Query 011556
Match_columns 483
No_of_seqs 341 out of 1603
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 10:36:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011556.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011556hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vla_A EDGP; extracellular, in 100.0 6.4E-64 2.2E-68 519.8 29.1 345 120-480 6-398 (413)
2 3aup_A SBG7S, BG, basic 7S glo 100.0 4.7E-60 1.6E-64 490.3 29.2 341 122-483 9-395 (403)
3 3psg_A Pepsinogen; hydrolase(a 100.0 5.1E-58 1.7E-62 469.5 31.4 308 123-481 46-370 (370)
4 1tzs_A Cathepsin E; hydrolase, 100.0 5E-57 1.7E-61 459.3 30.2 311 123-483 13-344 (351)
5 2x0b_A Renin; hydrolase-hormon 100.0 1.8E-57 6.2E-62 466.8 26.8 307 123-481 51-383 (383)
6 1t6e_X Xylanase inhibitor; two 100.0 5.4E-57 1.9E-61 464.0 29.4 330 123-481 3-373 (381)
7 3cms_A Chymosin B; hydrolase, 100.0 3.1E-57 1.1E-61 455.7 26.6 306 123-481 4-323 (323)
8 1dpj_A Proteinase A; proteinas 100.0 1.1E-56 3.6E-61 453.0 29.7 307 123-481 3-329 (329)
9 1j71_A Candidapepsin, aspartic 100.0 6.6E-57 2.3E-61 455.4 27.5 302 123-483 3-326 (334)
10 1mpp_A Pepsin; hydrolase(acid 100.0 6.8E-57 2.3E-61 460.1 27.1 317 121-483 6-357 (361)
11 1am5_A Pepsin, acid proteinase 100.0 2.5E-56 8.7E-61 449.3 29.3 305 124-481 3-324 (324)
12 2qzx_A Candidapepsin-5; aspart 100.0 2.4E-56 8.3E-61 452.7 28.5 305 123-483 3-333 (342)
13 3c9x_A Trichoderma reesei aspa 100.0 1.5E-56 5.1E-61 451.9 26.7 302 133-480 12-329 (329)
14 1oew_A Endothiapepsin; hydrola 100.0 2.4E-56 8.2E-61 450.4 27.3 300 134-480 13-329 (329)
15 3fv3_A SAPP1P-secreted asparti 100.0 6.5E-56 2.2E-60 449.0 30.3 304 123-483 3-331 (339)
16 2apr_A Rhizopuspepsin; hydrola 100.0 3.7E-56 1.3E-60 448.3 28.1 300 132-481 11-324 (325)
17 1htr_B Gastricsin; aspartyl pr 100.0 5.2E-56 1.8E-60 447.9 26.6 307 124-481 4-329 (329)
18 4aa9_A Chymosin; hydrolase, as 100.0 3.1E-56 1.1E-60 447.8 24.7 300 132-481 7-320 (320)
19 3k1w_A Renin; protease, altern 100.0 5.5E-56 1.9E-60 449.8 25.8 310 121-481 6-340 (341)
20 1miq_A Plasmepsin; aspartic pr 100.0 9.8E-56 3.4E-60 453.3 26.9 304 123-481 52-374 (375)
21 2ewy_A Beta-secretase 2; BACE2 100.0 3E-55 1E-59 451.4 30.1 311 135-483 12-357 (383)
22 3pvk_A Candidapepsin-2; hydrol 100.0 3.5E-55 1.2E-59 444.1 27.8 305 123-483 3-333 (342)
23 2bju_A Plasmepsin II; aspartic 100.0 1.3E-55 4.4E-60 460.7 24.4 305 123-481 128-450 (453)
24 3lpj_A Beta-secretase 1; alzhe 100.0 6.6E-55 2.2E-59 458.5 28.3 313 135-483 73-422 (455)
25 2qp8_A Beta-secretase 1; BACE1 100.0 1E-54 3.5E-59 449.2 28.7 311 135-483 20-369 (395)
26 1qdm_A Prophytepsin; aspartic 100.0 1.5E-54 5.2E-59 456.7 30.0 320 123-481 42-478 (478)
27 3vf3_A Beta-secretase 1; struc 100.0 2.2E-54 7.6E-59 447.7 30.5 315 135-483 27-376 (402)
28 3qvc_A Histo-aspartic protease 100.0 1.5E-54 5E-59 453.2 26.7 305 122-481 126-449 (451)
29 1yg9_A Aspartic protease BLA G 100.0 1.8E-54 6.1E-59 436.9 25.3 307 123-481 7-329 (330)
30 1ibq_A Aspergillopepsin; aspar 100.0 9E-54 3.1E-58 430.9 27.8 298 134-481 12-325 (325)
31 1izd_A Aspartic proteinase; su 100.0 8.6E-54 3E-58 430.6 24.4 297 134-481 13-323 (323)
32 1bxo_A Protein (penicillopepsi 100.0 9.8E-54 3.4E-58 430.2 22.9 296 134-481 13-323 (323)
33 1wkr_A Polyporopepsin; hydrola 100.0 5.4E-53 1.8E-57 427.8 27.8 301 123-483 3-335 (340)
34 1b5f_A Protein (cardosin A); h 100.0 3.5E-43 1.2E-47 338.5 19.6 222 124-383 4-238 (239)
35 1lya_B Cathepsin D; lysosomal 100.0 1.7E-36 5.9E-41 291.9 20.4 219 244-481 3-241 (241)
36 1lya_A Cathepsin D; lysosomal 99.9 9.4E-23 3.2E-27 167.6 10.4 90 124-242 4-96 (97)
37 1b5f_B Protein (cardosin A); h 99.6 3.5E-16 1.2E-20 125.8 8.1 77 404-481 6-87 (87)
38 2i1a_A DNA damage-inducible pr 92.3 0.38 1.3E-05 41.2 7.7 108 330-478 25-134 (148)
39 3s8i_A Protein DDI1 homolog 1; 90.9 0.35 1.2E-05 41.8 5.8 109 331-479 24-134 (148)
40 1fmb_A EIAV protease; hydrolas 81.4 1.4 4.7E-05 35.6 4.0 26 139-166 10-35 (104)
41 2hs1_A HIV-1 protease; ultra-h 80.5 1.5 5E-05 35.1 3.8 29 139-169 10-38 (99)
42 3ec0_A Protease; HIV-2, inhibi 75.0 2.6 9E-05 33.6 3.8 28 139-168 10-37 (99)
43 3liy_A Protease; hydrolase, hy 71.9 3.3 0.00011 33.8 3.7 31 139-169 12-45 (116)
44 2i1a_A DNA damage-inducible pr 71.4 3.4 0.00012 35.0 4.0 31 134-166 23-53 (148)
45 2hah_A Protease, retropepsin; 69.7 3.9 0.00013 33.6 3.7 24 142-167 18-41 (116)
46 3sqf_A Protease; folded monome 63.9 6.6 0.00023 32.0 4.0 29 139-169 11-39 (114)
47 3s8i_A Protein DDI1 homolog 1; 58.4 7.9 0.00027 33.1 3.8 30 136-167 23-52 (148)
48 1lya_A Cathepsin D; lysosomal 49.6 14 0.00047 29.0 3.6 33 329-372 12-44 (97)
49 3slz_A GAG-Pro-POL polyprotein 48.2 15 0.00052 30.7 3.7 28 138-167 23-50 (132)
50 2rsp_A RSV protease; hydrolase 47.1 14 0.00049 30.5 3.4 24 144-169 27-50 (124)
51 3ka2_A [L-Ala51;Gly51']HIV-1 p 45.6 16 0.00056 32.9 3.7 26 139-166 10-35 (203)
52 1bxo_A Protein (penicillopepsi 40.0 21 0.00073 34.2 4.0 42 315-373 4-45 (323)
53 1ibq_A Aspergillopepsin; aspar 38.4 24 0.00082 33.9 4.1 41 317-374 5-45 (325)
54 1izd_A Aspartic proteinase; su 37.7 25 0.00084 33.8 4.0 43 315-374 4-46 (323)
55 1mpp_A Pepsin; hydrolase(acid 30.8 40 0.0014 32.7 4.3 46 314-372 4-49 (361)
56 1oew_A Endothiapepsin; hydrola 27.0 50 0.0017 31.6 4.2 33 329-372 14-46 (329)
57 3ka2_A [L-Ala51;Gly51']HIV-1 p 26.6 51 0.0017 29.6 3.8 27 139-167 114-140 (203)
58 3cms_A Chymosin B; hydrolase, 26.4 47 0.0016 31.7 3.9 43 317-372 3-45 (323)
59 3c9x_A Trichoderma reesei aspa 25.5 56 0.0019 31.3 4.2 34 329-373 14-47 (329)
60 2apr_A Rhizopuspepsin; hydrola 23.9 62 0.0021 30.9 4.2 33 329-372 14-46 (325)
61 3vla_A EDGP; extracellular, in 22.7 69 0.0024 31.9 4.4 45 315-371 6-50 (413)
62 1wkr_A Polyporopepsin; hydrola 22.3 62 0.0021 31.0 3.9 32 329-371 11-42 (340)
63 3aup_A SBG7S, BG, basic 7S glo 22.2 62 0.0021 32.0 3.9 42 319-372 11-52 (403)
64 1yg9_A Aspartic protease BLA G 21.7 49 0.0017 31.8 2.9 31 329-372 16-46 (330)
65 1b5f_A Protein (cardosin A); h 21.7 63 0.0021 29.4 3.6 33 329-372 12-44 (239)
66 1j71_A Candidapepsin, aspartic 21.6 61 0.0021 31.0 3.6 33 329-372 11-43 (334)
67 3fv3_A SAPP1P-secreted asparti 21.4 62 0.0021 31.0 3.6 39 320-372 5-43 (339)
68 4ank_A Transthyretin; hormone 21.4 53 0.0018 27.9 2.7 55 1-71 1-55 (147)
No 1
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=100.00 E-value=6.4e-64 Score=519.82 Aligned_cols=345 Identities=27% Similarity=0.441 Sum_probs=287.7
Q ss_pred CCceeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccc
Q 011556 120 TDATTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAIC 199 (483)
Q Consensus 120 ~~~~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C 199 (483)
.+...+|++.. ..+++|+++|+||||+|++.|+|||||+++||+|.+| .+|+||+.++|.++.|
T Consensus 6 ~~~~~~pv~~d--~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c--------------~~Sst~~~v~C~s~~C 69 (413)
T 3vla_A 6 PSALVVPVKKD--ASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN--------------YVSSTYRPVRCRTSQC 69 (413)
T ss_dssp CSEEEEEEEEC--TTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS--------------CCCTTCEECBTTSHHH
T ss_pred CccEEEEeeec--CCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC--------------CCCCCcCccCCCcccc
Confidence 35678899864 5689999999999999999999999999999999875 2799999999999999
Q ss_pred cCccCCCC------CCCCCCCCCceeeEEc-CCCCeEEEEEEEEEEEecC--------CCccCceEEEEEEec--CCCcc
Q 011556 200 DSLESGTG------MTPQCAGSTCVYGIEY-GDNSFSAGFFAKETLTLTS--------SDVFPNFLFGCGQYN--RGLYG 262 (483)
Q Consensus 200 ~~~~~~~~------~~~~C~~~~c~y~i~Y-gdgs~~~G~~~~Dtl~l~~--------~~~~~~~~FG~~~~~--~g~~~ 262 (483)
.....+.- ....|.++.|.|.+.| +||+.+.|++++|+|+|++ ...++++.|||++.+ .+.+.
T Consensus 70 ~~~~~~~~~~c~s~~~~~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~~ 149 (413)
T 3vla_A 70 SLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLAS 149 (413)
T ss_dssp HHTTCCEEECCSSCCBTTBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSCT
T ss_pred cccccCCCcccccCCCCCCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCccc
Confidence 87654310 0135666789999999 5888899999999999973 136889999999986 45666
Q ss_pred CcceEeecCCCCCchhhhhcccc--CceEEEEcCCCCCCCceEEecCCCCCC-----CCCC-ceeeeCccCCCC------
Q 011556 263 QAAGLLGLGQDSISLVSQTSRKY--KKYFSYCLPSSSSSTGHLTFGKAAGNG-----PSKT-IKFTPLSTATAD------ 328 (483)
Q Consensus 263 ~~~GilGLg~~~~Sl~sQ~~~~~--~~~FS~cL~~~~~~~G~L~fGg~d~~~-----~~~~-~~~tpl~~~~~~------ 328 (483)
..+||||||++++|+++|+..+. +++|||||++.....|+|+||+.|... +.++ ++||||+.++..
T Consensus 150 ~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~ 229 (413)
T 3vla_A 150 GVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATST 229 (413)
T ss_dssp TCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCC
T ss_pred ccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCcccccccc
Confidence 89999999999999999998753 589999999865568999999987532 5677 999999986532
Q ss_pred ----CccEEEEEeEEEECceecccCCcccC-----CCcEEEcccCccccccHHHHHHHHHHHHHhhc--cCCCCCCCCCC
Q 011556 329 ----SSFYGLDIIGLSVGGKKLPIPISVFS-----SAGAIIDSGTVITRLPPAAYSALRSTFKKFMS--KYPTAPALSIL 397 (483)
Q Consensus 329 ----~~~y~v~l~gisVgg~~l~~~~~~f~-----~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~--~~~~~~~~~~~ 397 (483)
..+|.|+|++|+||++.+.++++.|. .+++||||||++|+||+++|++|+++|.+.+. .++...+...+
T Consensus 230 ~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~ 309 (413)
T 3vla_A 230 QGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPF 309 (413)
T ss_dssp TTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTTC
T ss_pred ccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCCC
Confidence 27999999999999999998876663 26899999999999999999999999999875 34433334557
Q ss_pred ccceecCCCcc----cccCeEEEEEcC-CcEEEEcCCceEEEcCCCeEEEEEEeCCCC-CCceEecHhhhcceEEEEECC
Q 011556 398 DTCYDFSNYTS----ISVPVISFFFNR-GVEVSIEGSAILIGSSPKQICLAFAGNSDD-SDVAIIGNVQQKTLEVVYDVA 471 (483)
Q Consensus 398 ~~C~~~~~~~~----~~~P~i~~~f~g-g~~~~l~~~~~~~~~~~~~~Cl~~~~~~~~-~~~~IlG~~fl~~~~vvfD~~ 471 (483)
+.||+.++... ..+|+|+|+|.| +++++|++++|+++...+..|++|...+.. .+.||||++|||++|+|||++
T Consensus 310 ~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvfD~~ 389 (413)
T 3vla_A 310 GACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLA 389 (413)
T ss_dssp SCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESSCSSSEEECHHHHTTEEEEEETT
T ss_pred cceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCCcccceeEehhhhcCeEEEEECC
Confidence 89999875532 479999999965 489999999999987667889998876432 368999999999999999999
Q ss_pred CCEEEEeeC
Q 011556 472 QRRVGFAPK 480 (483)
Q Consensus 472 ~~rIGFa~~ 480 (483)
++|||||++
T Consensus 390 ~~riGfa~~ 398 (413)
T 3vla_A 390 TSRVGFSGT 398 (413)
T ss_dssp TTEEEEEEE
T ss_pred CCEEEEEEe
Confidence 999999985
No 2
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=100.00 E-value=4.7e-60 Score=490.31 Aligned_cols=341 Identities=23% Similarity=0.433 Sum_probs=274.0
Q ss_pred ceeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccC
Q 011556 122 ATTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDS 201 (483)
Q Consensus 122 ~~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~ 201 (483)
...+|++. +..+++|+++|.||||+|++.|+|||||+++||+|.+| .+|+||+.++|.++.|..
T Consensus 9 ~~~~pl~~--~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~~--------------~~Sst~~~~~C~s~~C~~ 72 (403)
T 3aup_A 9 LVVLPVQN--DGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQ--------------YSSKTYQAPFCHSTQCSR 72 (403)
T ss_dssp CEEEEEEE--CTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSC--------------CCCSSCBCCCTTBHHHHH
T ss_pred cEEEeeec--CCCCceEEEEEECCCCCceeEEEEECCCCceeECCCCC--------------CCCCCCCccCCCCccccC
Confidence 45688873 34678999999999999999999999999999998864 379999999999999987
Q ss_pred ccCC------CCCCCCCCCCCceeeEEcC-CCCeEEEEEEEEEEEecCC----------CccCceEEEEEEecC---CCc
Q 011556 202 LESG------TGMTPQCAGSTCVYGIEYG-DNSFSAGFFAKETLTLTSS----------DVFPNFLFGCGQYNR---GLY 261 (483)
Q Consensus 202 ~~~~------~~~~~~C~~~~c~y~i~Yg-dgs~~~G~~~~Dtl~l~~~----------~~~~~~~FG~~~~~~---g~~ 261 (483)
...+ ......|.+..|.|.+.|+ ||+.+.|.+++|+|+|++. ..++++.|||++... +.+
T Consensus 73 ~~~~~c~~c~~~~~s~~~~~~~~~~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~~ 152 (403)
T 3aup_A 73 ANTHQCLSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLP 152 (403)
T ss_dssp TTCCCEEECSSSCBTTBCSSEEEEEEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSSS
T ss_pred ccccCccccCCCCCCCCCCCcceeEeecCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCCC
Confidence 7544 1112357667899999998 7888999999999999862 378899999999874 334
Q ss_pred cCcceEeecCCCCCchhhhhccc--cCceEEEEcCCCCCCCceEEecCCCCCCC--C-C-----CceeeeCccCCCCCcc
Q 011556 262 GQAAGLLGLGQDSISLVSQTSRK--YKKYFSYCLPSSSSSTGHLTFGKAAGNGP--S-K-----TIKFTPLSTATADSSF 331 (483)
Q Consensus 262 ~~~~GilGLg~~~~Sl~sQ~~~~--~~~~FS~cL~~~~~~~G~L~fGg~d~~~~--~-~-----~~~~tpl~~~~~~~~~ 331 (483)
...+||||||++.+++++|++.. ..++||+||++.....|.|+||| |++++ . | ++.|+||+.++ ..+
T Consensus 153 ~~~dGIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~~~~~G~l~fGg-d~~~~~~~~G~~~~~~l~~~Pl~~~~--~~~ 229 (403)
T 3aup_A 153 RNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGD-APNNMRQFQNQDIFHDLAFTPLTITL--QGE 229 (403)
T ss_dssp TTCCEEEECSSSTTSHHHHHHHHHTCCSEEEEECCSCTTSCEEEEESC-HHHHC--CTTCCTTTTEEEEECEECT--TSC
T ss_pred CCCceEEECCCCCcCHHHHHHhhcCCCCeEEEEcCCCCCCCeeEEECC-CchhccccccccccCceeecccccCC--CCc
Confidence 57899999999999999998653 26899999998655689999999 87666 4 4 99999999854 369
Q ss_pred EEEEEeEEEECceec-ccCCcccC-----CCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCC
Q 011556 332 YGLDIIGLSVGGKKL-PIPISVFS-----SAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSN 405 (483)
Q Consensus 332 y~v~l~gisVgg~~l-~~~~~~f~-----~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 405 (483)
|.|.|++|+||++.+ .++...+. .+++||||||++++||+++|++|+++|.+.+..++.......++.||+-+
T Consensus 230 y~v~l~~i~v~g~~~~~~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c~~c~- 308 (403)
T 3aup_A 230 YNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSN- 308 (403)
T ss_dssp EEECEEEEEETTEEEECC------------CCEEECSSCSSEEECHHHHHHHHHHHHHTSCGGGEECCCTTCSCEECGG-
T ss_pred ceEEEEEEEECCEEcccCChhHeeeccCCCCCEEEECCCccEEeCHHHHHHHHHHHHHHhccccccCCCCCCCceEECC-
Confidence 999999999999998 77665552 25799999999999999999999999988764433222222345787533
Q ss_pred CcccccCeEEEEEcCC--cEEEEcCCceEEEcCCCeEEEEEEeCCCC-CCceEecHhhhcceEEEEECCCCEEEE-----
Q 011556 406 YTSISVPVISFFFNRG--VEVSIEGSAILIGSSPKQICLAFAGNSDD-SDVAIIGNVQQKTLEVVYDVAQRRVGF----- 477 (483)
Q Consensus 406 ~~~~~~P~i~~~f~gg--~~~~l~~~~~~~~~~~~~~Cl~~~~~~~~-~~~~IlG~~fl~~~~vvfD~~~~rIGF----- 477 (483)
....+|+|+|+|.|+ ++++|++++|+++..++..|++|+..+.. .+.||||++|||++|+|||++++||||
T Consensus 309 -~~~~~P~i~f~f~g~~~~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~rIGf~A~~~ 387 (403)
T 3aup_A 309 -KINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGFSTSSL 387 (403)
T ss_dssp -GCCCCCCEEEEESSTTCCEEEECHHHHEEEC---CEEECEEECCSCCSSSEEECHHHHTTSCEEEETTTTEEEEESSCG
T ss_pred -CcCcCCcEEEEEcCCCceEEEEcccceEEEcCCCeEEEEEEcCCCCCCCcEEEChHHhcCeEEEEECCCCEEEEecccc
Confidence 334799999999765 69999999999987656789999876432 358999999999999999999999999
Q ss_pred --eeCCCC
Q 011556 478 --APKGCS 483 (483)
Q Consensus 478 --a~~~C~ 483 (483)
++++|+
T Consensus 388 ~~~~~~C~ 395 (403)
T 3aup_A 388 HSHGVKCA 395 (403)
T ss_dssp GGGTCCGG
T ss_pred cccCCCcc
Confidence 778884
No 3
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=100.00 E-value=5.1e-58 Score=469.48 Aligned_cols=308 Identities=25% Similarity=0.421 Sum_probs=254.2
Q ss_pred eeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCccccC
Q 011556 123 TTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL-RFCYQQKEPIYDPSASRTYANVSCSSAICDS 201 (483)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~-~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~ 201 (483)
...|+. ++.+.+|+++|+||||||++.|+|||||+++||+|..|. ..|..+ +.|||++|+||+...
T Consensus 46 ~~~~l~---n~~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C~~~--~~y~~~~SsT~~~~~-------- 112 (370)
T 3psg_A 46 GDEPLE---NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDH--NQFNPDDSSTFEATS-------- 112 (370)
T ss_dssp CCCTTG---GGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTS--CCBCGGGCTTCEEEE--------
T ss_pred ceecce---eccCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCcccCCC--CCCCCccCcCcEECC--------
Confidence 456665 456889999999999999999999999999999999993 357654 899999999999975
Q ss_pred ccCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCC-Cc--cCcceEeecCCCCCch-
Q 011556 202 LESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRG-LY--GQAAGLLGLGQDSISL- 277 (483)
Q Consensus 202 ~~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g-~~--~~~~GilGLg~~~~Sl- 277 (483)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||++...+ .| ..++||||||++.++.
