Query 011555
Match_columns 483
No_of_seqs 340 out of 1547
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 10:34:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011555.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011555hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1auaa2 c.13.1.1 (A:97-299) C- 100.0 3.5E-40 2.5E-44 311.0 14.9 190 155-345 6-196 (203)
2 d1olma3 c.13.1.1 (A:76-274) Su 100.0 2.5E-37 1.8E-41 291.2 16.8 175 156-331 5-180 (199)
3 d1r5la2 c.13.1.1 (A:91-275) Al 100.0 2.3E-31 1.7E-35 246.9 12.2 155 157-324 7-161 (185)
4 d1olma1 a.5.3.1 (A:1-75) Super 99.6 1.8E-15 1.3E-19 119.9 8.4 72 72-145 1-72 (75)
5 d1auaa1 a.5.3.1 (A:4-96) N-ter 99.5 4.3E-14 3.1E-18 116.3 7.4 74 72-148 19-92 (93)
6 d1r5la1 a.5.3.1 (A:25-90) Alph 99.3 1.8E-12 1.3E-16 99.7 5.6 55 86-141 2-58 (66)
7 d1v92a_ a.5.2.3 (A:) NSFL1 (p9 65.8 6.6 0.00048 26.1 5.5 40 82-130 3-42 (46)
8 d2daha1 a.5.2.1 (A:8-48) Ubiqu 50.8 20 0.0015 23.1 5.8 26 106-131 15-40 (41)
9 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 50.8 27 0.002 23.5 6.6 38 85-131 9-46 (50)
10 d1wgla_ a.5.2.4 (A:) Toll-inte 50.2 8.3 0.00061 27.1 4.0 38 86-131 11-48 (59)
11 d2bwba1 a.5.2.1 (A:328-371) DS 44.8 18 0.0013 23.8 4.8 25 106-130 18-42 (44)
12 d1mn3a_ a.5.2.4 (A:) Vacuolar 43.9 5.6 0.00041 27.5 2.1 43 82-132 10-52 (54)
13 d1ufza_ a.5.9.1 (A:) HBS1-like 33.8 34 0.0025 25.3 5.3 40 85-131 35-74 (83)
14 d2ch5a2 c.55.1.5 (A:1-117) N-a 33.1 93 0.0068 23.5 9.2 88 167-271 20-107 (117)
15 d1vdla_ a.5.2.1 (A:) Ubiquitin 31.8 40 0.0029 24.5 5.2 39 84-130 24-62 (80)
16 d2o6ka1 a.60.15.1 (A:4-73) Unc 31.2 84 0.0061 22.4 7.5 51 87-137 16-69 (70)
17 d1veja1 a.5.2.1 (A:8-68) 49314 30.7 47 0.0034 23.2 5.4 37 85-130 23-59 (61)
18 d1wgna_ a.5.2.1 (A:) Ubiquitin 28.3 87 0.0063 21.6 6.8 42 81-132 16-57 (63)
19 d1oaia_ a.5.2.3 (A:) FG-bindin 23.0 1.1E+02 0.0079 20.9 7.3 44 80-132 3-46 (59)
20 d1n8fa_ c.1.10.4 (A:) 3-deoxy- 22.6 49 0.0035 30.8 5.5 89 159-259 197-286 (343)
No 1
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=3.5e-40 Score=311.01 Aligned_cols=190 Identities=36% Similarity=0.686 Sum_probs=177.4
Q ss_pred HHHhhcCcccccCCCCCCcEEEEEcCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCeEEEEeCCC
Q 011555 155 EVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQG 234 (483)
Q Consensus 155 ev~k~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~pa~s~~~~~~i~g~tiIiDl~G 234 (483)
.+.++||+++||+|++||||+|+++|++|+.++++..+.+++++++++.+|.+++...+.++.....+++++++|+|++|
T Consensus 6 ~~~~~~p~~~~G~Dk~GrpV~~~r~g~~~~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~v~~~i~IiD~~g 85 (203)
T d1auaa2 6 LIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKG 85 (203)
T ss_dssp HHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTT
T ss_pred HHHHHCCCcCCCCCCCCCEEEEEECCCCChHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCccceEEEEEECCC
Confidence 36789999999999999999999999999999999999999999999999999988777776667788999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHcccCCCCC
