BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011556
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 23/181 (12%)
Query: 317 IKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSA 376
I +TP+ + +Y ++I+ L +GG+ L + +++ AI+DSGT + RLP + A
Sbjct: 186 IWYTPIK----EEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDA 241
Query: 377 L------RSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVS 425
+ S +F + T L+ C+ S P IS + +R ++
Sbjct: 242 VVEAVARASLIPEFSDGFWTGSQLA----CWTNSETPWSYFPKISIYLRDENSSRSFRIT 297
Query: 426 IEGSAI---LIGSSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
I ++G+ C F G S ++ +IG + V++D AQ+RVGFA C
Sbjct: 298 ILPQLYIQPMMGAGLNYECYRF-GISPSTNALVIGATVMEGFYVIFDRAQKRVGFAASPC 356
Query: 483 S 483
+
Sbjct: 357 A 357
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 97/410 (23%), Positives = 156/410 (38%), Gaps = 74/410 (18%)
Query: 122 ATTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIY 181
A +P K + +T YV T+ TP +LV D G W C+
Sbjct: 8 ALVVPVKKDA--STLQYVTTINQRTPLVSENLVVDLGGRFLWVDCD-------------- 51
Query: 182 DPSASRTYANVSCSSAICD---SLESG---TGMTPQCAGSTC-VYGIEYGDNSFSAGFFA 234
S TY V C ++ C S+ G G P C +TC V+ N+ + G A
Sbjct: 52 QNYVSSTYRPVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVA 111
Query: 235 KETLTLTSSD--------VFPNFLFGCGQYN--RXXXXXXXXXXXXXXDSISLVSQ--TS 282
++ +++ S+D P F+F C + + I+L SQ ++
Sbjct: 112 EDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASA 171
Query: 283 RKYKKYFSYCLPXXXXXTGHLTFGKAAGNGP----------SKTIKFTPL---------- 322
+K+ F+ CL + F GN P KT+ +TPL
Sbjct: 172 FSFKRKFAMCLSGSTSSNSVIIF----GNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSAT 227
Query: 323 STATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPP------AAYSA 376
ST S Y + + + + K + + S+ S + A + GT I+ + P + Y A
Sbjct: 228 STQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGL-GGTKISTINPYTVLETSIYKA 286
Query: 377 LRSTFKKFMSKYPTAPALSI--LDTCYDFSNYTSI----SVPVISFFF-NRGVEVSIEGS 429
+ F K + S+ C+ N S SVP I + V +I GS
Sbjct: 287 VTEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGS 346
Query: 430 AILIGSSPKQICLAFA-GNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFA 478
++ + +CL G S+ +IG Q + V +D+A RVGF+
Sbjct: 347 NSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 97/410 (23%), Positives = 156/410 (38%), Gaps = 74/410 (18%)
Query: 122 ATTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIY 181
A +P K + +T YV T+ TP +LV D G W C+
Sbjct: 8 ALVVPVKKDA--STLQYVTTINQRTPLVSENLVVDLGGRFLWVDCD-------------- 51
Query: 182 DPSASRTYANVSCSSAICD---SLESG---TGMTPQCAGSTC-VYGIEYGDNSFSAGFFA 234
S TY V C ++ C S+ G G P C +TC V+ N+ + G A
Sbjct: 52 QNYVSSTYRPVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVA 111
Query: 235 KETLTLTSSD--------VFPNFLFGCGQYN--RXXXXXXXXXXXXXXDSISLVSQ--TS 282
++ +++ S+D P F+F C + + I+L SQ ++
Sbjct: 112 EDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASA 171
Query: 283 RKYKKYFSYCLPXXXXXTGHLTFGKAAGNGP----------SKTIKFTPL---------- 322
+K+ F+ CL + F GN P KT+ +TPL
Sbjct: 172 FSFKRKFAMCLSGSTSSNSVIIF----GNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSAT 227
Query: 323 STATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPP------AAYSA 376
ST S Y + + + + K + + S+ S + A + GT I+ + P + Y A
Sbjct: 228 STQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGL-GGTKISTINPYTVLETSIYKA 286
Query: 377 LRSTFKKFMSKYPTAPALSI--LDTCYDFSNYTSI----SVPVISFFF-NRGVEVSIEGS 429
+ F K + S+ C+ N S SVP I + V +I GS
Sbjct: 287 VTEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGS 346
Query: 430 AILIGSSPKQICLAFA-GNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFA 478
++ + +CL G S+ +IG Q + V +D+A RVGF+
Sbjct: 347 NSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 90/218 (41%), Gaps = 23/218 (10%)
Query: 281 TSRKYKKYFSYCLPXXXXXTGHLTFGKAAGNGP--SKTIKFTPLSTATADSSFYGLDIIG 338
+++K F CLP G FG P ++++ +TPL T + Y +
Sbjct: 156 SAQKVANRFLLCLPTGG--PGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHY-ISARS 212
Query: 339 LSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKY-----PTA-- 391
+ VG ++P+P ++ G ++ + L P Y L F K ++ P A
Sbjct: 213 IVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARA 272
Query: 392 -PALSILDTCYDF----SNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAF-- 444
A++ CYD +N +VP + + G + ++ G ++ C+AF
Sbjct: 273 VEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVE 332
Query: 445 ----AGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFA 478
A + I+G Q + + +D+ ++R+GF+
Sbjct: 333 MKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFS 370
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 84/401 (20%), Positives = 145/401 (36%), Gaps = 62/401 (15%)
Query: 118 KETDATTIPAK-DGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQ 176
K + +P + DGS TG + + TP + ++ D + W CE QQ
Sbjct: 5 KPINLVVLPVQNDGS---TGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCE-------QQ 54
Query: 177 KEPIYDPSASRTYANVSCSSAICDSLESGTGMT------PQCAGSTCVY----------G 220
+S+TY C S C + ++ P C +TC G
Sbjct: 55 Y-------SSKTYQAPFCHSTQCSRANTHQCLSCPAASRPGCHKNTCGLMSTNPITQQTG 107
Query: 221 I-EYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQ---YNRXXXXXXXXXXXXXXDSIS 276
+ E G++ + T L P FLF C + IS
Sbjct: 108 LGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPIS 167
Query: 277 LVSQTSRKY--KKYFSYCLPXXXXXTGHLTFGKAAGNGPS-------KTIKFTPLSTATA 327
L +Q + + ++ F+ CL G + FG A N + FTPL+
Sbjct: 168 LPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQ 227
Query: 328 DSSFYGLDIIGLSVGGKKLPIPISVFSS-------AGAIIDSGTVITRLPPAAYSALRST 380
Y + + + + + P++ SS G +I + T L + Y A
Sbjct: 228 GE--YNVRVNSIRINQHSV-FPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQV 284
Query: 381 FKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNR--GVEVSIEGSAILIGSSPK 438
F + + K +++ C++ SN + + P + ++ G I G +++ + P
Sbjct: 285 FAQQLPKQAQVKSVAPFGLCFN-SNKIN-AYPSVDLVMDKPNGPVWRISGEDLMVQAQPG 342
Query: 439 QICLAFAGNSDDSDVAI-IGNVQQKTLEVVYDVAQRRVGFA 478
CL I +G Q + VV+D+A+ RVGF+
Sbjct: 343 VTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGFS 383
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 141/375 (37%), Gaps = 45/375 (12%)
Query: 127 AKDGSVVATG-------DYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEP 179
A DGSV G +Y + V IGTP +D L+FDTGS TW + C +
Sbjct: 2 AADGSVDTPGYYDFDLEEYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSR 61
Query: 180 IYDPSASRTYANVSCSSAICDSLESGTGMTPQ---CAGSTCVYG--IEYGDNSFSAGFFA 234
