ||...+.+++|+.++..+|++.........-+
T Consensus 149 ~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~------------------------- 201 (334)
T 1in4_A 149 QPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIE------------------------- 201 (334)
T ss_dssp CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBC-------------------------
T ss_pred CCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcC-------------------------
Confidence 247788899999999999999 99888999999999999999987654433221
Q ss_pred HHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 011553 409 QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 409 ~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~ 470 (483)
+.....++..+.| +.+.+.++++.+...|..++...||.+++.+|+....
T Consensus 202 -----------~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 202 -----------DAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp -----------HHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHT
T ss_pred -----------HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 2224556666666 4578888999888888777777899999999988754
No 58
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.72 E-value=3.2e-17 Score=162.60 Aligned_cols=170 Identities=21% Similarity=0.345 Sum_probs=118.7
Q ss_pred ccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHh----
Q 011553 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQ---- 263 (483)
Q Consensus 191 ~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~---- 263 (483)
.+++|.+.+++.|...+....... .-...+..++||+||||||||++|+++|+.+ +.+|+.++|+.+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~----~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL----KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC----SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC----CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 357899999999988886521000 0001223469999999999999999999987 45799999886532
Q ss_pred -hhcCCchHH-----HHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCc------CCCCe
Q 011553 264 -KYLGDGPKL-----VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD------SRGDV 331 (483)
Q Consensus 264 -~~~g~~~~~-----i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~------~~~~v 331 (483)
...|..... ...+.........+||||||+|.+ ....+..|+.+++...... ...++
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 161 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA-----------HPDVFNILLQMLDDGRLTDSHGRTVDFRNT 161 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEECTTSCEEECTTE
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc-----------CHHHHHHHHHHHhcCEEEcCCCCEEECCCc
Confidence 222211100 011222333344589999999998 5567888888887532111 11367
Q ss_pred EEEEEeCC--------------------------CCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcC
Q 011553 332 KVILATNR--------------------------IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR 377 (483)
Q Consensus 332 ~vI~ttn~--------------------------~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~ 377 (483)
++|+|||. ...++++|++ ||+.++.|++|+.+++..|++.++..
T Consensus 162 iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~ 231 (311)
T 4fcw_A 162 VIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSY 231 (311)
T ss_dssp EEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHH
T ss_pred EEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 89999998 4468889998 99999999999999999999987654
No 59
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.72 E-value=1.6e-17 Score=175.21 Aligned_cols=235 Identities=17% Similarity=0.130 Sum_probs=143.3
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC--ceEEEech-----HHHhh
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGS-----ELIQK 264 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~~~-----~l~~~ 264 (483)
.|+|.+++++.+..++.. ..++||+||||||||+||+++|+.++. +|..+.+. ++++.
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 478999999888776643 357999999999999999999998853 56555553 33332
Q ss_pred hcCCchHHHHHHHHHHhhc---CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc----CCc-CCCCeEEEEE
Q 011553 265 YLGDGPKLVRELFRVADDL---SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD----GFD-SRGDVKVILA 336 (483)
Q Consensus 265 ~~g~~~~~i~~~f~~a~~~---~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~----~~~-~~~~v~vI~t 336 (483)
+.+..... ...|..+... .++|||||||+.+ ....+..|++++++-. +.. .....++|+|
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~A 155 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAA 155 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGC-----------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-----------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhc
Confidence 22211111 1223222111 4679999999877 5677888888887421 111 1122246888
Q ss_pred eCCCCC---CChhhcCCCccceEEEcCCCCH-HHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhh
Q 011553 337 TNRIES---LDPALLRPGRIDRKIEFPLPDI-KTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHT 412 (483)
Q Consensus 337 tn~~~~---ld~allr~gR~~~~i~~~~P~~-~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~ 412 (483)
||.+.. +.+++++ ||...+.++.|+. +++..|+..+......... ...-++..++..+...+.
T Consensus 156 TN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~--------~~~~~~~e~l~~~~~~~~--- 222 (500)
T 3nbx_X 156 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVP--------DALQVTDEEYERWQKEIG--- 222 (500)
T ss_dssp ESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSC--------TTTSBCHHHHHHHHHHHT---
T ss_pred cccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCC--------ccceecHHHHHHHHhcCC---
Confidence 886322 4469999 9998999999987 6788888865432211100 011233333333322221
Q ss_pred ccccccccCCHHHHHh---------cCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q 011553 413 SRMTLADDVNLEEFVM---------TKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKV 469 (483)
Q Consensus 413 ~~~~~~~~~~l~~la~---------~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~ 469 (483)
...+.+.+ .+.++. ...+.|.|.+.++++.|...|..+++..|+++|+. ++..+
T Consensus 223 -~v~v~d~v-~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~v 285 (500)
T 3nbx_X 223 -EITLPDHV-FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDC 285 (500)
T ss_dssp -TCBCCHHH-HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGT
T ss_pred -cccCchHH-HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhh
Confidence 11111111 111111 13478999999999999999999999999999988 44433
No 60
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.72 E-value=1.6e-16 Score=157.60 Aligned_cols=223 Identities=20% Similarity=0.250 Sum_probs=148.7
Q ss_pred eecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc-----CCceE
Q 011553 180 MKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-----SATFL 254 (483)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l-----~~~~~ 254 (483)
.|.+++++.+|++++|.+.+++.|...+... . ..++||+||||||||++|+++|+.+ ..+|+
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~------------~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 72 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERK------------N-IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFI 72 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTT------------C-CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCE
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhCC------------C-CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeE
Confidence 4667888899999999999999998877541 2 2249999999999999999999986 34688
Q ss_pred EEechHHHhhhcCCchHHHHHHHHHHh--hcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeE
Q 011553 255 RVVGSELIQKYLGDGPKLVRELFRVAD--DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVK 332 (483)
Q Consensus 255 ~v~~~~l~~~~~g~~~~~i~~~f~~a~--~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~ 332 (483)
.+++++..+ .......+..+..... ...+.||+|||+|.+. .+.+..|..++ +. ...++.
T Consensus 73 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~l---e~--~~~~~~ 134 (319)
T 2chq_A 73 EMNASDERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------ADAQAALRRTM---EM--YSKSCR 134 (319)
T ss_dssp EEETTSTTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC-----------HHHHHTTGGGT---SS--SSSSEE
T ss_pred EEeCccccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC-----------HHHHHHHHHHH---Hh--cCCCCe
Confidence 888876422 1122222332221111 1347899999999982 23344444333 32 245789
Q ss_pred EEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcc-cchHHHHhhccccchhhHHHHHHHHHHh
Q 011553 333 VILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADD-VNLEEFVMTKDEFSGADIKTRRRIFQIH 411 (483)
Q Consensus 333 vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~t~g~~~~~i~~~~r~~~~~ 411 (483)
+|++||.+..+.+++.+ |+. .+.|++|+.++...++..++......-+ ..+..++. .+++++..+...++..
T Consensus 135 ~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~----~~~G~~r~~~~~l~~~ 207 (319)
T 2chq_A 135 FILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIY----ISGGDFRKAINALQGA 207 (319)
T ss_dssp EEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHH----TTTTCHHHHHHHHHHH
T ss_pred EEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HcCCCHHHHHHHHHHH
Confidence 99999999999999998 886 8999999999999999988876554322 22444443 3455666665555543
Q ss_pred hccccccccCCHHHHHhcCCCCCHHHHHHHHH
Q 011553 412 TSRMTLADDVNLEEFVMTKDEFSGADIKAICT 443 (483)
Q Consensus 412 ~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~ 443 (483)
... ...+..+.+..........++..++.
T Consensus 208 ~~~---~~~i~~~~v~~~~~~~~~~~~~~l~~ 236 (319)
T 2chq_A 208 AAI---GEVVDADTIYQITATARPEEMTELIQ 236 (319)
T ss_dssp HHS---SSCBCHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHc---CCCCCHHHHHHHHCCCCHHHHHHHHH
Confidence 321 12455555555555555555554444
No 61
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.72 E-value=8.4e-17 Score=179.10 Aligned_cols=162 Identities=25% Similarity=0.341 Sum_probs=123.3
Q ss_pred ccccccHHHHHHHHHHHhcCCCChhhhhhhCCC---CC-CceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHh
Q 011553 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIK---PP-KGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQ 263 (483)
Q Consensus 191 ~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~---~~-~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~ 263 (483)
.+++|++.+++.+...+.... .+.. .| .++||+||||||||++|+++|+.+ +.+|++++|+++..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~--------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRAR--------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHT--------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CcCcChHHHHHHHHHHHHHHH--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 468999999999999887531 1211 22 259999999999999999999987 67999999999887
Q ss_pred hhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCC------cCCCCeEEEEEe
Q 011553 264 KYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF------DSRGDVKVILAT 337 (483)
Q Consensus 264 ~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~------~~~~~v~vI~tt 337 (483)
.+... ...++...+...++||||||||.+ +.+.+..|+++++.-.-. ....+++||+||
T Consensus 563 ~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 563 KHSTS----GGQLTEKVRRKPYSVVLLDAIEKA-----------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp SCCCC-------CHHHHHHCSSSEEEEECGGGS-----------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred ccccc----cchhhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 66554 122333444556689999999988 667889999999863211 123478999999
Q ss_pred CCCCC------------CChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcC
Q 011553 338 NRIES------------LDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR 377 (483)
Q Consensus 338 n~~~~------------ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~ 377 (483)
|.+.. +.|+|++ ||+.+|.|++|+.+++..|+..++..
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~ 677 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQ 677 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 97554 7889988 99989999999999999999877654
No 62
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.70 E-value=3.5e-16 Score=158.85 Aligned_cols=226 Identities=19% Similarity=0.251 Sum_probs=148.6
Q ss_pred CcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc------CCceEEEechHHH
Q 011553 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST------SATFLRVVGSELI 262 (483)
Q Consensus 189 ~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l------~~~~~~v~~~~l~ 262 (483)
..++++|.++.++.|.+.+...+. ...+..++|+||||||||+|++++++.+ +.+++.++|....
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 347789999999999988764211 1345679999999999999999999988 8899999986532
Q ss_pred h------hh----------cCCc-hHHHHHHHHHHhhcC-CeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccC
Q 011553 263 Q------KY----------LGDG-PKLVRELFRVADDLS-PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG 324 (483)
Q Consensus 263 ~------~~----------~g~~-~~~i~~~f~~a~~~~-p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~ 324 (483)
. .. .+.. ......++....... |.||+|||++.+.... ..+....+..+++.
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~-------~~~~l~~l~~~~~~--- 158 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY-------NDDILYKLSRINSE--- 158 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS-------CSTHHHHHHHHHHS---
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC-------cCHHHHHHhhchhh---
Confidence 1 11 1111 223444555444433 8899999999985321 11233333444432
Q ss_pred CcCCCCeEEEEEeCCC---CCCChhhcCCCccc-eEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhh
Q 011553 325 FDSRGDVKVILATNRI---ESLDPALLRPGRID-RKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGAD 400 (483)
Q Consensus 325 ~~~~~~v~vI~ttn~~---~~ld~allr~gR~~-~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~ 400 (483)
. ...++.+|++||.+ ..+++.+.+ ||. +.+.|++++.++..+|+..++....... .++..
T Consensus 159 ~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~------------~~~~~- 222 (386)
T 2qby_A 159 V-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPG------------VLPDN- 222 (386)
T ss_dssp C-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSS------------CSCHH-
T ss_pred c-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCC------------CCCHH-
Confidence 2 34578999999976 467788887 775 5899999999999999997764211000 01111
Q ss_pred HHHHHHHHHHhhccccccccCCHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 011553 401 IKTRRRIFQIHTSRMTLADDVNLEEFVMTKD--EFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 401 i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~--g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~ 470 (483)
....++..+. .-+.+.+..+|+.|...|..++...|+.+|+..|+..+.
T Consensus 223 ---------------------~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 223 ---------------------VIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp ---------------------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 1122222222 124566777888888888777778899999998887765
No 63
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.8e-17 Score=164.91 Aligned_cols=160 Identities=7% Similarity=0.049 Sum_probs=116.8
Q ss_pred ccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc----------CCceEEEechHHH
Q 011553 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATFLRVVGSELI 262 (483)
Q Consensus 193 i~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l----------~~~~~~v~~~~l~ 262 (483)
+.|.++.+..|..++... +....+.+++|+||||||||++++++++++ ...+++++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~---------i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDS---------LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHH---------hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 568888888888777642 223567889999999999999999999988 3468889986533
Q ss_pred h----------hhc------CCchHHHHHHHHHH--hhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccC
Q 011553 263 Q----------KYL------GDGPKLVRELFRVA--DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG 324 (483)
Q Consensus 263 ~----------~~~------g~~~~~i~~~f~~a--~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~ 324 (483)
+ ... +.....+..+|... ....+.||||||+|.+. . +..|..+++-..
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~----------~---q~~L~~l~~~~~- 158 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL----------S---EKILQYFEKWIS- 158 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC----------C---THHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh----------c---chHHHHHHhccc-
Confidence 2 222 33456678888865 34567899999999995 1 244555554221
Q ss_pred CcCCCCeEEEEEeCCCCCC----ChhhcCCCccc-eEEEcCCCCHHHHHHHHHHHHcCC
Q 011553 325 FDSRGDVKVILATNRIESL----DPALLRPGRID-RKIEFPLPDIKTRRRIFQIHTSRM 378 (483)
Q Consensus 325 ~~~~~~v~vI~ttn~~~~l----d~allr~gR~~-~~i~~~~P~~~~r~~Il~~~~~~~ 378 (483)
....++.||+++|..+.. ++++.+ ||. .+|.|++|+.++...|++..+...
T Consensus 159 -~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 159 -SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp -CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred -ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 235689999999987653 344566 886 589999999999999999887653
No 64
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.69 E-value=4e-16 Score=158.39 Aligned_cols=220 Identities=16% Similarity=0.216 Sum_probs=143.0
Q ss_pred ecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc--------
Q 011553 181 KVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT-------- 252 (483)
Q Consensus 181 ~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~-------- 252 (483)
+.+++.+.+|++++|.+.+++.|...+... ..+..+||+||+|||||++++++|+.++..
T Consensus 6 l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 73 (373)
T 1jr3_A 6 LARKWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 (373)
T ss_dssp HHHHTCCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCC
T ss_pred HHHhhCCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 356678889999999999999999988641 335568999999999999999999987642
Q ss_pred ----------------eEEEechHHHhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCCccccccccCCCCCChHHHH
Q 011553 253 ----------------FLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQ 312 (483)
Q Consensus 253 ----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~ 312 (483)
++.+++.. ......++.++..+.. ..+.||+|||+|.+ +...+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~ 136 (373)
T 1jr3_A 74 GVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRHSF 136 (373)
T ss_dssp SSSHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGS-----------CHHHH
T ss_pred cccHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchh-----------cHHHH
Confidence 22222211 0112335566666543 23679999999998 33455
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCccc-chHHHHh
Q 011553 313 RTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDV-NLEEFVM 391 (483)
Q Consensus 313 ~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~-~l~~la~ 391 (483)
..|+.++++ ...++++|++|+.+..+.+.+++ |+ ..+.|++|+.++...++..++...+...+. .+..++.
T Consensus 137 ~~Ll~~le~-----~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~ 208 (373)
T 1jr3_A 137 NALLKTLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 208 (373)
T ss_dssp HHHHHHHHS-----CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHH
T ss_pred HHHHHHHhc-----CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666666653 34578999999998889999998 87 589999999999999999887654433222 2344444
Q ss_pred hccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHH
Q 011553 392 TKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICT 443 (483)
Q Consensus 392 ~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~ 443 (483)
.+.| ..+.+.++...+.... ...++.+.+...........+..++.
T Consensus 209 ~~~G-~~r~~~~~l~~~~~~~-----~~~i~~~~v~~~~~~~~~~~~~~l~~ 254 (373)
T 1jr3_A 209 AAEG-SLRDALSLTDQAIASG-----DGQVSTQAVSAMLGTLDDDQALSLVE 254 (373)
T ss_dssp HSSS-CHHHHHHHHHHHHHHT-----TTCBCHHHHHHHTTCCCHHHHHHHHH
T ss_pred HCCC-CHHHHHHHHHHHHHhc-----CCcccHHHHHHHhCCCCHHHHHHHHH
Confidence 4433 2333333222221111 12355555555554444444444444
No 65
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=1.4e-15 Score=151.25 Aligned_cols=224 Identities=21% Similarity=0.242 Sum_probs=151.6
Q ss_pred ceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC-----Cce
Q 011553 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS-----ATF 253 (483)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~-----~~~ 253 (483)
..+.+++++.+|++++|.+.+++.|...+... . ..++||+||||||||++|+++|+.+. ..+
T Consensus 13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~------------~-~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~ 79 (327)
T 1iqp_A 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG------------S-MPHLLFAGPPGVGKTTAALALARELFGENWRHNF 79 (327)
T ss_dssp SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT------------C-CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHE
T ss_pred CchhhccCCCCHHHhhCCHHHHHHHHHHHHcC------------C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCce
Confidence 45778899999999999999999999888641 1 23499999999999999999999863 357
Q ss_pred EEEechHHHhhhcCCchHHHHHHHHHH--hhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCe
Q 011553 254 LRVVGSELIQKYLGDGPKLVRELFRVA--DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDV 331 (483)
Q Consensus 254 ~~v~~~~l~~~~~g~~~~~i~~~f~~a--~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v 331 (483)
+.+++++..+. ......+....... ....+.||+|||+|.+ ..+.+..|+.+++.. ..++
T Consensus 80 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~L~~~le~~-----~~~~ 141 (327)
T 1iqp_A 80 LELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADAL-----------TQDAQQALRRTMEMF-----SSNV 141 (327)
T ss_dssp EEEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS-----------CHHHHHHHHHHHHHT-----TTTE
T ss_pred EEeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC-----------CHHHHHHHHHHHHhc-----CCCC
Confidence 78887654321 11111222211111 1134689999999998 345567777777642 4578
Q ss_pred EEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcc-cchHHHHhhccccchhhHHHHHHHHHH
Q 011553 332 KVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADD-VNLEEFVMTKDEFSGADIKTRRRIFQI 410 (483)
Q Consensus 332 ~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~-~~l~~la~~t~g~~~~~i~~~~r~~~~ 410 (483)
.+|++||.++.+.+++.+ |+. .+.|++|+.++...++...+......-+ ..+..++.. +.+++..+...++.
T Consensus 142 ~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~----~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 142 RFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYI----AEGDMRRAINILQA 214 (327)
T ss_dssp EEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHH----HTTCHHHHHHHHHH
T ss_pred eEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH----CCCCHHHHHHHHHH
Confidence 899999999999999988 886 8999999999999999988765554322 223444443 34566665555544
Q ss_pred hhccccccccCCHHHHHhcCCCCCHHHHHHHHH
Q 011553 411 HTSRMTLADDVNLEEFVMTKDEFSGADIKAICT 443 (483)
Q Consensus 411 ~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~ 443 (483)
.... ...++.+.+..........++..++.
T Consensus 215 ~~~~---~~~i~~~~v~~~~~~~~~~~i~~l~~ 244 (327)
T 1iqp_A 215 AAAL---DKKITDENVFMVASRARPEDIREMML 244 (327)
T ss_dssp HHTT---CSEECHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHhc---CCCCCHHHHHHHHCCCCHHHHHHHHH
Confidence 3321 11345555555555555555555544
No 66
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.69 E-value=1.4e-16 Score=179.37 Aligned_cols=168 Identities=23% Similarity=0.339 Sum_probs=118.8
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc----------CCc
Q 011553 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SAT 252 (483)
Q Consensus 183 ~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l----------~~~ 252 (483)
+.+.+.++++++|.++.++++.+.+.. ....+++|+||||||||++|+++|+.+ +.+
T Consensus 162 ~~~r~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~ 228 (854)
T 1qvr_A 162 RLAAEGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKR 228 (854)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCE
T ss_pred HHHhcCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCe
Confidence 345667899999999999999887754 235679999999999999999999987 789
Q ss_pred eEEEechHHH--hhhcCCchHHHHHHHHHHhhc-CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCC
Q 011553 253 FLRVVGSELI--QKYLGDGPKLVRELFRVADDL-SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRG 329 (483)
Q Consensus 253 ~~~v~~~~l~--~~~~g~~~~~i~~~f~~a~~~-~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~ 329 (483)
++.++++.+. ..+.|+....+..+|..+... .|+||||||+|.+.+... ..+..+....+..++. .+
T Consensus 229 ~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~---~~g~~~~~~~L~~~l~-------~~ 298 (854)
T 1qvr_A 229 IVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGK---AEGAVDAGNMLKPALA-------RG 298 (854)
T ss_dssp EEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH-------TT
T ss_pred EEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCC---ccchHHHHHHHHHHHh-------CC
Confidence 9999999887 467888888899999988765 689999999999965431 1223345555666664 35
Q ss_pred CeEEEEEeCCCC----CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHc
Q 011553 330 DVKVILATNRIE----SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS 376 (483)
Q Consensus 330 ~v~vI~ttn~~~----~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~ 376 (483)
.+.+|++||.++ .++++|.+ ||+ .+.|+.|+.+++..|++.++.
T Consensus 299 ~i~~I~at~~~~~~~~~~d~aL~r--Rf~-~i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 299 ELRLIGATTLDEYREIEKDPALER--RFQ-PVYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp CCCEEEEECHHHHHHHTTCTTTCS--CCC-CEEECCCCHHHHHHHHHHHHH
T ss_pred CeEEEEecCchHHhhhccCHHHHh--CCc-eEEeCCCCHHHHHHHHHhhhh
Confidence 688999998764 47899999 998 599999999999999986654
No 67
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.68 E-value=9.4e-17 Score=146.03 Aligned_cols=155 Identities=26% Similarity=0.375 Sum_probs=115.0
Q ss_pred cCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc----------CCce
Q 011553 184 KAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SATF 253 (483)
Q Consensus 184 ~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l----------~~~~ 253 (483)
...+.+|++++|.+..++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~ 81 (187)
T 2p65_A 15 LARAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKL 81 (187)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEE
T ss_pred HHhccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeE
Confidence 34456789999999999999888754 235679999999999999999999987 7788
Q ss_pred EEEechHHHhh--hcCCchHHHHHHHHHHhhc-CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCC
Q 011553 254 LRVVGSELIQK--YLGDGPKLVRELFRVADDL-SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD 330 (483)
Q Consensus 254 ~~v~~~~l~~~--~~g~~~~~i~~~f~~a~~~-~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~ 330 (483)
+.+++..+... +.+.....+..++..+... .|.+|||||+|.+...+.. .....+....+..++. ..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~--~~~~~~~~~~l~~~~~-------~~~ 152 (187)
T 2p65_A 82 VSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAV--AEGALDAGNILKPMLA-------RGE 152 (187)
T ss_dssp EEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSS--CTTSCCTHHHHHHHHH-------TTC
T ss_pred EEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccc--cccchHHHHHHHHHHh-------cCC
Confidence 88988877642 3333445566777666554 6789999999999644321 1112334455555554 356
Q ss_pred eEEEEEeCCCC-----CCChhhcCCCccceEEEcCCCC
Q 011553 331 VKVILATNRIE-----SLDPALLRPGRIDRKIEFPLPD 363 (483)
Q Consensus 331 v~vI~ttn~~~-----~ld~allr~gR~~~~i~~~~P~ 363 (483)
+.+|++||.+. .+++++++ ||. .+.++.|+
T Consensus 153 ~~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 153 LRCIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp SCEEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred eeEEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 88999998765 68999999 998 59999886
No 68
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.68 E-value=4.8e-15 Score=147.15 Aligned_cols=179 Identities=18% Similarity=0.221 Sum_probs=130.6
Q ss_pred ceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc-----CCce
Q 011553 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST-----SATF 253 (483)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l-----~~~~ 253 (483)
..+.+++++.+|++++|.+.+++.|...+... ..+. ++|+||||+|||++|+++++.+ ...+
T Consensus 9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~ 75 (323)
T 1sxj_B 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDG------------NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGV 75 (323)
T ss_dssp CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSC------------CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHE
T ss_pred CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcC------------CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCE
Confidence 34667788899999999999999999988641 2233 9999999999999999999986 3457
Q ss_pred EEEechHHHhhhcCCchHHHHHHHHHHh-------hcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCc
Q 011553 254 LRVVGSELIQKYLGDGPKLVRELFRVAD-------DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD 326 (483)
Q Consensus 254 ~~v~~~~l~~~~~g~~~~~i~~~f~~a~-------~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~ 326 (483)
+.+++++.. ....++.++.... ...+.||+|||+|.+ ....+..|+.++++
T Consensus 76 ~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l-----------~~~~~~~L~~~le~----- 133 (323)
T 1sxj_B 76 LELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSM-----------TAGAQQALRRTMEL----- 133 (323)
T ss_dssp EEECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGS-----------CHHHHHTTHHHHHH-----
T ss_pred EEecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccC-----------CHHHHHHHHHHHhc-----
Confidence 777765421 2334455554433 223789999999998 33445666777764
Q ss_pred CCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCc-ccchHHHHhhccc
Q 011553 327 SRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAD-DVNLEEFVMTKDE 395 (483)
Q Consensus 327 ~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~-~~~l~~la~~t~g 395 (483)
...++.+|++||.+..+.+++.+ |+. .+.|++|+.++...++..++......- +..+..++..+.|
T Consensus 134 ~~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G 200 (323)
T 1sxj_B 134 YSNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG 200 (323)
T ss_dssp TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT
T ss_pred cCCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 24578899999999999999998 886 999999999999999998765433321 2234455554433
No 69
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.68 E-value=4.4e-17 Score=176.00 Aligned_cols=250 Identities=18% Similarity=0.164 Sum_probs=158.2
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEE----echHHHhhh--
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRV----VGSELIQKY-- 265 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v----~~~~l~~~~-- 265 (483)
.|+|.+++++.+...+... .+.......+....++||+||||||||+||+++|+.++..++.. ++..+....
T Consensus 296 ~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred hhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 5789998877764433221 00000001223344799999999999999999999988765442 222222111
Q ss_pred ---cCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc------CC--cCCCCeEEE
Q 011553 266 ---LGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD------GF--DSRGDVKVI 334 (483)
Q Consensus 266 ---~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~------~~--~~~~~v~vI 334 (483)
.|... .....+..| ..+|+||||||.+ ..+.+..|+++|++-. +. ....++.||
T Consensus 374 ~~~~g~~~-~~~G~l~~A---~~gil~IDEid~l-----------~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 374 EKGTGEYY-LEAGALVLA---DGGIAVIDEIDKM-----------RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp GGGTSSCS-EEECHHHHH---SSSEECCTTTTCC-----------CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred cccccccc-ccCCeeEec---CCCcEEeehhhhC-----------CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 11110 001122233 2379999999998 4456788888887422 11 113478999
Q ss_pred EEeCCCC-------------CCChhhcCCCccce-EEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhh
Q 011553 335 LATNRIE-------------SLDPALLRPGRIDR-KIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGAD 400 (483)
Q Consensus 335 ~ttn~~~-------------~ld~allr~gR~~~-~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~ 400 (483)
+|||.+. .++++|++ ||+. .+..+.|+.+ ...|++..+...... .....++..+
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~---------~~~~~l~~~~ 506 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGK---------STKNIIDIDT 506 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCC---------SSSSTTCCTT
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhcc---------ccccCCCHHH
Confidence 9999876 89999999 9975 5555667777 777887776644321 1124455666
Q ss_pred HHHHHHHHHHhhccccccccCCHHHHHhc--------------CCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHH
Q 011553 401 IKTRRRIFQIHTSRMTLADDVNLEEFVMT--------------KDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAK 466 (483)
Q Consensus 401 i~~~~r~~~~~~~~~~~~~~~~l~~la~~--------------~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al 466 (483)
+..++..+.....+ .+. +...+.+... ..+.|.|.+.++++-|...|..+.+..|+.+|+.+|+
T Consensus 507 l~~~i~~ar~~~~p-~ls-~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai 584 (595)
T 3f9v_A 507 LRKYIAYARKYVTP-KIT-SEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAI 584 (595)
T ss_dssp THHHHHHHHHHHCC-CCC-CCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHH
Confidence 66665544433222 111 2223333322 3477899999999999999998999999999999999
Q ss_pred HHHHhh
Q 011553 467 EKVMFK 472 (483)
Q Consensus 467 ~~~~~~ 472 (483)
+-+...
T Consensus 585 ~l~~~s 590 (595)
T 3f9v_A 585 NIMRLF 590 (595)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 70
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.68 E-value=2.1e-16 Score=175.88 Aligned_cols=165 Identities=20% Similarity=0.322 Sum_probs=123.1
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhCCC----CCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhh---
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIK----PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK--- 264 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~----~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~--- 264 (483)
+++|++++++.|..++... ..|+. +..++||+||||||||++|+++|+.++.+|++++|+++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 4789999998888877542 22322 23369999999999999999999999999999999987653
Q ss_pred --hcCCchHHH-----HHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCc------CCCCe
Q 011553 265 --YLGDGPKLV-----RELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD------SRGDV 331 (483)
Q Consensus 265 --~~g~~~~~i-----~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~------~~~~v 331 (483)
.+|..+..+ ..+....+...++||||||||.+ ..+.+..|+++++.-.-.. .-.++
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 599 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNILLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTTEEEECTTE
T ss_pred hhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCcccc-----------CHHHHHHHHHHhcCcEEEcCCCCEEecCCe
Confidence 222222111 12344445556799999999988 5678888888887522111 11468
Q ss_pred EEEEEeCCCC-------------------------CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcC
Q 011553 332 KVILATNRIE-------------------------SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR 377 (483)
Q Consensus 332 ~vI~ttn~~~-------------------------~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~ 377 (483)
+||+|||... .++|+|++ ||+.+|.|++|+.+++..|+..++..
T Consensus 600 ~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~ 668 (758)
T 1r6b_X 600 VLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_dssp EEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred EEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHH
Confidence 9999999754 57889988 99999999999999999999988754
No 71
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.67 E-value=1.5e-15 Score=154.83 Aligned_cols=224 Identities=16% Similarity=0.157 Sum_probs=150.3
Q ss_pred cccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCC--ceEEEcCCCCchHHHHHHHHHHc----CCceEEEechHHHh
Q 011553 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPK--GVILYGEPGTGKTLLAKAVANST----SATFLRVVGSELIQ 263 (483)
Q Consensus 190 ~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~--gvLL~GppGtGKT~Laraia~~l----~~~~~~v~~~~l~~ 263 (483)
.++++|.++.++.|..++...+. + ..+. +++|+||||||||++++++++.+ +..++.++|.....