T Consensus 113 ---------------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~-~~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~ 175 (370)
T 3psg_A 113 ---------------QELSITYGTGS-MTGILGYDTVQVGG-ISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISAS 175 (370)
T ss_dssp ---------------EEEEEESSSCE-EEEEEEEEEEEETT-EEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGG
T ss_pred ---------------cEEEEEeCCce-EEEEEEEEEEeeCC-cccCCeEEEEEEeecccccccCCccceeccCCcccccc
Confidence 69999999997 89999999999998 4899999999998876 23 3689999999987653
Q ss_pred -----hhhhccc---cCceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccC
Q 011556 278 -----VSQTSRK---YKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIP 349 (483)
Q Consensus 278 -----~sQ~~~~---~~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~ 349 (483)
..++..+ ..++||+||.+.....|+|+|||+|++++.+++.|+|+.. ..+|.|.|++|+|+++.+...
T Consensus 176 ~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~ 251 (370)
T 3psg_A 176 GATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSV----EGYWQITLDSITMDGETIACS 251 (370)
T ss_dssp GCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSE----ETTEEEEECEEESSSSEEECT
T ss_pred CCCCHHHHHHHCCCCCCCEEEEEEccCCCCCeEEEEEeeChHhcCCcceeecccc----cceeEEEEeEEEECCEEEecC
Confidence 2333222 2799999999875568999999999999999999999997 679999999999999887643
Q ss_pred CcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCC
Q 011556 350 ISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGS 429 (483)
Q Consensus 350 ~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~ 429 (483)
.. ..+||||||++++||++++++|.+++++.. ... .+|.++|.....+|+|+|+| ||++++|+++
T Consensus 252 ~~----~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~----~~~------g~~~v~C~~~~~lP~i~f~~-~g~~~~l~~~ 316 (370)
T 3psg_A 252 GG----CQAIVDTGTSLLTGPTSAIANIQSDIGASE----NSD------GEMVISCSSIDSLPDIVFTI-DGVQYPLSPS 316 (370)
T ss_dssp TC----EEEEECTTCCSEEEEHHHHHHHHHHTTCEE----CTT------CCEECCGGGGGGCCCEEEEE-TTEEEEECHH
T ss_pred CC----ceEEEcCCCCcEECCHHHHHHHHHHhCCcc----cCC------CcEEEECCCcccCCcEEEEE-CCEEEEECHH
Confidence 22 469999999999999999999999997642 111 13445555567899999999 7899999999
Q ss_pred ceEEEcCCCeEEE-EEEeCCC---CCCceEecHhhhcceEEEEECCCCEEEEeeCC
Q 011556 430 AILIGSSPKQICL-AFAGNSD---DSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKG 481 (483)
Q Consensus 430 ~~~~~~~~~~~Cl-~~~~~~~---~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 481 (483)
+|+++ .+..|+ +|.+.+. .+..||||++|||++|+|||++++|||||++.
T Consensus 317 ~yi~~--~~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfA~a~ 370 (370)
T 3psg_A 317 AYILQ--DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 370 (370)
T ss_dssp HHEEE--CSSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred Hhccc--CCCEEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCEEEEEEcC
Confidence 99998 345698 5766431 23479999999999999999999999999974
No 4
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=100.00 E-value=5e-57 Score=459.32 Aligned_cols=311 Identities=23% Similarity=0.408 Sum_probs=254.6
Q ss_pred eeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCccccC
Q 011556 123 TTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL-RFCYQQKEPIYDPSASRTYANVSCSSAICDS 201 (483)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~-~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~ 201 (483)
..+|+.+ ..+.+|+++|.||||+|++.|+|||||+++||+|.+|. ..|..+ +.|||++|+||+...
T Consensus 13 ~~~~l~n---~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~--~~y~~~~SsT~~~~~-------- 79 (351)
T 1tzs_A 13 AKEPLIN---YLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTH--SRFQPSQSSTYSQPG-------- 79 (351)
T ss_dssp -CCTTGG---GSSSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTS--CCBCGGGCTTCBCCS--------
T ss_pred cceecee---cCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccCCC--CcCCcccCcceEECC--------
Confidence 4567653 46789999999999999999999999999999999994 368754 899999999998864
Q ss_pred ccCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCC-c--cCcceEeecCCCCCch-
Q 011556 202 LESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGL-Y--GQAAGLLGLGQDSISL- 277 (483)
Q Consensus 202 ~~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~-~--~~~~GilGLg~~~~Sl- 277 (483)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||++...+. + ...+||||||++.++.
T Consensus 80 ---------------~~~~i~Yg~Gs-~~G~~~~D~v~ig~-~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~ 142 (351)
T 1tzs_A 80 ---------------QSFSIQYGTGS-LSGIIGADQVSVEG-LTVVGQQFGESVTEPGQTFVDAEFDGILGLGYPSLAVG 142 (351)
T ss_dssp ---------------CEEEEESSSCE-EEEEEEEEEEEETT-EEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGSGG
T ss_pred ---------------CEEEEEeCCCC-eEEEEEEeEEEECC-eEECCeEEEEEEeccccccccCCCceEEecCCcccccc
Confidence 69999999997 89999999999998 48999999999987662 3 3689999999987653
Q ss_pred -----hhhhccc---cCceEEEEcCCCCCC--CceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecc
Q 011556 278 -----VSQTSRK---YKKYFSYCLPSSSSS--TGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLP 347 (483)
Q Consensus 278 -----~sQ~~~~---~~~~FS~cL~~~~~~--~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~ 347 (483)
+.|+..+ .+++||+||.+.... .|.|+|||+|++++.+++.|+|+.. ..+|.|.|++|+|+++.+.
T Consensus 143 ~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~ 218 (351)
T 1tzs_A 143 GVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWVPVTK----QAYWQIALDNIQVGGTVMF 218 (351)
T ss_dssp GCCCHHHHHHHTTCCSSSEEEEECCCCC--CTTCEEEETSCCGGGBCSCCEEEECSE----ETTEEEEEEEEEETTEEEE
T ss_pred CCCcHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEECCCCHHHcCCceEEEecCC----CceEEEEeCEEEECCceEE
Confidence 3333332 279999999986543 7999999999989999999999987 5799999999999998864
Q ss_pred cCCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEc
Q 011556 348 IPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIE 427 (483)
Q Consensus 348 ~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~ 427 (483)
.... ..+||||||++++||+++|++|.+++++.. .. + .+..+|+ ....+|+|+|+| +|++++|+
T Consensus 219 ~~~~----~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~---~~--g-~~~~~C~-----~~~~~P~i~f~f-~g~~~~i~ 282 (351)
T 1tzs_A 219 CSEG----CQAIVDTGTSLITGPSDKIKQLQNAIGAAP---VD--G-EYAVECA-----NLNVMPDVTFTI-NGVPYTLS 282 (351)
T ss_dssp CTTC----EEEEECTTCSSEEECHHHHHHHHHHHTCEE---CS--S-SEEECGG-----GGGGSCCEEEEE-TTEEEEEC
T ss_pred cCCC----ceEEeccCCcceeCCHHHHHHHHHHhCCcc---cC--C-eEEEeCC-----CCccCCcEEEEE-CCEEEEEC
Confidence 3221 469999999999999999999999997642 11 2 2233564 345789999999 78999999
Q ss_pred CCceEEEcCC--CeEEE-EEEeCC---CCCCceEecHhhhcceEEEEECCCCEEEEeeCCCC
Q 011556 428 GSAILIGSSP--KQICL-AFAGNS---DDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGCS 483 (483)
Q Consensus 428 ~~~~~~~~~~--~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 483 (483)
+++|+++... ...|+ +|.+.+ ...+.||||++|||++|+|||++++|||||+++|.
T Consensus 283 ~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfA~~~~~ 344 (351)
T 1tzs_A 283 PTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPAVPW 344 (351)
T ss_dssp TTTSEECC-----CCEEESEEECCCCTTTCSCEEECHHHHHHEEEEEETTTTEEEEEEBC--
T ss_pred HHHhEeeccCCCCCeEEEEEEECCCCCCCCCeEEEChHHhhheEEEEECCCCEEEEEECCcc
Confidence 9999987542 45799 687653 13568999999999999999999999999999984
No 5
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=100.00 E-value=1.8e-57 Score=466.78 Aligned_cols=307 Identities=21% Similarity=0.373 Sum_probs=256.8
Q ss_pred eeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc---ccccCCCCCCCCCCCCCccceecCCCccc
Q 011556 123 TTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL---RFCYQQKEPIYDPSASRTYANVSCSSAIC 199 (483)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~---~~C~~~~~~~fdps~SsT~~~~~C~s~~C 199 (483)
..+|+.+ +.+.+|+++|+||||+|+|.|+|||||+++||+|..|. ..|..+ +.|||++|+||+...
T Consensus 51 ~~~~l~n---~~~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~--~~y~~~~SsT~~~~~------ 119 (383)
T 2x0b_A 51 SSVILTN---YMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH--KLFDASDSSSYKHNG------ 119 (383)
T ss_dssp CEEEEEE---ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTS--CCBCGGGCTTCEEEE------
T ss_pred ceEeeee---cCCCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCC--CCCCCCCCCcEEECC------
Confidence 4577763 56789999999999999999999999999999999995 369865 899999999999875
Q ss_pred cCccCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCC-Cc--cCcceEeecCCCCCc
Q 011556 200 DSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRG-LY--GQAAGLLGLGQDSIS 276 (483)
Q Consensus 200 ~~~~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g-~~--~~~~GilGLg~~~~S 276 (483)
|.|.+.|++|+ ++|.+++|+|+|++. .++ +.|||++...+ .| ..++||||||++.++
T Consensus 120 -----------------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~-~v~-~~Fg~a~~~~g~~f~~~~~dGIlGLg~~~~s 179 (383)
T 2x0b_A 120 -----------------TELTLRYSTGT-VSGFLSQDIITVGGI-TVT-QMFGEVTEMPALPFMLAEFDGVVGMGFIEQA 179 (383)
T ss_dssp -----------------EEEEEECSSCE-EEEEEEEEEEEETTE-EEE-EEEEEEEECCHHHHTTCSSSEEEECSCGGGC
T ss_pred -----------------cEEEEEcCCcc-EEEEEEeeEEEEcCc-eEE-EEEEEEEecCCcccccCCCceEeccCCCccc
Confidence 79999999997 899999999999984 888 99999998866 23 378999999999876
Q ss_pred h----------hhhhccccCceEEEEcCCCCCC----CceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEEC
Q 011556 277 L----------VSQTSRKYKKYFSYCLPSSSSS----TGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVG 342 (483)
Q Consensus 277 l----------~sQ~~~~~~~~FS~cL~~~~~~----~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVg 342 (483)
. .+|.... +++||+||.+.... .|+|+|||+|++++.+++.|+|+.. ..+|.|.|++|+|+
T Consensus 180 ~~~~~~~~~~l~~qg~i~-~~~FS~~L~~~~~~~~~~~G~l~fGg~d~~~y~G~l~~~pv~~----~~~w~v~l~~i~v~ 254 (383)
T 2x0b_A 180 IGRVTPIFDNIISQGVLK-EDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIK----TGVWQIQMKGVSVG 254 (383)
T ss_dssp GGGCCCHHHHHHTTTCCS-SSEEEEEECCSCC----CCEEEEESSCCGGGEEEEEEEEEBSS----TTSCEEEECEEEES
T ss_pred cCCCCcHHHHHHhCCCCC-CCEEEEEEcCCCCcccCCCcEEEECCcChHHcCCceEEEEcCC----CceEEEEEeEEEeC
Confidence 3 3443332 79999999986443 7999999999989999999999987 67999999999999
Q ss_pred ceecccCCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCc
Q 011556 343 GKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGV 422 (483)
Q Consensus 343 g~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~ 422 (483)
++.+..... ..+||||||+++++|+++|++|.+++++.. ..+. +..+|+ ....+|+|+|+| +|+
T Consensus 255 ~~~~~~~~~----~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~-----~~g~-~~v~C~-----~~~~~P~i~f~~-~g~ 318 (383)
T 2x0b_A 255 SSTLLCEDG----CLALVDTGASYISGSTSSIEKLMEALGAKK-----RLFD-YVVKCN-----EGPTLPDISFHL-GGK 318 (383)
T ss_dssp SCCCBSTTC----EEEEECTTCSSEEECHHHHHHHHHHHTCEE-----CSSC-EEEEGG-----GTTTCCCEEEEE-TTE
T ss_pred CceEEcCCC----cEEEEcCCCceEEcCHHHHHHHHHHhCCcc-----cCCc-EEEecc-----ccccCceEEEEE-CCE
Confidence 987542221 469999999999999999999999997652 2222 233575 345799999999 789
Q ss_pred EEEEcCCceEEEcCC--CeEEE-EEEeCC---CCCCceEecHhhhcceEEEEECCCCEEEEeeCC
Q 011556 423 EVSIEGSAILIGSSP--KQICL-AFAGNS---DDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKG 481 (483)
Q Consensus 423 ~~~l~~~~~~~~~~~--~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 481 (483)
+++|++++|+++... ...|+ +|.+.+ ...+.||||++|||++|+|||++++|||||+++
T Consensus 319 ~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~a~ 383 (383)
T 2x0b_A 319 EYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 383 (383)
T ss_dssp EEEECHHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEECHHHhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeEEEcC
Confidence 999999999987642 46899 687653 135689999999999999999999999999874
No 6
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=100.00 E-value=5.4e-57 Score=464.00 Aligned_cols=330 Identities=22% Similarity=0.435 Sum_probs=264.2
Q ss_pred eeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCc
Q 011556 123 TTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSL 202 (483)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 202 (483)
..+|++. +..+.+|+++|+|||| |+|||||+++||+|.+| + +|+.++|+++.|...
T Consensus 3 ~~~pv~~--~~~~~~Y~~~i~iGtP-----v~~DTGSs~lWv~c~~~----~-------------~~~~~~C~s~~C~~~ 58 (381)
T 1t6e_X 3 VLAPVTK--DPATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGG----Q-------------PPAEIPCSSPTCLLA 58 (381)
T ss_dssp EEEEEEE--CTTTCCEEEEEETTEE-----EEEETTCCCEEECCCTT----C-------------CCCCCBTTSHHHHHH
T ss_pred eEEeEEe--cCCCcEEEEEEeCCCE-----EEEECCCCceEEeCCCC----C-------------CCCccCCCCchhccc
Confidence 3467753 4567899999999998 99999999999999864 1 366788988888765
Q ss_pred cCCCCCCCCCC---------CCCc-eeeEEcCCCCeEEEEEEEEEEEecC---CCccCce----EEEEEEec--CCCccC
Q 011556 203 ESGTGMTPQCA---------GSTC-VYGIEYGDNSFSAGFFAKETLTLTS---SDVFPNF----LFGCGQYN--RGLYGQ 263 (483)
Q Consensus 203 ~~~~~~~~~C~---------~~~c-~y~i~Ygdgs~~~G~~~~Dtl~l~~---~~~~~~~----~FG~~~~~--~g~~~~ 263 (483)
..+. ...|+ +..| .|.++|+||+.++|.+++|+|+|++ ...++++ .|||++.+ .+.+..
T Consensus 59 ~~~~--~~sc~~~~~~~~~~~~~c~~f~i~YgdGs~~~G~l~~Dtv~ig~~~g~~~v~~~~~~~~Fg~~~~~~~~~~~~~ 136 (381)
T 1t6e_X 59 NAYP--APGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASLPRG 136 (381)
T ss_dssp HSSC--CTTCCCCCC------CBCEECCBCTTTCCBCCEEEEEEEEEEEEESSSSEEEEEEEEEEEEECCGGGGTTSCTT
T ss_pred cCCC--CCCCCCccCCcCcCCCccccccccccCCceeeEEEEEEEEEeeccCCCccccceeeeeEeecCcccccCCCCCC
Confidence 4331 22454 2457 5999999998789999999999984 2356665 56999876 445568
Q ss_pred cceEeecCCCCCchhhhhccc--cCceEEEEcCCCCCCCceEEecCCCCC--CCCCCceeeeCccCCCCCccEEEEEeEE
Q 011556 264 AAGLLGLGQDSISLVSQTSRK--YKKYFSYCLPSSSSSTGHLTFGKAAGN--GPSKTIKFTPLSTATADSSFYGLDIIGL 339 (483)
Q Consensus 264 ~~GilGLg~~~~Sl~sQ~~~~--~~~~FS~cL~~~~~~~G~L~fGg~d~~--~~~~~~~~tpl~~~~~~~~~y~v~l~gi 339 (483)
.+||||||++++|+++|+..+ .+++||+||++. ..|+|+|||.|.. ++.+++.|+||+.++.. .+|+|.|++|
T Consensus 137 ~dGIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~--~~G~l~fGg~~~~~~~~~g~l~~tPl~~~~~~-~~y~v~l~~i 213 (381)
T 1t6e_X 137 STGVAGLANSGLALPAQVASAQKVANRFLLCLPTG--GPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGS-PAHYISARSI 213 (381)
T ss_dssp EEEEEECSSSTTSHHHHHHHHHTCCSEEEEECCSS--SCEEEEESCCSCSCHHHHTTCCEEECBCCTTC-CSCEECEEEE
T ss_pred CceEEEeCCCcchhHHHHhhhcccCceEEEEeCCC--CCeeEEeCCcccccccccCcceeeccccCCCC-cceEEEEEEE
Confidence 899999999999999998763 379999999875 5799999997653 36799999999986543 3566999999
Q ss_pred EECceecccCCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhc-------cCCCC-CCCCCCccceecCCCc----
Q 011556 340 SVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMS-------KYPTA-PALSILDTCYDFSNYT---- 407 (483)
Q Consensus 340 sVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~-------~~~~~-~~~~~~~~C~~~~~~~---- 407 (483)
+||++.+.++...|..+++||||||++++||+++|++|+++|.+.+. .++.. .....++.||+.++..
T Consensus 214 ~vg~~~~~~~~~~~~~~~~iiDTGTtl~~lp~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~C~~~~~~~~~~~ 293 (381)
T 1t6e_X 214 VVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLG 293 (381)
T ss_dssp EETTEECCCCTTCSCTTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEETT
T ss_pred EEcCEEecCCHHHccCCCEEEECCCccEEeCHHHHHHHHHHHHHhhcccccccccccccCCCCCCCCccCCCCCCccccc
Confidence 99999998887766447899999999999999999999999998874 23332 2234567899876532
Q ss_pred ccccCeEEEEEcCCcEEEEcCCceEEEcCCCeEEEEEEeCCC------CCCceEecHhhhcceEEEEECCCCEEEEeeCC
Q 011556 408 SISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAFAGNSD------DSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKG 481 (483)
Q Consensus 408 ~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl~~~~~~~------~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 481 (483)
...+|+|+|+|.||++++|++++|+++...+..|++|+..+. ..+.||||+.|||++|+|||++++|||||++.
T Consensus 294 ~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~~~~~ILGd~fl~~~yvvfD~~~~riGfA~~~ 373 (381)
T 1t6e_X 294 GYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLP 373 (381)
T ss_dssp EECCCCEEEEETTSCEEEECHHHHEEEEETTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEECC
T ss_pred CCcCCeEEEEECCCcEEEeCCCeEEEEcCCCeEEEEEEcCCCcccccCCCceEEEChHHhCCcEEEEECCCCEEEEeccc
Confidence 247899999997679999999999998766778999887643 13589999999999999999999999999854
No 7
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=100.00 E-value=3.1e-57 Score=455.73 Aligned_cols=306 Identities=21% Similarity=0.364 Sum_probs=254.1
Q ss_pred eeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCc-cccccCCCCCCCCCCCCCccceecCCCccccC
Q 011556 123 TTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPC-LRFCYQQKEPIYDPSASRTYANVSCSSAICDS 201 (483)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C-~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~ 201 (483)
..+|+.+ ..+.+|+++|.||||+|++.|+|||||+++||+|.+| ...|..+ +.|||++|+||+...
T Consensus 4 ~~~~l~n---~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~--~~y~~~~SsT~~~~~-------- 70 (323)
T 3cms_A 4 ASVPLTN---YLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNH--QRFDPRKSSTFQNLG-------- 70 (323)
T ss_dssp EEEEEEE---ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTS--CCBCGGGCTTCEEEE--------
T ss_pred ceeeeEe---ccCCEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCcccccCC--CCCCCccCCCeEECC--------
Confidence 4567753 4678999999999999999999999999999999999 3569755 799999999999875
Q ss_pred ccCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCC-Cc--cCcceEeecCCCCCch-
Q 011556 202 LESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRG-LY--GQAAGLLGLGQDSISL- 277 (483)
Q Consensus 202 ~~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g-~~--~~~~GilGLg~~~~Sl- 277 (483)
|.|.+.|++|+ +.|.+++|+|+|++. .++++.|||++...+ .| ...+||||||++.++.
T Consensus 71 ---------------~~~~i~Yg~Gs-~~G~~~~D~v~ig~~-~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~ 133 (323)
T 3cms_A 71 ---------------KPLSIHYGTGS-MQGILGYDTVTVSNI-VDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPSLASE 133 (323)
T ss_dssp ---------------EEEEEEETTEE-EEEEEEEEEEEETTE-EEEEEEEEEEEECCSHHHHHSSCSEEEECSCGGGSCT
T ss_pred ---------------cEEEEEeCCCC-eEEEEEEEEEEECCe-EEeccEEEEEEecccccccccCCceEEecCcchhhcc
Confidence 79999999997 899999999999984 899999999998866 33 3789999999987653
Q ss_pred -----hhhhccc---cCceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccC
Q 011556 278 -----VSQTSRK---YKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIP 349 (483)
Q Consensus 278 -----~sQ~~~~---~~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~ 349 (483)
+.|+..+ .+++||+||++... .|.|+|||+|++++.+++.|+|+.. ..+|.|.|++|+|+++.+.++
T Consensus 134 ~~~~~~~~l~~q~~i~~~~FS~~l~~~~~-~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~~~ 208 (323)
T 3cms_A 134 YSIPVFDNMMNRHLVAQDLFSVYMDRNGQ-ESMLTLGAIDPSYYTGSLHWVPVTV----QQYWQFTVDSVTISGVVVACE 208 (323)
T ss_dssp TCCCHHHHHHHTTCSSSSEEEEECCTTSS-CEEEEESCCCGGGEEEEEEEEECSS----BTTBEEEEEEEEETTEEEEST
T ss_pred CCCCHHHHHHHCCCCCCCEEEEEECCCCC-CEEEEECCCChhhccCceEEEECcc----CCeEEEEEeeEEECCEEeecC
Confidence 2333322 27999999998644 3999999999988999999999987 579999999999999987654
Q ss_pred CcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCC
Q 011556 350 ISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGS 429 (483)
Q Consensus 350 ~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~ 429 (483)
.. ..+||||||++++||+++|++|++++++... ..+ .+..+|+ ....+|+|+|+| +|++++|+++
T Consensus 209 ~~----~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~----~~g-~~~~~C~-----~~~~~P~i~f~f-~g~~~~i~~~ 273 (323)
T 3cms_A 209 GG----CQAILDTGTSKLVGPSSDILNIQQAIGATQN----QYG-EFDIDCD-----NLSYMPTVVFEI-NGKMYPLTPS 273 (323)
T ss_dssp TC----EEEEECTTCCSEEECHHHHHHHHHHHTCEEE----TTT-EEEECTT-----CTTTSCCEEEEE-TTEEEEECHH
T ss_pred CC----cEEEEecCCccEeCCHHHHHHHHHHhCCeec----CCC-cEEEECC-----CCccCceEEEEE-CCEEEEECHH
Confidence 32 4699999999999999999999999975421 111 1223454 445789999999 7899999999
Q ss_pred ceEEEcCCCeEEE-EEEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCC
Q 011556 430 AILIGSSPKQICL-AFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKG 481 (483)
Q Consensus 430 ~~~~~~~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 481 (483)
+|+++ ....|+ +|.+.+ ..+.||||++|||++|+|||++++|||||+++
T Consensus 274 ~y~~~--~~~~C~~~i~~~~-~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 323 (323)
T 3cms_A 274 AYTSQ--DQGFCTSGFQSEN-HSQKWILGDVFIREYYSVFDRANNLVGLAKAI 323 (323)
T ss_dssp HHEEE--ETTEEEESEEEC----CCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred HhccC--CCCEEEEEEEeCC-CCCcEEECHHHhhceEEEEECCCCEEEEEECC
Confidence 99988 467899 587653 34689999999999999999999999999874
No 8
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=100.00 E-value=1.1e-56 Score=452.97 Aligned_cols=307 Identities=24% Similarity=0.452 Sum_probs=257.0
Q ss_pred eeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccc-cccCCCCCCCCCCCCCccceecCCCccccC
Q 011556 123 TTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLR-FCYQQKEPIYDPSASRTYANVSCSSAICDS 201 (483)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~-~C~~~~~~~fdps~SsT~~~~~C~s~~C~~ 201 (483)
.++|+++ ..+.+|+++|.||||+|++.|+|||||+++||+|.+|.. .|..+ +.|||++|+||+...
