Query 011556
Match_columns 483
No_of_seqs 341 out of 1603
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 02:40:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.5E-75 3.3E-80 609.5 43.5 394 61-483 22-429 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 1.7E-59 3.7E-64 485.8 37.7 341 132-483 41-397 (398)
3 cd05472 cnd41_like Chloroplast 100.0 5.3E-59 1.2E-63 465.1 34.0 297 137-482 1-299 (299)
4 cd05489 xylanase_inhibitor_I_l 100.0 1E-57 2.2E-62 465.7 33.1 322 144-480 2-361 (362)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 7.6E-56 1.6E-60 447.5 31.4 296 136-483 2-326 (326)
6 cd05478 pepsin_A Pepsin A, asp 100.0 5E-55 1.1E-59 440.0 32.0 299 132-479 5-317 (317)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 2.3E-54 4.9E-59 436.7 31.9 301 133-479 2-325 (325)
8 cd05486 Cathespin_E Cathepsin 100.0 2.1E-54 4.4E-59 435.3 29.5 294 138-479 1-316 (316)
9 PTZ00165 aspartyl protease; Pr 100.0 1.2E-53 2.5E-58 447.7 35.8 311 123-483 109-449 (482)
10 cd05477 gastricsin Gastricsins 100.0 1.8E-53 3.8E-58 428.9 32.7 299 135-480 1-318 (318)
11 cd05488 Proteinase_A_fungi Fun 100.0 2.5E-53 5.4E-58 428.1 31.1 298 132-479 5-320 (320)
12 cd05487 renin_like Renin stimu 100.0 3.5E-53 7.6E-58 428.1 32.0 300 132-480 3-326 (326)
13 cd06098 phytepsin Phytepsin, a 100.0 7E-53 1.5E-57 424.3 31.4 290 132-479 5-317 (317)
14 cd05485 Cathepsin_D_like Cathe 100.0 1.9E-52 4.2E-57 423.1 31.4 301 132-479 6-329 (329)
15 cd05473 beta_secretase_like Be 100.0 1.3E-52 2.7E-57 430.3 30.4 312 136-483 2-348 (364)
16 PTZ00147 plasmepsin-1; Provisi 100.0 2.1E-51 4.5E-56 427.6 32.9 306 121-481 126-450 (453)
17 cd05475 nucellin_like Nucellin 100.0 5.7E-51 1.2E-55 401.9 29.5 258 136-482 1-273 (273)
18 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.2E-50 2.6E-55 421.2 33.3 307 121-481 125-449 (450)
19 cd05476 pepsin_A_like_plant Ch 100.0 8.7E-51 1.9E-55 399.0 29.8 256 137-482 1-265 (265)
20 cd06097 Aspergillopepsin_like 100.0 1.3E-48 2.9E-53 386.1 26.2 265 138-479 1-278 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 3.5E-47 7.5E-52 378.9 29.4 273 137-480 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 2.5E-46 5.4E-51 375.8 23.7 299 137-480 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 6.5E-45 1.4E-49 359.3 28.6 268 138-479 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 2.5E-33 5.4E-38 255.0 14.3 159 138-307 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 100.0 5.7E-28 1.2E-32 219.4 15.6 149 331-479 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 7.3E-23 1.6E-27 173.3 12.0 105 140-270 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.7 0.00012 2.5E-09 59.6 7.7 93 137-272 2-94 (96)
28 PF13650 Asp_protease_2: Aspar 95.6 0.087 1.9E-06 41.9 8.6 89 140-271 1-89 (90)
29 TIGR02281 clan_AA_DTGA clan AA 95.5 0.1 2.2E-06 44.9 8.8 96 134-272 8-103 (121)
30 cd05479 RP_DDI RP_DDI; retrope 94.4 0.14 3E-06 44.1 6.8 103 339-477 21-124 (124)
31 cd05479 RP_DDI RP_DDI; retrope 91.8 1.4 2.9E-05 37.9 9.0 92 135-272 14-107 (124)
32 TIGR02281 clan_AA_DTGA clan AA 91.4 1.4 2.9E-05 37.8 8.6 36 329-377 9-44 (121)
33 cd05484 retropepsin_like_LTR_2 90.2 0.32 7E-06 39.2 3.4 30 138-169 1-30 (91)
34 TIGR03698 clan_AA_DTGF clan AA 90.1 1.6 3.6E-05 36.4 7.7 24 452-475 84-107 (107)
35 PF08284 RVP_2: Retroviral asp 89.3 0.96 2.1E-05 39.6 5.9 28 453-480 105-132 (135)
36 PF07172 GRP: Glycine rich pro 85.8 0.66 1.4E-05 37.9 2.6 26 1-26 1-26 (95)
37 PF13975 gag-asp_proteas: gag- 83.6 1.8 4E-05 33.2 4.1 34 134-169 5-38 (72)
38 PF00077 RVP: Retroviral aspar 80.7 2.4 5.2E-05 34.5 4.1 28 139-168 7-34 (100)
39 cd05484 retropepsin_like_LTR_2 79.9 2.5 5.4E-05 33.9 3.8 30 338-377 4-33 (91)
40 PF13650 Asp_protease_2: Aspar 79.2 2.1 4.5E-05 33.7 3.1 29 339-377 3-31 (90)
41 COG3577 Predicted aspartyl pro 77.7 16 0.00035 34.1 8.7 86 124-251 95-180 (215)
42 cd05483 retropepsin_like_bacte 76.6 4.3 9.3E-05 32.2 4.3 29 339-377 7-35 (96)
43 PF13975 gag-asp_proteas: gag- 74.7 7.4 0.00016 29.8 5.0 29 339-377 13-41 (72)
44 PF12384 Peptidase_A2B: Ty3 tr 74.6 14 0.0003 33.3 7.2 54 315-378 15-68 (177)
45 cd05482 HIV_retropepsin_like R 67.6 6.8 0.00015 31.5 3.4 25 141-167 2-26 (87)
46 PF11925 DUF3443: Protein of u 67.0 68 0.0015 32.8 11.0 51 222-274 83-150 (370)
47 cd06095 RP_RTVL_H_like Retrope 62.3 9.2 0.0002 30.3 3.3 27 141-169 2-28 (86)
48 cd06095 RP_RTVL_H_like Retrope 59.2 9.9 0.00021 30.1 3.0 29 339-377 3-31 (86)
49 PF00077 RVP: Retroviral aspar 51.5 9.5 0.00021 30.9 1.7 27 338-374 9-35 (100)
50 COG3577 Predicted aspartyl pro 46.6 36 0.00077 31.9 4.7 36 329-377 103-138 (215)
51 cd05481 retropepsin_like_LTR_1 43.9 22 0.00047 28.8 2.7 21 358-378 13-33 (93)
52 PF12384 Peptidase_A2B: Ty3 tr 41.6 33 0.00072 30.9 3.6 29 139-167 34-62 (177)
53 COG5550 Predicted aspartyl pro 41.3 1.7E+02 0.0037 25.1 7.7 33 443-475 85-117 (125)
54 PF09668 Asp_protease: Asparty 38.7 38 0.00082 29.2 3.5 29 339-377 29-57 (124)
55 PF14979 TMEM52: Transmembrane 32.6 1.5E+02 0.0034 26.1 6.2 62 39-100 66-135 (154)
56 PRK10081 entericidin B membran 30.5 60 0.0013 23.0 2.7 17 1-17 1-17 (48)
57 COG5510 Predicted small secret 29.4 61 0.0013 22.3 2.5 19 1-19 1-19 (44)
58 PF09668 Asp_protease: Asparty 29.1 90 0.002 26.9 4.2 36 136-174 23-58 (124)
59 PF02160 Peptidase_A3: Caulifl 23.9 2E+02 0.0043 27.0 5.8 28 451-479 90-117 (201)
60 PF04360 Serglycin: Serglycin 21.4 58 0.0013 28.5 1.6 23 161-183 33-57 (150)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.5e-75 Score=609.50 Aligned_cols=394 Identities=34% Similarity=0.641 Sum_probs=327.8
Q ss_pred CCceEEEEEcCCCCCCCCCCCC-CCCCCHHHHHHHhHHHHHHhhhccccccCCCCCCccCCCceeeecccCCccCcceEE
Q 011556 61 ERKATLKVVHKHGPCNKLDGGN-AKFPSQAEILQQDQSRVNSIHSKSRLSKNSVGADVKETDATTIPAKDGSVVATGDYV 139 (483)
Q Consensus 61 ~~~~~~~l~hr~~p~sp~~~~~-~~~~~~~~~~~~d~~R~~~l~~r~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~Y~ 139 (483)
+++++++|+||++||||+.... ...+.++++++|+++|++++.++ .. ...|+..+...++++|+
T Consensus 22 ~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~-------------~~~~~~~~~~~~~~~Y~ 86 (431)
T PLN03146 22 KGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPT--DA-------------SPNDPQSDLISNGGEYL 86 (431)
T ss_pred CCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhc--cc-------------cCCccccCcccCCccEE
Confidence 4679999999999999985432 23456788899999999888655 21 11233334345678999
Q ss_pred EEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCCC-CCce
Q 011556 140 VTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAG-STCV 218 (483)
Q Consensus 140 ~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~-~~c~ 218 (483)
++|+||||+|++.|+|||||+++||+|.+|.. |+.|.++.|||++|+||+.++|+++.|..+.. ...|.. +.|.
T Consensus 87 v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~-C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~----~~~c~~~~~c~ 161 (431)
T PLN03146 87 MNISIGTPPVPILAIADTGSDLIWTQCKPCDD-CYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN----QASCSDENTCT 161 (431)
T ss_pred EEEEcCCCCceEEEEECCCCCcceEcCCCCcc-cccCCCCcccCCCCCCCcccCCCCcccccCCC----CCCCCCCCCCe
Confidence 99999999999999999999999999999965 99888899999999999999999999987653 234653 5699
Q ss_pred eeEEcCCCCeEEEEEEEEEEEecCC----CccCceEEEEEEecCCCcc-CcceEeecCCCCCchhhhhccccCceEEEEc
Q 011556 219 YGIEYGDNSFSAGFFAKETLTLTSS----DVFPNFLFGCGQYNRGLYG-QAAGLLGLGQDSISLVSQTSRKYKKYFSYCL 293 (483)
Q Consensus 219 y~i~Ygdgs~~~G~~~~Dtl~l~~~----~~~~~~~FG~~~~~~g~~~-~~~GilGLg~~~~Sl~sQ~~~~~~~~FS~cL 293 (483)
|.+.|+||+.+.|++++|+|+|++. ..++++.|||++.+.+.|. ..+||||||++++|+++|+...++++|||||
T Consensus 162 y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL 241 (431)
T PLN03146 162 YSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCL 241 (431)
T ss_pred eEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEEC
Confidence 9999999988899999999999873 2589999999999887664 5899999999999999999876677999999
Q ss_pred CCCC---CCCceEEecCCCCCCCC-CCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccC---CCcEEEcccCcc
Q 011556 294 PSSS---SSTGHLTFGKAAGNGPS-KTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFS---SAGAIIDSGTVI 366 (483)
Q Consensus 294 ~~~~---~~~G~L~fGg~d~~~~~-~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~---~~~~iiDSGT~~ 366 (483)
++.. ...|.|+||+.. ++. ..+.||||+.+.. +.+|+|+|++|+||+++++++...|. .+++||||||++
T Consensus 242 ~~~~~~~~~~g~l~fG~~~--~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~ 318 (431)
T PLN03146 242 VPLSSDSNGTSKINFGTNA--IVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTL 318 (431)
T ss_pred CCCCCCCCCcceEEeCCcc--ccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccc
Confidence 7632 247999999842 443 4589999986432 57999999999999999988776552 257999999999
Q ss_pred ccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEEcCCCeEEEEEEe
Q 011556 367 TRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAFAG 446 (483)
Q Consensus 367 t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl~~~~ 446 (483)
|+||+++|++|+++|.+.+...+.......+++||+... ...+|+|+|+|+ |+++.|++++|+++...+..|+++.+
T Consensus 319 t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~P~i~~~F~-Ga~~~l~~~~~~~~~~~~~~Cl~~~~ 395 (431)
T PLN03146 319 TLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTS--DIKLPIITAHFT-GADVKLQPLNTFVKVSEDLVCFAMIP 395 (431)
T ss_pred eecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCC--CCCCCeEEEEEC-CCeeecCcceeEEEcCCCcEEEEEec
Confidence 999999999999999998865443333445789998543 257999999995 89999999999998777788999886
Q ss_pred CCCCCCceEecHhhhcceEEEEECCCCEEEEeeCCCC
Q 011556 447 NSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGCS 483 (483)
Q Consensus 447 ~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 483 (483)
. .+.+|||+.|||++||+||++++|||||+++|+
T Consensus 396 ~---~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~ 429 (431)
T PLN03146 396 T---SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT 429 (431)
T ss_pred C---CCceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence 5 236999999999999999999999999999995
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-59 Score=485.82 Aligned_cols=341 Identities=40% Similarity=0.737 Sum_probs=288.6
Q ss_pred ccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCC
Q 011556 132 VVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQ 211 (483)
Q Consensus 132 ~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~ 211 (483)
...+++|+++|.||||+|.|.|+|||||+++||+|.+|...|+.+.++.|||++|+||+.+.|.++.|...... .
T Consensus 41 ~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~-----~ 115 (398)
T KOG1339|consen 41 SYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQS-----C 115 (398)
T ss_pred cccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccC-----c
Confidence 45678999999999999999999999999999999999635988766779999999999999999999987532 3
Q ss_pred CCCCCceeeEEcCCCCeEEEEEEEEEEEecCC--CccCceEEEEEEecCCC-c--cCcceEeecCCCCCchhhhhccccC
Q 011556 212 CAGSTCVYGIEYGDNSFSAGFFAKETLTLTSS--DVFPNFLFGCGQYNRGL-Y--GQAAGLLGLGQDSISLVSQTSRKYK 286 (483)
Q Consensus 212 C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~--~~~~~~~FG~~~~~~g~-~--~~~~GilGLg~~~~Sl~sQ~~~~~~ 286 (483)
|.+..|.|.+.|+||+.++|++++|+|+|++. ..++++.|||+..+.+. . ...+||||||++++++.+|+...+.
T Consensus 116 ~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~~~ 195 (398)
T KOG1339|consen 116 SPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSFYN 195 (398)
T ss_pred ccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccccccccccceEeecCCCCccceeecccccC
Confidence 34688999999999888999999999999983 57888999999999763 2 4689999999999999999988753
Q ss_pred --ceEEEEcCCCCC---CCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCC--CcEE
Q 011556 287 --KYFSYCLPSSSS---STGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSS--AGAI 359 (483)
Q Consensus 287 --~~FS~cL~~~~~---~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~--~~~i 359 (483)
++|||||..... ..|.|+||+.|..++.+.+.|+||+.++. .||.|.|.+|+||++. +++...|.. +++|
T Consensus 196 ~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~--~~y~v~l~~I~vgg~~-~~~~~~~~~~~~~~i 272 (398)
T KOG1339|consen 196 AINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS--TYYQVNLDGISVGGKR-PIGSSLFCTDGGGAI 272 (398)
T ss_pred CceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC--ccEEEEEeEEEECCcc-CCCcceEecCCCCEE
Confidence 459999998754 37999999999988999999999999543 5999999999999987 666555543 6899
Q ss_pred EcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEEcCCCe
Q 011556 360 IDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQ 439 (483)
Q Consensus 360 iDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~ 439 (483)
+||||++++||+++|++|.++|.+.+.. .......+..||...... ..+|+|+|+|.+|+++.|++++|+++.....