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~--------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLR--------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHH--------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 36789999999999988865211 1 2234 79999999999999999999988 56788898754321
Q ss_pred ------h---hc-------CCch-HHHHHHHHHHhh-cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCC
Q 011553 264 ------K---YL-------GDGP-KLVRELFRVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF 325 (483)
Q Consensus 264 ------~---~~-------g~~~-~~i~~~f~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~ 325 (483)
. .. +... .....+...... ..|.||+|||+|.+ +...+..|..++..+..
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~~~~~~~L~~~~~~~~~- 154 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------APDILSTFIRLGQEADK- 154 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------CHHHHHHHHHHTTCHHH-
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------chHHHHHHHHHHHhCCC-
Confidence 1 01 1111 222233332222 34789999999988 33455555555543211
Q ss_pred cCCCCeEEEEEeCCC---CCCChhhcCCCccce-EEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhH
Q 011553 326 DSRGDVKVILATNRI---ESLDPALLRPGRIDR-KIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADI 401 (483)
Q Consensus 326 ~~~~~v~vI~ttn~~---~~ld~allr~gR~~~-~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i 401 (483)
....++.||++||.+ +.+++.+.+ ||.. .+.|++++.++...++...+........ ++
T Consensus 155 ~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~------------~~---- 216 (389)
T 1fnn_A 155 LGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGS------------YS---- 216 (389)
T ss_dssp HSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTS------------SC----
T ss_pred CCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCC------------CC----
Confidence 001478999999987 678888887 8864 8999999999999999877653110000 00
Q ss_pred HHHHHHHHHhhccccccccCCHHHHHhcCC--------CCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 011553 402 KTRRRIFQIHTSRMTLADDVNLEEFVMTKD--------EFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVM 470 (483)
Q Consensus 402 ~~~~r~~~~~~~~~~~~~~~~l~~la~~~~--------g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~ 470 (483)
+..+..++..+. +-..+.+.++|+.|...|..++...|+.+|+..++..+.
T Consensus 217 ------------------~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 217 ------------------EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp ------------------HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred ------------------HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 112333444442 124577888999999888877888899999999888764
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.67 E-value=4.1e-16 Score=173.58 Aligned_cols=156 Identities=26% Similarity=0.349 Sum_probs=117.6
Q ss_pred cccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc----------CC
Q 011553 182 VEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----------SA 251 (483)
Q Consensus 182 ~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l----------~~ 251 (483)
.+.+.+..+++|+|.++.++++.+.+.. ....++||+||||||||++|+++|+.+ +.
T Consensus 171 ~~~~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~ 237 (758)
T 3pxi_A 171 TAIAKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDK 237 (758)
T ss_dssp HHHTTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSC
T ss_pred HHHHhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCC
Confidence 3456677899999999999999998764 235579999999999999999999997 77
Q ss_pred ceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCe
Q 011553 252 TFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDV 331 (483)
Q Consensus 252 ~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v 331 (483)
+++.+++ ...|.|+.+..++.+|..+....|+||||| + ..+.+..|+..+ ..+.+
T Consensus 238 ~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~----------~~~~~~~L~~~l-------~~~~v 292 (758)
T 3pxi_A 238 RVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSL-------ARGEL 292 (758)
T ss_dssp CEECC-------------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCT-------TSSSC
T ss_pred eEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C----------chhHHHHHHHHH-------hcCCE
Confidence 8888887 556788888899999999998889999999 1 112233333322 25679
Q ss_pred EEEEEeCCCC-----CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCC
Q 011553 332 KVILATNRIE-----SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM 378 (483)
Q Consensus 332 ~vI~ttn~~~-----~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~ 378 (483)
.+|++||..+ .+++++++ ||. .|.|+.|+.+++..||+.+...+
T Consensus 293 ~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~ 341 (758)
T 3pxi_A 293 QCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRY 341 (758)
T ss_dssp EEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTS
T ss_pred EEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999988 79999999 995 79999999999999999776654
No 73
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.65 E-value=6.1e-16 Score=150.23 Aligned_cols=161 Identities=20% Similarity=0.259 Sum_probs=101.4
Q ss_pred CCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHHHhh
Q 011553 188 ESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQK 264 (483)
Q Consensus 188 ~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l~~~ 264 (483)
.+|++++|.+..++.+.+.+... ...+.++||+||||||||++|+++++.+. .+|+.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~-----------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH-----------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 46888999999999988777542 12356799999999999999999999875 58999999876321
Q ss_pred -----hcCCchHH-------HHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccC------Cc
Q 011553 265 -----YLGDGPKL-------VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG------FD 326 (483)
Q Consensus 265 -----~~g~~~~~-------i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~------~~ 326 (483)
..|..... ....|..+ ..++|||||||.+ ..+.+..|+.+++...- ..
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA-----------PMMVQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGS-----------CHHHHHHHHHHHHHCEECCCCC--C
T ss_pred HHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhc-----------CHHHHHHHHHHHHhCCeecCCCccc
Confidence 11211110 01123333 3479999999998 45677888888875310 01
Q ss_pred CCCCeEEEEEeCCC-------CCCChhhcCCCccc-eEEEcCCCCH--HHHHHHHHHHH
Q 011553 327 SRGDVKVILATNRI-------ESLDPALLRPGRID-RKIEFPLPDI--KTRRRIFQIHT 375 (483)
Q Consensus 327 ~~~~v~vI~ttn~~-------~~ld~allr~gR~~-~~i~~~~P~~--~~r~~Il~~~~ 375 (483)
...++.+|+|||.+ ..+.++|.+ ||. ..+.+|+.+. ++...+++.++
T Consensus 138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l 194 (265)
T 2bjv_A 138 LQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFA 194 (265)
T ss_dssp EECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHH
Confidence 12468999999984 247788888 885 3455554433 34444444443
No 74
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=1.1e-14 Score=147.06 Aligned_cols=190 Identities=15% Similarity=0.237 Sum_probs=131.2
Q ss_pred eecccCCCCCcccccccHHHHHHHHHHH-hcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC-------
Q 011553 180 MKVEKAPLESYADIGGLDAQIQEIKEAV-ELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA------- 251 (483)
Q Consensus 180 ~~~~~~~~~~~~di~Gl~~~~~~l~e~i-~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~------- 251 (483)
+|++++++.+|++++|.+.+++.+..++ .. -..+. ++|+||+|||||++++++|+.+..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~------------~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~ 69 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQP------------RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLK 69 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT------------TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC--
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhC------------CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEE
Confidence 5788999999999999999999998877 32 12344 999999999999999999996421
Q ss_pred ----------------------ceEEEechHHHhhhcCCchHHHHHHHHHHh--------------hcCCeEEEEcCCcc
Q 011553 252 ----------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAD--------------DLSPSIVFIDEIDA 295 (483)
Q Consensus 252 ----------------------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~--------------~~~p~Il~iDEiD~ 295 (483)
.++.++++... ......++..+..+. ...|.||+|||++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~ 145 (354)
T 1sxj_E 70 IDVRQFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANS 145 (354)
T ss_dssp ----------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTS
T ss_pred ecceeecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccc
Confidence 12333322210 001112444444332 22567999999998
Q ss_pred ccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHH
Q 011553 296 VGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHT 375 (483)
Q Consensus 296 l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~ 375 (483)
+ +...+..++.++.+. ..++.+|++||.++.+.+++++ |+ ..+.|++|+.++...+++..+
T Consensus 146 L-----------~~~~~~~L~~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 146 L-----------TKDAQAALRRTMEKY-----SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVV 206 (354)
T ss_dssp S-----------CHHHHHHHHHHHHHS-----TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHH
T ss_pred c-----------CHHHHHHHHHHHHhh-----cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHH
Confidence 7 445677777877753 3468899999999999999998 98 689999999999999999877
Q ss_pred cCCCCCc--ccchHHHHhhccccchhhHHHHHHHHH
Q 011553 376 SRMTLAD--DVNLEEFVMTKDEFSGADIKTRRRIFQ 409 (483)
Q Consensus 376 ~~~~~~~--~~~l~~la~~t~g~~~~~i~~~~r~~~ 409 (483)
....+.- +..+..++..+ .++++.+...++
T Consensus 207 ~~~~~~~~~~~~l~~i~~~~----~G~~r~a~~~l~ 238 (354)
T 1sxj_E 207 TNERIQLETKDILKRIAQAS----NGNLRVSLLMLE 238 (354)
T ss_dssp HHHTCEECCSHHHHHHHHHH----TTCHHHHHHHHT
T ss_pred HHcCCCCCcHHHHHHHHHHc----CCCHHHHHHHHH
Confidence 6544331 23355555444 445555544444
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=4.5e-14 Score=142.21 Aligned_cols=222 Identities=21% Similarity=0.296 Sum_probs=146.3
Q ss_pred ceecccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC-----ce
Q 011553 179 VMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA-----TF 253 (483)
Q Consensus 179 ~~~~~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~-----~~ 253 (483)
..|++++++.+|++++|.+.+++.|...+.. | ..+ +++|+||||||||++++++|+.+.. .+
T Consensus 13 ~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~ 79 (340)
T 1sxj_C 13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMV 79 (340)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHE
T ss_pred CchHHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceE
Confidence 4578889999999999999999999988864 1 223 3999999999999999999998643 35
Q ss_pred EEEechHHHhhhcCCchHHHHHHHHHHhh------cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcC
Q 011553 254 LRVVGSELIQKYLGDGPKLVRELFRVADD------LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS 327 (483)
Q Consensus 254 ~~v~~~~l~~~~~g~~~~~i~~~f~~a~~------~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~ 327 (483)
+.+++++. .....++..+..... ..+.|++|||+|.+ ....+..|+.++++.
T Consensus 80 ~~~~~~~~------~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l-----------~~~~~~~L~~~le~~----- 137 (340)
T 1sxj_C 80 LELNASDD------RGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAM-----------TNAAQNALRRVIERY----- 137 (340)
T ss_dssp EEECTTSC------CSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS-----------CHHHHHHHHHHHHHT-----
T ss_pred EEEcCccc------ccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC-----------CHHHHHHHHHHHhcC-----
Confidence 66665432 112333333332221 23679999999998 334567777777653
Q ss_pred CCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCccc-chHHHHhhccccchhhHHHHHH
Q 011553 328 RGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDV-NLEEFVMTKDEFSGADIKTRRR 406 (483)
Q Consensus 328 ~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~-~l~~la~~t~g~~~~~i~~~~r 406 (483)
...+.+|++||.+..+.+++++ |+. .+.|++++.++...++...+....+.-+. .+..++ .++.++++.+..
T Consensus 138 ~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~----~~s~G~~r~~~~ 210 (340)
T 1sxj_C 138 TKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALI----ELSNGDMRRVLN 210 (340)
T ss_dssp TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHH----HHHTTCHHHHHH
T ss_pred CCCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHcCCCHHHHHH
Confidence 3567889999999999999999 986 89999999999999888777443322111 122333 345667777666
Q ss_pred HHHHhhccccc--cccCCHHHHHhcCCCCCHHHHHHHH
Q 011553 407 IFQIHTSRMTL--ADDVNLEEFVMTKDEFSGADIKAIC 442 (483)
Q Consensus 407 ~~~~~~~~~~~--~~~~~l~~la~~~~g~s~~di~~l~ 442 (483)
.++.......- .+.++.+.+...........+..++
T Consensus 211 ~l~~~~~~~~~~~~~~it~~~v~~~~~~~~~~~i~~l~ 248 (340)
T 1sxj_C 211 VLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVL 248 (340)
T ss_dssp HTTTTTTTTCSSSCCCBCHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHhcCCcccccccHHHHHHHhCCCCHHHHHHHH
Confidence 66543321110 0124455554444333344444443
No 76
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.61 E-value=6.2e-16 Score=153.68 Aligned_cols=158 Identities=21% Similarity=0.296 Sum_probs=104.0
Q ss_pred ccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhh---
Q 011553 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQK--- 264 (483)
Q Consensus 191 ~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~--- 264 (483)
++|+|.+..++.+.+.+... ...+.+|||+||||||||++|++|++.+ +.+|+.++|+.+...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 35789999999988887652 2345679999999999999999999976 468999998765331
Q ss_pred --hcCCc----hH---HHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCC------cCCC
Q 011553 265 --YLGDG----PK---LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF------DSRG 329 (483)
Q Consensus 265 --~~g~~----~~---~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~------~~~~ 329 (483)
..|.. .. .....|..+. .++||||||+.+ ..+.+..|+.+++...-. ....
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDI-----------SPLMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTC-----------CHHHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred HHhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccC-----------CHHHHHHHHHHHhcCEeeecCCcccccC
Confidence 11211 00 1123455443 379999999998 456788888888753210 1124
Q ss_pred CeEEEEEeCCC-------CCCChhhcCCCccc-eEEEcCCCC--HHHHHHHHHHHH
Q 011553 330 DVKVILATNRI-------ESLDPALLRPGRID-RKIEFPLPD--IKTRRRIFQIHT 375 (483)
Q Consensus 330 ~v~vI~ttn~~-------~~ld~allr~gR~~-~~i~~~~P~--~~~r~~Il~~~~ 375 (483)
++.||+|||.. ..+.+.|.. ||. ..|.+|+.. .++...++..++
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l 190 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFL 190 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHH
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHH
Confidence 68999999975 235667777 775 234454443 233444555444
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.60 E-value=2e-15 Score=170.07 Aligned_cols=167 Identities=25% Similarity=0.396 Sum_probs=119.8
Q ss_pred cccccccHHHHHHHHHHHhcCCCChhhhhhhCC----CCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHH
Q 011553 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGI----KPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELI 262 (483)
Q Consensus 190 ~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~----~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~ 262 (483)
+.+|+|.+.+++.+...+... ..|. .+..++||+||||||||++|+++|+.+ +.+|+.++|+++.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~--------~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRA--------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHH--------GGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred hcccCCcHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 467899999999998888652 1121 122469999999999999999999998 6799999998765
Q ss_pred hh-----hcCCchHH-----HHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcC-----
Q 011553 263 QK-----YLGDGPKL-----VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDS----- 327 (483)
Q Consensus 263 ~~-----~~g~~~~~-----i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~----- 327 (483)
.. ..|..+.. ...+........++||||||||.+ +.+.+..|+++++.-.-...
T Consensus 629 ~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~g~~v 697 (854)
T 1qvr_A 629 EKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA-----------HPDVFNILLQILDDGRLTDSHGRTV 697 (854)
T ss_dssp SSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGS-----------CHHHHHHHHHHHTTTEECCSSSCCE
T ss_pred chhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc-----------CHHHHHHHHHHhccCceECCCCCEe
Confidence 42 12211111 122334444455689999999988 56788888888874321111
Q ss_pred -CCCeEEEEEeCCC--------------------------CCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHcC
Q 011553 328 -RGDVKVILATNRI--------------------------ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR 377 (483)
Q Consensus 328 -~~~v~vI~ttn~~--------------------------~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~ 377 (483)
-.+++||+|||.. ..+.|+|++ ||+.++.|++|+.++...|+..++..
T Consensus 698 d~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~ 772 (854)
T 1qvr_A 698 DFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSY 772 (854)
T ss_dssp ECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHH
Confidence 1368899999972 346788888 99989999999999999999887753
No 78
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.56 E-value=1.7e-15 Score=133.52 Aligned_cols=131 Identities=23% Similarity=0.322 Sum_probs=94.6
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchH
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPK 271 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~ 271 (483)
+++|.+.+++++.+.+... ...+.+|||+||||||||++|+++++... +|+.++|+.+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-----------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 4679999999998887642 13356799999999999999999999888 99999999876543
Q ss_pred HHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCC-CC----CChh
Q 011553 272 LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI-ES----LDPA 346 (483)
Q Consensus 272 ~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~-~~----ld~a 346 (483)
...+|..+. .++|||||+|.+ ..+.+..++++++... ..++.+|+|||.+ +. +.+.
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l-----------~~~~q~~Ll~~l~~~~----~~~~~iI~~tn~~~~~~~~~~~~~ 127 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQY-----------SRNIQTGITFIIGKAE----RCRVRVIASCSYAAGSDGISCEEK 127 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTC-----------CHHHHHHHHHHHHHHT----TTTCEEEEEEEECTTTC--CHHHH
T ss_pred -hhhHHHhCC---CCeEEEeChHHC-----------CHHHHHHHHHHHHhCC----CCCEEEEEecCCCHHHHHhCccHH
Confidence 455666554 479999999998 4567788888887642 4568899999864 33 2334
Q ss_pred hcCCCccc-eEEEcCC
Q 011553 347 LLRPGRID-RKIEFPL 361 (483)
Q Consensus 347 llr~gR~~-~~i~~~~ 361 (483)
|.. |+. ..|.+|+
T Consensus 128 L~~--rl~~~~i~lPp 141 (143)
T 3co5_A 128 LAG--LFSESVVRIPP 141 (143)
T ss_dssp HHH--HSSSEEEEECC
T ss_pred HHH--HhcCcEEeCCC
Confidence 444 443 3556654
No 79
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.55 E-value=3.6e-15 Score=131.66 Aligned_cols=131 Identities=16% Similarity=0.212 Sum_probs=93.2
Q ss_pred cccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhhhcCC
Q 011553 192 DIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGD 268 (483)
Q Consensus 192 di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~~~g~ 268 (483)
+++|.+..++++.+.+... ...+.+|||+||||||||++|+++++.. +.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 5789999999988877642 2345679999999999999999999987 67899 999876543
Q ss_pred chHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCC-------C
Q 011553 269 GPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI-------E 341 (483)
Q Consensus 269 ~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~-------~ 341 (483)
......|..+. .++|||||||.+ ..+.+..|+.++.. ...++.+|+|||.+ .
T Consensus 66 --~~~~~~~~~a~---~g~l~ldei~~l-----------~~~~q~~Ll~~l~~-----~~~~~~~I~~t~~~~~~~~~~~ 124 (145)
T 3n70_A 66 --PQLNDFIALAQ---GGTLVLSHPEHL-----------TREQQYHLVQLQSQ-----EHRPFRLIGIGDTSLVELAASN 124 (145)
T ss_dssp --SCHHHHHHHHT---TSCEEEECGGGS-----------CHHHHHHHHHHHHS-----SSCSSCEEEEESSCHHHHHHHS
T ss_pred --hhhhcHHHHcC---CcEEEEcChHHC-----------CHHHHHHHHHHHhh-----cCCCEEEEEECCcCHHHHHHcC
Confidence 22344565554 379999999998 45677888887732 23468899999974 2
Q ss_pred CCChhhcCCCccc-eEEEcCC
Q 011553 342 SLDPALLRPGRID-RKIEFPL 361 (483)
Q Consensus 342 ~ld~allr~gR~~-~~i~~~~ 361 (483)
.+.+.|.. |+. ..|.+|+
T Consensus 125 ~~~~~L~~--rl~~~~i~lPp 143 (145)
T 3n70_A 125 HIIAELYY--CFAMTQIACLP 143 (145)
T ss_dssp CCCHHHHH--HHHHHEEECCC
T ss_pred CCCHHHHH--HhcCCEEeCCC
Confidence 34555555 543 2455554
No 80
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.53 E-value=2.8e-14 Score=154.71 Aligned_cols=230 Identities=22% Similarity=0.316 Sum_probs=141.9
Q ss_pred ccCCCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCce---EEEech
Q 011553 183 EKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATF---LRVVGS 259 (483)
Q Consensus 183 ~~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~---~~v~~~ 259 (483)
.+.++.+|++++|.+.+++.+...+.. ..+++|+||||||||+||++||..+.... +.+.+.
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred ccccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence 356778999999999999999888764 34799999999999999999999875321 111110
Q ss_pred HHH--------------h------------------------------------------hhcCCchHHHHHHHHH----
Q 011553 260 ELI--------------Q------------------------------------------KYLGDGPKLVRELFRV---- 279 (483)
Q Consensus 260 ~l~--------------~------------------------------------------~~~g~~~~~i~~~f~~---- 279 (483)
... . .++.........+|..
T Consensus 98 ~~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~ 177 (604)
T 3k1j_A 98 PEDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD 177 (604)
T ss_dssp TTCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC
T ss_pred cccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec
Confidence 000 0 0000000001111210
Q ss_pred -------------------HhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc----CC-----------
Q 011553 280 -------------------ADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD----GF----------- 325 (483)
Q Consensus 280 -------------------a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~----~~----------- 325 (483)
.....+++|||||++.+ +...+..|+.+|+.-. +.
T Consensus 178 ~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l-----------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~ 246 (604)
T 3k1j_A 178 PFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATL-----------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRT 246 (604)
T ss_dssp CC----CCCCGGGGEECCHHHHTTTSEEEETTGGGS-----------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBC
T ss_pred hhhcCCccccccccccCceeeecCCCEEEEechhhC-----------CHHHHHHHHHHHHcCcEEecccccccccccCCC
Confidence 11124579999999998 5678888998887422 10
Q ss_pred -cCCCCeEEEEEeCCC--CCCChhhcCCCccc---eEEEcCCC---CHHHHHHHHHHHHcCCCCCcccchHHHHhhcccc
Q 011553 326 -DSRGDVKVILATNRI--ESLDPALLRPGRID---RKIEFPLP---DIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEF 396 (483)
Q Consensus 326 -~~~~~v~vI~ttn~~--~~ld~allr~gR~~---~~i~~~~P---~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~ 396 (483)
....++.||+|||+. +.++++|++ ||. ..+.|+.. +.+....+++.......... ....+
T Consensus 247 ~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~~l 315 (604)
T 3k1j_A 247 EPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDG---------KIPHF 315 (604)
T ss_dssp SCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHC---------SSCCB
T ss_pred CccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhcc---------CcccC
Confidence 112478999999986 679999999 996 45666532 33445555543322111000 00112
Q ss_pred chhhHHHHHHHHHHhhccccccccCCHHHHHhcCCC------CCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 011553 397 SGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE------FSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEK 468 (483)
Q Consensus 397 ~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g------~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~ 468 (483)
+...+..+.+.+. ...| .+.+++.++++.|...|..+++..|+.+|+.+|+..
T Consensus 316 s~eAl~~Li~~~~-------------------r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 316 TKEAVEEIVREAQ-------------------KRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp BHHHHHHHHHHHH-------------------HTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh-------------------hhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 2222222222111 1122 368999999999999998888999999999999864
No 81
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.43 E-value=2e-12 Score=132.68 Aligned_cols=232 Identities=15% Similarity=0.105 Sum_probs=139.5
Q ss_pred cccccccHHHHHHHHHHH-hcCCCChhhhhhhCCCCCCceEE--EcCCCCchHHHHHHHHHHc---------CCceEEEe
Q 011553 190 YADIGGLDAQIQEIKEAV-ELPLTHPELYEDIGIKPPKGVIL--YGEPGTGKTLLAKAVANST---------SATFLRVV 257 (483)
Q Consensus 190 ~~di~Gl~~~~~~l~e~i-~~pl~~~~~~~~~g~~~~~gvLL--~GppGtGKT~Laraia~~l---------~~~~~~v~ 257 (483)
..+++|.++.++.|.+.+ ......+ ...+..++| +||||+|||+|++++++.+ +..++.++
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 367899999999998887 4311100 023456899 9999999999999999876 45677888
Q ss_pred chH------HHhh---hc-------CCch-HHHHHHHHHHh-hcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHH
Q 011553 258 GSE------LIQK---YL-------GDGP-KLVRELFRVAD-DLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELL 319 (483)
Q Consensus 258 ~~~------l~~~---~~-------g~~~-~~i~~~f~~a~-~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL 319 (483)
|.. +... .. +... .....+..... ...|.||+|||++.+.... ....+....+..++
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~-----~~~~~~l~~l~~~~ 168 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSP-----RIAAEDLYTLLRVH 168 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCT-----TSCHHHHHHHHTHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhcc-----CcchHHHHHHHHHH
Confidence 643 1111 11 1111 22233332222 2457899999999984321 01223444444555
Q ss_pred HhccCCcCCCCeEEEEEeCCCC---CCC---hhhcCCCccceEEEcCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhc
Q 011553 320 NQLDGFDSRGDVKVILATNRIE---SLD---PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTK 393 (483)
Q Consensus 320 ~~l~~~~~~~~v~vI~ttn~~~---~ld---~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t 393 (483)
..+..-....++.+|++|+.++ .++ +.+.+ ++...+.+++++.++..+++..++.........
T Consensus 169 ~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~--------- 237 (412)
T 1w5s_A 169 EEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVW--------- 237 (412)
T ss_dssp HHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSC---------
T ss_pred HhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCC---------
Confidence 4432000025788999987654 233 55666 665569999999999999998765421110000
Q ss_pred cccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 011553 394 DEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKD------EFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKE 467 (483)
Q Consensus 394 ~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~------g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~ 467 (483)
+ ......++..+. | .++.+..+|..|...|..++...++.+++..++.
T Consensus 238 ---~----------------------~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~ 291 (412)
T 1w5s_A 238 ---E----------------------PRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS 291 (412)
T ss_dssp ---C----------------------HHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred ---C----------------------hHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 0 111233444444 4 3566777888887777766777888888887776
Q ss_pred HHH
Q 011553 468 KVM 470 (483)
Q Consensus 468 ~~~ 470 (483)
...
T Consensus 292 ~~~ 294 (412)
T 1w5s_A 292 ENE 294 (412)
T ss_dssp HC-
T ss_pred HHh
Confidence 543
No 82
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.42 E-value=6.1e-12 Score=126.38 Aligned_cols=147 Identities=14% Similarity=0.176 Sum_probs=106.7
Q ss_pred ccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCc----------------------
Q 011553 195 GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSAT---------------------- 252 (483)
Q Consensus 195 Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~---------------------- 252 (483)
-++++.+.+...+.. -..++++||+||||+|||++|+++|+.+...
T Consensus 6 w~~~~~~~l~~~i~~------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~ 73 (334)
T 1a5t_A 6 WLRPDFEKLVASYQA------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH 73 (334)
T ss_dssp GGHHHHHHHHHHHHT------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHc------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 467777888887764 2456679999999999999999999987642
Q ss_pred --eEEEechHHHhhhcCCchHHHHHHHHHHhhc----CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCc
Q 011553 253 --FLRVVGSELIQKYLGDGPKLVRELFRVADDL----SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD 326 (483)
Q Consensus 253 --~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~----~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~ 326 (483)
++.+++.+ .........++.+++.+... ...|++|||+|.+ +.+.+..|+..+++
T Consensus 74 ~d~~~~~~~~---~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l-----------~~~a~naLLk~lEe----- 134 (334)
T 1a5t_A 74 PDYYTLAPEK---GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL-----------TDAAANALLKTLEE----- 134 (334)
T ss_dssp TTEEEECCCT---TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGB-----------CHHHHHHHHHHHTS-----
T ss_pred CCEEEEeccc---cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhc-----------CHHHHHHHHHHhcC-----
Confidence 23332210 00011234567777776532 3579999999999 33445555555542
Q ss_pred CCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHH
Q 011553 327 SRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHT 375 (483)
Q Consensus 327 ~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~ 375 (483)
+..++++|++||.++.+.+++++ |+. .+.|++|+.++...++....
T Consensus 135 p~~~~~~Il~t~~~~~l~~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 135 PPAETWFFLATREPERLLATLRS--RCR-LHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp CCTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHC
T ss_pred CCCCeEEEEEeCChHhCcHHHhh--cce-eeeCCCCCHHHHHHHHHHhc
Confidence 35679999999999999999999 985 89999999999999888765
No 83
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.38 E-value=1.2e-13 Score=162.00 Aligned_cols=154 Identities=19% Similarity=0.190 Sum_probs=108.6
Q ss_pred CCCCCcccccccHHHHHHHHHHHhcCCCC----------hhhhhh------hCCC----------CCCc--eEEEcCCCC
Q 011553 185 APLESYADIGGLDAQIQEIKEAVELPLTH----------PELYED------IGIK----------PPKG--VILYGEPGT 236 (483)
Q Consensus 185 ~~~~~~~di~Gl~~~~~~l~e~i~~pl~~----------~~~~~~------~g~~----------~~~g--vLL~GppGt 236 (483)
.+.++|.||+|++++++.+.+.+.+|+.+ ++.|.. .|+. +|+| +||||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 44579999999999999999999998844 556665 3333 4566 999999999
Q ss_pred chHHHHHHHHHHc---CCceEEEechH----HH--------hhhcCC----chHHHHHHHHHHhhcCCeEEEEcCCcccc
Q 011553 237 GKTLLAKAVANST---SATFLRVVGSE----LI--------QKYLGD----GPKLVRELFRVADDLSPSIVFIDEIDAVG 297 (483)
Q Consensus 237 GKT~Laraia~~l---~~~~~~v~~~~----l~--------~~~~g~----~~~~i~~~f~~a~~~~p~Il~iDEiD~l~ 297 (483)
|||+||++++.+. +.+.+.++..+ +. ++|+++ +++.++.+|..|+...|++||+|++|+|+
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999876 34555555444 33 456666 78899999999999999999999999999
Q ss_pred ccccC---CCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC
Q 011553 298 TKRYD---AHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (483)
Q Consensus 298 ~~r~~---~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~ 339 (483)
+.+.. .......-..+.+.++|.++++.....+|+|| +||+
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1217 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eecc
Confidence 88431 11111133456688999999887667788888 6676
No 84
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.38 E-value=1.7e-12 Score=102.15 Aligned_cols=77 Identities=44% Similarity=0.705 Sum_probs=70.8
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHH
Q 011553 360 PLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIK 439 (483)
Q Consensus 360 ~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~ 439 (483)
|+|+.++|.+||+.++.++++.. ++++..++..++||||+||.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~-------------------------------------~~dl~~la~~t~G~SGADi~ 43 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTR-------------------------------------GINLRKIAELMPGASGAEVK 43 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECT-------------------------------------TCCHHHHHHTCTTCCHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCC-------------------------------------ccCHHHHHHHcCCCCHHHHH
Confidence 68999999999999999887765 78899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhc
Q 011553 440 AICTEAGLLALRERRMKVTHTDFKKAKEKVMFKK 473 (483)
Q Consensus 440 ~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~ 473 (483)
++|++|++.|++++...|+.+||..|+++++.++
T Consensus 44 ~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~~ 77 (78)
T 3kw6_A 44 GVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 77 (78)
T ss_dssp HHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998754
No 85
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.36 E-value=4.6e-12 Score=125.65 Aligned_cols=142 Identities=14% Similarity=0.190 Sum_probs=107.1
Q ss_pred ccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc------CCceEEEechHHHhhhcCC
Q 011553 195 GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST------SATFLRVVGSELIQKYLGD 268 (483)
Q Consensus 195 Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l------~~~~~~v~~~~l~~~~~g~ 268 (483)
|.+++++.|...+... . ..++|||||||+|||++|+++|+.+ ...|+.++++. ...