T Consensus 3 ~~~~l~~---~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~--~~y~~~~SsT~~~~~-------- 69 (329)
T 1dpj_A 3 HDVPLTN---YLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLH--SKYDHEASSSYKANG-------- 69 (329)
T ss_dssp EEEECEE---ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTS--CCBCGGGCTTCEEEE--------
T ss_pred cceeeee---cCCCEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCcccCCc--CcCCcccCcCeEECC--------
Confidence 4567763 457899999999999999999999999999999999943 58765 799999999999864
Q ss_pred ccCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCC-Cc--cCcceEeecCCCCCchh
Q 011556 202 LESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRG-LY--GQAAGLLGLGQDSISLV 278 (483)
Q Consensus 202 ~~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g-~~--~~~~GilGLg~~~~Sl~ 278 (483)
|.|.+.|++| .+.|.+++|+|+|++ ..++++.|||++...+ .| ...+||||||+..+++.
T Consensus 70 ---------------~~~~i~Yg~G-s~~G~~~~D~v~ig~-~~~~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s~~ 132 (329)
T 1dpj_A 70 ---------------TEFAIQYGTG-SLEGYISQDTLSIGD-LTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVD 132 (329)
T ss_dssp ---------------EEEEEEETTE-EEEEEEEEEEEEETT-EEEEEEEEEEEEECCHHHHTTCSCSEEEECSCGGGCGG
T ss_pred ---------------cEEEEEECCc-eEEEEEEEEEEEECC-eEECCeEEEEEEecCccccccCCcceEEEeCCchhhcc
Confidence 7999999999 589999999999998 4899999999998765 23 36899999999887642
Q ss_pred ------hhhccc---cCceEEEEcCCCC---CCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceec
Q 011556 279 ------SQTSRK---YKKYFSYCLPSSS---SSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKL 346 (483)
Q Consensus 279 ------sQ~~~~---~~~~FS~cL~~~~---~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l 346 (483)
.|+..+ .+++||+||.+.. ...|.|+|||+|++++.+++.|+|+.. +.+|.|.|++|+|+++.+
T Consensus 133 ~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~ 208 (329)
T 1dpj_A 133 KVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRR----KAYWEVKFEGIGLGDEYA 208 (329)
T ss_dssp GCCCHHHHHHHTTCCSSSEEEEEECCGGGTCSSSEEEEESSCCGGGEEEEEEEEECSS----BTTBEEEEEEEEETTEEE
T ss_pred CCCCHHHHHHhcCCcCCCEEEEEecCCCCCCCCCcEEEEcCCChhhcCCceEEEEcCC----CceEEEEeeeEEECCeEe
Confidence 222222 1689999998753 247999999999988999999999987 579999999999999887
Q ss_pred ccCCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEE
Q 011556 347 PIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSI 426 (483)
Q Consensus 347 ~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l 426 (483)
.... ..+||||||++++||+++|++|++++++. .. .+.||.++|.....+|+|+|+| +|++++|
T Consensus 209 ~~~~-----~~aiiDSGTt~~~lP~~~~~~l~~~~~~~----~~------~~g~~~~~C~~~~~~P~i~f~f-~g~~~~i 272 (329)
T 1dpj_A 209 ELES-----HGAAIDTGTSLITLPSGLAEMINAEIGAK----KG------WTGQYTLDCNTRDNLPDLIFNF-NGYNFTI 272 (329)
T ss_dssp ECSS-----CEEEECTTCSCEEECHHHHHHHHHHHTCE----EC------TTSSEEECGGGGGGCCCEEEEE-TTEEEEE
T ss_pred cCCC-----ccEEeeCCCCcEECCHHHHHHHHHHhCCc----cC------CCCeEEEECCCCCcCCcEEEEE-CCEEEEE
Confidence 5322 46999999999999999999999999653 11 1235666666667899999999 6899999
Q ss_pred cCCceEEEcCCCeEEE-EEEeCC---CCCCceEecHhhhcceEEEEECCCCEEEEeeCC
Q 011556 427 EGSAILIGSSPKQICL-AFAGNS---DDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKG 481 (483)
Q Consensus 427 ~~~~~~~~~~~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 481 (483)
++++|+++.. ..|+ +|.+.+ ...+.||||++|||++|+|||++++|||||+++
T Consensus 273 ~~~~y~~~~~--~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 329 (329)
T 1dpj_A 273 GPYDYTLEVS--GSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI 329 (329)
T ss_dssp CTTTSEEEET--TEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CHHHhEecCC--CEEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEEEEECC
Confidence 9999999864 6898 677652 234689999999999999999999999999874
No 9
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=100.00 E-value=6.6e-57 Score=455.42 Aligned_cols=302 Identities=23% Similarity=0.385 Sum_probs=253.6
Q ss_pred eeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCC--Cccc--------cccCCCCCCCCCCCCCcccee
Q 011556 123 TTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCE--PCLR--------FCYQQKEPIYDPSASRTYANV 192 (483)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~--~C~~--------~C~~~~~~~fdps~SsT~~~~ 192 (483)
+.+|+.+. +.+|+++|.||||+|++.|+|||||+++||+|. +|.. .|..+ +.|||++|+||+..
T Consensus 3 ~~~~l~~~----~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~--~~y~~~~SsT~~~~ 76 (334)
T 1j71_A 3 VPTTLINE----GPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQE--GTFDPSSSSSAQNL 76 (334)
T ss_dssp EEEEEEEC----SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSS--CCBCGGGCTTCEEE
T ss_pred eeEEEecC----CcEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCC--CcCCcccCCCcccC
Confidence 56777642 689999999999999999999999999999876 6742 47544 89999999999987
Q ss_pred cCCCccccCccCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCCccCcceEeecCC
Q 011556 193 SCSSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLYGQAAGLLGLGQ 272 (483)
Q Consensus 193 ~C~s~~C~~~~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~~~~~~GilGLg~ 272 (483)
. |.|.+.|+||+.++|.+++|+|+|++ ..++++.|||++... ..+||||||+
T Consensus 77 ~-----------------------~~~~i~Yg~Gs~~~G~~~~D~v~~g~-~~~~~~~fg~~~~~~----~~~GilGLg~ 128 (334)
T 1j71_A 77 N-----------------------QDFSIEYGDLTSSQGSFYKDTVGFGG-ISIKNQQFADVTTTS----VDQGIMGIGF 128 (334)
T ss_dssp E-----------------------EEEEEEBTTSCEEEEEEEEEEEEETT-EEEEEEEEEEEEEES----SSSCEEECSC
T ss_pred C-----------------------CceEEEECCCCEEEEEEEEEEEEECC-EEEccEEEEEEEecC----CCccEEEEcC
Confidence 5 79999999998889999999999998 489999999999864 5789999999
Q ss_pred CCC--------chhhhhcccc---CceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEE
Q 011556 273 DSI--------SLVSQTSRKY---KKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSV 341 (483)
Q Consensus 273 ~~~--------Sl~sQ~~~~~---~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisV 341 (483)
+.+ +++.|+..+. +++||+||.+.....|.|+|||+|++++.+++.|+|+.. ..+|.|.|++|+|
T Consensus 129 ~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v 204 (334)
T 1j71_A 129 TADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDASTGKIIFGGVDNAKYTGTLTALPVTS----SVELRVHLGSINF 204 (334)
T ss_dssp GGGSSTTCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSEEEEEEEEECCC----SSSCEEEEEEEEE
T ss_pred CcccCccccCCcHHHHHHHCCCCCccEEEEEeCCCCCCCeEEEEeeechHHccCceEEEEccC----CCeEEEEEeEEEE
Confidence 865 4555554431 689999999765568999999999999999999999987 4589999999999
Q ss_pred CceecccCCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCC
Q 011556 342 GGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRG 421 (483)
Q Consensus 342 gg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg 421 (483)
+++.+..+ ..+||||||++++||+++|++|++++++.+. .......+.+|+ .+|+|+|+|.||
T Consensus 205 ~g~~~~~~------~~~iiDSGTt~~~lP~~~~~~l~~~~~~~~~---~~~~~~~~~~C~--------~~p~i~f~f~~g 267 (334)
T 1j71_A 205 DGTSVSTN------ADVVLDSGTTITYFSQSTADKFARIVGATWD---SRNEIYRLPSCD--------LSGDAVFNFDQG 267 (334)
T ss_dssp TTEEEEEE------EEEEECTTCSSEEECHHHHHHHHHHHTCEEE---TTTTEEECSSSC--------CCSEEEEEESTT
T ss_pred CCEeccCC------ccEEEeCCCCcEecCHHHHHHHHHHcCCccc---CCCceEEEEcCC--------CCCceEEEEcCC
Confidence 99987543 3599999999999999999999999987642 111111214573 289999999778
Q ss_pred cEEEEcCCceEEEcCCCeEEEE-EEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCCCC
Q 011556 422 VEVSIEGSAILIGSSPKQICLA-FAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGCS 483 (483)
Q Consensus 422 ~~~~l~~~~~~~~~~~~~~Cl~-~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 483 (483)
++++|++++|+++...+..|++ +... +.||||++|||++|+|||++++|||||+++|+
T Consensus 268 ~~~~i~~~~y~~~~~~~~~C~~~i~~~----~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~ 326 (334)
T 1j71_A 268 VKITVPLSELILKDSDSSICYFGISRN----DANILGDNFLRRAYIVYDLDDKTISLAQVKYT 326 (334)
T ss_dssp CEEEEEGGGGEEECSSSSCEEESEEEC----TTCEECHHHHTTEEEEEETTTTEEEEEEECCC
T ss_pred cEEEECHHHheeecCCCCeeEEEEeEC----CCcEEChHhhccEEEEEECCCCEEEEEecCCC
Confidence 9999999999998654446985 5443 35999999999999999999999999999995
No 10
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=100.00 E-value=6.8e-57 Score=460.07 Aligned_cols=317 Identities=21% Similarity=0.351 Sum_probs=262.0
Q ss_pred CceeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc--ccccCCCCCCCCCCCCCccceecCCCcc
Q 011556 121 DATTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL--RFCYQQKEPIYDPSASRTYANVSCSSAI 198 (483)
Q Consensus 121 ~~~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~--~~C~~~~~~~fdps~SsT~~~~~C~s~~ 198 (483)
+...+|+.. ..+.+|+++|.||||+|++.|+|||||+++||+|.+|. ..|..+ +.|||++|+||+...
T Consensus 6 ~~~~~~l~~---~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~~~--~~y~~~~SsT~~~~~----- 75 (361)
T 1mpp_A 6 SVDTPGLYD---FDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGK--RFFDPSSSSTFKETD----- 75 (361)
T ss_dssp CEEEEEEEE---TTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSS--CCBCGGGCTTCEEEE-----
T ss_pred ccceEEeec---CCCCEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCCCC--CcCCCccCCceEecC-----
Confidence 345677763 46789999999999999999999999999999999996 368764 899999999999875
Q ss_pred ccCccCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCC------Cc--cCcceEeec
Q 011556 199 CDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRG------LY--GQAAGLLGL 270 (483)
Q Consensus 199 C~~~~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g------~~--~~~~GilGL 270 (483)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||++...+ .+ ...+|||||
T Consensus 76 ------------------~~~~i~Yg~Gs-~~G~~~~D~v~~g~-~~v~~~~fg~~~~~~~~~~~~~~~~~~~~~GilGL 135 (361)
T 1mpp_A 76 ------------------YNLNITYGTGG-ANGIYFRDSITVGG-ATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGA 135 (361)
T ss_dssp ------------------EEEEEECSSCE-EEEEEEEEEEEETT-EEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEEC
T ss_pred ------------------CeEEEEECCce-EEEEEEEEEEEECC-EEEeceEEEEEEeccCccccccccccCCCCCEEEe
Confidence 79999999997 89999999999998 4899999999998765 23 368999999
Q ss_pred CCCCCchhh------------hhccc---cCceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEE
Q 011556 271 GQDSISLVS------------QTSRK---YKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLD 335 (483)
Q Consensus 271 g~~~~Sl~s------------Q~~~~---~~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~ 335 (483)
|++.++... |+..+ ..++||+||.+. ...|.|+|||+|++++.+++.|+|+........+|.|.
T Consensus 136 g~~~~s~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~~~v~ 214 (361)
T 1mpp_A 136 AYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTN-DGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAP 214 (361)
T ss_dssp SCGGGSHHHHHHSCCCCCHHHHHHHTTSSSSSEEEEECCCS-SSEEEEEESSCCGGGBSSCCEEEECEEETTEEEEEEEE
T ss_pred CCcccccccccccccCCCHHHHHHHcCCCCCcEEEEEecCC-CCCcEEEEecCChhhcCCceEEEEcccCCCceeEEEEE
Confidence 998765432 33332 279999999985 45899999999998999999999998843222389999
Q ss_pred EeEEEECceecccCCcccCCCcEE-EcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCccccc-Ce
Q 011556 336 IIGLSVGGKKLPIPISVFSSAGAI-IDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISV-PV 413 (483)
Q Consensus 336 l~gisVgg~~l~~~~~~f~~~~~i-iDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~-P~ 413 (483)
|++|+|+++.+..+.. ..+| |||||++++||+++|++|++++.+. ++...+ .+..+|+. ...+ |+
T Consensus 215 l~~i~v~~~~~~~~~~----~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~---~~~~~g-~~~~~C~~-----~~~~~p~ 281 (361)
T 1mpp_A 215 VTGVKIDGSDAVSFDG----AQAFTIDTGTNFFIAPSSFAEKVVKAALPD---ATESQQ-GYTVPCSK-----YQDSKTT 281 (361)
T ss_dssp EEEEEETTEEEEEEEE----EEEEEEETTCCSEEEEHHHHHHHHHHHCTT---CEEETT-EEEEEHHH-----HTTCCCE
T ss_pred EeEEEECCeeeccCCC----CEEEEECCCCCceeCCHHHHHHHHHHhCCc---ccCCCC-cEEEECCC-----cccCCCc
Confidence 9999999988753321 4599 9999999999999999999999764 221111 13346753 3467 99
Q ss_pred EEEEEc-C-----CcEEEEcCCceEEEcC-CCeEEE-EEEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCCCC
Q 011556 414 ISFFFN-R-----GVEVSIEGSAILIGSS-PKQICL-AFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGCS 483 (483)
Q Consensus 414 i~~~f~-g-----g~~~~l~~~~~~~~~~-~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 483 (483)
|+|+|. + |++++|++++|+++.. ....|+ +|.+. ..+.||||++|||++|+|||++++|||||+++|+
T Consensus 282 i~f~f~~g~~~~~g~~~~i~~~~y~~~~~~~~~~C~~~i~~~--~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~~~ 357 (361)
T 1mpp_A 282 FSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPD--GGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLASG 357 (361)
T ss_dssp EEEEEECTTCSSCEEEEEEEGGGGEEECSSSSCEEEESEEEE--SSSCCEEEHHHHTTEEEEEETTTTEEEEEEBCTT
T ss_pred EEEEEEcCCcCCCCeEEEECHHHhEEecCCCCCeeEEEEEeC--CCCCEEEChHHhccEEEEEECCCCEEEEEEcccC
Confidence 999994 4 8999999999999864 356898 78775 3458999999999999999999999999999995
No 11
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=100.00 E-value=2.5e-56 Score=449.28 Aligned_cols=305 Identities=24% Similarity=0.472 Sum_probs=255.9
Q ss_pred eeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCccccCc
Q 011556 124 TIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL-RFCYQQKEPIYDPSASRTYANVSCSSAICDSL 202 (483)
Q Consensus 124 ~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~-~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 202 (483)
.+|+.+ ..+.+|+++|.||||+|++.|+|||||+++||+|.+|. ..|..+ +.|||++|+||+...
T Consensus 3 ~~~l~n---~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~--~~y~~~~SsT~~~~~--------- 68 (324)
T 1am5_A 3 TEQMKN---EADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNH--NKFKPRQSSTYVETG--------- 68 (324)
T ss_dssp EEEEEE---ETTTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHHHTS--CCBCGGGCTTCEEEE---------
T ss_pred eeeeec---CCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccccCC--CcCCCccCCCeEeCC---------
Confidence 466653 46789999999999999999999999999999999994 358765 799999999999875
Q ss_pred cCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCC-Cc--cCcceEeecCCCCCch--
Q 011556 203 ESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRG-LY--GQAAGLLGLGQDSISL-- 277 (483)
Q Consensus 203 ~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g-~~--~~~~GilGLg~~~~Sl-- 277 (483)
|.|.+.|++|+ +.|.+++|+|+|++. .++++.|||++...+ .+ ...+||||||++.++.
T Consensus 69 --------------~~~~i~Yg~Gs-~~G~~~~D~v~~g~~-~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~ 132 (324)
T 1am5_A 69 --------------KTVDLTYGTGG-MRGILGQDTVSVGGG-SDPNQELGESQTEPGPFQAAAPFDGILGLAYPSIAAAG 132 (324)
T ss_dssp --------------EEEEEECSSCE-EEEEEEEEEEESSSS-CEEEEEEEEEEECCSTTTTTCSSSEEEECSCGGGCGGG
T ss_pred --------------cEEEEEECCCC-eEEEEEECceeECCc-EEcccEEEEEEecccccccCCCCceEEecCCccccccC
Confidence 79999999997 599999999999984 899999999998866 23 3689999999987653
Q ss_pred ----hhhhccc---cCceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCC
Q 011556 278 ----VSQTSRK---YKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPI 350 (483)
Q Consensus 278 ----~sQ~~~~---~~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~ 350 (483)
+.|+..+ .+++||+||++.....|.|+|||+|++++.+++.|+|+.. ..+|.|.|++|+|+++.+..+.
T Consensus 133 ~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~~~~ 208 (324)
T 1am5_A 133 AVPVFDNMGSQSLVEKDLFSFYLSGGGANGSEVMLGGVDNSHYTGSIHWIPVTA----EKYWQVALDGITVNGQTAACEG 208 (324)
T ss_dssp CCCHHHHHHHTTCSSSSEEEEECCSTTCSCEEEEESSCCGGGBCSCCEEEEEEE----ETTEEEEECEEEETTEECCCCC
T ss_pred CCchHHhHHhcCCCCCCEEEEEecCCCCCCcEEEECccCHHHcCCceEEEecCC----CcEEEEEEeEEEECCceeeccC
Confidence 3333332 2799999999875568999999999989999999999987 5799999999999998764322
Q ss_pred cccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCc
Q 011556 351 SVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSA 430 (483)
Q Consensus 351 ~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~ 430 (483)
..+||||||++++||+++|++|.+++++. . ..+ .+..+|+ ....+|+|+|+| +|++++|++++
T Consensus 209 -----~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-~----~~g-~~~~~C~-----~~~~~P~i~f~f-~g~~~~i~~~~ 271 (324)
T 1am5_A 209 -----CQAIVDTGTSKIVAPVSALANIMKDIGAS-E----NQG-EMMGNCA-----SVQSLPDITFTI-NGVKQPLPPSA 271 (324)
T ss_dssp -----EEEEECTTCSSEEECTTTHHHHHHHHTCE-E----CCC-CEECCTT-----SSSSSCCEEEEE-TTEEEEECHHH
T ss_pred -----ceEEEecCCccEECCHHHHHHHHHHhCCc-c----cCC-cEEEeCC-----CcccCCcEEEEE-CCEEEEECHHH
Confidence 35999999999999999999999999764 1 111 1233464 445799999999 78999999999
Q ss_pred eEEEcCCCeEEE-EEEeCC---CCCCceEecHhhhcceEEEEECCCCEEEEeeCC
Q 011556 431 ILIGSSPKQICL-AFAGNS---DDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKG 481 (483)
Q Consensus 431 ~~~~~~~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 481 (483)
|+++. ...|+ +|.+.+ ...+.||||++|||++|+|||++++|||||+++
T Consensus 272 y~~~~--~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~a~ 324 (324)
T 1am5_A 272 YIEGD--QAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPAA 324 (324)
T ss_dssp HEEES--SSCEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred hcccC--CCeEEEEEEECccCCCCCCcEEEChHHhccEEEEEECCCCEEEEEECC
Confidence 99986 66898 687653 134689999999999999999999999999974
No 12
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=100.00 E-value=2.4e-56 Score=452.74 Aligned_cols=305 Identities=23% Similarity=0.396 Sum_probs=252.6
Q ss_pred eeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCC--Ccc--------ccccCCCCCCCCCCCCCcccee
Q 011556 123 TTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCE--PCL--------RFCYQQKEPIYDPSASRTYANV 192 (483)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~--~C~--------~~C~~~~~~~fdps~SsT~~~~ 192 (483)
+.+|+.+ ++.+|+++|.||||+|++.|+|||||+++||+|. +|. ..|.. ++.|||++|+||+..