T Consensus 273 iDSGTs~t~lp~~~y~~i~~~~~~~~~~--~~~~~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~ 349 (398)
T KOG1339|consen 273 IDSGTSLTYLPTSAYNALREAIGAEVSV--VGTDGEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPPKNYLVEVSDGG 349 (398)
T ss_pred EECCcceeeccHHHHHHHHHHHHhheec--cccCCceeeecccCCCCc-ccCCcEEEEECCCcEEEeCccceEEEECCCC
Confidence 9999999999999999999999986410 111223455898765443 5699999999769999999999999876544
Q ss_pred E-EEEEEeCCCCCCceEecHhhhcceEEEEECC-CCEEEEee--CCCC
Q 011556 440 I-CLAFAGNSDDSDVAIIGNVQQKTLEVVYDVA-QRRVGFAP--KGCS 483 (483)
Q Consensus 440 ~-Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~-~~rIGFa~--~~C~ 483 (483)
. |+++.........||||+.|||+++++||.. ++||||++ ..|+
T Consensus 350 ~~Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 350 GVCLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred CceeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 4 9987765333358999999999999999999 99999999 7885
No 3
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=5.3e-59 Score=465.10 Aligned_cols=297 Identities=56% Similarity=1.032 Sum_probs=256.7
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCCCCC
Q 011556 137 DYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAGST 216 (483)
Q Consensus 137 ~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~ 216 (483)
+|+++|.||||||++.|+|||||+++||+|.+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------------
Confidence 599999999999999999999999999998754
Q ss_pred ceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCCccCcceEeecCCCCCchhhhhccccCceEEEEcCCC
Q 011556 217 CVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLYGQAAGLLGLGQDSISLVSQTSRKYKKYFSYCLPSS 296 (483)
Q Consensus 217 c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~~~~~~GilGLg~~~~Sl~sQ~~~~~~~~FS~cL~~~ 296 (483)
|.|.+.|++|+.++|.+++|+|+|++...++++.|||+....+.+...+||||||+..+++++|+....+++||+||++.
T Consensus 34 ~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~~~~~~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~~ 113 (299)
T cd05472 34 CLYQVSYGDGSYTTGDLATDTLTLGSSDVVPGFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDR 113 (299)
T ss_pred CeeeeEeCCCceEEEEEEEEEEEeCCCCccCCEEEECCccCCCccCCCCEEEECCCCcchHHHHhhHhhcCceEEEccCC
Confidence 27899999998789999999999997437899999999988776668999999999999999999876789999999875
Q ss_pred C-CCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccHHHHH
Q 011556 297 S-SSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYS 375 (483)
Q Consensus 297 ~-~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~ 375 (483)
. ...|+|+|||+|++ .+++.|+|++.++..+.+|.|+|++|+||++.+.+++.....+++||||||++++||+++|+
T Consensus 114 ~~~~~G~l~fGg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~ 191 (299)
T cd05472 114 SSSSSGYLSFGAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYA 191 (299)
T ss_pred CCCCCceEEeCCcccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHH
Confidence 4 45899999999976 88999999998665567999999999999999876533233367999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEE-cCCCeEEEEEEeCCCCCCce
Q 011556 376 ALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIG-SSPKQICLAFAGNSDDSDVA 454 (483)
Q Consensus 376 ~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~-~~~~~~Cl~~~~~~~~~~~~ 454 (483)
+|.+++.+.+...........++.||+.++.....+|+|+|+|.+|++++|++++|++. ...+..|+++.+.+.....+
T Consensus 192 ~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~~ 271 (299)
T cd05472 192 ALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTSDDGGLS 271 (299)
T ss_pred HHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCCCCCCCE
Confidence 99999998765443333444556799887766678999999997689999999999984 34567899888764345679
Q ss_pred EecHhhhcceEEEEECCCCEEEEeeCCC
Q 011556 455 IIGNVQQKTLEVVYDVAQRRVGFAPKGC 482 (483)
Q Consensus 455 IlG~~fl~~~~vvfD~~~~rIGFa~~~C 482 (483)
|||+.|||++|+|||++++|||||+++|
T Consensus 272 ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 272 IIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred EEchHHccceEEEEECCCCEEeEecCCC
Confidence 9999999999999999999999999999
No 4
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1e-57 Score=465.70 Aligned_cols=322 Identities=28% Similarity=0.491 Sum_probs=265.3
Q ss_pred eCCCCce-EEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCC-------CCCCCCCC
Q 011556 144 IGTPKKD-LSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTG-------MTPQCAGS 215 (483)
Q Consensus 144 iGtP~q~-~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~-------~~~~C~~~ 215 (483)
+|||-.+ +.|+|||||+++||||.+| +|+||..++|+++.|+.+..+.. +...|.++
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~---------------~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~ 66 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAG---------------HSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNN 66 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCC---------------CcCCCCccCcCChhhccccccCCCccccCCCCCCCCCC
Confidence 5888777 9999999999999998753 58899999999999987654311 12367777
Q ss_pred CceeeEE-cCCCCeEEEEEEEEEEEecCC-------CccCceEEEEEEecC--CCccCcceEeecCCCCCchhhhhcccc
Q 011556 216 TCVYGIE-YGDNSFSAGFFAKETLTLTSS-------DVFPNFLFGCGQYNR--GLYGQAAGLLGLGQDSISLVSQTSRKY 285 (483)
Q Consensus 216 ~c~y~i~-Ygdgs~~~G~~~~Dtl~l~~~-------~~~~~~~FG~~~~~~--g~~~~~~GilGLg~~~~Sl~sQ~~~~~ 285 (483)
.|.|... |++|+.+.|++++|+|+|+.. ..++++.|||++++. +.+..++||||||++++|+++|+....
T Consensus 67 ~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~ 146 (362)
T cd05489 67 TCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAF 146 (362)
T ss_pred cCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhc
Confidence 8999765 889988999999999999742 168899999998864 344568999999999999999998764
Q ss_pred --CceEEEEcCCCCCCCceEEecCCCCCCC------CCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccC---
Q 011556 286 --KKYFSYCLPSSSSSTGHLTFGKAAGNGP------SKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFS--- 354 (483)
Q Consensus 286 --~~~FS~cL~~~~~~~G~L~fGg~d~~~~------~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~--- 354 (483)
.++|||||++..+..|+|+||+.+..++ .+.++||||+.++..+.+|+|+|++|+||++++.+++..+.
T Consensus 147 ~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~ 226 (362)
T cd05489 147 GVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDR 226 (362)
T ss_pred CCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccc
Confidence 3899999997655589999999886554 37899999998765568999999999999999988655432
Q ss_pred --CCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCC-CCCCccceecCCC----cccccCeEEEEEcC-CcEEEE
Q 011556 355 --SAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPA-LSILDTCYDFSNY----TSISVPVISFFFNR-GVEVSI 426 (483)
Q Consensus 355 --~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~-~~~~~~C~~~~~~----~~~~~P~i~~~f~g-g~~~~l 426 (483)
.+++||||||++|+||+++|++|.++|.+++...+.... ....+.||+.... ....+|+|+|+|+| |++++|
T Consensus 227 ~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l 306 (362)
T cd05489 227 LGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTI 306 (362)
T ss_pred cCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEE
Confidence 268999999999999999999999999998865443222 2224789986532 13679999999987 799999
Q ss_pred cCCceEEEcCCCeEEEEEEeCCCC-CCceEecHhhhcceEEEEECCCCEEEEeeC
Q 011556 427 EGSAILIGSSPKQICLAFAGNSDD-SDVAIIGNVQQKTLEVVYDVAQRRVGFAPK 480 (483)
Q Consensus 427 ~~~~~~~~~~~~~~Cl~~~~~~~~-~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 480 (483)
++++|+++...+..|++|...+.. ...||||+.|||++|++||++++|||||+.
T Consensus 307 ~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 307 FGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred cCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 999999998777889999876432 457999999999999999999999999974
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=7.6e-56 Score=447.52 Aligned_cols=296 Identities=26% Similarity=0.487 Sum_probs=249.2
Q ss_pred ceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCCCC
Q 011556 136 GDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAGS 215 (483)
Q Consensus 136 ~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~ 215 (483)
+.|+++|+||||+|++.|+|||||+++||+|.+|.. |..+..+.|||++|+|++.++|++..|.. ...|.++
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~-c~~~~~~~y~~~~Sst~~~~~C~~~~c~~-------~~~~~~~ 73 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKN-CGIHMEPPYNLNNSITSSILYCDCNKCCY-------CLSCLNN 73 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCC-cCCCCCCCcCcccccccccccCCCccccc-------cCcCCCC
Confidence 589999999999999999999999999999999965 98777789999999999999999999953 2357778
Q ss_pred CceeeEEcCCCCeEEEEEEEEEEEecCCCccC-------ceEEEEEEecCCCcc--CcceEeecCCCCCch--------h
Q 011556 216 TCVYGIEYGDNSFSAGFFAKETLTLTSSDVFP-------NFLFGCGQYNRGLYG--QAAGLLGLGQDSISL--------V 278 (483)
Q Consensus 216 ~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~-------~~~FG~~~~~~g~~~--~~~GilGLg~~~~Sl--------~ 278 (483)
.|.|.+.|++|+.+.|.+++|+|+|++. .++ ++.|||+....+.+. ..+||||||+...+. .
T Consensus 74 ~~~~~i~Y~~gs~~~G~~~~D~v~lg~~-~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~ 152 (326)
T cd06096 74 KCEYSISYSEGSSISGFYFSDFVSFESY-LNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLF 152 (326)
T ss_pred cCcEEEEECCCCceeeEEEEEEEEeccC-CCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHH
Confidence 8999999999988899999999999875 332 578999998876553 689999999987531 1
Q ss_pred hhhccc-cCceEEEEcCCCCCCCceEEecCCCCCCCC----------CCceeeeCccCCCCCccEEEEEeEEEECceecc
Q 011556 279 SQTSRK-YKKYFSYCLPSSSSSTGHLTFGKAAGNGPS----------KTIKFTPLSTATADSSFYGLDIIGLSVGGKKLP 347 (483)
Q Consensus 279 sQ~~~~-~~~~FS~cL~~~~~~~G~L~fGg~d~~~~~----------~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~ 347 (483)
.|.... ..++||+||++. .|+|+|||+|++++. +++.|+|+.. ..+|.|.+++|+|+++...
T Consensus 153 ~~~~~~~~~~~FS~~l~~~---~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~----~~~y~v~l~~i~vg~~~~~ 225 (326)
T cd06096 153 TKRPKLKKDKIFSICLSED---GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR----KYYYYVKLEGLSVYGTTSN 225 (326)
T ss_pred HhcccccCCceEEEEEcCC---CeEEEECccChhhhcccccccccccCCceEEeccC----CceEEEEEEEEEEcccccc
Confidence 222222 248999999963 699999999987776 7899999987 5789999999999988611
Q ss_pred -cCCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEE
Q 011556 348 -IPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSI 426 (483)
Q Consensus 348 -~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l 426 (483)
.... ...+||||||++++||+++|++|.+++ |+|+|+|.+|+++.+
T Consensus 226 ~~~~~---~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------------P~i~~~f~~g~~~~i 272 (326)
T cd06096 226 SGNTK---GLGMLVDSGSTLSHFPEDLYNKINNFF------------------------------PTITIIFENNLKIDW 272 (326)
T ss_pred eeccc---CCCEEEeCCCCcccCCHHHHHHHHhhc------------------------------CcEEEEEcCCcEEEE
Confidence 1111 156999999999999999999998776 899999966899999
Q ss_pred cCCceEEEcCCCeEEEEEEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCCCC
Q 011556 427 EGSAILIGSSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGCS 483 (483)
Q Consensus 427 ~~~~~~~~~~~~~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 483 (483)
+|++|++.......|+++... .+.+|||++|||++|+|||++++|||||+++|.
T Consensus 273 ~p~~y~~~~~~~~c~~~~~~~---~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 273 KPSSYLYKKESFWCKGGEKSV---SNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred CHHHhccccCCceEEEEEecC---CCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 999999886555556666543 357999999999999999999999999999995
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=5e-55 Score=440.00 Aligned_cols=299 Identities=23% Similarity=0.425 Sum_probs=250.9
Q ss_pred ccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCC
Q 011556 132 VVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL-RFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTP 210 (483)
Q Consensus 132 ~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~-~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~ 210 (483)
+..+.+|+++|.||||+|++.|+|||||+++||+|..|. ..|.. ++.|||++|+|++...
T Consensus 5 n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~--~~~f~~~~Sst~~~~~----------------- 65 (317)
T cd05478 5 NYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSN--HNRFNPRQSSTYQSTG----------------- 65 (317)
T ss_pred cccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccc--cCcCCCCCCcceeeCC-----------------
Confidence 345789999999999999999999999999999999994 34654 4899999999998864
Q ss_pred CCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCCc---cCcceEeecCCCCCc------hhhhh
Q 011556 211 QCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLY---GQAAGLLGLGQDSIS------LVSQT 281 (483)
Q Consensus 211 ~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~~---~~~~GilGLg~~~~S------l~sQ~ 281 (483)
|.|.+.|++|+ +.|.+++|+|+|++. .++++.|||++...+.+ ...+||||||++.++ ++.|+
T Consensus 66 ------~~~~~~yg~gs-~~G~~~~D~v~ig~~-~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L 137 (317)
T cd05478 66 ------QPLSIQYGTGS-MTGILGYDTVQVGGI-SDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNM 137 (317)
T ss_pred ------cEEEEEECCce-EEEEEeeeEEEECCE-EECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHH
Confidence 58999999997 799999999999984 89999999998876643 257999999987543 45555
Q ss_pred ccc---cCceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcE
Q 011556 282 SRK---YKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGA 358 (483)
Q Consensus 282 ~~~---~~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~ 358 (483)
..+ .+++||+||.+.....|+|+|||+|++++.++++|+|+.. +.+|.|.+++|+||++.+..... ..+
T Consensus 138 ~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~----~~~w~v~l~~v~v~g~~~~~~~~----~~~ 209 (317)
T cd05478 138 MSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTA----ETYWQITVDSVTINGQVVACSGG----CQA 209 (317)
T ss_pred HhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCC----CcEEEEEeeEEEECCEEEccCCC----CEE
Confidence 433 1689999999876567999999999989999999999976 68999999999999998865432 469
Q ss_pred EEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEEcCCC
Q 011556 359 IIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPK 438 (483)
Q Consensus 359 iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~ 438 (483)
||||||++++||+++|++|.+++++... . ..+|.++|.....+|.|+|+| +|+++.|++++|++.. .
T Consensus 210 iiDTGts~~~lp~~~~~~l~~~~~~~~~----~------~~~~~~~C~~~~~~P~~~f~f-~g~~~~i~~~~y~~~~--~ 276 (317)
T cd05478 210 IVDTGTSLLVGPSSDIANIQSDIGASQN----Q------NGEMVVNCSSISSMPDVVFTI-NGVQYPLPPSAYILQD--Q 276 (317)
T ss_pred EECCCchhhhCCHHHHHHHHHHhCCccc----c------CCcEEeCCcCcccCCcEEEEE-CCEEEEECHHHheecC--C
Confidence 9999999999999999999999865421 1 124555555556799999999 7899999999999865 6
Q ss_pred eEEE-EEEeCCCCCCceEecHhhhcceEEEEECCCCEEEEee
Q 011556 439 QICL-AFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAP 479 (483)
Q Consensus 439 ~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 479 (483)
..|+ +|... +..+.||||++|||++|+|||++++|||||+
T Consensus 277 ~~C~~~~~~~-~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 277 GSCTSGFQSM-GLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred CEEeEEEEeC-CCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 7898 56654 3346899999999999999999999999996
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=2.3e-54 Score=436.71 Aligned_cols=301 Identities=25% Similarity=0.449 Sum_probs=245.2
Q ss_pred cCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc---ccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCC
Q 011556 133 VATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL---RFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMT 209 (483)
Q Consensus 133 ~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~---~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~ 209 (483)
+.+.+|+++|.||||+|++.|+|||||+++||+|..|. ..|..+ +.|||++|+||+...