T Consensus 1 g~~~~~~~L~~~i~~~------------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENI 62 (305)
T ss_dssp ---CHHHHHHHHHHTC------------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCB
T ss_pred ChHHHHHHHHHHHHCC------------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCC
Confidence 5677888888888752 2 4569999999999999999999863 45677776542 012
Q ss_pred chHHHHHHHHHHhhcC----CeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCC
Q 011553 269 GPKLVRELFRVADDLS----PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 344 (483)
Q Consensus 269 ~~~~i~~~f~~a~~~~----p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld 344 (483)
....++.+++.+.... ..|+||||+|.+ +.+.+..|+..|++ +..++++|++|+.++.+.
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~l-----------t~~a~naLLk~LEe-----p~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERM-----------TQQAANAFLKALEE-----PPEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB-----------CHHHHHHTHHHHHS-----CCTTEEEEEEESCGGGSC
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHh-----------CHHHHHHHHHHHhC-----CCCCeEEEEEECChHhCh
Confidence 3345777887775432 369999999999 44556666666653 356889999999999999
Q ss_pred hhhcCCCccceEEEcCCCCHHHHHHHHHHHH
Q 011553 345 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHT 375 (483)
Q Consensus 345 ~allr~gR~~~~i~~~~P~~~~r~~Il~~~~ 375 (483)
+++++ | ++.|++|+.++...++...+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 8 79999999999999888776
No 86
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.32 E-value=7.6e-12 Score=128.99 Aligned_cols=245 Identities=15% Similarity=0.114 Sum_probs=134.6
Q ss_pred ccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHH-HHHcCCceEEEec-----hHHHhhhc
Q 011553 193 IGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAV-ANSTSATFLRVVG-----SELIQKYL 266 (483)
Q Consensus 193 i~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Larai-a~~l~~~~~~v~~-----~~l~~~~~ 266 (483)
|.|++.++..|.-.+...-.. +...-+|||.|+||| ||+||+++ ++.+....+. .+ ..+.....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft-~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYV-DLRRTELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEE-EGGGCCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEe-cCCCCCccCceEEEE
Confidence 777777766665555431100 112336999999999 99999999 7665543322 21 11111100
Q ss_pred CC-chHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhc----cCCcCCCCeEEEEEeCCCC
Q 011553 267 GD-GPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQL----DGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 267 g~-~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l----~~~~~~~~v~vI~ttn~~~ 341 (483)
+. +...-...+..|.. +|+|||||+.+ ....+..|++.|++- .+..-..++.||+|+|...
T Consensus 285 ~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~-----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~ 350 (506)
T 3f8t_A 285 EDRGWALRAGAAVLADG---GILAVDHLEGA-----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGE 350 (506)
T ss_dssp ESSSEEEEECHHHHTTT---SEEEEECCTTC-----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC
T ss_pred cCCCcccCCCeeEEcCC---CeeehHhhhhC-----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCccc
Confidence 00 00000112333332 69999999988 667889999999852 2221235799999999864
Q ss_pred -----------CCChhhcCCCccceEEE-cCCCCHHHHHHHHHHHHcCCCCCcccchHH---HHh-h--ccccchhhHHH
Q 011553 342 -----------SLDPALLRPGRIDRKIE-FPLPDIKTRRRIFQIHTSRMTLADDVNLEE---FVM-T--KDEFSGADIKT 403 (483)
Q Consensus 342 -----------~ld~allr~gR~~~~i~-~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~---la~-~--t~g~~~~~i~~ 403 (483)
.|++++++ ||+..+. +..|+.+...+ .....-....+.. ++. . ..-++. ++..
T Consensus 351 ~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e------~~~~~ls~e~L~~yi~~ar~~~~~p~ls~-ea~~ 421 (506)
T 3f8t_A 351 QWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEE------QDTEVPSYTLLRRYLLYAIREHPAPELTE-EARK 421 (506)
T ss_dssp --CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------------CCHHHHHHHHHHHHHHCSCCEECH-HHHH
T ss_pred ccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhc------ccCCCCCHHHHHHHHHHHHhcCCCceeCH-HHHH
Confidence 78899999 9986554 45565544321 0000000011111 111 0 011111 2222
Q ss_pred H-HHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhhccC
Q 011553 404 R-RRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKE 475 (483)
Q Consensus 404 ~-~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~~~ 475 (483)
+ .+.+.. .+.-. ..+ .......-+.|++.+.+|++-|...|..+.+..|+.+|+.+|++-+....++
T Consensus 422 yI~~~y~~-tR~~~---~~~-~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~~ 489 (506)
T 3f8t_A 422 RLEHWYET-RREEV---EER-LGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLET 489 (506)
T ss_dssp HHHHHHHH-HHHHH---HHH-HHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhcCc---ccc-cccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHH
Confidence 2 222111 11100 000 0001135588999999999999999999999999999999999988765443
No 87
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.31 E-value=4.4e-12 Score=101.52 Aligned_cols=77 Identities=43% Similarity=0.673 Sum_probs=71.2
Q ss_pred cCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHH
Q 011553 359 FPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADI 438 (483)
Q Consensus 359 ~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di 438 (483)
-.+||.++|.+||+.+++++++.. +++++.|+..++||||+||
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~-------------------------------------dvdl~~LA~~T~G~SGADL 50 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTR-------------------------------------GINLRKIAELMPGASGAEV 50 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECT-------------------------------------TCCCHHHHHTCSSCCHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCc-------------------------------------ccCHHHHHHHcCCCCHHHH
Confidence 468999999999999999988765 7889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhh
Q 011553 439 KAICTEAGLLALRERRMKVTHTDFKKAKEKVMFK 472 (483)
Q Consensus 439 ~~l~~~A~~~A~~~~~~~it~ed~~~Al~~~~~~ 472 (483)
.++|++|++.|+++....|+.+||..|++++..+
T Consensus 51 ~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 51 KGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 9999999999999989999999999999998754
No 88
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.29 E-value=1.3e-11 Score=126.64 Aligned_cols=213 Identities=18% Similarity=0.269 Sum_probs=130.3
Q ss_pred cccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHHHhh--
Q 011553 190 YADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQK-- 264 (483)
Q Consensus 190 ~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l~~~-- 264 (483)
+..++|.+..++++.+.+... ......|+|+|++|||||++|++++.... .+|+.++|+.+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKI-----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHH-----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH
T ss_pred chhhhhccHHhhHHHHHHHHh-----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH
Confidence 456778887888777766541 23345699999999999999999998765 59999999865331
Q ss_pred -----------hcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhcc-----CCc-C
Q 011553 265 -----------YLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLD-----GFD-S 327 (483)
Q Consensus 265 -----------~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~-----~~~-~ 327 (483)
|.|.... ....|..|.. ++||||||+.+ +.+.|..|+++|+.-. +.. .
T Consensus 205 ~~elfg~~~g~~tga~~~-~~g~~~~a~~---gtlfldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~ 269 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSS-KEGFFELADG---GTLFLDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRKEI 269 (387)
T ss_dssp HHHHHCBCTTSSTTCCSC-BCCHHHHTTT---SEEEEESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCSBE
T ss_pred HHHhcCCCCCCCCCcccc-cCCceeeCCC---cEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCcee
Confidence 1111111 1234555544 79999999999 6788999999998522 111 1
Q ss_pred CCCeEEEEEeCCC-------CCCChhhcCCCccceEEEcCCCCHHHHH----HHHHHHHcC----CCCCcccchHHHHhh
Q 011553 328 RGDVKVILATNRI-------ESLDPALLRPGRIDRKIEFPLPDIKTRR----RIFQIHTSR----MTLADDVNLEEFVMT 392 (483)
Q Consensus 328 ~~~v~vI~ttn~~-------~~ld~allr~gR~~~~i~~~~P~~~~r~----~Il~~~~~~----~~~~~~~~l~~la~~ 392 (483)
..++.+|+|||.. ..+.+.|.. |+. .+.+..|...+|. .++..++.. .....
T Consensus 270 ~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~-~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~---------- 336 (387)
T 1ny5_A 270 EVNVRILAATNRNIKELVKEGKFREDLYY--RLG-VIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEV---------- 336 (387)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHT-TEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCC----------
T ss_pred eccEEEEEeCCCCHHHHHHcCCccHHHHH--hhc-CCeecCCcchhccccHHHHHHHHHHHHHHHcCCCC----------
Confidence 2378999999963 234444444 553 3445555555543 344444332 11110
Q ss_pred ccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 011553 393 KDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKE 467 (483)
Q Consensus 393 t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~it~ed~~~Al~ 467 (483)
.+++.. .+..+....---+-+++++++++|...+ ....|+.+|+...++
T Consensus 337 -~~~~~~----------------------a~~~l~~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~~ 385 (387)
T 1ny5_A 337 -EGFTKS----------------------AQELLLSYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCLVN 385 (387)
T ss_dssp -CEECHH----------------------HHHHHHHSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHHC-
T ss_pred -CCCCHH----------------------HHHHHHhCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHhhh
Confidence 111111 1222332211113479999999988665 456899999876543
No 89
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.23 E-value=2.7e-11 Score=97.42 Aligned_cols=75 Identities=36% Similarity=0.598 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHH
Q 011553 363 DIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAIC 442 (483)
Q Consensus 363 ~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~ 442 (483)
|.++|.+||+.|+.++++.. ++++..|+..|+||||+||.++|
T Consensus 2 d~~~R~~Il~~~~~~~~~~~-------------------------------------dvdl~~lA~~t~G~SGADl~~l~ 44 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVER-------------------------------------GIRWELISRLCPNSTGAELRSVC 44 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCS-------------------------------------CCCHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCC-------------------------------------ccCHHHHHHHcCCCcHHHHHHHH
Confidence 56789999999999988776 88899999999999999999999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhhcc
Q 011553 443 TEAGLLALRERRMKVTHTDFKKAKEKVMFKKK 474 (483)
Q Consensus 443 ~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~~ 474 (483)
++|++.|+++....|+.+||..|++++.....
T Consensus 45 ~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~ 76 (88)
T 3vlf_B 45 TEAGMFAIRARRKVATEKDFLKAVDKVISGYK 76 (88)
T ss_dssp HHHHHHHHHHSCSSBCHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999987543
No 90
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.20 E-value=2.3e-10 Score=139.75 Aligned_cols=139 Identities=20% Similarity=0.351 Sum_probs=97.3
Q ss_pred CCceEEEcCCCCchHHHHHHHHH-HcCCceEEEechHHHhhhcCCchHHHHHHHHHHh---------------hcCCeEE
Q 011553 225 PKGVILYGEPGTGKTLLAKAVAN-STSATFLRVVGSELIQKYLGDGPKLVRELFRVAD---------------DLSPSIV 288 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~-~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~---------------~~~p~Il 288 (483)
.+++||+||||||||++|+.+.. ..+..++.++++... +...+...+.... ...++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~t------s~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDT------TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTC------CHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCC------CHHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 57899999999999999955544 446677888776542 2233444443321 1234699
Q ss_pred EEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCC--------CCeEEEEEeCCCC-----CCChhhcCCCccce
Q 011553 289 FIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSR--------GDVKVILATNRIE-----SLDPALLRPGRIDR 355 (483)
Q Consensus 289 ~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~--------~~v~vI~ttn~~~-----~ld~allr~gR~~~ 355 (483)
||||++.....++ +.......|.++++. .++... .++.+|+|||.+. .++++++| || .
T Consensus 1341 FiDEinmp~~d~y-----g~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~ 1411 (2695)
T 4akg_A 1341 FCDEINLPKLDKY-----GSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-A 1411 (2695)
T ss_dssp EEETTTCSCCCSS-----SCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-E
T ss_pred Eeccccccccccc-----CchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-e
Confidence 9999986533322 233456667777643 232221 2689999999984 79999999 99 6
Q ss_pred EEEcCCCCHHHHHHHHHHHHcCC
Q 011553 356 KIEFPLPDIKTRRRIFQIHTSRM 378 (483)
Q Consensus 356 ~i~~~~P~~~~r~~Il~~~~~~~ 378 (483)
++.++.|+.+++..|+..++...
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999887643
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.18 E-value=2e-10 Score=104.42 Aligned_cols=132 Identities=15% Similarity=0.086 Sum_probs=81.6
Q ss_pred CCCCCcccccc----cHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc----CCceEEE
Q 011553 185 APLESYADIGG----LDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST----SATFLRV 256 (483)
Q Consensus 185 ~~~~~~~di~G----l~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l----~~~~~~v 256 (483)
....+|+++.+ +..+++.+.+++... ....+.+++|+||||||||+|++++++.+ +..++.+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVHNF----------NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHHSC----------CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHHhc----------cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 34557777664 455666666666542 22345679999999999999999999876 5567778
Q ss_pred echHHHhhhcCCchH-HHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEE
Q 011553 257 VGSELIQKYLGDGPK-LVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL 335 (483)
Q Consensus 257 ~~~~l~~~~~g~~~~-~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ 335 (483)
++.++...+...... ....++.. ...|.+|+|||++... .+...+..+.++++... ..+..+|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~~---------~~~~~~~~l~~ll~~~~----~~~~~ii~ 138 (180)
T 3ec2_A 74 DTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSER---------LSDWQRELISYIITYRY----NNLKSTII 138 (180)
T ss_dssp EHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSSC---------CCHHHHHHHHHHHHHHH----HTTCEEEE
T ss_pred EHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCCc---------CCHHHHHHHHHHHHHHH----HcCCCEEE
Confidence 887776533210000 00011111 1257899999997542 13445566777776542 13467888
Q ss_pred EeCCCC
Q 011553 336 ATNRIE 341 (483)
Q Consensus 336 ttn~~~ 341 (483)
|||.+.
T Consensus 139 tsn~~~ 144 (180)
T 3ec2_A 139 TTNYSL 144 (180)
T ss_dssp ECCCCS
T ss_pred EcCCCh
Confidence 888753
No 92
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.05 E-value=3.3e-10 Score=89.99 Aligned_cols=75 Identities=45% Similarity=0.748 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHH
Q 011553 363 DIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAIC 442 (483)
Q Consensus 363 ~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~ 442 (483)
|.++|.+||+.+++++++.. ++++..++..++||||+||.++|
T Consensus 2 d~~~R~~Il~~~l~~~~~~~-------------------------------------~vdl~~la~~t~G~SGADi~~l~ 44 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSE-------------------------------------EVDLEDYVARPDKISGADINSIC 44 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCT-------------------------------------TCCTHHHHTSSCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCc-------------------------------------ccCHHHHHHHcCCCCHHHHHHHH
Confidence 67899999999999988766 78899999999999999999999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhhcc
Q 011553 443 TEAGLLALRERRMKVTHTDFKKAKEKVMFKKK 474 (483)
Q Consensus 443 ~~A~~~A~~~~~~~it~ed~~~Al~~~~~~~~ 474 (483)
++|++.|+++....|+.+||..|++++.....
T Consensus 45 ~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 45 QESGMLAVRENRYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp HHHHHGGGTSCCSSBCHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHhccCCcCHHHHHHHHHHHccCch
Confidence 99999999988899999999999999876554
No 93
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.03 E-value=2.2e-10 Score=116.56 Aligned_cols=157 Identities=23% Similarity=0.358 Sum_probs=99.2
Q ss_pred ccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCC--ceEEEechHHHhh----
Q 011553 191 ADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSELIQK---- 264 (483)
Q Consensus 191 ~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~~~~l~~~---- 264 (483)
.+++|.+..+.++.+.+... ......++++|++||||+++|++++...+. .|+.++|+.+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~-----------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~ 197 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI-----------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAES 197 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH-----------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHH
T ss_pred ccccccchHHHHHHhhhhhh-----------hccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHH
Confidence 45778888877777665431 123445999999999999999999998765 3999999864321
Q ss_pred ---------hcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccC--CcC----CC
Q 011553 265 ---------YLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG--FDS----RG 329 (483)
Q Consensus 265 ---------~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~--~~~----~~ 329 (483)
|.|.... ....|+.|.. ++||||||+.+ +...|..|+.+|+.-.- ... .-
T Consensus 198 ~lfg~~~g~~tga~~~-~~g~~~~a~~---gtlfldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 262 (368)
T 3dzd_A 198 ELFGHEKGAFTGALTR-KKGKLELADQ---GTLFLDEVGEL-----------DQRVQAKLLRVLETGSFTRLGGNQKIEV 262 (368)
T ss_dssp HHHEECSCSSSSCCCC-EECHHHHTTT---SEEEEETGGGS-----------CHHHHHHHHHHHHHSEECCBTCCCBEEC
T ss_pred HhcCccccccCCcccc-cCChHhhcCC---CeEEecChhhC-----------CHHHHHHHHHHHHhCCcccCCCCcceee
Confidence 1111110 1234555544 69999999999 67889999999975321 111 13
Q ss_pred CeEEEEEeCCC-------CCCChhhcCCCccce-EEEcCCCCH--HHHHHHHHHHH
Q 011553 330 DVKVILATNRI-------ESLDPALLRPGRIDR-KIEFPLPDI--KTRRRIFQIHT 375 (483)
Q Consensus 330 ~v~vI~ttn~~-------~~ld~allr~gR~~~-~i~~~~P~~--~~r~~Il~~~~ 375 (483)
++.+|+|||.. ..+.+.|.. |+.. .|.+|+... ++...++..++
T Consensus 263 ~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l 316 (368)
T 3dzd_A 263 DIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFL 316 (368)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHH
T ss_pred eeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHH
Confidence 68999999862 223445554 5542 344544433 33344555444
No 94
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.03 E-value=8e-11 Score=93.37 Aligned_cols=81 Identities=32% Similarity=0.467 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHHHHHHHhhccccccccCCHHHHHhcCCCCCHHHHHHHHHH
Q 011553 365 KTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTE 444 (483)
Q Consensus 365 ~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~r~~~~~~~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~ 444 (483)
++|.+||+.|++++++.. ++++..++..+.||||+||.++|++
T Consensus 1 ~~R~~Il~~~l~~~~~~~-------------------------------------~vdl~~lA~~t~G~SGADi~~l~~e 43 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAP-------------------------------------EADLDSLIIRNDSLSGAVIAAIMQE 43 (82)
T ss_dssp -------------CEECT-------------------------------------TCCSTTTTTSSCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCC-------------------------------------cCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 368889999998877655 7788899999999999999999999
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhhccCCCCCCCC
Q 011553 445 AGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEGLY 482 (483)
Q Consensus 445 A~~~A~~~~~~~it~ed~~~Al~~~~~~~~~~~~~~~~ 482 (483)
|++.|++++...|+.+||..|+++++.+........+|
T Consensus 44 Aa~~ai~~~~~~i~~~df~~Al~~v~~~~~~~~~~~~y 81 (82)
T 2dzn_B 44 AGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFDFY 81 (82)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHTTCC-----------
T ss_pred HHHHHHHhccCCcCHHHHHHHHHHHHcCcCChHHHHhh
Confidence 99999999999999999999999997543332233444
No 95
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=99.00 E-value=6.1e-10 Score=92.78 Aligned_cols=87 Identities=29% Similarity=0.614 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhhhCCCcccccceecccCCeEEEecccCCceeEEeccccCccCCCCccEEEEeceeeeeeccccCcCccc
Q 011553 97 KAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPM 176 (483)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 176 (483)
+....+++++.++..|..++++.+.++++++++.++.++.|++++.+++|++.++||++|.+++.++.++++++.+.||.
T Consensus 22 ~i~~lkeel~~L~~~P~~Vg~v~e~~d~~~~iVk~s~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~iLp~e~Dp~ 101 (109)
T 2wg5_A 22 KNYHLENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPM 101 (109)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEEEECTTSCEEEEETTSCEEEECBCTTSCTTTCCTTCEEEEETTTCCEEEEEC------
T ss_pred HHHHHHHHHHHHhCCCceEEEEEEEecCCEEEEEeCCCCEEEEEcccccCHHHCCCCCEEEECCcceEeEEeCCCCcCcc
Confidence 45567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceecc
Q 011553 177 VSVMKVE 183 (483)
Q Consensus 177 ~~~~~~~ 183 (483)
++.|.++
T Consensus 102 V~~M~ve 108 (109)
T 2wg5_A 102 VYGFEVE 108 (109)
T ss_dssp -------
T ss_pred chheEec
Confidence 9888664
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.96 E-value=7.3e-08 Score=95.95 Aligned_cols=183 Identities=22% Similarity=0.265 Sum_probs=111.5
Q ss_pred CCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH---
Q 011553 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI--- 262 (483)
Q Consensus 186 ~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~--- 262 (483)
|...-..++|.+..++.|.+.+.. ...++|+||+|+|||+|++.+++..+ ++.+++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 344556789999999999888753 14699999999999999999999875 6666665431
Q ss_pred ---------h---hhcCC------------------------c-hHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCC
Q 011553 263 ---------Q---KYLGD------------------------G-PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS 305 (483)
Q Consensus 263 ---------~---~~~g~------------------------~-~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~ 305 (483)
. ...+. . ...+..+...+....|.+|+|||++.+.... .
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~----~ 145 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG----S 145 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT----T
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC----c
Confidence 0 00100 0 1122222222222248899999999984210 0
Q ss_pred CChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC---------CCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHc
Q 011553 306 GGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE---------SLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS 376 (483)
Q Consensus 306 ~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~---------~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~ 376 (483)
....+....+..+++.. .++.+|+|+.... .....+. ||+...+.+++.+.++-.+++...+.
T Consensus 146 ~~~~~~~~~L~~~~~~~------~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~ 217 (350)
T 2qen_A 146 RGGKELLALFAYAYDSL------PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFR 217 (350)
T ss_dssp TTTHHHHHHHHHHHHHC------TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHhc------CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHH
Confidence 01233444444444431 3677888775421 1122232 36667899999999999999987765
Q ss_pred CCCCC-cccchHHHHhhccccc
Q 011553 377 RMTLA-DDVNLEEFVMTKDEFS 397 (483)
Q Consensus 377 ~~~~~-~~~~l~~la~~t~g~~ 397 (483)
..... ....+..+...+.|+.
T Consensus 218 ~~~~~~~~~~~~~i~~~tgG~P 239 (350)
T 2qen_A 218 EVNLDVPENEIEEAVELLDGIP 239 (350)
T ss_dssp TTTCCCCHHHHHHHHHHHTTCH
T ss_pred HcCCCCCHHHHHHHHHHhCCCH
Confidence 43322 2233455666666654
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.95 E-value=1.7e-08 Score=100.67 Aligned_cols=180 Identities=13% Similarity=0.166 Sum_probs=110.3
Q ss_pred CCCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHH----
Q 011553 186 PLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL---- 261 (483)
Q Consensus 186 ~~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l---- 261 (483)
+......++|.++.++.|.+ +.. ..++|+||+|+|||+|++.+++..+..++.+++...
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 70 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 70 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhcccc
Confidence 33455678899999999888 542 369999999999999999999998777777876542
Q ss_pred -------Hhh-----------------hcCC------------------chHHHHHHHHHHhhc--CCeEEEEcCCcccc
Q 011553 262 -------IQK-----------------YLGD------------------GPKLVRELFRVADDL--SPSIVFIDEIDAVG 297 (483)
Q Consensus 262 -------~~~-----------------~~g~------------------~~~~i~~~f~~a~~~--~p~Il~iDEiD~l~ 297 (483)
... ..+. ....+..++...... .|.+|+|||++.+.
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 71 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 150 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhh
Confidence 000 0000 011233444443332 38899999999984
Q ss_pred ccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC---------CCChhhcCCCccceEEEcCCCCHHHHH
Q 011553 298 TKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE---------SLDPALLRPGRIDRKIEFPLPDIKTRR 368 (483)
Q Consensus 298 ~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~---------~ld~allr~gR~~~~i~~~~P~~~~r~ 368 (483)
... ..+....+..+++. ..++.+|+|++... .....+. +|+...+.+++.+.++..
T Consensus 151 ~~~-------~~~~~~~l~~~~~~------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~--~r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 151 KLR-------GVNLLPALAYAYDN------LKRIKFIMSGSEMGLLYDYLRVEDPESPLF--GRAFSTVELKPFSREEAI 215 (357)
T ss_dssp GCT-------TCCCHHHHHHHHHH------CTTEEEEEEESSHHHHHHHTTTTCTTSTTT--TCCCEEEEECCCCHHHHH
T ss_pred ccC-------chhHHHHHHHHHHc------CCCeEEEEEcCchHHHHHHHhccCCCCccc--cCccceeecCCCCHHHHH
Confidence 310 11122333334432 13677888876432 1112232 366678999999999999
Q ss_pred HHHHHHHcCCCCCcccchHHHHhhccccch
Q 011553 369 RIFQIHTSRMTLADDVNLEEFVMTKDEFSG 398 (483)
Q Consensus 369 ~Il~~~~~~~~~~~~~~l~~la~~t~g~~~ 398 (483)
+++...+.......+. ...+...+.|+..
T Consensus 216 ~~l~~~~~~~~~~~~~-~~~i~~~t~G~P~ 244 (357)
T 2fna_A 216 EFLRRGFQEADIDFKD-YEVVYEKIGGIPG 244 (357)
T ss_dssp HHHHHHHHHHTCCCCC-HHHHHHHHCSCHH
T ss_pred HHHHHHHHHcCCCCCc-HHHHHHHhCCCHH
Confidence 9998766432222221 2556666666543
No 98
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.93 E-value=1.3e-09 Score=96.37 Aligned_cols=104 Identities=16% Similarity=0.299 Sum_probs=69.6
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCcccccccc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRY 301 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~ 301 (483)
...++|+||+|+|||+|+++++..+ +...+.+++.++... +....|.+|+|||++.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~--- 97 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGN--- 97 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCS---
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccCh---
Confidence 4569999999999999999999977 666788887765432 1123468999999987621
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC-CCCCC--hhhcCCCccceEEEc
Q 011553 302 DAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR-IESLD--PALLRPGRIDRKIEF 359 (483)
Q Consensus 302 ~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~-~~~ld--~allr~gR~~~~i~~ 359 (483)
..+..+.++++.+.. .+..++|+|||. |..+. +.|.+ |+..-..+
T Consensus 98 --------~~~~~l~~li~~~~~---~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~ 145 (149)
T 2kjq_A 98 --------EEQALLFSIFNRFRN---SGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVY 145 (149)
T ss_dssp --------HHHHHHHHHHHHHHH---HTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEEC
T ss_pred --------HHHHHHHHHHHHHHH---cCCcEEEEECCCCHHHccccHHHHH--HHhcCeeE
Confidence 125667777765432 223335667764 54333 78887 77544433
No 99
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.90 E-value=2.3e-09 Score=99.03 Aligned_cols=99 Identities=25% Similarity=0.239 Sum_probs=62.0
Q ss_pred CCCcccccccH----HHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEech
Q 011553 187 LESYADIGGLD----AQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGS 259 (483)
Q Consensus 187 ~~~~~di~Gl~----~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~ 259 (483)
..+|+++.+.+ .+++.+..++...-. ...+.+++|+||||||||+||+++|+.+ +.+++.++++
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEP---------GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCS---------SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhh---------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 34677777644 344555555543200 0123789999999999999999999987 5688888888
Q ss_pred HHHhhhcCCc-hHHHHHHHHHHhhcCCeEEEEcCCccc
Q 011553 260 ELIQKYLGDG-PKLVRELFRVADDLSPSIVFIDEIDAV 296 (483)
Q Consensus 260 ~l~~~~~g~~-~~~i~~~f~~a~~~~p~Il~iDEiD~l 296 (483)
++........ ...+..++.... .+.+|+|||++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~ 127 (202)
T 2w58_A 92 ELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred HHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 8765432211 001122233222 2359999999765
No 100
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.84 E-value=2.5e-07 Score=113.47 Aligned_cols=127 Identities=16% Similarity=0.210 Sum_probs=95.0
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCC
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAH 304 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~ 304 (483)
..++++.||+|||||.+++++|+.+|.+++.++|++-.. ...+..+|..+.... +.+++||++.+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~-------- 709 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRL-------- 709 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSS--------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhc--------
Confidence 467999999999999999999999999999999986432 345566676665543 69999999988
Q ss_pred CCChHHHHHHHHHHHHhc-------------cC--CcCCCCeEEEEEeCC----CCCCChhhcCCCccceEEEcCCCCHH
Q 011553 305 SGGEREIQRTMLELLNQL-------------DG--FDSRGDVKVILATNR----IESLDPALLRPGRIDRKIEFPLPDIK 365 (483)
Q Consensus 305 ~~~~~~~~~~l~~lL~~l-------------~~--~~~~~~v~vI~ttn~----~~~ld~allr~gR~~~~i~~~~P~~~ 365 (483)
+.++.+.+.+.+..+ .+ +.-..++.|++|.|. ...++++|.+ || +.+.+..||.+
T Consensus 710 ---~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~ 783 (2695)
T 4akg_A 710 ---DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSG 783 (2695)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHH
T ss_pred ---ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHH
Confidence 455666664443321 11 122346778888883 4579999998 99 68999999998
Q ss_pred HHHHHHH
Q 011553 366 TRRRIFQ 372 (483)
Q Consensus 366 ~r~~Il~ 372 (483)
...+|+-
T Consensus 784 ~i~ei~l 790 (2695)
T 4akg_A 784 TIAEMIL 790 (2695)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877754
No 101
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.79 E-value=1.4e-09 Score=107.51 Aligned_cols=121 Identities=22% Similarity=0.263 Sum_probs=69.0
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHcCC--ceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCcccccc
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTK 299 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~ 299 (483)
+...+.++|+||||||||+||.++|...+. .|+.+...+..+.+.......+..+++...... +|+||+++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGA 197 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccc
Confidence 444556899999999999999999987543 466652233333333344455555666555544 9999999998544
Q ss_pred ccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhh
Q 011553 300 RYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPAL 347 (483)
Q Consensus 300 r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~al 347 (483)
..+....+ ...+.+.+++..+..+....++.+|+++| +...++++
T Consensus 198 ~~~~s~~G--~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 198 AGGNTTSG--GISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred cccccccc--hHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 32110000 11233344444443333344678888888 45555554
No 102
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.73 E-value=1e-08 Score=101.61 Aligned_cols=97 Identities=23% Similarity=0.241 Sum_probs=60.4
Q ss_pred CCcccccccH----HHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC----CceEEEech
Q 011553 188 ESYADIGGLD----AQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS----ATFLRVVGS 259 (483)
Q Consensus 188 ~~~~di~Gl~----~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~----~~~~~v~~~ 259 (483)
.+|+++.+-. .++..+..++..+ +-....+++|+||||||||+||+++|+.+. .+++.++++
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~----------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQY----------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHC----------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhc----------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 5788877532 3444455555432 111257899999999999999999998654 678888888
Q ss_pred HHHhhhcCCc-hHHHHHHHHHHhhcCCeEEEEcCCccc
Q 011553 260 ELIQKYLGDG-PKLVRELFRVADDLSPSIVFIDEIDAV 296 (483)
Q Consensus 260 ~l~~~~~g~~-~~~i~~~f~~a~~~~p~Il~iDEiD~l 296 (483)
++........ ...+..++.... .+.+|||||++..
