BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011555
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 150/251 (59%), Gaps = 3/251 (1%)
Query: 95 LIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEIN 154
L+ D ER DD +LRFL+ARKFD+ AK M+ +WRK++G DTI++DF + E
Sbjct: 40 LLEDAGFIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKP 98
Query: 155 EVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPA 214
+ +YP YH DK+GRPVY E LG V+ +++ +VT+ +R ++ V +E + PA
Sbjct: 99 LIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPA 158
Query: 215 CTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPG 274
C+ AA +++S +I+D++G+ + + + + + I + YPE + + +IINA G
Sbjct: 159 CSRAAGHLVETSCTIMDLKGISISS-AYSVMSYVREASYISQNYYPERMGKFYIINAPFG 217
Query: 275 FRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCAD-QGGCLRS 333
F + K FLDP T SKI +LG+ YQ +LL+ I A LP GG + +GG S
Sbjct: 218 FSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGGKSEVDESKGGLYLS 277
Query: 334 DKGPWQNPEIL 344
D GPW++P+ +
Sbjct: 278 DIGPWRDPKYI 288
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 160/269 (59%), Gaps = 10/269 (3%)
Query: 83 EELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVD 142
E+ +A+ FR S+++++ ER DD +LRFL+ARKFDI+ + M+ E +WR+E+G +
Sbjct: 38 EQEEALLQFR-SILLEKNYKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGAN 95
Query: 143 TIMEDFEF------KEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRY 196
TI+ED+E KE ++ YP YH VDK+GRP+Y E LG ++ K+ ++TT +
Sbjct: 96 TIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFEELGGINLKKMYKITTEKQM 155
Query: 197 IRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDG 256
+R V+ +E + PAC+ A I++S ++LD++G+ L N + + I + I
Sbjct: 156 LRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSN-AYHVLSYIKDVADISQ 214
Query: 257 DNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPE 316
+ YPE + + +II++ GF ++ VK FLDP T SKI +LG+ Y+ +LL+ I LP
Sbjct: 215 NYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPV 274
Query: 317 FLGGTCNCADQGGCL-RSDKGPWQNPEIL 344
GGT + SD GPW++P +
Sbjct: 275 KYGGTSVLHNPNDKFYYSDIGPWRDPRYI 303
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 159/269 (59%), Gaps = 10/269 (3%)
Query: 83 EELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVD 142
E+ +A+ FR S+++++ ER DD +LRFL+ARKFDI+ + M+ E +WR+E+G +
Sbjct: 38 EQEEALLQFR-SILLEKNYKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGAN 95
Query: 143 TIMEDFEF------KEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRY 196
TI+ED+E KE ++ YP YH VDK+GRP+Y LG ++ K+ ++TT +
Sbjct: 96 TIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQM 155
Query: 197 IRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDG 256
+R V+ +E + PAC+ A I++S ++LD++G+ L N + + I + I
Sbjct: 156 LRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSN-AYHVLSYIKDVADISQ 214
Query: 257 DNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPE 316
+ YPE + + +II++ GF ++ VK FLDP T SKI +LG+ Y+ +LL+ I LP
Sbjct: 215 NYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPV 274
Query: 317 FLGGTCNCADQGGCL-RSDKGPWQNPEIL 344
GGT + SD GPW++P +
Sbjct: 275 KYGGTSVLHNPNDKFYYSDIGPWRDPRYI 303
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 124/236 (52%), Gaps = 5/236 (2%)
Query: 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIM 145
+A+ FR++ + D L + D + +LR+L+AR FD+ K++ M + +++RK+ +D I+
Sbjct: 14 EALAKFREN-VQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNII 72
Query: 146 EDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFE 205
++ + Y G G D +G PV+ + +G +D+ L+ + +R ++ E
Sbjct: 73 S---WQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECE 129
Query: 206 KAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQ 265