Q 011555 235 VGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 314 (483)
Q Consensus 235 ~sl~~~~~~~~~~lk~ll~ilq~~YPErL~~i~IVNaP~~f~~lw~ivKpFLdpkTr~KI~f~~~~~~~~L~e~Id~~~L 314 (483)
++++++.. ...+++.+++++|++||++++++||||+|++|+++|+++++||+++|++||+|+++++.+.|.++||+++|
T Consensus 86 ~s~~~~~~-~~~~~k~~~~~~q~~yPe~l~~i~ivN~P~~~~~~~~~vk~fl~~~t~~KI~~~~~~~~~~L~~~id~~~L 164 (203)
T d1auaa2 86 ISISSAYS-VMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENL 164 (203)
T ss_dssp CCHHHHHH-HHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSS
T ss_pred CChHHhhh-HHHHHHHHHHHHHHhChHhhcceEEECCcHHHHHHHHHHHhhcCHHHhhceeecCCCCHHHHHhhCCHhhC
Confidence 99998864 46889999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred CcccCCCCCCCC-CCCCccCCCCCCCChHHHH
Q 011555 315 PEFLGGTCNCAD-QGGCLRSDKGPWQNPEILK 345 (483)
Q Consensus 315 P~eyGGt~~~~~-~ggc~~~~~gpW~~p~~~k 345 (483)
|++|||+|+|++ .|+|+..+.|||+||+++.
T Consensus 165 P~~~GG~~~~~~~~g~~~~~~~~~~~~p~~~~ 196 (203)
T d1auaa2 165 PVKFGGKSEVDESKGGLYLSDIGPWRDPKYIG 196 (203)
T ss_dssp BGGGTSCBCCCGGGCCSTTCCCSGGGCGGGCC
T ss_pred hHHhCCCCcCCCCCCCccccCCCCCCChhhcC
Confidence 999999999975 4999999999999998764
No 2
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2.5e-37 Score=291.22 Aligned_cols=175 Identities=29% Similarity=0.472 Sum_probs=160.9
Q ss_pred HHhhcCcccccCCCCCCcEEEEEcCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCeEEEEeCCCC
Q 011555 156 VLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGV 235 (483)
Q Consensus 156 v~k~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~pa~s~~~~~~i~g~tiIiDl~G~ 235 (483)
+.+++|+++||+|++||||+|+++|++|++++.+..+.+++++++++.+|.+++.+..++ ...+++++++++|+|++|+
T Consensus 5 i~~~~p~~~~G~Dk~Grpv~~~r~g~~d~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~-~~~~~~v~~~~~I~Dl~g~ 83 (199)
T d1olma3 5 IQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQT-TKLGRKVETITIIYDCEGL 83 (199)
T ss_dssp HHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH-HHHTSCCCCEEEEEECTTC
T ss_pred HHHHCCCccccCCCCCCEEEEEecccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH-HhcCCccceEEEEEECCCC
Confidence 678999999999999999999999999999999889999999999999999998654433 3456789999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHcccCCCCCC
Q 011555 236 GLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELP 315 (483)
Q Consensus 236 sl~~~~~~~~~~lk~ll~ilq~~YPErL~~i~IVNaP~~f~~lw~ivKpFLdpkTr~KI~f~~~~~~~~L~e~Id~~~LP 315 (483)
+++++++..+++++.++.++|++|||||+++||||+|++|+++|+++|+||+++|++||+|+++++.+.|.++|++++||
T Consensus 84 s~~~~~~~~~~~l~~~~~~~q~~YPerl~~i~iiN~P~~f~~~w~ivk~fl~~~t~~KI~~~~~~~~~~L~~~i~~~~lP 163 (199)
T d1olma3 84 GLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVP 163 (199)
T ss_dssp CGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSB
T ss_pred chhhhccccHHHHHHHHHHHHHHHHHhhhheEEECCCHHHHHHHHHHHHhcCHHhhccEEEeCCCCHHHHHHhCCHhhCC
Confidence 99999988899999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred cccCCCCCCCC-CCCCc
Q 011555 316 EFLGGTCNCAD-QGGCL 331 (483)
Q Consensus 316 ~eyGGt~~~~~-~ggc~ 331 (483)
++|||+|+|++ +++|.