T Consensus 191 ~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 191 SFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 8776544321 111111222222 3469999999655
No 103
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=98.73 E-value=2.1e-08 Score=79.43 Aligned_cols=74 Identities=32% Similarity=0.615 Sum_probs=69.0
Q ss_pred HHHHHHHHHhhhCCCcccccceecccCCeEEEecccCCceeEEeccccCccCCCCccEEEEeceeeeeeccccC
Q 011553 98 AEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQD 171 (483)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 171 (483)
....+++++.++..|..++++.|.++++++++.++.+++|++++.+++|++.++||++|.++..++.++++++.
T Consensus 4 v~~lkeei~~L~~~P~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~vLp~ 77 (85)
T 3h43_A 4 NEILRRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPE 77 (85)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEEEEEETTEEEEEETTSSEEEEEBCTTSCGGGCCTTCEEEECTTTCCEEEECC-
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEcCCCEEEEEeCCCCeEEEEecCccCHHHCCCCCEEEECCcccCHhhhhhh
Confidence 45667889999999999999999999999999999999999999999999999999999999999999988874
No 104
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.72 E-value=2.1e-08 Score=93.06 Aligned_cols=127 Identities=17% Similarity=0.165 Sum_probs=78.5
Q ss_pred ceEEEcCCCCchHHHHHHHHHH--------cC-CceEEEechHHHhhhc----------CCchH--HHHHHHHHH--hhc
Q 011553 227 GVILYGEPGTGKTLLAKAVANS--------TS-ATFLRVVGSELIQKYL----------GDGPK--LVRELFRVA--DDL 283 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~--------l~-~~~~~v~~~~l~~~~~----------g~~~~--~i~~~f~~a--~~~ 283 (483)
-.|++|+||||||++|.+.+.. .| .+++..++.++..... ..... ....++..+ ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 4889999999999999886543 34 6666666655532221 11110 112233321 223
Q ss_pred CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCC
Q 011553 284 SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPD 363 (483)
Q Consensus 284 ~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~ 363 (483)
..+||+|||++.+.+.+.+.. .. ..++..+.. .....+-+|++|+.++.++.++++ |+...++++.|.
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~-e~--------~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~ 154 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGS-KI--------PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNK 154 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTC-CC--------CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECS
T ss_pred CceEEEEEChhhhccCccccc-hh--------HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcc
Confidence 457999999999975542211 11 123333332 224467788899989999999988 999999998765
Q ss_pred HH
Q 011553 364 IK 365 (483)
Q Consensus 364 ~~ 365 (483)
..
T Consensus 155 ~~ 156 (199)
T 2r2a_A 155 MG 156 (199)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 105
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.59 E-value=3e-08 Score=100.84 Aligned_cols=119 Identities=23% Similarity=0.255 Sum_probs=75.0
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccc-c
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGT-K 299 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~-~ 299 (483)
++..+..++|+||||+|||||+++++..++..++.+....- .. -|......+..++++||++.+.. .
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~----------~~--~~~lg~~~q~~~~l~dd~~~~~~~~ 232 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD----------RL--NFELGVAIDQFLVVFEDVKGTGGES 232 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT----------TH--HHHHGGGTTCSCEEETTCCCSTTTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch----------hH--HHHHHHhcchhHHHHHHHHHHHHHH
Confidence 56777889999999999999999999988776554332210 00 11122222345789999998864 2
Q ss_pred ccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCC
Q 011553 300 RYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPL 361 (483)
Q Consensus 300 r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~ 361 (483)
+.. ..+.. .. .+..+.+.+++ .+.|+++||+++.+ +++++|+|++..+....
T Consensus 233 r~l-~~~~~--~~-~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 233 RDL-PSGQG--IN-NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTC-CCCSH--HH-HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred hhc-cccCc--ch-HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 211 11111 11 12223333433 35688899999999 78999999986655543
No 106
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.58 E-value=8.3e-08 Score=88.70 Aligned_cols=113 Identities=18% Similarity=0.254 Sum_probs=63.2
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccC
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYD 302 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~ 302 (483)
+..+++|||||||||||++|.++|+.+....+.+..+. ..+ .+..+. ...||+|||+|.-.
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f----------~l~~l~--~~kIiiLDEad~~~----- 116 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHF----------WLEPLT--DTKVAMLDDATTTC----- 116 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCG----------GGGGGT--TCSSEEEEEECHHH-----
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chh----------hhcccC--CCCEEEEECCCchh-----
Confidence 33467999999999999999999999865433221110 000 011111 12499999997421
Q ss_pred CCCCChHHHHHHHHHHHHh----ccCCcCC----CCeEEEEEeCCC---CCCChhhcCCCccceEEEcCCC
Q 011553 303 AHSGGEREIQRTMLELLNQ----LDGFDSR----GDVKVILATNRI---ESLDPALLRPGRIDRKIEFPLP 362 (483)
Q Consensus 303 ~~~~~~~~~~~~l~~lL~~----l~~~~~~----~~v~vI~ttn~~---~~ld~allr~gR~~~~i~~~~P 362 (483)
.......+..+++. +|.-... ....+|.|||.. +..-+.|.+ |+. .+.|+.|
T Consensus 117 -----~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~-~f~F~~~ 179 (212)
T 1tue_A 117 -----WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RIT-VFEFPNA 179 (212)
T ss_dssp -----HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCE-EEECCSC
T ss_pred -----HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEE-EEEcCCC
Confidence 12223333344432 1110101 135789999973 223366877 885 7888754
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.50 E-value=4.5e-07 Score=111.98 Aligned_cols=139 Identities=19% Similarity=0.257 Sum_probs=93.1
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc-CCceEEEechHHHhhhcCCchHHHHHHHHHH----h----h--------cCCeE
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST-SATFLRVVGSELIQKYLGDGPKLVRELFRVA----D----D--------LSPSI 287 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l-~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a----~----~--------~~p~I 287 (483)
.++|||+||||||||+++..+...+ +.+++.++++.-. .+..+...+... . . ....|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 4679999999999998876655544 4567777776532 233444444321 0 0 11259
Q ss_pred EEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCc-------CCCCeEEEEEeCCC-----CCCChhhcCCCccce
Q 011553 288 VFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD-------SRGDVKVILATNRI-----ESLDPALLRPGRIDR 355 (483)
Q Consensus 288 l~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~-------~~~~v~vI~ttn~~-----~~ld~allr~gR~~~ 355 (483)
+||||++.-... .-+...+...|.++++.-.-+. ...++.+|+|+|.| ..++++++| ||.
T Consensus 1378 lFiDDiNmp~~D-----~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~- 1449 (3245)
T 3vkg_A 1378 VFCDEINLPSTD-----KYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP- 1449 (3245)
T ss_dssp EEETTTTCCCCC-----TTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-
T ss_pred EEecccCCCCcc-----ccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-
Confidence 999999754222 1223456677777776422111 12468899999987 459999999 996
Q ss_pred EEEcCCCCHHHHHHHHHHHHcC
Q 011553 356 KIEFPLPDIKTRRRIFQIHTSR 377 (483)
Q Consensus 356 ~i~~~~P~~~~r~~Il~~~~~~ 377 (483)
++.++.|+.++...|+..++..
T Consensus 1450 vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1450 ILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp EEECCCCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 7999999999999998866543
No 108
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.49 E-value=6.1e-07 Score=81.57 Aligned_cols=122 Identities=18% Similarity=0.228 Sum_probs=69.1
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEechHH---------------------------------HhhhcCCchHH--
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL---------------------------------IQKYLGDGPKL-- 272 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l---------------------------------~~~~~g~~~~~-- 272 (483)
+.|+||+|+|||||++.++..++..+.-....+. ...+.......
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~~ 82 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEE 82 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHHH
Confidence 7899999999999999999987644332211111 01111111111
Q ss_pred HHHHHHHH-----hhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCC--CCh
Q 011553 273 VRELFRVA-----DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIES--LDP 345 (483)
Q Consensus 273 i~~~f~~a-----~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~--ld~ 345 (483)
.+-.+..+ ....|.++++||++-+ ++.+......+.+++.. .+..+|++++..+. +-.
T Consensus 83 qr~~la~aa~~~~l~~~p~llilDEigp~--------~~ld~~~~~~l~~~l~~-------~~~~~i~~~H~~h~~~~~~ 147 (178)
T 1ye8_A 83 LAIPILERAYREAKKDRRKVIIIDEIGKM--------ELFSKKFRDLVRQIMHD-------PNVNVVATIPIRDVHPLVK 147 (178)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEECCCSTT--------GGGCHHHHHHHHHHHTC-------TTSEEEEECCSSCCSHHHH
T ss_pred HHHHHHhhccccccccCCCEEEEeCCCCc--------ccCCHHHHHHHHHHHhc-------CCCeEEEEEccCCCchHHH
Confidence 22233332 4567899999997543 22345566777777653 24446677753222 224
Q ss_pred hhcCCCcc-ceEEEcCCCCHHH
Q 011553 346 ALLRPGRI-DRKIEFPLPDIKT 366 (483)
Q Consensus 346 allr~gR~-~~~i~~~~P~~~~ 366 (483)
.+.+ |- .+++++...+.++
T Consensus 148 ~i~~--r~~~~i~~~~~~~r~~ 167 (178)
T 1ye8_A 148 EIRR--LPGAVLIELTPENRDV 167 (178)
T ss_dssp HHHT--CTTCEEEECCTTTTTT
T ss_pred HHHh--cCCcEEEEecCcCHHH
Confidence 5555 43 2467777666433
No 109
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.43 E-value=2.8e-07 Score=109.79 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=78.5
Q ss_pred CChhhhhhhC---CCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechH----HHhhhcC------------Cc
Q 011553 212 THPELYEDIG---IKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSE----LIQKYLG------------DG 269 (483)
Q Consensus 212 ~~~~~~~~~g---~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~----l~~~~~g------------~~ 269 (483)
..+++-..+| +..+++++|+||||||||+||.+++.+. +.....++..+ +.....| ..
T Consensus 1411 G~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~ 1490 (2050)
T 3cmu_A 1411 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 1490 (2050)
T ss_dssp SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSH
T ss_pred CCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChH
Confidence 3444555555 7788899999999999999999998765 33444454432 2222223 33
Q ss_pred hHHHHHHHHHHhhcCCeEEEEcCCccccccc---cCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEE
Q 011553 270 PKLVRELFRVADDLSPSIVFIDEIDAVGTKR---YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILA 336 (483)
Q Consensus 270 ~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r---~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~t 336 (483)
+..++.++..++...|++||||+++.+.+.. .+..++....-.+.+.++|.++.++....++++|++
T Consensus 1491 E~~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~t 1560 (2050)
T 3cmu_A 1491 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 1560 (2050)
T ss_dssp HHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 4667777778888899999999999887642 111111111123445555555555544556666665
No 110
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.38 E-value=1.8e-05 Score=98.11 Aligned_cols=126 Identities=20% Similarity=0.242 Sum_probs=92.7
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCC
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAH 304 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~ 304 (483)
..|..+.||+|||||.+++.+|+.+|.+++.++|++-.+ ...+..+|..+... .+-.++||++.+
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl-------- 668 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRL-------- 668 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSS--------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcC--------
Confidence 345789999999999999999999999999999986332 23455566655443 358899999998
Q ss_pred CCChHHHHHHHHHHHHh-------------cc-C--CcCCCCeEEEEEeCC----CCCCChhhcCCCccceEEEcCCCCH
Q 011553 305 SGGEREIQRTMLELLNQ-------------LD-G--FDSRGDVKVILATNR----IESLDPALLRPGRIDRKIEFPLPDI 364 (483)
Q Consensus 305 ~~~~~~~~~~l~~lL~~-------------l~-~--~~~~~~v~vI~ttn~----~~~ld~allr~gR~~~~i~~~~P~~ 364 (483)
+.+....+.+.+.. +. + +.-..++.|++|.|. ...||++|.. || +.|.+..||.
T Consensus 669 ---~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~ 742 (3245)
T 3vkg_A 669 ---EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDR 742 (3245)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCH
T ss_pred ---CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCH
Confidence 55666665554431 11 1 222346788888884 4679999998 99 5899999999
Q ss_pred HHHHHHH
Q 011553 365 KTRRRIF 371 (483)
Q Consensus 365 ~~r~~Il 371 (483)
+...+|+
T Consensus 743 ~~i~ei~ 749 (3245)
T 3vkg_A 743 EMIAQVM 749 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777664
No 111
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.34 E-value=7e-07 Score=86.03 Aligned_cols=118 Identities=19% Similarity=0.271 Sum_probs=67.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHHHHhhcCCeEEEEcCCccccccccCCC
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAH 304 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~ 304 (483)
.++++||||||||||++|++||+.+.. +-.++.+. ..+ .|.. .....|++.||....-
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~--~~f----------~l~~--~~~k~i~l~Ee~~~~~------- 161 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN--ENF----------PFND--CVDKMVIWWEEGKMTA------- 161 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC--SSC----------TTGG--GSSCSEEEECSCCEET-------
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc--ccc----------cccc--ccccEEEEeccccchh-------
Confidence 457999999999999999999998654 22222211 000 1111 1223477777765441
Q ss_pred CCChHHHHHHHHHHHH----hccCCc----CCCCeEEEEEeCC-C----------CCCChhhcCCCccceEEEcC-----
Q 011553 305 SGGEREIQRTMLELLN----QLDGFD----SRGDVKVILATNR-I----------ESLDPALLRPGRIDRKIEFP----- 360 (483)
Q Consensus 305 ~~~~~~~~~~l~~lL~----~l~~~~----~~~~v~vI~ttn~-~----------~~ld~allr~gR~~~~i~~~----- 360 (483)
+....+..++. .++.-. ......+|+|||. + +...++|.+ |+- .+.|+
T Consensus 162 -----d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s--R~~-~f~F~~~~p~ 233 (267)
T 1u0j_A 162 -----KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD--RMF-KFELTRRLDH 233 (267)
T ss_dssp -----TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT--TEE-EEECCSCCCT
T ss_pred -----HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh--hEE-EEECCCcCCc
Confidence 12233344443 111110 1135778999986 2 244578888 884 88887
Q ss_pred ---CCCHHHHHHHHH
Q 011553 361 ---LPDIKTRRRIFQ 372 (483)
Q Consensus 361 ---~P~~~~r~~Il~ 372 (483)
+.+.++-...|.
T Consensus 234 ~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 234 DFGKVTKQEVKDFFR 248 (267)
T ss_dssp TSCCCCHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHH
Confidence 455666666665
No 112
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.31 E-value=5.3e-06 Score=82.96 Aligned_cols=129 Identities=14% Similarity=0.127 Sum_probs=83.4
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcC---C-ceEEEechHHHhhhcCCchHHHHHHHHHHhh----cCCeEEEEcCCcc-
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTS---A-TFLRVVGSELIQKYLGDGPKLVRELFRVADD----LSPSIVFIDEIDA- 295 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~---~-~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~Il~iDEiD~- 295 (483)
+..+|||||+|+||++.++++++.+. . ++..+... + ...++.+++.+.. ....||+|||++.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~k 88 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPENG 88 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCSSC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCCCC
Confidence 45699999999999999999988652 1 22222111 1 1223444444332 3356999999988
Q ss_pred ccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC------CCChhhcCCCccceEEEcCCCCHHHHHH
Q 011553 296 VGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE------SLDPALLRPGRIDRKIEFPLPDIKTRRR 369 (483)
Q Consensus 296 l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~------~ld~allr~gR~~~~i~~~~P~~~~r~~ 369 (483)
+. ...+..|+..+.+ +..++++|++|+.++ .+.+++.+ |+. ++.|.+++..+...
T Consensus 89 l~-----------~~~~~aLl~~le~-----p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~~-~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 89 PN-----------AAINEQLLTLTGL-----LHDDLLLIVRGNKLSKAQENAAWFTALAN--RSV-QVTCQTPEQAQLPR 149 (343)
T ss_dssp CC-----------TTHHHHHHHHHTT-----CBTTEEEEEEESCCCTTTTTSHHHHHHTT--TCE-EEEECCCCTTHHHH
T ss_pred CC-----------hHHHHHHHHHHhc-----CCCCeEEEEEcCCCChhhHhhHHHHHHHh--Cce-EEEeeCCCHHHHHH
Confidence 62 2244556665543 234667777666533 35577777 774 89999999999998
Q ss_pred HHHHHHcCCCCC
Q 011553 370 IFQIHTSRMTLA 381 (483)
Q Consensus 370 Il~~~~~~~~~~ 381 (483)
.++..+...++.
T Consensus 150 ~l~~~~~~~g~~ 161 (343)
T 1jr3_D 150 WVAARAKQLNLE 161 (343)
T ss_dssp HHHHHHHHTTCE
T ss_pred HHHHHHHHcCCC
Confidence 888887766544
No 113
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.92 E-value=2.4e-05 Score=72.85 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=26.6
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEe
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVV 257 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~ 257 (483)
+.....++|+||||+|||+|++.++... +...+.++
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4455568999999999999999999643 34444443
No 114
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.91 E-value=1.7e-05 Score=79.84 Aligned_cols=117 Identities=17% Similarity=0.239 Sum_probs=64.2
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHh----hhcC------------CchHHHHHHHHHHhh
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQ----KYLG------------DGPKLVRELFRVADD 282 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~----~~~g------------~~~~~i~~~f~~a~~ 282 (483)
+....-++|+||||+|||+|+..++..+ +...++++...... ..+| ..+..+..+....+.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRS 137 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhh
Confidence 4455569999999999999999999764 45666666543211 1111 112222222222334
Q ss_pred cCCeEEEEcCCccccc-cccCCCCCCh--HHHHHHHHHHHHhccCCcCCCCeEEEEEeC
Q 011553 283 LSPSIVFIDEIDAVGT-KRYDAHSGGE--REIQRTMLELLNQLDGFDSRGDVKVILATN 338 (483)
Q Consensus 283 ~~p~Il~iDEiD~l~~-~r~~~~~~~~--~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn 338 (483)
..|.+++||.+..+.+ .......+.. ....+.+.+++..+..+....++.||++..
T Consensus 138 ~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inq 196 (356)
T 3hr8_A 138 GVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQ 196 (356)
T ss_dssp SCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEE
T ss_pred cCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 6788999999988875 2222111111 012344444444443333345666777643
No 115
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.89 E-value=3.4e-05 Score=72.53 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=48.8
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHH--c-------CCceEEEechH------HHh--hhcCCc--------------
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANS--T-------SATFLRVVGSE------LIQ--KYLGDG-------------- 269 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~--l-------~~~~~~v~~~~------l~~--~~~g~~-------------- 269 (483)
|+....-++|+||||+|||+|++.++.. + +...++++... +.. ...+..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 3455566999999999999999999984 3 34566665543 110 011111
Q ss_pred -hH----HHHHHHHHHhhcCCeEEEEcCCccccc
Q 011553 270 -PK----LVRELFRVADDLSPSIVFIDEIDAVGT 298 (483)
Q Consensus 270 -~~----~i~~~f~~a~~~~p~Il~iDEiD~l~~ 298 (483)
.. .+..+........|.+|+||++..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 11 122233444456789999999988753
No 116
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.89 E-value=2.6e-05 Score=72.19 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=30.3
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEech
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGS 259 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~ 259 (483)
+....-++|+||||+|||+|+..+|...+...+.++..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 55556699999999999999999998556666666543
No 117
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.88 E-value=4.1e-05 Score=72.27 Aligned_cols=114 Identities=25% Similarity=0.304 Sum_probs=61.7
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHH--HH--cCCceEEEechHH----Hh--hhcCC----------------------
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVA--NS--TSATFLRVVGSEL----IQ--KYLGD---------------------- 268 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia--~~--l~~~~~~v~~~~l----~~--~~~g~---------------------- 268 (483)
|+....-+.|+||+|+|||||+++++ .. .+...+.++.... .. ...|-
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 34555669999999999999999998 32 2333333332110 00 00010
Q ss_pred --------------chHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEE
Q 011553 269 --------------GPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVI 334 (483)
Q Consensus 269 --------------~~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI 334 (483)
.......+........|.+|+|||.-.+..... ........+..++..+.. .++.||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~~----~g~tii 176 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILLE----MGVTTI 176 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHHH----HCCEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHHH----CCCeEE
Confidence 111223333344456799999999876643110 112333445566655421 256788
Q ss_pred EEeCCCCCC
Q 011553 335 LATNRIESL 343 (483)
Q Consensus 335 ~ttn~~~~l 343 (483)
++|+..+..
T Consensus 177 ~vtH~~~~~ 185 (251)
T 2ehv_A 177 LTTEAPDPQ 185 (251)
T ss_dssp EEECCC---
T ss_pred EEECCCCCC
Confidence 888876554
No 118
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.87 E-value=3.9e-05 Score=77.59 Aligned_cols=118 Identities=20% Similarity=0.290 Sum_probs=62.8
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHH----hhhcC------------CchHHHHHHHHHHh
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELI----QKYLG------------DGPKLVRELFRVAD 281 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~----~~~~g------------~~~~~i~~~f~~a~ 281 (483)
|+....-++|+||||+|||+||..+|... +.+.+.++...-. ....| ..+..+..+....+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 34555669999999999999999988754 4566666543211 11111 11222222222334
Q ss_pred hcCCeEEEEcCCccccccc-cCCCCCCh-H-HHHHHHHHHHHhccCCcCCCCeEEEEEeC
Q 011553 282 DLSPSIVFIDEIDAVGTKR-YDAHSGGE-R-EIQRTMLELLNQLDGFDSRGDVKVILATN 338 (483)
Q Consensus 282 ~~~p~Il~iDEiD~l~~~r-~~~~~~~~-~-~~~~~l~~lL~~l~~~~~~~~v~vI~ttn 338 (483)
...+++|+||.+..+.... .+...+.. . ...+.+.+++..+..+....++.||++..
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 4568899999999987422 11100000 0 11133444444443333345677777653
No 119
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.85 E-value=0.0002 Score=76.61 Aligned_cols=170 Identities=13% Similarity=0.113 Sum_probs=93.4
Q ss_pred CcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHH-------c--CCceEEEech
Q 011553 189 SYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANS-------T--SATFLRVVGS 259 (483)
Q Consensus 189 ~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~-------l--~~~~~~v~~~ 259 (483)
....++|.+..+.+|.+.+... ....+-|+|+||+|+|||+||..+++. . +.-++.+...
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 4456899999999999988641 112345999999999999999999742 2 1233344321
Q ss_pred ---HHHhh------hcC----------CchHHHHHHH-HHHhh-cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHH
Q 011553 260 ---ELIQK------YLG----------DGPKLVRELF-RVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLEL 318 (483)
Q Consensus 260 ---~l~~~------~~g----------~~~~~i~~~f-~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~l 318 (483)
.+... ..+ .....+...+ ..... ..|.+|+||+++.. . .
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------------~----~ 250 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------------W----V 250 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------------H----H
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------------H----H
Confidence 11111 111 1111222222 22222 25789999999643 1 1
Q ss_pred HHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEE-cCCCCHHHHHHHHHHHHcCCCCCcccchHHHHhhccccc
Q 011553 319 LNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIE-FPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFS 397 (483)
Q Consensus 319 L~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~-~~~P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~ 397 (483)
+.. + ..+..||+||........ . . +.. ..+. +...+.++-.++|..+...-..........++..+.|..
T Consensus 251 l~~---l--~~~~~ilvTsR~~~~~~~-~-~-~~~-~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 251 LKA---F--DSQCQILLTTRDKSVTDS-V-M-GPK-YVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp HHT---T--CSSCEEEEEESCGGGGTT-C-C-SCE-EEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred HHH---h--cCCCeEEEECCCcHHHHh-c-C-CCc-eEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 222 2 235678888875432111 1 1 122 1222 246788999999987765421111233556666666654
Q ss_pred h
Q 011553 398 G 398 (483)
Q Consensus 398 ~ 398 (483)
-
T Consensus 322 L 322 (591)
T 1z6t_A 322 L 322 (591)
T ss_dssp H
T ss_pred H
Confidence 3
No 120
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.84 E-value=1.5e-05 Score=80.17 Aligned_cols=78 Identities=19% Similarity=0.251 Sum_probs=48.5
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHH----hhhcCC------------chHHHHHHHHHHh
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELI----QKYLGD------------GPKLVRELFRVAD 281 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~----~~~~g~------------~~~~i~~~f~~a~ 281 (483)
|+....-++|+||||+|||+|+..++... +...++++...-. ....|. .+..+..+...+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 34555669999999999999999998653 4455556543211 111121 1222222223334
Q ss_pred hcCCeEEEEcCCccccc
Q 011553 282 DLSPSIVFIDEIDAVGT 298 (483)
Q Consensus 282 ~~~p~Il~iDEiD~l~~ 298 (483)
...|.+|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56789999999998864
No 121
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.78 E-value=1.3e-05 Score=95.64 Aligned_cols=130 Identities=18% Similarity=0.253 Sum_probs=79.2
Q ss_pred CCCChhhhhhhC---CCCCCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHHHhhh----cCC--------chH
Q 011553 210 PLTHPELYEDIG---IKPPKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQKY----LGD--------GPK 271 (483)
Q Consensus 210 pl~~~~~~~~~g---~~~~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l~~~~----~g~--------~~~ 271 (483)
|...+++..-+| +.+...++|+|+||+|||+||..+|..+. .++++++..+..... .|- .+.
T Consensus 714 ~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~ 793 (2050)
T 3cmu_A 714 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD 793 (2050)
T ss_dssp CCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCS
T ss_pred ecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCC
Confidence 344556666663 67777799999999999999999998663 468888765433221 221 112
Q ss_pred HHHHHHHHHhh----cCCeEEEEcCCccccc-cccCCCCC-ChH-HHHHHHHHHHHhccCCcCCCCeEEEEEeCC
Q 011553 272 LVRELFRVADD----LSPSIVFIDEIDAVGT-KRYDAHSG-GER-EIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (483)
Q Consensus 272 ~i~~~f~~a~~----~~p~Il~iDEiD~l~~-~r~~~~~~-~~~-~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~ 339 (483)
.+..++..++. ..|++||||.++.+.. ...+...+ ... -..+.+.+++..+..+....+|.||+++.-
T Consensus 794 ~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv 868 (2050)
T 3cmu_A 794 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (2050)
T ss_dssp SHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred CHHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 24445555443 6789999999999875 22111111 011 112334555555555445567888887643
No 122
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.77 E-value=8.8e-05 Score=76.62 Aligned_cols=99 Identities=23% Similarity=0.311 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCC-ChHHHHHHHHHHHHhccC-----CcCCCCeEEEEEe----CC
Q 011553 270 PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSG-GEREIQRTMLELLNQLDG-----FDSRGDVKVILAT----NR 339 (483)
Q Consensus 270 ~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~-~~~~~~~~l~~lL~~l~~-----~~~~~~v~vI~tt----n~ 339 (483)
....+..+..|..+ +|+|+||||+++........+ +...+|+.|+.+++--.. ....++|+||+|. +.
T Consensus 238 ~~~~~~ai~~ae~~--~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~ 315 (444)
T 1g41_A 238 EELKQKAIDAVEQN--GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVAR 315 (444)
T ss_dssp HHHHHHHHHHHHHH--CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCC
T ss_pred HHHHHHHHHHhccC--CeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCC
Confidence 34455556655322 599999999998653211111 112367788888863110 1235689999998 23
Q ss_pred CCCCChhhcCCCccceEEEcCCCCHHHHHHHHH
Q 011553 340 IESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ 372 (483)
Q Consensus 340 ~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~ 372 (483)
+..+.|+|+. ||+.++.|+.++.++..+|+.
