Query 011555
Match_columns 483
No_of_seqs 340 out of 1547
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 10:34:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8g_A CRAL-TRIO domain-contai 100.0 6.4E-57 2.2E-61 458.5 19.9 271 71-345 27-304 (320)
2 1aua_A Phosphatidylinositol tr 100.0 4.7E-56 1.6E-60 445.8 22.0 263 80-345 26-289 (296)
3 1olm_A SEC14-like protein 2; l 100.0 5.4E-47 1.8E-51 395.9 24.8 248 72-326 1-249 (403)
4 3hx3_A Retinaldehyde-binding p 100.0 4.4E-46 1.5E-50 377.9 19.1 236 74-325 46-295 (316)
5 1r5l_A Alpha-TTP, protein (alp 100.0 5.8E-46 2E-50 364.9 16.9 229 80-324 4-235 (262)
6 3pg7_A Neurofibromin; SEC lipi 99.2 2.2E-11 7.6E-16 119.7 5.9 136 157-314 8-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.9 1.3E-09 4.3E-14 109.0 5.4 132 161-314 31-163 (290)
8 2dam_A ETEA protein; KIAA0887, 73.5 12 0.0004 28.6 7.0 45 79-131 13-57 (67)
9 2dal_A Protein KIAA0794; FAS a 63.9 18 0.00061 27.0 6.2 41 81-130 12-52 (62)
10 1v92_A NSFL1 cofactor P47; 3-h 61.2 14 0.00049 25.4 4.9 38 84-130 5-42 (46)
11 2dhy_A CUE domain-containing p 59.4 13 0.00045 28.5 4.7 44 81-132 15-58 (67)
12 1wgl_A TOLL-interacting protei 54.8 13 0.00045 27.7 4.0 38 86-131 11-48 (59)
13 3e21_A HFAF1, FAS-associated f 46.1 42 0.0014 23.6 5.2 37 84-128 5-41 (45)
14 2dah_A Ubiquilin-3; UBA domain 44.1 54 0.0018 23.8 5.8 38 86-132 11-48 (54)
15 1z96_A DNA-damage, UBA-domain 41.0 43 0.0015 22.0 4.6 21 109-129 19-39 (40)
16 1wr1_B Ubiquitin-like protein 40.9 51 0.0017 24.4 5.2 38 85-131 18-55 (58)
17 1ufz_A Hypothetical protein BA 40.9 48 0.0016 26.5 5.3 40 86-132 36-75 (83)
18 2dzl_A Protein FAM100B; UBA-li 38.7 66 0.0023 24.3 5.7 39 83-130 16-54 (66)
19 1vej_A Riken cDNA 4931431F19; 37.9 58 0.002 25.3 5.4 38 85-131 30-67 (74)
20 2dna_A Unnamed protein product 36.5 76 0.0026 24.2 5.7 38 85-131 20-57 (67)
21 2di0_A Activating signal coint 35.7 78 0.0027 24.5 5.7 44 80-131 9-52 (71)
22 2kvs_A Uncharacterized protein 29.2 1.4E+02 0.0049 23.5 6.4 39 86-124 20-58 (80)
23 1otr_A Protein CUE2; protein-p 29.1 80 0.0027 22.5 4.5 24 109-132 21-44 (49)
24 3e3v_A Regulatory protein RECX 27.8 47 0.0016 29.8 3.9 77 50-131 85-162 (177)
25 1oai_A Nuclear RNA export fact 26.5 1.9E+02 0.0066 21.2 7.3 45 80-133 3-47 (59)
26 2bwb_A Ubiquitin-like protein 25.5 74 0.0025 22.2 3.7 25 106-130 20-44 (46)
27 1vdl_A Ubiquitin carboxyl-term 24.4 1.4E+02 0.0047 23.4 5.2 39 84-130 24-62 (80)
28 3dfg_A Xcrecx, regulatory prot 23.8 53 0.0018 29.0 3.4 75 50-130 83-157 (162)
29 2cwb_A Chimera of immunoglobul 23.6 92 0.0031 26.0 4.6 26 106-131 79-104 (108)
30 2jp7_A MRNA export factor MEX6 23.5 2.2E+02 0.0075 20.8 6.1 42 81-131 3-44 (57)
31 2knz_A Ubiquilin-4; cytoplasm, 22.9 90 0.0031 22.3 3.9 25 107-131 25-49 (53)
32 1j3a_A 50S ribosomal protein L 21.7 49 0.0017 29.0 2.6 46 228-305 2-47 (142)
33 1sbo_A Putative anti-sigma fac 20.9 2.8E+02 0.0096 21.3 7.1 50 227-282 46-95 (110)
34 1vq8_J 50S ribosomal protein L 20.7 53 0.0018 28.9 2.6 46 228-305 10-55 (145)
35 2ka5_A Putative anti-sigma fac 20.6 2.6E+02 0.0089 22.7 7.0 51 226-282 53-103 (125)
No 1
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=6.4e-57 Score=458.50 Aligned_cols=271 Identities=36% Similarity=0.633 Sum_probs=246.9
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccch
Q 011555 71 VSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEF 150 (483)
Q Consensus 71 ~~s~~ied~~d~~E~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRk~~~~d~i~~d~~~ 150 (483)
.|++...+ ++++|+++|++||++|++++ ++...|| .+||||||||+||+++|.+||.++++||++++++++..++.+
T Consensus 27 ~~~g~~~~-lt~~q~~~l~~lR~~l~~~~-~~~~~dD-~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~ 103 (320)
T 3q8g_A 27 ALPGTPGN-LTKEQEEALLQFRSILLEKN-YKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYEN 103 (320)
T ss_dssp SCTTSTTC-CCHHHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHH
T ss_pred CCCCCCCC-CCHHHHHHHHHHHHHHHhcC-CCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcccccccccc
Confidence 45544444 47899999999999999988 4566777 599999999999999999999999999999999998876655
Q ss_pred H------HHHHHHhhcCcccccCCCCCCcEEEEEcCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCC
Q 011555 151 K------EINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHID 224 (483)
Q Consensus 151 ~------el~ev~k~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~pa~s~~~~~~i~ 224 (483)
+ +...+.++++++++|+|++||||+|+++|++|++++++.++.+++++++++.+|.+++.++++|+...+..++
T Consensus 104 ~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve 183 (320)
T 3q8g_A 104 NKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIE 183 (320)
T ss_dssp THHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCC
T ss_pred ccccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcc
Confidence 4 4455778999999999999999999999999999988888999999999999999998888888887777899
Q ss_pred CeEEEEeCCCCCCCCCchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhH
Q 011555 225 SSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSK 304 (483)
Q Consensus 225 g~tiIiDl~G~sl~~~~~~~~~~lk~ll~ilq~~YPErL~~i~IVNaP~~f~~lw~ivKpFLdpkTr~KI~f~~~~~~~~ 304 (483)
++++|+|++|+++++++.. +.+++.+++++|++|||||+++||||+|++|+++|++|+|||+++|++||+|+++++.+.