T Consensus 3 v~~~l~~----~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~--~~~y~~~~SsT~~~~ 76 (342)
T 2qzx_A 3 VAVTLHN----EAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKS--AGSYSPASSRTSQNL 76 (342)
T ss_dssp EEEEEEE----CSSCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGT--TCCBCGGGCTTCEEE
T ss_pred eeEEEec----CCeEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccC--CCcCCcccCCCcccC
Confidence 4567754 3689999999999999999999999999999866 674 24754 489999999999987
Q ss_pred cCCCccccCccCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCCccCcceEeecCC
Q 011556 193 SCSSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLYGQAAGLLGLGQ 272 (483)
Q Consensus 193 ~C~s~~C~~~~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~~~~~~GilGLg~ 272 (483)
. |.|.+.|++|+.+.|.+++|+|+|++ ..++++.|||++... ..+||||||+
T Consensus 77 ~-----------------------~~~~i~Yg~Gs~~~G~~~~D~v~~g~-~~v~~~~fg~~~~~~----~~~GilGLg~ 128 (342)
T 2qzx_A 77 N-----------------------TRFDIKYGDGSYAKGKLYKDTVGIGG-VSVRDQLFANVWSTS----ARKGILGIGF 128 (342)
T ss_dssp E-----------------------EEEEEECTTSCEEEEEEEEEEEEETT-EEEEEEEEEEEEEEC----SSSCEEECSC
T ss_pred C-----------------------CcEEEEeCCCCeEEEEEEEEEEEECC-EEecceEEEEEEecC----CCcCEEEEcc
Confidence 5 79999999998889999999999998 489999999999864 5789999999
Q ss_pred CCC--------chhhhhcccc---CceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEE
Q 011556 273 DSI--------SLVSQTSRKY---KKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSV 341 (483)
Q Consensus 273 ~~~--------Sl~sQ~~~~~---~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisV 341 (483)
... +++.|+..+. +++||+||++.....|.|+|||+|++++.+++.|+|+.. ..+|.|.|++|+|
T Consensus 129 ~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v 204 (342)
T 2qzx_A 129 QSGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEASTGQIIFGGIDKAKYSGSLVDLPITS----EKKLTVGLRSVNV 204 (342)
T ss_dssp GGGCSSSSCCCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEECCC----SSSCEEEEEEEEE
T ss_pred ccccCCCccCccHHHHHHHCCCcCccEEEEEeCCCCCCCeEEEECccchhhEecceEEEeccC----CceEEEEEeEEEE
Confidence 864 4555554432 689999999765568999999999999999999999987 4589999999999
Q ss_pred CceecccCCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCC
Q 011556 342 GGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRG 421 (483)
Q Consensus 342 gg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg 421 (483)
+++.+..+ .++||||||++++||+++|++|++++++.+.. ....+..+..+| . .+|+|+|+|.||
T Consensus 205 ~g~~~~~~------~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~-~~~~~~~~~~~C-----~---~~p~i~f~f~~g 269 (342)
T 2qzx_A 205 RGRNVDAN------TNVLLDSGTTISYFTRSIVRNILYAIGAQMKF-DSAGNKVYVADC-----K---TSGTIDFQFGNN 269 (342)
T ss_dssp TTEEEEEE------EEEEECTTCSSEEECHHHHHHHHHHHTCEEEE-CTTSCEEEEECT-----T---CCCEEEEEETTT
T ss_pred CCEecCCC------cCEEEeCCCCCEEcCHHHHHHHHHHhCCeeee-ccCCCcEEEEEC-----C---CCCcEEEEECCC
Confidence 99987543 35999999999999999999999999876432 111111122345 2 289999999778
Q ss_pred cEEEEcCCceEEEc-----CCCeEEEEEEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCCCC
Q 011556 422 VEVSIEGSAILIGS-----SPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGCS 483 (483)
Q Consensus 422 ~~~~l~~~~~~~~~-----~~~~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 483 (483)
++++|++++|+++. .....|++..... +.||||++|||++|+|||++++|||||+++|+
T Consensus 270 ~~~~i~~~~~~~~~~~~~~~~~~~C~~~i~~~---~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~ 333 (342)
T 2qzx_A 270 LKISVPVSEFLFQTYYTSGKPFPKCEVRIRES---EDNILGDNFLRSAYVVYNLDDKKISMAPVKYT 333 (342)
T ss_dssp EEEEEEGGGGEECCBCTTSCBCSSEEESEEEC---SSCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred cEEEEcHHHhcccccccCCCCCCccEEEEecC---CCcEeChHhhhcEEEEEECCCCEEEEEeeCCC
Confidence 99999999999874 2245799544332 35999999999999999999999999999995
No 13
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=100.00 E-value=1.5e-56 Score=451.89 Aligned_cols=302 Identities=26% Similarity=0.403 Sum_probs=249.5
Q ss_pred cCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCC
Q 011556 133 VATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQC 212 (483)
Q Consensus 133 ~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C 212 (483)
..+.+|+++|.||||+|++.|+|||||+++||+|.+|.. |..+.++.|||++|+||+.++|
T Consensus 12 ~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~-~~~~~~~~y~~~~SsT~~~~~~------------------ 72 (329)
T 3c9x_A 12 SADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPK-SSATGHAIYTPSKSSTSKKVSG------------------ 72 (329)
T ss_dssp TTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCH-HHHTTSCCBCGGGCTTCEECTT------------------
T ss_pred CCCCEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCCc-cccCCCCcCCcccCcCceEcCC------------------
Confidence 467899999999999999999999999999999999954 6656668999999999998642
Q ss_pred CCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCCc---cCcceEeecCCCCCchh---------hh
Q 011556 213 AGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLY---GQAAGLLGLGQDSISLV---------SQ 280 (483)
Q Consensus 213 ~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~~---~~~~GilGLg~~~~Sl~---------sQ 280 (483)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||++...+.+ ...+||||||++.++.+ .|
T Consensus 73 ----~~~~i~Yg~Gs~~~G~~~~D~v~ig~~-~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~ 147 (329)
T 3c9x_A 73 ----ASWSISYGDGSSSSGDVYTDKVTIGGF-SVNTQGVESATRVSTEFVQDTVISGLVGLAFDSGNQVRPHPQKTWFSN 147 (329)
T ss_dssp ----CBEEEECTTSCEEEEEEEEEEEEETTE-EEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHH
T ss_pred ----CeEEEEeCCCCcEEEEEEEEEEEECCE-EEcceEEEEEEecCccccccCCCceeEEeCcccccccCCCCCCCHHHH
Confidence 699999999988999999999999984 89999999999876643 37899999999876643 33
Q ss_pred hcccc-CceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEE
Q 011556 281 TSRKY-KKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAI 359 (483)
Q Consensus 281 ~~~~~-~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~i 359 (483)
+.... +++||+||.+. ..|.|+|||+|++++.+++.|+|+... ..+|.|.|++|+|+++.+. ... .++|
T Consensus 148 l~~~i~~~~FS~~l~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~~v~l~~i~v~~~~~~--~~~---~~ai 217 (329)
T 3c9x_A 148 AASSLAEPLFTADLRHG--QNGSYNFGYIDTSVAKGPVAYTPVDNS---QGFWEFTASGYSVGGGKLN--RNS---IDGI 217 (329)
T ss_dssp HHTTSSSSEEEEECCSS--SCEEEEESSCCGGGCSSCEEEEECBCT---TSSCEEEECCEEETTCCCC--SCC---EEEE
T ss_pred HHHhcCCCEEEEEecCC--CCcEEEEeCcChhhcccceEEEEccCC---CceEEEEEeeEEECCEecc--CCC---ceEE
Confidence 33222 68999999863 479999999999999999999999852 5789999999999998764 222 4599
Q ss_pred EcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEEcC--C
Q 011556 360 IDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSS--P 437 (483)
Q Consensus 360 iDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~--~ 437 (483)
|||||++++||+++|++|.+++.+.. +....+. +..+|+ ..+|+|+|+| +|++++||+++|++... .
T Consensus 218 iDSGTt~~~lp~~~~~~i~~~i~~a~--~~~~~~~-~~~~C~-------~~~P~i~f~f-~g~~~~ip~~~~~~~~~~~~ 286 (329)
T 3c9x_A 218 ADTGTTLLLLDDNVVDAYYANVQSAQ--YDNQQEG-VVFDCD-------EDLPSFSFGV-GSSTITIPGDLLNLTPLEEG 286 (329)
T ss_dssp ECTTCCSEEECHHHHHHHHTTCTTCE--EETTTTE-EEEETT-------CCCCCEEEEE-TTEEEEECGGGGEEEESSTT
T ss_pred EECCCCcEeCCHHHHHHHHHhCCCcE--EcCCCCE-EEEECC-------CCCCcEEEEE-CCEEEEECHHHeeeeccCCC
Confidence 99999999999999999998884431 1111111 223564 3689999999 68999999999998753 2
Q ss_pred CeEEEE-EEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeC
Q 011556 438 KQICLA-FAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPK 480 (483)
Q Consensus 438 ~~~Cl~-~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~ 480 (483)
...|++ |.+. +..+.||||++|||++|+|||++++|||||+.
T Consensus 287 ~~~C~~~i~~~-~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~ 329 (329)
T 3c9x_A 287 SSTCFGGLQSS-SGIGINIFGDVALKAALVVFDLGNERLGWAQK 329 (329)
T ss_dssp CSEEEESEEEC-TTTTSEEECHHHHTTEEEEEETTTTEEEEEEC
T ss_pred CCeEEEEEEcC-CCCCcEEEChHHhccEEEEEECCCCEEeEecC
Confidence 478996 6654 34568999999999999999999999999984
No 14
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=100.00 E-value=2.4e-56 Score=450.41 Aligned_cols=300 Identities=25% Similarity=0.374 Sum_probs=247.8
Q ss_pred CcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCC
Q 011556 134 ATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCA 213 (483)
Q Consensus 134 ~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~ 213 (483)
.+.+|+++|.||||+|++.|+|||||+++||+|.+|.. |.. .++.|||++|+||+.++|
T Consensus 13 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~-~~~-~~~~y~~~~SsT~~~~~~------------------- 71 (329)
T 1oew_A 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTA-SEV-XQTIYTPSKSTTAKLLSG------------------- 71 (329)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCG-GGC--CCCBCGGGCTTCEEEEE-------------------
T ss_pred CCCEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCCc-ccc-ccCccCCccCccceecCC-------------------
Confidence 57899999999999999999999999999999999954 544 558999999999999742
Q ss_pred CCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCCc---cCcceEeecCCCCCch---------hhhh
Q 011556 214 GSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLY---GQAAGLLGLGQDSISL---------VSQT 281 (483)
Q Consensus 214 ~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~~---~~~~GilGLg~~~~Sl---------~sQ~ 281 (483)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||++...+.+ ...+||||||++.++. ..|+
T Consensus 72 ---~~~~i~Yg~Gs~~~G~~~~D~v~~g~~-~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l 147 (329)
T 1oew_A 72 ---ATWSISYGDGSSSSGDVYTDTVSVGGL-TVTGQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNA 147 (329)
T ss_dssp ---EEEEEECTTSCEEEEEEEEEEEEETTE-EEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHH
T ss_pred ---CeEEEEeCCCCcEEEEEEEEEEEECCE-EEeeeEEEEEEecCccccccCCCceEEEeccccccccCcCCCCCHHHHH
Confidence 799999999988899999999999984 89999999999876643 3689999999987654 3344
Q ss_pred cccc-CceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEEE
Q 011556 282 SRKY-KKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAII 360 (483)
Q Consensus 282 ~~~~-~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~ii 360 (483)
.... +++||+||.+. ..|.|+|||+|++++.+++.|+|+... ..+|.|.|++|+|+++.+. ... .++||
T Consensus 148 ~~~i~~~~FS~~L~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~~v~l~~i~v~~~~~~--~~~---~~aii 217 (329)
T 1oew_A 148 KASLDSPVFTADLGYH--APGTYNFGFIDTTAYTGSITYTAVSTK---QGFWEWTSTGYAVGSGTFK--STS---IDGIA 217 (329)
T ss_dssp TTTSSSSEEEEECCSS--SCEEEEESCCCTTSSSSCCEEEECBCT---TSSCEEEEEEEEETTSCCE--EEE---EEEEE
T ss_pred HHhccCcEEEEEccCC--CCeEEEEeccChHhcccceEEEEccCC---CceEEEEEeeEEECCeecc--CCC---ceEEE
Confidence 3322 68999999863 479999999999999999999999852 5789999999999998764 122 45999
Q ss_pred cccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEEc-C-CC
Q 011556 361 DSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGS-S-PK 438 (483)
Q Consensus 361 DSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~-~-~~ 438 (483)
||||++++||+++|++|++++.+.. +....+. +..+|+ ..+|+|+|+| ||++++||+++|++.. . ..
T Consensus 218 DSGTt~~~lP~~~~~~l~~~i~~a~--~~~~~g~-~~~~C~-------~~~P~i~f~f-gg~~~~ip~~~~~~~~~~~~~ 286 (329)
T 1oew_A 218 DTGTTLLYLPATVVSAYWAQVSGAK--SSSSVGG-YVFPCS-------ATLPSFTFGV-GSARIVIPGDYIDFGPISTGS 286 (329)
T ss_dssp CTTCCSEEECHHHHHHHHTTSTTCE--EETTTTE-EEEETT-------CCCCCEEEEE-TTEEEEECHHHHEEEESSTTC
T ss_pred eCCCCCEECCHHHHHHHHHhCCCcE--EcCCCCE-EEEECC-------CCCCcEEEEE-CCEEEEECHHHeeeeecCCCC
Confidence 9999999999999999999884431 1111111 223564 3689999999 7999999999999875 2 34
Q ss_pred eEEEE-EEeCCCCCCceEecHhhhcceEEEEEC-CCCEEEEeeC
Q 011556 439 QICLA-FAGNSDDSDVAIIGNVQQKTLEVVYDV-AQRRVGFAPK 480 (483)
Q Consensus 439 ~~Cl~-~~~~~~~~~~~IlG~~fl~~~~vvfD~-~~~rIGFa~~ 480 (483)
..|++ |.+. +..+.||||++|||++|+|||+ +++|||||++
T Consensus 287 ~~C~~~i~~~-~~~~~~iLG~~fl~~~y~vfD~~~~~riGfA~~ 329 (329)
T 1oew_A 287 SSCFGGIQSS-AGIGINIFGDVALKAAFVVFNGATTPTLGFASK 329 (329)
T ss_dssp SEEEESEEES-TTTSSEEECHHHHTTEEEEEECSSSCEEEEEEC
T ss_pred CeEEEEEEeC-CCCCceEEChHHhcCEEEEEECCCCceEEEecC
Confidence 78996 5554 3456899999999999999999 9999999984
No 15
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=100.00 E-value=6.5e-56 Score=448.97 Aligned_cols=304 Identities=21% Similarity=0.372 Sum_probs=255.2
Q ss_pred eeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEe-----CCCccccccCCCCCCCCCCCCCccceecCCCc
Q 011556 123 TTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQ-----CEPCLRFCYQQKEPIYDPSASRTYANVSCSSA 197 (483)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~-----~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~ 197 (483)
+.+|+... +.+|+++|.||||+|++.|+|||||+++||+ |.+|. .|..+ +.|||++|+||+...
T Consensus 3 i~~~l~~~----~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~-~C~~~--~~y~~~~SsT~~~~~---- 71 (339)
T 3fv3_A 3 ISLSLINE----GPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGV-DCKSS--GTFTPSSSSSYKNLG---- 71 (339)
T ss_dssp EEEEEEEC----SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTC-CTTTT--CCBCGGGCTTCEEEE----
T ss_pred eeeEEEcC----CCEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCC-CCCCC--CcCCCccCcceeeCC----
Confidence 56777643 5789999999999999999999999999998 54443 38754 899999999999986
Q ss_pred cccCccCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCCccCcceEeecCCCCCc-
Q 011556 198 ICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLYGQAAGLLGLGQDSIS- 276 (483)
Q Consensus 198 ~C~~~~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~~~~~~GilGLg~~~~S- 276 (483)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||++...+ .+||||||++..+
T Consensus 72 -------------------~~~~i~Yg~gs~~~G~~~~D~v~~g~~-~v~~~~fg~~~~~~~----~~GilGLg~~~~~~ 127 (339)
T 3fv3_A 72 -------------------AAFTIRYGDGSTSQGTWGKDTVTINGV-SITGQQIADVTQTSV----DQGILGIGYTSNEA 127 (339)
T ss_dssp -------------------EEEEEECTTSCEEEEEEEEEEEEETTE-EEEEEEEEEEEEESS----SSCEEECSCGGGCC
T ss_pred -------------------ceEEEEECCCceEEEEEEEEEEEECCE-EECceEEEEEEecCC----CceeEEecCccccc
Confidence 799999999988999999999999984 899999999998764 6899999998754
Q ss_pred ---------------hhhhhccc---cCceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeE
Q 011556 277 ---------------LVSQTSRK---YKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIG 338 (483)
Q Consensus 277 ---------------l~sQ~~~~---~~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~g 338 (483)
++.|+..+ .+++||+||.+.....|.|+|||+|++++.+++.|+|+.. ..+|.|.|++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~L~~~g~i~~~~fsl~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~ 203 (339)
T 3fv3_A 128 VYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAETGTIIFGGVDNAKYSGKLVAEQVTS----SQALTISLAS 203 (339)
T ss_dssp CBCTTSCBCSCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEEBCC----SSSCEEEEEE
T ss_pred cccccccccCccCCcHHHHHHHCCCCCCceEEEEECCCCCCCeEEEEeeechHHeecceEEEeccc----CccEEEEEEE
Confidence 45555543 1689999999876668999999999999999999999988 5689999999
Q ss_pred EEECceecccCCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEE
Q 011556 339 LSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFF 418 (483)
Q Consensus 339 isVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f 418 (483)
|+|+++.+..+ ..+||||||++++||+++|++|++++++.........+ .+..+|+ . ..+|+|+|+|
T Consensus 204 i~v~g~~~~~~------~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~~~~~-~~~~~C~-----~-~~~p~i~f~f 270 (339)
T 3fv3_A 204 VNLKGSSFSFG------DGALLDSGTTLTYFPSDFAAQLADKAGARLVQVARDQY-LYFIDCN-----T-DTSGTTVFNF 270 (339)
T ss_dssp EEESSCEEEEE------EEEEECTTBSSEEECHHHHHHHHHHHTCEEEEEETTEE-EEEECTT-----C-CCCSEEEEEE
T ss_pred EEECCEeecCC------ccEEEeCCCCCEecCHHHHHHHHHHcCCEEccccccCc-eEEEecC-----C-CCCCcEEEEE
Confidence 99999987643 45999999999999999999999999875321101111 1233564 2 4689999999
Q ss_pred cCCcEEEEcCCceEEEcCCCeEEE-EEEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCCCC
Q 011556 419 NRGVEVSIEGSAILIGSSPKQICL-AFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGCS 483 (483)
Q Consensus 419 ~gg~~~~l~~~~~~~~~~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 483 (483)
.+|++++|++++|+++.. ...|+ +|.+ .+.||||++|||++|+|||++++|||||+++|+
T Consensus 271 ~~g~~~~v~~~~~~~~~~-~~~C~~~i~~----~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~ 331 (339)
T 3fv3_A 271 GNGAKITVPNTEYVYQNG-DGTCLWGIQP----SDDTILGDNFLRHAYLLYNLDANTISIAQVKYT 331 (339)
T ss_dssp TTSCEEEEEGGGGEEECS-SSCEEESEEE----CSSCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred CCCCEEEECHHHheeeCC-CCeEEEEEEe----CCcEEeChHHHhCEEEEEECCCCEEEEEecCCC
Confidence 768999999999998853 45685 7776 246999999999999999999999999999995
No 16
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=100.00 E-value=3.7e-56 Score=448.27 Aligned_cols=300 Identities=24% Similarity=0.403 Sum_probs=248.5
Q ss_pred ccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCC
Q 011556 132 VVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQ 211 (483)
Q Consensus 132 ~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~ 211 (483)
...+.+|+++|.||||+|++.|+|||||+++||+|.+|.. | .+.++.|||++|+||+...
T Consensus 11 ~~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~-c-~~~~~~y~~~~SsT~~~~~------------------ 70 (325)
T 2apr_A 11 YGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTN-C-GSGQTKYDPNQSSTYQADG------------------ 70 (325)
T ss_dssp ETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSS-C-CTTSCCBCGGGCTTCEEEE------------------
T ss_pred cCCCCEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCch-H-hcCCCCCCcccCCCeeeCC------------------
Confidence 3467899999999999999999999999999999999965 7 5566899999999999854
Q ss_pred CCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCCcc--CcceEeecCCCCCc-------hhhhhc
Q 011556 212 CAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLYG--QAAGLLGLGQDSIS-------LVSQTS 282 (483)
Q Consensus 212 C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~~~--~~~GilGLg~~~~S-------l~sQ~~ 282 (483)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||++...+.|. ..+||||||++.++ ++.|+.
T Consensus 71 -----~~~~i~Yg~Gs~~~G~~~~D~v~~g~~-~v~~~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~~~l~ 144 (325)
T 2apr_A 71 -----RTWSISYGDGSSASGILAKDNVNLGGL-LIKGQTIELAKREAASFASGPNDGLLGLGFDTITTVRGVKTPMDNLI 144 (325)
T ss_dssp -----EEEEEECTTSCEEEEEEEEEEEEETTE-EEEEEEEEEEEEECHHHHTSSCSEEEECSCGGGCSSTTCCCHHHHHH
T ss_pred -----CEEEEEECCCCCEEEEEEEEEEEECCE-EECcEEEEEEeccCcccccCCCceEEEeCCcccccccCCCCHHHHHH
Confidence 799999999988999999999999984 899999999998766443 48999999998765 344544
Q ss_pred cc---cCceEEEEcCCC-CCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcE
Q 011556 283 RK---YKKYFSYCLPSS-SSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGA 358 (483)
Q Consensus 283 ~~---~~~~FS~cL~~~-~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~ 358 (483)
.+ .+++||+||.+. ....|.|+|||+|++++.+++.|+|+... ..+|.|.+++|+||++ +. ... ..+
T Consensus 145 ~qg~i~~~~FS~~l~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~~~v~l~~i~vg~~-~~--~~~---~~~ 215 (325)
T 2apr_A 145 SQGLISRPIFGVYLGKAKNGGGGEYIFGGYDSTKFKGSLTTVPIDNS---RGWWGITVDRATVGTS-TV--ASS---FDG 215 (325)
T ss_dssp HTTSCSSSEEEEEECCGGGTCCEEEEETCCCGGGBCSCCEEEECBCT---TSSCEEEECEEEETTE-EE--ECC---EEE
T ss_pred hcCCCCCceEEEEecCCCCCCCCEEEEccCCchhccCceEEEEccCC---CCEEEEEEeEEEECCE-ec--CCC---ceE
Confidence 33 268999999763 34589999999999899999999999752 5789999999999993 32 222 459
Q ss_pred EEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEEcCCC
Q 011556 359 IIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPK 438 (483)
Q Consensus 359 iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~ 438 (483)
||||||++++||+++|+++.+++.+.+... + .+..+|+ . ..+|+|+|+|. |.+++||+++|+++.. .