T Consensus 316 ~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 316 PSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred hhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 4446688988 999999999999999999984
No 123
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.76 E-value=7.2e-05 Score=77.94 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=36.4
Q ss_pred cceecccCCCCCccccc-ccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 178 SVMKVEKAPLESYADIG-GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 178 ~~~~~~~~~~~~~~di~-Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
+..+..++.+.+|+++. ++..++..+...+... ...++|.|+||||||+++.+++..+
T Consensus 11 ~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~--------------~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 11 SSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEK--------------KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ----------CCSSCCCHHHHHHHHHHHHHHHSS--------------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCccccCCCccccCCHHHHHHHHHHHHHHhcC--------------CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34466777788888875 5666666666655431 2269999999999999999999866
No 124
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.75 E-value=4.2e-05 Score=75.99 Aligned_cols=117 Identities=21% Similarity=0.275 Sum_probs=64.1
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---------CCceEEEechHH------Hh--hhcCC---------------
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---------SATFLRVVGSEL------IQ--KYLGD--------------- 268 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---------~~~~~~v~~~~l------~~--~~~g~--------------- 268 (483)
|+....-++|+||||+|||+|+..+|... +...++++...- .. ...|.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 35555669999999999999999999864 445666655431 10 01111
Q ss_pred -ch---HHHHHHHHHHhh-cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeC
Q 011553 269 -GP---KLVRELFRVADD-LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 338 (483)
Q Consensus 269 -~~---~~i~~~f~~a~~-~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn 338 (483)
.. ..+..+...... ..+.+|+||.+..+........ +...+.+..+.+++..+..+....++.||++..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq 256 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQ 256 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT-TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 11 122333444444 6789999999998864321110 111122223444444333332234566777653
No 125
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.73 E-value=5.1e-05 Score=70.61 Aligned_cols=29 Identities=38% Similarity=0.511 Sum_probs=23.8
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
|+....-+.|+||+|+|||+|++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34445559999999999999999999843
No 126
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.72 E-value=0.00032 Score=81.18 Aligned_cols=171 Identities=13% Similarity=0.111 Sum_probs=97.9
Q ss_pred CCCcccccccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc---C----CceEEEech
Q 011553 187 LESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST---S----ATFLRVVGS 259 (483)
Q Consensus 187 ~~~~~di~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l---~----~~~~~v~~~ 259 (483)
+.....++|.++.+++|.+.+... -...+-|.|+|+.|+|||+||+.+++.. . ...+.++.+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~ 188 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 188 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECC
T ss_pred CCCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEEC
Confidence 344566899999999999988532 1223458899999999999999988752 2 122233322
Q ss_pred H-----HH-------hhhc---------CCchHHHHHHHHHHhhc--CCeEEEEcCCccccccccCCCCCChHHHHHHHH
Q 011553 260 E-----LI-------QKYL---------GDGPKLVRELFRVADDL--SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML 316 (483)
Q Consensus 260 ~-----l~-------~~~~---------g~~~~~i~~~f~~a~~~--~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~ 316 (483)
. +. .... ......+...+...... .+.+|+||+++...
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~------------------- 249 (1249)
T 3sfz_A 189 KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW------------------- 249 (1249)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-------------------
T ss_pred CcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-------------------
Confidence 1 11 0000 01122233333332222 36799999997540
Q ss_pred HHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCC-CCHHHHHHHHHHHHcCCCCCcccchHHHHhhccc
Q 011553 317 ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPL-PDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE 395 (483)
Q Consensus 317 ~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~-P~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g 395 (483)
.+ ..+ ..+..||+||........ .. .....+.++. .+.++-.++|..+.....-.......+++....|
T Consensus 250 -~~---~~~--~~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~g 319 (1249)
T 3sfz_A 250 -VL---KAF--DNQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKG 319 (1249)
T ss_dssp -HH---TTT--CSSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTT
T ss_pred -HH---Hhh--cCCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCC
Confidence 11 112 235678899876543321 11 2234677775 8889999999877643322222234556666655
Q ss_pred cc
Q 011553 396 FS 397 (483)
Q Consensus 396 ~~ 397 (483)
+.
T Consensus 320 lP 321 (1249)
T 3sfz_A 320 SP 321 (1249)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 127
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.70 E-value=3.6e-05 Score=68.90 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=32.9
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~ 263 (483)
.-|+|+|+|||||||++++++..++.+|+.++...+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence 45899999999999999999999999998877665543
No 128
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.68 E-value=7.2e-05 Score=75.34 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=49.1
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechH----HHhhhcCC-----------chHHHHHHHH-HHh
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSE----LIQKYLGD-----------GPKLVRELFR-VAD 281 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~----l~~~~~g~-----------~~~~i~~~f~-~a~ 281 (483)
|+....-++|+||||+|||+||..+|... +.+.+.++... ......|. ....+..++. ..+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 34556669999999999999999988753 45666676522 11111111 1122223332 233
Q ss_pred hcCCeEEEEcCCccccc
Q 011553 282 DLSPSIVFIDEIDAVGT 298 (483)
Q Consensus 282 ~~~p~Il~iDEiD~l~~ 298 (483)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 45688999999998864
No 129
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.67 E-value=4.4e-05 Score=76.53 Aligned_cols=118 Identities=18% Similarity=0.214 Sum_probs=63.0
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---------CCceEEEechHH------Hh--hhcCC---------------
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---------SATFLRVVGSEL------IQ--KYLGD--------------- 268 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---------~~~~~~v~~~~l------~~--~~~g~--------------- 268 (483)
|+....-++|+||||+|||+|+..+|... +...++++.... .. ...|.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 34555558999999999999999999862 445666654331 10 00111
Q ss_pred -ch---HHHHHHHHHHhh--cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC
Q 011553 269 -GP---KLVRELFRVADD--LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (483)
Q Consensus 269 -~~---~~i~~~f~~a~~--~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~ 339 (483)
.. ..+..+...... ..+.+|+||.+..+........ +...+.+..+.+++..+..+....++.||+++..
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGR-GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGG-GCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 11 112223344444 5688999999998863321100 1111112233344333333323346677776543
No 130
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.65 E-value=9.7e-05 Score=75.54 Aligned_cols=118 Identities=18% Similarity=0.286 Sum_probs=62.1
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---------CCceEEEechHH------H--hhhcCCch-------------
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---------SATFLRVVGSEL------I--QKYLGDGP------------- 270 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---------~~~~~~v~~~~l------~--~~~~g~~~------------- 270 (483)
|+....-++|+||||||||+|++.+|-.. +...++++..+. . ...+|-..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 45555669999999999999999776432 233566654331 0 01111111
Q ss_pred ------HHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC
Q 011553 271 ------KLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR 339 (483)
Q Consensus 271 ------~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~ 339 (483)
..+..+........|.+|+||++-.+....... .+.-.+.++.+.+++..+..+....++.||++++.
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg-~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG-RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 112223333444678999999998776432211 11112223333344433333322346778888765
No 131
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.64 E-value=2.3e-05 Score=71.38 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=18.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
-++++||+|+|||+++..++..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998666654
No 132
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.61 E-value=0.00012 Score=73.65 Aligned_cols=29 Identities=38% Similarity=0.511 Sum_probs=24.6
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
|+....-+.|+||||+|||+|++.++...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34555559999999999999999999876
No 133
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.51 E-value=0.00015 Score=71.27 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=47.1
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHc-----CCceEEEechHHH----hhhcCCc--------hHHHHHH-H---HH-
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANST-----SATFLRVVGSELI----QKYLGDG--------PKLVREL-F---RV- 279 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l-----~~~~~~v~~~~l~----~~~~g~~--------~~~i~~~-f---~~- 279 (483)
+... -++|+||||+|||+|+..++... +...++++..+-. ....|-. +....++ + +.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 4444 48999999999999988776543 5567777654321 1111211 1112222 2 22
Q ss_pred --HhhcCCeEEEEcCCcccccc
Q 011553 280 --ADDLSPSIVFIDEIDAVGTK 299 (483)
Q Consensus 280 --a~~~~p~Il~iDEiD~l~~~ 299 (483)
.+...|.+|+||-|..+.+.
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBCC
T ss_pred HHhhccCceEEEEecccccccc
Confidence 34567999999999999753
No 134
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=97.51 E-value=0.00025 Score=66.39 Aligned_cols=79 Identities=23% Similarity=0.237 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHHHhhhCCCcccccceecccCCeEEEecccCCceeEEeccccCccCCCCccEEEEeceeeeeeccccCc
Q 011553 93 PQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDE 172 (483)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 172 (483)
...++..+++++++.|+..|..+++|.+.++++.+++.+ .++.+++++.+.++.+.++||.+|.+ +.++.++++++.+
T Consensus 79 ~ar~El~~LkeElerL~sPPL~iGtvlev~dd~~aiV~s-~Gr~~~V~Vsp~Vd~e~LkPG~rVaL-NeSlaVVevLp~E 156 (251)
T 3m9b_A 79 EARQQLLALREEVDRLGQPPSGYGVLLATHDDDTVDVFT-SGRKMRLTCSPNIDAASLKKGQTVRL-NEALTVVEAGTFE 156 (251)
T ss_dssp HHHHHHHHHHHHHHHHHSCCEEEEEEEEECSSSCEEEEC-SSSCCEECBCTTSCTTTSCSSCEEEE-CTTCCBCCCCCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEEEEcCCCEEEEEe-CCceEEEEeCCCCCHHHCCCCCEEEe-CCccEEEEecCCC
Confidence 344566778899999999999999999999999989884 77999999999999999999999999 4689999988876
Q ss_pred C
Q 011553 173 V 173 (483)
Q Consensus 173 ~ 173 (483)
.
T Consensus 157 ~ 157 (251)
T 3m9b_A 157 A 157 (251)
T ss_dssp C
T ss_pred C
Confidence 4
No 135
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.51 E-value=0.00024 Score=66.71 Aligned_cols=69 Identities=17% Similarity=0.113 Sum_probs=40.4
Q ss_pred eEEEcCCCCchHHHHHHHHHHc---CCceEEEechH---H---HhhhcCCc-----hHHHHHHHHHHhh----cCCeEEE
Q 011553 228 VILYGEPGTGKTLLAKAVANST---SATFLRVVGSE---L---IQKYLGDG-----PKLVRELFRVADD----LSPSIVF 289 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~---l---~~~~~g~~-----~~~i~~~f~~a~~----~~p~Il~ 289 (483)
++++||+|+|||+++..++..+ +...+.+.... . +....|.. .....+++..+.. ..+.+|+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvVi 94 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIG 94 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEE
Confidence 7888999999999988887765 34444442211 0 00111110 0112345555544 3478999
Q ss_pred EcCCccc
Q 011553 290 IDEIDAV 296 (483)
Q Consensus 290 iDEiD~l 296 (483)
|||+..+
T Consensus 95 IDEaQ~l 101 (223)
T 2b8t_A 95 IDEVQFF 101 (223)
T ss_dssp ECSGGGS
T ss_pred EecCccC
Confidence 9999776
No 136
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.50 E-value=0.00026 Score=71.17 Aligned_cols=96 Identities=20% Similarity=0.230 Sum_probs=57.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcC----CceEEEec-hHHH---------hhhcCCchHHHHHHHHHHhhcCCeEEEEcC
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTS----ATFLRVVG-SELI---------QKYLGDGPKLVRELFRVADDLSPSIVFIDE 292 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~----~~~~~v~~-~~l~---------~~~~g~~~~~i~~~f~~a~~~~p~Il~iDE 292 (483)
.++|.||+|+||||+.++++..+. ..++.+.. .++. ....+.....+...+..+-...|.+|++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 489999999999999999988653 23332211 1110 011121122345577777788999999999
Q ss_pred CccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCC
Q 011553 293 IDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (483)
Q Consensus 293 iD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~l 343 (483)
+- +.+....+.++.. .+..+|+|++..+.+
T Consensus 205 p~-------------d~e~~~~~~~~~~--------~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 205 MR-------------DLETIRLALTAAE--------TGHLVFGTLHTTSAA 234 (356)
T ss_dssp CC-------------SHHHHHHHHHHHH--------TTCEEEEEESCSSHH
T ss_pred CC-------------CHHHHHHHHHHHh--------cCCEEEEEEccChHH
Confidence 83 1233333344332 234588888876643
No 137
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.44 E-value=0.00016 Score=71.64 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=23.4
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHH
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~ 248 (483)
|+....-++|+||||+|||+||..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445555999999999999999999875
No 138
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.43 E-value=0.00053 Score=64.27 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=27.3
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEec
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVG 258 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~ 258 (483)
|+....-++|+||||+|||+|+..+|... +...+.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 34555669999999999999988887542 445555543
No 139
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.42 E-value=0.0016 Score=69.21 Aligned_cols=145 Identities=13% Similarity=0.125 Sum_probs=84.7
Q ss_pred cccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHH----HcCCc-----eEEEech---HH
Q 011553 194 GGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVAN----STSAT-----FLRVVGS---EL 261 (483)
Q Consensus 194 ~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~----~l~~~-----~~~v~~~---~l 261 (483)
+|.++.+++|.+.+... +-...+.|.|+|+.|+|||+||+.+++ ..... |+.++.. +.
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 49999999999988431 112245588999999999999999997 33322 3333321 11
Q ss_pred ---Hh---hhcCC-------------chHHHHHHHHHHhhcC-CeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHh
Q 011553 262 ---IQ---KYLGD-------------GPKLVRELFRVADDLS-PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQ 321 (483)
Q Consensus 262 ---~~---~~~g~-------------~~~~i~~~f~~a~~~~-p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ 321 (483)
.. ...+. ....+...+...-... ..+|+||+++.. . .+ .+..
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~-----------~-----~~-~~~~- 262 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE-----------E-----TI-RWAQ- 262 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH-----------H-----HH-HHHH-
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc-----------h-----hh-cccc-
Confidence 11 00111 0111223333332333 789999999764 1 11 1111
Q ss_pred ccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEcCCCCHHHHHHHHHHHHc
Q 011553 322 LDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS 376 (483)
Q Consensus 322 l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~~~P~~~~r~~Il~~~~~ 376 (483)
. .+..||.||....... .. . .....+.++..+.++-.++|..+..
T Consensus 263 ~------~gs~ilvTTR~~~v~~-~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~ 307 (549)
T 2a5y_B 263 E------LRLRCLVTTRDVEISN-AA-S--QTCEFIEVTSLEIDECYDFLEAYGM 307 (549)
T ss_dssp H------TTCEEEEEESBGGGGG-GC-C--SCEEEEECCCCCHHHHHHHHHHTSC
T ss_pred c------CCCEEEEEcCCHHHHH-Hc-C--CCCeEEECCCCCHHHHHHHHHHHhc
Confidence 1 3567888887533211 11 1 1335789999999999999998743
No 140
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.41 E-value=0.0001 Score=67.48 Aligned_cols=40 Identities=30% Similarity=0.337 Sum_probs=31.8
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhh
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 265 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~ 265 (483)
....++|+|||||||||+++++|..++.+|+. ..++....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~--~d~~~~~~ 63 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFID--LDWYIEER 63 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE--HHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEc--chHHHHHH
Confidence 44569999999999999999999999988864 34444333
No 141
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.39 E-value=0.00011 Score=66.16 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=32.3
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcC
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLG 267 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g 267 (483)
++.|+|+||||||||++++.+|..++.+|+.. ..+.....|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~--d~~~~~~~g 45 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS--DKEIEKRTG 45 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH--HHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHHcC
Confidence 45699999999999999999999999888753 444444333
No 142
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.32 E-value=0.00016 Score=65.43 Aligned_cols=33 Identities=36% Similarity=0.579 Sum_probs=28.4
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
..+.-|+|.|+||+||||+++.++..++.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 345568999999999999999999999887765
No 143
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.32 E-value=0.0027 Score=67.26 Aligned_cols=74 Identities=18% Similarity=0.308 Sum_probs=55.6
Q ss_pred eEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC--CCChhhcCCCccceEEEcCCCC
Q 011553 286 SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE--SLDPALLRPGRIDRKIEFPLPD 363 (483)
Q Consensus 286 ~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~--~ld~allr~gR~~~~i~~~~P~ 363 (483)
-+|+|||+..++... ..+....+..+...-. .-+|.+|++|.+|. .++..++. -|...|.|...+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~GR----a~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQKAR----AAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHHCT----TTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHHHh----hCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 589999998885321 2345556666665432 35799999999987 78888877 788889999999
Q ss_pred HHHHHHHHH
Q 011553 364 IKTRRRIFQ 372 (483)
Q Consensus 364 ~~~r~~Il~ 372 (483)
..+...|+.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888887774
No 144
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.31 E-value=0.00028 Score=68.20 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=23.2
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHH
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~ 248 (483)
|+....-++|+||||+|||+|+..++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445556999999999999999999864
No 145
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.30 E-value=0.00014 Score=65.66 Aligned_cols=41 Identities=27% Similarity=0.367 Sum_probs=33.3
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
+..+.-++|.||||+||||+++.++...+...+.+++.++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW 46 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchh
Confidence 34455689999999999999999999877777788776653
No 146
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.28 E-value=0.00071 Score=64.46 Aligned_cols=39 Identities=23% Similarity=0.460 Sum_probs=32.7
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHH
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l 261 (483)
..+..++|.|+|||||||+++.++..++..++.+++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 345569999999999999999999999876777777665
No 147
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.28 E-value=0.00022 Score=65.11 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHHc
Q 011553 227 GVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l 249 (483)
.+.|+||+|+|||||++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 37899999999999999999875
No 148
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.24 E-value=0.00019 Score=63.41 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=27.5
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEe
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVV 257 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~ 257 (483)
-|+|.|||||||||+++.++..++.+|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 3889999999999999999999998886654
No 149
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.23 E-value=0.00013 Score=70.19 Aligned_cols=70 Identities=17% Similarity=0.359 Sum_probs=42.3
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHcCC---ceEEEechHH---H--------hhhcCCchHHHHHHHHHHhhcCCeEEE
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANSTSA---TFLRVVGSEL---I--------QKYLGDGPKLVRELFRVADDLSPSIVF 289 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l~~---~~~~v~~~~l---~--------~~~~g~~~~~i~~~f~~a~~~~p~Il~ 289 (483)
+..-++|+||+|+||||++++++..... --+.+....+ . ...+|.....++..+..+-...|.+|+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ill 103 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 103 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEE
Confidence 3445899999999999999999986421 1122221111 0 001111112345566666666899999
Q ss_pred EcCC
Q 011553 290 IDEI 293 (483)
Q Consensus 290 iDEi 293 (483)
+||.
T Consensus 104 lDEp 107 (261)
T 2eyu_A 104 VGEM 107 (261)
T ss_dssp ESCC
T ss_pred eCCC
Confidence 9998
No 150
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.22 E-value=0.00025 Score=62.99 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=28.6
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
..++|+|||||||||+++.+|..++.+|+ ++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i--d~d~~~ 39 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY--DSDQEI 39 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE--EHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE--eccHHH
Confidence 45999999999999999999999987655 444443
No 151
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.22 E-value=0.0024 Score=59.73 Aligned_cols=120 Identities=23% Similarity=0.276 Sum_probs=65.7
Q ss_pred ceEEEcCCCCchHHHHHHHHHHc---CCceEEEech--------HHHhhhcC----------C--chHHHHHHHHHHhhc
Q 011553 227 GVILYGEPGTGKTLLAKAVANST---SATFLRVVGS--------ELIQKYLG----------D--GPKLVRELFRVADDL 283 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~--------~l~~~~~g----------~--~~~~i~~~f~~a~~~ 283 (483)
.+++.|+||||||+++-.+|..+ |...+.++.. .+...... . .+..+..++. .
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~----~ 83 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK----A 83 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----H
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----c
Confidence 49999999999999998888764 4444433331 22221100 0 1122333332 3
Q ss_pred CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCC------------------CCCCCh
Q 011553 284 SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNR------------------IESLDP 345 (483)
Q Consensus 284 ~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~------------------~~~ld~ 345 (483)
.|.+++|||+-..-.. .+...... +.+..++. ..+-+|.|+|. .+.++.
T Consensus 84 ~pdlvIVDElG~~~~~----~~r~~~~~-qDV~~~l~--------sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd 150 (228)
T 2r8r_A 84 APSLVLVDELAHTNAP----GSRHTKRW-QDIQELLA--------AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPD 150 (228)
T ss_dssp CCSEEEESCTTCBCCT----TCSSSBHH-HHHHHHHH--------TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCH
T ss_pred CCCEEEEeCCCCCCcc----cchhHHHH-HHHHHHHc--------CCCCEEEEccccccccHHHHHHHHcCCCcCCcCcc
Confidence 5889999998654111 11112122 22223332 24557788872 144666
Q ss_pred hhcCCCccceEEEcCCCCHH
Q 011553 346 ALLRPGRIDRKIEFPLPDIK 365 (483)
Q Consensus 346 allr~gR~~~~i~~~~P~~~ 365 (483)
.+++ +.+.+..++.|..+
T Consensus 151 ~~~~--~a~~v~lvD~~p~~ 168 (228)
T 2r8r_A 151 WVLQ--EAFDLVLIDLPPRE 168 (228)
T ss_dssp HHHH--TCSEEEEBCCCHHH
T ss_pred HHHh--hCCeEEEecCCHHH
Confidence 6666 66667777776654
No 152
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.21 E-value=0.00021 Score=63.87 Aligned_cols=34 Identities=35% Similarity=0.559 Sum_probs=28.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
.++|.|+|||||||+++++|..++.+|+. ...+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d--~d~~~ 39 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD--SDFLI 39 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE--HHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc--ccHHH
Confidence 48999999999999999999999987764 44443
No 153
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.19 E-value=0.00029 Score=63.19 Aligned_cols=31 Identities=32% Similarity=0.636 Sum_probs=27.7
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
+..|+|+|+||||||+++++++..++.+++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 4569999999999999999999999987764
No 154
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.19 E-value=0.00039 Score=67.75 Aligned_cols=39 Identities=28% Similarity=0.505 Sum_probs=31.9
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
.+.-++|.|||||||||+++.++..++..++.+++..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 345689999999999999999999986667777765554
No 155
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.16 E-value=0.00019 Score=64.86 Aligned_cols=31 Identities=32% Similarity=0.543 Sum_probs=26.3
Q ss_pred CCceEEEcCCCCchHHHHHHHHHH-cCCceEE
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANS-TSATFLR 255 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~-l~~~~~~ 255 (483)
+..|+|+|+||||||++++.++.. ++.+|+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 345999999999999999999999 6766653
No 156
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.15 E-value=0.00034 Score=70.83 Aligned_cols=77 Identities=17% Similarity=0.324 Sum_probs=46.1
Q ss_pred hhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcC----CceEEEech-HH---------HhhhcCCchHHHHHHHHHHhh
Q 011553 217 YEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTS----ATFLRVVGS-EL---------IQKYLGDGPKLVRELFRVADD 282 (483)
Q Consensus 217 ~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~----~~~~~v~~~-~l---------~~~~~g~~~~~i~~~f~~a~~ 282 (483)
+..+.+.+...++|+||+|+||||++++++.... ..++.+... ++ ....+|.....+...+..+-.
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR 207 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTT
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhh
Confidence 3343344455599999999999999999998643 223222210 00 000011112233455666666
Q ss_pred cCCeEEEEcCC
Q 011553 283 LSPSIVFIDEI 293 (483)
Q Consensus 283 ~~p~Il~iDEi 293 (483)
..|.+|++||+
T Consensus 208 ~~pd~illdE~ 218 (372)
T 2ewv_A 208 EDPDVIFVGEM 218 (372)
T ss_dssp SCCSEEEESCC
T ss_pred hCcCEEEECCC
Confidence 78999999998
No 157
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.14 E-value=0.00031 Score=63.13 Aligned_cols=35 Identities=26% Similarity=0.494 Sum_probs=29.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~ 263 (483)
.|+|+|+||||||++++.++..++.+++. ...+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id--~D~~~~ 38 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD--TDVAIE 38 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE--HHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe--CchHHH
Confidence 48999999999999999999999988764 444433
No 158
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.10 E-value=0.0019 Score=67.86 Aligned_cols=75 Identities=19% Similarity=0.359 Sum_probs=52.1
Q ss_pred Ce-EEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC--CCChhhcCCCccceEEEcCC
Q 011553 285 PS-IVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE--SLDPALLRPGRIDRKIEFPL 361 (483)
Q Consensus 285 p~-Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~--~ld~allr~gR~~~~i~~~~ 361 (483)
|. +|+|||+..+.... ..+....+..+..... ..++.+|++|.++. .++..++. -|...|.|..
T Consensus 297 P~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~gR----a~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV-------GKKVEELIARLAQKAR----AAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV 363 (512)
T ss_dssp CEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHHCG----GGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC
T ss_pred CcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHHhh----hCCcEEEEEecCCccccccHHHHh--hcCCeEEEEc
Confidence 54 89999997774211 1233344444444322 23788999999987 58887877 7888899999
Q ss_pred CCHHHHHHHHH
Q 011553 362 PDIKTRRRIFQ 372 (483)
Q Consensus 362 P~~~~r~~Il~ 372 (483)
.+..+...|+.
T Consensus 364 ~s~~dsr~ilg 374 (512)
T 2ius_A 364 SSKIDSRTILD 374 (512)
T ss_dssp SSHHHHHHHHS
T ss_pred CCHHHHHHhcC
Confidence 99988888875
No 159
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.06 E-value=0.00039 Score=61.56 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=29.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhh
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~ 264 (483)
.++|.|+|||||||+++.+|..++.+|+. ...+...
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id--~D~~~~~ 44 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLD--TDMIISE 44 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEE--HHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE--ChHHHHH
Confidence 49999999999999999999999998865 3444433
No 160
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.06 E-value=0.00032 Score=67.03 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=28.6
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEech
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGS 259 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~~~ 259 (483)
++|.||||||||+||+++|..++..++..+..
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 78999999999999999999999888776553
No 161
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.03 E-value=0.00036 Score=62.38 Aligned_cols=20 Identities=40% Similarity=0.595 Sum_probs=17.4
Q ss_pred CCceEEEcCCCCchHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKA 244 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Lara 244 (483)
+.-+.|+||+|+|||||+++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 34488999999999999994
No 162
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.00 E-value=0.00044 Score=61.24 Aligned_cols=35 Identities=20% Similarity=0.403 Sum_probs=28.8
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~ 263 (483)
.|+|.|+||||||++++.++..++.+++. ...+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id--~d~~~~ 38 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD--TDIFMQ 38 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc--ccHHHH
Confidence 48999999999999999999999987664 444443
No 163
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.99 E-value=0.00045 Score=60.85 Aligned_cols=28 Identities=29% Similarity=0.596 Sum_probs=24.8
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEE
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRV 256 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v 256 (483)
|+|.|||||||||+++.+ ..++.+++.+
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 889999999999999999 8888876653
No 164
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.99 E-value=0.0011 Score=63.85 Aligned_cols=45 Identities=27% Similarity=0.339 Sum_probs=31.4
Q ss_pred CCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 284 SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 284 ~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
.|.+|++||-- ++-+...+..+.+++..+.. ..+..||++|+..+
T Consensus 165 ~p~lLllDEPt----------s~LD~~~~~~i~~~l~~l~~---~~~~tvi~vtHdl~ 209 (266)
T 4g1u_C 165 TPRWLFLDEPT----------SALDLYHQQHTLRLLRQLTR---QEPLAVCCVLHDLN 209 (266)
T ss_dssp CCEEEEECCCC----------SSCCHHHHHHHHHHHHHHHH---HSSEEEEEECSCHH
T ss_pred CCCEEEEeCcc----------ccCCHHHHHHHHHHHHHHHH---cCCCEEEEEEcCHH
Confidence 89999999962 34466667777777766531 24567888988644
No 165
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.99 E-value=0.0016 Score=61.54 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=22.7
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
....-+.|.||+|+|||||+++++...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344558999999999999999999754
No 166
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.99 E-value=0.00056 Score=62.48 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=27.1
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
+.-|+|.|+|||||||+++.++..++.+++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~ 50 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 3458999999999999999999999987654
No 167
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.98 E-value=0.00053 Score=62.72 Aligned_cols=31 Identities=26% Similarity=0.629 Sum_probs=27.2
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
+.-|+|.|+||+||||+++.++..++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 3459999999999999999999999877664
No 168
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.97 E-value=0.00057 Score=68.78 Aligned_cols=52 Identities=23% Similarity=0.415 Sum_probs=34.8
Q ss_pred HHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 277 FRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 277 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
+..|-...|.+|++||-- ++-+...+..++++|..+.. ..++.||++|+..+
T Consensus 174 IArAL~~~P~lLLlDEPT----------s~LD~~~~~~i~~lL~~l~~---~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 174 IARALASNPKVLLCDQAT----------SALDPATTRSILELLKDINR---RLGLTILLITHEMD 225 (366)
T ss_dssp HHHHTTTCCSEEEEESTT----------TTSCHHHHHHHHHHHHHHHH---HSCCEEEEEESCHH
T ss_pred HHHHHhcCCCEEEEECCC----------ccCCHHHHHHHHHHHHHHHH---hCCCEEEEEecCHH
Confidence 334444578899999963 44466677778888876531 23567888888644
No 169
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.96 E-value=0.00049 Score=61.97 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=28.6
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
.-|+|.|+|||||||+++.++..++.+++ +..++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~ 38 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGELL 38 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHH
Confidence 45899999999999999999999987664 444444
No 170
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.96 E-value=0.00058 Score=61.40 Aligned_cols=37 Identities=24% Similarity=0.475 Sum_probs=29.3
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~ 263 (483)
+.-|+|.|+|||||||+++.++..++.+++. ..++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~--~d~~~~ 42 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLS--AGDLLR 42 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEee--HHHHHH
Confidence 4458999999999999999999999866554 444443
No 171
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.95 E-value=0.00058 Score=61.74 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=29.6
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~ 263 (483)
+.-|+|.|+|||||||+++.++..++.+++. ...+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~--~d~~~~ 45 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS--TGDLLR 45 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc--HHHHHH
Confidence 3459999999999999999999999877654 344443
No 172
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.94 E-value=0.00049 Score=61.83 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=27.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
.++|.|+|||||||+++.+++.++.+++ +..++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i--~~d~~~ 39 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKL--STGDIL 39 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE--CHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEe--cHHHHH
Confidence 4899999999999999999999986654 444443
No 173
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.94 E-value=0.00059 Score=63.31 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=27.0
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
+.-|+|.|+|||||||+++.+|..++.+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 3458999999999999999999999976654
No 174
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.93 E-value=0.0026 Score=59.60 Aligned_cols=37 Identities=30% Similarity=0.320 Sum_probs=26.7
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHH----cCCceEEEe
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANS----TSATFLRVV 257 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~----l~~~~~~v~ 257 (483)
|+.+..-++|+|+||+|||++|..+|.. .+.+.+.++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 3455566999999999999999877643 245555554
No 175
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.93 E-value=0.0016 Score=67.60 Aligned_cols=37 Identities=22% Similarity=0.339 Sum_probs=28.2
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc----CCceEEEe
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST----SATFLRVV 257 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l----~~~~~~v~ 257 (483)
|+.+..-++|.|+||+|||+|+..+|... +.+.+.++
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45555669999999999999999988743 44566554
No 176
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.93 E-value=0.0004 Score=70.35 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=21.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l 249 (483)
..-+.|.||+|||||||.++||...