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~--~~y~~~~SsT~~~~~---------------- 63 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLH--HKYNSSKSSTYVKNG---------------- 63 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCc--CcCCcccCcceeeCC----------------
Confidence 45789999999999999999999999999999999995 257654 799999999998732
Q ss_pred CCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCC-Cc--cCcceEeecCCCCCch------hhh
Q 011556 210 PQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRG-LY--GQAAGLLGLGQDSISL------VSQ 280 (483)
Q Consensus 210 ~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g-~~--~~~~GilGLg~~~~Sl------~sQ 280 (483)
|.|.+.|++|+ +.|.+++|+|+|++. .++++.|||++...+ .| ...+||||||++.++. +.|
T Consensus 64 -------~~~~i~Yg~G~-~~G~~~~D~v~~g~~-~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 134 (325)
T cd05490 64 -------TEFAIQYGSGS-LSGYLSQDTVSIGGL-QVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDN 134 (325)
T ss_pred -------cEEEEEECCcE-EEEEEeeeEEEECCE-EEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHH
Confidence 69999999996 799999999999985 899999999988765 23 2679999999987653 233
Q ss_pred hccc---cCceEEEEcCCCCC--CCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCC
Q 011556 281 TSRK---YKKYFSYCLPSSSS--STGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSS 355 (483)
Q Consensus 281 ~~~~---~~~~FS~cL~~~~~--~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~ 355 (483)
+..+ .+++||+||++..+ ..|+|+|||+|++++.+++.|+|+.. ..+|.|++++|+||++.......
T Consensus 135 l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~~~---- 206 (325)
T cd05490 135 IMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTR----KAYWQIHMDQVDVGSGLTLCKGG---- 206 (325)
T ss_pred HHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCc----ceEEEEEeeEEEECCeeeecCCC----
Confidence 3322 26899999986432 37999999999989999999999976 67999999999999875432221
Q ss_pred CcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEEc
Q 011556 356 AGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGS 435 (483)
Q Consensus 356 ~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~ 435 (483)
..+||||||+++++|++++++|.+++++. +...+ +|.++|.....+|+|+|+| ||+++.|++++|+++.
T Consensus 207 ~~aiiDSGTt~~~~p~~~~~~l~~~~~~~----~~~~~------~~~~~C~~~~~~P~i~f~f-gg~~~~l~~~~y~~~~ 275 (325)
T cd05490 207 CEAIVDTGTSLITGPVEEVRALQKAIGAV----PLIQG------EYMIDCEKIPTLPVISFSL-GGKVYPLTGEDYILKV 275 (325)
T ss_pred CEEEECCCCccccCCHHHHHHHHHHhCCc----cccCC------CEEecccccccCCCEEEEE-CCEEEEEChHHeEEec
Confidence 46999999999999999999999988642 22111 2334444456799999999 7899999999999875
Q ss_pred C--CCeEEE-EEEeCC---CCCCceEecHhhhcceEEEEECCCCEEEEee
Q 011556 436 S--PKQICL-AFAGNS---DDSDVAIIGNVQQKTLEVVYDVAQRRVGFAP 479 (483)
Q Consensus 436 ~--~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 479 (483)
. ....|+ +|...+ .....||||++|||++|+|||++++|||||+
T Consensus 276 ~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 276 SQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred cCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 3 345798 576532 2345799999999999999999999999996
No 8
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=2.1e-54 Score=435.32 Aligned_cols=294 Identities=24% Similarity=0.451 Sum_probs=243.2
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCCCCC
Q 011556 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL-RFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAGST 216 (483)
Q Consensus 138 Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~-~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~ 216 (483)
|+++|+||||+|+++|+|||||+++||+|..|. ..|..+ +.|||++|+||+...
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~--~~y~~~~SsT~~~~~----------------------- 55 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKH--NRFQPSESSTYVSNG----------------------- 55 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCcc--ceECCCCCcccccCC-----------------------
Confidence 889999999999999999999999999999994 358755 799999999998754
Q ss_pred ceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCC-Cc--cCcceEeecCCCCCch------h----hhhcc
Q 011556 217 CVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRG-LY--GQAAGLLGLGQDSISL------V----SQTSR 283 (483)
Q Consensus 217 c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g-~~--~~~~GilGLg~~~~Sl------~----sQ~~~ 283 (483)
|.|.+.|++|+ +.|.+++|+|+|++. .++++.|||+....+ .| ...+||||||++.++. . +|...
T Consensus 56 ~~~~i~Yg~g~-~~G~~~~D~v~ig~~-~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i 133 (316)
T cd05486 56 EAFSIQYGTGS-LTGIIGIDQVTVEGI-TVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLV 133 (316)
T ss_pred cEEEEEeCCcE-EEEEeeecEEEECCE-EEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCC
Confidence 69999999996 799999999999984 899999999987765 23 2689999999987653 3 33323
Q ss_pred ccCceEEEEcCCCC--CCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEEEc
Q 011556 284 KYKKYFSYCLPSSS--SSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIID 361 (483)
Q Consensus 284 ~~~~~FS~cL~~~~--~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiD 361 (483)
. .++||+||.+.. ...|+|+|||+|++++.+++.|+|+.. ..+|.|.+++|+||++.+..+.. ..+|||
T Consensus 134 ~-~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~----~~~w~v~l~~i~v~g~~~~~~~~----~~aiiD 204 (316)
T cd05486 134 E-LPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTV----QGYWQIQLDNIQVGGTVIFCSDG----CQAIVD 204 (316)
T ss_pred C-CCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCC----ceEEEEEeeEEEEecceEecCCC----CEEEEC
Confidence 2 589999998643 247999999999999999999999986 67999999999999987754332 469999
Q ss_pred ccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEEc--CCCe
Q 011556 362 SGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGS--SPKQ 439 (483)
Q Consensus 362 SGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~--~~~~ 439 (483)
|||++++||++++++|.+++++. ... .+|.++|.....+|+|+|+| +|++++|++++|++.. ....
T Consensus 205 TGTs~~~lP~~~~~~l~~~~~~~-----~~~------~~~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~~ 272 (316)
T cd05486 205 TGTSLITGPSGDIKQLQNYIGAT-----ATD------GEYGVDCSTLSLMPSVTFTI-NGIPYSLSPQAYTLEDQSDGGG 272 (316)
T ss_pred CCcchhhcCHHHHHHHHHHhCCc-----ccC------CcEEEeccccccCCCEEEEE-CCEEEEeCHHHeEEecccCCCC
Confidence 99999999999999998887542 111 23444555556799999999 7899999999999874 3456
Q ss_pred EEE-EEEeCC---CCCCceEecHhhhcceEEEEECCCCEEEEee
Q 011556 440 ICL-AFAGNS---DDSDVAIIGNVQQKTLEVVYDVAQRRVGFAP 479 (483)
Q Consensus 440 ~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 479 (483)
.|+ +|.... ...+.||||++|||++|+|||.+++|||||+
T Consensus 273 ~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 273 YCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 898 676542 2345799999999999999999999999996
No 9
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.2e-53 Score=447.74 Aligned_cols=311 Identities=20% Similarity=0.380 Sum_probs=251.4
Q ss_pred eeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCccccC
Q 011556 123 TTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL-RFCYQQKEPIYDPSASRTYANVSCSSAICDS 201 (483)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~-~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~ 201 (483)
...|+. ++.+.+|+++|+||||||+|.|+|||||+++||+|..|. ..|..+ +.|||++|+||+.+.+...
T Consensus 109 ~~~~l~---n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~--~~yd~s~SSTy~~~~~~~~---- 179 (482)
T PTZ00165 109 LQQDLL---NFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPH--RKFDPKKSSTYTKLKLGDE---- 179 (482)
T ss_pred cceecc---cccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCccccccc--CCCCccccCCcEecCCCCc----
Confidence 445554 578899999999999999999999999999999999994 357654 8999999999998532110
Q ss_pred ccCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCC-Ccc--CcceEeecCCCCCc--
Q 011556 202 LESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRG-LYG--QAAGLLGLGQDSIS-- 276 (483)
Q Consensus 202 ~~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g-~~~--~~~GilGLg~~~~S-- 276 (483)
...+.++||+|+ ..|.+++|+|+|++ ..++++.|||++...+ .|. .+|||||||++.++
T Consensus 180 --------------~~~~~i~YGsGs-~~G~l~~DtV~ig~-l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~ 243 (482)
T PTZ00165 180 --------------SAETYIQYGTGE-CVLALGKDTVKIGG-LKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFK 243 (482)
T ss_pred --------------cceEEEEeCCCc-EEEEEEEEEEEECC-EEEccEEEEEEEeccccccccccccceeecCCCccccc
Confidence 124679999996 78999999999998 4899999999998765 343 68999999998753
Q ss_pred -------hhhhhccc---cCceEEEEcCCCCCCCceEEecCCCCCCC--CCCceeeeCccCCCCCccEEEEEeEEEECce
Q 011556 277 -------LVSQTSRK---YKKYFSYCLPSSSSSTGHLTFGKAAGNGP--SKTIKFTPLSTATADSSFYGLDIIGLSVGGK 344 (483)
Q Consensus 277 -------l~sQ~~~~---~~~~FS~cL~~~~~~~G~L~fGg~d~~~~--~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~ 344 (483)
++.|+..+ ..++||+||++..+..|+|+|||+|+.++ .+++.|+|+.. ..||.|.+++|+||++
T Consensus 244 s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~----~~yW~i~l~~i~vgg~ 319 (482)
T PTZ00165 244 ESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIS----TDYWEIEVVDILIDGK 319 (482)
T ss_pred ccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccc----cceEEEEeCeEEECCE
Confidence 23333322 16899999987655689999999998655 56899999987 6799999999999998
Q ss_pred ecccCCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcC--C-
Q 011556 345 KLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNR--G- 421 (483)
Q Consensus 345 ~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g--g- 421 (483)
.+...... ..+|+||||+++++|+++|++|.++++.. ..|.+ ...+|+|+|+|.| |
T Consensus 320 ~~~~~~~~---~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------------~~C~~-----~~~lP~itf~f~g~~g~ 378 (482)
T PTZ00165 320 SLGFCDRK---CKAAIDTGSSLITGPSSVINPLLEKIPLE-------------EDCSN-----KDSLPRISFVLEDVNGR 378 (482)
T ss_pred EeeecCCc---eEEEEcCCCccEeCCHHHHHHHHHHcCCc-------------ccccc-----cccCCceEEEECCCCCc
Confidence 77653222 45999999999999999999999988542 25753 4578999999942 2
Q ss_pred -cEEEEcCCceEEEc----CCCeEEE-EEEeCCC---CCCceEecHhhhcceEEEEECCCCEEEEeeCCCC
Q 011556 422 -VEVSIEGSAILIGS----SPKQICL-AFAGNSD---DSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGCS 483 (483)
Q Consensus 422 -~~~~l~~~~~~~~~----~~~~~Cl-~~~~~~~---~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 483 (483)
+++.|++++|+++. ..+..|+ +|.+.+. .++.||||++|||++|+|||.+++|||||+++|+
T Consensus 379 ~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~ 449 (482)
T PTZ00165 379 KIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHD 449 (482)
T ss_pred eEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccC
Confidence 38999999999874 2456897 7876531 2467999999999999999999999999999984
No 10
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.8e-53 Score=428.90 Aligned_cols=299 Identities=25% Similarity=0.466 Sum_probs=249.1
Q ss_pred cceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCC
Q 011556 135 TGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL-RFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCA 213 (483)
Q Consensus 135 ~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~-~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~ 213 (483)
+..|+++|.||||+|++.|+|||||+++||+|..|. ..|..+ +.|||++|+||+...
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~--~~f~~~~SsT~~~~~-------------------- 58 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNH--TKFNPSQSSTYSTNG-------------------- 58 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCcccccc--CCCCcccCCCceECC--------------------
Confidence 368999999999999999999999999999999994 357654 799999999998753
Q ss_pred CCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCC-c--cCcceEeecCCCC------Cchhhhhccc
Q 011556 214 GSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGL-Y--GQAAGLLGLGQDS------ISLVSQTSRK 284 (483)
Q Consensus 214 ~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~-~--~~~~GilGLg~~~------~Sl~sQ~~~~ 284 (483)
|.|.+.|++|+ +.|.+++|+|+|++. .++++.|||++...+. + ...+||||||++. .+++.|+...
T Consensus 59 ---~~~~~~Yg~Gs-~~G~~~~D~i~~g~~-~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~ 133 (318)
T cd05477 59 ---ETFSLQYGSGS-LTGIFGYDTVTVQGI-IITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQ 133 (318)
T ss_pred ---cEEEEEECCcE-EEEEEEeeEEEECCE-EEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhc
Confidence 69999999996 799999999999985 8999999999987652 2 3679999999864 3456666543
Q ss_pred ---cCceEEEEcCCCC-CCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEEE
Q 011556 285 ---YKKYFSYCLPSSS-SSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAII 360 (483)
Q Consensus 285 ---~~~~FS~cL~~~~-~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~ii 360 (483)
..++||+||.+.. ...|.|+|||+|++++.+++.|+|+.. ..+|.|++++|+|+++++.+.... ..+||
T Consensus 134 g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~~~---~~~ii 206 (318)
T cd05477 134 NLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTS----ETYWQIGIQGFQINGQATGWCSQG---CQAIV 206 (318)
T ss_pred CCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCC----ceEEEEEeeEEEECCEEecccCCC---ceeeE
Confidence 2689999998753 246999999999999999999999976 679999999999999987543322 45999
Q ss_pred cccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEEcCCCeE
Q 011556 361 DSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQI 440 (483)
Q Consensus 361 DSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~ 440 (483)
||||++++||+++|++|++++++.... . .+|.++|.....+|.|+|+| +|+++.|++++|++.. ...
T Consensus 207 DSGtt~~~lP~~~~~~l~~~~~~~~~~----~------~~~~~~C~~~~~~p~l~~~f-~g~~~~v~~~~y~~~~--~~~ 273 (318)
T cd05477 207 DTGTSLLTAPQQVMSTLMQSIGAQQDQ----Y------GQYVVNCNNIQNLPTLTFTI-NGVSFPLPPSAYILQN--NGY 273 (318)
T ss_pred CCCCccEECCHHHHHHHHHHhCCcccc----C------CCEEEeCCccccCCcEEEEE-CCEEEEECHHHeEecC--CCe
Confidence 999999999999999999999764211 1 24555666666799999999 6899999999999875 567
Q ss_pred EE-EEEeCC----CCCCceEecHhhhcceEEEEECCCCEEEEeeC
Q 011556 441 CL-AFAGNS----DDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPK 480 (483)
Q Consensus 441 Cl-~~~~~~----~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 480 (483)
|+ +|.+.. .....||||+.|||++|++||++++|||||++
T Consensus 274 C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 274 CTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred EEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 97 776531 12357999999999999999999999999985
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=2.5e-53 Score=428.15 Aligned_cols=298 Identities=27% Similarity=0.471 Sum_probs=247.7
Q ss_pred ccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCC
Q 011556 132 VVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL-RFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTP 210 (483)
Q Consensus 132 ~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~-~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~ 210 (483)
++.+.+|+++|.||||+|++.|+|||||+++||+|.+|. ..|..+ +.|+|++|+|++...