+DPSAS T+ + + I G+ + G V + Y DN G A
Sbjct: 62 FFDPSASSTFKATNYNLNITYGTGGANGLYFEDSIAIGDITVTKQILAYVDN--VRGPTA 119
Query: 235 KETLTLTSSDVFPNFLFGCGQYNRXXXXXXXXXXXXXXDSISLVSQ---TSRKYKKYFSY 291
+++ ++D+F + LFG Y ++L Q +S + Y +
Sbjct: 120 EQS---PNADIFLDGLFGAA-YPDNTAMEAEYGSTYNTVHVNLYKQGLISSPLFSVYMN- 174
Query: 292 CLPXXXXXTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPIS 351
TG + FG I +T + + F+ + G++V G
Sbjct: 175 ----TNSGTGEVVFGGVNNTLLGGDIAYTDVMSRYGGYYFWDAPVTGITVDGSAA----V 226
Query: 352 VFSSAGAI-IDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSIS 410
FS A ID+GT +P +A S + K T + C + N S
Sbjct: 227 RFSRPQAFTIDTGTNFFIMPSSAASKI----VKAALPDATETQQGWVVPCASYQN----S 278
Query: 411 VPVISFFFNRG------VEVSIEGSAILIGSSPKQICLAFAGNSDDSDVAIIGNVQQKTL 464
IS + +E+S+ S +L+ F D + I+GN+ +
Sbjct: 279 KSTISIVMQKSGSSSDTIEISVPVSKMLLPVDQSNETCMFIILPDGGNQYIVGNLFLRFF 338
Query: 465 EVVYDVAQRRVGFAP 479
VYD R+GFAP
Sbjct: 339 VNVYDFGNNRIGFAP 353
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 138/363 (38%), Gaps = 72/363 (19%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL-RFCYQQKEPIYDPSASRTYANVSCSS 196
Y + IGTP ++ ++FDTGS W C + C ++PS S TY
Sbjct: 14 YFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSR--FNPSESSTY------- 64
Query: 197 AICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQ- 255
S G T + ++YG S + GFF +TLT+ S V PN FG +
Sbjct: 65 -------STNGQT---------FSLQYGSGSLT-GFFGYDTLTVQSIQV-PNQEFGLSEN 106
Query: 256 -------YNRXXXXXXXXXXXXXXDSISLVSQ--------TSRKYKKYFSYCLPXXXXXT 300
Y + D + Q TS + Y S
Sbjct: 107 EPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLS---NQQGSSG 163
Query: 301 GHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAG--A 358
G + FG + + I + P++ ++ + I +GG+ S + S G A
Sbjct: 164 GAVVFGGVDSSLYTGQIYWAPVT----QELYWQIGIEEFLIGGQA-----SGWCSEGCQA 214
Query: 359 IIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFF 418
I+D+GT + +P SAL +Y L C N +P ++F
Sbjct: 215 IVDTGTSLLTVPQQYMSALLQATGAQEDEYG-----QFLVNCNSIQN-----LPSLTFII 264
Query: 419 NRGVEVSIEGSAILI---GSSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRV 475
N GVE + S+ ++ G + + + + + I+G+V ++ VYD+ RV
Sbjct: 265 N-GVEFPLPPSSYILSNNGYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRV 323
Query: 476 GFA 478
GFA
Sbjct: 324 GFA 326
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 203 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 258
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A ++ K S K+P L C+ PVIS + N+ ++I
Sbjct: 259 AAVASIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 318
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 319 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 179 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 234
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 235 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 294
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 295 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 351
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 88/218 (40%), Gaps = 23/218 (10%)
Query: 281 TSRKYKKYFSYCLPXXXXXTGHLTFGKAAGNGP--SKTIKFTPLSTATADSSFYGLDIIG 338
+++K F CLP G FG P ++++ +TPL T + Y +
Sbjct: 156 SAQKVANRFLLCLPTGG--PGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHY-ISARS 212
Query: 339 LSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSK--------YPT 390
+ VG ++P+P ++ G ++ + L P Y L F K ++
Sbjct: 213 IVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARA 272
Query: 391 APALSILDTCYDF----SNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAF-- 444
A++ CYD +N +VP + + G + ++ G ++ C+AF
Sbjct: 273 VVAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVE 332
Query: 445 ----AGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFA 478
A + I+G Q + + +D+ ++R+GF+
Sbjct: 333 MKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFS 370
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 204 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 259
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 260 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 319
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 320 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 376
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 207 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 262
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 203 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 258
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 259 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 318
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 319 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 210 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 265
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 266 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 325
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 326 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 382
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 205 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 260
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 261 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 320
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 321 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 377
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 206 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 261
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 262 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 321
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 322 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 203 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 258
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 259 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 318
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 319 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 207 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 262
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 208 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 263
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 264 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 323
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 324 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 380