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3448899999999999999999744
No 177
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.92 E-value=0.00064 Score=62.20 Aligned_cols=35 Identities=31% Similarity=0.553 Sum_probs=27.9
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l 261 (483)
+.-++|.||+|+||||++++++..++..+ +++..+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 45589999999999999999999997654 444443
No 178
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.91 E-value=0.00046 Score=61.76 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=22.7
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceE
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFL 254 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~ 254 (483)
.-|+|.|+|||||||+++.++..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45899999999999999999999998876
No 179
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.91 E-value=0.00042 Score=61.67 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=25.6
Q ss_pred CceEEEcCCCCchHHHHHHHHH-HcCCceEEEechHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVAN-STSATFLRVVGSEL 261 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~-~l~~~~~~v~~~~l 261 (483)
.-|+|.|+|||||||+++.++. .++ +..++...+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~d~~ 37 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDY 37 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCC--cEEecHHHH
Confidence 4589999999999999999998 454 444444333
No 180
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.90 E-value=0.00064 Score=60.53 Aligned_cols=30 Identities=37% Similarity=0.544 Sum_probs=25.6
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
..++|+||||+||||+++.++..++..++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 348999999999999999999998765543
No 181
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.89 E-value=0.00041 Score=67.23 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=34.3
Q ss_pred HHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCC
Q 011553 278 RVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (483)
Q Consensus 278 ~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~l 343 (483)
..|-...|.+|++||-- ++-+......+.+++..+.. ..+..||++|+..+.+
T Consensus 155 AraL~~~P~lLlLDEPt----------s~LD~~~~~~i~~~l~~l~~---~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 155 AGVLVMEPKVLILDEPT----------AGLDPMGVSEIMKLLVEMQK---ELGITIIIATHDIDIV 207 (275)
T ss_dssp HHHHTTCCSEEEEECTT----------TTCCHHHHHHHHHHHHHHHH---HHCCEEEEEESCCSSG
T ss_pred HHHHHcCCCEEEEECcc----------ccCCHHHHHHHHHHHHHHHh---hCCCEEEEEecCHHHH
Confidence 33344568899999963 33466667777777766521 1146788888876644
No 182
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.89 E-value=0.00064 Score=63.47 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=27.1
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
+.-|+|.|+|||||||+++.+|..++.+++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 4559999999999999999999999876654
No 183
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.88 E-value=0.00065 Score=63.43 Aligned_cols=40 Identities=18% Similarity=0.376 Sum_probs=31.8
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhh
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~ 264 (483)
..++-|+|.||||+||+|.|+.+|+.++.+ .++..+++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdllR~ 66 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLLRA 66 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHHHH
Confidence 445668999999999999999999999765 4556666543
No 184
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.88 E-value=0.00065 Score=62.76 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=25.8
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEE
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRV 256 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v 256 (483)
|+|.|||||||||+++.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999998776543
No 185
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.88 E-value=0.00069 Score=59.72 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=28.8
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhh
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 264 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~ 264 (483)
|+|.|+|||||||+++.++..++.+++. ..++...
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~--~d~~~~~ 37 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYD--VDEEVQK 37 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEE--HHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE--CcHHHHH
Confidence 8899999999999999999999987764 4444433
No 186
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.86 E-value=0.00068 Score=62.54 Aligned_cols=29 Identities=24% Similarity=0.474 Sum_probs=25.8
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEE
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRV 256 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v 256 (483)
|+|.|||||||||+++.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999998776543
No 187
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.86 E-value=0.0007 Score=61.35 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=28.7
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
+.-|+|.|+|||||||+++.++..++.+++ +...+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i--~~d~~~ 47 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHL--STGELL 47 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE--cHHHHH
Confidence 345999999999999999999999986654 444443
No 188
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.85 E-value=0.00095 Score=59.72 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=31.1
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSEL 261 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l 261 (483)
+.-+.|.|++||||||+++.++..+ +.+++.+++..+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 3448899999999999999999987 888888875544
No 189
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.85 E-value=0.0006 Score=61.29 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.9
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcC
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
.-|+|.|+|||||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3489999999999999999999887
No 190
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.85 E-value=0.0015 Score=77.34 Aligned_cols=127 Identities=19% Similarity=0.232 Sum_probs=77.2
Q ss_pred CChhhhhhhCC-CCCCc--eEEEcCCCCchHHHHHHHHHH---cCCceEEEechH----------------HHhhhcCCc
Q 011553 212 THPELYEDIGI-KPPKG--VILYGEPGTGKTLLAKAVANS---TSATFLRVVGSE----------------LIQKYLGDG 269 (483)
Q Consensus 212 ~~~~~~~~~g~-~~~~g--vLL~GppGtGKT~Laraia~~---l~~~~~~v~~~~----------------l~~~~~g~~ 269 (483)
..+.+-..+|. -.|+| |.+|||+|||||+||-.++.+ .+.....++... +.-.++...
T Consensus 1415 G~~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~ 1494 (1706)
T 3cmw_A 1415 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 1494 (1706)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSH
T ss_pred CCHHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcH
Confidence 33445555664 44555 999999999999998776643 355555565431 111345556
Q ss_pred hHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCC--CChHHH-HHHHHHHHHhccCCcCCCCeEEEEEeC
Q 011553 270 PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHS--GGEREI-QRTMLELLNQLDGFDSRGDVKVILATN 338 (483)
Q Consensus 270 ~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~--~~~~~~-~~~l~~lL~~l~~~~~~~~v~vI~ttn 338 (483)
+..+..+...++..+|++|+||-+.+|.++...... +.+..+ .+.+.+.|..+.+.-...++.+|++..
T Consensus 1495 e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~ 1566 (1706)
T 3cmw_A 1495 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1566 (1706)
T ss_dssp HHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcEEEEeec
Confidence 777777888888899999999999999766422101 011111 233334444444433445677777743
No 191
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.83 E-value=0.0022 Score=63.75 Aligned_cols=70 Identities=20% Similarity=0.332 Sum_probs=46.1
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCC--ceEEEechHHHh-----h---hcCCchHHHHHHHHHHhhcCCeEEEEcCCc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSELIQ-----K---YLGDGPKLVRELFRVADDLSPSIVFIDEID 294 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~~~~l~~-----~---~~g~~~~~i~~~f~~a~~~~p~Il~iDEiD 294 (483)
...++|.||+|+|||||+++++..... ..+.+....... . ++.......+..+..|-...|.+|++||.-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 456999999999999999999987643 344444321100 0 110012234556677777889999999973
No 192
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.81 E-value=0.00091 Score=62.75 Aligned_cols=30 Identities=30% Similarity=0.438 Sum_probs=26.7
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
..|+|.|+|||||||+++.+|..++.+++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 459999999999999999999999977654
No 193
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.80 E-value=0.00068 Score=63.00 Aligned_cols=31 Identities=19% Similarity=0.401 Sum_probs=26.7
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
+.-|+|.|||||||||+++.+|..++..++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4459999999999999999999999875543
No 194
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.80 E-value=0.0011 Score=60.58 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=29.0
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHH
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSEL 261 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l 261 (483)
.+.-+.|.||+||||||++++++..+ |...+.+++..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 34558899999999999999999987 444445555444
No 195
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.79 E-value=0.00082 Score=62.21 Aligned_cols=33 Identities=24% Similarity=0.522 Sum_probs=27.7
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
++|.||||+||+|.|+.+|+.++.++ ++..+++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 78999999999999999999998765 4555554
No 196
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.77 E-value=0.0014 Score=70.07 Aligned_cols=71 Identities=24% Similarity=0.321 Sum_probs=42.0
Q ss_pred CceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHHh----hhcCCchHHHHHHHHHHh---------hcCCeEEE
Q 011553 226 KGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELIQ----KYLGDGPKLVRELFRVAD---------DLSPSIVF 289 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~~----~~~g~~~~~i~~~f~~a~---------~~~p~Il~ 289 (483)
..++|+||||||||+++.+++..+ +..++.+..+.-.. ...+.....++.++.... .....+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 458999999999999999998754 44555443332211 112222223343332111 11346999
Q ss_pred EcCCccc
Q 011553 290 IDEIDAV 296 (483)
Q Consensus 290 iDEiD~l 296 (483)
|||+..+
T Consensus 285 IDEasml 291 (574)
T 3e1s_A 285 VDEVSMM 291 (574)
T ss_dssp ECCGGGC
T ss_pred EcCccCC
Confidence 9999776
No 197
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.77 E-value=0.00093 Score=60.01 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=26.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCC---ceEEEechHH
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSA---TFLRVVGSEL 261 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~---~~~~v~~~~l 261 (483)
|+|.|+|||||||+++.+++.++. ++..++..++
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 889999999999999999998762 3555554444
No 198
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.77 E-value=0.00079 Score=62.46 Aligned_cols=36 Identities=22% Similarity=0.482 Sum_probs=28.9
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~ 263 (483)
..|+|.|+|||||||+++.+|..++.+++. ..+++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~li~ 41 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLS--TGDMLR 41 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEe--hhHHHH
Confidence 348999999999999999999999877654 344443
No 199
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.77 E-value=0.00091 Score=63.37 Aligned_cols=38 Identities=26% Similarity=0.450 Sum_probs=30.2
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~ 263 (483)
.+.-|+|.|||||||||+|+.+++.++.+++ +..++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i--s~~~~~r 65 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL--STGDLLR 65 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEE--ecHHHHH
Confidence 4556999999999999999999999986655 4445443
No 200
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.76 E-value=0.00097 Score=60.86 Aligned_cols=36 Identities=22% Similarity=0.438 Sum_probs=28.8
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~ 263 (483)
.-|+|.|+|||||||+++.+++.++.+++. ...+..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~--~d~~~~ 51 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLS--AGDLLR 51 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEE--HHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEe--HHHHHH
Confidence 448999999999999999999999876554 444443
No 201
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.76 E-value=0.003 Score=70.88 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=20.0
Q ss_pred CCceEEEcCCCCchHHHHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~ 247 (483)
..-++|+||+|+||||+.+.++.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 34489999999999999999874
No 202
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.75 E-value=0.0013 Score=62.98 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=31.3
Q ss_pred CceEEEcCCCCchHHHHHHHHHH---cCCceEEEechHHHh
Q 011553 226 KGVILYGEPGTGKTLLAKAVANS---TSATFLRVVGSELIQ 263 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~---l~~~~~~v~~~~l~~ 263 (483)
.-|+|.|+|||||||+++.++.. .+.+++.++...+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~ 45 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE 45 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence 34899999999999999999997 777877667666543
No 203
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.72 E-value=0.001 Score=62.88 Aligned_cols=30 Identities=23% Similarity=0.456 Sum_probs=26.3
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceE
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFL 254 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~ 254 (483)
+.-++|.||||+||||+++.++..++...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 456999999999999999999999987654
No 204
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.70 E-value=0.001 Score=65.83 Aligned_cols=35 Identities=31% Similarity=0.496 Sum_probs=30.4
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEech
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGS 259 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~ 259 (483)
+..++|+||+|||||+|++.+|..++..++.++.-
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 34589999999999999999999999888887543
No 205
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.70 E-value=0.0039 Score=58.72 Aligned_cols=33 Identities=33% Similarity=0.266 Sum_probs=27.8
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEech
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGS 259 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~ 259 (483)
.++++||+|+|||.++-+++...+...+.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 499999999999999999998887766666544
No 206
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.68 E-value=0.0053 Score=63.25 Aligned_cols=72 Identities=19% Similarity=0.192 Sum_probs=46.9
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHH----------Hhh---------hcC-CchHHHHHHHHHHh
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSEL----------IQK---------YLG-DGPKLVRELFRVAD 281 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l----------~~~---------~~g-~~~~~i~~~f~~a~ 281 (483)
|.-++++|++|+||||++..+|..+ +.....+++..+ ... ..+ .....+...+..+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 5669999999999999999998765 444544443211 000 011 12334556677777
Q ss_pred hcCCeEEEEcCCccc
Q 011553 282 DLSPSIVFIDEIDAV 296 (483)
Q Consensus 282 ~~~p~Il~iDEiD~l 296 (483)
...+.+|+||....+
T Consensus 180 ~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRH 194 (443)
T ss_dssp HTTCSEEEEECCCCS
T ss_pred hCCCCEEEEECCCcc
Confidence 766789999988544
No 207
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.67 E-value=0.017 Score=56.62 Aligned_cols=73 Identities=21% Similarity=0.292 Sum_probs=44.1
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHHH-------hhh------------cCCch-HHHHHHHHH
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSELI-------QKY------------LGDGP-KLVRELFRV 279 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l~-------~~~------------~g~~~-~~i~~~f~~ 279 (483)
..+.-++|+||+|+||||++..+|..+ +.....+++..+. ..| .+..+ ..+...+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 345568999999999999999999765 3344444332110 001 01111 222334555
Q ss_pred HhhcCCeEEEEcCCcc
Q 011553 280 ADDLSPSIVFIDEIDA 295 (483)
Q Consensus 280 a~~~~p~Il~iDEiD~ 295 (483)
+....|.+|+||+.-.
T Consensus 182 a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 182 ALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCc
Confidence 5566788999998753
No 208
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.66 E-value=0.0011 Score=61.13 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=25.8
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEE
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRV 256 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v 256 (483)
|+|.|+|||||||+++.++..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999998776543
No 209
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.66 E-value=0.0011 Score=61.41 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=28.4
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
..+.|.||+||||||+++.++..++.+++ +..++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~--d~g~i~ 40 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL--DSGAIY 40 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc--cCccee
Confidence 34899999999999999999999987665 444443
No 210
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.66 E-value=0.0011 Score=66.48 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l 249 (483)
..-+.|.||+|||||||.++||...
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3448899999999999999999743
No 211
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.65 E-value=0.0011 Score=60.17 Aligned_cols=28 Identities=14% Similarity=0.515 Sum_probs=25.6
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
|.|.|++||||||+++.+++.++..++.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 7899999999999999999999987654
No 212
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.65 E-value=0.0022 Score=58.61 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=26.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
-+.|.||+||||||+++.++. +|.+++ +...+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~~ 36 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVVA 36 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc--chHHHH
Confidence 378999999999999999998 777765 455443
No 213
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.64 E-value=0.0015 Score=58.82 Aligned_cols=30 Identities=23% Similarity=0.152 Sum_probs=26.8
Q ss_pred eEEEcCCCCchHHHHHHHHHHc---CCceEEEe
Q 011553 228 VILYGEPGTGKTLLAKAVANST---SATFLRVV 257 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l---~~~~~~v~ 257 (483)
|.|.|+|||||||+++.+++.+ +.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999988 88877664
No 214
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.62 E-value=0.0043 Score=64.13 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=28.6
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc----CCceEEEec
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST----SATFLRVVG 258 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l----~~~~~~v~~ 258 (483)
|+.+..-++|+|+||+|||+|+..+|... +.+.+.++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 45555669999999999999999888643 446666654
No 215
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.61 E-value=0.0031 Score=57.45 Aligned_cols=49 Identities=24% Similarity=0.408 Sum_probs=32.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhcCCchHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFR 278 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~ 278 (483)
.|.|+|++||||||+++.++. ++.+++. ...+...........+..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~--~d~~~~~~~~~~~~~~~~i~~ 51 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD--ADKLIHSFYRKGHPVYEEVVK 51 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE--HHHHHHGGGSSSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE--ccHHHHHHhcCCHHHHHHHHH
Confidence 388999999999999999999 8766554 455544333222233444444
No 216
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.60 E-value=0.012 Score=53.85 Aligned_cols=116 Identities=19% Similarity=0.206 Sum_probs=65.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHHc---CCceEEE---ec------hHHHhhhc-----------CCc------hHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANST---SATFLRV---VG------SELIQKYL-----------GDG------PKLVRELF 277 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l---~~~~~~v---~~------~~l~~~~~-----------g~~------~~~i~~~f 277 (483)
.|++|+++|.|||++|-++|-+. |..+..+ .+ ..++.... -.. .......+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 39999999999999999888653 4444444 22 12333320 011 12334445
Q ss_pred HHHhh----cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCcc
Q 011553 278 RVADD----LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRI 353 (483)
Q Consensus 278 ~~a~~----~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~ 353 (483)
..+.. ...++|+|||+-....-..- + ...+++++.. ...+.-||+|+|. .++.|+. .-
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l-----~---~~ev~~~l~~-----Rp~~~~vIlTGr~---ap~~l~e--~A 171 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYL-----P---LEEVISALNA-----RPGHQTVIITGRG---CHRDILD--LA 171 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSS-----C---HHHHHHHHHT-----SCTTCEEEEECSS---CCHHHHH--HC
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCC-----C---HHHHHHHHHh-----CcCCCEEEEECCC---CcHHHHH--hC
Confidence 54443 34689999999543211100 1 1335566652 2346789999986 3567766 66
Q ss_pred ceEEEcC
Q 011553 354 DRKIEFP 360 (483)
Q Consensus 354 ~~~i~~~ 360 (483)
|.+-++.
T Consensus 172 D~VTem~ 178 (196)
T 1g5t_A 172 DTVSELR 178 (196)
T ss_dssp SEEEECC
T ss_pred cceeeec
Confidence 6555553
No 217
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.59 E-value=0.023 Score=56.53 Aligned_cols=37 Identities=24% Similarity=0.222 Sum_probs=27.8
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEe
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVV 257 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~ 257 (483)
|+.+..-++|.|+||+|||+|+..+|... +.++..++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45555559999999999999999998753 45555553
No 218
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.57 E-value=0.0065 Score=68.64 Aligned_cols=43 Identities=28% Similarity=0.314 Sum_probs=35.1
Q ss_pred cccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHH
Q 011553 194 GGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 194 ~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~ 248 (483)
+|.+..+.+|.+.+... ...+-+.|+|+.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 79999999999887531 12345899999999999999999864
No 219
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.57 E-value=0.014 Score=60.03 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=44.6
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHH----------HhhhcC---------C-chHHHHHHHHHHh
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSEL----------IQKYLG---------D-GPKLVRELFRVAD 281 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l----------~~~~~g---------~-~~~~i~~~f~~a~ 281 (483)
+.-++|+||+|+||||++..+|..+ +.....+++..+ .....| . ........+..+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4558899999999999999998755 444444443210 001111 1 1122345566666
Q ss_pred hcCCeEEEEcCCccc
Q 011553 282 DLSPSIVFIDEIDAV 296 (483)
Q Consensus 282 ~~~p~Il~iDEiD~l 296 (483)
...+.+|+||....+
T Consensus 177 ~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTCSEEEEEECCCS
T ss_pred hcCCCEEEEECCCCc
Confidence 567889999988554
No 220
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.56 E-value=0.0014 Score=61.03 Aligned_cols=34 Identities=18% Similarity=0.436 Sum_probs=27.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~ 263 (483)
|+|.|+|||||||+++.++..++.++ ++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~--i~~dd~~r 36 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAH--IESGGIFR 36 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEE--EEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeE--EchHHHHH
Confidence 78999999999999999999998654 44445443
No 221
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.54 E-value=0.0012 Score=62.94 Aligned_cols=31 Identities=35% Similarity=0.494 Sum_probs=27.7
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
...|.|.|++|+||||+++.+|..++.+|+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 3459999999999999999999999987765
No 222
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.51 E-value=0.0076 Score=59.14 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=22.9
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
.+..-+.|+||+|+|||||+++++...
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 445559999999999999999999754
No 223
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.51 E-value=0.0018 Score=61.06 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=28.6
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l 261 (483)
+..+.|.||||||||++++.++..++.+++ +...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~--d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYL--DTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc--cCCcH
Confidence 345899999999999999999999987664 44444
No 224
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.49 E-value=0.013 Score=61.92 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=64.8
Q ss_pred CCCCCceEEEcCCCCchHHHHHHH--HHHc--CCceEEEechHHH----h--hhcCCc----------------------
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAV--ANST--SATFLRVVGSELI----Q--KYLGDG---------------------- 269 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Larai--a~~l--~~~~~~v~~~~l~----~--~~~g~~---------------------- 269 (483)
+.....++|.||+|||||+|++.+ +... +..-+++++.+.. . ..+|-.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~ 115 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQ 115 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCC
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchh
Confidence 344556999999999999999994 4432 3344455442210 0 000100
Q ss_pred --------hHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 270 --------PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 270 --------~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
...............|.+|+|||+-.+.+. .+.+......+..++..+.. .++.+|++|+..+
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-----~~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~~ 186 (525)
T 1tf7_A 116 EVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-----YDASSVVRRELFRLVARLKQ----IGATTVMTTERIE 186 (525)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-----TCCHHHHHHHHHHHHHHHHH----HTCEEEEEEECSS
T ss_pred hhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-----cCCHHHHHHHHHHHHHHHHH----CCCEEEEEecCCC
Confidence 111223333334456789999999765322 22344556667777776532 2567888888766
Q ss_pred CC
Q 011553 342 SL 343 (483)
Q Consensus 342 ~l 343 (483)
.+
T Consensus 187 ~~ 188 (525)
T 1tf7_A 187 EY 188 (525)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 225
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.49 E-value=0.002 Score=58.59 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=27.6
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc-CCceEEEe
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST-SATFLRVV 257 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l-~~~~~~v~ 257 (483)
+.-|.|.|++||||||+++.++..+ +.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 3458999999999999999999998 46676654
No 226
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.48 E-value=0.0057 Score=61.42 Aligned_cols=26 Identities=31% Similarity=0.252 Sum_probs=21.8
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
...-+.|.||+|||||||.++||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 33448899999999999999999743
No 227
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.48 E-value=0.0019 Score=58.92 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=26.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEE
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRV 256 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v 256 (483)
.+.|.|++|||||++++.+|..++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 488999999999999999999999887653
No 228
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.47 E-value=0.0016 Score=65.03 Aligned_cols=53 Identities=17% Similarity=0.308 Sum_probs=37.6
Q ss_pred cccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 194 GGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 194 ~Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
+.++...+.+...+...+.. .....++|+||||+|||++++++|..++.+|+.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~---------g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED---------NYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT---------CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc---------CCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 35566666666666542221 112359999999999999999999999887744
No 229
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.46 E-value=0.0022 Score=57.91 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=25.4
Q ss_pred eEEEcCCCCchHHHHHHHHHHc---CCceEEE
Q 011553 228 VILYGEPGTGKTLLAKAVANST---SATFLRV 256 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l---~~~~~~v 256 (483)
|.|.|++||||||+++.+++.+ +.+++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 7899999999999999999998 8887755
No 230
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.46 E-value=0.0097 Score=62.44 Aligned_cols=38 Identities=8% Similarity=0.005 Sum_probs=29.0
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc----CCceEEEec
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST----SATFLRVVG 258 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l----~~~~~~v~~ 258 (483)
|+.+..-++|.|+||+|||+|+..+|... +.+++.++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 45556669999999999999999998754 345666653
No 231
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.46 E-value=0.0025 Score=58.41 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=24.6
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcC
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
..+.-++|+||||+||||+++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4456699999999999999999999885
No 232
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.46 E-value=0.007 Score=63.94 Aligned_cols=110 Identities=15% Similarity=0.247 Sum_probs=63.9
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechH----HHhhh--cC----------------------Cc
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSE----LIQKY--LG----------------------DG 269 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~----l~~~~--~g----------------------~~ 269 (483)
++.....++|.||||+|||+|++.++... +...+.+...+ +.... .| ..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 34555669999999999999999999754 33444443221 11100 00 11
Q ss_pred hHHHHHHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCC
Q 011553 270 PKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRI 340 (483)
Q Consensus 270 ~~~i~~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~ 340 (483)
....+.++..+....|.+|+||=+..+... .. ..+....+..++..+.. .++.+|++++..
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~-----~~-~~~~~~~i~~ll~~l~~----~g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARG-----VS-NNAFRQFVIGVTGYAKQ----EEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSS-----SC-HHHHHHHHHHHHHHHHH----TTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhh-----CC-hHHHHHHHHHHHHHHHh----CCCEEEEEECcc
Confidence 234455666677778999999955444221 11 12245555666665432 256677777654
No 233
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.45 E-value=0.008 Score=59.14 Aligned_cols=37 Identities=24% Similarity=0.228 Sum_probs=27.9
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEe
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVV 257 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~ 257 (483)
|+.+..-++|.|+||+|||+|+..+|... +.+.+.++
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 45556669999999999999999998653 34555554
No 234
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.33 E-value=0.0077 Score=67.78 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=19.1
Q ss_pred CceEEEcCCCCchHHHHHHHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~ 247 (483)
.-++|+||+|+||||+.|.++-
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999999999953
No 235
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.31 E-value=0.0011 Score=60.60 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=24.6
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCce
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATF 253 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~ 253 (483)
+.-|+|.|+|||||||+++.++..++.++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 44589999999999999999999876543
No 236
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.30 E-value=0.003 Score=60.10 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=28.5
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
..|.|.||+||||||+++.+|..++..++ +...+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~--d~g~i~ 62 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL--DSGAIY 62 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE--EHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC--CCCcee
Confidence 34889999999999999999999997665 444443
No 237
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.30 E-value=0.0027 Score=57.60 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=27.9
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
+..|.|.|++||||||+++.++.. +.+++ +...+.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~~ 42 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDALA 42 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHHH
Confidence 345899999999999999999998 76665 444444
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.28 E-value=0.0026 Score=57.04 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=22.2
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcC
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
.-+.|.||+|+|||||++.++....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998764
No 239
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.28 E-value=0.0027 Score=57.95 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=27.7
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
|.|+|++||||||+++.++..+|.+++. +..+.
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~~vid--~D~~~ 47 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGAHVVN--VDRIG 47 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE--HHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEEEE--CcHHH
Confidence 8899999999999999999998877654 44443
No 240
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.27 E-value=0.0013 Score=60.21 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.6
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCC
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSA 251 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~ 251 (483)
+.-|+|.|+|||||||+++.++..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455999999999999999999998654
No 241
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.24 E-value=0.0022 Score=58.45 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=24.0
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCc
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSAT 252 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~ 252 (483)
.-|+|.|+|||||||+++.++..++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 348899999999999999999998763
No 242
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.18 E-value=0.0028 Score=57.65 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.9
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
.+.-+.|.||+|+||||+++.++..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34558999999999999999999876
No 243
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.15 E-value=0.0027 Score=62.20 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=29.1
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEec
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~ 258 (483)
+.-++|.||+|||||+|+..+|..++..++..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 4458899999999999999999999877776654
No 244
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.14 E-value=0.0035 Score=56.37 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=25.6
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEechHH
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 261 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l 261 (483)
++|.||+|+||||+++.++...+. .+.+++..+
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 789999999999999999986543 244555544
No 245
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.14 E-value=0.0022 Score=63.70 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=29.6
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEEEech
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGS 259 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~ 259 (483)
+-|+|.||+|||||+|+..+|+.++..++..+.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 3589999999999999999999999888776554
No 246
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.11 E-value=0.017 Score=62.11 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=23.4
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
+++...+.|.||+|+|||||++.++...
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3445559999999999999999999754
No 247
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.08 E-value=0.0059 Score=54.77 Aligned_cols=37 Identities=30% Similarity=0.259 Sum_probs=28.0
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSEL 261 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l 261 (483)
+.-++|.|+||+||||+++.++..++ ..+..+++..+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 44588999999999999999998774 34555554444
No 248
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.08 E-value=0.009 Score=70.05 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=23.5
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcC
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
++..-+.|+||+|+|||||++++.....
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 4445599999999999999999998654
No 249
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.08 E-value=0.0041 Score=57.22 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=30.3
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHcC----CceEEEechHHH
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANSTS----ATFLRVVGSELI 262 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l~----~~~~~v~~~~l~ 262 (483)
.+.-++|.|++|+||||+++.++..++ .+++.+++..+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 344588999999999999999998764 457777755543
No 250
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.08 E-value=0.0045 Score=57.04 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=26.6
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
..+.|+|++|||||++++.++..++.+++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 358999999999999999999999977654
No 251
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.07 E-value=0.0042 Score=57.27 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=26.8
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
.-|.|.|++||||||+++.++. ++.+++ +...+.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~i--d~D~~~ 38 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVI--DADIIA 38 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEE--EHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEE--EccHHH
Confidence 3588999999999999999998 776654 444443
No 252
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.07 E-value=0.0046 Score=57.97 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=29.6
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
.+..+.|.|++|||||++++.++..++.+++. ...+.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d--~d~~~ 51 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD--TGAMY 51 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE--HHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec--CCCee
Confidence 34458999999999999999999999977654 44443
No 253
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.07 E-value=0.0041 Score=56.46 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=23.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCce
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATF 253 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~ 253 (483)
-|+|+||+|+|||+|++.+.......|
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 489999999999999999998865443
No 254
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.07 E-value=0.0041 Score=57.22 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.2
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCC
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSA 251 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~ 251 (483)
+.-+.|.||+|+|||||++.++..+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 445889999999999999999998753
No 255
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.06 E-value=0.012 Score=53.54 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=25.8
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc---CCceEEEe
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVV 257 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~ 257 (483)
+.-+.|.|++|+||||+++.++..+ +..++.++
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 3448899999999999999999875 44555443
No 256
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.05 E-value=0.0056 Score=56.17 Aligned_cols=26 Identities=38% Similarity=0.581 Sum_probs=22.7
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcC
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
+.-+.|.||+|+|||||+++++..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34488999999999999999999775
No 257
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.05 E-value=0.0051 Score=58.33 Aligned_cols=38 Identities=11% Similarity=0.138 Sum_probs=30.1
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCce--------EEEechHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATF--------LRVVGSELI 262 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~--------~~v~~~~l~ 262 (483)
+.-|.|.|++||||||+|+.++..++.++ +.++..++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 34589999999999999999999998763 345665553
No 258
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.02 E-value=0.048 Score=49.66 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=24.5
Q ss_pred eEEEcCCCCchH-HHHHHHHHHc--CCceEEEec
Q 011553 228 VILYGEPGTGKT-LLAKAVANST--SATFLRVVG 258 (483)
Q Consensus 228 vLL~GppGtGKT-~Laraia~~l--~~~~~~v~~ 258 (483)
.++|||.|+||| .|.+++.+.. +...+.+..