T Consensus 164 ~~yGGt~~~~~~~~~~~ 180 (199)
T d1olma3 164 VEYGGTMTDPDGNPKCK 180 (199)
T ss_dssp GGGTSSBCCTTCCTTCT
T ss_pred HHhCCCCCCCCCChhhh
Confidence 99999999865 23443
No 3
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.97 E-value=2.3e-31 Score=246.90 Aligned_cols=155 Identities=21% Similarity=0.269 Sum_probs=138.3
Q ss_pred HhhcCcccccCCCCCCcEEEEEcCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCeEEEEeCCCCC
Q 011555 157 LSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVG 236 (483)
Q Consensus 157 ~k~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~pa~s~~~~~~i~g~tiIiDl~G~s 236 (483)
...++.+++|+|++||||+++++|++|++++ +.+++++++++.+|.++.. ...+++|+++|+|++|++
T Consensus 7 ~~g~~~~lp~rD~~Gr~v~~~r~~~~d~~~~----~~~~~~r~~~~~~e~~~~~--------~~~~~~g~~~I~D~~g~s 74 (185)
T d1r5la2 7 KAGYHGVLRSRDPTGSKVLIYRIAHWDPKVF----TAYDVFRVSLITSELIVQE--------VETQRNGIKAIFDLEGWQ 74 (185)
T ss_dssp HTTCEEECSSCCTTCCEEEEEEGGGCCTTTS----CHHHHHHHHHHHHHHHTTS--------HHHHHHCEEEEEECTTCC
T ss_pred HcCCceecCCCCcCcCEEEEEEcccCCCCCC----CHHHHHHHHHHHHHHHHhc--------cccCCceEEEEEECCCCC
Confidence 3445666899999999999999999999874 8899999999999987653 233567999999999999
Q ss_pred CCCCchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhccEEEeCCCchhHHHcccCCCCCCc
Q 011555 237 LKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPE 316 (483)
Q Consensus 237 l~~~~~~~~~~lk~ll~ilq~~YPErL~~i~IVNaP~~f~~lw~ivKpFLdpkTr~KI~f~~~~~~~~L~e~Id~~~LP~ 316 (483)
++++.+..+++++.+++++|++||+|++++||||+|++|+++|+++|+||+++|++||+|+++++ +.+..++++++||+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~q~~yP~rl~~i~ivn~P~~~~~~~~~vk~fl~~k~~~Ki~~~~~~~-~~~~~~~~~~~LP~ 153 (185)
T d1r5la2 75 FSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNY-KQSLLQHFPDILPL 153 (185)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSC-HHHHHHHSTTTSCG
T ss_pred HHHhhhccHHHHHHHHHHHHhhCchhhheeEEEcCCHHHHHHHHHHHHhccHHHHhheEEeccch-HHHHhhcCHHhCCH
Confidence 99987777899999999999999999999999999999999999999999999999999998776 56777788999999
Q ss_pred ccCCCCCC
Q 011555 317 FLGGTCNC 324 (483)
Q Consensus 317 eyGGt~~~ 324 (483)
+|||+++.