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~--~~y~~~~Sst~~~~~----------------- 65 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLH--SKYDSSASSTYKANG----------------- 65 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCc--ceECCCCCcceeeCC-----------------
Confidence 345789999999999999999999999999999999994 358755 799999999988643
Q ss_pred CCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCC-c--cCcceEeecCCCCCchhh--------
Q 011556 211 QCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGL-Y--GQAAGLLGLGQDSISLVS-------- 279 (483)
Q Consensus 211 ~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~-~--~~~~GilGLg~~~~Sl~s-------- 279 (483)
|.|.+.|++|+ +.|.+++|+|+|++. .++++.|||++...+. + ...+||||||++..+...
T Consensus 66 ------~~~~~~y~~g~-~~G~~~~D~v~ig~~-~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l 137 (320)
T cd05488 66 ------TEFKIQYGSGS-LEGFVSQDTLSIGDL-TIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNM 137 (320)
T ss_pred ------CEEEEEECCce-EEEEEEEeEEEECCE-EECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHH
Confidence 69999999997 799999999999884 8899999999877663 2 367999999998876432
Q ss_pred --hhccccCceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCc
Q 011556 280 --QTSRKYKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAG 357 (483)
Q Consensus 280 --Q~~~~~~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~ 357 (483)
|.... +++||+||.+.....|.|+|||+|++++.++++|+|+.. ..+|.|.+++|+||++.+.... ..
T Consensus 138 ~~qg~i~-~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~vg~~~~~~~~-----~~ 207 (320)
T cd05488 138 INQGLLD-EPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRR----KAYWEVELEKIGLGDEELELEN-----TG 207 (320)
T ss_pred HhcCCCC-CCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCc----CcEEEEEeCeEEECCEEeccCC-----Ce
Confidence 22222 689999999865568999999999988999999999986 5799999999999998876443 45
Q ss_pred EEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEEcCC
Q 011556 358 AIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSP 437 (483)
Q Consensus 358 ~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~ 437 (483)
++|||||++++||++++++|.+++++.. . ...+|.++|.....+|.|+|+| +|+++.|++++|+++.
T Consensus 208 ~ivDSGtt~~~lp~~~~~~l~~~~~~~~---~-------~~~~~~~~C~~~~~~P~i~f~f-~g~~~~i~~~~y~~~~-- 274 (320)
T cd05488 208 AAIDTGTSLIALPSDLAEMLNAEIGAKK---S-------WNGQYTVDCSKVDSLPDLTFNF-DGYNFTLGPFDYTLEV-- 274 (320)
T ss_pred EEEcCCcccccCCHHHHHHHHHHhCCcc---c-------cCCcEEeeccccccCCCEEEEE-CCEEEEECHHHheecC--
Confidence 9999999999999999999998886431 1 1234555565556799999999 6899999999999864
Q ss_pred CeEEE-EEEeCC---CCCCceEecHhhhcceEEEEECCCCEEEEee
Q 011556 438 KQICL-AFAGNS---DDSDVAIIGNVQQKTLEVVYDVAQRRVGFAP 479 (483)
Q Consensus 438 ~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 479 (483)
...|+ .+.... ...+.||||++|||++|+|||.+++|||||+
T Consensus 275 ~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 275 SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 45798 455432 1234799999999999999999999999986
No 12
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=3.5e-53 Score=428.14 Aligned_cols=300 Identities=24% Similarity=0.409 Sum_probs=247.7
Q ss_pred ccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccc---cccCCCCCCCCCCCCCccceecCCCccccCccCCCCC
Q 011556 132 VVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLR---FCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGM 208 (483)
Q Consensus 132 ~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~---~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~ 208 (483)
++.+..|+++|+||||+|+++|+|||||+++||+|..|.. .|..+ +.|||++|+||+...
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~--~~y~~~~SsT~~~~~--------------- 65 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTH--NLYDASDSSTYKENG--------------- 65 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhccc--CcCCCCCCeeeeECC---------------
Confidence 4567899999999999999999999999999999888843 47644 799999999998753
Q ss_pred CCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCC-Cc--cCcceEeecCCCCCc---------
Q 011556 209 TPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRG-LY--GQAAGLLGLGQDSIS--------- 276 (483)
Q Consensus 209 ~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g-~~--~~~~GilGLg~~~~S--------- 276 (483)
|.|.+.|++|+ +.|.+++|+|+|++. .+ ++.||++....+ .+ ...+||||||++..+
T Consensus 66 --------~~~~~~Yg~g~-~~G~~~~D~v~~g~~-~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 134 (326)
T cd05487 66 --------TEFTIHYASGT-VKGFLSQDIVTVGGI-PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFD 134 (326)
T ss_pred --------EEEEEEeCCce-EEEEEeeeEEEECCE-Ee-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHH
Confidence 69999999996 899999999999974 55 488999987643 22 368999999998655
Q ss_pred -hhhhhccccCceEEEEcCCCC--CCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCccc
Q 011556 277 -LVSQTSRKYKKYFSYCLPSSS--SSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVF 353 (483)
Q Consensus 277 -l~sQ~~~~~~~~FS~cL~~~~--~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f 353 (483)
|++|.... +++||+||.+.+ ...|+|+|||+|++++.++++|+|+.. ..+|.|.+++|+|+++.+.....
T Consensus 135 ~L~~qg~i~-~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~~~-- 207 (326)
T cd05487 135 NIMSQGVLK-EDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSK----TGFWQIQMKGVSVGSSTLLCEDG-- 207 (326)
T ss_pred HHHhcCCCC-CCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCc----CceEEEEecEEEECCEEEecCCC--
Confidence 45564443 789999998754 347999999999999999999999976 67999999999999998754432
Q ss_pred CCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEE
Q 011556 354 SSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILI 433 (483)
Q Consensus 354 ~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~ 433 (483)
..+||||||++++||++++++|++++++. +. . .+|.++|.....+|+|+|+| +|..++|++++|++
T Consensus 208 --~~aiiDSGts~~~lP~~~~~~l~~~~~~~---~~--~------~~y~~~C~~~~~~P~i~f~f-gg~~~~v~~~~yi~ 273 (326)
T cd05487 208 --CTAVVDTGASFISGPTSSISKLMEALGAK---ER--L------GDYVVKCNEVPTLPDISFHL-GGKEYTLSSSDYVL 273 (326)
T ss_pred --CEEEECCCccchhCcHHHHHHHHHHhCCc---cc--C------CCEEEeccccCCCCCEEEEE-CCEEEEeCHHHhEE
Confidence 45999999999999999999999998654 11 1 13444455556789999999 78999999999998
Q ss_pred EcCC--CeEEE-EEEeCC---CCCCceEecHhhhcceEEEEECCCCEEEEeeC
Q 011556 434 GSSP--KQICL-AFAGNS---DDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPK 480 (483)
Q Consensus 434 ~~~~--~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 480 (483)
+... ...|+ +|...+ ...+.||||++|||++|+|||++++|||||++
T Consensus 274 ~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 274 QDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred eccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 7532 56797 777542 22357999999999999999999999999985
No 13
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=7e-53 Score=424.28 Aligned_cols=290 Identities=27% Similarity=0.478 Sum_probs=239.4
Q ss_pred ccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc--ccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCC
Q 011556 132 VVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL--RFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMT 209 (483)
Q Consensus 132 ~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~--~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~ 209 (483)
++.+.+|+++|.||||+|++.|+|||||+++||+|..|. ..|..+ +.|||++|+||+...
T Consensus 5 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~--~~y~~~~SsT~~~~~---------------- 66 (317)
T cd06098 5 NYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFH--SKYKSSKSSTYKKNG---------------- 66 (317)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccccc--CcCCcccCCCcccCC----------------
Confidence 466889999999999999999999999999999999994 368755 799999999988753
Q ss_pred CCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCC-Cc--cCcceEeecCCCCCch---------
Q 011556 210 PQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRG-LY--GQAAGLLGLGQDSISL--------- 277 (483)
Q Consensus 210 ~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g-~~--~~~~GilGLg~~~~Sl--------- 277 (483)
+.+.+.|++|+ +.|.+++|+|+|++. .++++.|||++...+ .+ ...+||||||++..+.
T Consensus 67 -------~~~~i~Yg~G~-~~G~~~~D~v~ig~~-~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 137 (317)
T cd06098 67 -------TSASIQYGTGS-ISGFFSQDSVTVGDL-VVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYN 137 (317)
T ss_pred -------CEEEEEcCCce-EEEEEEeeEEEECCE-EECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHH
Confidence 47899999996 799999999999984 899999999997654 22 2689999999987653
Q ss_pred -hhhhccccCceEEEEcCCCC--CCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccC
Q 011556 278 -VSQTSRKYKKYFSYCLPSSS--SSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFS 354 (483)
Q Consensus 278 -~sQ~~~~~~~~FS~cL~~~~--~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~ 354 (483)
.+|.... .++||+||.+.. ...|+|+|||+|++++.++++|+|+.. ..+|.|.+++|+||++.+......
T Consensus 138 l~~qg~i~-~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~~~-- 210 (317)
T cd06098 138 MVEQGLVK-EPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTR----KGYWQFEMGDVLIGGKSTGFCAGG-- 210 (317)
T ss_pred HHhcCCCC-CCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCc----CcEEEEEeCeEEECCEEeeecCCC--
Confidence 2332222 689999998643 247999999999999999999999976 679999999999999987654332
Q ss_pred CCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEE
Q 011556 355 SAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIG 434 (483)
Q Consensus 355 ~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~ 434 (483)
..+||||||++++||++++++|. ...+|++ ...+|+|+|+| +|++++|++++|+++
T Consensus 211 -~~aivDTGTs~~~lP~~~~~~i~-----------------~~~~C~~-----~~~~P~i~f~f-~g~~~~l~~~~yi~~ 266 (317)
T cd06098 211 -CAAIADSGTSLLAGPTTIVTQIN-----------------SAVDCNS-----LSSMPNVSFTI-GGKTFELTPEQYILK 266 (317)
T ss_pred -cEEEEecCCcceeCCHHHHHhhh-----------------ccCCccc-----cccCCcEEEEE-CCEEEEEChHHeEEe
Confidence 35999999999999998876653 1225753 34689999999 789999999999987
Q ss_pred cC--CCeEEE-EEEeCC---CCCCceEecHhhhcceEEEEECCCCEEEEee
Q 011556 435 SS--PKQICL-AFAGNS---DDSDVAIIGNVQQKTLEVVYDVAQRRVGFAP 479 (483)
Q Consensus 435 ~~--~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 479 (483)
.. ....|+ +|...+ .....||||++|||++|+|||++++|||||+
T Consensus 267 ~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 267 VGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred ecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 53 245898 566432 2245799999999999999999999999995
No 14
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.9e-52 Score=423.12 Aligned_cols=301 Identities=25% Similarity=0.440 Sum_probs=248.0
Q ss_pred ccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccc---cccCCCCCCCCCCCCCccceecCCCccccCccCCCCC
Q 011556 132 VVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLR---FCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGM 208 (483)
Q Consensus 132 ~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~---~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~ 208 (483)
++.+.+|+++|.||||+|++.|++||||+++||+|..|.. .|.. .+.|||++|+|++...
T Consensus 6 n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~--~~~y~~~~Sst~~~~~--------------- 68 (329)
T cd05485 6 NYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLL--HNKYDSTKSSTYKKNG--------------- 68 (329)
T ss_pred eccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccC--CCeECCcCCCCeEECC---------------
Confidence 5677999999999999999999999999999999999942 4754 3789999999988754
Q ss_pred CCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCC-Cc--cCcceEeecCCCCCch------hh
Q 011556 209 TPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRG-LY--GQAAGLLGLGQDSISL------VS 279 (483)
Q Consensus 209 ~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g-~~--~~~~GilGLg~~~~Sl------~s 279 (483)
|.|.+.|++|+ +.|.+++|+++|++. .++++.|||+.+..+ .+ ...+||||||++..+. ..
T Consensus 69 --------~~~~i~Y~~g~-~~G~~~~D~v~ig~~-~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~ 138 (329)
T cd05485 69 --------TEFAIQYGSGS-LSGFLSTDTVSVGGV-SVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFY 138 (329)
T ss_pred --------eEEEEEECCce-EEEEEecCcEEECCE-EECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHH
Confidence 69999999997 899999999999984 889999999988765 23 2579999999987653 23
Q ss_pred hhccc---cCceEEEEcCCCCC--CCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccC
Q 011556 280 QTSRK---YKKYFSYCLPSSSS--STGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFS 354 (483)
Q Consensus 280 Q~~~~---~~~~FS~cL~~~~~--~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~ 354 (483)
|+..+ .++.||+||.+..+ ..|+|+|||+|++++.++++|+|+.. ..+|.|.+++|+|+++.+....
T Consensus 139 ~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~~~~i~v~~~~~~~~~---- 210 (329)
T cd05485 139 NMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTR----KGYWQFKMDSVSVGEGEFCSGG---- 210 (329)
T ss_pred HHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCC----ceEEEEEeeEEEECCeeecCCC----
Confidence 43322 26899999986543 47999999999988999999999976 6799999999999998764221
Q ss_pred CCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEE
Q 011556 355 SAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIG 434 (483)
Q Consensus 355 ~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~ 434 (483)
..+||||||++++||++++++|.+++++. ... ..||.++|.....+|+|+|+| ||+++.|++++|+++
T Consensus 211 -~~~iiDSGtt~~~lP~~~~~~l~~~~~~~----~~~------~~~~~~~C~~~~~~p~i~f~f-gg~~~~i~~~~yi~~ 278 (329)
T cd05485 211 -CQAIADTGTSLIAGPVDEIEKLNNAIGAK----PII------GGEYMVNCSAIPSLPDITFVL-GGKSFSLTGKDYVLK 278 (329)
T ss_pred -cEEEEccCCcceeCCHHHHHHHHHHhCCc----ccc------CCcEEEeccccccCCcEEEEE-CCEEeEEChHHeEEE
Confidence 35999999999999999999999988653 111 124555666666789999999 789999999999988
Q ss_pred cC--CCeEEE-EEEeCC---CCCCceEecHhhhcceEEEEECCCCEEEEee
Q 011556 435 SS--PKQICL-AFAGNS---DDSDVAIIGNVQQKTLEVVYDVAQRRVGFAP 479 (483)
Q Consensus 435 ~~--~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 479 (483)
.. ....|+ +|...+ ...+.||||+.|||++|+|||++++|||||+
T Consensus 279 ~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 279 VTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred ecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 53 346798 577532 2345799999999999999999999999984
No 15
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.3e-52 Score=430.26 Aligned_cols=312 Identities=24% Similarity=0.340 Sum_probs=242.0
Q ss_pred ceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCCCC
Q 011556 136 GDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAGS 215 (483)
Q Consensus 136 ~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~ 215 (483)
.+|+++|.||||+|++.|+|||||+++||+|.+| |. .++.|||++|+||+...