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 889999999999 8999998754 456666653
No 259
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.01 E-value=0.0031 Score=57.70 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=24.4
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc-CCceE
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST-SATFL 254 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l-~~~~~ 254 (483)
+.-+.|.|++|+||||+++.++..+ +..++
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 3448899999999999999999977 44443
No 260
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.00 E-value=0.011 Score=63.38 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=22.8
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
++..-+.|+||+|+|||||+++++...
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 444558999999999999999999754
No 261
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.98 E-value=0.0043 Score=56.34 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcC
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
+.-+.|.||+|+|||||++.++....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34488999999999999999999864
No 262
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.95 E-value=0.019 Score=61.34 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=22.7
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
++..-+.|.||+|+|||||++.++...
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444558999999999999999999754
No 263
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.94 E-value=0.0036 Score=62.24 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=27.7
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEEEec
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~ 258 (483)
.-|+|.||+|||||+||+.+|..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 358899999999999999999999866655443
No 264
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.92 E-value=0.014 Score=64.66 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=36.4
Q ss_pred cCCCCCcccccccHHHHHHHHHHHhcCCCC--hhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHH
Q 011553 184 KAPLESYADIGGLDAQIQEIKEAVELPLTH--PELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 184 ~~~~~~~~di~Gl~~~~~~l~e~i~~pl~~--~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~ 248 (483)
..+..+|.++.--+...+.+.+.-..|... ..+... +.....+++.||+|+|||+++..++..
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~--l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKL--YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHH--HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344556777654444555555544444221 122222 122445999999999999977776543
No 265
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.92 E-value=0.0039 Score=61.23 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=27.5
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEech
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGS 259 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~ 259 (483)
-++|.||+|||||+|+..+|..++..++..+.-
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 478999999999999999999988766655443
No 266
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.91 E-value=0.038 Score=57.03 Aligned_cols=38 Identities=24% Similarity=0.183 Sum_probs=28.5
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEec
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVG 258 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~ 258 (483)
|+.+..-++|.|+||+|||+++-.+|... +.+.+.++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 45555569999999999999999888654 456665543
No 267
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.91 E-value=0.0044 Score=55.86 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.0
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcC
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
+-+.|.||+|+|||||++.++....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999998764
No 268
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.89 E-value=0.015 Score=59.62 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=39.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCC---ceEEEechHHHhh-------hcCC-chHHHHHHHHHHhhcCCeEEEEcCC
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSA---TFLRVVGSELIQK-------YLGD-GPKLVRELFRVADDLSPSIVFIDEI 293 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~---~~~~v~~~~l~~~-------~~g~-~~~~i~~~f~~a~~~~p~Il~iDEi 293 (483)
-++|+||+|+||||+.++++..+.. .++.+ ...+-.. .+.. ........+..+-...|.++++.|+
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~-ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNSSERNILTV-EDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE-ESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe-cccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 3889999999999999999998753 23322 1111000 0000 0011233444455567899999986
No 269
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.89 E-value=0.0043 Score=56.70 Aligned_cols=26 Identities=38% Similarity=0.627 Sum_probs=22.4
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcC
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
++-+.|+||+|+|||||++.++....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45589999999999999999998764
No 270
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.89 E-value=0.0052 Score=54.25 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=23.3
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
.+..-+.|.||.|+|||||+++++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344458899999999999999999987
No 271
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.88 E-value=0.02 Score=52.04 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=38.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHHc---CCceEEEech---HH----HhhhcCCc-----hHHHHHHHHHHhhcCCeEEEEc
Q 011553 227 GVILYGEPGTGKTLLAKAVANST---SATFLRVVGS---EL----IQKYLGDG-----PKLVRELFRVADDLSPSIVFID 291 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~---~l----~~~~~g~~-----~~~i~~~f~~a~~~~p~Il~iD 291 (483)
-.+++||+|+|||+.+-.++... +...+.+... .. +....|.. .....+++..+.. ...+|+||
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvViID 88 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIAID 88 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEEEE
Confidence 37889999999999888777754 4444333211 00 00111110 0001245554432 34799999
Q ss_pred CCccc
Q 011553 292 EIDAV 296 (483)
Q Consensus 292 EiD~l 296 (483)
|+..+
T Consensus 89 Eaqfl 93 (191)
T 1xx6_A 89 EVQFF 93 (191)
T ss_dssp SGGGS
T ss_pred CCCCC
Confidence 99776
No 272
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.84 E-value=0.0044 Score=56.77 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=23.1
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcC
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
+.-+.|.||+|||||||++.++..++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34488999999999999999999877
No 273
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.81 E-value=0.0056 Score=64.48 Aligned_cols=69 Identities=20% Similarity=0.310 Sum_probs=45.0
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCC--ceEEEechH-HHhh-----------hcCCchHHHHHHHHHHhhcCCeEEEE
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGSE-LIQK-----------YLGDGPKLVRELFRVADDLSPSIVFI 290 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~~~~-l~~~-----------~~g~~~~~i~~~f~~a~~~~p~Il~i 290 (483)
+.+++|.||+|+||||++++++..+.. ..+.+.... +... ..+.....+..++..+-...|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 456999999999999999999987753 344443322 1100 00111123445566666778999999
Q ss_pred cCC
Q 011553 291 DEI 293 (483)
Q Consensus 291 DEi 293 (483)
+|+
T Consensus 340 gEi 342 (511)
T 2oap_1 340 GEV 342 (511)
T ss_dssp SCC
T ss_pred CCc
Confidence 998
No 274
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.80 E-value=0.034 Score=61.58 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.2
Q ss_pred CceEEEcCCCCchHHHHHHHHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~ 248 (483)
.-++|+||+|+||||+.|.++..
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 34889999999999999999863
No 275
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.80 E-value=0.0049 Score=59.84 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=26.5
Q ss_pred CceEEEcCCCCchHHHHHHHHHHc-CCceEEEechHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANST-SATFLRVVGSELI 262 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l-~~~~~~v~~~~l~ 262 (483)
.-|+|.|+|||||||+++.++..+ +. ..++...+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~--~~i~~D~~r 38 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGF--YNINRDDYR 38 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTE--EEECHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCc--EEecccHHH
Confidence 348999999999999999999964 44 444444443
No 276
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.79 E-value=0.022 Score=66.77 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=22.6
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
++...+-|+||+|+|||||++++....
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 344458999999999999999999744
No 277
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.79 E-value=0.029 Score=52.37 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=18.0
Q ss_pred CCceEEEcCCCCchHHHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVA 246 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia 246 (483)
...+++.||+|||||+++..+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4569999999999998766554
No 278
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.79 E-value=0.008 Score=55.09 Aligned_cols=26 Identities=23% Similarity=0.515 Sum_probs=22.9
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcC
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
++-+.|.||+|+|||+|+++++....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44588999999999999999998865
No 279
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.76 E-value=0.0056 Score=56.81 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=22.8
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
..+.-+.|.||+|+|||||++.++...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 334458899999999999999999977
No 280
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.76 E-value=0.0064 Score=55.79 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=27.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
-|.|.|++|||||++++.+|..++.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 48899999999999999999999999873
No 281
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.71 E-value=0.017 Score=61.11 Aligned_cols=50 Identities=12% Similarity=0.054 Sum_probs=32.6
Q ss_pred HHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 277 FRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 277 f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
+..|-...|.||++||-- ++-+......+.+++..+.. +..||++|++.+
T Consensus 149 iA~aL~~~p~illlDEPt----------s~LD~~~~~~l~~~l~~l~~-----g~tii~vsHdl~ 198 (538)
T 3ozx_A 149 VAASLLREADVYIFDQPS----------SYLDVRERMNMAKAIRELLK-----NKYVIVVDHDLI 198 (538)
T ss_dssp HHHHHHSCCSEEEEESTT----------TTCCHHHHHHHHHHHHHHCT-----TSEEEEECSCHH
T ss_pred HHHHHHcCCCEEEEECCc----------ccCCHHHHHHHHHHHHHHhC-----CCEEEEEEeChH
Confidence 444455678999999963 33355666777788877631 356777777643
No 282
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.70 E-value=0.0066 Score=58.72 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=27.3
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELI 262 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~ 262 (483)
+.-|.|+|++||||||+++.++ .++.++ +++..+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~--id~D~~~ 109 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYI--IDSDHLG 109 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEE--EEHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcE--EehhHHH
Confidence 3448999999999999999999 577655 4455553
No 283
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.67 E-value=0.0064 Score=55.76 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=23.5
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcC
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
....-+.|.||+|+|||||+++++....
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3445588999999999999999999874
No 284
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.66 E-value=0.0044 Score=56.81 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=25.2
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
.++++|.||+|+|||+||..++...+ .++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIs 63 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIA 63 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEe
Confidence 46699999999999999999998865 4443
No 285
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.66 E-value=0.015 Score=62.11 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=22.8
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
++..-+.|.||+|+|||||++.++...
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 444559999999999999999999754
No 286
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.66 E-value=0.031 Score=59.83 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=22.8
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
++..-+.|.||+|+|||||+++++...
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 444559999999999999999999754
No 287
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.64 E-value=0.053 Score=48.96 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=17.9
Q ss_pred CCceEEEcCCCCchHHHH-HHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLA-KAVANS 248 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~La-raia~~ 248 (483)
.+.+++.+|+|+|||..+ -.+...
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHHH
Confidence 356999999999999863 344444
No 288
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.62 E-value=0.031 Score=58.97 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=30.3
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHHHhh
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSELIQK 264 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l~~~ 264 (483)
+.-|+|+|.||+||||+++.+|..++ .....++..++...
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~ 77 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRRE 77 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHH
Confidence 34589999999999999999999884 44455666555443
No 289
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.61 E-value=0.0049 Score=63.22 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=25.6
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCceE
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSATFL 254 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~~~ 254 (483)
+.-|+|+|+|||||||+|+.++..++..++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 445889999999999999999999876554
No 290
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.59 E-value=0.05 Score=55.17 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHHc
Q 011553 227 GVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l 249 (483)
-+.|+||+|+|||+|.++|+-.+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999996544
No 291
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.56 E-value=0.024 Score=55.23 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=26.1
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc----CCceEEEec
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST----SATFLRVVG 258 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l----~~~~~~v~~ 258 (483)
.+..++|+||+|+||||++..+|..+ |..+..+++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 34568999999999999999998754 434444443
No 292
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.49 E-value=0.035 Score=61.17 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=20.3
Q ss_pred CceEEEcCCCCchHHHHHHHHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~ 248 (483)
..++|+||+|+||||+.+.++..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 44889999999999999999863
No 293
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.04 Score=59.17 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=21.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l 249 (483)
..-+.|.||+|+|||||.+.++..+
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3448899999999999999999744
No 294
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.48 E-value=0.0068 Score=61.58 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=27.5
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCceEEEec
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~ 258 (483)
.-|+|.||+|+|||+|+..+|..++..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 348899999999999999999999876655443
No 295
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.46 E-value=0.0089 Score=58.59 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=25.1
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHcC
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
+++...+.|+||+|+|||||+++|+..+.
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 45556699999999999999999999873
No 296
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.39 E-value=0.0085 Score=56.49 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=23.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCc
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSAT 252 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~ 252 (483)
-+.|.||+|+|||||++.++..++..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 38899999999999999999987754
No 297
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.36 E-value=0.0097 Score=55.42 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=23.3
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcC
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
....-+.|.||+|+|||||+++++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3344588999999999999999999765
No 298
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.33 E-value=0.01 Score=58.05 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.0
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
..+.-+.|.||+|+||||+++.+|..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 344558899999999999999999865
No 299
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.21 E-value=0.031 Score=59.16 Aligned_cols=54 Identities=6% Similarity=0.051 Sum_probs=34.2
Q ss_pred HHHHHHhhcCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 275 ELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 275 ~~f~~a~~~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
-.+..|-...|.||++||-- ++-+...+..+.+++..+.. ..+..||++|+..+
T Consensus 394 v~iAraL~~~p~lLlLDEPT----------~gLD~~~~~~i~~~l~~l~~---~~g~tvi~vsHdl~ 447 (538)
T 3ozx_A 394 LYIAATLAKEADLYVLDQPS----------SYLDVEERYIVAKAIKRVTR---ERKAVTFIIDHDLS 447 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTT----------TTCCHHHHHHHHHHHHHHHH---HTTCEEEEECSCHH
T ss_pred HHHHHHHHcCCCEEEEeCCc----------cCCCHHHHHHHHHHHHHHHH---hCCCEEEEEeCCHH
Confidence 34555566789999999962 33455666667777765421 23456777877543
No 300
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.19 E-value=0.011 Score=57.38 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=24.1
Q ss_pred CCCCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 221 GIKPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 221 g~~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
++.+..-++|.||||+|||+|++.+|...
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45555569999999999999999998754
No 301
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.19 E-value=0.014 Score=62.80 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=31.8
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSEL 261 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~l 261 (483)
+.-|+|.|.|||||||++++++..+ +.+++.+++..+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 3448999999999999999999998 889988875544
No 302
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.16 E-value=0.029 Score=58.82 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=26.4
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEec
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST---SATFLRVVG 258 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~ 258 (483)
.+..|+|+|++|+||||++..+|..+ +.....+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 35569999999999999999999765 555555554
No 303
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.13 E-value=0.0051 Score=56.27 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCC
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSA 251 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~ 251 (483)
|.|.|++||||||+++.++..++.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999998753
No 304
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.13 E-value=0.012 Score=58.91 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.1
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
..+.-++|.||+|+||||+++.+|..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 345558999999999999999999865
No 305
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.10 E-value=0.03 Score=57.56 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=26.1
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcC---CceEEEec
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVG 258 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~ 258 (483)
+..++|+|++|+||||++..+|..+. .....+++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 45699999999999999999998652 44444443
No 306
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.09 E-value=0.095 Score=56.67 Aligned_cols=50 Identities=24% Similarity=0.266 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHH-HHHHHHHc--CCceEEEechH
Q 011553 196 LDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLL-AKAVANST--SATFLRVVGSE 260 (483)
Q Consensus 196 l~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~L-araia~~l--~~~~~~v~~~~ 260 (483)
.++|++.+..++.. ..-.||+||||||||++ +..|+..+ +...+.+..+.
T Consensus 191 N~~Q~~AV~~al~~---------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 191 DTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp CHHHHHHHHHHHHC---------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CHHHHHHHHHHhcC---------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 45667777666542 11278999999999974 44444432 44554444443
No 307
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.05 E-value=0.033 Score=62.77 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=20.8
Q ss_pred CCCceEEEcCCCCchHHHHHHHHH
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~ 247 (483)
...-+.|.||+|+|||||+++|+.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344489999999999999999994
No 308
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.05 E-value=0.015 Score=54.52 Aligned_cols=34 Identities=24% Similarity=0.466 Sum_probs=28.0
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHh
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQ 263 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~ 263 (483)
+-|.||||+||||+|+.++..++.+++ +..+++.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdllR 44 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQI--STGDMLR 44 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCee--echHHHH
Confidence 778999999999999999999987765 4445443
No 309
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.99 E-value=0.0069 Score=56.47 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=15.9
Q ss_pred CCceEEEcCCCCchHHHHHHHH-HHc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVA-NST 249 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia-~~l 249 (483)
+.-+.|.||+|+|||||++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4458899999999999999999 765
No 310
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.95 E-value=0.033 Score=50.53 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=19.7
Q ss_pred CceEEEcCCCCchHHHHHHHHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~ 248 (483)
+.+++.+|+|+|||+++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999988877764
No 311
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.95 E-value=0.066 Score=60.90 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=18.9
Q ss_pred CceEEEcCCCCchHHHHHHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVA 246 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia 246 (483)
..++|+||+|+||||+.|.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 458899999999999999984
No 312
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.90 E-value=0.016 Score=54.07 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=26.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEE
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLR 255 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~ 255 (483)
-|.|.|++|||||++++.+|..++.+|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 48899999999999999999999999864
No 313
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.90 E-value=0.028 Score=54.62 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=23.2
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHcC
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
.+.-|.|.||+|||||||++.++..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 344588999999999999999998775
No 314
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.85 E-value=0.0094 Score=56.12 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.5
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
....-+.|.||+|+|||||+++++...
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344458899999999999999999754
No 315
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.83 E-value=0.058 Score=49.87 Aligned_cols=29 Identities=14% Similarity=0.059 Sum_probs=20.9
Q ss_pred eEEEcCCCCchHHHHHHHHHHc---CCceEEE
Q 011553 228 VILYGEPGTGKTLLAKAVANST---SATFLRV 256 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l---~~~~~~v 256 (483)
.+++||.|+|||+.+-.++... +...+.+
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~ 62 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVF 62 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 5689999999998887776643 4444444
No 316
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.80 E-value=0.056 Score=52.67 Aligned_cols=72 Identities=18% Similarity=0.090 Sum_probs=43.6
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc---CCceEEEechH----H---H---hhh---------cCCch-HHHHHHHHHHh
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST---SATFLRVVGSE----L---I---QKY---------LGDGP-KLVRELFRVAD 281 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~~~~----l---~---~~~---------~g~~~-~~i~~~f~~a~ 281 (483)
+.-+++.|++|+|||+++..+|..+ +.....+++.. . . ... .+..+ ..+...+..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4558889999999999999999765 44555444321 0 0 000 01112 23345666665
Q ss_pred hcCCeEEEEcCCccc
Q 011553 282 DLSPSIVFIDEIDAV 296 (483)
Q Consensus 282 ~~~p~Il~iDEiD~l 296 (483)
.....+|+||=...+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 455679999986544
No 317
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.74 E-value=0.013 Score=57.06 Aligned_cols=35 Identities=11% Similarity=0.256 Sum_probs=23.8
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSEL 261 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l 261 (483)
-|.|.||+||||||+++.++..++ ..+..++...+
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 488999999999999999999776 33444554443
No 318
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.74 E-value=0.25 Score=44.95 Aligned_cols=24 Identities=21% Similarity=0.193 Sum_probs=18.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~ 248 (483)
.+.+++.+|+|+|||..+-..+-.
T Consensus 51 ~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 51 GMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEECCCCCchhhhhhHHHHH
Confidence 356999999999999876555443
No 319
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.73 E-value=0.018 Score=51.96 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=26.7
Q ss_pred eEEEcCCCCchHHHHHHHHHHcCCceEEEech
Q 011553 228 VILYGEPGTGKTLLAKAVANSTSATFLRVVGS 259 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~~~~~~v~~~ 259 (483)
+|++|++|||||++|..++.. +.+.+++..+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 789999999999999999987 7777777553
No 320
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.72 E-value=0.019 Score=53.72 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.5
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcC
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
.-|.|.||||+||||+++.++..++
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3488899999999999999999886
No 321
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.69 E-value=0.018 Score=51.26 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCC
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSA 251 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~ 251 (483)
-.+|+||+|+|||+|++||+-.++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4789999999999999999987653
No 322
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.68 E-value=0.12 Score=47.42 Aligned_cols=19 Identities=37% Similarity=0.426 Sum_probs=15.9
Q ss_pred CCceEEEcCCCCchHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAK 243 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Lar 243 (483)
.+.+++.+|+|+|||..+-
T Consensus 57 ~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 4679999999999998543
No 323
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.67 E-value=0.018 Score=56.65 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=22.9
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHcC
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
.+.-+.|.||+|+|||||++.|+..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 344488999999999999999998764
No 324
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.58 E-value=0.012 Score=54.95 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.0
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
...-+.|.||+|+|||||+++++...
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34448899999999999999999754
No 325
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.56 E-value=0.016 Score=60.43 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.2
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
.+.-++|.||+|+|||||++.||..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34448899999999999999999865
No 326
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.54 E-value=0.016 Score=53.55 Aligned_cols=23 Identities=43% Similarity=0.414 Sum_probs=20.5
Q ss_pred CceEEEcCCCCchHHHHHHHHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~ 248 (483)
.-+.|.||+|+|||||+++++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 34889999999999999999975
No 327
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.51 E-value=0.18 Score=49.42 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=18.7
Q ss_pred CCceEEEcCCCCchHHHHHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~ 248 (483)
.+.+++.+|+|+|||+.+-..+-.
T Consensus 44 ~~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 44 EYNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHH
Confidence 357999999999999976654443
No 328
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.50 E-value=0.016 Score=54.80 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=22.8
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
+.. .-+.|.||+|+|||||.++++...
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 345 568899999999999999999754
No 329
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.49 E-value=0.014 Score=55.92 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=22.8
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcC
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
....-+.|.||+|+|||||+++++....
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3344488999999999999999997543
No 330
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.43 E-value=0.025 Score=60.32 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=30.6
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcC----CceEEEechHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTS----ATFLRVVGSELI 262 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~----~~~~~v~~~~l~ 262 (483)
.-|+|.|+|||||||+|++++..++ .+++.++...+.
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir 437 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR 437 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHH
Confidence 3488999999999999999999886 677877765543
No 331
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.36 E-value=0.021 Score=55.95 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.7
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcC
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
+.-+.|.||+|+|||||++.++..+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34488999999999999999999765
No 332
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.35 E-value=0.044 Score=54.24 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=22.9
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
..+.-+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345558999999999999999999865
No 333
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.34 E-value=0.024 Score=55.48 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.0
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l 249 (483)
+.-+.|.||+|+||||+++.+|..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4458899999999999999999865
No 334
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.33 E-value=0.021 Score=51.05 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.8
Q ss_pred CCceEEEcCCCCchHHHHHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~ 248 (483)
..++||.|+||+|||++|.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 568999999999999999999874
No 335
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.31 E-value=0.015 Score=55.04 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=22.4
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
.+..-+.|.||+|+|||||+++++...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344458999999999999999999743
No 336
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.30 E-value=0.027 Score=50.40 Aligned_cols=25 Identities=28% Similarity=0.207 Sum_probs=21.6
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l 249 (483)
..-+.|.|++|+|||+|++.++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3458899999999999999998864
No 337
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.30 E-value=0.00025 Score=73.71 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=38.8
Q ss_pred CeEEEEEeCCCCCCChhhcCCCccce--EEEcCCC--CHHHHHHHHHHHHcCCCCCcccchHHHHhhccccchhhHHHHH
Q 011553 330 DVKVILATNRIESLDPALLRPGRIDR--KIEFPLP--DIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKTRR 405 (483)
Q Consensus 330 ~v~vI~ttn~~~~ld~allr~gR~~~--~i~~~~P--~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t~g~~~~~i~~~~ 405 (483)
.++|++|||+++.++++++|+|||++ .+.+|.| +.++|.+|++.++. .++..++..+.| ++|+..++
T Consensus 190 ~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--gadl~~l~ 260 (456)
T 2c9o_A 190 VIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQDILSMM 260 (456)
T ss_dssp EEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC---------------
T ss_pred EEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hhHHHHHH
Confidence 35555888999999999999999998 5566666 45667777664432 145566666666 55554443
No 338
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.25 E-value=0.014 Score=55.71 Aligned_cols=47 Identities=13% Similarity=0.388 Sum_probs=31.9
Q ss_pred cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCC
Q 011553 283 LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (483)
Q Consensus 283 ~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~l 343 (483)
..|.+|++||-- ++-+......+.+++..+.. . +..||++|+..+.+
T Consensus 170 ~~p~lllLDEPt----------s~LD~~~~~~l~~~l~~l~~---~-g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 170 TNPKMIVMDEPI----------AGVAPGLAHDIFNHVLELKA---K-GITFLIIEHRLDIV 216 (257)
T ss_dssp TCCSEEEEESTT----------TTCCHHHHHHHHHHHHHHHH---T-TCEEEEECSCCSTT
T ss_pred cCCCEEEEeCCc----------cCCCHHHHHHHHHHHHHHHH---C-CCEEEEEecCHHHH
Confidence 468899999962 34466677777777776521 2 46688888876654
No 339
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.24 E-value=0.022 Score=54.61 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=22.2
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHH
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~ 248 (483)
....-+.|.||+|+|||||+++++..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34445889999999999999999985
No 340
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.24 E-value=0.017 Score=53.64 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=22.1
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
...-+.|.||+|+|||||+++++...
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34448899999999999999999754
No 341
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.24 E-value=0.017 Score=55.38 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=22.5
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
....-+.|.||+|+|||||+++++...
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 334458899999999999999999754
No 342
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.21 E-value=0.03 Score=55.23 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.7
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcC
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
+.-+.|.||+||||||++++++..+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34588999999999999999998875
No 343
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.20 E-value=0.017 Score=55.21 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=22.7
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
....-+.|.||+|+|||||+++++...
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344558999999999999999999754
No 344
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.19 E-value=0.017 Score=55.56 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=22.6
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
....-+.|.||+|+|||||+++|+...
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344458899999999999999999754
No 345
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.17 E-value=0.049 Score=59.23 Aligned_cols=54 Identities=17% Similarity=0.335 Sum_probs=34.2
Q ss_pred CeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCCChhhcCCCccceEEEc
Q 011553 285 PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEF 359 (483)
Q Consensus 285 p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~ld~allr~gR~~~~i~~ 359 (483)
|.+|++||-- ++-+......+.+++..+.. .+..||++|+..+. .. .+++++.+
T Consensus 565 p~llllDEPt----------~~LD~~~~~~i~~~l~~l~~----~g~tvi~vtHd~~~-----~~--~~d~i~~l 618 (670)
T 3ux8_A 565 RTLYILDEPT----------TGLHVDDIARLLDVLHRLVD----NGDTVLVIEHNLDV-----IK--TADYIIDL 618 (670)
T ss_dssp CEEEEEESTT----------TTCCHHHHHHHHHHHHHHHH----TTCEEEEECCCHHH-----HT--TCSEEEEE
T ss_pred CcEEEEeCCC----------CCCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHH-----HH--hCCEEEEe
Confidence 4699999962 34456667777777776532 25678888886442 23 34555555
No 346
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.14 E-value=0.03 Score=51.87 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=16.3
Q ss_pred eEEEcCCCCchHH-HHHHHHH
Q 011553 228 VILYGEPGTGKTL-LAKAVAN 247 (483)
Q Consensus 228 vLL~GppGtGKT~-Laraia~ 247 (483)
.+++||.|+|||+ |.+.+.+
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r 51 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRR 51 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999 6666544
No 347
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.14 E-value=0.015 Score=54.35 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=22.7
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
....-+.|.||+|+|||||.++++...
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334458899999999999999999864
No 348
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.13 E-value=0.018 Score=54.66 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.7
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHH
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~ 248 (483)
...-+.|.||+|+|||||+++++..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3444889999999999999999985
No 349
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.12 E-value=0.091 Score=61.42 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=22.5
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHcC
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
+..-+.|+||+|+|||||+++++....
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344489999999999999999987553
No 350
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.12 E-value=0.052 Score=55.74 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=19.7
Q ss_pred CCceEEEcCCCCchHHHHHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~ 248 (483)
.+-.++.|+||||||++...++..
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc
Confidence 344789999999999999887753
No 351
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.10 E-value=0.019 Score=54.81 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=22.5
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
....-+.|.||+|+|||||.++++...
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 334458899999999999999999754
No 352
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.09 E-value=0.072 Score=54.73 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=44.8
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc----CCceEEEechHHH----------hhh------c---CCc-hHHHHHHHHH
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST----SATFLRVVGSELI----------QKY------L---GDG-PKLVRELFRV 279 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l----~~~~~~v~~~~l~----------~~~------~---g~~-~~~i~~~f~~ 279 (483)
.++.++++|++|+||||++-.+|..+ +....-+++.... ... . +.. ...+...+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45678899999999999999888654 5556555543210 000 0 011 2233556666
Q ss_pred HhhcCCeEEEEcCCccc
Q 011553 280 ADDLSPSIVFIDEIDAV 296 (483)
Q Consensus 280 a~~~~p~Il~iDEiD~l 296 (483)
+......+++||=...+
T Consensus 179 ~~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHTTCSEEEEECCCCC
T ss_pred HHhCCCCEEEEECCCcc
Confidence 65445579999976433
No 353
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.06 E-value=0.016 Score=54.66 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=21.9
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
...-+.|.||+|+|||||.++++...
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34448899999999999999999754
No 354
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.05 E-value=0.016 Score=54.91 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=22.1
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
...-+.|.||+|+|||||+++++...
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458899999999999999999754
No 355
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.04 E-value=0.019 Score=55.02 Aligned_cols=47 Identities=28% Similarity=0.425 Sum_probs=32.1
Q ss_pred cCCeEEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCCCC
Q 011553 283 LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESL 343 (483)
Q Consensus 283 ~~p~Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~~l 343 (483)
..|.+|++||-- ++-+......+.+++..+.. . +..||++|+.++.+
T Consensus 155 ~~p~lllLDEPt----------s~LD~~~~~~l~~~l~~l~~---~-g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 155 HEPDILILDEPL----------VGLDREGKTDLLRIVEKWKT---L-GKTVILISHDIETV 201 (266)
T ss_dssp TCCSEEEEESTT----------TTCCHHHHHHHHHHHHHHHH---T-TCEEEEECSCCTTT
T ss_pred cCCCEEEEcCcc----------ccCCHHHHHHHHHHHHHHHH---c-CCEEEEEeCCHHHH
Confidence 457899999963 33466677777777776521 2 45788888876654
No 356
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.04 E-value=0.057 Score=48.02 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=30.1
Q ss_pred ccHHHHHHHHHHHhcCCCChhhhhhhCCCCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 195 GLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 195 Gl~~~~~~l~e~i~~pl~~~~~~~~~g~~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
.++...+.+.+.+... ... .......|+|+|++|+|||+|+.+++...
T Consensus 25 ~~~~l~~~l~~~~~~~-~~~------~~~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 25 KISQWREWIDEKLGGG-SGG------GGSYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp BCHHHHHHHHHHC---------------CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhh-cCC------CCCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556666666655431 110 11233459999999999999999998754
No 357
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.95 E-value=0.023 Score=57.09 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l 249 (483)
..-+.|.||+|||||||.++||...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3448899999999999999999754
No 358
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.94 E-value=0.16 Score=51.31 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=21.6
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l 249 (483)
...++|+||+|+|||+|++.|++..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 3349999999999999999998864
No 359
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.94 E-value=0.023 Score=60.33 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=30.5
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHcC----CceEEEechHHHh
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANSTS----ATFLRVVGSELIQ 263 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l~----~~~~~v~~~~l~~ 263 (483)
.+..+.|.|++|||||||+++++..++ ..+..+++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 344588999999999999999999875 2454566666543
No 360
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.94 E-value=0.078 Score=52.54 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l 249 (483)
..-+.|.||||+|||||.++++..+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3448899999999999999999754
No 361
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.90 E-value=0.02 Score=54.30 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=22.2
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
...-+.|.||+|+|||||.++++...