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 227 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 282
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 283 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 342
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 343 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 399
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 206 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 261
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 262 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 321
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 322 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 207 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 262
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 191 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 246
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 247 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 306
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 307 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 213 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 268
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 269 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 328
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 329 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 385
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 206 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 261
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 262 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 321
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 322 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 378
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 208 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 263
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 264 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 323
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 324 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 380
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 193 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 248
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 249 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 308
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 309 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 365
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 188 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 243
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 244 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 303
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 304 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 360
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 227 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 282
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 283 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 342
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 343 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 399
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 203 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 258
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 259 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 318
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 319 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 207 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 262
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 192 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 247
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 248 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 307
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 308 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 364
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 190 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 245
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 246 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 305
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 306 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 362
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 193 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 248
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 249 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 308
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 309 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 365
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 194 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 249
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 250 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 309
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 310 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 366
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 193 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 248
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 249 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 308
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 309 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 365
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 191 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 246
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 247 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 306
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 307 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 207 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 262
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 203 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 258
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 259 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 318
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 319 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 375
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 191 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 246
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 247 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 306
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 307 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 196 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 251
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 252 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 311
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 312 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 368
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 196 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 251
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 252 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 311
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 312 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 368
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 191 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 246
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 247 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 306
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 307 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 191 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 246
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 247 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 306
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 307 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 363
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 250 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 305
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 306 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 365
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 366 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 422
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 249 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 304
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 305 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 364
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 365 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 421
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 250 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 305
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 306 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 365
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 366 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 422
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 207 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 262
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFA-ISQSSCGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 24/182 (13%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 187 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 242
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILI 433
A + K S K+P L C+ PVIS + EV+ + I I
Sbjct: 243 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMG--EVTQQSFRITI 300
Query: 434 GSSPKQI-------------CLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPK 480
P+Q C FA S S ++G V + VV+D A++R+GFA
Sbjct: 301 --LPQQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVS 357
Query: 481 GC 482
C
Sbjct: 358 AC 359
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 24/182 (13%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 190 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 245
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILI 433
A + K S K+P L C+ PVIS + EV+ + I I
Sbjct: 246 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMG--EVTQQSFRITI 303
Query: 434 GSSPKQI-------------CLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPK 480
P+Q C FA S S ++G V + VV+D A++R+GFA
Sbjct: 304 --LPQQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVS 360
Query: 481 GC 482
C
Sbjct: 361 AC 362
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 24/182 (13%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 188 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 243
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILI 433
A + K S K+P L C+ PVIS + EV+ + I I
Sbjct: 244 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMG--EVTQQSFRITI 301
Query: 434 GSSPKQI-------------CLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPK 480
P+Q C FA S S ++G V + VV+D A++R+GFA
Sbjct: 302 --LPQQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVS 358
Query: 481 GC 482
C
Sbjct: 359 AC 360
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSGT RLP +
Sbjct: 207 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE 262
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S +G V + VV+D A++R+GFA C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTCMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 16/178 (8%)
Query: 316 TIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375
++ +TP+ +Y + I+ + + G+ L + ++ +I+DSG RLP +
Sbjct: 207 SLWYTPIRR----EWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGCTNLRLPKKVFE 262
Query: 376 ALRSTFKKFMS--KYPTAPALSILDTCYDFSNYTSISVPVISFFF-----NRGVEVSIEG 428
A + K S K+P L C+ PVIS + N+ ++I
Sbjct: 263 AAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILP 322
Query: 429 SAILIG----SSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482
L ++ + C FA S S ++G V + VV+D A++R+GFA C
Sbjct: 323 QQYLRPVEDVATSQDDCYKFA-ISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 379
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 44/104 (42%), Gaps = 25/104 (24%)
Query: 137 DYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSS 196
+Y V IGTP K +L FDTGS W C +Q + YDP+ S TY
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSRQTK--YDPNQSSTY------- 66
Query: 197 AICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTL 240
Q G T + I YGD S ++G AK+ + L
Sbjct: 67 --------------QADGRT--WSISYGDGSSASGILAKDNVNL 94
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 93/226 (41%), Gaps = 27/226 (11%)
Query: 275 ISLVSQ--TSRKYKKYFSYCLPXXXXXTGHLTFGKAAGNGP--SKTIKFTPLSTATADSS 330
++L SQ +++K F CLP G FG P ++++ +TPL +
Sbjct: 150 LALPSQVASAQKVPNKFLLCLPTGG--PGVAIFGGGPLPWPQFTQSMDYTPLVAKGGSPA 207
Query: 331 FYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPT 390
Y + + V ++PI ++ G ++ + L Y L F K ++ P
Sbjct: 208 HY-ISARSIKVENTRVPISERALATGGVMLSTRLPYVLLRRDVYRPLVDAFTKALAAQPA 266
Query: 391 --APA------LSILDTCYDF----SNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPK 438
AP ++ + CYD +N VP + + G + ++ G ++ P
Sbjct: 267 NGAPVARAVKPVAPFELCYDTKTLGNNPGGYWVPNVLLELDGGSDWAMTGKNSMVDVKPG 326