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~---~~--~~~~f~~~~SsT~~~~~---------------------- 54 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPH---PF--IHTYFHRELSSTYRDLG---------------------- 54 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCC---cc--ccccCCchhCcCcccCC----------------------
Confidence 3699999999999999999999999999999987 32 23789999999998875
Q ss_pred CceeeEEcCCCCeEEEEEEEEEEEecCCCc-cCceEEEEEEecCCCcc---CcceEeecCCCCC------------chhh
Q 011556 216 TCVYGIEYGDNSFSAGFFAKETLTLTSSDV-FPNFLFGCGQYNRGLYG---QAAGLLGLGQDSI------------SLVS 279 (483)
Q Consensus 216 ~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~-~~~~~FG~~~~~~g~~~---~~~GilGLg~~~~------------Sl~s 279 (483)
|.|++.|++|+ +.|.+++|+|+|++... .-.+.|++.....+.+. ..+||||||++.+ ++++
T Consensus 55 -~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~ 132 (364)
T cd05473 55 -KGVTVPYTQGS-WEGELGTDLVSIPKGPNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVK 132 (364)
T ss_pred -ceEEEEECcce-EEEEEEEEEEEECCCCccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHh
Confidence 69999999996 68999999999985311 11123556665554432 5799999999876 4556
Q ss_pred hhccccCceEEEEcCC---------CCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCC
Q 011556 280 QTSRKYKKYFSYCLPS---------SSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPI 350 (483)
Q Consensus 280 Q~~~~~~~~FS~cL~~---------~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~ 350 (483)
|... .++||+||.. .....|+|+|||+|++++.+++.|+|+.. ..+|.|.+++|+|+++.+..+.
T Consensus 133 q~~~--~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~----~~~~~v~l~~i~vg~~~~~~~~ 206 (364)
T cd05473 133 QTGI--PDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIRE----EWYYEVIILKLEVGGQSLNLDC 206 (364)
T ss_pred ccCC--ccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCc----ceeEEEEEEEEEECCEeccccc
Confidence 6553 5799998742 11237999999999999999999999986 5789999999999999987655
Q ss_pred cccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCC--CCCCccceecCCCcccccCeEEEEEcCC-----cE
Q 011556 351 SVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPA--LSILDTCYDFSNYTSISVPVISFFFNRG-----VE 423 (483)
Q Consensus 351 ~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~--~~~~~~C~~~~~~~~~~~P~i~~~f~gg-----~~ 423 (483)
..+....+||||||++++||+++|++|++++++++........ .....+|++........+|+|+|+|+|+ .+
T Consensus 207 ~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~ 286 (364)
T cd05473 207 KEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFR 286 (364)
T ss_pred ccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEE
Confidence 4433246999999999999999999999999987532111111 1123478764432224699999999652 47
Q ss_pred EEEcCCceEEEcC---CCeEEEEEEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCCCC
Q 011556 424 VSIEGSAILIGSS---PKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGCS 483 (483)
Q Consensus 424 ~~l~~~~~~~~~~---~~~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 483 (483)
+.|+|++|+.... ....|+++.... ..+.||||++|||++|+|||++++|||||+++|+
T Consensus 287 l~l~p~~Y~~~~~~~~~~~~C~~~~~~~-~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~ 348 (364)
T cd05473 287 ITILPQLYLRPVEDHGTQLDCYKFAISQ-STNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCA 348 (364)
T ss_pred EEECHHHhhhhhccCCCcceeeEEeeec-CCCceEEeeeeEcceEEEEECCCCEEeeEecccc
Confidence 8999999987642 246798654332 2346999999999999999999999999999995
No 16
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=2.1e-51 Score=427.65 Aligned_cols=306 Identities=22% Similarity=0.392 Sum_probs=246.3
Q ss_pred CceeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCccc
Q 011556 121 DATTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL-RFCYQQKEPIYDPSASRTYANVSCSSAIC 199 (483)
Q Consensus 121 ~~~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~-~~C~~~~~~~fdps~SsT~~~~~C~s~~C 199 (483)
....+|+. +..+.+|+++|+||||+|++.|+|||||+++||+|..|. ..|..+ +.|||++|+||+...
T Consensus 126 ~~~~v~L~---n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~--~~yd~s~SsT~~~~~------ 194 (453)
T PTZ00147 126 EFDNVELK---DLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETK--NLYDSSKSKTYEKDG------ 194 (453)
T ss_pred CCCeeecc---ccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCC--CccCCccCcceEECC------
Confidence 34567775 345789999999999999999999999999999999994 357654 799999999998764
Q ss_pred cCccCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCC---c--cCcceEeecCCCC
Q 011556 200 DSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGL---Y--GQAAGLLGLGQDS 274 (483)
Q Consensus 200 ~~~~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~---~--~~~~GilGLg~~~ 274 (483)
|.|.+.|++|+ +.|.+++|+|+|++. .++ +.|+|+.+..+. + ...|||||||++.
T Consensus 195 -----------------~~f~i~Yg~Gs-vsG~~~~DtVtiG~~-~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~ 254 (453)
T PTZ00147 195 -----------------TKVEMNYVSGT-VSGFFSKDLVTIGNL-SVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKD 254 (453)
T ss_pred -----------------CEEEEEeCCCC-EEEEEEEEEEEECCE-EEE-EEEEEEEeccCcccccccccccceecccCCc
Confidence 58999999996 899999999999984 777 679998876542 1 2689999999987
Q ss_pred Cch------h----hhhccccCceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECce
Q 011556 275 ISL------V----SQTSRKYKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGK 344 (483)
Q Consensus 275 ~Sl------~----sQ~~~~~~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~ 344 (483)
++. + .|.... .++||+||++.....|.|+|||+|++++.+++.|+|+.. +.+|.|.++ +.+|+.
T Consensus 255 ~S~~~~~p~~~~L~~qg~I~-~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~----~~~W~V~l~-~~vg~~ 328 (453)
T PTZ00147 255 LSIGSVDPYVVELKNQNKIE-QAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNH----DLYWQVDLD-VHFGNV 328 (453)
T ss_pred cccccCCCHHHHHHHcCCCC-ccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCC----CceEEEEEE-EEECCE
Confidence 653 2 233333 689999998765568999999999999999999999975 679999998 577765
Q ss_pred ecccCCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEE
Q 011556 345 KLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEV 424 (483)
Q Consensus 345 ~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~ 424 (483)
.. . ...+||||||+++++|+++++++.+++.+.. .+.. .....+|+. ..+|+++|+| +|.++
T Consensus 329 ~~--~-----~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--~~~~--~~y~~~C~~------~~lP~~~f~f-~g~~~ 390 (453)
T PTZ00147 329 SS--E-----KANVIVDSGTSVITVPTEFLNKFVESLDVFK--VPFL--PLYVTTCNN------TKLPTLEFRS-PNKVY 390 (453)
T ss_pred ec--C-----ceeEEECCCCchhcCCHHHHHHHHHHhCCee--cCCC--CeEEEeCCC------CCCCeEEEEE-CCEEE
Confidence 32 1 1459999999999999999999999986531 1111 113446742 4689999999 68999
Q ss_pred EEcCCceEEEc--CCCeEEE-EEEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCC
Q 011556 425 SIEGSAILIGS--SPKQICL-AFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKG 481 (483)
Q Consensus 425 ~l~~~~~~~~~--~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 481 (483)
+|+|++|+.+. .....|+ +|.+.+...+.||||++|||++|+|||++++|||||++.
T Consensus 391 ~L~p~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 391 TLEPEYYLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EECHHHheeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 99999999764 2345797 687764344589999999999999999999999999874
No 17
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=5.7e-51 Score=401.92 Aligned_cols=258 Identities=33% Similarity=0.608 Sum_probs=217.4
Q ss_pred ceEEEEEEeCCCCceEEEEEEcCCCceeEeCC-CccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCCC
Q 011556 136 GDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCE-PCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAG 214 (483)
Q Consensus 136 ~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~-~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~ 214 (483)
++|+++|+||||+|++.|+|||||+++||+|+ +|.. |
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~-c----------------------------------------- 38 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTG-C----------------------------------------- 38 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCC-C-----------------------------------------
Confidence 47999999999999999999999999999984 5632 4
Q ss_pred CCceeeEEcCCCCeEEEEEEEEEEEecCC---CccCceEEEEEEecCCCc----cCcceEeecCCCCCchhhhhccc--c
Q 011556 215 STCVYGIEYGDNSFSAGFFAKETLTLTSS---DVFPNFLFGCGQYNRGLY----GQAAGLLGLGQDSISLVSQTSRK--Y 285 (483)
Q Consensus 215 ~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~---~~~~~~~FG~~~~~~g~~----~~~~GilGLg~~~~Sl~sQ~~~~--~ 285 (483)
.|.|.+.|+||+.++|.+++|+|+|+.. ..++++.|||+..+.+.+ ...+||||||+++.++++|+..+ .
T Consensus 39 -~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i 117 (273)
T cd05475 39 -QCDYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGII 117 (273)
T ss_pred -cCccEeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCc
Confidence 1689999998888999999999999632 367899999998776532 26899999999999999998764 2
Q ss_pred CceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEEEcccCc
Q 011556 286 KKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTV 365 (483)
Q Consensus 286 ~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~ 365 (483)
+++||+||++. ..|.|+||+. .++.++++|+||..++. ..+|.|++.+|+||++.+... ..++||||||+
T Consensus 118 ~~~Fs~~l~~~--~~g~l~~G~~--~~~~g~i~ytpl~~~~~-~~~y~v~l~~i~vg~~~~~~~-----~~~~ivDTGTt 187 (273)
T cd05475 118 KNVIGHCLSSN--GGGFLFFGDD--LVPSSGVTWTPMRRESQ-KKHYSPGPASLLFNGQPTGGK-----GLEVVFDSGSS 187 (273)
T ss_pred CceEEEEccCC--CCeEEEECCC--CCCCCCeeecccccCCC-CCeEEEeEeEEEECCEECcCC-----CceEEEECCCc
Confidence 58999999863 3699999953 35778899999988542 579999999999999854321 15699999999
Q ss_pred cccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCC---cEEEEcCCceEEEcCCCeEEE
Q 011556 366 ITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRG---VEVSIEGSAILIGSSPKQICL 442 (483)
Q Consensus 366 ~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg---~~~~l~~~~~~~~~~~~~~Cl 442 (483)
+++||+++| +|+|+|+|.++ ++++|++++|+++...+..|+
T Consensus 188 ~t~lp~~~y------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl 231 (273)
T cd05475 188 YTYFNAQAY------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCL 231 (273)
T ss_pred eEEcCCccc------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCCCEEE
Confidence 999999876 68999999654 799999999998866677899
Q ss_pred EEEeCCC--CCCceEecHhhhcceEEEEECCCCEEEEeeCCC
Q 011556 443 AFAGNSD--DSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482 (483)
Q Consensus 443 ~~~~~~~--~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C 482 (483)
++..... ..+.||||+.|||++|+|||++++|||||+++|
T Consensus 232 ~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 232 GILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred EEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 8876532 235799999999999999999999999999999
No 18
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.2e-50 Score=421.16 Aligned_cols=307 Identities=23% Similarity=0.391 Sum_probs=244.9
Q ss_pred CceeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCccc
Q 011556 121 DATTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL-RFCYQQKEPIYDPSASRTYANVSCSSAIC 199 (483)
Q Consensus 121 ~~~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~-~~C~~~~~~~fdps~SsT~~~~~C~s~~C 199 (483)
....+|+. ++.+.+|+++|.||||+|++.|+|||||+++||+|..|. ..|..+ +.|||++|+|++...
T Consensus 125 ~~~~~~l~---d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~--~~yd~s~SsT~~~~~------ 193 (450)
T PTZ00013 125 ENDVIELD---DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIK--NLYDSSKSKSYEKDG------ 193 (450)
T ss_pred CCCceeee---ccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccC--CCccCccCcccccCC------
Confidence 34566765 345789999999999999999999999999999999994 358755 799999999998754
Q ss_pred cCccCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCC---Cc--cCcceEeecCCCC
Q 011556 200 DSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRG---LY--GQAAGLLGLGQDS 274 (483)
Q Consensus 200 ~~~~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g---~~--~~~~GilGLg~~~ 274 (483)
|.|.+.|++|+ +.|.+++|+|+|++. .++ +.|+++.+..+ .+ ...+||||||++.
T Consensus 194 -----------------~~~~i~YG~Gs-v~G~~~~Dtv~iG~~-~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~ 253 (450)
T PTZ00013 194 -----------------TKVDITYGSGT-VKGFFSKDLVTLGHL-SMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKD 253 (450)
T ss_pred -----------------cEEEEEECCce-EEEEEEEEEEEECCE-EEc-cEEEEEEeccccccceecccccceecccCCc
Confidence 69999999996 899999999999984 666 68888876542 12 2679999999987
Q ss_pred Cch------hhhhccc---cCceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECcee
Q 011556 275 ISL------VSQTSRK---YKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKK 345 (483)
Q Consensus 275 ~Sl------~sQ~~~~---~~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~ 345 (483)
++. +.|+..+ ..++||+||+..+...|.|+|||+|++++.+++.|+|+.. ..+|.|.++ +.+|...
T Consensus 254 ~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~----~~yW~I~l~-v~~G~~~ 328 (450)
T PTZ00013 254 LSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDLD-VHFGKQT 328 (450)
T ss_pred cccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCc----CceEEEEEE-EEECcee
Confidence 652 3344332 2689999998765568999999999999999999999975 679999998 6776543
Q ss_pred cccCCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEE
Q 011556 346 LPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVS 425 (483)
Q Consensus 346 l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~ 425 (483)
.. ...+||||||+++++|+++++++.++++... .+. . ..+..+|+ . ..+|+|+|+| +|.+++
T Consensus 329 ~~-------~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--~~~-~-~~y~~~C~-----~-~~lP~i~F~~-~g~~~~ 390 (450)
T PTZ00013 329 MQ-------KANVIVDSGTTTITAPSEFLNKFFANLNVIK--VPF-L-PFYVTTCD-----N-KEMPTLEFKS-ANNTYT 390 (450)
T ss_pred cc-------ccceEECCCCccccCCHHHHHHHHHHhCCee--cCC-C-CeEEeecC-----C-CCCCeEEEEE-CCEEEE
Confidence 21 1459999999999999999999998886431 111 1 11234564 2 4689999999 689999
Q ss_pred EcCCceEEEc--CCCeEEE-EEEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCC
Q 011556 426 IEGSAILIGS--SPKQICL-AFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKG 481 (483)
Q Consensus 426 l~~~~~~~~~--~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 481 (483)
|+|++|+.+. ..+..|+ ++.+.+...+.||||++|||++|+|||++++|||||+++
T Consensus 391 L~p~~Yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 391 LEPEYYMNPLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred ECHHHheehhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 9999998753 2346797 777654445689999999999999999999999999874
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=8.7e-51 Score=398.96 Aligned_cols=256 Identities=45% Similarity=0.825 Sum_probs=225.3
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCCCCC
Q 011556 137 DYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAGST 216 (483)
Q Consensus 137 ~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~ 216 (483)
+|+++|+||||+|++.|+|||||+++||+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------------- 30 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------------
Confidence 699999999999999999999999999986
Q ss_pred ceeeEEcCCCCeEEEEEEEEEEEecCCC-ccCceEEEEEEecCCC-ccCcceEeecCCCCCchhhhhccccCceEEEEcC
Q 011556 217 CVYGIEYGDNSFSAGFFAKETLTLTSSD-VFPNFLFGCGQYNRGL-YGQAAGLLGLGQDSISLVSQTSRKYKKYFSYCLP 294 (483)
Q Consensus 217 c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~-~~~~~~FG~~~~~~g~-~~~~~GilGLg~~~~Sl~sQ~~~~~~~~FS~cL~ 294 (483)
|.|.+.|+||+.++|.+++|+|+|++.. .++++.|||+.+..+. ....+||||||+...|+++|+.... ++||+||+
T Consensus 31 ~~~~~~Y~dg~~~~G~~~~D~v~~g~~~~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~-~~Fs~~l~ 109 (265)
T cd05476 31 CSYEYSYGDGSSTSGVLATETFTFGDSSVSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTG-NKFSYCLV 109 (265)
T ss_pred CceEeEeCCCceeeeeEEEEEEEecCCCCccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhccc-CeeEEEcc
Confidence 1678999999889999999999999843 7899999999988752 2378999999999999999998874 89999999
Q ss_pred CC--CCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCccc-----CCCcEEEcccCccc
Q 011556 295 SS--SSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVF-----SSAGAIIDSGTVIT 367 (483)
Q Consensus 295 ~~--~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f-----~~~~~iiDSGT~~t 367 (483)
+. ....|+|+||++|++ +.+++.|+|++.++....+|.|++++|+|+++.+.++++.+ ....+||||||+++
T Consensus 110 ~~~~~~~~G~l~fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~ 188 (265)
T cd05476 110 PHDDTGGSSPLILGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLT 188 (265)
T ss_pred CCCCCCCCCeEEECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcce
Confidence 75 345899999999987 88999999999865456799999999999999887543221 11569999999999
Q ss_pred cccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEEcCCCeEEEEEEeC
Q 011556 368 RLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAFAGN 447 (483)
Q Consensus 368 ~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl~~~~~ 447 (483)
+||+++| |+|+|+|.+|.++.+++++|+++...+..|+++...