T Consensus 184 ~~~~IiD~~g~sl~~~~~~-~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~ 262 (320)
T 3q8g_A 184 TSCTVLDLKGISLSNAYHV-LSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKE 262 (320)
T ss_dssp CEEEEEECTTCCHHHHHHT-HHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHH
T ss_pred eeEEEEECCCCCHHHHHHH-HHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHH
Confidence 9999999999999998653 788999999999999999999999999999999999999999999999999999888899
Q ss_pred HHcccCCCCCCcccCCCCCCCC-CCCCccCCCCCCCChHHHH
Q 011555 305 LLEIIDARELPEFLGGTCNCAD-QGGCLRSDKGPWQNPEILK 345 (483)
Q Consensus 305 L~e~Id~~~LP~eyGGt~~~~~-~ggc~~~~~gpW~~p~~~k 345 (483)
|.++||+++||++|||+++|.+ +|||+.++.|||+||++++
T Consensus 263 L~~~i~~~~LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~~ 304 (320)
T 3q8g_A 263 LLKQIPIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIG 304 (320)
T ss_dssp HHHHSCGGGSBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTCC
T ss_pred HHhhCChhhCChhhCCCCCCCCCCCCeecCCCCCCCChhhcC
Confidence 9999999999999999999976 7999999999999998876
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=4.7e-56 Score=445.82 Aligned_cols=263 Identities=37% Similarity=0.690 Sum_probs=242.2
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccchHHHHHHHhh
Q 011555 80 RDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSY 159 (483)
Q Consensus 80 ~d~~E~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRk~~~~d~i~~d~~~~el~ev~k~ 159 (483)
++++|+++|++||++|.+++ ++...|| .+||||||||+||+++|.+||.++++||++++++.+..++...+...+.++
T Consensus 26 l~~~q~~~l~~lr~~l~~~~-~~~~~dd-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~ 103 (296)
T 1aua_A 26 LDSAQEKALAELRKLLEDAG-FIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKF 103 (296)
T ss_dssp CCTTHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHhcC-CCCCCch-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHHHHh
Confidence 47788999999999999887 4666777 599999999999999999999999999999999988776654444556788
Q ss_pred cCcccccCCCCCCcEEEEEcCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCeEEEEeCCCCCCCC
Q 011555 160 YPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKN 239 (483)
Q Consensus 160 ~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~pa~s~~~~~~i~g~tiIiDl~G~sl~~ 239 (483)
++++++|+|++||||+|+++|++|++++++.++.+++++++++.+|.+++.++++|+...+.+++++++|+|++|+++++
T Consensus 104 ~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~ 183 (296)
T 1aua_A 104 YPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISS 183 (296)
T ss_dssp SCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHH
T ss_pred CCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHH
Confidence 89999999999999999999999999988888999999999999999999888888877778899999999999999998
Q ss_pred CchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHcccCCCCCCcccC
Q 011555 240 FSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLG 319 (483)
Q Consensus 240 ~~~~~~~~lk~ll~ilq~~YPErL~~i~IVNaP~~f~~lw~ivKpFLdpkTr~KI~f~~~~~~~~L~e~Id~~~LP~eyG 319 (483)
++.. +++++.+++++|+||||||+++||||+|++|+++|++|||||+++|++||+|+++++.+.|.++||+++||++||
T Consensus 184 ~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~yG 262 (296)
T 1aua_A 184 AYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFG 262 (296)
T ss_dssp HHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSBGGGT
T ss_pred HHHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCcHHhC
Confidence 8753 789999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred CCCCCCC-CCCCccCCCCCCCChHHHH
Q 011555 320 GTCNCAD-QGGCLRSDKGPWQNPEILK 345 (483)
Q Consensus 320 Gt~~~~~-~ggc~~~~~gpW~~p~~~k 345 (483)
|+++|.. +|||+.++.|||++|++++
T Consensus 263 G~~~~~~~~~g~~~~~~~~w~~~~~~~ 289 (296)
T 1aua_A 263 GKSEVDESKGGLYLSDIGPWRDPKYIG 289 (296)
T ss_dssp SCBCCCGGGCCSTTCCCSGGGCGGGCC
T ss_pred CCCCCCCCCCCceeCCCCCCCChhhcc
Confidence 9999976 6899999999999998875
No 3
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=5.4e-47 Score=395.88 Aligned_cols=248 Identities=30% Similarity=0.465 Sum_probs=219.0
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhCC-CCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccch
Q 011555 72 SSVSIEDVRDVEELQAVDAFRQSLIMDE-LLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEF 150 (483)
Q Consensus 72 ~s~~ied~~d~~E~~aL~efRe~L~~~~-~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRk~~~~d~i~~d~~~ 150 (483)
|++-..+ ++++|+++|++||++|.+.. ++| ..|| .+||||||||+||+++|.+||.++++||++++++.+.+. ..