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34458899999999999999999765
No 362
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.87 E-value=0.024 Score=57.13 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=21.8
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
...-+.|.||+|||||||.++||...
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34448899999999999999999743
No 363
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.86 E-value=0.03 Score=50.26 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=20.4
Q ss_pred eEEEcCCCCchHHHHHHHHHHc
Q 011553 228 VILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l 249 (483)
+.|.|++|+|||+|++.++...
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999999854
No 364
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.85 E-value=0.033 Score=49.60 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=20.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHHc
Q 011553 227 GVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l 249 (483)
-+.|.|++|+|||+|+..++..+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 48899999999999999999875
No 365
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.80 E-value=0.019 Score=55.45 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=21.9
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
...-+.|.||+|+|||||+++++...
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34448899999999999999999754
No 366
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.79 E-value=0.021 Score=57.14 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=21.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l 249 (483)
..-+.|.||+|||||||.++||...
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3448899999999999999999754
No 367
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.79 E-value=0.029 Score=53.90 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=20.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHHc
Q 011553 227 GVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l 249 (483)
.+.|.||+|+|||||.++++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999854
No 368
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.78 E-value=0.018 Score=54.75 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.1
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
...-+.|.||+|+|||||.++++...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34448899999999999999999854
No 369
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.77 E-value=0.032 Score=50.26 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
-++|.|++|+|||+|+++++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999999985
No 370
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.73 E-value=0.02 Score=57.18 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=21.9
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
...-+.|.||+|||||||.++||...
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 33448899999999999999999754
No 371
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.72 E-value=0.23 Score=49.53 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=17.1
Q ss_pred CCceEEEcCCCCchHHHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVA 246 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia 246 (483)
.+.+++.+|+|+|||+.+-..+
T Consensus 58 ~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 58 GRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp TCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEECCCCcHHHHHHHHHH
Confidence 3569999999999998654433
No 372
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.62 E-value=0.07 Score=54.94 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=23.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCc
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSAT 252 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~ 252 (483)
-+.|.||+|||||+|++.|+......
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCC
Confidence 38899999999999999999988653
No 373
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.61 E-value=0.044 Score=51.28 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=22.6
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcC
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
.-|.|.|++|+||||+++.++..+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3488999999999999999999984
No 374
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.58 E-value=0.024 Score=57.12 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.6
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l 249 (483)
..-+.|.||+|||||||.++||...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3448899999999999999999754
No 375
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.57 E-value=0.2 Score=46.84 Aligned_cols=20 Identities=15% Similarity=0.115 Sum_probs=15.0
Q ss_pred eEEEcCCCCchHHHHHHHHH
Q 011553 228 VILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~ 247 (483)
.+++||.|+|||+.+-..+.
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~ 41 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVR 41 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 77899999999965544443
No 376
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.55 E-value=0.022 Score=50.86 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.5
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcC
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~ 250 (483)
.+.|+|++|+|||||++.++..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 488999999999999999998764
No 377
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=93.51 E-value=0.51 Score=49.00 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=18.5
Q ss_pred CceEEEcCCCCchHHHHHHHHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~ 248 (483)
+.+++.+|+|+|||..+-..+-.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 46999999999999876655543
No 378
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.49 E-value=0.037 Score=55.45 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=24.2
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCCc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSAT 252 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~~ 252 (483)
..-+.|.||+|+|||||++.++......
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3448999999999999999999987654
No 379
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.46 E-value=0.054 Score=56.81 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=23.6
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCC
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSA 251 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~ 251 (483)
..|+|.|.+||||||+++++|..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 45889999999999999999999874
No 380
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.39 E-value=0.034 Score=55.70 Aligned_cols=72 Identities=22% Similarity=0.400 Sum_probs=43.8
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHcCC--ceEEEech-HHHh-------hhcC-C-------chHHHHHHHHHHhhcC
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANSTSA--TFLRVVGS-ELIQ-------KYLG-D-------GPKLVRELFRVADDLS 284 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l~~--~~~~v~~~-~l~~-------~~~g-~-------~~~~i~~~f~~a~~~~ 284 (483)
.....++|.||+|+|||||+++++..... ..+.+... ++.. .++. . ....++..+..+....
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~ 252 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMK 252 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcC
Confidence 34556999999999999999999987642 33333321 1100 0110 0 1112455666666677
Q ss_pred CeEEEEcCCc
Q 011553 285 PSIVFIDEID 294 (483)
Q Consensus 285 p~Il~iDEiD 294 (483)
|.+++++|+.
T Consensus 253 pd~~l~~e~r 262 (361)
T 2gza_A 253 PTRILLAELR 262 (361)
T ss_dssp CSEEEESCCC
T ss_pred CCEEEEcCch
Confidence 8888898873
No 381
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.39 E-value=0.031 Score=56.69 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=21.9
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHH
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~ 248 (483)
....-+.|.||+|||||||.++|+..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 34445899999999999999999963
No 382
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.36 E-value=0.097 Score=61.19 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=22.4
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
.+...+-|+||+|+|||||+++++...
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 344458999999999999999999743
No 383
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.36 E-value=0.1 Score=52.05 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.7
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l 249 (483)
..-|.|+|+||+|||+|+.+++..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999998765
No 384
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.29 E-value=0.03 Score=53.59 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=21.8
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l 249 (483)
..-+.|.||+|+|||||.++++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3448899999999999999999765
No 385
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.28 E-value=0.37 Score=48.21 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=16.8
Q ss_pred CCceEEEcCCCCchHHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAV 245 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Larai 245 (483)
.+.+++.+|+|+|||..+-..
T Consensus 74 ~~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 74 GRDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp TCCEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEECCCCCCchHHHHHH
Confidence 456999999999999765543
No 386
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.27 E-value=0.047 Score=46.74 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=20.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.+++.|++|+|||+|+.+++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999874
No 387
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.26 E-value=0.021 Score=57.17 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=21.9
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
...-+.|.||+|||||||.++||...
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34448899999999999999999743
No 388
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.23 E-value=0.31 Score=48.69 Aligned_cols=19 Identities=37% Similarity=0.347 Sum_probs=15.9
Q ss_pred CCceEEEcCCCCchHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAK 243 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Lar 243 (483)
.+.+++.+|+|+|||+.+-
T Consensus 77 ~~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp TCCEEECCCSCSSSHHHHH
T ss_pred CCCEEEECCCCCcccHHHH
Confidence 4569999999999998743
No 389
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.22 E-value=0.045 Score=47.47 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.8
Q ss_pred eEEEcCCCCchHHHHHHHHHHc
Q 011553 228 VILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l 249 (483)
.+|+||+|+|||++..||+-.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998654
No 390
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.22 E-value=0.035 Score=53.96 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=22.5
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
....-+.|.||+|+|||||.++++...
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 334448899999999999999999754
No 391
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.16 E-value=0.022 Score=54.20 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=22.4
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcC
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
.-|+|.|++|+||||+++.++..+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3488999999999999999999984
No 392
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.11 E-value=0.27 Score=48.60 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=17.1
Q ss_pred CCceEEEcCCCCchHHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAV 245 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Larai 245 (483)
++.+++.+|+|+|||+.+-..
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 477999999999999865533
No 393
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.10 E-value=0.05 Score=46.82 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=20.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|++.|++|+|||+|+.++...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 394
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.09 E-value=0.039 Score=48.97 Aligned_cols=20 Identities=30% Similarity=0.645 Sum_probs=19.0
Q ss_pred eEEEcCCCCchHHHHHHHHH
Q 011553 228 VILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~ 247 (483)
|+|.|++|+|||+|++.++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999999986
No 395
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.07 E-value=0.047 Score=47.49 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.8
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
-+.|.|++|+|||+|.++++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999863
No 396
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.06 E-value=0.083 Score=56.93 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=18.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.++|.||||||||+++..++..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999987776654
No 397
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.00 E-value=0.046 Score=53.87 Aligned_cols=35 Identities=29% Similarity=0.225 Sum_probs=26.3
Q ss_pred CCCCceEEEcCCCCchHHHHHHHHHHc---CCceEEEe
Q 011553 223 KPPKGVILYGEPGTGKTLLAKAVANST---SATFLRVV 257 (483)
Q Consensus 223 ~~~~gvLL~GppGtGKT~Laraia~~l---~~~~~~v~ 257 (483)
..+..++|+||+|+||||++..+|..+ +.....++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 345569999999999999999998754 34444444
No 398
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.99 E-value=0.03 Score=58.20 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=27.6
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHcCC---ceEEEechHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANSTSA---TFLRVVGSEL 261 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l~~---~~~~v~~~~l 261 (483)
+.-|+|+|.||+|||++++.++..++. +...++...+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~ 78 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQY 78 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchh
Confidence 345999999999999999999998653 4444444333
No 399
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.97 E-value=0.062 Score=48.94 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.9
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l 249 (483)
...|+|+|++|+|||+|+.+++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3459999999999999999999854
No 400
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.96 E-value=0.055 Score=46.35 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999999864
No 401
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.96 E-value=0.049 Score=56.49 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.1
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
+....-+.|.||+|+|||||++.++...
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3444559999999999999999999853
No 402
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.90 E-value=0.054 Score=46.27 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=20.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|++.|++|+|||+|+.+++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999874
No 403
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.87 E-value=0.081 Score=52.71 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.4
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCc
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSAT 252 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~ 252 (483)
-+.|.||+|+|||+|.+.|++.....
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 48999999999999999999988654
No 404
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.79 E-value=0.079 Score=48.85 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=28.7
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCCceEEEechHHHhhhc
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYL 266 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~~~~~v~~~~l~~~~~ 266 (483)
.|-|+|..|||||++++.++. +|.+++ ++..+.....
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vi--daD~ia~~l~ 47 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLV--DTDLIAHRIT 47 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEE--EHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEE--ECcHHHHHHh
Confidence 488999999999999999998 887765 4555544333
No 405
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.78 E-value=0.072 Score=48.62 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.2
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcC
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
..++|.|++|+|||+|+..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4599999999999999999998764
No 406
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=92.77 E-value=0.14 Score=55.69 Aligned_cols=50 Identities=10% Similarity=0.111 Sum_probs=29.7
Q ss_pred HHHhhcCCe--EEEEcCCccccccccCCCCCChHHHHHHHHHHHHhccCCcCCCCeEEEEEeCCCC
Q 011553 278 RVADDLSPS--IVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIE 341 (483)
Q Consensus 278 ~~a~~~~p~--Il~iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l~~~~~~~~v~vI~ttn~~~ 341 (483)
..|-...|. +|++||-- ++-+......+.+++..+.. .+..||++|+..+
T Consensus 214 ArAL~~~p~~~lLlLDEPt----------sgLD~~~~~~l~~~l~~l~~----~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 214 ATQIGSRLTGVLYVLDEPS----------IGLHQRDNDRLIATLKSMRD----LGNTLIVVEHDED 265 (670)
T ss_dssp HHHHHTCCCSCEEEEECTT----------TTCCGGGHHHHHHHHHHHHH----TTCEEEEECCCHH
T ss_pred HHHHhhCCCCCEEEEECCc----------cCCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCHH
Confidence 333344666 99999963 23344455666777766531 2456777777643
No 407
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.76 E-value=0.06 Score=46.35 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=20.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 408
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.73 E-value=0.059 Score=49.77 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=21.1
Q ss_pred eEEEcCCCCchHHHHHHHHHHcC
Q 011553 228 VILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~ 250 (483)
|.|.|++|+||||+++.++..+.
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 77889999999999999999774
No 409
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.70 E-value=0.062 Score=46.08 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|++.|++|+|||+|+.++...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999999874
No 410
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.68 E-value=0.059 Score=46.78 Aligned_cols=21 Identities=52% Similarity=0.816 Sum_probs=19.4
Q ss_pred ceEEEcCCCCchHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~ 247 (483)
.|+|.|++|+|||+|++++..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 499999999999999999975
No 411
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.67 E-value=0.51 Score=51.50 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=16.7
Q ss_pred CCceEEEcCCCCchHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAK 243 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Lar 243 (483)
...++++||+|+|||+.+-
T Consensus 39 ~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAE 57 (720)
T ss_dssp TCEEEEECCGGGCHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 5679999999999999873
No 412
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.66 E-value=0.064 Score=46.24 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.7
Q ss_pred ceEEEcCCCCchHHHHHHHHHHc
Q 011553 227 GVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l 249 (483)
.|++.|++|+|||+|++++....
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 49999999999999999998753
No 413
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.62 E-value=0.064 Score=46.71 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|+.++...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999999864
No 414
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.60 E-value=0.065 Score=46.24 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|++.|++|+|||+|++++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4999999999999999999864
No 415
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.59 E-value=0.063 Score=46.29 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 416
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=92.58 E-value=0.05 Score=51.64 Aligned_cols=60 Identities=8% Similarity=0.080 Sum_probs=54.5
Q ss_pred ccCCCCcccCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhcChhHHHHHHHHHHHHhhhC
Q 011553 51 AAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVTNQERLKPQEEKAEEDRSKVDDLRG 110 (483)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (483)
+|..|++.++..|+.+.+..|++..+.+.+++++..+.++..++.++.+.+|+|++.|+.
T Consensus 187 KQ~LLe~~d~~~Rl~~l~~lL~~e~e~~~l~~~I~~~v~~~~~k~Qrey~LrEQlk~Iqk 246 (252)
T 3ljc_A 187 KQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQK 246 (252)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344478888899999999999999999999999999999999999999999999999984
No 417
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.54 E-value=0.067 Score=46.68 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.5
Q ss_pred CceEEEcCCCCchHHHHHHHHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~ 248 (483)
..|++.|++|+|||+|+.++...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 34999999999999999999874
No 418
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.50 E-value=0.055 Score=50.58 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=17.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHc
Q 011553 228 VILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l 249 (483)
|.|.|++|+||||+++.+++.+
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7888999999999999999877
No 419
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.49 E-value=0.1 Score=48.26 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=23.9
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcCCc
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTSAT 252 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~~~ 252 (483)
.-|.|.|++|+||||+++.+++.++..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 348889999999999999999999864
No 420
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.45 E-value=0.064 Score=47.37 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=20.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
-|+|.|++|+|||+|+++++..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4999999999999999999873
No 421
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.42 E-value=0.071 Score=45.79 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=19.5
Q ss_pred eEEEcCCCCchHHHHHHHHHH
Q 011553 228 VILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~ 248 (483)
|++.|++|+|||+|+.++...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 422
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.41 E-value=0.071 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=20.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|++.|++|+|||+|++++...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 423
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.39 E-value=0.068 Score=47.98 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=20.9
Q ss_pred CCceEEEcCCCCchHHHHHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~ 248 (483)
...|+|.|++|+|||+|+.++...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 345999999999999999999864
No 424
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=92.39 E-value=0.68 Score=47.13 Aligned_cols=17 Identities=24% Similarity=0.474 Sum_probs=15.0
Q ss_pred CCceEEEcCCCCchHHH
Q 011553 225 PKGVILYGEPGTGKTLL 241 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~L 241 (483)
.+.+++.+|+|+|||+.
T Consensus 93 g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 93 GRDLMACAQTGSGKTAA 109 (434)
T ss_dssp TCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCchHH
Confidence 46799999999999984
No 425
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.38 E-value=0.034 Score=50.33 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=21.7
Q ss_pred CCCCCceEEEcCCCCchHHHHHHHHHH
Q 011553 222 IKPPKGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 222 ~~~~~gvLL~GppGtGKT~Laraia~~ 248 (483)
+....-+.|.|++|+|||+|+++++..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 344445999999999999999998753
No 426
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.38 E-value=0.071 Score=45.84 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|+.++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3999999999999999999863
No 427
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.32 E-value=0.069 Score=46.11 Aligned_cols=20 Identities=45% Similarity=0.715 Sum_probs=18.6
Q ss_pred eEEEcCCCCchHHHHHHHHH
Q 011553 228 VILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~ 247 (483)
|+|.|++|+|||+|+.+++.
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 89999999999999999963
No 428
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.28 E-value=0.073 Score=46.92 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=20.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|+.++...
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999999873
No 429
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.24 E-value=0.073 Score=45.87 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.5
Q ss_pred ceEEEcCCCCchHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~ 247 (483)
.|++.|++|+|||+|+.++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 389999999999999999986
No 430
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.16 E-value=0.076 Score=46.18 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|+.+++..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999999863
No 431
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.14 E-value=0.075 Score=49.97 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.4
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcC
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~ 250 (483)
-|.|.|++|+||||+++.++..+.
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 388899999999999999998763
No 432
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.14 E-value=0.068 Score=45.98 Aligned_cols=21 Identities=43% Similarity=0.782 Sum_probs=18.9
Q ss_pred ceEEEcCCCCchHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~ 247 (483)
-|+|.|++|+|||+|++++..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 389999999999999999864
No 433
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.12 E-value=0.078 Score=54.27 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.6
Q ss_pred eEEEcCCCCchHHHHHHHHHH
Q 011553 228 VILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~ 248 (483)
+.|.||+|+|||||+++++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999875
No 434
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.11 E-value=0.073 Score=46.79 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=20.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
-|+|.|+||+|||+|.++++..
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 435
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.11 E-value=0.079 Score=46.16 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|++++...
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999999875
No 436
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.09 E-value=0.071 Score=46.47 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.8
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|++++...
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4999999999999999999853
No 437
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.08 E-value=0.091 Score=45.34 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.5
Q ss_pred CceEEEcCCCCchHHHHHHHHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~ 248 (483)
..|++.|++|+|||+|+.++...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999863
No 438
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.04 E-value=0.083 Score=46.46 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=20.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|+.++...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999999874
No 439
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.04 E-value=0.079 Score=46.84 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|+++++..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 440
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.04 E-value=0.082 Score=45.94 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHHc
Q 011553 227 GVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l 249 (483)
.|+|.|++|+|||+|++++....
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 49999999999999999998743
No 441
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.01 E-value=0.098 Score=45.55 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~ 247 (483)
...|+|.|++|+|||+|+.++..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34599999999999999999986
No 442
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.94 E-value=0.15 Score=46.62 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=21.8
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcC
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
.-++|.|++|+|||+|+..++....
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3488999999999999999998753
No 443
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.94 E-value=0.085 Score=46.71 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=20.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|++.|++|+|||+|+.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3999999999999999999874
No 444
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.94 E-value=0.085 Score=46.91 Aligned_cols=22 Identities=41% Similarity=0.597 Sum_probs=20.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|+.++...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999999874
No 445
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.93 E-value=0.086 Score=46.76 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.8
Q ss_pred CceEEEcCCCCchHHHHHHHHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~ 248 (483)
-.|+|.|++|+|||+|+.++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34999999999999999999875
No 446
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.91 E-value=0.083 Score=46.45 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|++++...
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999999864
No 447
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.88 E-value=0.087 Score=46.14 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|+++++..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4999999999999999999874
No 448
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.87 E-value=0.092 Score=46.92 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.8
Q ss_pred CceEEEcCCCCchHHHHHHHHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~ 248 (483)
..|+|.|++|+|||+|+.+++..
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999999874
No 449
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.86 E-value=0.09 Score=45.93 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|+.++...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4999999999999999999874
No 450
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.83 E-value=0.14 Score=56.69 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=18.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
-++|.||||||||+++..++..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999987776654
No 451
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.80 E-value=0.3 Score=48.32 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.5
Q ss_pred CCceEEEcCCCCchHHHHHHHHHHc
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~l 249 (483)
..-+.|.|+||+||||++.+++..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4458899999999999999998754
No 452
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.79 E-value=0.14 Score=52.36 Aligned_cols=26 Identities=31% Similarity=0.213 Sum_probs=22.3
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
.+..++|+|++|+||||++..+|..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45568899999999999999999865
No 453
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=91.70 E-value=0.65 Score=46.08 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.0
Q ss_pred CCceEEEcCCCCchHHHHHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~ 248 (483)
...++|+|+||+|||+|..+++..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345999999999999999999864
No 454
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.68 E-value=0.12 Score=50.60 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.2
Q ss_pred eEEEcCCCCchHHHHHHHHHHc
Q 011553 228 VILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l 249 (483)
++|+|++|+|||||.+.++...
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 7899999999999999999754
No 455
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.66 E-value=0.095 Score=46.38 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHHc
Q 011553 227 GVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l 249 (483)
.|+|.|++|+|||+|++.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 39999999999999999888754
No 456
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=91.66 E-value=0.78 Score=46.25 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=24.7
Q ss_pred ceEEEcCCCCchHHHHHHHHHHc----CCceEEEec
Q 011553 227 GVILYGEPGTGKTLLAKAVANST----SATFLRVVG 258 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l----~~~~~~v~~ 258 (483)
++++.+|+|+|||..+-+++... +...+.+..
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 69999999999999888776554 555555554
No 457
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.66 E-value=0.087 Score=45.88 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.3
Q ss_pred ceEEEcCCCCchHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~ 247 (483)
.|+|.|++|+|||+|+.++..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999999975
No 458
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.63 E-value=0.096 Score=45.95 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=20.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|+.++...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 459
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.63 E-value=0.092 Score=46.87 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|++.|++|+|||+|+++++..
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999999973
No 460
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.63 E-value=0.097 Score=45.66 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=20.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|+.++...
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4999999999999999999874
No 461
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.62 E-value=0.097 Score=45.87 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.9
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|++++...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999863
No 462
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.59 E-value=0.06 Score=50.06 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
-+.|.|++|+||||+++.++..
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3889999999999999999987
No 463
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=91.58 E-value=0.028 Score=52.58 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.4
Q ss_pred eEEEcCCCCchHHHHHHHHHHcC
Q 011553 228 VILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l~ 250 (483)
+.|+||+|+|||+|+++|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 56789999999999999998764
No 464
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.57 E-value=0.093 Score=47.93 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCC
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSA 251 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~ 251 (483)
-.+|+||+|+|||++..||+-.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3789999999999999999876654
No 465
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.57 E-value=0.1 Score=46.43 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.4
Q ss_pred eEEEcCCCCchHHHHHHHHHH
Q 011553 228 VILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~ 248 (483)
|+|.|++|+|||+|++.++..
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999988764
No 466
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.57 E-value=0.098 Score=48.69 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=21.7
Q ss_pred ceEEEcCCCCchHHHHHHHHHHcCC
Q 011553 227 GVILYGEPGTGKTLLAKAVANSTSA 251 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l~~ 251 (483)
-|.|.|++|+||||+++.+++.+..
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3778899999999999999987654
No 467
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=91.56 E-value=2.7 Score=45.38 Aligned_cols=35 Identities=17% Similarity=0.094 Sum_probs=23.2
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHcCCceEEEec
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 258 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l~~~~~~v~~ 258 (483)
..+.+++.+|+|+|||+.+-...-+-+...+.+..
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~P 265 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNP 265 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEES
T ss_pred cCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcc
Confidence 34569999999999997665444444544444443
No 468
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.50 E-value=0.13 Score=45.71 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=20.8
Q ss_pred CCceEEEcCCCCchHHHHHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~ 248 (483)
...|+|.|++|+|||+|+.++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345999999999999999999753
No 469
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.50 E-value=0.12 Score=46.16 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.1
Q ss_pred CCceEEEcCCCCchHHHHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~ 247 (483)
...|+|.|++|+|||+|+.+++.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34599999999999999999864
No 470
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.47 E-value=0.1 Score=46.25 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|+.+++..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999999874
No 471
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.46 E-value=0.1 Score=46.33 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=19.6
Q ss_pred eEEEcCCCCchHHHHHHHHHH
Q 011553 228 VILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~ 248 (483)
|+|.|++|+|||+|+..+...
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHHhC
Confidence 999999999999999999874
No 472
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.44 E-value=0.12 Score=50.70 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.9
Q ss_pred CCceEEEcCCCCchHHHHHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~~ 248 (483)
..+++|.|++|+|||++|.++...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 567999999999999999999875
No 473
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=91.44 E-value=0.67 Score=47.29 Aligned_cols=17 Identities=35% Similarity=0.391 Sum_probs=15.2
Q ss_pred CceEEEcCCCCchHHHH
Q 011553 226 KGVILYGEPGTGKTLLA 242 (483)
Q Consensus 226 ~gvLL~GppGtGKT~La 242 (483)
+.+|+.||+|+|||..+
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 46999999999999975
No 474
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.40 E-value=0.089 Score=46.35 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=19.4
Q ss_pred eEEEcCCCCchHHHHHHHHHH
Q 011553 228 VILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~ 248 (483)
|++.|++|+|||+|+.+++..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 899999999999999999863
No 475
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.40 E-value=0.11 Score=45.50 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.5
Q ss_pred CceEEEcCCCCchHHHHHHHHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~ 248 (483)
..|++.|++|+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 34999999999999999999864
No 476
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.39 E-value=0.1 Score=48.12 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=20.5
Q ss_pred eEEEcCCCCchHHHHHHHHHHc
Q 011553 228 VILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~l 249 (483)
|.|.|++|+||||+++.++..+
T Consensus 6 i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7888999999999999999876
No 477
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=91.39 E-value=0.37 Score=55.36 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=18.0
Q ss_pred CCceEEEcCCCCchHHHHHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Laraia~ 247 (483)
...+|++||+|+|||+.+-..+.
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~ 221 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIA 221 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHH
Confidence 35699999999999987654443
No 478
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.36 E-value=0.11 Score=46.18 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|++++...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4999999999999999999974
No 479
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.29 E-value=0.11 Score=46.15 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.8
Q ss_pred ceEEEcCCCCchHHHHHHHHHHc
Q 011553 227 GVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l 249 (483)
-|+|.|++|+|||+|+.++....
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 39999999999999999999754
No 480
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.25 E-value=0.11 Score=46.32 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|+.+++..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999999874
No 481
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.25 E-value=0.12 Score=46.41 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.2
Q ss_pred ceEEEcCCCCchHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~ 247 (483)
-|+|.|++|+|||+|+++++.
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999999974
No 482
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.25 E-value=0.11 Score=45.52 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=19.5
Q ss_pred ceEEEcCCCCchHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~ 247 (483)
.|+|.|++|+|||+|+.++..
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 499999999999999999985
No 483
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.24 E-value=0.098 Score=53.36 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=19.7
Q ss_pred ceEEEcCCCCchHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVAN 247 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~ 247 (483)
-+.|.||+|+|||||.++++.
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 488999999999999999998
No 484
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.23 E-value=0.099 Score=56.13 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=20.0
Q ss_pred CceEEEcCCCCchHHHHHHHHHHc
Q 011553 226 KGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l 249 (483)
+.++++|+||||||+++.++...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 459999999999999888776543
No 485
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.23 E-value=0.12 Score=54.64 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=28.3
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcC---CceEEEechHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTS---ATFLRVVGSEL 261 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~---~~~~~v~~~~l 261 (483)
.-|+|+|++|+||||+++.++..++ .++..+++..+
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 4488999999999999999998764 45666665444
No 486
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.21 E-value=0.11 Score=46.45 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|+.++...
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999999864
No 487
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.21 E-value=0.085 Score=46.10 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=20.2
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
-|+|.|++|+|||+|+..++..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999999874
No 488
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.20 E-value=0.11 Score=45.91 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.0
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|+.++...
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999999863
No 489
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.18 E-value=0.11 Score=46.01 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|+.+++..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3999999999999999999864
No 490
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.13 E-value=0.12 Score=45.82 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=20.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|+.++...
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999999874
No 491
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.13 E-value=0.12 Score=46.43 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=20.6
Q ss_pred ceEEEcCCCCchHHHHHHHHHHc
Q 011553 227 GVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~l 249 (483)
.|+|.|++|+|||+|+.++....
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 49999999999999999998743
No 492
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.12 E-value=0.12 Score=46.11 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.3
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|++++...
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999999874
No 493
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.09 E-value=0.12 Score=46.00 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=19.6
Q ss_pred eEEEcCCCCchHHHHHHHHHH
Q 011553 228 VILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 228 vLL~GppGtGKT~Laraia~~ 248 (483)
|+|.|++|+|||+|+.++...
T Consensus 24 i~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 999999999999999999864
No 494
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=91.08 E-value=0.71 Score=50.19 Aligned_cols=19 Identities=42% Similarity=0.518 Sum_probs=16.8
Q ss_pred CCceEEEcCCCCchHHHHH
Q 011553 225 PKGVILYGEPGTGKTLLAK 243 (483)
Q Consensus 225 ~~gvLL~GppGtGKT~Lar 243 (483)
...+++.||+|+|||+.+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp CSCEEEECSSHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 5679999999999999874
No 495
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.06 E-value=0.12 Score=54.58 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=22.1
Q ss_pred CCCceEEEcCCCCchHHHHHHHHHHc
Q 011553 224 PPKGVILYGEPGTGKTLLAKAVANST 249 (483)
Q Consensus 224 ~~~gvLL~GppGtGKT~Laraia~~l 249 (483)
+..-+.|.||+|+|||||+++++..+
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34458899999999999999999744
No 496
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.04 E-value=0.11 Score=52.06 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=21.6
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcC
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
..+.|.||||+|||||+++++....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4488999999999999999997554
No 497
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.99 E-value=0.1 Score=46.07 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|+.++...
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4999999999999999999865
No 498
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=90.97 E-value=1 Score=46.76 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=18.3
Q ss_pred CceEEEcCCCCchHHHHHHHHHH
Q 011553 226 KGVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~ 248 (483)
+.+++.+|+|+|||..+-..+-.
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHH
Confidence 45999999999999876655543
No 499
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.96 E-value=0.12 Score=46.55 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.1
Q ss_pred ceEEEcCCCCchHHHHHHHHHH
Q 011553 227 GVILYGEPGTGKTLLAKAVANS 248 (483)
Q Consensus 227 gvLL~GppGtGKT~Laraia~~ 248 (483)
.|+|.|++|+|||+|+.++...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999999864
No 500
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.94 E-value=0.12 Score=53.81 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=22.2
Q ss_pred CceEEEcCCCCchHHHHHHHHHHcC
Q 011553 226 KGVILYGEPGTGKTLLAKAVANSTS 250 (483)
Q Consensus 226 ~gvLL~GppGtGKT~Laraia~~l~ 250 (483)
..+.|.||+|+|||||+++++....
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 5588999999999999999998653
Done!