T Consensus 189 ~lp~~~~-------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~~~~~C~~~~~~ 231 (265)
T cd05476 189 YLPDPAY-------------------------------------PDLTLHFDGGADLELPPENYFVDVGEGVVCLAILSS 231 (265)
T ss_pred EcCcccc-------------------------------------CCEEEEECCCCEEEeCcccEEEECCCCCEEEEEecC
Confidence 9999887 889999966899999999999987777899998876
Q ss_pred CCCCCceEecHhhhcceEEEEECCCCEEEEeeCCC
Q 011556 448 SDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGC 482 (483)
Q Consensus 448 ~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C 482 (483)
. ..+.+|||++|||++|++||.+++|||||+++|
T Consensus 232 ~-~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 232 S-SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred C-CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 3 456899999999999999999999999999999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.3e-48 Score=386.10 Aligned_cols=265 Identities=30% Similarity=0.439 Sum_probs=218.4
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCCCCCc
Q 011556 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAGSTC 217 (483)
Q Consensus 138 Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~c 217 (483)
|+++|+||||+|++.|+|||||+++||+|..|.. |..+..+.|||++|+|++..+ .|
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~-~~~~~~~~y~~~~Sst~~~~~----------------------~~ 57 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPA-AQQGGHKLYDPSKSSTAKLLP----------------------GA 57 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCc-hhhccCCcCCCccCccceecC----------------------Cc
Confidence 7899999999999999999999999999999954 665666789999999988753 26
Q ss_pred eeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCC-Cc--cCcceEeecCCCCCchh---------hhhccc-
Q 011556 218 VYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRG-LY--GQAAGLLGLGQDSISLV---------SQTSRK- 284 (483)
Q Consensus 218 ~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g-~~--~~~~GilGLg~~~~Sl~---------sQ~~~~- 284 (483)
.|.+.|++|+.+.|.+++|+|+|++. .++++.|||++...+ .+ ...+||||||++..+.. .++...
T Consensus 58 ~~~i~Y~~G~~~~G~~~~D~v~ig~~-~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~ 136 (278)
T cd06097 58 TWSISYGDGSSASGIVYTDTVSIGGV-EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSL 136 (278)
T ss_pred EEEEEeCCCCeEEEEEEEEEEEECCE-EECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhc
Confidence 99999999987899999999999985 899999999998765 22 37899999999876532 222221
Q ss_pred cCceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEEEcccC
Q 011556 285 YKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGT 364 (483)
Q Consensus 285 ~~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT 364 (483)
..++||+||.+ ...|+|+|||+|++++.++++|+|+..+ ..+|.|++++|+||++...... ...+||||||
T Consensus 137 ~~~~Fs~~l~~--~~~G~l~fGg~D~~~~~g~l~~~pi~~~---~~~w~v~l~~i~v~~~~~~~~~----~~~~iiDSGT 207 (278)
T cd06097 137 DAPLFTADLRK--AAPGFYTFGYIDESKYKGEISWTPVDNS---SGFWQFTSTSYTVGGDAPWSRS----GFSAIADTGT 207 (278)
T ss_pred cCceEEEEecC--CCCcEEEEeccChHHcCCceEEEEccCC---CcEEEEEEeeEEECCcceeecC----CceEEeecCC
Confidence 15799999986 3479999999999899999999999863 5789999999999998433221 1469999999
Q ss_pred ccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEEcCCCeEEEEE
Q 011556 365 VITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAF 444 (483)
Q Consensus 365 ~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl~~ 444 (483)
+++++|++++++|.+++.+.. +... ..+|.++|... +|+|+|+|
T Consensus 208 s~~~lP~~~~~~l~~~l~g~~--~~~~------~~~~~~~C~~~--~P~i~f~~-------------------------- 251 (278)
T cd06097 208 TLILLPDAIVEAYYSQVPGAY--YDSE------YGGWVFPCDTT--LPDLSFAV-------------------------- 251 (278)
T ss_pred chhcCCHHHHHHHHHhCcCCc--ccCC------CCEEEEECCCC--CCCEEEEE--------------------------
Confidence 999999999999999884321 2111 12455566543 89999999
Q ss_pred EeCCCCCCceEecHhhhcceEEEEECCCCEEEEee
Q 011556 445 AGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAP 479 (483)
Q Consensus 445 ~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 479 (483)
.||||++|||++|+|||++++|||||+
T Consensus 252 --------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 --------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred --------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 599999999999999999999999996
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=3.5e-47 Score=378.87 Aligned_cols=273 Identities=22% Similarity=0.396 Sum_probs=227.4
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCCCCC
Q 011556 137 DYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAGST 216 (483)
Q Consensus 137 ~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~ 216 (483)
.|+++|.||||+|++.|+|||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 59999999999999999999999999998
Q ss_pred ceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCCccCcceEeecCCCCC-----------chhhhhccc-
Q 011556 217 CVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLYGQAAGLLGLGQDSI-----------SLVSQTSRK- 284 (483)
Q Consensus 217 c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~~~~~~GilGLg~~~~-----------Sl~sQ~~~~- 284 (483)
.|.+.|++|+.+.|.+++|+|+|++. .++++.|||+++.. ..+||||||+... +++.|+..+
T Consensus 31 -~~~~~Y~~g~~~~G~~~~D~v~~g~~-~~~~~~fg~~~~~~----~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g 104 (295)
T cd05474 31 -DFSISYGDGTSASGTWGTDTVSIGGA-TVKNLQFAVANSTS----SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQG 104 (295)
T ss_pred -eeEEEeccCCcEEEEEEEEEEEECCe-EecceEEEEEecCC----CCcceeeECCCCCcccccCCCcCCCHHHHHHHCC
Confidence 14888999878999999999999985 88999999999843 5789999999886 577777654
Q ss_pred --cCceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCC--CCccEEEEEeEEEECceecccCCcccCCCcEEE
Q 011556 285 --YKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATA--DSSFYGLDIIGLSVGGKKLPIPISVFSSAGAII 360 (483)
Q Consensus 285 --~~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~--~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~ii 360 (483)
.+++||+||.+.+...|.|+|||+|+.++.++++|+|+..++. ...+|.|++++|+|+++.+..+... ....+||
T Consensus 105 ~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~-~~~~~ii 183 (295)
T cd05474 105 LIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLS-KNLPALL 183 (295)
T ss_pred cccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccC-CCccEEE
Confidence 2689999999865568999999999889999999999998542 2378999999999999987532211 1267999
Q ss_pred cccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEEcC----
Q 011556 361 DSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSS---- 436 (483)
Q Consensus 361 DSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~---- 436 (483)
||||++++||+++|++|.+++++.... .. .....+|+ .... |+|+|+| +|+++.|++++|+++..
T Consensus 184 DSGt~~~~lP~~~~~~l~~~~~~~~~~---~~-~~~~~~C~-----~~~~-p~i~f~f-~g~~~~i~~~~~~~~~~~~~~ 252 (295)
T cd05474 184 DSGTTLTYLPSDIVDAIAKQLGATYDS---DE-GLYVVDCD-----AKDD-GSLTFNF-GGATISVPLSDLVLPASTDDG 252 (295)
T ss_pred CCCCccEeCCHHHHHHHHHHhCCEEcC---CC-cEEEEeCC-----CCCC-CEEEEEE-CCeEEEEEHHHhEeccccCCC
Confidence 999999999999999999999876321 11 22334564 3344 9999999 67999999999998864
Q ss_pred CCeEEE-EEEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeC
Q 011556 437 PKQICL-AFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPK 480 (483)
Q Consensus 437 ~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 480 (483)
....|+ +|.+.+. +.||||++|||++|++||.+++|||||++
T Consensus 253 ~~~~C~~~i~~~~~--~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 253 GDGACYLGIQPSTS--DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred CCCCeEEEEEeCCC--CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 367785 8887632 68999999999999999999999999986
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2.5e-46 Score=375.76 Aligned_cols=299 Identities=29% Similarity=0.469 Sum_probs=247.3
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCCCCC
Q 011556 137 DYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAGST 216 (483)
Q Consensus 137 ~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~ 216 (483)
+|+++|.||||+|++.|++||||+.+||++..|...|.......|++.+|+|++...
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~----------------------- 57 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQG----------------------- 57 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEE-----------------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccce-----------------------
Confidence 699999999999999999999999999999998552122334899999999998875
Q ss_pred ceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCC---ccCcceEeecCCCC-------Cchhhhhcccc-
Q 011556 217 CVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGL---YGQAAGLLGLGQDS-------ISLVSQTSRKY- 285 (483)
Q Consensus 217 c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~---~~~~~GilGLg~~~-------~Sl~sQ~~~~~- 285 (483)
+.+.+.|++|+ ++|.+++|+|+|++. .++++.||++....+. ....+||||||+.. .+++.|+..+.
T Consensus 58 ~~~~~~y~~g~-~~G~~~~D~v~ig~~-~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~ 135 (317)
T PF00026_consen 58 KPFSISYGDGS-VSGNLVSDTVSIGGL-TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGL 135 (317)
T ss_dssp EEEEEEETTEE-EEEEEEEEEEEETTE-EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTS
T ss_pred eeeeeeccCcc-cccccccceEeeeec-cccccceeccccccccccccccccccccccCCcccccccCCcceecchhhcc
Confidence 58999999997 999999999999984 8889999999997552 34789999999753 34555655442
Q ss_pred --CceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEEEccc
Q 011556 286 --KKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSG 363 (483)
Q Consensus 286 --~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSG 363 (483)
.++||++|.+.....|.|+|||+|++++.++++|+|+.. ..+|.|.+++|.++++....... ..++||||
T Consensus 136 i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~----~~~w~v~~~~i~i~~~~~~~~~~----~~~~~Dtg 207 (317)
T PF00026_consen 136 ISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVS----SGYWSVPLDSISIGGESVFSSSG----QQAILDTG 207 (317)
T ss_dssp SSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSS----TTTTEEEEEEEEETTEEEEEEEE----EEEEEETT
T ss_pred ccccccceeeeecccccchheeeccccccccCceeccCccc----ccccccccccccccccccccccc----eeeecccc
Confidence 789999999876567999999999999999999999995 78999999999999993322221 24999999
Q ss_pred CccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEEcCC--CeEE
Q 011556 364 TVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSP--KQIC 441 (483)
Q Consensus 364 T~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~--~~~C 441 (483)
|++++||.+++++|++++...... ..|.++|.....+|.++|+| ++.+++|++++|+.+... ...|
T Consensus 208 t~~i~lp~~~~~~i~~~l~~~~~~-----------~~~~~~c~~~~~~p~l~f~~-~~~~~~i~~~~~~~~~~~~~~~~C 275 (317)
T PF00026_consen 208 TSYIYLPRSIFDAIIKALGGSYSD-----------GVYSVPCNSTDSLPDLTFTF-GGVTFTIPPSDYIFKIEDGNGGYC 275 (317)
T ss_dssp BSSEEEEHHHHHHHHHHHTTEEEC-----------SEEEEETTGGGGSEEEEEEE-TTEEEEEEHHHHEEEESSTTSSEE
T ss_pred cccccccchhhHHHHhhhcccccc-----------eeEEEecccccccceEEEee-CCEEEEecchHhccccccccccee
Confidence 999999999999999999876322 34666667667799999999 689999999999988643 3479
Q ss_pred E-EEEeC--CCCCCceEecHhhhcceEEEEECCCCEEEEeeC
Q 011556 442 L-AFAGN--SDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPK 480 (483)
Q Consensus 442 l-~~~~~--~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 480 (483)
+ +|.+. ......+|||.+|||++|++||.+++|||||+|
T Consensus 276 ~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 276 YLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred EeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 7 66662 235678999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=6.5e-45 Score=359.28 Aligned_cols=268 Identities=34% Similarity=0.608 Sum_probs=224.4
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCC--CCCCCCCccceecCCCccccCccCCCCCCCCCCCC
Q 011556 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPI--YDPSASRTYANVSCSSAICDSLESGTGMTPQCAGS 215 (483)
Q Consensus 138 Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~--fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~ 215 (483)
|+++|.||||+|++.|+|||||+++||+|..|.. |..+.... |++..|+++...
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~-~~~~~~~~~~~~~~~s~~~~~~----------------------- 56 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTS-CSCQKHPRFKYDSSKSSTYKDT----------------------- 56 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCc-cccccCCCCccCccCCceeecC-----------------------
Confidence 7899999999999999999999999999999954 54433333 677777665443
Q ss_pred CceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCC--ccCcceEeecCCCC------Cchhhhhcccc--
Q 011556 216 TCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGL--YGQAAGLLGLGQDS------ISLVSQTSRKY-- 285 (483)
Q Consensus 216 ~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~--~~~~~GilGLg~~~------~Sl~sQ~~~~~-- 285 (483)
.|.|.+.|++|+ +.|.+++|+|+|++. .++++.|||++...+. ....+||||||+.. .+++.|+....