T Consensus 1 ~~g~~~~-l~~~q~~~l~~lr~~l~~~~~~l~-~~dD-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~-~~ 76 (403)
T 1olm_A 1 MSGRVGD-LSPRQKEALAKFRENVQDVLPALP-NPDD-YFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISW-QP 76 (403)
T ss_dssp CCSBTTB-CCHHHHHHHHHHHHHHGGGGGGSS-CCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGS-CC
T ss_pred CCCCccC-CCHHHHHHHHHHHHHHHhhccCCC-CCCh-hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCccccc-CC
Confidence 3444444 47899999999999998874 455 4666 589999999999999999999999999999999888763 22
Q ss_pred HHHHHHHhhcCcccccCCCCCCcEEEEEcCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCeEEEE
Q 011555 151 KEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSIL 230 (483)
Q Consensus 151 ~el~ev~k~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~pa~s~~~~~~i~g~tiIi 230 (483)
++ .+.++++++++|+|++||||+|+++|++|++++++..+.+++++++++++|.++..+. .++...+.+++++++|+
T Consensus 77 ~~--~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~-~~s~~~g~~v~~~~~I~ 153 (403)
T 1olm_A 77 PE--VIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECA-HQTTKLGRKVETITIIY 153 (403)
T ss_dssp CH--HHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-HHHHHHTSCCCCEEEEE
T ss_pred HH--HHHHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHH-hhHHhhCCcccceEEEE
Confidence 22 2456778889999999999999999999999988888999999999999999998643 34444556799999999
Q ss_pred eCCCCCCCCCchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHcccC
Q 011555 231 DVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIID 310 (483)
Q Consensus 231 Dl~G~sl~~~~~~~~~~lk~ll~ilq~~YPErL~~i~IVNaP~~f~~lw~ivKpFLdpkTr~KI~f~~~~~~~~L~e~Id 310 (483)
|++|+++++++++.+++++.+++++|+||||||+++||||+|++|.++|+++||||+++|++||+|+++++.+.|.++||
T Consensus 154 D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~ 233 (403)
T 1olm_A 154 DCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHIS 233 (403)
T ss_dssp ECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSC
T ss_pred ECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcC
Confidence 99999999998888999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred CCCCCcccCCCCCCCC
Q 011555 311 ARELPEFLGGTCNCAD 326 (483)
Q Consensus 311 ~~~LP~eyGGt~~~~~ 326 (483)
+++||++|||++++++
T Consensus 234 ~~~LP~~yGG~~~~~~ 249 (403)
T 1olm_A 234 PDQVPVEYGGTMTDPD 249 (403)
T ss_dssp GGGSBGGGTSSBCCTT
T ss_pred hhhCchhhCCCcCCCC
Confidence 9999999999999864
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=4.4e-46 Score=377.94 Aligned_cols=236 Identities=21% Similarity=0.339 Sum_probs=198.9
Q ss_pred ccccCCCCHHH--HHHHHHHHHHHHhCCCCC-----------CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC
Q 011555 74 VSIEDVRDVEE--LQAVDAFRQSLIMDELLP-----------ERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFG 140 (483)
Q Consensus 74 ~~ied~~d~~E--~~aL~efRe~L~~~~~Lp-----------~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRk~~~ 140 (483)
.+.+++++..| +++|++||+||.++++++ .+.|| .+||||||||+||+++|++||.++++||++++
T Consensus 46 ~a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD-~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~ 124 (316)
T 3hx3_A 46 KAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDS-GFFLRFIRARKFNVGRAYELLRGYVNFRLQYP 124 (316)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCc
Confidence 34556654443 689999999999999874 34566 59999999999999999999999999999998
Q ss_pred CCccccccchHHHHHHHhh-cCcccccCCCCCCcEEEEEcCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhh
Q 011555 141 VDTIMEDFEFKEINEVLSY-YPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAA 219 (483)
Q Consensus 141 ~d~i~~d~~~~el~ev~k~-~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~pa~s~~~ 219 (483)
. ++++..++++..+++. ++.+++|+|++||||+|+++|++|++++ +.+++++++++.+|.++.. .
T Consensus 125 ~--~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~----~~~~~~r~~~~~lE~~l~~--------~ 190 (316)
T 3hx3_A 125 E--LFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEI----TFDEILQAYCFILEKLLEN--------E 190 (316)
T ss_dssp G--GTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTS----CHHHHHHHHHHHHHHHTTS--------H
T ss_pred h--hhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCC----CHHHHHHHHHHHHHHHHhc--------c
Confidence 3 3344455666665554 4567899999999999999999999874 8899999999999998753 2
Q ss_pred hCCCCCeEEEEeCCCCCCCCCchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhccEEEeCC
Q 011555 220 KRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGN 299 (483)
Q Consensus 220 ~~~i~g~tiIiDl~G~sl~~~~~~~~~~lk~ll~ilq~~YPErL~~i~IVNaP~~f~~lw~ivKpFLdpkTr~KI~f~~~ 299 (483)
..+++|+++|+|++|++++|+.......++.+++++|++||+||+++||||+|++|.++|+++||||+++|++||+|+++
T Consensus 191 ~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~ 270 (316)
T 3hx3_A 191 ETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGD 270 (316)
T ss_dssp HHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEET
T ss_pred cCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCC
Confidence 34678999999999999998765557889999999999999999999999999999999999999999999999999987
Q ss_pred CchhHHHcccCCCCCCcccCCCCCCC
Q 011555 300 KYQSKLLEIIDARELPEFLGGTCNCA 325 (483)
Q Consensus 300 ~~~~~L~e~Id~~~LP~eyGGt~~~~ 325 (483)
++ +.|.++||+++||++|||++++.