T Consensus 216 iiDSGTs~~~lP~~~~~~~~~~~~~~~~~~----g-~~~~~C~-----~-~~~p~i~f~f~-g~~~~ip~~~~~~~~~-~ 282 (325)
T 2apr_A 216 ILDTGTTLLILPNNIAASVARAYGASDNGD----G-TYTISCD-----T-SAFKPLVFSIN-GASFQVSPDSLVFEEF-Q 282 (325)
T ss_dssp EECTTCSSEEEEHHHHHHHHHHHTCEECSS----S-CEEECSC-----G-GGCCCEEEEET-TEEEEECGGGGEEEEE-T
T ss_pred EEecCCccEECCHHHHHHHHHHHhcccCCC----C-eEEEECC-----C-CCCCcEEEEEC-CEEEEECHHHEEEcCC-C
Confidence 999999999999999999999998764321 1 1223464 2 34899999995 5699999999998754 6
Q ss_pred eEEEE-EEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCC
Q 011556 439 QICLA-FAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKG 481 (483)
Q Consensus 439 ~~Cl~-~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 481 (483)
..|++ |...+ .+.||||++|||++|+|||++++|||||+++
T Consensus 283 ~~C~~~i~~~~--~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 324 (325)
T 2apr_A 283 GQCIAGFGYGN--WGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324 (325)
T ss_dssp TEEEESEEEES--SSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred CeEEEEEEcCC--CCCEEECHHHhcceEEEEECCCCEEEEEecC
Confidence 78996 45442 5689999999999999999999999999874
No 17
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=100.00 E-value=5.2e-56 Score=447.94 Aligned_cols=307 Identities=26% Similarity=0.470 Sum_probs=254.6
Q ss_pred eeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCccccCc
Q 011556 124 TIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL-RFCYQQKEPIYDPSASRTYANVSCSSAICDSL 202 (483)
Q Consensus 124 ~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~-~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 202 (483)
.+|+. ..+.+|+++|.||||+|++.|+|||||+++||+|.+|. ..|..+ +.|||++|+||+...
T Consensus 4 ~~~l~----~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~--~~y~~~~SsT~~~~~--------- 68 (329)
T 1htr_B 4 YEPMA----YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSH--SRFNPSESSTYSTNG--------- 68 (329)
T ss_dssp CCGGG----GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTS--CCBCGGGCTTCEEEE---------
T ss_pred eeeeE----EcCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCCC--CcCCCccCCCeEECC---------
Confidence 35665 35789999999999999999999999999999999994 358764 899999999999875
Q ss_pred cCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCC-Cc--cCcceEeecCCCCCch--
Q 011556 203 ESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRG-LY--GQAAGLLGLGQDSISL-- 277 (483)
Q Consensus 203 ~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g-~~--~~~~GilGLg~~~~Sl-- 277 (483)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||++...+ .+ ...+||||||++.++.
T Consensus 69 --------------~~~~i~Yg~gs-~~G~~~~D~v~~g~-~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~ 132 (329)
T 1htr_B 69 --------------QTFSLQYGSGS-LTGFFGYDTLTVQS-IQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPALSVDE 132 (329)
T ss_dssp --------------EEEEEEETTEE-EEEEEEEEEEEETT-EEEEEEEEEEESSCSSGGGGGCSCCEEEECCCCSCCCTT
T ss_pred --------------cEEEEEeCCCC-eEEEEEeeeEEEcc-eEECceEEEEEEEccccccccCCCceEEecCCCcccccC
Confidence 79999999997 59999999999998 4899999999998766 23 3689999999998763
Q ss_pred ----hhhhccc---cCceEEEEcCCCCCC-CceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccC
Q 011556 278 ----VSQTSRK---YKKYFSYCLPSSSSS-TGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIP 349 (483)
Q Consensus 278 ----~sQ~~~~---~~~~FS~cL~~~~~~-~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~ 349 (483)
+.|+..+ .+++||+||.+.... .|.|+|||+|++++.+++.|+|+.. ..+|.|.|++|+|+++.+...
T Consensus 133 ~~~~~~~l~~qg~i~~~~Fs~~L~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~~~ 208 (329)
T 1htr_B 133 ATTAMQGMVQEGALTSPVFSVYLSNQQGSSGGAVVFGGVDSSLYTGQIYWAPVTQ----ELYWQIGIEEFLIGGQASGWC 208 (329)
T ss_dssp CCSHHHHHHHTTCSSSSEEEEEECSSCSSEEEEEEESSCCGGGEEEEEEEEEBCS----SSSCEEEECEEEETTEECCTT
T ss_pred CCCHHHHHHhcCCCCCCEEEEEEcCCCCCCCcEEEEcccCHHHcCCceEEEECCC----CceEEEEEeEEEECCceeeec
Confidence 3333332 279999999987544 7999999999988999999999987 679999999999999886411
Q ss_pred CcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCC
Q 011556 350 ISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGS 429 (483)
Q Consensus 350 ~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~ 429 (483)
... ..+||||||++++||+++|++|++++++.. . ..+ .+..+|+ ....+|+|+|+| +|++++|+++
T Consensus 209 ~~~---~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~---~-~~g-~~~~~C~-----~~~~~P~i~f~f-~g~~~~i~~~ 274 (329)
T 1htr_B 209 SEG---CQAIVDTGTSLLTVPQQYMSALLQATGAQE---D-EYG-QFLVNCN-----SIQNLPSLTFII-NGVEFPLPPS 274 (329)
T ss_dssp TTC---EEEEECTTCCSEEEEGGGHHHHHHHHTCEE---C-TTS-CEEECGG-----GGGGSCCEEEEE-TTEEEEECHH
T ss_pred CCC---ceEEEecCCccEECCHHHHHHHHHHhCCee---c-CCC-eEEEeCC-----CcccCCcEEEEE-CCEEEEECHH
Confidence 111 469999999999999999999999997652 1 112 1234565 345789999999 7899999999
Q ss_pred ceEEEcCCCeEEE-EEEeCC---CCCC-ceEecHhhhcceEEEEECCCCEEEEeeCC
Q 011556 430 AILIGSSPKQICL-AFAGNS---DDSD-VAIIGNVQQKTLEVVYDVAQRRVGFAPKG 481 (483)
Q Consensus 430 ~~~~~~~~~~~Cl-~~~~~~---~~~~-~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 481 (483)
+|+++.. ..|+ +|.+.+ ...+ .||||++|||++|+|||++++|||||+++
T Consensus 275 ~y~~~~~--g~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~ 329 (329)
T 1htr_B 275 SYILSNN--GYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 329 (329)
T ss_dssp HHEEECS--SCEEESEEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred HhcccCC--CEEEEEEEECCCCCCCCCceEEEChHHhccEEEEEECCCCEEEEEeCC
Confidence 9999865 3898 677653 1234 89999999999999999999999999874
No 18
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=100.00 E-value=3.1e-56 Score=447.81 Aligned_cols=300 Identities=24% Similarity=0.418 Sum_probs=252.1
Q ss_pred ccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCC
Q 011556 132 VVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL-RFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTP 210 (483)
Q Consensus 132 ~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~-~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~ 210 (483)
++.+.+|+++|+||||+|++.|+|||||+++||+|.+|. ..|..+ +.|||++|+||+...
T Consensus 7 n~~d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~--~~y~~~~SsT~~~~~----------------- 67 (320)
T 4aa9_A 7 SYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNH--HRFDPRKSSTFRNLG----------------- 67 (320)
T ss_dssp -CCCCCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTS--CCBCGGGCTTCEEEE-----------------
T ss_pred eccCCEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCCC--CCCCCCCCcCeEcCC-----------------
Confidence 456789999999999999999999999999999999994 357755 899999999999975
Q ss_pred CCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCC-Cc--cCcceEeecCCCCCc------hhhhh
Q 011556 211 QCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRG-LY--GQAAGLLGLGQDSIS------LVSQT 281 (483)
Q Consensus 211 ~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g-~~--~~~~GilGLg~~~~S------l~sQ~ 281 (483)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||++...+ .+ ...+||||||++.++ ++.|+
T Consensus 68 ------~~~~i~Yg~gs-~~G~~~~D~v~ig~-~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l 139 (320)
T 4aa9_A 68 ------KPLSIHYGTGS-MEGFLGYDTVTVSN-IVDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVPVFDNM 139 (320)
T ss_dssp ------EEEEEEETTEE-EEEEEEEEEEEETT-EEEEEEEEEEEEECCSHHHHSCCCSEEEECSCGGGSCTTCCCHHHHH
T ss_pred ------cEEEEEECCcE-EEEEEEEEEEEECC-EeecCeEEEEEEEcccccccccCcccEEecCcccccccCCCCHHHHH
Confidence 69999999997 89999999999998 4899999999998876 23 257999999998654 33444
Q ss_pred ccc---cCceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcE
Q 011556 282 SRK---YKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGA 358 (483)
Q Consensus 282 ~~~---~~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~ 358 (483)
..+ ..++||+||.+. ...|.|+|||+|++++.+++.|+|+.. ..+|.|.+++|+|+++.+..+.. ..+
T Consensus 140 ~~~g~i~~~~Fs~~l~~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~~~~~~~~~~----~~~ 210 (320)
T 4aa9_A 140 MDRHLVARDLFSVYMDRN-GQGSMLTLGAIDPSYYTGSLHWVPVTL----QQYWQFTVDSVTINGVAVACVGG----CQA 210 (320)
T ss_dssp HHTTCSSSSEEEEECCSS-SSCCEEEETCCCGGGEEEEEEEEECSS----BTTBEEEECEEEETTEEEESTTC----EEE
T ss_pred HhCCCCCCceEEEEeCCC-CCCeEEEEcccCHHHccCceEEEEccc----CCceEEEEeEEEECCEEeccCCC----cEE
Confidence 332 278999999985 458999999999999999999999986 67999999999999998765432 469
Q ss_pred EEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEEcCCC
Q 011556 359 IIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPK 438 (483)
Q Consensus 359 iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~ 438 (483)
||||||++++||+++|++|.+++++... ..+ .|.++|.....+|+|+|+| +|++++|++++|+.+. .
T Consensus 211 iiDsGtt~~~lP~~~~~~i~~~~~~~~~----~~g------~~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~y~~~~--~ 277 (320)
T 4aa9_A 211 ILDTGTSVLFGPSSDILKIQMAIGATEN----RYG------EFDVNCGNLRSMPTVVFEI-NGRDYPLSPSAYTSKD--Q 277 (320)
T ss_dssp EECTTCSSEEEEHHHHHHHHHHTTCEEC----TTS------CEEECGGGGGGCCCEEEEE-TTEEEEECHHHHEEEE--T
T ss_pred EEECCCCcEECCHHHHHHHHHHhCCccc----CCC------cEEEeCCCCCcCceEEEEE-CCEEEEECHHHhccCC--C
Confidence 9999999999999999999999966421 111 2334444556799999999 7899999999999763 5
Q ss_pred eEEE-EEEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCC
Q 011556 439 QICL-AFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKG 481 (483)
Q Consensus 439 ~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 481 (483)
..|+ +|... ...+.||||++|||++|+|||++++|||||+++
T Consensus 278 ~~C~~~i~~~-~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~a~ 320 (320)
T 4aa9_A 278 GFCTSGFQGD-NNSELWILGDVFIREYYSVFDRANNRVGLAKAI 320 (320)
T ss_dssp TEEEESEEEE-TTCCCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CeEEEEEEcC-CCCCcEEEChHHhcceEEEEECCCCEEEEEecC
Confidence 6898 57764 334679999999999999999999999999974
No 19
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=100.00 E-value=5.5e-56 Score=449.76 Aligned_cols=310 Identities=20% Similarity=0.367 Sum_probs=257.4
Q ss_pred CceeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc---ccccCCCCCCCCCCCCCccceecCCCc
Q 011556 121 DATTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL---RFCYQQKEPIYDPSASRTYANVSCSSA 197 (483)
Q Consensus 121 ~~~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~---~~C~~~~~~~fdps~SsT~~~~~C~s~ 197 (483)
....+|+.+ ..+.+|+++|.||||+|++.|+|||||+++||+|.+|. ..|..+ +.|||++|+||+...
T Consensus 6 ~~~~~~l~n---~~d~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~--~~y~~~~SsT~~~~~---- 76 (341)
T 3k1w_A 6 TTSSVILTN---YMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH--KLFDASDSSSYKHNG---- 76 (341)
T ss_dssp BCEEEEEEE---ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHHTS--CCBCGGGCTTCEEEE----
T ss_pred CCccccceE---ccCCEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcccCC--CCCCCCcCcCeeECC----
Confidence 456778864 45789999999999999999999999999999999995 258654 899999999999865
Q ss_pred cccCccCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCC-c--cCcceEeecCCCC
Q 011556 198 ICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGL-Y--GQAAGLLGLGQDS 274 (483)
Q Consensus 198 ~C~~~~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~-~--~~~~GilGLg~~~ 274 (483)
|.|.+.|++|+ +.|.+++|+|+|++. .+ ++.|||++...+. + ...+||||||++.
T Consensus 77 -------------------~~~~i~Yg~gs-~~G~~~~D~v~ig~~-~v-~~~fg~~~~~~~~~~~~~~~~GilGLg~~~ 134 (341)
T 3k1w_A 77 -------------------TELTLRYSTGT-VSGFLSQDIITVGGI-TV-TQMFGEVTEMPALPFMLAEFDGVVGMGFIE 134 (341)
T ss_dssp -------------------EEEEEEETTEE-EEEEEEEEEEEETTE-EE-EEEEEEEEECCHHHHTTCSSSEEEECSCGG
T ss_pred -------------------CEEEEEECCcE-EEEEEEEEEEEECCc-ee-eEEEEEEEEccccccccCCcceEEECCchh
Confidence 79999999997 899999999999985 78 9999999988753 2 3679999999987
Q ss_pred Cc------hhhhhccc---cCceEEEEcCCCC----CCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEE
Q 011556 275 IS------LVSQTSRK---YKKYFSYCLPSSS----SSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSV 341 (483)
Q Consensus 275 ~S------l~sQ~~~~---~~~~FS~cL~~~~----~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisV 341 (483)
.+ ++.|+..+ ..++||+||.+.. ...|.|+|||+|++++.++++|+|+.. ..+|.|.+++|+|
T Consensus 135 ~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v 210 (341)
T 3k1w_A 135 QAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIK----TGVWQIQMKGVSV 210 (341)
T ss_dssp GCGGGCCCHHHHHHHHTCBSSSEEEEEECCCC-----CCEEEEESSCCGGGEEEEEEEEECSS----TTSCEEEECCEEE
T ss_pred hcccCCCCHHHHHHHCCCCCCCEEEEEEeCCCCcCCCCCCEEEECccChHHccCceEEEecCC----CCEEEEEEeEEEE
Confidence 65 33333322 2799999999864 248999999999999999999999986 6799999999999
Q ss_pred CceecccCCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCC
Q 011556 342 GGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRG 421 (483)
Q Consensus 342 gg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg 421 (483)
+++.+..+.. ..+||||||++++||+++|++|++++++.. .. .+ |.++|.....+|+|+|+| +|
T Consensus 211 ~~~~~~~~~~----~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~---~~-~g-------~~~~C~~~~~~p~i~f~f-~g 274 (341)
T 3k1w_A 211 GSSTLLCEDG----CLALVDTGASYISGSTSSIEKLMEALGAKK---RL-FD-------YVVKCNEGPTLPDISFHL-GG 274 (341)
T ss_dssp TTEEEECTTC----EEEEECTTCSSEEECHHHHHHHHHHHTCEE---CS-SC-------EEEEGGGGGGCCCEEEEE-TT
T ss_pred CCEEeecCCC----CEEEEECCCChhcCCHHHHHHHHHHcCCee---cC-CC-------eEEeCCCCCcCCcEEEEE-CC
Confidence 9997544332 469999999999999999999999997652 11 11 333444456799999999 68
Q ss_pred cEEEEcCCceEEEcC--CCeEEE-EEEeCC---CCCCceEecHhhhcceEEEEECCCCEEEEeeCC
Q 011556 422 VEVSIEGSAILIGSS--PKQICL-AFAGNS---DDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKG 481 (483)
Q Consensus 422 ~~~~l~~~~~~~~~~--~~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 481 (483)
++++|++++|+++.. ....|+ +|...+ ...+.||||++|||++|+|||++++|||||+++
T Consensus 275 ~~~~l~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a~ 340 (341)
T 3k1w_A 275 KEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 340 (341)
T ss_dssp EEEEECHHHHBCCSCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEECHHHheeEccCCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEEEECC
Confidence 999999999998753 367899 677642 235689999999999999999999999999874
No 20
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=100.00 E-value=9.8e-56 Score=453.35 Aligned_cols=304 Identities=24% Similarity=0.392 Sum_probs=255.2
Q ss_pred eeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCccccC
Q 011556 123 TTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL-RFCYQQKEPIYDPSASRTYANVSCSSAICDS 201 (483)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~-~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~ 201 (483)
..+|+.. ..+.+|+++|.||||+|++.|+|||||+++||+|.+|. ..|..+ +.|||++|+||+...
T Consensus 52 ~~~pl~~---~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~--~~y~~~~SsT~~~~~-------- 118 (375)
T 1miq_A 52 DVIELDD---VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIK--NLYDSSKSKSYEKDG-------- 118 (375)
T ss_dssp BCCCGGG---TBCEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGGS--CCBCGGGCTTCEEEE--------
T ss_pred ceEEccc---CCCCEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCCcccccCC--CcCCCccCCceEECC--------
Confidence 4577763 46789999999999999999999999999999999994 468765 899999999999875
Q ss_pred ccCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEe----cCCCc--cCcceEeecCCCCC
Q 011556 202 LESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQY----NRGLY--GQAAGLLGLGQDSI 275 (483)
Q Consensus 202 ~~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~----~~g~~--~~~~GilGLg~~~~ 275 (483)
|.|.+.|++|+ +.|.+++|+|+|++. .+++ .|||++. .. .| ...+||||||++.+
T Consensus 119 ---------------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~-~v~~-~Fg~~~~~~~~~~-~f~~~~~dGilGLg~~~~ 179 (375)
T 1miq_A 119 ---------------TKVDITYGSGT-VKGFFSKDLVTLGHL-SMPY-KFIEVTDTDDLEP-IYSSVEFDGILGLGWKDL 179 (375)
T ss_dssp ---------------EEEEEEETTEE-EEEEEEEEEEEETTE-EEEE-EEEEEEECGGGTT-HHHHSCCCEEEECSSCCT
T ss_pred ---------------cEEEEEeCCCe-EEEEEEEEEEEEcCc-eECc-EEEEEEecccccc-ccccCCCceEEeCCCCcc
Confidence 79999999997 899999999999984 8899 9999998 54 33 36899999999987
Q ss_pred ch------hhhhccc---cCceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceec
Q 011556 276 SL------VSQTSRK---YKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKL 346 (483)
Q Consensus 276 Sl------~sQ~~~~---~~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l 346 (483)
+. +.|+..+ ..++||+||++.+...|.|+|||+|++++.+++.|+|+.. ..+|.|.|+ |+||++.+
T Consensus 180 s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~-i~v~g~~~ 254 (375)
T 1miq_A 180 SIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDLD-VHFGKQTM 254 (375)
T ss_dssp TCSSCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEEBSS----SSSSEEEEE-EEETTEEE
T ss_pred cccCCCCHHHHHHhccCcCCCEEEEEecCCCCCCeEEEEcccCHHHcCCceEEEecCC----CceEEEEEE-EEECCEEc
Confidence 64 2333322 2799999999865468999999999988999999999986 679999999 99999887
Q ss_pred ccCCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEE
Q 011556 347 PIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSI 426 (483)
Q Consensus 347 ~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l 426 (483)
.. ..+||||||++++||+++|++|.+++++. ++...+. +..+|+. ..+|+|+|+| +|++++|
T Consensus 255 ----~~---~~aiiDSGTs~~~lP~~~~~~l~~~~~~~---~~~~~g~-~~~~C~~------~~~P~i~f~f-~g~~~~l 316 (375)
T 1miq_A 255 ----EK---ANVIVDSGTTTITAPSEFLNKFFANLNVI---KVPFLPF-YVTTCDN------KEMPTLEFKS-ANNTYTL 316 (375)
T ss_dssp ----EE---EEEEECTTBSSEEECHHHHHHHHHHHTCE---ECTTSSC-EEEETTC------TTCCCEEEEC-SSCEEEE
T ss_pred ----cc---ceEEecCCCccEEcCHHHHHHHHHHhCCc---ccCCCCe-EEEECCC------CCCCcEEEEE-CCEEEEE
Confidence 11 46999999999999999999999999764 2222222 3445753 5789999999 7899999
Q ss_pred cCCceEEEcC--CCeEEE-EEEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCC
Q 011556 427 EGSAILIGSS--PKQICL-AFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKG 481 (483)
Q Consensus 427 ~~~~~~~~~~--~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 481 (483)
++++|+++.. +...|+ +|.+.+...+.||||++|||++|+|||++++|||||+++
T Consensus 317 ~~~~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfA~~~ 374 (375)
T 1miq_A 317 EPEYYMNPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIAK 374 (375)
T ss_dssp CGGGSEEESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred CHHHhEeeccCCCCCeEEEEEEECCCCCCcEEECHHHhccEEEEEECCCCEEEEEEcC
Confidence 9999999864 346898 788764323689999999999999999999999999864
No 21
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=100.00 E-value=3e-55 Score=451.42 Aligned_cols=311 Identities=23% Similarity=0.364 Sum_probs=252.2
Q ss_pred cceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCCC
Q 011556 135 TGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAG 214 (483)
Q Consensus 135 ~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~ 214 (483)
+..|+++|.||||+|++.|+|||||+++||+|.+|.. | ++.|||++|+||+...