T Consensus 154 ~~GG~~~~ 161 (185)
T d1r5la2 154 EYGGEEFS 161 (185)
T ss_dssp GGTCSSCC
T ss_pred hcCCCCCC
Confidence 99999754
No 4
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.58 E-value=1.8e-15 Score=119.86 Aligned_cols=72 Identities=28% Similarity=0.452 Sum_probs=62.3
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccc
Q 011555 72 SSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIM 145 (483)
Q Consensus 72 ~s~~ied~~d~~E~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRk~~~~d~i~ 145 (483)
||+.+.++ +++|+++|++||+++.........+|| .+||||||||+||+++|.+||.+|++||+++++|+|+
T Consensus 1 m~g~~gel-t~~q~~~l~elr~~l~~~~~~~~~~dd-~~LlRFLrAr~fdv~kA~~ml~~~l~WR~~~~vD~Il 72 (75)
T d1olma1 1 MSGRVGDL-SPRQKEALAKFRENVQDVLPALPNPDD-YFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNII 72 (75)
T ss_dssp CCSBTTBC-CHHHHHHHHHHHHHHGGGGGGSSCCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGG
T ss_pred CCCCcccC-CHHHHHHHHHHHHHHHhhcccCCCCCH-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHcCchhhh
Confidence 66767776 788889999999999775544455666 5899999999999999999999999999999999985
No 5
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.46 E-value=4.3e-14 Score=116.27 Aligned_cols=74 Identities=39% Similarity=0.669 Sum_probs=62.6
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCcccccc
Q 011555 72 SSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDF 148 (483)
Q Consensus 72 ~s~~ied~~d~~E~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRk~~~~d~i~~d~ 148 (483)
+++...++ ++.|+++|.+||++|...+. +..+|| .+||||||||+||+++|.+||.++++||+++++++|+++|
T Consensus 19 ~~g~~g~L-t~~q~~~L~elr~~l~~~~~-~~~~DD-~~llRfLrAr~fd~~~a~~ml~~~l~wR~~~~~d~i~~~f 92 (93)
T d1auaa1 19 LPGTPGNL-DSAQEKALAELRKLLEDAGF-IERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDF 92 (93)
T ss_dssp CTTSTTTC-CTTHHHHHHHHHHHHHHTTC-CSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHC
T ss_pred CCCCCCcC-CHHHHHHHHHHHHHHHHCCC-CCCCCH-HHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCcchhhhhc
Confidence 44555554 67788999999999998764 556677 5899999999999999999999999999999999987654
No 6
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.27 E-value=1.8e-12 Score=99.74 Aligned_cols=55 Identities=33% Similarity=0.523 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhC--CCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC
Q 011555 86 QAVDAFRQSLIMD--ELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGV 141 (483)
Q Consensus 86 ~aL~efRe~L~~~--~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~l~WRk~~~~ 141 (483)
++|++||++|.++ +++|...||. +|||||||++||+++|.+||.+|++||+.++.
T Consensus 2 ~aL~elR~~l~~~~~p~lp~~~dD~-~LlrFLRarkf~~~ka~~~l~~y~~~R~~~pe 58 (66)
T d1r5la1 2 PGLAALRRRAREAGVPLAPLPLTDS-FLLRFLRARDFDLDLAWRLLKNYYKWRAECPE 58 (66)
T ss_dssp TTHHHHHHHHHHHTCCCSSSCCCHH-HHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHcCCCcCCCCCCHH-HHHHHHHHccCCHHHHHHHHHHHHHHHHHCHH
Confidence 5799999999776 6888888885 89999999999999999999999999999863
No 7
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=65.75 E-value=6.6 Score=26.09 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 011555 82 VEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (483)
Q Consensus 82 ~~E~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~ 130 (483)
+++.+.|.+|.+.-. -+ ......||.+++||++.|+..+-
T Consensus 3 ~~~~~lI~qF~~iTg--------~~-~~~A~~~Le~~~w~Le~Ai~~yf 42 (46)
T d1v92a_ 3 EERQDALREFVAVTG--------AE-EDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp THHHHHHHHHHHHTC--------CC-HHHHHHHHHHTTSCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHC--------cC-HHHHHHHHHHcCCcHHHHHHHHH
Confidence 456789999997642 12 24678999999999999998764
No 8
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.81 E-value=20 Score=23.09 Aligned_cols=26 Identities=23% Similarity=0.093 Sum_probs=22.1
Q ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011555 106 DDYHMMLRFLKARKFDIDKAKHMWAE 131 (483)
Q Consensus 106 dD~~~LLRFLrArkfDvekA~k~l~~ 131 (483)
.|.+.-++-|.+.+.||++|++.|.+
T Consensus 15 ~d~~~Ni~AL~~t~Gdv~~Aie~Ll~ 40 (41)
T d2daha1 15 LNREANLQALIATGGDVDAAVEKLRQ 40 (41)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34467899999999999999999864
No 9
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=50.75 E-value=27 Score=23.47 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011555 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (483)
Q Consensus 85 ~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (483)
...|++|++.= ..|.+.-++-|.+.+.||+.|++.|..