T Consensus 271 ~~-~~L~~~I~~~~LP~eyGG~~~~~ 295 (316)
T 3hx3_A 271 DL-SGFYQEIDENILPSDFGGTLPKY 295 (316)
T ss_dssp CC-HHHHHHSCGGGSBGGGTSSBCCC
T ss_pred CH-HHHHhhCCHhhCcHhhCCCCCCc
Confidence 65 78999999999999999999863
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=5.8e-46 Score=364.92 Aligned_cols=229 Identities=24% Similarity=0.346 Sum_probs=194.4
Q ss_pred CCHHHHHHHHHHHHHHHhCC--CCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccccchHHHHHHH
Q 011555 80 RDVEELQAVDAFRQSLIMDE--LLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVL 157 (483)
Q Consensus 80 ~d~~E~~aL~efRe~L~~~~--~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRk~~~~d~i~~d~~~~el~ev~ 157 (483)
+++.|+++|++||+++.+++ ++|...|| .+||||||||+||+++|.+||.++++||++++. +..+..+.++....
T Consensus 4 ls~~~~~~l~~lr~~l~~~~~~~~~~~~dd-~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~--i~~~~~~~~~~~~~ 80 (262)
T 1r5l_A 4 MSPLLQPGLAALRRRAREAGVPLAPLPLTD-SFLLRFLRARDFDLDLAWRLLKNYYKWRAECPE--ISADLHPRSIIGLL 80 (262)
T ss_dssp -----CTTHHHHHHHHHHHTCCCSSSCCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHH--HHSCCCGGGTHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCcccCCCCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChH--hhhcCChHHHHHHH
Confidence 46788899999999998775 45677777 599999999999999999999999999999962 32333334444444
Q ss_pred hh-cCcccccCCCCCCcEEEEEcCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCeEEEEeCCCCC
Q 011555 158 SY-YPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVG 236 (483)
Q Consensus 158 k~-~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~pa~s~~~~~~i~g~tiIiDl~G~s 236 (483)
+. +..+++|+|++||||+|+++|++|++++ +..++++++++.+|.++.. ...++.|+++|+|++|++
T Consensus 81 ~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~----~~~~~~r~~~~~~E~~~~~--------~~~~~~g~~~I~D~~g~s 148 (262)
T 1r5l_A 81 KAGYHGVLRSRDPTGSKVLIYRIAHWDPKVF----TAYDVFRVSLITSELIVQE--------VETQRNGIKAIFDLEGWQ 148 (262)
T ss_dssp HTTCEEECSSCCTTCCEEEEEEGGGCCTTTS----CHHHHHHHHHHHHHHHTTS--------HHHHHHCEEEEEECTTCC
T ss_pred HcCCccCCCCcCCCCCEEEEEeccccCcccC----CHHHHHHHHHHHHHHHHhC--------hhhcccceEEEEECCCCC
Confidence 43 4556789999999999999999999874 7889999999999987653 123467999999999999
Q ss_pred CCCCchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHcccCCCCCCc
Q 011555 237 LKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPE 316 (483)
Q Consensus 237 l~~~~~~~~~~lk~ll~ilq~~YPErL~~i~IVNaP~~f~~lw~ivKpFLdpkTr~KI~f~~~~~~~~L~e~Id~~~LP~ 316 (483)
++|+.+..+++++.+++++|+||||||+++||||+|++|+++|++++|||+++|++||+|+++++.+.|.++|| ++||+
T Consensus 149 ~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~ 227 (262)
T 1r5l_A 149 FSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPL 227 (262)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCG
T ss_pred HHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcH
Confidence 99987666789999999999999999999999999999999999999999999999999999888899999999 99999
Q ss_pred ccCCCCCC
Q 011555 317 FLGGTCNC 324 (483)
Q Consensus 317 eyGGt~~~ 324 (483)
+|||++..