T Consensus 57 ~~~~~~~Y~~g~-~~g~~~~D~v~~~~~-~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i 134 (283)
T cd05471 57 GCTFSITYGDGS-VTGGLGTDTVTIGGL-TIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLI 134 (283)
T ss_pred CCEEEEEECCCe-EEEEEEEeEEEECCE-EEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCC
Confidence 379999999985 899999999999985 7899999999998752 23789999999998 78888887753
Q ss_pred -CceEEEEcCCC--CCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEEEcc
Q 011556 286 -KKYFSYCLPSS--SSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDS 362 (483)
Q Consensus 286 -~~~FS~cL~~~--~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDS 362 (483)
+++||+||.+. ....|.|+|||+|++++.+++.|+|++.. ...+|.|.+++|.|+++....... ...++|||
T Consensus 135 ~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~~~~---~~~~iiDs 209 (283)
T cd05471 135 SSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN--GPGYWQVPLDGISVGGKSVISSSG---GGGAIVDS 209 (283)
T ss_pred CCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCC--CCCEEEEEeCeEEECCceeeecCC---CcEEEEec
Confidence 69999999985 34589999999998889999999999985 367899999999999974111111 15699999
Q ss_pred cCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEEcCCCeEEE
Q 011556 363 GTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQICL 442 (483)
Q Consensus 363 GT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl 442 (483)
||++++||+++|++|++++.+.+.. ...|+...+.....+|+|+|+|
T Consensus 210 Gt~~~~lp~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~p~i~f~f------------------------ 256 (283)
T cd05471 210 GTSLIYLPSSVYDAILKALGAAVSS---------SDGGYGVDCSPCDTLPDITFTF------------------------ 256 (283)
T ss_pred CCCCEeCCHHHHHHHHHHhCCcccc---------cCCcEEEeCcccCcCCCEEEEE------------------------
Confidence 9999999999999999999886432 2346666666678899999999
Q ss_pred EEEeCCCCCCceEecHhhhcceEEEEECCCCEEEEee
Q 011556 443 AFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAP 479 (483)
Q Consensus 443 ~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 479 (483)
.+|||++|||++|++||.++++||||+
T Consensus 257 ----------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ----------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ----------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 589999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=100.00 E-value=2.5e-33 Score=255.03 Aligned_cols=159 Identities=52% Similarity=0.890 Sum_probs=130.8
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCCCCCc
Q 011556 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAGSTC 217 (483)
Q Consensus 138 Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~c 217 (483)
|+++|+||||+|++.|+|||||+++|++| .++.|+|++|+||+.++|.++.|...... .....|.+..|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~-~~~~~~~~~~C 69 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSF-CPCCCCSNNSC 69 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSS-BTCCTCESSEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccc-cccCCCCcCcc
Confidence 89999999999999999999999999998 23899999999999999999999987642 00122335789
Q ss_pred eeeEEcCCCCeEEEEEEEEEEEecCC----CccCceEEEEEEecCCCccCcceEeecCCCCCchhhhhccccCceEEEEc
Q 011556 218 VYGIEYGDNSFSAGFFAKETLTLTSS----DVFPNFLFGCGQYNRGLYGQAAGLLGLGQDSISLVSQTSRKYKKYFSYCL 293 (483)
Q Consensus 218 ~y~i~Ygdgs~~~G~~~~Dtl~l~~~----~~~~~~~FG~~~~~~g~~~~~~GilGLg~~~~Sl~sQ~~~~~~~~FS~cL 293 (483)
.|.+.|++++.+.|.+++|+|+++.. ..++++.|||++...+.+...+||||||++++||++|++....++|||||
T Consensus 70 ~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyCL 149 (164)
T PF14543_consen 70 PYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLFYGADGILGLGRGPLSLPSQLASSSGNKFSYCL 149 (164)
T ss_dssp EEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHHHHHH--SEEEEEB
T ss_pred cceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCCcCCCcccccCCCcccHHHHHHHhcCCeEEEEC
Confidence 99999999999999999999999874 35889999999999998889999999999999999999777789999999
Q ss_pred CC-CCCCCceEEecC
Q 011556 294 PS-SSSSTGHLTFGK 307 (483)
Q Consensus 294 ~~-~~~~~G~L~fGg 307 (483)
++ .....|+|+||+
T Consensus 150 ~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 150 PSSSPSSSGFLSFGD 164 (164)
T ss_dssp -S-SSSSEEEEEECS
T ss_pred CCCCCCCCEEEEeCc
Confidence 99 445689999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.95 E-value=5.7e-28 Score=219.40 Aligned_cols=149 Identities=43% Similarity=0.777 Sum_probs=122.1
Q ss_pred cEEEEEeEEEECceecccCCccc----CCCcEEEcccCccccccHHHHHHHHHHHHHhhccCC--C-CCCCCCCccceec
Q 011556 331 FYGLDIIGLSVGGKKLPIPISVF----SSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYP--T-APALSILDTCYDF 403 (483)
Q Consensus 331 ~y~v~l~gisVgg~~l~~~~~~f----~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~--~-~~~~~~~~~C~~~ 403 (483)
+|+|+|++|+||+++++++++.| ..+++||||||++|+||+++|++|+++|.+.+.... . ......++.||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 69999999999999999999887 348999999999999999999999999999988653 1 3445678899999
Q ss_pred CC----CcccccCeEEEEEcCCcEEEEcCCceEEEcCCCeEEEEEEeC-CCCCCceEecHhhhcceEEEEECCCCEEEEe
Q 011556 404 SN----YTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAFAGN-SDDSDVAIIGNVQQKTLEVVYDVAQRRVGFA 478 (483)
Q Consensus 404 ~~----~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl~~~~~-~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa 478 (483)
+. .....+|+|+|||.||++++|++++|++....+..|++|.+. .+..+..|||+.+|++++++||++++||||+
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~igF~ 160 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIGFA 160 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEEEe
Confidence 87 356789999999998999999999999998888999999987 3456789999999999999999999999999
Q ss_pred e
Q 011556 479 P 479 (483)
Q Consensus 479 ~ 479 (483)
|
T Consensus 161 ~ 161 (161)
T PF14541_consen 161 P 161 (161)
T ss_dssp E
T ss_pred C
Confidence 7
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.89 E-value=7.3e-23 Score=173.34 Aligned_cols=105 Identities=32% Similarity=0.624 Sum_probs=91.2
Q ss_pred EEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCC-CCCCCCccceecCCCccccCccCCCCCCCCCCCCCce
Q 011556 140 VTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIY-DPSASRTYANVSCSSAICDSLESGTGMTPQCAGSTCV 218 (483)
Q Consensus 140 ~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~f-dps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~c~ 218 (483)
++|.||||+|++.|+|||||+++||+|.+|.. |..+..+.| +|++|++++... |.
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~-~~~~~~~~~~~~~~sst~~~~~-----------------------~~ 56 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQS-LAIYSHSSYDDPSASSTYSDNG-----------------------CT 56 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCC-cccccccccCCcCCCCCCCCCC-----------------------cE
Confidence 47999999999999999999999999999954 655555667 999999988754 69
Q ss_pred eeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCCc---cCcceEeec
Q 011556 219 YGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLY---GQAAGLLGL 270 (483)
Q Consensus 219 y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~~---~~~~GilGL 270 (483)
|.+.|++|+ +.|.+++|+|+|++. .++++.|||++...+.+ ...+|||||
T Consensus 57 ~~~~Y~~g~-~~g~~~~D~v~ig~~-~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 57 FSITYGTGS-LSGGLSTDTVSIGDI-EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEEEeCCCe-EEEEEEEEEEEECCE-EECCEEEEEEEecCCccccccccccccCC
Confidence 999999996 789999999999985 79999999999997743 478999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.75 E-value=0.00012 Score=59.62 Aligned_cols=93 Identities=19% Similarity=0.193 Sum_probs=66.2
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCCCCC
Q 011556 137 DYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAGST 216 (483)
Q Consensus 137 ~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~ 216 (483)
.|++++.|+ ++++.+++|||++.+|+....... +. . + ... .
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~-l~-----~--~-----~~~------------------------~ 42 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAER-LG-----L--P-----LTL------------------------G 42 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHH-cC-----C--C-----ccC------------------------C
Confidence 589999999 799999999999999997642211 21 0 0 000 0
Q ss_pred ceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCCccCcceEeecCC
Q 011556 217 CVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLYGQAAGLLGLGQ 272 (483)
Q Consensus 217 c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~~~~~~GilGLg~ 272 (483)
....+...+|.........+.+++++. .++++.+........ ..+||||+..
T Consensus 43 ~~~~~~~~~G~~~~~~~~~~~i~ig~~-~~~~~~~~v~d~~~~---~~~gIlG~d~ 94 (96)
T cd05483 43 GKVTVQTANGRVRAARVRLDSLQIGGI-TLRNVPAVVLPGDAL---GVDGLLGMDF 94 (96)
T ss_pred CcEEEEecCCCccceEEEcceEEECCc-EEeccEEEEeCCccc---CCceEeChHH
Confidence 145667777766666666889999985 788888877765542 5899999853
No 28
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.63 E-value=0.087 Score=41.87 Aligned_cols=89 Identities=16% Similarity=0.192 Sum_probs=53.2
Q ss_pred EEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCCCCCcee
Q 011556 140 VTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAGSTCVY 219 (483)
Q Consensus 140 ~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~c~y 219 (483)
+++.|+ .+++.+++|||++.+.+.-.-+.. . ...+.... ...
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~-l------~~~~~~~~-----------------------------~~~ 42 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKK-L------GLKPRPKS-----------------------------VPI 42 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHH-c------CCCCcCCc-----------------------------eeE
Confidence 356677 689999999999988776443211 1 01111100 012
Q ss_pred eEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCCccCcceEeecC
Q 011556 220 GIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLYGQAAGLLGLG 271 (483)
Q Consensus 220 ~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~~~~~~GilGLg 271 (483)
.+.-.+|........-+.+++++. .+.++.|-.... -...+||||+-
T Consensus 43 ~~~~~~g~~~~~~~~~~~i~ig~~-~~~~~~~~v~~~----~~~~~~iLG~d 89 (90)
T PF13650_consen 43 SVSGAGGSVTVYRGRVDSITIGGI-TLKNVPFLVVDL----GDPIDGILGMD 89 (90)
T ss_pred EEEeCCCCEEEEEEEEEEEEECCE-EEEeEEEEEECC----CCCCEEEeCCc
Confidence 333334444445566678999884 777787766661 22578999974
No 29
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.46 E-value=0.1 Score=44.86 Aligned_cols=96 Identities=14% Similarity=0.151 Sum_probs=61.7
Q ss_pred CcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCC
Q 011556 134 ATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCA 213 (483)
Q Consensus 134 ~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~ 213 (483)
.++.|++++.|. ++++.+++|||++.+-+...--.. . ..++..- .
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~-L------gl~~~~~-~------------------------- 52 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQR-L------GLDLNRL-G------------------------- 52 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHH-c------CCCcccC-C-------------------------
Confidence 368999999998 789999999999998775432111 1 1111110 0
Q ss_pred CCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCCccCcceEeecCC
Q 011556 214 GSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLYGQAAGLLGLGQ 272 (483)
Q Consensus 214 ~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~~~~~~GilGLg~ 272 (483)
-...+.=..|......+.-|.+++++. .++|+.+.+..... ..+|+||+.+
T Consensus 53 ---~~~~~~ta~G~~~~~~~~l~~l~iG~~-~~~nv~~~v~~~~~----~~~~LLGm~f 103 (121)
T TIGR02281 53 ---YTVTVSTANGQIKAARVTLDRVAIGGI-VVNDVDAMVAEGGA----LSESLLGMSF 103 (121)
T ss_pred ---ceEEEEeCCCcEEEEEEEeCEEEECCE-EEeCcEEEEeCCCc----CCceEcCHHH
Confidence 022333344543445567899999995 88999987765332 1379999864
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.36 E-value=0.14 Score=44.11 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=57.5
Q ss_pred EEECceecccCCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCC-CCCCCCCCccceecCCCcccccCeEEEE
Q 011556 339 LSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYP-TAPALSILDTCYDFSNYTSISVPVISFF 417 (483)
Q Consensus 339 isVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~-~~~~~~~~~~C~~~~~~~~~~~P~i~~~ 417 (483)
+.|+|+.+. ++||||.+.+.++++..+++--..... ..+. ...+.... .+ ........+.
T Consensus 21 ~~Ing~~~~----------~LvDTGAs~s~Is~~~a~~lgl~~~~~-~~~~~~~~g~g~~-~~-------~g~~~~~~l~ 81 (124)
T cd05479 21 VEINGVPVK----------AFVDSGAQMTIMSKACAEKCGLMRLID-KRFQGIAKGVGTQ-KI-------LGRIHLAQVK 81 (124)
T ss_pred EEECCEEEE----------EEEeCCCceEEeCHHHHHHcCCccccC-cceEEEEecCCCc-EE-------EeEEEEEEEE
Confidence 667877643 899999999999999877643211100 0000 00000000 01 0112334455
Q ss_pred EcCCcEEEEcCCceEEEcCCCeEEEEEEeCCCCCCceEecHhhhcceEEEEECCCCEEEE
Q 011556 418 FNRGVEVSIEGSAILIGSSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGF 477 (483)
Q Consensus 418 f~gg~~~~l~~~~~~~~~~~~~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGF 477 (483)
+ +|..+.+ + +.+.+. .....|||..||+.+-.+.|+.+++|-|
T Consensus 82 i-~~~~~~~---~-----------~~Vl~~--~~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 82 I-GNLFLPC---S-----------FTVLED--DDVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred E-CCEEeee---E-----------EEEECC--CCcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 5 3433221 1 122322 2345799999999999999999998753
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=91.78 E-value=1.4 Score=37.91 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=56.3
Q ss_pred cceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCCC
Q 011556 135 TGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAG 214 (483)
Q Consensus 135 ~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~ 214 (483)
...+++++.|+ ++++.+++|||++.+++.-.-+.+ +.-+ +....
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~~-lgl~------~~~~~--------------------------- 57 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAEK-CGLM------RLIDK--------------------------- 57 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHHH-cCCc------cccCc---------------------------
Confidence 45688999999 899999999999999886542211 2111 00000
Q ss_pred CCceee-EEcC-CCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCCccCcceEeecCC
Q 011556 215 STCVYG-IEYG-DNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLYGQAAGLLGLGQ 272 (483)
Q Consensus 215 ~~c~y~-i~Yg-dgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~~~~~~GilGLg~ 272 (483)
.+. ...+ ++....|....+.+.+++. .++ ..|.+.... ..|+|||+-+
T Consensus 58 ---~~~~~~~g~g~~~~~g~~~~~~l~i~~~-~~~-~~~~Vl~~~-----~~d~ILG~d~ 107 (124)
T cd05479 58 ---RFQGIAKGVGTQKILGRIHLAQVKIGNL-FLP-CSFTVLEDD-----DVDFLIGLDM 107 (124)
T ss_pred ---ceEEEEecCCCcEEEeEEEEEEEEECCE-Eee-eEEEEECCC-----CcCEEecHHH
Confidence 111 1222 2234567777788999885 443 556544322 5789999753
No 32
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=91.43 E-value=1.4 Score=37.83 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=28.9
Q ss_pred CccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccHHHHHHH
Q 011556 329 SSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSAL 377 (483)
Q Consensus 329 ~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l 377 (483)
.++|.+. +.|+|+++. .+||||.+.+.++++..+++
T Consensus 9 ~g~~~v~---~~InG~~~~----------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNVR----------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEEE----------EEEECCCCcEEcCHHHHHHc
Confidence 5667666 678888542 99999999999999988765
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=90.24 E-value=0.32 Score=39.21 Aligned_cols=30 Identities=30% Similarity=0.313 Sum_probs=26.3
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCc
Q 011556 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPC 169 (483)
Q Consensus 138 Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C 169 (483)
|++++.|+ ++++.+++||||+.+++.-+.+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~~ 30 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKTW 30 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHHH
Confidence 57889999 8999999999999999986654
No 34
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=90.09 E-value=1.6 Score=36.43 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=20.9
Q ss_pred CceEecHhhhcceEEEEECCCCEE
Q 011556 452 DVAIIGNVQQKTLEVVYDVAQRRV 475 (483)
Q Consensus 452 ~~~IlG~~fl~~~~vvfD~~~~rI 475 (483)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 367999999999999999988753
No 35
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=89.29 E-value=0.96 Score=39.58 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=25.6
Q ss_pred ceEecHhhhcceEEEEECCCCEEEEeeC
Q 011556 453 VAIIGNVQQKTLEVVYDVAQRRVGFAPK 480 (483)
Q Consensus 453 ~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 480 (483)
..|||..+|+.+...-|..+++|-|...