T Consensus 9 ~~QL~qL~~MG---------F~d~~~Ni~AL~~t~GdV~~Aie~Ll~ 46 (50)
T d2dnaa1 9 SKEMECLQAMG---------FVNYNANLQALIATDGDTNAAIYKLKS 46 (50)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 35666666543 344467899999999999999999865
No 10
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.22 E-value=8.3 Score=27.11 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011555 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (483)
Q Consensus 86 ~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (483)
+.++.|++.. | ..|. ..+-.-|++++++++.|+..|..
T Consensus 11 e~i~~LkeMF------P-~~D~-~vI~~VL~a~~G~vd~aid~LL~ 48 (59)
T d1wgla_ 11 EDLKAIQDMF------P-NMDQ-EVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHC------S-SSCH-HHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHC------C-CCCH-HHHHHHHHHcCCCHHHHHHHHHh
Confidence 4577777665 3 3455 58999999999999999998864
No 11
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=44.82 E-value=18 Score=23.78 Aligned_cols=25 Identities=12% Similarity=0.017 Sum_probs=21.3
Q ss_pred CcHHHHHHHHHHcCCCHHHHHHHHH
Q 011555 106 DDYHMMLRFLKARKFDIDKAKHMWA 130 (483)
Q Consensus 106 dD~~~LLRFLrArkfDvekA~k~l~ 130 (483)
.|.+.-++-|.+.+.||+.|++.|-
T Consensus 18 ~d~~~Ni~AL~~t~GdV~~Aie~Ll 42 (44)
T d2bwba1 18 FDFDRNVAALRRSGGSVQGALDSLL 42 (44)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHh
Confidence 3446789999999999999999874
No 12
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=43.93 E-value=5.6 Score=27.54 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011555 82 VEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (483)
Q Consensus 82 ~~E~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~ 132 (483)
.+.+++++.|++.. | ..|. +.+---|+|++++++.|+..+-.+
T Consensus 10 ~e~~e~~~~Lk~MF------P-~~D~-~VI~~VL~a~~G~vd~aidaLL~M 52 (54)
T d1mn3a_ 10 NERKDTLNTLQNMF------P-DMDP-SLIEDVCIAKKSRIEPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHHHHHC------T-TSCH-HHHHHHHSCSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC------C-CCCH-HHHHHHHHHcCCCHHHHHHHHHhc
Confidence 45567888888765 3 2344 578889999999999999988654
No 13
>d1ufza_ a.5.9.1 (A:) HBS1-like protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.82 E-value=34 Score=25.35 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011555 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (483)
Q Consensus 85 ~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~ 131 (483)
...|+++|..+-. ...+ ..|..-....+||+++|+..+-+
T Consensus 35 ~SCldqmR~VvGD------svpe-~~lv~avlk~dydvekALd~vL~ 74 (83)
T d1ufza_ 35 YSCLDHMREVLGD------AVPD-DILTEAILKHKFDVQKALSVVLE 74 (83)
T ss_dssp HHHHHHHHHHTTT------TSCH-HHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc------cCCH-HHHHHHHHHccCCHHHHHHHHHh
Confidence 3578899988832 2344 46888888899999999988754
No 14
>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.12 E-value=93 Score=23.47 Aligned_cols=88 Identities=11% Similarity=0.044 Sum_probs=55.8
Q ss_pred CCCCCCcEEEEEcCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCeEEEEeCCCCCCCCCchhHHH
Q 011555 167 VDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARE 246 (483)
Q Consensus 167 ~Dk~GRPVli~rlg~~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~pa~s~~~~~~i~g~tiIiDl~G~sl~~~~~~~~~ 246 (483)
.|.+|+.+.-.+.+-.|+... +.+...+.+...++.++... .......+ ..+.+=+.|++. ..