T Consensus 228 ~yGG~~~~ 235 (262)
T 1r5l_A 228 EYGGEEFS 235 (262)
T ss_dssp GGTCSSCC
T ss_pred hhCCCCCC
Confidence 99999755
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.15 E-value=2.2e-11 Score=119.73 Aligned_cols=136 Identities=14% Similarity=0.160 Sum_probs=110.6
Q ss_pred HhhcCcccccCCCCCCcEEEEEcCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCeEEEEeCCCCC
Q 011555 157 LSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVG 236 (483)
Q Consensus 157 ~k~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~pa~s~~~~~~i~g~tiIiDl~G~s 236 (483)
.+....+..|.|++||||+++.+.+++...+ +++.++.|++..+++.+. ...++|+|+.|++
T Consensus 8 ~~~~ify~~G~d~dGrpViv~~~~~l~~~~~----D~e~Ll~~vl~tl~~~~~--------------~~y~lV~d~T~~~ 69 (256)
T 3pg7_A 8 KTLSIFYQAGTSKAGNPIFYYVARRFKTGQI----NGDLLIYHVLLTLKPYYA--------------KPYEIVVDLTHTG 69 (256)
T ss_dssp HHHTSEEEEEECTTSCEEEEEEGGGCCBTTB----CHHHHHHHHHHHHTTTTT--------------SCEEEEEECTTCC
T ss_pred HHcCCEEEcCcCCCCCEEEEEEeecCCCCCC----CHHHHHHHHHHHHHHhcC--------------CCeEEEEECCCCC
Confidence 3344445568999999999999999988654 788888777776665432 4789999999999
Q ss_pred CCCCchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHH-HHhcCChhhhccEEEeCCCchhHHHcccCCCCC
Q 011555 237 LKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNT-VKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 314 (483)
Q Consensus 237 l~~~~~~~~~~lk~ll~ilq~~YPErL~~i~IVNaP~~f~~lw~i-vKpFLdpkTr~KI~f~~~~~~~~L~e~Id~~~L 314 (483)
..+.+. .+.++.+..++...|...|+++||+|++++|+..|+. .++|.+.+..+|++++++ .++|.++|+.++|
T Consensus 70 ~~n~p~--~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L 144 (256)
T 3pg7_A 70 PSNRFK--TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 144 (256)
T ss_dssp GGGCCC--HHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGC
T ss_pred cccCCc--HHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHc
Confidence 876553 7889999999999999999999999999999977665 466666688899999965 4889999987766
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.87 E-value=1.3e-09 Score=109.03 Aligned_cols=132 Identities=14% Similarity=0.161 Sum_probs=99.1
Q ss_pred CcccccCCCCCCcEEEEEcCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCeEEEEeCCCCCCCCC
Q 011555 161 PHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNF 240 (483)
Q Consensus 161 p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~pa~s~~~~~~i~g~tiIiDl~G~sl~~~ 240 (483)
..+..|.|++||||+++.+.+++...+ +++.++-|++..++..+ -...++|+|+.+++..+-
T Consensus 31 ~f~~~g~d~dG~PViv~~~~~~~~~~~----D~e~Lly~il~tl~~~~--------------~~~y~lV~D~T~~~~~n~ 92 (290)
T 3peg_A 31 IFYQAGTSKAGNPIFYYVARRFKTGQI----NGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPSNR 92 (290)
T ss_dssp TEEEEEECTTSCEEEEEEGGGCCBTTB----CHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGGGC
T ss_pred eEEEeccCCCCCEEEEEEeecCCccCC----CHHHHHHHHHHHHHHhc--------------CCCeEEEEEcCCCCccCC
Confidence 334458899999999999999987654 78877777766665443 247899999999998765
Q ss_pred chhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHH-HHHHhcCChhhhccEEEeCCCchhHHHcccCCCCC
Q 011555 241 SKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLW-NTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 314 (483)
Q Consensus 241 ~~~~~~~lk~ll~ilq~~YPErL~~i~IVNaP~~f~~lw-~ivKpFLdpkTr~KI~f~~~~~~~~L~e~Id~~~L 314 (483)
+. .+.++.+..++...|+..|+++||+|++++|+..+ ...++|...+..+|+.++... ..|.++++.+++
T Consensus 93 p~--~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~--~~L~~~i~~~~~ 163 (290)
T 3peg_A 93 FK--TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP--GKLAEHIEHEQQ 163 (290)
T ss_dssp CC--HHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSS--CC----------
T ss_pred Ch--HHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCH--HHHHhhCCHHHh
Confidence 43 78999999999999999999999999999998754 566788888889999998653 458888887754
No 8
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.53 E-value=12 Score=28.64 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011555 79 VRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (483)
Q Consensus 79 ~~d~~E~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (483)
.++..+.+.|.+|..... ..|......||.+.+||++.|+..+-+
T Consensus 13 ~Ls~~~~e~i~qF~~ITg--------~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 13 DLTQEQTEKLLQFQDLTG--------IESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp CCCHHHHHHHHHHHHHHC--------CSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hcChhHHHHHHHHHHHhC--------CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456777889999998872 124457899999999999999887753
No 9
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.86 E-value=18 Score=27.04 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 011555 81 DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (483)
Q Consensus 81 d~~E~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~ 130 (483)
...+.+.|.+|..... .+ ......||.+.+||++.|+..+-
T Consensus 12 s~~~~e~i~qF~~iTg--------~~-~~~A~~~Le~~~WnLe~Av~~ff 52 (62)
T 2dal_A 12 SSALKGLIQQFTTITG--------AS-ESVGKHMLEACNNNLEMAVTMFL 52 (62)
T ss_dssp CHHHHHHHHHHHHHTC--------CC-HHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhC--------CC-HHHHHHHHHHcCCCHHHHHHHHH
Confidence 5666778999987652 12 35789999999999999998763
No 10
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=61.24 E-value=14 Score=25.40 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 011555 84 ELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (483)
Q Consensus 84 E~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~ 130 (483)
+.+.|.+|..... .+ ......||.+.+||++.|+..+-
T Consensus 5 ~~~~i~~F~~iTg--------~~-~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 5 RQDALREFVAVTG--------AE-EDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp HHHHHHHHHHHTC--------CC-HHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHHHhC--------cC-HHHHHHHHHHcCCCHHHHHHHHH
Confidence 4567888886641 12 35789999999999999988763
No 11
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.35 E-value=13 Score=28.46 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011555 81 DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (483)
Q Consensus 81 d~~E~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~ 132 (483)
..+..+++++|++.. | ..|. ..+..-|++++.|++.|++.|.++
T Consensus 15 ~~~~~~~v~~L~~MF------P-~lD~-~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 15 RLEFNQAMDDFKTMF------P-NMDY-DIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCSHHHHHHHHHHC------S-SSCH-HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHC------C-CCCH-HHHHHHHHHcCCCHHHHHHHHHhc
Confidence 344557788888775 2 2344 578899999999999999988654
No 12
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=54.79 E-value=13 Score=27.67 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011555 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (483)
Q Consensus 86 ~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (483)
+.|++|++.. | ..|. ..+-.-|++++.|++.|+.+|.+
T Consensus 11 e~l~~L~emF------P-~ld~-~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 11 EDLKAIQDMF------P-NMDQ-EVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHC------S-SSCH-HHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHC------C-CCCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 5667777654 3 2444 57899999999999999999864
No 13
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=46.06 E-value=42 Score=23.61 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHH
Q 011555 84 ELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHM 128 (483)
Q Consensus 84 E~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~ 128 (483)
..+.|.+|.+.-- .+|......||.+.+||++.|+..