+ T R +++ T I D +G+GLK+ K A E + +NYPETL +
Sbjct: 130 LLLQ-ECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKR 188
Query: 266 MFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGT 321
+F++ A F + +N +K FL T KI VLG ++ LL+ I ++P GGT
Sbjct: 189 LFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGT 244
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 124/236 (52%), Gaps = 5/236 (2%)
Query: 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIM 145
+A+ FR++ + D L + D + +LR+L+AR FD+ K++ M + +++RK+ +D I+
Sbjct: 14 EALAKFREN-VQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNII 72
Query: 146 EDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFE 205
++ + Y G G D +G PV+ + +G +D+ L+ + +R ++ E
Sbjct: 73 S---WQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECE 129
Query: 206 KAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQ 265
+ T R +++ T I D +G+GLK+ K A E + +NYPETL +
Sbjct: 130 LLLQ-ECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKR 188
Query: 266 MFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGT 321
+F++ A F + +N +K FL T KI VLG ++ LL+ I ++P GGT
Sbjct: 189 LFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGT 244
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 121/236 (51%), Gaps = 5/236 (2%)
Query: 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIM 145
+A+ FR++ + D L + D + +LR+L+AR FD+ K++ + +++RK+ +D I+
Sbjct: 14 EALAKFREN-VQDVLPALPNPDDYFLLRWLRARSFDLQKSEAXLRKHVEFRKQKDIDNII 72
Query: 146 EDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFE 205
++ + Y G G D +G PV+ + +G +D+ L+ + +R + E
Sbjct: 73 S---WQPPEVIQQYLSGGXCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKXRECE 129
Query: 206 KAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQ 265
+ T R +++ T I D +G+GLK+ K A E +NYPETL +
Sbjct: 130 LLLQ-ECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCXFEENYPETLKR 188
Query: 266 MFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGT 321
+F++ A F + +N +K FL T KI VLG ++ LL+ I ++P GGT
Sbjct: 189 LFVVKAPKLFPVAYNLIKPFLSEDTRKKIXVLGANWKEVLLKHISPDQVPVEYGGT 244
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 21/202 (10%)
Query: 110 MMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGV-- 167
+LRFL+AR FD+D A + +WR E I D + I +L GYHGV
Sbjct: 51 FLLRFLRARDFDLDLAWRLLKNYYKWRAE--CPEISADLHPRSIIGLLKA---GYHGVLR 105
Query: 168 --DKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDS 225
D G V I R+ D Y + V V+ + +R +
Sbjct: 106 SRDPTGSKVLIYRIAHWDPK------VFTAYDVFRVSLITSELIVQ----EVETQR--NG 153
Query: 226 STSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSF 285
+I D++G + + + ++ + D++P + + +IN F +++ +K F
Sbjct: 154 IKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPF 213
Query: 286 LDPKTTSKIHVLGNKYQSKLLE 307
L K +IH+ GN Y+ LL+
Sbjct: 214 LTEKIKERIHMHGNNYKQSLLQ 235
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 85/202 (42%), Gaps = 21/202 (10%)
Query: 110 MMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGV-- 167
+LRFL+AR FD+D A + +WR E I D + I +L GYHGV
Sbjct: 35 FLLRFLRARDFDLDLAWRLLKNYYKWRAE--CPEISADLHPRSIIGLLKA---GYHGVLR 89
Query: 168 --DKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDS 225
D G V I R+ D Y + V V+ + +R +
Sbjct: 90 SRDPTGSKVLIYRIAHWDPK------VFTAYDVFRVSLITSELIVQ----EVETQR--NG 137
Query: 226 STSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSF 285
+I D++G + + + ++ + D++P + + +IN F +++ +K F
Sbjct: 138 IKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSXIKPF 197
Query: 286 LDPKTTSKIHVLGNKYQSKLLE 307
L K +IH GN Y+ LL+
Sbjct: 198 LTEKIKERIHXHGNNYKQSLLQ 219
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 110/273 (40%), Gaps = 27/273 (9%)
Query: 77 EDVRDVEEL---QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEML 133