T Consensus 20 ~d~~G~~l~~~~~g~~N~~~~----~~~~~~~~i~~~i~~~l~~~----~~~~~~~i--~~i~~GlAG~~~-------~~ 82 (117)
T d2ch5a2 20 VSEDGKILAEADGLSTNHWLI----GTDKCVERINEMVNRAKRKA----GVDPLVPL--RSLGLSLSGGDQ-------ED 82 (117)
T ss_dssp EETTSCEEEEEEECCCCHHHH----CHHHHHHHHHHHHHHHHHHH----TCCTTCCB--SEEEEEETTTTC-------HH
T ss_pred ECCCCCEEEEEEcCCCCcchh----hHHHHHHHHHHHHHHHHHHh----cCCCCccc--cEEEEEeeccCc-------ch
Confidence 588999888888888787542 66766666666666665431 10011112 234455666643 24
Q ss_pred HHHHHHHHhcccccccccEEEEEec
Q 011555 247 LILRLQKIDGDNYPETLHQMFIINA 271 (483)
Q Consensus 247 ~lk~ll~ilq~~YPErL~~i~IVNa 271 (483)
....+.+.+...||..-.+++|.|.
T Consensus 83 ~~~~l~~~l~~~~~~~~~~v~v~nD 107 (117)
T d2ch5a2 83 AGRILIEELRDRFPYLSESYLITTD 107 (117)
T ss_dssp HHHHHHHHHHHHCTTSBSCEEEEEH
T ss_pred hHHHHHHHHHHHCCCCCceEEEecc
Confidence 4455667777899988889999996
No 15
>d1vdla_ a.5.2.1 (A:) Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.83 E-value=40 Score=24.50 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 011555 84 ELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (483)
Q Consensus 84 E~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~ 130 (483)
+...|++||+.- -++|..+|..-|.|.+.|+..|+..|.
T Consensus 24 qQ~lLNQLrEIT--------GIqD~q~L~~ALkas~Gdl~~AV~~LT 62 (80)
T d1vdla_ 24 QQTFLNQLREIT--------GINDAQILQQALKDSNGNLELAVAFLT 62 (80)
T ss_dssp HHHHHHHHHHHS--------CCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHhcCCCHHHHHHHHh
Confidence 467888888875 256778999999999999999988775
No 16
>d2o6ka1 a.60.15.1 (A:4-73) Uncharacterized protein MW1311 {Staphylococcus aureus [TaxId: 1280]}
Probab=31.24 E-value=84 Score=22.37 Aligned_cols=51 Identities=14% Similarity=0.452 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHH
Q 011555 87 AVDAFRQSLIMDELLPERHDDYHMMLRFLKARK---FDIDKAKHMWAEMLQWRK 137 (483)
Q Consensus 87 aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArk---fDvekA~k~l~~~l~WRk 137 (483)
.+.+|-+.+..+...|..-+|++.|-+||.... ..+.---+.|..+++|-+
T Consensus 16 ~i~~lA~~a~~D~~FPK~s~d~~eiS~YLE~n~~~~~sm~~FD~aW~~Yle~~~ 69 (70)
T d2o6ka1 16 DKGRLAEEIFDDLAFPKHDDDFNILSDYIETHGDFTLPMSVFDDLYEEYTEWLK 69 (70)
T ss_dssp HHHHHHHHHHHCTTSCSSCCCHHHHHHHHHHHCCCSSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHcccccchHHHHHHHHHHHHHHhc
Confidence 466777788888889999999999999999876 346777788999999865
No 17
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.72 E-value=47 Score=23.17 Aligned_cols=37 Identities=22% Similarity=0.145 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 011555 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (483)
Q Consensus 85 ~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~ 130 (483)
...|++|++.= +.|.+.-++-|++.+.||+.|++.|.