T Consensus 5 ~de~ia~F~~iTG--------~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 5 REMILADFQACTG--------IENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHHC--------CCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHHC--------CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 4578888888652 345346889999999999999753
No 14
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=44.12 E-value=54 Score=23.77 Aligned_cols=38 Identities=18% Similarity=0.084 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011555 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (483)
Q Consensus 86 ~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~ 132 (483)
+.|++|++.= ..|.+..++-|++.++|+++|++.|...
T Consensus 11 ~~l~~L~~MG---------F~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSMG---------FLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHT---------CCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcC---------CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4566666542 3343456899999999999999988653
No 15
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=40.98 E-value=43 Score=22.00 Aligned_cols=21 Identities=24% Similarity=0.137 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 011555 109 HMMLRFLKARKFDIDKAKHMW 129 (483)
Q Consensus 109 ~~LLRFLrArkfDvekA~k~l 129 (483)
+...+.|+++++|++.|...|
T Consensus 19 ~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 19 LEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 457899999999999998765
No 16
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=40.93 E-value=51 Score=24.35 Aligned_cols=38 Identities=8% Similarity=-0.008 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011555 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (483)
Q Consensus 85 ~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (483)
.+.|++|++.= ..|.+..++-|++.++|+++|++.|..
T Consensus 18 ~~qi~~L~~MG---------F~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDMG---------FFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 35566666542 234356799999999999999998764
No 17
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=40.89 E-value=48 Score=26.46 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011555 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (483)
Q Consensus 86 ~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~ 132 (483)
..|+++|..|-. ...| ..|.+-....+||+++|+..+-+-
T Consensus 36 SCLd~iR~VlGd------sV~e-~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 36 SCLDHMREVLGD------AVPD-DILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHTTT------TSCH-HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc------cCCH-HHHHHHHHHhcCCHHHHHHHHHhc
Confidence 578889988832 3345 468899999999999999987643
No 18
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.74 E-value=66 Score=24.28 Aligned_cols=39 Identities=10% Similarity=0.107 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 011555 83 EELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (483)
Q Consensus 83 ~E~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~ 130 (483)
.+.+.|.+|...-. .+......||.+.+||++.|+..+-
T Consensus 16 ~~q~~i~qF~~iTg---------~~~~~A~~~Le~~~WdLe~Al~~ff 54 (66)
T 2dzl_A 16 RHQVMINQFVLAAG---------CAADQAKQLLQAAHWQFETALSTFF 54 (66)
T ss_dssp HHHHHHHHHHHHHC---------CCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHcC---------CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33367888887652 1235789999999999999988763
No 19
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=37.86 E-value=58 Score=25.31 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011555 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (483)
Q Consensus 85 ~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (483)
++.|++|++.= ..|.+..++-|++.++|+++|++.|..
T Consensus 30 e~qi~qL~eMG---------F~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKALG---------FANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 35566666542 234356799999999999999988753
No 20
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=36.53 E-value=76 Score=24.21 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011555 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (483)
Q Consensus 85 ~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (483)
..+|++|++.= ..|.+.-++-|++.+.|+++|++.|..
T Consensus 20 ~~ql~qL~~MG---------F~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 20 SKEMECLQAMG---------FVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 45666666542 244456699999999999999988764
No 21
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=35.72 E-value=78 Score=24.47 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011555 80 RDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (483)
Q Consensus 80 ~d~~E~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (483)
..++-...|.++++.+ |. ..+ .++.+.|..++.|+|.++..|-+
T Consensus 9 ~~~~l~s~I~qV~DLf------Pd-LG~-gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 9 CGVELDSLISQVKDLL------PD-LGE-GFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SSHHHHHHHHHHHHHC------CS-SCH-HHHHHHHHHTTTCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHc------cc-CCH-HHHHHHHHHhCCCHHHHHHHHHc
Confidence 3566678888888776 33 344 47999999999999999988754
No 22
>2kvs_A Uncharacterized protein MW0776; PSI-2, NESG, BIG target, structural genomics, protein structure initiative; NMR {Staphylococcus aureus}
Probab=29.20 E-value=1.4e+02 Score=23.50 Aligned_cols=39 Identities=8% Similarity=0.174 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHH
Q 011555 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDK 124 (483)
Q Consensus 86 ~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvek 124 (483)
.-+.+|-+++..+..+|..-+|++.|.+||....+|-+.
T Consensus 20 dp~g~LA~~i~~D~~FPK~~~d~~eIs~Yle~~~~~~~~ 58 (80)
T 2kvs_A 20 TPFGILAEHVSEDKAFPRLEERHQVIRAYVMSNYTDHQL 58 (80)
T ss_dssp CHHHHHHHHHHTSCCCCSSCSSSHHHHHHHHHHCCCHHH
T ss_pred ChHHHHHHHHhhCcCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 457788899988889999889999999999998888553
No 23
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=29.05 E-value=80 Score=22.54 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=21.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Q 011555 109 HMMLRFLKARKFDIDKAKHMWAEM 132 (483)
Q Consensus 109 ~~LLRFLrArkfDvekA~k~l~~~ 132 (483)
..+-+.|.++++|++.|.++|.+.