Query: 439 QICLAF-------AGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGF 477
C+AF AG+ V I+G Q + + +D+ ++R+GF
Sbjct: 327 TACVAFVEMKGVDAGDGSAPAV-ILGGAQMEDFVLDFDMEKKRLGF 371
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 43/104 (41%), Gaps = 25/104 (24%)
Query: 137 DYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSS 196
+Y V IGTP K +L FDTGS W C Q + YDP+ S TY
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTK--YDPNQSSTY------- 66
Query: 197 AICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTL 240
Q G T + I YGD S ++G AK+ + L
Sbjct: 67 --------------QADGRT--WSISYGDGSSASGILAKDNVNL 94
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSA 197
Y +GIGTP + +++FDTGS + W C+ + +Y+ S S TY A
Sbjct: 15 YFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTYKENGTFGA 74
Query: 198 ICDSLESGTGMTPQ 211
I S TG Q
Sbjct: 75 IIYGTGSITGFFSQ 88
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 129 DGSVVATG-------DYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIY 181
DGSV G +Y + V IGTP +D L+FDTGS TW + C + +
Sbjct: 4 DGSVDTPGLYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFF 63
Query: 182 DPSASRTY 189
DPS+S T+
Sbjct: 64 DPSSSSTF 71
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 422 VEVSIEGSAILIGSSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAP 479
++VS+ S +L+ F D + I+GN+ + VYD + R+GFAP
Sbjct: 296 IDVSVPISKMLLPVDKSGETCMFIVLPDGGNQFIVGNLFLRFFVNVYDFGKNRIGFAP 353
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 137 DYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRF-CYQQKEPIYDPSASRTYANVSCS 195
+Y T+GIGTP +D ++VFDTGS W C C ++P S TY + S +
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNR--FNPEDSSTYQSTSET 70
Query: 196 SAICDSLESGTGM 208
+I S TG+
Sbjct: 71 VSITYGTGSMTGI 83
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 137 DYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRF-CYQQKEPIYDPSASRTYANVSCS 195
+Y T+GIGTP +D ++VFDTGS W C C ++P S TY + S +
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNR--FNPEDSSTYQSTSET 70
Query: 196 SAICDSLESGTGM 208
+I S TG+
Sbjct: 71 VSITYGTGSMTGI 83
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/350 (22%), Positives = 132/350 (37%), Gaps = 47/350 (13%)
Query: 137 DYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPC-LRFCYQQKEPIYDPSASRTYANVSCS 195
+Y + IGTP + ++FDTGS W C + C + + P S TY +
Sbjct: 13 EYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNK--FKPRQSSTYVETGKT 70
Query: 196 SAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQ 255
L GTG + GI G ++ S G + L S P
Sbjct: 71 V----DLTYGTG---------GMRGI-LGQDTVSVGGGSDPNQELGESQTEPGPFQAAAP 116
Query: 256 YNRXXXXXXXXXXXXXXDSI--SLVSQTSRKYKKYFSYCLPXXXXXTGHLTFGKAAGNGP 313
++ + ++ SQ S K FS+ L + G +
Sbjct: 117 FDGILGLAYPSIAAAGAVPVFDNMGSQ-SLVEKDLFSFYLSGGGANGSEVMLGGVDNSHY 175
Query: 314 SKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAA 373
+ +I + P++ ++ + + G++V G+ + AI+D+GT P
Sbjct: 176 TGSIHWIPVTA----EKYWQVALDGITVNGQT-----AACEGCQAIVDTGTSKIVAP--- 223
Query: 374 YSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILI 433
SAL + K + ++ C S+P I+F N GV+ + SA +
Sbjct: 224 VSALANIMKDIGASENQG---EMMGNCASVQ-----SLPDITFTIN-GVKQPLPPSAYIE 274
Query: 434 GSSPKQICLAFAGN----SDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAP 479
G + C + G+ S+ S++ I G+V + +YD +VGFAP
Sbjct: 275 GD--QAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAP 322
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 137 DYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRF-CYQQKEPIYDPSASRTYANVSCS 195
+Y T+GIGTP +D +++FDTGS W C C + ++P S T+ S
Sbjct: 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTFEATSQE 114
Query: 196 SAICDSLESGTGM 208
+I S TG+
Sbjct: 115 LSITYGTGSMTGI 127
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 40/99 (40%), Gaps = 29/99 (29%)
Query: 130 GSVVATG---DYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSAS 186
GSV AT DYVV VG+G+P SL+ DTGS TW A
Sbjct: 3 GSVPATNQLVDYVVNVGVGSPATTYSLLVDTGSSNTWL-------------------GAD 43
Query: 187 RTYANVSCSSAICDSLESGTGMTPQCAGSTCVYGIEYGD 225
++Y S SSA D + GS G EY D
Sbjct: 44 KSYVKTSTSSATSDKVS-------VTYGSGSFSGTEYTD 75
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 301 GHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAII 360
G LTFG + + +I +TP+++ + S+++G I S+ + S+ SS I+
Sbjct: 158 GELTFGATDSSKYTGSITYTPITSTSPASAYWG---INQSI---RYGSSTSILSSTAGIV 211
Query: 361 DSGTVITRLPPAAYSALR 378
D+GT +T + A++ +
Sbjct: 212 DTGTTLTLIASDAFAKYK 229
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 137 DYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRF-CYQQKEPIYDPSASRTYANVSCS 195
+Y T+GIGTP +D +++FDTGS W C C + ++P S T+ S
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTFEATSQE 70
Query: 196 SAICDSLESGTGM 208
+I S TG+
Sbjct: 71 LSITYGTGSMTGI 83
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 137 DYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRF-CYQQKEPIYDPSASRTYANVSCS 195
+Y T+GIGTP +D +++FDTGS W C C + ++P S T+ S
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTFEATSQE 70
Query: 196 SAICDSLESGTGM 208
+I S TG+
Sbjct: 71 LSITYGTGSMTGI 83
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 137 DYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRF-CYQQKEPIYDPSASRTYANVSCS 195
+Y T+GIGTP +D +++FDTGS W C C + ++P S T+ S
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTFEATSQE 70
Query: 196 SAICDSLESGTGM 208
+I S TG+
Sbjct: 71 LSITYGTGSMTGI 83
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRF---CYQQKEPIYDPSASRTYAN 191
Y +GIGTP + +VFDTGS W C R C K ++D S S +Y +
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK--LFDASDSSSYKH 74
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRF---CYQQKEPIYDPSASRTYAN 191
Y +GIGTP + +VFDTGS W C R C K ++D S S +Y +
Sbjct: 17 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK--LFDASDSSSYKH 71
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRF---CYQQKEPIYDPSASRTYAN 191
Y +GIGTP + +VFDTGS W C R C K ++D S S +Y +
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK--LFDASDSSSYKH 74
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRF---CYQQKEPIYDPSASRTYAN 191
Y +GIGTP + +VFDTGS W C R C K ++D S S +Y +
Sbjct: 16 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK--LFDASDSSSYKH 70
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRF---CYQQKEPIYDPSASRTYAN 191
Y +GIGTP + +VFDTGS W C R C K ++D S S +Y +
Sbjct: 13 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK--LFDASDSSSYKH 67