E VR+++E+ QA ++ + E + E+ D LRF++ARKF++ +A + +
Sbjct: 60 EAVRELQEMVQAQAASGEELAVAVAERVQEK--DSGFFLRFIRARKFNVGRAYELLRGYV 117
Query: 134 QWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGV----DKEGRPVYIERLGKVDSNKLMQ 189
+R ++ E F+ V GY GV DK GR V + + S ++
Sbjct: 118 NFRLQYP-----ELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEI-- 170
Query: 190 VTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELIL 249
T D ++ + EK + + I+ I + +G ++ + +
Sbjct: 171 --TFDEILQAYCFILEKLLENE--------ETQINGFCIIENFKGFTMQQAASLRTSDLR 220
Query: 250 RLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEII 309
++ + D++P + I+ F +N VK FL K ++ V G+ S + I
Sbjct: 221 KMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDL-SGFYQEI 279
Query: 310 DARELPEFLGGTCNCADQGGCLRSDKGPWQNPE 342
D LP GGT D GP E
Sbjct: 280 DENILPSDFGGTLPKYDGKAVAEQLFGPQAQAE 312
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 109/271 (40%), Gaps = 23/271 (8%)
Query: 77 EDVRDVEE-LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQW 135
E VR+++E +QA A + L + + D LRF++ARKF++ +A + + +
Sbjct: 60 EAVRELQEXVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNF 119
Query: 136 RKEFGVDTIMEDFEFKEINEVLSYYPHGYHGV----DKEGRPVYIERLGKVDSNKLMQVT 191
R ++ E F+ V GY GV DK GR V + + S ++
Sbjct: 120 RLQYP-----ELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVXLFNIENWQSQEI---- 170
Query: 192 TMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRL 251
T D ++ + EK ++ I I++ Q L+ + + R+ + L
Sbjct: 171 TFDEILQAYCFILEK--LLENEETQINGFCIIENFKGFTXQQAASLR--TSDLRKXVDXL 226
Query: 252 QKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDA 311
Q D++P + I+ F +N VK FL K ++ V G+ S + ID
Sbjct: 227 Q----DSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDL-SGFYQEIDE 281
Query: 312 RELPEFLGGTCNCADQGGCLRSDKGPWQNPE 342
LP GGT D GP E
Sbjct: 282 NILPSDFGGTLPKYDGKAVAEQLFGPQAQAE 312
>pdb|3U7I|A Chain A, The Crystal Structure Of Fmn-Dependent Nadh-Azoreductase 1
(Gbaa0966) From Bacillus Anthracis Str. Ames Ancestor
pdb|3U7I|B Chain B, The Crystal Structure Of Fmn-Dependent Nadh-Azoreductase 1
(Gbaa0966) From Bacillus Anthracis Str. Ames Ancestor
pdb|3U7I|C Chain C, The Crystal Structure Of Fmn-Dependent Nadh-Azoreductase 1
(Gbaa0966) From Bacillus Anthracis Str. Ames Ancestor
pdb|3U7I|D Chain D, The Crystal Structure Of Fmn-Dependent Nadh-Azoreductase 1
(Gbaa0966) From Bacillus Anthracis Str. Ames Ancestor
Length = 223
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 430 YDEYVPMVDKAVDSSWKKQ 448
YD+ VP +DK V S+W+KQ
Sbjct: 50 YDDVVPXIDKTVLSAWEKQ 68
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 36/223 (16%)
Query: 111 MLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHG----YHG 166
LR+L+A K+ + L WR+EFG+ + E+ K ++++ G
Sbjct: 90 FLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILG 149
Query: 167 VDKEGRPVYIERLGKVD---SNKLMQ--VTTMDRYIRYHVQGFEK-AFAVKFPACTIAAK 220
+ + RP+ + G+ + S++ +Q V ++R I + G + A + F K
Sbjct: 150 YENDARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPK 209
Query: 221 RHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWN 280
+ ++ I + GVG +E++ LQ +YPE L + + N L W
Sbjct: 210 --VPGNSKIPPI-GVG--------KEVLHILQT----HYPERLGKALLTNIP---WLAWT 251
Query: 281 TVK---SFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGG 320
+K F+DP T K+ + ++ + EL GG
Sbjct: 252 FLKLIHPFIDPLTREKL-----VFDEPFVKYVPKNELDSLYGG 289
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,378,721
Number of Sequences: 62578
Number of extensions: 609186
Number of successful extensions: 1299
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1269
Number of HSP's gapped (non-prelim): 20
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)