T Consensus 21 ~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 21 SKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhc
Confidence 468899999999999999998764
No 24
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=27.79 E-value=47 Score=29.80 Aligned_cols=77 Identities=13% Similarity=0.057 Sum_probs=39.8
Q ss_pred hcchhhhhhhcccCCCCCCCccccccccCCCCHHHHHHHHH-HHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHH
Q 011555 50 ASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDA-FRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHM 128 (483)
Q Consensus 50 ~s~~~~~s~~k~~~~~~~~~~~~s~~ied~~d~~E~~aL~e-fRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~ 128 (483)
-..+++.-|+.|| - ...+..-.++++.++++.+...+ ++..+......+ ......-+.+||..++|+.+.+...
T Consensus 85 G~~~I~~eL~~KG---I-~~~~I~~al~~~~~~de~e~a~~l~~Kk~~~~~~~~-~~~~~~K~~~~L~rrGF~~~~I~~v 159 (177)
T 3e3v_A 85 GPKVIKLNLSKKG---I-DDNIAEDALILYTDKLQVEKGVTLAEKLANRYSHDS-YRNKQNKIKQSLLTKGFSYDIIDTI 159 (177)
T ss_dssp CHHHHHHHHHTTT---C-CHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cHHHHHHHHHHcC---C-CHHHHHHHHHhCCchhHHHHHHHHHHHHHhhccCCC-hHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 3455777777776 2 22222223344433344333333 333332221111 0111235889999999999988877
Q ss_pred HHH
Q 011555 129 WAE 131 (483)
Q Consensus 129 l~~ 131 (483)
+.+
T Consensus 160 l~~ 162 (177)
T 3e3v_A 160 IQE 162 (177)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 25
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=26.47 E-value=1.9e+02 Score=21.19 Aligned_cols=45 Identities=11% Similarity=0.187 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011555 80 RDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEML 133 (483)
Q Consensus 80 ~d~~E~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~l 133 (483)
+++++++.|.+|.+.-. .+- ++-.++|...+||.++|.+.+.+..
T Consensus 3 ls~~q~~mv~~~s~~Tg--------mn~-~~s~~cL~~~~Wd~~~A~~~F~~l~ 47 (59)
T 1oai_A 3 LSPEQQEMLQAFSTQSG--------MNL-EWSQKCLQDNNWDYTRSAQAFTHLK 47 (59)
T ss_dssp CCHHHHHHHHHHHHHHC--------CCH-HHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC--------CCH-HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 56777888888887652 222 5789999999999999999887644
No 26
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=25.46 E-value=74 Score=22.17 Aligned_cols=25 Identities=12% Similarity=0.017 Sum_probs=20.3
Q ss_pred CcHHHHHHHHHHcCCCHHHHHHHHH
Q 011555 106 DDYHMMLRFLKARKFDIDKAKHMWA 130 (483)
Q Consensus 106 dD~~~LLRFLrArkfDvekA~k~l~ 130 (483)
.|.+..++-|++.++|+++|++.|-
T Consensus 20 ~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 20 FDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3434579999999999999998774
No 27
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.38 E-value=1.4e+02 Score=23.37 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 011555 84 ELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (483)
Q Consensus 84 E~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~ 130 (483)
.+..|++||+.- -.+|..+|.--|.|.+.|+..|+.+|.
T Consensus 24 ~q~lLnQLrEIT--------GiqD~~~L~~ALkas~Gdl~~AV~~LT 62 (80)
T 1vdl_A 24 QQTFLNQLREIT--------GINDAQILQQALKDSNGNLELAVAFLT 62 (80)
T ss_dssp HHHHHHHHHHHS--------CCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHhccCCHHHHHHHHh
Confidence 345788888775 246778899999999999999998885
No 28
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=23.83 E-value=53 Score=28.97 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=38.5
Q ss_pred hcchhhhhhhcccCCCCCCCccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 011555 50 ASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMW 129 (483)
Q Consensus 50 ~s~~~~~s~~k~~~~~~~~~~~~s~~ied~~d~~E~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l 129 (483)
-..++++.|+.|| - ...+..-.++++.+++...+...++..+.. ..+.......-+.+||..++|+.+.+...+
T Consensus 83 G~~~I~~eL~~KG---I-~~~~I~~al~~~~~de~e~a~~l~~Kk~~~--~~~~~~~~k~K~~~~L~rrGF~~~~I~~~l 156 (162)
T 3dfg_A 83 GPLHIRAELGTHG---L-DSDAVSAAMATFEGDWTENALDLIRRRFGE--DGPVDLAQRRKAADLLARRGFDGNSIRLAT 156 (162)
T ss_dssp CHHHHHHHHHHTT---C-CHHHHHHHHTTCCSCHHHHHHHHHHHHHCT--TCCCSHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred cHHHHHHHHHHcC---C-CHHHHHHHHHhCcHhHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 3456778888777 2 222222233443222223333333433321 112111222458899999999998877665
Q ss_pred H
Q 011555 130 A 130 (483)
Q Consensus 130 ~ 130 (483)
.
T Consensus 157 ~ 157 (162)
T 3dfg_A 157 R 157 (162)
T ss_dssp T
T ss_pred h
Confidence 4
No 29
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=23.58 E-value=92 Score=25.99 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=21.6
Q ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011555 106 DDYHMMLRFLKARKFDIDKAKHMWAE 131 (483)
Q Consensus 106 dD~~~LLRFLrArkfDvekA~k~l~~ 131 (483)
.|.+..++-|++.++|+++|++.|..