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRF---CYQQKEPIYDPSASRTYAN 191
Y +GIGTP + +VFDTGS W C R C K ++D S S +Y +
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK--LFDASDSSSYKH 74
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRF---CYQQKEPIYDPSASRTYAN 191
Y +GIGTP + +VFDTGS W C R C K ++D S S +Y +
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK--LFDASDSSSYKH 74
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRF---CYQQKEPIYDPSASRTYAN 191
Y +GIGTP + +VFDTGS W C R C K ++D S S +Y +
Sbjct: 63 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK--LFDASDSSSYKH 117
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 137 DYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRF-CYQQKEPIYDPSASRTY 189
+Y T+GIGTP +D +++FDTGS W C C + ++P S T+
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 64
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 137 DYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRF-CYQQKEPIYDPSASRTY 189
+Y T+GIGTP +D +++FDTGS W C C + ++P S T+
Sbjct: 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 108
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 137 DYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRF-CYQQKEPIYDPSASRTY 189
+Y T+GIGTP +D +++FDTGS W C C + ++P S T+
Sbjct: 13 EYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQ--FNPDDSSTF 64
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 33/120 (27%)
Query: 128 KDGSVVATGDYVVT-----VGIGTPKKDLSLVFDTGSDLTWTQCEPCL--RFCYQQKEPI 180
++G +VA +Y+ +G+GTP + +++FDTGS W C CY
Sbjct: 39 EEGDIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSR-- 96
Query: 181 YDPSASRTYANVSCSSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTL 240
Y AS TY +A I+YG S AG+F+++++T+
Sbjct: 97 YKAGASSTYKKNGKPAA-----------------------IQYGTGSI-AGYFSEDSVTV 132
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 78/371 (21%), Positives = 143/371 (38%), Gaps = 93/371 (25%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWT-----QCEPCL-----RFCYQQKEPIYDPSASR 187
Y + +G+ ++ ++V DTGS W +C+ FC Q E +DPS+S
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQ--EGTFDPSSSS 71
Query: 188 TYANVSCSSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKET---------- 237
+ N++ + IEYGD + S G F K+T
Sbjct: 72 SAQNLNQD-----------------------FSIEYGDLTSSQGSFYKDTVGFGGISIKN 108
Query: 238 -----LTLTSSDVFPNFLFGCGQYNRXXXXXXXXXXXXXXDSISL-VSQTSRKYKKYFSY 291
+T TS D + G G D++ + + + K +S
Sbjct: 109 QQFADVTTTSVD---QGIMGIG-------FTADEAGYNLYDNVPVTLKKQGIINKNAYSL 158
Query: 292 CLPXXXXXTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPIS 351
L TG + FG + T+ P++++ + + +G S
Sbjct: 159 YLNSEDASTGKIIFGGVDNAKYTGTLTALPVTSSVE---------LRVHLGSINFD-GTS 208
Query: 352 VFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFM----SKYPTAPALSILDTCYDFSNYT 407
V ++A ++DSGT IT +ST KF + + + + L +C
Sbjct: 209 VSTNADVVLDSGTTITYFS-------QSTADKFARIVGATWDSRNEIYRLPSC------- 254
Query: 408 SISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVV 467
+S + F F++GV++++ S +++ S IC + G S + D I+G+ + +V
Sbjct: 255 DLSGDAV-FNFDQGVKITVPLSELILKDSDSSIC--YFGISRN-DANILGDNFLRRAYIV 310
Query: 468 YDVAQRRVGFA 478
YD+ + + A
Sbjct: 311 YDLDDKTISLA 321
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 122/340 (35%), Gaps = 43/340 (12%)
Query: 144 IGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLE 203
IGT K+ +FDTGS W C K +YD SAS++Y I S
Sbjct: 22 IGTNKQPFMFIFDTGSANLWVPSVNCDSIGCSTKH-LYDASASKSYEKDGTKVEI--SYG 78
Query: 204 SGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRXXXXX 263
SGT G I GD S F + D+ P ++ +++
Sbjct: 79 SGT-----VRGYFSKDVISLGDLSLPYKFIE----VTDADDLEP--IYSGSEFDGILGLG 127
Query: 264 XXXXXXXXXDSISLVSQTSRKYKK-YFSYCLPXXXXXTGHLTFGKAAGNGPSKTIKFTPL 322
D + + + K F++ LP G+LT G G PL
Sbjct: 128 WKDLSIGSIDPVVVELKKQNKIDNALFTFYLPVHDKHVGYLTIG-----GIESDFYEGPL 182
Query: 323 STATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFK 382
+ + Y I L + K V A A++DSGT P S L F+
Sbjct: 183 TYEKLNHDLYWQ--IDLDIHFGKY-----VMQKANAVVDSGTSTITAPT---SFLNKFFR 232
Query: 383 KF-MSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAIL--IGSSPKQ 439
+ K P P + TC + +P + F +R + ++E + +
Sbjct: 233 DMNVIKVPFLPLY--VTTC------DNDDLPTLE-FHSRNNKYTLEPEFYMDPLSDIDPA 283
Query: 440 ICLAFAGNSD-DSDVAIIGNVQQKTLEVVYDVAQRRVGFA 478
+C+ + D D + I+G+ + V+D + VGFA
Sbjct: 284 LCMLYILPVDIDDNTFILGDPFMRKYFTVFDYEKESVGFA 323
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 62/309 (20%), Positives = 110/309 (35%), Gaps = 59/309 (19%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWT--QCEPCLRFCYQQKEPIYDPSASRTYANVSCS 195
Y V +G+ K+ +++ DTGS W C + + + PS+S +Y N+ +
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAA 73
Query: 196 SAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTS--------SDV-- 245
+ I YGD S S G + K+T+T+ +DV
Sbjct: 74 -----------------------FTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQ 110
Query: 246 --FPNFLFGCG-QYNRXXXXXXXXXXXXXXDSISLVSQTSRKYK-KYFSYCLPXXXXXTG 301
+ G G N D++ + + K + +S L TG
Sbjct: 111 TSVDQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAETG 170
Query: 302 HLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFS-SAGAII 360
+ FG S + ++++ A L++ + + S FS GA++
Sbjct: 171 TIIFGGVDNAKYSGKLVAEQVTSSQA-----------LTISLASVNLKGSSFSFGDGALL 219
Query: 361 DSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILD--------TCYDFSNYTSISVP 412
DSGT +T P + L + + L +D T ++F N I+VP
Sbjct: 220 DSGTTLTYFPSDFAAQLADKAGARLVQVARDQYLYFIDCNTDTSGTTVFNFGNGAKITVP 279
Query: 413 VISFFFNRG 421
+ + G
Sbjct: 280 NTEYVYQNG 288
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 72/372 (19%), Positives = 133/372 (35%), Gaps = 86/372 (23%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQ-----CEPCLR-----FCYQQKEPIYDPSASR 187
Y + +G+ + L+++ DTGS W C P R FC + Y P++SR
Sbjct: 14 YTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFC--KSAGSYSPASSR 71
Query: 188 TYANVSCSSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTL----TSS 243
T N++ + I+YGD S++ G K+T+ +
Sbjct: 72 TSQNLNTR-----------------------FDIKYGDGSYAKGKLYKDTVGIGGVSVRD 108
Query: 244 DVFPNF--------LFGCGQYNRXXXXXXXXXXXXXXDSISLVSQTSRKYKKYFSYCLPX 295
+F N + G G + + ++ + + +S L
Sbjct: 109 QLFANVWSTSARKGILGIGFQSGEATEFDYDNLPISLRNQGIIGKAA------YSLYLNS 162
Query: 296 XXXXTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIP-ISVFS 354
TG + FG S ++ P+++ L+VG + + + +V +
Sbjct: 163 AEASTGQIIFGGIDKAKYSGSLVDLPITSEKK-----------LTVGLRSVNVRGRNVDA 211