T Consensus 12 ~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~-~----~~~f~~~~SsT~~~~~--------------------- 65 (383)
T 2ewy_A 12 GRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSY-I----DTYFDTERSSTYRSKG--------------------- 65 (383)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCBTT-B----SCCCCGGGCTTCEEEE---------------------
T ss_pred CCcEEEEEEecCCCceEEEEEecCCCceEEecCCCCc-c----ccCcccccCccceeCC---------------------
Confidence 4679999999999999999999999999999999843 5 3789999999999975
Q ss_pred CCceeeEEcCCCCeEEEEEEEEEEEecCCCccC-ceEEEEEEecCCCc---cCcceEeecCCCCCc------------hh
Q 011556 215 STCVYGIEYGDNSFSAGFFAKETLTLTSSDVFP-NFLFGCGQYNRGLY---GQAAGLLGLGQDSIS------------LV 278 (483)
Q Consensus 215 ~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~-~~~FG~~~~~~g~~---~~~~GilGLg~~~~S------------l~ 278 (483)
|.|.+.|++|+ ++|.+++|+|+|++..... .+.|+|..+..+.| ...+||||||++.++ ++
T Consensus 66 --~~~~i~Yg~Gs-~~G~~~~Dtv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~~~l~ 142 (383)
T 2ewy_A 66 --FDVTVKYTQGS-WTGFVGEDLVTIPKGFNTSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFDSLV 142 (383)
T ss_dssp --EEEEEECSSCE-EEEEEEEEEEEETTTEEEEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHH
T ss_pred --ceEEEEECCcE-EEEEEEEEEEEECCCccceeEEEEEEEEeecceeeccCcCceEEecCchhcccccccccCHHHHHH
Confidence 69999999997 6899999999998642222 36788887666654 267999999998764 45
Q ss_pred hhhccccCceEEEEcCCC-------CCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCc
Q 011556 279 SQTSRKYKKYFSYCLPSS-------SSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPIS 351 (483)
Q Consensus 279 sQ~~~~~~~~FS~cL~~~-------~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~ 351 (483)
+|... +++||+||... ....|.|+|||+|++++.+++.|+|+.. ..+|.|.|++|+|+++.+.++..
T Consensus 143 ~q~~i--~~~FS~~l~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~g~~~~~~~~ 216 (383)
T 2ewy_A 143 TQANI--PNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKE----EWYYQIEILKLEIGGQSLNLDCR 216 (383)
T ss_dssp HHHTC--CSCEEEEECCC---------CCEEEEETSCCGGGCCSCEEEEECSS----BTTBBCCEEEEEETTEECCCCTT
T ss_pred HccCC--CcceEEEeeccccccccCCCCCeEEEeCccchhhccCccEEEecCC----CceEEEEEEEEEECCEEcccccc
Confidence 56554 58999999631 2358999999999989999999999987 57999999999999999887665
Q ss_pred ccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCC--CCCCccceecCCCcccccCeEEEEEcCC-----cEE
Q 011556 352 VFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPA--LSILDTCYDFSNYTSISVPVISFFFNRG-----VEV 424 (483)
Q Consensus 352 ~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~--~~~~~~C~~~~~~~~~~~P~i~~~f~gg-----~~~ 424 (483)
.|....+||||||++++||+++|++|++++.+.+.......+ .....+|+.........+|+|+|+|.|+ .++
T Consensus 217 ~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~ 296 (383)
T 2ewy_A 217 EYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIPEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRI 296 (383)
T ss_dssp TTTSSCEEECTTCSSEEEEHHHHHHHHHHHHHTTCSSCCCHHHHHTSEEEEECSSSCGGGGSCCEEEEEECSSTTEEEEE
T ss_pred ccCCccEEEEcCCccccCCHHHHHHHHHHHhhhcccccCccccccccccccccCCcccHhhCCcEEEEECCCCCCceEEE
Confidence 554467999999999999999999999999987432111111 1234679876544445799999999654 379
Q ss_pred EEcCCceEEEcC---CCeEEEEE--EeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCCCC
Q 011556 425 SIEGSAILIGSS---PKQICLAF--AGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGCS 483 (483)
Q Consensus 425 ~l~~~~~~~~~~---~~~~Cl~~--~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 483 (483)
+|++++|+.+.. .+..|++| .+. .+.||||++|||++|+|||++++|||||+++|+
T Consensus 297 ~l~~~~yi~~~~~~~~~~~C~~~~i~~~---~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 357 (383)
T 2ewy_A 297 TILPQLYIQPMMGAGLNYECYRFGISPS---TNALVIGATVMEGFYVIFDRAQKRVGFAASPCA 357 (383)
T ss_dssp EECHHHHEEEECCCTTCSEEEEESEEEE---SSCEEECHHHHTTEEEEEETTTTEEEEEECTTC
T ss_pred EEChHHheeecccCCCCceeEEEEecCC---CCcEEEChHHhCCeeEEEECCCCeEEEEeccCC
Confidence 999999998763 35689864 332 347999999999999999999999999999994
No 22
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=100.00 E-value=3.5e-55 Score=444.10 Aligned_cols=305 Identities=22% Similarity=0.366 Sum_probs=250.7
Q ss_pred eeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCC--cc--------ccccCCCCCCCCCCCCCcccee
Q 011556 123 TTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEP--CL--------RFCYQQKEPIYDPSASRTYANV 192 (483)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~--C~--------~~C~~~~~~~fdps~SsT~~~~ 192 (483)
+.+|+.. ++++|+++|.||||+|++.|+|||||+++||+|.. |. ..|.. ++.|||++|+||+..
T Consensus 3 v~~~l~~----~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~--~~~y~~~~SsT~~~~ 76 (342)
T 3pvk_A 3 VPVTLHN----EQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQ--KGTYDPSGSSASQDL 76 (342)
T ss_dssp EEEEEEE----CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGT--TCCBCGGGCTTCEEE
T ss_pred cceEEec----CCcEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCCC--CCcCCCccCcceeec
Confidence 4556653 36899999999999999999999999999998653 52 34754 489999999999998
Q ss_pred cCCCccccCccCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCCccCcceEeecCC
Q 011556 193 SCSSAICDSLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLYGQAAGLLGLGQ 272 (483)
Q Consensus 193 ~C~s~~C~~~~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~~~~~~GilGLg~ 272 (483)
. |.|.+.|++|+.+.|.+++|+|+|++ ..++++.|||++... ..+||||||+
T Consensus 77 ~-----------------------~~~~i~Yg~gs~~~G~~~~D~v~ig~-~~v~~~~fg~~~~~~----~~~GilGLg~ 128 (342)
T 3pvk_A 77 N-----------------------TPFKIGYGDGSSSQGTLYKDTVGFGG-VSIKNQVLADVDSTS----IDQGILGVGY 128 (342)
T ss_dssp E-----------------------EEEEEECSSSCEEEEEEEEEEEEETT-EEEEEEEEEEEEEES----SSSCEEECSC
T ss_pred C-----------------------CeEEEEecCCCeEEEEEEEEEEEECC-EEecceEEEEEEccC----CCccEEEecC
Confidence 6 79999999998899999999999998 489999999999875 5799999999
Q ss_pred CCC-------chhhhhccc---cCceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEEC
Q 011556 273 DSI-------SLVSQTSRK---YKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVG 342 (483)
Q Consensus 273 ~~~-------Sl~sQ~~~~---~~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVg 342 (483)
+.+ +++.|+..+ .+++||+||.+.....|.|+|||+|++++.+++.|+|+.. ..+|.|.|++|+|+
T Consensus 129 ~~~~~~~~~~~~~~~L~~qg~i~~~~fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~ 204 (342)
T 3pvk_A 129 KTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQIIFGGVDNAKYSGSLIALPVTS----DRELRISLGSVEVS 204 (342)
T ss_dssp GGGCSSCSSCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEECCC----SSSCEEEEEEEEET
T ss_pred ccccccccCCcHHHHHHhcCCCCCceEEEEeCCCCCCCcEEEECccCccceeeeeEEeecCc----cceEEEEEeEEEEC
Confidence 873 455665543 2689999998866568999999999999999999999987 45899999999999
Q ss_pred ceecccCCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCc
Q 011556 343 GKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGV 422 (483)
Q Consensus 343 g~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~ 422 (483)
++.+..+. ..+||||||++++||+++|++|.+++++...... .....+..+| . .+|+|+|+|.+|+
T Consensus 205 g~~~~~~~-----~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~-~~~~~~~~~C-----~---~~p~i~f~f~~g~ 270 (342)
T 3pvk_A 205 GKTINTDN-----VDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDS-NGNSFYEVDC-----N---LSGDVVFNFSKNA 270 (342)
T ss_dssp TEEEEEEE-----EEEEECTTCSSEEECHHHHHHHHHHTTCEEEECT-TSCEEEEECS-----C---CCSEEEEEESTTC
T ss_pred CEEecCCC-----ceEEEeCCCCCeecCHHHHHHHHHHcCCeecccC-CCceEEEEec-----C---CCCceEEEECCCC
Confidence 99886542 3599999999999999999999999987643211 1111123345 3 3599999997689
Q ss_pred EEEEcCCceEEEcC--C---CeEEEE-EEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCCCC
Q 011556 423 EVSIEGSAILIGSS--P---KQICLA-FAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGCS 483 (483)
Q Consensus 423 ~~~l~~~~~~~~~~--~---~~~Cl~-~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 483 (483)
+++||+++|+++.. . ...|+. +.+. +.||||++|||++|+|||++++|||||+++|+
T Consensus 271 ~~~vp~~~~~~~~~~~~g~~~~~C~~~i~~~----~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~ 333 (342)
T 3pvk_A 271 KISVPASEFAASLQGDDGQPYDKCQLLFDVN----DANILGDNFLRSAYIVYDLDDNEISLAQVKYT 333 (342)
T ss_dssp EEEEEGGGGEEC----------CEEESEEEC----TTCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred EEEEcHHHheeeccccCCCcCCeeEEEEeeC----CCeEeCHHHHhcEEEEEECCCCEEEEEecCCC
Confidence 99999999998731 2 267984 5442 57999999999999999999999999999995
No 23
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=100.00 E-value=1.3e-55 Score=460.74 Aligned_cols=305 Identities=21% Similarity=0.353 Sum_probs=253.7
Q ss_pred eeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCccccC
Q 011556 123 TTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL-RFCYQQKEPIYDPSASRTYANVSCSSAICDS 201 (483)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~-~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~ 201 (483)
..+|+. +..+.+|+++|.||||+|++.|+|||||+++||+|.+|. ..|..+ +.|||++|+||+...
T Consensus 128 ~~~~L~---n~~~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~~--~~ydps~SsT~~~~~-------- 194 (453)
T 2bju_A 128 DNIELV---DFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTK--HLYDSSKSRTYEKDG-------- 194 (453)
T ss_dssp EEEEEE---EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGS--CCBCGGGCTTCEEEE--------
T ss_pred CceeeE---ecCCCEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCCC--CcCCCccCCceeECC--------
Confidence 457776 346789999999999999999999999999999999994 468754 899999999999875
Q ss_pred ccCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecC--CC-c--cCcceEeecCCCCCc
Q 011556 202 LESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNR--GL-Y--GQAAGLLGLGQDSIS 276 (483)
Q Consensus 202 ~~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~--g~-~--~~~~GilGLg~~~~S 276 (483)
|.|.+.|++|+ +.|.+++|+|+|++. .++ +.|||++... +. + ...+||||||++.++
T Consensus 195 ---------------~~~~i~YgdGs-~~G~~~~Dtv~ig~~-~v~-~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~~~~s 256 (453)
T 2bju_A 195 ---------------TKVEMNYVSGT-VSGFFSKDLVTVGNL-SLP-YKFIEVIDTNGFEPTYTASTFDGILGLGWKDLS 256 (453)
T ss_dssp ---------------EEEEEECSSSE-EEEEEEEEEEEETTE-EEE-EEEEEEEECGGGTTHHHHSSCCEEEECSCGGGS
T ss_pred ---------------cEEEEEcCCCC-eEEEEEEEEEEEeCc-EEE-EEEEEEEEecccCccccccCCceeEeccCCccc
Confidence 79999999997 899999999999984 888 9999999986 52 3 378999999998765
Q ss_pred h------hhhhccc---cCceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecc
Q 011556 277 L------VSQTSRK---YKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLP 347 (483)
Q Consensus 277 l------~sQ~~~~---~~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~ 347 (483)
. +.|+..+ ..++||+||++.+...|.|+|||+|++++.+++.|+|+.. +.+|.|.|+ |+||++ +
T Consensus 257 ~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~G~l~~~pv~~----~~~w~V~l~-I~Vgg~-~- 329 (453)
T 2bju_A 257 IGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNH----DLYWQITLD-AHVGNI-M- 329 (453)
T ss_dssp TTCCCCHHHHHHHTTSSSSCEEEEECCBTTTBCEEEEESSCCGGGEEEEEEEEEEEE----ETTEEEEEE-EEETTE-E-
T ss_pred ccCCCcHHHHHHHCCCCCCCEEEEEeCCCCCCCeEEEECCCCHHHcCCceEEEecCC----CceEEEEEE-EEECcE-E-
Confidence 4 2333332 2699999999865568999999999988999999999987 679999999 999994 3
Q ss_pred cCCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEc
Q 011556 348 IPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIE 427 (483)
Q Consensus 348 ~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~ 427 (483)
+ . ..++||||||++++||+++|++|.+++++. +...+..+..+|+ . ..+|+|+|+| +|++++|+
T Consensus 330 ~--~---~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~----~~~~g~~~~v~C~-----~-~~~P~itf~f-gg~~~~l~ 393 (453)
T 2bju_A 330 L--E---KANCIVDSGTSAITVPTDFLNKMLQNLDVI----KVPFLPFYVTLCN-----N-SKLPTFEFTS-ENGKYTLE 393 (453)
T ss_dssp E--E---EEEEEECTTCCSEEECHHHHHHHTTTSSCE----ECTTSSCEEEETT-----C-TTCCCEEEEC-SSCEEEEC
T ss_pred e--c---cccEEEcCCCCeEecCHHHHHHHHHHhCCc----ccCCCceEEEecC-----C-CCCCcEEEEE-CCEEEEEC
Confidence 2 1 156999999999999999999999988653 1112212334564 3 5789999999 78999999
Q ss_pred CCceEEEcC--CCeEEE-EEEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCC
Q 011556 428 GSAILIGSS--PKQICL-AFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKG 481 (483)
Q Consensus 428 ~~~~~~~~~--~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 481 (483)
+++|+++.. +...|+ +|.+.+...+.||||++|||++|+|||++++|||||+++
T Consensus 394 ~~~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILGd~Flr~~yvVFD~~n~rIGfA~~~ 450 (453)
T 2bju_A 394 PEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 450 (453)
T ss_dssp HHHHEEECTTTSTTEEEECEEECCCSSCEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred HHHhEeecccCCCceEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 999999864 356898 788764334689999999999999999999999999864
No 24
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=100.00 E-value=6.6e-55 Score=458.52 Aligned_cols=313 Identities=23% Similarity=0.344 Sum_probs=254.8
Q ss_pred cceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCCC
Q 011556 135 TGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAG 214 (483)
Q Consensus 135 ~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~ 214 (483)
+.+|+++|.||||+|+++|+|||||+++||+|.+| |.. ++.|||++|+||+...
T Consensus 73 ~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~c---c~~--~~~y~~~~SsT~~~~~--------------------- 126 (455)
T 3lpj_A 73 GQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH---PFL--HRYYQRQLSSTYRDLR--------------------- 126 (455)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC---TTC--SCCCCGGGCTTCEEEE---------------------
T ss_pred CCEEEEEEEECCCCeEEEEEEcCCCcceEEecccc---ccc--CCcccCCCCCCcccCC---------------------
Confidence 46899999999999999999999999999999988 643 4899999999999975
Q ss_pred CCceeeEEcCCCCeEEEEEEEEEEEecCCCccC-ceEEEEEEecCCCc---cCcceEeecCCCCCch------------h
Q 011556 215 STCVYGIEYGDNSFSAGFFAKETLTLTSSDVFP-NFLFGCGQYNRGLY---GQAAGLLGLGQDSISL------------V 278 (483)
Q Consensus 215 ~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~-~~~FG~~~~~~g~~---~~~~GilGLg~~~~Sl------------~ 278 (483)
|.|.+.|++|+ +.|.+++|+|+|++...+. .+.|+|+.+..+.| ...+||||||++.++. .
T Consensus 127 --~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~L~ 203 (455)
T 3lpj_A 127 --KGVYVPYTQGK-WEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLV 203 (455)
T ss_dssp --EEEEEECSSCE-EEEEEEEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHH
T ss_pred --ccEEEEeCCeE-EEEEEEEEEEEECCCcceeeEEEEEEEEccCcccccCCCcceEEEeCccccccccCCCCcHHHHHH
Confidence 69999999997 5999999999998532232 46789988876654 3689999999987543 3
Q ss_pred hhhccccCceEEEEcCCC----------CCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceeccc
Q 011556 279 SQTSRKYKKYFSYCLPSS----------SSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPI 348 (483)
Q Consensus 279 sQ~~~~~~~~FS~cL~~~----------~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~ 348 (483)
+|... .++||+||.+. ....|.|+|||+|++++.+++.|+|+.. ..+|.|.+++|+|+++.+.+
T Consensus 204 ~q~~i--~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~g~~~~~ 277 (455)
T 3lpj_A 204 KQTHV--PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR----EWYYEVIIVRVEINGQDLKM 277 (455)
T ss_dssp HHSCC--CSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCS----BTTBBCCEEEEEETTEECCC
T ss_pred HccCC--CceeEEEeccccccccccccccCCCceEEECCcCcccccCceEEEecCC----CceeEEEEeEEEECCEEccc
Confidence 34333 47999999753 2347999999999999999999999987 67999999999999999987
Q ss_pred CCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCC--CCCCccceecCCCcccccCeEEEEEcCCc----
Q 011556 349 PISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPA--LSILDTCYDFSNYTSISVPVISFFFNRGV---- 422 (483)
Q Consensus 349 ~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~--~~~~~~C~~~~~~~~~~~P~i~~~f~gg~---- 422 (483)
+...+....+||||||++++||+++|++|++++.+.+...+.... .....+|+.........+|+|+|+|.|+.
T Consensus 278 ~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~g~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~ 357 (455)
T 3lpj_A 278 DCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQS 357 (455)
T ss_dssp CGGGGGSSCEEECTTSSSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSSTTEE
T ss_pred cccccCCCeEEEECCCcceeCCHHHHHHHHHHhhhhccccccCcccccCcceecccccCCchhcCCcEEEEEcCCCcCce
Confidence 665544467999999999999999999999999998532111111 12356898766555557999999996543
Q ss_pred -EEEEcCCceEEEcCCC----eEEEEEEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCCCC
Q 011556 423 -EVSIEGSAILIGSSPK----QICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGCS 483 (483)
Q Consensus 423 -~~~l~~~~~~~~~~~~----~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 483 (483)
+++|++++|+++.... ..|++|... ...+.||||++|||++|+|||++++|||||+++|+
T Consensus 358 ~~~~l~~~~yi~~~~~~~~~~~~C~~f~~~-~~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 422 (455)
T 3lpj_A 358 FRITILPQQYLRPVEDVATSQDDCYKFAIS-QSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACH 422 (455)
T ss_dssp EEEEECHHHHEEEECCTTCCSCEEEEECEE-EESSCEEECHHHHTTEEEEEETTTTEEEEEEETTC
T ss_pred EEEEECHHHheEeccCCCCCCceEEEEecc-CCCCcEEEChHHhCCeEEEEECCCCEEEEEecccc
Confidence 5999999999986432 589975332 12457999999999999999999999999999995
No 25
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=100.00 E-value=1e-54 Score=449.18 Aligned_cols=311 Identities=23% Similarity=0.342 Sum_probs=251.4
Q ss_pred cceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCCC
Q 011556 135 TGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAG 214 (483)
Q Consensus 135 ~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~ 214 (483)
+.+|+++|.||||+|++.|+|||||+++||+|.+|.. | ++.|||++|+||+...
T Consensus 20 ~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~~-~----~~~y~~~~SsT~~~~~--------------------- 73 (395)
T 2qp8_A 20 GQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-L----HRYYQRQLSSTYRDLR--------------------- 73 (395)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTT-C----SCCCCGGGCTTCEEEE---------------------
T ss_pred CceEEEEEEecCCCceEEEEEecCCCceEEECCCCcc-c----cCCcCcccCCCceeCC---------------------
Confidence 4689999999999999999999999999999998832 3 3789999999999975
Q ss_pred CCceeeEEcCCCCeEEEEEEEEEEEecCCCccC-ceEEEEEEecCCCc---cCcceEeecCCCCCc------------hh
Q 011556 215 STCVYGIEYGDNSFSAGFFAKETLTLTSSDVFP-NFLFGCGQYNRGLY---GQAAGLLGLGQDSIS------------LV 278 (483)
Q Consensus 215 ~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~-~~~FG~~~~~~g~~---~~~~GilGLg~~~~S------------l~ 278 (483)
|.|.+.|++|+ ++|.+++|+|+|++...++ .+.|++.....+.| ...+||||||++.++ |+
T Consensus 74 --~~~~i~Yg~Gs-~~G~~~~Dtv~ig~g~~~~~~~~~~~~~~~~~~f~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~l~ 150 (395)
T 2qp8_A 74 --KGVYVPYTQGK-WEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLV 150 (395)
T ss_dssp --EEEEEECSSCE-EEEEEEEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHH
T ss_pred --ceEEEEECCcE-EEEEEEeEEEEECCCCCceEEEEEEEEEccCcccccccCccceEEcCchhhccCCCCCCCHHHHHH
Confidence 69999999997 5899999999998422333 36788887665555 367999999998753 34
Q ss_pred hhhccccCceEEEEcCCC----------CCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceeccc
Q 011556 279 SQTSRKYKKYFSYCLPSS----------SSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPI 348 (483)
Q Consensus 279 sQ~~~~~~~~FS~cL~~~----------~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~ 348 (483)
+|... +++||+||.+. ....|.|+|||+|++++.+++.|+|+.. ..+|.|.|++|+|+++.+.+
T Consensus 151 ~q~~i--~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~g~~~~~ 224 (395)
T 2qp8_A 151 KQTHV--PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR----EWYYEVIIVRVEINGQDLKM 224 (395)
T ss_dssp HHSCC--CSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCS----BTTBBCCEEEEEETTEECCC
T ss_pred HccCC--cceEEEEeccccccccccccccCCCcEEEECCcCcccccCceEEeccCC----CceEEEEEEEEEECCEEccc
Confidence 45443 47999999753 1257999999999988999999999987 57999999999999999887
Q ss_pred CCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCC--CCCCccceecCCCcccccCeEEEEEcCCc----
Q 011556 349 PISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPA--LSILDTCYDFSNYTSISVPVISFFFNRGV---- 422 (483)
Q Consensus 349 ~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~--~~~~~~C~~~~~~~~~~~P~i~~~f~gg~---- 422 (483)
+...|...++||||||++++||+++|++|++++.+.+.......+ .....+|+.........+|+|+|+|.|+.