T Consensus 79 ~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 79 QDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34346899999999999999998864
No 30
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=23.46 E-value=2.2e+02 Score=20.81 Aligned_cols=42 Identities=5% Similarity=0.125 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011555 81 DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (483)
Q Consensus 81 d~~E~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (483)
++.+++.|.+|...-. .+- ++-..+|...+||.++|.+.+.+
T Consensus 3 ~~~q~~mv~~~s~~T~--------Mn~-e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 3 NPVQLELLNKLHLETK--------LNA-EYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp CHHHHHHHHHHHHHHC--------SCH-HHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC--------CCH-HHHHHHHHHcCCCHHHHHHHHHH
Confidence 5677778888876652 222 57899999999999999999877
No 31
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=22.95 E-value=90 Score=22.30 Aligned_cols=25 Identities=24% Similarity=0.078 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHcCCCHHHHHHHHHH
Q 011555 107 DYHMMLRFLKARKFDIDKAKHMWAE 131 (483)
Q Consensus 107 D~~~LLRFLrArkfDvekA~k~l~~ 131 (483)
|.+..++-|+++++|+++|++.|..
T Consensus 25 ~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 25 NREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3356799999999999999988754
No 32
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=21.74 E-value=49 Score=29.00 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=31.3
Q ss_pred EEEeCCCCCCCCCchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHH
Q 011555 228 SILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKL 305 (483)
Q Consensus 228 iIiDl~G~sl~~~~~~~~~~lk~ll~ilq~~YPErL~~i~IVNaP~~f~~lw~ivKpFLdpkTr~KI~f~~~~~~~~L 305 (483)
+|||.+|..+..+. ..+.++|. .=..|+|||+ +||.|-|+++...+
T Consensus 2 ~viDA~g~~LGRLA-------s~vAk~L~-----~Gd~VVViNa--------------------eki~iTG~k~~~K~ 47 (142)
T 1j3a_A 2 RIINADGLILGRLA-------SRVAKMLL-----EGEEVVIVNA--------------------EKAVITGNREVIFS 47 (142)
T ss_dssp EEEECTTBBHHHHH-------HHHHHHHH-----TTCCEEEECG--------------------GGCEEESCHHHHHH
T ss_pred EEEeCCCCchHHHH-------HHHHHHHh-----cCCEEEEEeC--------------------eeeEecccHHhhee
Confidence 58999998775433 22333333 4567999998 78999998765544
No 33
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=20.88 E-value=2.8e+02 Score=21.28 Aligned_cols=50 Identities=8% Similarity=0.090 Sum_probs=35.7
Q ss_pred EEEEeCCCCCCCCCchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHH
Q 011555 227 TSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTV 282 (483)
Q Consensus 227 tiIiDl~G~sl~~~~~~~~~~lk~ll~ilq~~YPErL~~i~IVNaP~~f~~lw~iv 282 (483)
.+|+|+++++. ++...+..+..+.+.++. +=..+.++|++.-+.-++.+.
T Consensus 46 ~vvlDls~v~~--iDssgl~~L~~~~~~~~~----~g~~l~l~~~~~~v~~~l~~~ 95 (110)
T 1sbo_A 46 KIVLDLSSVSY--MDSAGLGTLVVILKDAKI----NGKEFILSSLKESISRILKLT 95 (110)
T ss_dssp EEEEECTTCCC--BCHHHHHHHHHHHHHHHH----TTCEEEEESCCHHHHHHHHHT
T ss_pred EEEEECCCCcE--EccHHHHHHHHHHHHHHH----cCCEEEEEeCCHHHHHHHHHh
Confidence 57999999884 565567777666665543 346789999988777776653
No 34
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=20.66 E-value=53 Score=28.90 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=31.5
Q ss_pred EEEeCCCCCCCCCchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHH
Q 011555 228 SILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKL 305 (483)
Q Consensus 228 iIiDl~G~sl~~~~~~~~~~lk~ll~ilq~~YPErL~~i~IVNaP~~f~~lw~ivKpFLdpkTr~KI~f~~~~~~~~L 305 (483)
+|||.+|..+..+. ..+.++|. .=..|+|||+ +||.|-|+++...+
T Consensus 10 ~viDA~g~~LGRLA-------s~vAk~L~-----~Gd~VVViNa--------------------eki~iTG~k~~~K~ 55 (145)
T 1vq8_J 10 VIVDARDCIMGRVA-------SQVAEQAL-----DGETVAVVNA--------------------ERAVITGREEQIVE 55 (145)
T ss_dssp EEEECTTBBHHHHH-------HHHHHHHH-----TTCCEEEECG--------------------GGCEEESCHHHHHH
T ss_pred EEEeCCCCchHHHH-------HHHHHHHh-----cCCEEEEEeC--------------------EeeEecchhhhhee
Confidence 68899998775433 23333333 4567999998 78999998765544
No 35
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=20.57 E-value=2.6e+02 Score=22.74 Aligned_cols=51 Identities=8% Similarity=0.038 Sum_probs=37.1
Q ss_pred eEEEEeCCCCCCCCCchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHH
Q 011555 226 STSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTV 282 (483)
Q Consensus 226 ~tiIiDl~G~sl~~~~~~~~~~lk~ll~ilq~~YPErL~~i~IVNaP~~f~~lw~iv 282 (483)
-.+|+|+++++. ++...+..+..+.+.++. +=.++.++|++.-++-++.+.
T Consensus 53 ~~vvlDls~V~~--iDSsGl~~L~~~~~~~~~----~g~~l~l~~~~~~v~~~l~~~ 103 (125)
T 2ka5_A 53 NKIFLVLSDVES--IDSFSLGVIVNILKSISS----SGGFFALVSPNEKVERVLSLT 103 (125)
T ss_dssp CEEEEECTTCSC--CCHHHHHHHHHHHHHHHH----HTCEEEEECCCHHHHHHHHHT
T ss_pred CEEEEECCCCCE--EcHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHHHHHHHHc
Confidence 468999999885 555566776666665543 347899999998887777654
Done!