Query: 355 SAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTC-------YDFSNYT 407
+ ++DSGT I+ + + M K+ +A + C + F N
Sbjct: 212 NTNVLLDSGTTISYFTRSIVRNILYAIGAQM-KFDSAGNKVYVADCKTSGTIDFQFGNNL 270
Query: 408 SISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVV 467
ISVPV F F P C S+D+ I+G+ ++ VV
Sbjct: 271 KISVPVSEFLF----------QTYYTSGKPFPKCEVRIRESEDN---ILGDNFLRSAYVV 317
Query: 468 YDVAQRRVGFAP 479
Y++ +++ AP
Sbjct: 318 YNLDDKKISMAP 329
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 137 DYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLR-FCYQQKEPIYDPSASRTYANVSCS 195
+Y T+ IG+P ++ +++FDTGS W C C + PS S TY+ S
Sbjct: 24 EYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSR--FQPSQSSTYSQPGQS 81
Query: 196 SAICDSLESGTG 207
S++ GTG
Sbjct: 82 F----SIQYGTG 89
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL-RFCYQQKEPIYDPSASRTYANV 192
Y + IGTP ++ ++VFDTGS W C C +DP S T+ N+
Sbjct: 13 YFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHR--FDPRKSSTFRNL 66
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRF 172
Y +GIGTP + ++FDTGS W C R
Sbjct: 17 YYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRL 51
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRT 188
Y+ V IGTP + L+L FDTGS W + + IY PS S T
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETT--ASEVXQTIYTPSKSTT 65
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRT 188
Y+ V IGTP + L+L FDTGS W + + IY PS S T
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETT--ASEVXQTIYTPSKSTT 65
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 77/363 (21%), Positives = 126/363 (34%), Gaps = 70/363 (19%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTW----------TQCEPCLRFCYQQKEPIYDPSASR 187
Y + +G+ + L+++ DTGS W T + FC Q+ YDPS S
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKG--TYDPSGSS 71
Query: 188 TYANVSCSSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFP 247
+++ TP + I YGD S S G K+T+ +
Sbjct: 72 ASQDLN---------------TP--------FKIGYGDGSSSQGTLYKDTVGFGGVSIKN 108
Query: 248 NFLFGCGQYN-RXXXXXXXXXXXXXXDSISLVSQTSRKY----KKYFSYCLPXXXXXTGH 302
L + S V T +K K +S L TG
Sbjct: 109 QVLADVDSTSIDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQ 168
Query: 303 LTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDS 362
+ FG S ++ P+ T+D + + + V GK + + ++DS
Sbjct: 169 IIFGGVDNAKYSGSLIALPV---TSDRELR-ISLGSVEVSGKTINT-----DNVDVLLDS 219
Query: 363 GTVITRLPPAAYSALRSTFKKFMSKYPTAPALSIL------DTCYDFSNYTSISVPVISF 416
GT IT L + F +++ + + D ++FS ISVP F
Sbjct: 220 GTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYEVDCNLSGDVVFNFSKNAKISVPASEF 279
Query: 417 FFNRGVEVSIEGSAILIGSSPKQIC-LAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRV 475
S++G P C L F D +D I+G+ ++ +VYD+ +
Sbjct: 280 ------AASLQGD----DGQPYDKCQLLF----DVNDANILGDNFLRSAYIVYDLDDNEI 325
Query: 476 GFA 478
A
Sbjct: 326 SLA 328
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRT 188
Y+ V IGTP + L+L FDTGS W + IY PS S T
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTA-SEVDGQTIYTPSKSTT 66
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRT 188
Y+ V IGTP + L+L FDTGS W + IY PS S T
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTA-SEVDGQTIYTPSKSTT 66
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRF-CYQQKEPIYDPSASRTYANVSCSS 196
Y + +GTP ++ ++ DTGS W C C+ + YD AS +Y
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSYKANGTEF 72
Query: 197 AICDSLESGTG 207
AI + GTG
Sbjct: 73 AI----QYGTG 79
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRF-CYQQKEPIYDPSASRTYANVSCSS 196
Y + +GTP ++ ++ DTGS W C C+ + YD AS +Y
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSYKANGTEF 72
Query: 197 AICDSLESGTG 207
AI + GTG
Sbjct: 73 AI----QYGTG 79
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRF-CYQQKEPIYDPSASRTYANVSCSS 196
Y + +GTP ++ ++ DTGS W C C+ + YD AS +Y
Sbjct: 15 YYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSYKANGTEF 72
Query: 197 AICDSLESGTG 207
AI + GTG
Sbjct: 73 AI----QYGTG 79
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 134 ATGDYVVTVGIGTPKKDLSLVFDTGSDLTW 163
A +Y+ +V IGTP + L L FDTGS W
Sbjct: 13 ADSEYITSVSIGTPAQVLPLDFDTGSSDLW 42
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 27/169 (15%)
Query: 317 IKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSA 376
+ +TP+ + F+ G SVGG KL +S I D+GT + L A
Sbjct: 183 VAYTPVDNSQG---FWEFTASGYSVGGGKLNR-----NSIDGIADTGTTLLLLDDNVVDA 234
Query: 377 LRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVE-VSIEGSAILIGS 435
+ + ++Y + D D SF F G ++I G L+
Sbjct: 235 YYANVQS--AQYDNQQEGVVFDCDEDLP----------SFSFGVGSSTITIPGD--LLNL 280
Query: 436 SPKQ----ICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPK 480
+P + C +S + I G+V K VV+D+ R+G+A K
Sbjct: 281 TPLEEGSSTCFGGLQSSSGIGINIFGDVALKAALVVFDLGNERLGWAQK 329
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 29/106 (27%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWT---QCEPCLRFCYQQKEPIYDPSASRTYANVSC 194
Y +GIGTP + ++VFDTGS W C+ C+ + Y+ S TY
Sbjct: 15 YYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHK--YNSDKSSTY----- 67
Query: 195 SSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTL 240
+++GT + I YG S S G+ +++T+++
Sbjct: 68 -------VKNGTS-----------FDIHYGSGSLS-GYLSQDTVSV 94
>pdb|4EBG|A Chain A, Crystal Structure Of A Hypothetical Protein (Sav0303) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.35 A
Resolution
pdb|4EBG|B Chain B, Crystal Structure Of A Hypothetical Protein (Sav0303) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.35 A
Resolution
Length = 101
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 94 QDQSRVNSIHSKSRLSKNSVGADVKETDATTIPAKDGSVVATG 136
++Q++ N I SK +N++ D+K+ D+ T KDG V+ G
Sbjct: 11 KEQNQXNKIASKV---QNTIKTDIKQEDSNTHVYKDGKVIVIG 50
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 35/111 (31%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTW----------TQCEPCLRFCYQQKEPIYDPSASR 187
Y + +G+ + L+++ DTGS W T + FC Q+ YDPS S
Sbjct: 14 YAADITVGSNNQKLNVIVDTGSSDLWVPDVNIDCQVTYSDQTADFCKQKG--TYDPSGSS 71
Query: 188 TYANVSCSSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETL 238
+++ TP + I YGD S S G K+T+
Sbjct: 72 ASQDLN---------------TP--------FSIGYGDGSSSQGTLYKDTV 99
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL-RFCYQQKEPIYDPSASRTYANV 192
Y + +GTP ++ +++FDTGS W C C + +DP S T+ N+
Sbjct: 16 YFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQR--FDPRKSSTFQNL 69