T Consensus 23 ~~QL~qL~eMG---------F~d~~~Nl~AL~~t~Gdv~~Aie~Ll 59 (61)
T d1veja1 23 QQELEELKALG---------FANRDANLQALVATDGDIHAAIEMLL 59 (61)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 45666666553 33445679999999999999999874
No 18
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.30 E-value=87 Score=21.60 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011555 81 DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (483)
Q Consensus 81 d~~E~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~ 132 (483)
.+.++++|++|-+.= .+ .+...+=|+++++|++.|++.|..+
T Consensus 16 ~~~de~~v~~L~~MG---------F~-~~~a~~AL~~~~~n~e~A~~~Lls~ 57 (63)
T d1wgna_ 16 SPSERQCVETVVNMG---------YS-YECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp CHHHHHHHHHHHHHH---------CC-HHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHcC---------CC-HHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 455667787777664 22 2468899999999999999887653
No 19
>d1oaia_ a.5.2.3 (A:) FG-binding, C-terminal domain of TAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.97 E-value=1.1e+02 Score=20.87 Aligned_cols=44 Identities=11% Similarity=0.207 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011555 80 RDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (483)
Q Consensus 80 ~d~~E~~aL~efRe~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~l~~~ 132 (483)
+++++++.|.+|-+.-. .+- ++-.++|...+||.++|.+.+.+.
T Consensus 3 ls~~Qq~mv~~~s~~T~--------mn~-e~s~~cLe~~~Wd~~~A~~~F~~l 46 (59)
T d1oaia_ 3 LSPEQQEMLQAFSTQSG--------MNL-EWSQKCLQDNNWDYTRSAQAFTHL 46 (59)
T ss_dssp CCHHHHHHHHHHHHHHC--------CCH-HHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC--------CCH-HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 46777788888776652 222 578999999999999999988653
No 20
>d1n8fa_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Escherichia coli, phenylalanine-regulated isozyme [TaxId: 562]}
Probab=22.60 E-value=49 Score=30.85 Aligned_cols=89 Identities=16% Similarity=0.224 Sum_probs=49.3
Q ss_pred hcCcccccCCCCCCcEEEEEcCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCeEEEEeCCCCC-C
Q 011555 159 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVG-L 237 (483)
Q Consensus 159 ~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~pa~s~~~~~~i~g~tiIiDl~G~s-l 237 (483)
..||.+.|.|++|++.++...|+-|..-+++-.....|-...+......+.. ... .-.++|||+.-+ -
T Consensus 197 ~~~H~Fl~~~~~G~~aiv~T~GN~~~HiILRGG~~PNY~~~~V~~a~~~L~~----------~~l-~~~imVDcSHgNS~ 265 (343)
T d1n8fa_ 197 GAPHCFLSVTKWGHSAIVNTSGNGDCHIILRGGKEPNYSAKHVAEVKEGLNK----------AGL-PAQVMIDFSHANSS 265 (343)
T ss_dssp TSCCEEEEECTTSBEEEEEECCCSCEEEEECCSSSCCCSHHHHHHHHHHHHH----------TTC-CCCEEEECSGGGTT
T ss_pred cCCCeEEeeCCCCceEeeeccCCCceeEEEEcCCCCCCCHHHHHHHHHHHHH----------CCC-CHHHhhhccCCccc
Confidence 3577788999999999999888877654433111112222233333333321 112 234899999764 3
Q ss_pred CCCchhHHHHHHHHHHHhcccc
Q 011555 238 KNFSKNARELILRLQKIDGDNY 259 (483)
Q Consensus 238 ~~~~~~~~~~lk~ll~ilq~~Y 259 (483)
+++.+ -..+++.++.-+...-
T Consensus 266 Kd~~~-Q~~V~~~v~~qi~~g~ 286 (343)
T d1n8fa_ 266 KQFKK-QMDVCADVCQQIAGGE 286 (343)
T ss_dssp TCGGG-HHHHHHHHHHHHHTTC
T ss_pred ccHHH-HHHHHHHHHHHHHcCC
Confidence 44443 3456666665544443
Done!