T Consensus 225 ~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~ 304 (395)
T 2qp8_A 225 DCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQS 304 (395)
T ss_dssp CGGGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSSTTEE
T ss_pred CccccCCceEEEEcCCCcEecCHHHHHHHHHHHhhhcccccCCccccccccccccccccchHhhCCcEEEEEccCCCCce
Confidence 665554467999999999999999999999999987432111111 11245798765544557999999997653
Q ss_pred -EEEEcCCceEEEcCC----CeEEEE--EEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCCCC
Q 011556 423 -EVSIEGSAILIGSSP----KQICLA--FAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGCS 483 (483)
Q Consensus 423 -~~~l~~~~~~~~~~~----~~~Cl~--~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 483 (483)
+++|++++|+++... ...|++ +.+. ...||||++|||++|+|||++++|||||+++|+
T Consensus 305 ~~~~l~p~~yi~~~~~~~~~~~~C~~~~i~~~---~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 369 (395)
T 2qp8_A 305 FRITILPQQYLRPVEDVATSQDDCYKFAISQS---STGTVMGAVIMEGFYVVFDRARKRIGFAVSACH 369 (395)
T ss_dssp EEEEECHHHHEEEECCTTCCSCEEEEECEEEE---SSCEEECHHHHTTEEEEEETTTTEEEEEEETTC
T ss_pred EEEEECHHHhEeecccCCCCCceEEEEEecCC---CCcEEEChHHhCCeeEEEECCCCEEEEEeccCC
Confidence 799999999988532 358974 4432 357999999999999999999999999999995
No 26
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=100.00 E-value=1.5e-54 Score=456.74 Aligned_cols=320 Identities=24% Similarity=0.432 Sum_probs=255.9
Q ss_pred eeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc--ccccCCCCCCCCCCCCCccceecCCCcccc
Q 011556 123 TTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL--RFCYQQKEPIYDPSASRTYANVSCSSAICD 200 (483)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~--~~C~~~~~~~fdps~SsT~~~~~C~s~~C~ 200 (483)
..+|+.+ ..+.+|+++|.||||+|++.|+|||||+++||+|..|. ..|..+ +.|||++|+||+...
T Consensus 42 ~~~~l~n---~~~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~~~--~~y~~~~SsT~~~~~------- 109 (478)
T 1qdm_A 42 DIVALKN---YMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLH--SRYKAGASSTYKKNG------- 109 (478)
T ss_dssp CSGGGCC---GGGCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGGGS--CCBCGGGCTTCBCCC-------
T ss_pred ceEEeEe---ccCCEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCccccCC--CCCCcccCCCeeeCC-------
Confidence 4567753 45789999999999999999999999999999999994 469866 799999999998754
Q ss_pred CccCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCC-c--cCcceEeecCCCCCch
Q 011556 201 SLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGL-Y--GQAAGLLGLGQDSISL 277 (483)
Q Consensus 201 ~~~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~-~--~~~~GilGLg~~~~Sl 277 (483)
|.|.+.|++|+ +.|.+++|+|+|++. .++++.|||++...+. | ..++||||||++.+++
T Consensus 110 ----------------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~-~v~~~~Fg~a~~~~~~~f~~~~~dGIlGLg~~~~s~ 171 (478)
T 1qdm_A 110 ----------------KPAAIQYGTGS-IAGYFSEDSVTVGDL-VVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISV 171 (478)
T ss_dssp ----------------CEEEEEETTEE-EEEEEEEEEEEETTE-EEEEEEEEEEEECCBSHHHHCSSSEEEECSCGGGCG
T ss_pred ----------------cEEEEEcCCCC-eEEEEEEEEEEECCe-EECCEEEEEEEecCCcccccccccceeccccccccc
Confidence 68999999997 899999999999984 8999999999987652 3 3689999999998763
Q ss_pred ----------hhhhccccCceEEEEcCCCC--CCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECcee
Q 011556 278 ----------VSQTSRKYKKYFSYCLPSSS--SSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKK 345 (483)
Q Consensus 278 ----------~sQ~~~~~~~~FS~cL~~~~--~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~ 345 (483)
++|.... .++||+||++.. ...|+|+|||+|++++.+++.|+|+.. ..||.|.|++|+||++.
T Consensus 172 ~~~~p~~~~l~~qg~i~-~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~G~l~~~pv~~----~~~w~v~l~~i~v~g~~ 246 (478)
T 1qdm_A 172 GKAVPVWYKMIEQGLVS-DPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQ----KGYWQFDMGDVLVGGKS 246 (478)
T ss_dssp GGCCCHHHHHTTTTCCS-SSEEEEECCCC-----CEEEEETCCCTTSEEEEEEEEEEEE----ETTEEEEECCEEETTEE
T ss_pred CCCCcHHHHHHHCCCCC-CCEEEEEeecCCCCCCCeEEEeCCcCHhhcCCCceEEeccC----CCeEEEEEeEEEECCEE
Confidence 3333222 689999998753 348999999999999999999999986 67999999999999998
Q ss_pred cccCCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhh----------------------ccCCC-------------
Q 011556 346 LPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFM----------------------SKYPT------------- 390 (483)
Q Consensus 346 l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~----------------------~~~~~------------- 390 (483)
+.+.... .++||||||++++||+++|++|.+++++.. ++.+.
T Consensus 247 ~~~~~~~---~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~s~~Ck~~v~~yg~~ii~~l~~~~~p~~vC~~iglC~~~ 323 (478)
T 1qdm_A 247 TGFCAGG---CAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLCTFD 323 (478)
T ss_dssp CSTTTTC---EEEEECSSCCSEEECHHHHHHHHHHHTCCCBCCHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHTTCC---
T ss_pred EeecCCC---ceEEEcCCCCceeCCHHHHHHHHHHhCccccccccccchhhhhhhHHHHhhhhccChhhhhccccccccC
Confidence 7654332 469999999999999999999999986531 00000
Q ss_pred -C-----------C-------CC-------------------------------CCCccceec---------CCCccccc
Q 011556 391 -A-----------P-------AL-------------------------------SILDTCYDF---------SNYTSISV 411 (483)
Q Consensus 391 -~-----------~-------~~-------------------------------~~~~~C~~~---------~~~~~~~~ 411 (483)
. . .. ...+.|+.+ +|.....+
T Consensus 324 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~C~~Ce~~v~~~~~~l~~n~t~~~I~~~~~~~C~~~~~~~g~~~v~C~~~~~l 403 (478)
T 1qdm_A 324 GTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSM 403 (478)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCBCCSSSCCEECGGGGTTC
T ss_pred ccccccccccccccccccccccccccccchHHHHHHHHHHHHHhccccHHHHHHHHHHHhhccCCCCCeEEeeccccccc
Confidence 0 0 00 001234433 23344579
Q ss_pred CeEEEEEcCCcEEEEcCCceEEEcCC--CeEEE-EEEeCC---CCCCceEecHhhhcceEEEEECCCCEEEEeeCC
Q 011556 412 PVISFFFNRGVEVSIEGSAILIGSSP--KQICL-AFAGNS---DDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKG 481 (483)
Q Consensus 412 P~i~~~f~gg~~~~l~~~~~~~~~~~--~~~Cl-~~~~~~---~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 481 (483)
|+|+|+| ||++++|+|++|+++... ...|+ +|...+ ..++.||||++|||++|+|||++++|||||++.
T Consensus 404 P~i~f~~-gg~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~fl~~~y~vfD~~~~rIGfA~a~ 478 (478)
T 1qdm_A 404 PDIEFTI-GGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 478 (478)
T ss_dssp CCEEEEE-TTEEEEECHHHHEEECSCGGGCCEEESEEECCCCTTSCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred ccEEEEE-CCEEEEEChHHhEEEccCCCCCeEEEEEEeccCCCCCCCcEEECHHHhccEEEEEECCCCEEEEEeCC
Confidence 9999999 789999999999998654 35798 476543 134689999999999999999999999999863
No 27
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=100.00 E-value=2.2e-54 Score=447.70 Aligned_cols=315 Identities=22% Similarity=0.336 Sum_probs=252.0
Q ss_pred cceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCCC
Q 011556 135 TGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCAG 214 (483)
Q Consensus 135 ~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~ 214 (483)
..+|+++|+||||+|+++|+|||||+++||+|.+| |.. ++.|||++|+||+...
T Consensus 27 ~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c---~~~--~~~y~~~~SsT~~~~~--------------------- 80 (402)
T 3vf3_A 27 GQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH---PFL--HRYYQRQLSSTYRDLR--------------------- 80 (402)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC---TTC--SCCCCGGGCTTCEEEE---------------------
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCCceEEccCCC---Ccc--cCCcCcccCcccccCC---------------------
Confidence 36899999999999999999999999999999988 643 3899999999999975
Q ss_pred CCceeeEEcCCCCeEEEEEEEEEEEecCCCccC-ceEEEEEEecCCCc---cCcceEeecCCCCCch--------hhhhc
Q 011556 215 STCVYGIEYGDNSFSAGFFAKETLTLTSSDVFP-NFLFGCGQYNRGLY---GQAAGLLGLGQDSISL--------VSQTS 282 (483)
Q Consensus 215 ~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~-~~~FG~~~~~~g~~---~~~~GilGLg~~~~Sl--------~sQ~~ 282 (483)
|.|.+.|++|+ +.|.+++|+|+|++...++ .+.|+|.....+.+ ...+||||||++.++. +.|+.
T Consensus 81 --~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~L~ 157 (402)
T 3vf3_A 81 --KGVYVPYTQGK-WEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLV 157 (402)
T ss_dssp --EEEEEECSSCE-EEEEEEEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHH
T ss_pred --CEEEEEECcEE-EEEEEEEEEEEECCccccceeeeEEEEEccccccccCCCccceEEcCchhhcccCCcCCcHHHHHH
Confidence 69999999997 6999999999998533333 34588887776644 3689999999986543 22333
Q ss_pred cc--cCceEEEEcCCC----------CCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCC
Q 011556 283 RK--YKKYFSYCLPSS----------SSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPI 350 (483)
Q Consensus 283 ~~--~~~~FS~cL~~~----------~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~ 350 (483)
.+ ..++||+||.+. ....|.|+|||+|++++.+++.|+|+.. ..+|.|.+++|+|+++.+.++.
T Consensus 158 ~q~~i~~~FS~~l~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~g~~~~~~~ 233 (402)
T 3vf3_A 158 KQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRR----EWYYEVIIVRVEINGQDLKMDC 233 (402)
T ss_dssp HHSCCCSCEEEEECCCC-------------EEEEESSCCGGGEEEEEEEEECSS----BTTBEECEEEEEETTEECCCCG
T ss_pred HccCCccceEEEeecccccccccccccCCCCEEEeCCcCcccccCceEEEeCCc----CcEEEEEEeEEEECCEEecccc
Confidence 22 147999999743 2347999999999999999999999987 6799999999999999988766
Q ss_pred cccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCC--CCCCccceecCCCcccccCeEEEEEcCCc-----E
Q 011556 351 SVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPA--LSILDTCYDFSNYTSISVPVISFFFNRGV-----E 423 (483)
Q Consensus 351 ~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~--~~~~~~C~~~~~~~~~~~P~i~~~f~gg~-----~ 423 (483)
..+....+||||||++++||+++|++|++++++.+...+.... .....+|+.........+|+|+|+|.|+. +
T Consensus 234 ~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~ 313 (402)
T 3vf3_A 234 KEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFR 313 (402)
T ss_dssp GGGGSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCTTGGGTCSCEEEETTCCCGGGSCCEEEEEECSSTTEEEE
T ss_pred cccCCCeEEEECCCCcccCCHHHHHHHHHHHhhhccccccCccccccccccccccccchHhhCCceEEEEecCCCCceEE
Confidence 5444367999999999999999999999999998532111111 12356899876555557999999996543 5
Q ss_pred EEEcCCceEEEcCCC----eEEEEEEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCCCC
Q 011556 424 VSIEGSAILIGSSPK----QICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGCS 483 (483)
Q Consensus 424 ~~l~~~~~~~~~~~~----~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 483 (483)
++|++++|+++.... ..|++|... ...+.||||++|||++|+|||++++|||||+++|+
T Consensus 314 ~~l~~~~yi~~~~~~~~~~~~C~~~~~~-~~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~ 376 (402)
T 3vf3_A 314 ITILPQQYLRPVEDVATSQDDCYKFAIS-QSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACH 376 (402)
T ss_dssp EEECHHHHEEECCCGGGTTEEEEEECEE-EESSCEEECHHHHTTEEEEEEGGGTEEEEEEETTC
T ss_pred EEECHHHheehhccCCCCCceEEEEecc-CCCCcEEEChHHhCCeEEEEECCCCEEEEEecccC
Confidence 999999999986432 489964322 12357999999999999999999999999999995
No 28
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=100.00 E-value=1.5e-54 Score=453.17 Aligned_cols=305 Identities=19% Similarity=0.305 Sum_probs=253.8
Q ss_pred ceeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCcccc
Q 011556 122 ATTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL-RFCYQQKEPIYDPSASRTYANVSCSSAICD 200 (483)
Q Consensus 122 ~~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~-~~C~~~~~~~fdps~SsT~~~~~C~s~~C~ 200 (483)
...+|+.+ ..+.+|+++|.||||+|++.|++||||+++||+|.+|. ..|..+ +.|||++|+||+...
T Consensus 126 ~~~~pL~n---~~d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~~--~~ydps~SsT~~~~~------- 193 (451)
T 3qvc_A 126 FDNVELKD---LANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESK--NHYDSSKSKTYEKDD------- 193 (451)
T ss_dssp -CCCCGGG---GBCEEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTTS--CCBCGGGCTTCEEEE-------
T ss_pred CCccceee---cCCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCCC--CCCCCCCCcccccCC-------
Confidence 35677763 45789999999999999999999999999999999993 469655 899999999999865
Q ss_pred CccCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEe----cCCCcc--CcceEeecCCCC
Q 011556 201 SLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQY----NRGLYG--QAAGLLGLGQDS 274 (483)
Q Consensus 201 ~~~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~----~~g~~~--~~~GilGLg~~~ 274 (483)
|.|.+.|+||+ +.|.+++|+|+|++. .++ +.|||++. ..+ +. ..+||||||++.
T Consensus 194 ----------------~~f~i~YgdGs-~~G~~~~Dtv~igg~-~v~-~~Fg~a~~t~~~~~~-f~~~~~dGILGLg~~~ 253 (451)
T 3qvc_A 194 ----------------TPVKLTSKAGT-ISGIFSKDLVTIGKL-SVP-YKFIEMTEIVGFEPF-YSESDVDGVFGLGWKD 253 (451)
T ss_dssp ----------------EEEEEECSSEE-EEEEEEEEEEEETTE-EEE-EEEEEEEEEEECTTH-HHHSCCCEEEECSSBC
T ss_pred ----------------CEEEEEECCCE-EEEEEEEEEEEECCE-EEE-EEEEEEEeccccCCC-ccCCCCCEEEecCCCc
Confidence 69999999997 999999999999984 888 99999998 655 42 679999999987
Q ss_pred Cc------hhhhhccc---cCceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECcee
Q 011556 275 IS------LVSQTSRK---YKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKK 345 (483)
Q Consensus 275 ~S------l~sQ~~~~---~~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~ 345 (483)
++ ++.|+..+ ..++||+||.+.....|.|+|||+|++++.+++.|+|+.. +.+|.|.++ |+||++
T Consensus 254 ~s~~~~~~~~~~L~~qg~I~~~~FS~~L~~~~~~~G~l~fGgiD~s~y~G~l~~~pv~~----~~~w~v~l~-I~Vgg~- 327 (451)
T 3qvc_A 254 LSIGSIDPYIVELKTQNKIEQAVYSIYLPPENKNKGYLTIGGIEERFFDGPLNYEKLNH----DLMWQVDLD-VHFGNV- 327 (451)
T ss_dssp SSSSCCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEECSS----TTSSEEEEE-EEETTE-
T ss_pred ccccCCCCHHHHHHHcCCCCCCEEEEEEcCCCCCCCEEEECCcchhhcCCceEEEEccc----CCeeEEEEE-EEECCc-
Confidence 54 34444333 2789999999876668999999999999999999999986 689999999 999998
Q ss_pred cccCCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEE
Q 011556 346 LPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVS 425 (483)
Q Consensus 346 l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~ 425 (483)
. . .. ..+||||||++++||++++++|.+++++.. .... .+|.++|. ...+|+|+|+| ||++++
T Consensus 328 ~--~-~~---~~aiiDSGTt~i~lP~~~~~~i~~~i~a~~---~~~~------g~y~v~C~-~~~~P~itf~f-gg~~i~ 390 (451)
T 3qvc_A 328 S--S-KK---ANVILDSATSVITVPTEFFNQFVESASVFK---VPFL------SLYVTTCG-NTKLPTLEYRS-PNKVYT 390 (451)
T ss_dssp E--E-EE---EEEEECTTBSSEEECHHHHHHHHTTTTCEE---CTTS------SCEEEETT-CTTCCCEEEEE-TTEEEE
T ss_pred c--C-CC---ceEEEeCCCccccCCHHHHHHHHHHcCCee---cCCC------CeEEeeCC-cCcCCcEEEEE-CCEEEE
Confidence 1 1 11 459999999999999999999999997642 1111 13444444 46789999999 789999
Q ss_pred EcCCceEEEcC--CCeEEE-EEEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCC
Q 011556 426 IEGSAILIGSS--PKQICL-AFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKG 481 (483)
Q Consensus 426 l~~~~~~~~~~--~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 481 (483)
|++++|+++.. ....|+ +|.+.+...+.||||++|||++|+|||.+++|||||+++
T Consensus 391 lp~~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ak 449 (451)
T 3qvc_A 391 LEPKQYLEPLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFTVYDYDNHTVGFALAK 449 (451)
T ss_dssp ECHHHHEEECTTTSTTEEEECEEECCCSTTEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EcHHHheeecccCCCCeEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 99999999864 357898 677653225689999999999999999999999999874
No 29
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=100.00 E-value=1.8e-54 Score=436.87 Aligned_cols=307 Identities=16% Similarity=0.215 Sum_probs=251.8
Q ss_pred eeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc-ccccCCCCCCCCCCCCCccceecCCCccccC
Q 011556 123 TTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL-RFCYQQKEPIYDPSASRTYANVSCSSAICDS 201 (483)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~-~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~ 201 (483)
..+|+. +..+.+|+++|.|| +|++.|+|||||+++||+|.+|. ..|+.+.++.|||++| ||+...
T Consensus 7 ~~~~l~---n~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~S-T~~~~~-------- 72 (330)
T 1yg9_A 7 LYKLVH---VFINTQYAGITKIG--NQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKP-KYISDG-------- 72 (330)
T ss_dssp SCSCEE---EEECTTSEEEEEET--TEEEEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSC-EEEEEE--------
T ss_pred eEeeee---cCCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCCccCcccccCccCCCCC-ceEECC--------
Confidence 345554 34568999999999 99999999999999999999994 4695444589999999 998864
Q ss_pred ccCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCCc--cCcceEeecCCCCCc---
Q 011556 202 LESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLY--GQAAGLLGLGQDSIS--- 276 (483)
Q Consensus 202 ~~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~~--~~~~GilGLg~~~~S--- 276 (483)
|.|.+.|++|+ +.|.+++|+|+|++. .++++.|||++.....| ...+||||||++.++
T Consensus 73 ---------------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~-~~~~~~fg~~~~~~~~f~~~~~~GilGLg~~~~s~~~ 135 (330)
T 1yg9_A 73 ---------------NVQVKFFDTGS-AVGRGIEDSLTISQL-TTSQQDIVLADELSQEVCILSADVVVGIAAPGCPNAL 135 (330)
T ss_dssp ---------------EEEEEETTTEE-EEEEEEEEEEEETTE-EEEEEEEEEEEEECTHHHHTTCSEEEECSCTTSCCTT
T ss_pred ---------------CEEEEEECCce-EEEEEEEEEEEECCE-EEcCeEEEEEEEcccccccccCceEEEcCcchhcccc
Confidence 69999999997 599999999999984 89999999999884333 268999999999877
Q ss_pred ----hhhhhccc--cCceEEEEcCCCCCC--CceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceeccc
Q 011556 277 ----LVSQTSRK--YKKYFSYCLPSSSSS--TGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPI 348 (483)
Q Consensus 277 ----l~sQ~~~~--~~~~FS~cL~~~~~~--~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~ 348 (483)
++.|+..+ .+++||+||.+..+. .|.|+|||+|++++.+++.|+|+.. +.+|.|.|++|+|+++.+.
T Consensus 136 ~~~~~~~~l~~qg~i~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~~~~~~- 210 (330)
T 1yg9_A 136 KGKTVLENFVEENLIAPVFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVG----DDSWKFRLDGVKIGDTTVA- 210 (330)
T ss_dssp SCCCHHHHHHHTTSSCSEEEEEEEECTTSCEEEEEEETSCCGGGEEEEEEEEEBSC----TTSCCEECSEEEETTEEEE-
T ss_pred CCCCHHHHHHhcCCCCceEEEEEcCCCCCCCCCEEEECCcCHHHccCceEEEECCC----CCEEEEEeCeEEECCEEEc-
Confidence 34444322 179999999876332 7999999999989999999999986 6799999999999998864
Q ss_pred CCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccce-ecCCCcccccCeEEEEEcCCcEEEEc
Q 011556 349 PISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCY-DFSNYTSISVPVISFFFNRGVEVSIE 427 (483)
Q Consensus 349 ~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~-~~~~~~~~~~P~i~~~f~gg~~~~l~ 427 (483)
+ .. ..+||||||++++||+++|++|++++++... . .+. ..| .++|.....+|+|+|+| ||++++|+
T Consensus 211 ~-~~---~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~---~-~g~----~~~~~~~C~~~~~~p~i~f~f-gg~~~~l~ 277 (330)
T 1yg9_A 211 P-AG---TQAIIDTSKAIIVGPKAYVNPINEAIGCVVE---K-TTT----RRICKLDCSKIPSLPDVTFVI-NGRNFNIS 277 (330)
T ss_dssp C-TT---CEEEECTTCSSEEEEHHHHHHHHHHHTCEEE---E-CSS----CEEEEECGGGGGGSCCEEEEE-TTEEEEEC
T ss_pred C-CC---cEEEEecCCccccCCHHHHHHHHHHhCCccc---C-CCc----eEEEEEECCCccccCcEEEEE-CCEEEEEC
Confidence 1 11 4699999999999999999999999976421 1 110 023 34444456799999999 79999999
Q ss_pred CCceEEEcCCCeEEE-EEEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCC
Q 011556 428 GSAILIGSSPKQICL-AFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKG 481 (483)
Q Consensus 428 ~~~~~~~~~~~~~Cl-~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 481 (483)
+++|+++. ...|+ +|.+. ...+.||||++|||++|+|||++++|||||+++
T Consensus 278 ~~~y~~~~--~~~C~~~i~~~-~~~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~ 329 (330)
T 1yg9_A 278 SQYYIQQN--GNLCYSGFQPC-GHSDHFFIGDFFVDHYYSEFNWENKTMGFGRSV 329 (330)
T ss_dssp HHHHEEEE--TTEEEESEEEE-TTCSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred HHHhcccC--CCcEEEEEEeC-CCCCeEEecHHHhhheEEEEECCCCEEEEEECC
Confidence 99999887 56898 67765 234689999999999999999999999999864
No 30
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=100.00 E-value=9e-54 Score=430.87 Aligned_cols=298 Identities=22% Similarity=0.332 Sum_probs=244.7
Q ss_pred CcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCC
Q 011556 134 ATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCA 213 (483)
Q Consensus 134 ~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~ 213 (483)
.+.+|+++|.|| +|++.|+|||||+++||+|.+|.. |..+.++.|||++|+ ++..