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL-RFCYQQKEPIYDPSASRTYANV 192
Y + +GTP ++ +++FDTGS W C C + +DP S T+ N+
Sbjct: 16 YFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQR--FDPRKSSTFQNL 69
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 66/186 (35%), Gaps = 37/186 (19%)
Query: 133 VATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANV 192
VA Y IG K+ + +FDTGS W C + K +YD + S+TY
Sbjct: 18 VANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTKN-LYDSNKSKTYE-- 74
Query: 193 SCSSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFL-- 250
+ GT + T +GFF+K+ +T+ + F+
Sbjct: 75 ----------KDGTKVEMNYVSGTV------------SGFFSKDIVTIANLSFPYKFIEV 112
Query: 251 ---------FGCGQYNRXXXXXXXXXXXXXXDSISLVSQTSRKYKK-YFSYCLPXXXXXT 300
+ GQ++ D + + + K ++ F++ LP
Sbjct: 113 TDTNGFEPAYTLGQFDGIVGLGWKDLSIGSVDPVVVELKNQNKIEQAVFTFYLPFDDKHK 172
Query: 301 GHLTFG 306
G+LT G
Sbjct: 173 GYLTIG 178
>pdb|2EBH|X Chain X, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
Length = 746
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 75 CNKLDGGNAKFPSQAEILQQDQSRVN----SIHSKSRLSKNSVGADVKET-----DATTI 125
+L+ P Q +IL Q ++ + S+ L +NSV D++E DA
Sbjct: 552 VTELENWQVLTPPQGKILGLKQFKLTAGFPTEQSRLPLLENSVSEDLREELMQKIDAIKN 611
Query: 126 PAKDGSVV---ATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQ 175
K S+V A V+ + KD+ L G+ +TW + E + F +Q
Sbjct: 612 DVKMNSLVCMEAGSSDSVSPKVAARLKDMGLEAGMGASITWWRREGGMEFSHQ 664
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 135/356 (37%), Gaps = 58/356 (16%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTWT-----QCEPCL----RFCYQQKEPIYDPSASRT 188
Y + +G+ K+ L++V DTGS W C+ FC + E Y PS+S +
Sbjct: 14 YASDITVGSNKQKLTVVIDTGSSDLWVPDSQVSCQAGQGQDPNFC--KNEGTYSPSSSSS 71
Query: 189 YANVSCSSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPN 248
N++ S+E G G T Q G+ I +G S + FA +T TS D
Sbjct: 72 SQNLNSPF----SIEYGDGTTSQ--GTWYKDTIGFGGISITKQQFAD--VTSTSVD---Q 120
Query: 249 FLFGCGQYNRXXXXXXXXXXXXXXDSISLVSQTSRKYKKYFSYCLPXXXXXTGHLTFGKA 308
+ G G Y + ++S K +S L +G + FG
Sbjct: 121 GILGIG-YKTHEAEGNYDNVPVTLKNQGIIS------KNAYSLYLNSRQATSGQIIFGGV 173
Query: 309 AGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITR 368
S T+ P+ T+D+ + + + V G+ + + V ++DSGT IT
Sbjct: 174 DNAKYSGTLIALPV---TSDNELR-IHLNTVKVAGQSINADVDV------LLDSGTTITY 223
Query: 369 LPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEG 428
L + S F Y L L C ++S V F F++ ++S+
Sbjct: 224 LQQGVADQVISAFNG-QETYDANGNLFYLVDC-------NLSGSV-DFAFDKNAKISVPA 274
Query: 429 SAILI------GSSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFA 478
S G Q L F SD I+G+ ++ +VYD+ + A
Sbjct: 275 SEFTAPLYTEDGQVYDQCQLLFG----TSDYNILGDNFLRSAYIVYDLDDNEISLA 326
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 103/307 (33%), Gaps = 70/307 (22%)
Query: 138 YVVTVGIGTPKKDLSLVFDTGSDLTW-----TQCEP-----CLRFCYQQKEPIYDPSASR 187
Y + IG+ K+ +++ DTGS W C+ FC + + IY P +S
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWVPDASVTCDKPRPGQSADFC--KGKGIYTPKSST 71
Query: 188 TYANVSCSSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDV-- 245
T N+ TP + I YGD S S G K+T+ + +
Sbjct: 72 TSQNLG---------------TP--------FYIGYGDGSSSQGTLYKDTVGFGGASITK 108
Query: 246 ----------FPNFLFGCGQYNRXXXXXXXXXXXXXXDSISLVSQTSRKYKKYFSYCLPX 295
P + G G Y + +++ K +S L
Sbjct: 109 QVFADITKTSIPQGILGIG-YKTNEAAGDYDNVPVTLKNQGVIA------KNAYSLYLNS 161
Query: 296 XXXXTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSS 355
TG + FG S ++ P+ T+D + + L GK + I V
Sbjct: 162 PNAATGQIIFGGVDKAKYSGSLIAVPV---TSDRELR-ITLNSLKAVGKNINGNIDV--- 214
Query: 356 AGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILD------TCYDFSNYTSI 409
++DSGT IT L + F+ + + D ++F N I
Sbjct: 215 ---LLDSGTTITYLQQDVAQDIIDAFQAELKSDGQGHTFYVTDCQTSGTVDFNFDNNAKI 271
Query: 410 SVPVISF 416
SVP F
Sbjct: 272 SVPASEF 278
>pdb|4IT1|A Chain A, Crystal Structure Of Enolase Pfl01_3283 (target
Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
Bound Magnesium, Potassium And Tartrate
pdb|4IT1|B Chain B, Crystal Structure Of Enolase Pfl01_3283 (target
Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
Bound Magnesium, Potassium And Tartrate
pdb|4IT1|C Chain C, Crystal Structure Of Enolase Pfl01_3283 (target
Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
Bound Magnesium, Potassium And Tartrate
pdb|4IT1|D Chain D, Crystal Structure Of Enolase Pfl01_3283 (target
Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
Bound Magnesium, Potassium And Tartrate
Length = 446
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 300 TGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVF---SSA 356
G++ G++ G+ P+ I+ S GLD L+ + + ++ S A
Sbjct: 62 NGYIGLGESYGDAPALAIQ------QQVQSQLIGLDPFNLNQLRRIVQTTVAAHKPASLA 115
Query: 357 GAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSIL 397
GA + G+ ++ AYSA F ++Y P + +L
Sbjct: 116 GAELAPGSHASKAVSNAYSAFEVAFLDLQARYLNVPLVDLL 156
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 74/352 (21%), Positives = 125/352 (35%), Gaps = 67/352 (19%)
Query: 144 IGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLE 203
+G + L+FDTGS W + C K +YD S S++Y +
Sbjct: 22 VGDNHQKFMLIFDTGSANLWVPSKKCNSIGCSTKH-LYDSSKSKSYE------------K 68
Query: 204 SGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTL-------------TSSDVFPNFL 250
GT + I YG + GFF+K+ +TL + D+ P L
Sbjct: 69 DGTKVE-----------ITYGSGTVR-GFFSKDLVTLGYLSLPYKFIEVTDTDDLEP--L 114
Query: 251 FGCGQYNRXXXXXXXXXXXXXXDSISLVSQTSRKYKK-YFSYCLPXXXXXTGHLTFGKAA 309
+ +++ D I + + K + F++ LP +G+LT G
Sbjct: 115 YTAAEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDQALFTFYLPVHDKHSGYLTIGGIE 174
Query: 310 GNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRL 369
+ + L+ F+ +D L V K + A I+DSGT
Sbjct: 175 EKFYEGELTYEKLNH----DLFWQVD---LDVNFGK-----TSMEKANVIVDSGTSTITA 222
Query: 370 PPAAYSALRSTFKKF-MSKYPTAPALSILDTCYDFSNYTSISVPVISF-FFNRGVEVSIE 427
P S + FK + K P P + TC + +P + F N + E
Sbjct: 223 PT---SFINKFFKDLNVIKVPFLPFY--ITTC------NNKDMPTLEFKSANNTYTLEPE 271
Query: 428 GSAILIGSSPKQICLAFAGNSD-DSDVAIIGNVQQKTLEVVYDVAQRRVGFA 478
+ +C+ + D D + I+G+ + V+D + +GFA
Sbjct: 272 YYMEPLLDIDDTLCMLYILPVDIDKNTFILGDPFMRKYFTVFDYDKESIGFA 323
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,171,219
Number of Sequences: 62578
Number of extensions: 524266
Number of successful extensions: 1266
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1043
Number of HSP's gapped (non-prelim): 191
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)