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 4799999999999999999999999753
No 36
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=85.76 E-value=0.66 Score=37.94 Aligned_cols=26 Identities=35% Similarity=0.294 Sum_probs=17.0
Q ss_pred ChhhHHHHHHHHHHHHHHhhcccccc
Q 011556 1 MALLRILLFACVLSLRLLCSLEEGLA 26 (483)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (483)
|+|..+||+..||..+||++++.+++
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhH
Confidence 89888777776665666665554433
No 37
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=83.63 E-value=1.8 Score=33.24 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=29.5
Q ss_pred CcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCc
Q 011556 134 ATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPC 169 (483)
Q Consensus 134 ~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C 169 (483)
..+.+++.+.|| ++.+.+++|||++...+..+.+
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 357899999999 6999999999999998876654
No 38
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=80.74 E-value=2.4 Score=34.50 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=23.2
Q ss_pred EEEEEeCCCCceEEEEEEcCCCceeEeCCC
Q 011556 139 VVTVGIGTPKKDLSLVFDTGSDLTWTQCEP 168 (483)
Q Consensus 139 ~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~ 168 (483)
+++|.|. .+++.+++||||+.+-++.+.
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 3677777 789999999999999887653
No 39
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=79.91 E-value=2.5 Score=33.94 Aligned_cols=30 Identities=33% Similarity=0.502 Sum_probs=25.9
Q ss_pred EEEECceecccCCcccCCCcEEEcccCccccccHHHHHHH
Q 011556 338 GLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSAL 377 (483)
Q Consensus 338 gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l 377 (483)
.+.|+|+.+. ..||||.+.+.++++.+..+
T Consensus 4 ~~~Ing~~i~----------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK----------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE----------EEEcCCcceEEeCHHHHHHh
Confidence 3778888764 89999999999999998776
No 40
>PF13650 Asp_protease_2: Aspartyl protease
Probab=79.25 E-value=2.1 Score=33.72 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=24.3
Q ss_pred EEECceecccCCcccCCCcEEEcccCccccccHHHHHHH
Q 011556 339 LSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSAL 377 (483)
Q Consensus 339 isVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l 377 (483)
++|+|+++. ++||||.+.+.+.++.++++
T Consensus 3 v~vng~~~~----------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPVR----------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEEE----------EEEcCCCCcEEECHHHHHHc
Confidence 677887543 99999999999999988776
No 41
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=77.68 E-value=16 Score=34.14 Aligned_cols=86 Identities=12% Similarity=0.089 Sum_probs=57.6
Q ss_pred eeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCcc
Q 011556 124 TIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLE 203 (483)
Q Consensus 124 ~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~ 203 (483)
++-+.. ..+|.|.++..|- +|++..++|||-+.+-+.-+.-.+ --||.....
T Consensus 95 ~v~Lak---~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~R-------lGid~~~l~---------------- 146 (215)
T COG3577 95 EVSLAK---SRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDARR-------LGIDLNSLD---------------- 146 (215)
T ss_pred EEEEEe---cCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHHH-------hCCCccccC----------------
Confidence 444443 3579999999998 899999999999988776554322 234443221
Q ss_pred CCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEE
Q 011556 204 SGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLF 251 (483)
Q Consensus 204 ~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~F 251 (483)
-++.+.-.+|....-.+--|.|.||+. .++++.=
T Consensus 147 -------------y~~~v~TANG~~~AA~V~Ld~v~IG~I-~~~nV~A 180 (215)
T COG3577 147 -------------YTITVSTANGRARAAPVTLDRVQIGGI-RVKNVDA 180 (215)
T ss_pred -------------CceEEEccCCccccceEEeeeEEEccE-EEcCchh
Confidence 145555567764445566899999984 6665543
No 42
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=76.56 E-value=4.3 Score=32.23 Aligned_cols=29 Identities=17% Similarity=0.389 Sum_probs=23.9
Q ss_pred EEECceecccCCcccCCCcEEEcccCccccccHHHHHHH
Q 011556 339 LSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSAL 377 (483)
Q Consensus 339 isVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l 377 (483)
+.||++.+. ++||||++.+.++.+..+.+
T Consensus 7 v~i~~~~~~----------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQPVR----------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEEEE----------EEEECCCCcEEcCHHHHHHc
Confidence 678877643 99999999999999877665
No 43
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=74.73 E-value=7.4 Score=29.83 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=25.0
Q ss_pred EEECceecccCCcccCCCcEEEcccCccccccHHHHHHH
Q 011556 339 LSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSAL 377 (483)
Q Consensus 339 isVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l 377 (483)
+.|+|+.+. +++|||.+...++++..+.|
T Consensus 13 ~~I~g~~~~----------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK----------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE----------EEEeCCCcceecCHHHHHHh
Confidence 677887653 99999999999999998887
No 44
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=74.64 E-value=14 Score=33.25 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=32.9
Q ss_pred CCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccHHHHHHHH
Q 011556 315 KTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALR 378 (483)
Q Consensus 315 ~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~ 378 (483)
..+...|++.+-..+..=.+-...+.+.|..+. ++||||++...+-.+..+.|.
T Consensus 15 ~~~~~~PIV~~~~~Pevg~T~~v~l~~~~t~i~----------vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 15 SSITTCPIVHYIAIPEVGKTAIVQLNCKGTPIK----------VLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred ceeeeeeeEEEeeccccCcEEEEEEeecCcEEE----------EEEeCCCccceeehhhHHhhC
Confidence 455666776632122222223333556666543 999999999998888776663
No 45
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=67.64 E-value=6.8 Score=31.49 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.3
Q ss_pred EEEeCCCCceEEEEEEcCCCceeEeCC
Q 011556 141 TVGIGTPKKDLSLVFDTGSDLTWTQCE 167 (483)
Q Consensus 141 ~v~iGtP~q~~~vi~DTGS~~~Wv~~~ 167 (483)
++.|+ +|.+.+++|||.|++-+.-.
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45666 89999999999999999754
No 46
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=67.03 E-value=68 Score=32.82 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=31.7
Q ss_pred EcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEec-----------CCC------ccCcceEeecCCCC
Q 011556 222 EYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYN-----------RGL------YGQAAGLLGLGQDS 274 (483)
Q Consensus 222 ~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~-----------~g~------~~~~~GilGLg~~~ 274 (483)
.|++|. +=|-+.+-.|+|++. .-.++++-+..+. .+. ..+..||||+|.-+
T Consensus 83 ~F~sgy-tWGsVr~AdV~igge-~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~ 150 (370)
T PF11925_consen 83 QFASGY-TWGSVRTADVTIGGE-TASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFP 150 (370)
T ss_pred hccCcc-cccceEEEEEEEcCe-eccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCc
Confidence 456663 558889999999985 3344444443221 111 12689999998754
No 47
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=62.26 E-value=9.2 Score=30.34 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=21.5
Q ss_pred EEEeCCCCceEEEEEEcCCCceeEeCCCc
Q 011556 141 TVGIGTPKKDLSLVFDTGSDLTWTQCEPC 169 (483)
Q Consensus 141 ~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C 169 (483)
.+.|. ++++.+++|||++.+-+....+
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~a 28 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDLG 28 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHHh
Confidence 34555 7899999999999999976543
No 48
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=59.16 E-value=9.9 Score=30.15 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=24.4
Q ss_pred EEECceecccCCcccCCCcEEEcccCccccccHHHHHHH
Q 011556 339 LSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSAL 377 (483)
Q Consensus 339 isVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l 377 (483)
+.|||+.+. .++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~----------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV----------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE----------EEEECCCCeEEECHHHhhhc
Confidence 567787654 89999999999999988775
No 49
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=51.48 E-value=9.5 Score=30.88 Aligned_cols=27 Identities=22% Similarity=0.572 Sum_probs=21.2
Q ss_pred EEEECceecccCCcccCCCcEEEcccCccccccHHHH
Q 011556 338 GLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAY 374 (483)
Q Consensus 338 gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y 374 (483)
.|.++|+.+. ++||||...+.++++.+
T Consensus 9 ~v~i~g~~i~----------~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKIK----------ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEEE----------EEEETTBSSEEESSGGS
T ss_pred EEeECCEEEE----------EEEecCCCcceeccccc
Confidence 3667777653 99999999999997643
No 50
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=46.57 E-value=36 Score=31.90 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=29.7
Q ss_pred CccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccHHHHHHH
Q 011556 329 SSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSAL 377 (483)
Q Consensus 329 ~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l 377 (483)
+++|.++ ..|||+.+. .++|||.+.+.|+++..+.+
T Consensus 103 ~GHF~a~---~~VNGk~v~----------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD----------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEEE---EEECCEEEE----------EEEecCcceeecCHHHHHHh
Confidence 6677766 789999875 89999999999998876654
No 51
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=43.87 E-value=22 Score=28.80 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=18.9
Q ss_pred EEEcccCccccccHHHHHHHH
Q 011556 358 AIIDSGTVITRLPPAAYSALR 378 (483)
Q Consensus 358 ~iiDSGT~~t~Lp~~~y~~l~ 378 (483)
..+|||.+...+|...|+.+-
T Consensus 13 ~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 13 FQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEecCCEEEeccHHHHhhhc
Confidence 899999999999999887764
No 52
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=41.58 E-value=33 Score=30.92 Aligned_cols=29 Identities=17% Similarity=0.433 Sum_probs=23.6
Q ss_pred EEEEEeCCCCceEEEEEEcCCCceeEeCC
Q 011556 139 VVTVGIGTPKKDLSLVFDTGSDLTWTQCE 167 (483)
Q Consensus 139 ~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~ 167 (483)
...+.++.-..+++++|||||....+...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 45666666689999999999999888754
No 53
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=41.34 E-value=1.7e+02 Score=25.11 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=23.1
Q ss_pred EEEeCCCCCCceEecHhhhcceEEEEECCCCEE
Q 011556 443 AFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRV 475 (483)
Q Consensus 443 ~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rI 475 (483)
+++-.++.....+||-..|+..-.++|...+++
T Consensus 85 ~~Vl~s~~~~~~liG~~~lk~l~~~vn~~~g~L 117 (125)
T COG5550 85 AFVLASDNLPEPLIGVNLLKLLGLVVNPKTGKL 117 (125)
T ss_pred EEEEccCCCcccchhhhhhhhccEEEcCCcceE
Confidence 333333334445999999999999999876655
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=38.68 E-value=38 Score=29.17 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=23.6
Q ss_pred EEECceecccCCcccCCCcEEEcccCccccccHHHHHHH
Q 011556 339 LSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSAL 377 (483)
Q Consensus 339 isVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l 377 (483)
+++||+.+. +.||||+..+.++.+..+++
T Consensus 29 ~~ing~~vk----------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPVK----------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEEE----------EEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEEE----------EEEeCCCCccccCHHHHHHc
Confidence 788998864 99999999999999988874
No 55
>PF14979 TMEM52: Transmembrane 52
Probab=32.61 E-value=1.5e+02 Score=26.10 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=33.8
Q ss_pred eEEEecCCcCCC--CCCCCCcccCCCceEEEEEcC-CCCC--C-CCCC--CCCCCCCHHHHHHHhHHHHH
Q 011556 39 TRTIQPSSLLPS--SICDTSTKANERKATLKVVHK-HGPC--N-KLDG--GNAKFPSQAEILQQDQSRVN 100 (483)
Q Consensus 39 ~~~~~~~~~~~~--~~c~~~~~~~~~~~~~~l~hr-~~p~--s-p~~~--~~~~~~~~~~~~~~d~~R~~ 100 (483)
..||.+.+..+- ++-|-+.+--+-+.+++++-. +.+- + |.+. +....|+-+|+++....|..
T Consensus 66 ~TVia~D~DSt~hsTvTS~sSVq~P~~~ri~~~~~~~d~~~~~pPaysl~a~e~PP~YeEAlkM~k~r~~ 135 (154)
T PF14979_consen 66 VTVIAVDSDSTLHSTVTSYSSVQYPAGRRIPLVFHEHDPDSMSPPAYSLYALELPPSYEEALKMAKPRFE 135 (154)
T ss_pred EEEEeccCCccccchhhhhhcccccccccccceeccCCcccCCCCcccccCCCCCCCHHHHHhhcccccc
Confidence 467888887653 344444443344556665433 3221 1 2111 22356788999988777754
No 56
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=30.51 E-value=60 Score=22.95 Aligned_cols=17 Identities=29% Similarity=0.184 Sum_probs=11.1
Q ss_pred ChhhHHHHHHHHHHHHH
Q 011556 1 MALLRILLFACVLSLRL 17 (483)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (483)
||++.+++...++++.+
T Consensus 1 MmKk~i~~i~~~l~~~~ 17 (48)
T PRK10081 1 MVKKTIAAIFSVLVLST 17 (48)
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 88888877665555444
No 57
>COG5510 Predicted small secreted protein [Function unknown]
Probab=29.35 E-value=61 Score=22.32 Aligned_cols=19 Identities=42% Similarity=0.321 Sum_probs=13.4
Q ss_pred ChhhHHHHHHHHHHHHHHh
Q 011556 1 MALLRILLFACVLSLRLLC 19 (483)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (483)
||++-+++...+++.+.++
T Consensus 1 mmk~t~l~i~~vll~s~ll 19 (44)
T COG5510 1 MMKKTILLIALVLLASTLL 19 (44)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 7888777777666666554
No 58
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=29.06 E-value=90 Score=26.85 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=24.8
Q ss_pred ceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcccccc
Q 011556 136 GDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCY 174 (483)
Q Consensus 136 ~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~ 174 (483)
...|+++.|+ ++++++.+|||...+-+. ..|...|.
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims-~~~a~r~g 58 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMS-KSCAERCG 58 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEE-HHHHHHTT
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccC-HHHHHHcC
Confidence 4578999999 899999999999988775 34544463
No 59
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=23.86 E-value=2e+02 Score=26.98 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=19.9
Q ss_pred CCceEecHhhhcceEEEEECCCCEEEEee
Q 011556 451 SDVAIIGNVQQKTLEVVYDVAQRRVGFAP 479 (483)
Q Consensus 451 ~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 479 (483)
+-..|||+.|+|.|+=-...+ .+|-|..
T Consensus 90 g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 90 GIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 345899999999887665554 4676653
No 60
>PF04360 Serglycin: Serglycin ; InterPro: IPR007455 Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. Serglycin is a proteinase resistant secretory granule proteoglycan [].
Probab=21.40 E-value=58 Score=28.46 Aligned_cols=23 Identities=30% Similarity=0.886 Sum_probs=18.6
Q ss_pred ceeEeCCCc--cccccCCCCCCCCC
Q 011556 161 LTWTQCEPC--LRFCYQQKEPIYDP 183 (483)
Q Consensus 161 ~~Wv~~~~C--~~~C~~~~~~~fdp 183 (483)
.-||.|+|= ..+|..+++|.||-
T Consensus 33 YqWVrC~PDsnsANCieEKGP~FdL 57 (150)
T PF04360_consen 33 YQWVRCNPDSNSANCIEEKGPLFDL 57 (150)
T ss_pred eeEEecCCCCCCCccccccCCceec
Confidence 369999975 45699999999984
Done!