T Consensus 12 ~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~-~~c~~~~~y~~~~Ss-~~~~--------------------- 66 (325)
T 1ibq_A 12 NDEEYLTPVTVG--KSTLHLDFDTGSADLWVFSDELPS-SEQTGHDLYTPSSSA-TKLS--------------------- 66 (325)
T ss_dssp TTSCEEEEEEEB--TEEEEEEEETTCCCEEEECTTSCH-HHHTTSCCCBCCSSC-EECT---------------------
T ss_pred CCCEEEEEEEEC--CEEEEEEEeCCCccceEeeCCCCc-cccCCCCCCCchhcC-CccC---------------------
Confidence 578999999999 999999999999999999999954 554556899999998 4421
Q ss_pred CCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCCc---cCcceEeecCCCCCch---------hhhh
Q 011556 214 GSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLY---GQAAGLLGLGQDSISL---------VSQT 281 (483)
Q Consensus 214 ~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~~---~~~~GilGLg~~~~Sl---------~sQ~ 281 (483)
.|.|.+.|++|+.+.|.+++|+|+|++ ..++++.|||++...+.+ ...+||||||++.++. +.|+
T Consensus 67 --~~~~~i~Yg~Gs~~~G~~~~D~v~ig~-~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~~~l 143 (325)
T 1ibq_A 67 --GYSWDISYGDGSSASGDVYRDTVTVGG-VTTNKQAVEAASKISSEFVQDTANDGLLGLAFSSINTVQPKAQTTFFDTV 143 (325)
T ss_dssp --TCBEEEECSSSCEEEEEEEEEEEEETT-EEEEEEEEEEEEEECHHHHTSTTCCEEEECSCGGGCCCBSSCCCCHHHHH
T ss_pred --CCEEEEEeCCCCEEEEEEEEeEEEECC-EEEcceEEEEEEecCccccccCCCceEEEeCcccccccCcCCCCCHHHHH
Confidence 269999999998899999999999998 489999999999876533 3689999999987653 3555
Q ss_pred cccc-CceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEEE
Q 011556 282 SRKY-KKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAII 360 (483)
Q Consensus 282 ~~~~-~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~ii 360 (483)
.... .++||+||.+. ..|.|+|||+|++++.+++.|+|+.. ...+|.|.|++|+|+++.+. ... .++||
T Consensus 144 ~~~i~~~~FS~~l~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~---~~~~w~v~l~~i~v~~~~~~--~~~---~~aii 213 (325)
T 1ibq_A 144 KSQLDSPLFAVQLKHD--APGVYDFGYIDDSKYTGSITYTDADS---SQGYWGFSTDGYSIGDGSSS--SSG---FSAIA 213 (325)
T ss_dssp GGGSSSSEEEEEEETT--EEEEEEESSCCGGGBSSCCEEEECBC---TTSSCEEEECEEEETTSCCB--SCC---EEEEE
T ss_pred HHhcCCcEEEEEecCC--CCceEEECCcChhhccCceEEEEcCC---CCceEEEEECcEEECCeecc--CCC---ceEEE
Confidence 4433 68999999863 47999999999999999999999985 25789999999999998764 222 46999
Q ss_pred cccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEEcC--CC
Q 011556 361 DSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSS--PK 438 (483)
Q Consensus 361 DSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~--~~ 438 (483)
||||++++||+++|++|++++.+.. +....+. +..+|+ ..+|+|+|+| ||++++||+++|++... +.
T Consensus 214 DSGTt~~~lP~~~~~~i~~~i~~a~--~~~~~g~-~~~~C~-------~~~P~i~f~f-gg~~~~i~~~~~~~~~~~~~~ 282 (325)
T 1ibq_A 214 DTGTTLILLDDEIVSAYYEQVSGAQ--ESYEAGG-YVFSCS-------TDLPDFTVVI-GDYKAVVPGKYINYAPVSTGS 282 (325)
T ss_dssp CTTCCSEEECHHHHHHHHTTSTTCB--CCSSSSS-CEEETT-------CCCCCEEEEE-TTEEEEECHHHHEEEESSTTC
T ss_pred eCCCCcEeCCHHHHHHHHHhCCCce--EcCcCCe-EEEEcC-------CCCCcEEEEE-CCEEEEECHHHhcccccCCCC
Confidence 9999999999999999999984331 2222222 223574 3689999999 79999999999998753 34
Q ss_pred eEEEE-EEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCC
Q 011556 439 QICLA-FAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKG 481 (483)
Q Consensus 439 ~~Cl~-~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 481 (483)
..|++ |.+. +..+.||||++|||++|+|||++++|||||+++
T Consensus 283 ~~C~~~i~~~-~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 325 (325)
T 1ibq_A 283 STCYGGIQSN-SGLGLSILGDVFLKSQYVVFNSEGPKLGFAAQA 325 (325)
T ss_dssp SEEEESEEEC-TTTCSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred CeEEEEEEcC-CCCCceEEChHHhcCEEEEEECCCCEEEeeeCC
Confidence 78996 6654 335689999999999999999999999999874
No 31
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=100.00 E-value=8.6e-54 Score=430.63 Aligned_cols=297 Identities=22% Similarity=0.338 Sum_probs=243.4
Q ss_pred CcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCC
Q 011556 134 ATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCA 213 (483)
Q Consensus 134 ~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~ 213 (483)
.+.+|+++|.|| +|++.|+|||||+++||+|.+|.. |..+.++.|||++|+ ++...
T Consensus 13 ~~~~Y~~~i~iG--~q~~~v~~DTGSs~lWv~~~~C~~-~~c~~~~~y~~~~Ss-~~~~~-------------------- 68 (323)
T 1izd_A 13 NDEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTPS-SERSGHDYYTPGSSA-QKIDG-------------------- 68 (323)
T ss_dssp GGCCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCH-HHHTTCCCBCCCTTC-EEEEE--------------------
T ss_pred CCCEEEEEEEEC--CEEEEEEEcCCCcceEEecCCCCc-ccccCCCCCCccccC-CccCC--------------------
Confidence 468999999999 899999999999999999999954 544556899999999 55332
Q ss_pred CCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCCc---cCcceEeecCCCCCch---------hhhh
Q 011556 214 GSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLY---GQAAGLLGLGQDSISL---------VSQT 281 (483)
Q Consensus 214 ~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~~---~~~~GilGLg~~~~Sl---------~sQ~ 281 (483)
|.|.+.|++|+.+.|.+++|+|+|++ ..++++.|||++...+.+ ...+||||||++.++. ..|+
T Consensus 69 ---~~~~i~Yg~Gs~~~G~~~~D~v~ig~-~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~~~l 144 (323)
T 1izd_A 69 ---ATWSISYGDGSSASGDVYKDKVTVGG-VSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQKTFFDNV 144 (323)
T ss_dssp ---EEEEEECTTSCEEEEEEEEEEEEETT-EEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHH
T ss_pred ---CeEEEEcCCCCeEEEEEEEEEEEECC-EEECceEEEEEEeccccccccCCCceEEecCcccccccCCCCCCCHHHHH
Confidence 79999999998889999999999998 489999999999876633 3689999999987654 3344
Q ss_pred ccc-cCceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEEE
Q 011556 282 SRK-YKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAII 360 (483)
Q Consensus 282 ~~~-~~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~ii 360 (483)
... .+++||+||.+. ..|.|+|||+|++++.+++.|+|+.. ...+|.|.+++|+|++ .+. ... ..+||
T Consensus 145 ~~~i~~~~FS~~L~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~---~~~~w~v~l~~i~v~~-~~~--~~~---~~aii 213 (323)
T 1izd_A 145 KSSLSEPIFAVALKHN--APGVYDFGYTDSSKYTGSITYTDVDN---SQGFWGFTADGYSIGS-DSS--SDS---ITGIA 213 (323)
T ss_dssp GGGSSSSEEEEECCTT--SCEEEEESSCCTTSEEEEEEEEECBC---TTSSCEEEESEEEETT-EEE--CCC---EEEEE
T ss_pred HHhccCcEEEEEccCC--CCCEEEECCcCccccccceEEEECCC---CCceEEEEECeEEECC-ccc--CCC---ceEEE
Confidence 332 268999999864 47999999999999999999999985 2578999999999999 543 222 45999
Q ss_pred cccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEEcCCCeE
Q 011556 361 DSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSPKQI 440 (483)
Q Consensus 361 DSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~ 440 (483)
||||++++||+++|++|.+++.+.. +....+. +..+|+ ..+|+|+|+| ||++++|++++|+++......
T Consensus 214 DSGTs~~~lp~~~~~~i~~~i~ga~--~~~~~g~-~~~~C~-------~~~P~i~f~f-gg~~~~i~~~~~~~~~~~~~~ 282 (323)
T 1izd_A 214 DTGTTLLLLDDSIVDAYYEQVNGAS--YDSSQGG-YVFPSS-------ASLPDFSVTI-GDYTATVPGEYISFADVGNGQ 282 (323)
T ss_dssp CTTCCSEEECHHHHHHHHTTSTTCE--EETTTTE-EEEETT-------CCCCCEEEEE-TTEEEEECHHHHEEEECSTTE
T ss_pred eCCCcceeCCHHHHHHHHHhCCCcE--EcCcCCE-EEEECC-------CCCceEEEEE-CCEEEecCHHHeEEecCCCCe
Confidence 9999999999999999999885321 1111122 222463 3689999999 799999999999988655678
Q ss_pred EEE-EEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCC
Q 011556 441 CLA-FAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKG 481 (483)
Q Consensus 441 Cl~-~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 481 (483)
|++ |.+.+ ..+.||||++|||++|+|||++++|||||+++
T Consensus 283 C~~~i~~~~-~~~~~IlG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1izd_A 283 TFGGIQSNS-GIGFSIFGDVFLKSQYVVFDASGPRLGFAAQA 323 (323)
T ss_dssp EEESEEECT-TTSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEEcCC-CCCcEEEChHHhcCEEEEEECCCCEEEEeeCC
Confidence 996 76652 35689999999999999999999999999864
No 32
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=100.00 E-value=9.8e-54 Score=430.25 Aligned_cols=296 Identities=24% Similarity=0.364 Sum_probs=241.7
Q ss_pred CcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCccCCCCCCCCCC
Q 011556 134 ATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSLESGTGMTPQCA 213 (483)
Q Consensus 134 ~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~ 213 (483)
.+.+|+++|.|| +|++.|+|||||+++||+|.+|.. |..+.++.|||++|+ ++...
T Consensus 13 ~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~-~~c~~~~~y~~~~Ss-~~~~~-------------------- 68 (323)
T 1bxo_A 13 NDEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELPA-SQQSGHSVYNPSATG-KELSG-------------------- 68 (323)
T ss_dssp GGSCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCH-HHHTTSCCBCHHHHC-EEEEE--------------------
T ss_pred CCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCc-hhccCCCCCCcccCC-cccCC--------------------
Confidence 568999999999 999999999999999999999954 554556899999998 55432
Q ss_pred CCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCCc---cCcceEeecCCCCCch---------hhhh
Q 011556 214 GSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLY---GQAAGLLGLGQDSISL---------VSQT 281 (483)
Q Consensus 214 ~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~~---~~~~GilGLg~~~~Sl---------~sQ~ 281 (483)
|.|.+.|++|+.+.|.+++|+|+|++. .++++.|||++...+.+ ...+||||||++.++. ..|+
T Consensus 69 ---~~~~i~Yg~Gs~~~G~~~~D~v~ig~~-~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l 144 (323)
T 1bxo_A 69 ---YTWSISYGDGSSASGNVFTDSVTVGGV-TAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTV 144 (323)
T ss_dssp ---EEEEEECTTSCEEEEEEEEEEEEETTE-EEEEEEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBSSCCCCHHHHH
T ss_pred ---CeEEEEeCCCCeEEEEEEEEEEEECCE-EECcEEEEEEEecCcccccCCCCceEEEeCcccccccccCCCCCHHHHH
Confidence 799999999988899999999999984 89999999999876633 3689999999987654 3343
Q ss_pred ccc-cCceEEEEcCCCCCCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEEE
Q 011556 282 SRK-YKKYFSYCLPSSSSSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAII 360 (483)
Q Consensus 282 ~~~-~~~~FS~cL~~~~~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~ii 360 (483)
... .+++||+||.+. ..|.|+|||+|++++.+++.|+|+... ..+|.|.|++|+|++ .. ... ..+||
T Consensus 145 ~~~i~~~~FS~~L~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~---~~~w~v~l~~i~v~~-~~---~~~---~~aii 212 (323)
T 1bxo_A 145 KSSLAQPLFAVALKHQ--QPGVYDFGFIDSSKYTGSLTYTGVDNS---QGFWSFNVDSYTAGS-QS---GDG---FSGIA 212 (323)
T ss_dssp GGGBSSSEEEEECCSS--SCEEEEESSCCGGGBSSCCEEEECBCT---TSSCEEEEEEEEETT-EE---EEE---EEEEE
T ss_pred HHhcCCcEEEEEEeCC--CCceEEEeCcChhhccCceEEEECCCC---CCeEEEEEeeEEECC-cc---CCC---ceEEE
Confidence 322 268999999863 479999999999999999999999852 578999999999999 21 111 45999
Q ss_pred cccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEEcC-CCe
Q 011556 361 DSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSS-PKQ 439 (483)
Q Consensus 361 DSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~-~~~ 439 (483)
||||++++||+++|++|++++.+.. +....+. +..+|+ ..+|+|+|+| ||++++||+++|+++.. ...
T Consensus 213 DSGTs~~~lP~~~~~~l~~~i~~a~--~~~~~g~-~~~~C~-------~~~P~i~f~f-gg~~~~l~~~~~~~~~~~~~~ 281 (323)
T 1bxo_A 213 DTGTTLLLLDDSVVSQYYSQVSGAQ--QDSNAGG-YVFDCS-------TNLPDFSVSI-SGYTATVPGSLINYGPSGDGS 281 (323)
T ss_dssp CTTCSSEEECHHHHHHHHTTSTTCE--EETTTTE-EEECTT-------CCCCCEEEEE-TTEEEEECHHHHEEEECSSSS
T ss_pred eCCCCceeCCHHHHHHHHHhCCCce--EcCcCCE-EEEECC-------CCCceEEEEE-CCEEEEECHHHeEEeccCCCC
Confidence 9999999999999999999984331 1111121 223463 3689999999 78999999999998763 347
Q ss_pred EEEE-EEeCCCCCCceEecHhhhcceEEEEECCCCEEEEeeCC
Q 011556 440 ICLA-FAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKG 481 (483)
Q Consensus 440 ~Cl~-~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~ 481 (483)
.|++ |.+.+ ..+.||||++|||++|+|||++++|||||+++
T Consensus 282 ~C~~~i~~~~-~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1bxo_A 282 TCLGGIQSNS-GIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA 323 (323)
T ss_dssp CEEESEEECT-TCSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred eEEEEEECCC-CCCcEEEChHHHcCEEEEEECCCCEEEEecCC
Confidence 8996 66652 35689999999999999999999999999874
No 33
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=100.00 E-value=5.4e-53 Score=427.82 Aligned_cols=301 Identities=21% Similarity=0.392 Sum_probs=243.3
Q ss_pred eeeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCccccccCCCCCCCCCCCCCccceecCCCccccCc
Q 011556 123 TTIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCLRFCYQQKEPIYDPSASRTYANVSCSSAICDSL 202 (483)
Q Consensus 123 ~~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~ 202 (483)
.++|+++. +.+|+++|.||||+|++.|+|||||+++||+|. +.|||++|+++..
T Consensus 3 ~~~~l~n~----~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~-----------~~y~~s~Ss~~~~----------- 56 (340)
T 1wkr_A 3 GSVPATNQ----LVDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD-----------KSYVKTSTSSATS----------- 56 (340)
T ss_dssp EEEEEEEC----SSCEEEEEEETTTTEEEEEEEETTCCCCEECSS-----------SCCCCCTTCEEEE-----------
T ss_pred ccEeeecc----CcEEEEEEEECCCCcEEEEEEeCCChhheecCC-----------CccCCcCCccccC-----------
Confidence 45777642 468999999999999999999999999999864 4799998886432
Q ss_pred cCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCCCccCcceEeecCCCCCch-----
Q 011556 203 ESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRGLYGQAAGLLGLGQDSISL----- 277 (483)
Q Consensus 203 ~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g~~~~~~GilGLg~~~~Sl----- 277 (483)
|.|.+.|++|+ ++|.+++|+|+|++ ..++++.|||++...+ |...+||||||++.+++
T Consensus 57 --------------~~~~i~Yg~Gs-~~G~~~~Dtv~~g~-~~v~~~~fg~~~~~~~-~~~~~GilGLg~~~~s~~~~~~ 119 (340)
T 1wkr_A 57 --------------DKVSVTYGSGS-FSGTEYTDTVTLGS-LTIPKQSIGVASRDSG-FDGVDGILGVGPVDLTVGTLSP 119 (340)
T ss_dssp --------------EEEEEECSSCE-EEEEEEEEEEEETT-EEEEEEEEEEEEEEES-CTTCSEEEECSCGGGGTTSEES
T ss_pred --------------ceEEEEECCcE-EEEEEEEEEEEECC-EEEcceEEEEEEccCC-CcCCCcEEECCccccccccccc
Confidence 79999999997 89999999999998 4899999999999776 56789999999987654
Q ss_pred ---------hhhhccc---cCceEEEEcCCCC---CCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEEC
Q 011556 278 ---------VSQTSRK---YKKYFSYCLPSSS---SSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVG 342 (483)
Q Consensus 278 ---------~sQ~~~~---~~~~FS~cL~~~~---~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVg 342 (483)
+.++..+ .+++||+||.+.. ...|.|+|||+|++++.+++.|+|+..++....||.|. ++|+|+
T Consensus 120 ~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~w~v~-~~i~v~ 198 (340)
T 1wkr_A 120 HTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGIN-QSIRYG 198 (340)
T ss_dssp CTTCCCCCHHHHHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCGGGCSSCCEEEECCSSTTGGGSSEEE-EEEEET
T ss_pred cccccCCCHHHHHHHcCCCCCCEEEEEecCCCCCCCCCcEEEEcccChhhcccceEEEECccCCCCcceEEEE-eeEEEC
Confidence 2233222 1689999998642 24799999999998999999999999865446799999 999999
Q ss_pred c-eecccCCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCCCCCCCCCCccceecCCCcccccCeEEEEEcCC
Q 011556 343 G-KKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYPTAPALSILDTCYDFSNYTSISVPVISFFFNRG 421 (483)
Q Consensus 343 g-~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg 421 (483)
+ +.+..+ ..+||||||++++||+++|++|.+++++.+ ....+ +|.++|.....+|+|+|+| +|
T Consensus 199 ~~~~l~~~------~~aiiDSGTt~~~lP~~~~~~l~~~~~a~~---~~~~g------~~~~~C~~~~~~p~i~f~f-~g 262 (340)
T 1wkr_A 199 SSTSILSS------TAGIVDTGTTLTLIASDAFAKYKKATGAVA---DNNTG------LLRLTTAQYANLQSLFFTI-GG 262 (340)
T ss_dssp TTEEEEEE------EEEEECTTBCSEEECHHHHHHHHHHHTCEE---CTTTS------SEEECHHHHHTCCCEEEEE-TT
T ss_pred CCeEccCC------CeEEEeCCcccccCCHHHHHHHHHhhCCEE---cCCCC------eEEeeccccccCCcEEEEE-CC
Confidence 8 776421 459999999999999999999999887652 21111 2333333445789999999 78
Q ss_pred cEEEEcCCceEEEcC-------CCeEEE-EEEeCCC---CCCceEecHhhhcceEEEEECCCCEEEEeeCCCC
Q 011556 422 VEVSIEGSAILIGSS-------PKQICL-AFAGNSD---DSDVAIIGNVQQKTLEVVYDVAQRRVGFAPKGCS 483 (483)
Q Consensus 422 ~~~~l~~~~~~~~~~-------~~~~Cl-~~~~~~~---~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~~~C~ 483 (483)
++++|++++|+++.. ....|+ +|.+... .+..||||++|||++|+|||++++|||||+++|+
T Consensus 263 ~~~~i~~~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~ 335 (340)
T 1wkr_A 263 QTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATTSFT 335 (340)
T ss_dssp EEEEECTGGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEECTTT
T ss_pred EEEEEcHHHhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCeEEEEecCCC
Confidence 999999999997642 234675 6765421 2346999999999999999999999999999985
No 34
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=100.00 E-value=3.5e-43 Score=338.48 Aligned_cols=222 Identities=25% Similarity=0.450 Sum_probs=190.4
Q ss_pred eeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc--ccccCCCCCCCCCCCCCccceecCCCccccC
Q 011556 124 TIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL--RFCYQQKEPIYDPSASRTYANVSCSSAICDS 201 (483)
Q Consensus 124 ~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~--~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~ 201 (483)
.+|+.+ ..+.+|+++|.||||+|++.|+|||||+++||+|.+|. ..|..+ +.|||++|+||+...
T Consensus 4 ~~~l~n---~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~--~~y~~~~SsT~~~~~-------- 70 (239)
T 1b5f_A 4 VVALTN---DRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAH--SMYESSDSSTYKENG-------- 70 (239)
T ss_dssp EEEEEE---ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHHTS--CCBCGGGCTTCEEEE--------
T ss_pred eeeeee---cCCCEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccCCC--CCCCCccCCCeeeCC--------
Confidence 467753 46789999999999999999999999999999999994 358765 799999999999875
Q ss_pred ccCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecCCCccCceEEEEEEecCC-Cc--cCcceEeecCCCCCc--
Q 011556 202 LESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTSSDVFPNFLFGCGQYNRG-LY--GQAAGLLGLGQDSIS-- 276 (483)
Q Consensus 202 ~~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~~~~~~~~~FG~~~~~~g-~~--~~~~GilGLg~~~~S-- 276 (483)
|.|.+.|++|+ +.|.+++|+|+|++. .++++.|||++...+ .| ...+||||||++.++
T Consensus 71 ---------------~~~~i~Yg~Gs-~~G~~~~D~v~~g~~-~v~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s~p 133 (239)
T 1b5f_A 71 ---------------TFGAIIYGTGS-ITGFFSQDSVTIGDL-VVKEQDFIEATDEADNVFLHRLFDGILGLSFQTISVP 133 (239)
T ss_dssp ---------------EEEEEECSSCE-EEEEEEEEEEEETTE-EEEEEEEEEEEEECHHHHTTCSCCEEEECSCCSSSCC
T ss_pred ---------------cEEEEEECCCc-EEEEEEEEEEEECCc-EEccEEEEEEEeccCccccccCcceEEecCccccccH
Confidence 68999999997 799999999999984 899999999998764 23 368999999999887
Q ss_pred ----hhhhhccccCceEEEEcCCCC--CCCceEEecCCCCCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCC
Q 011556 277 ----LVSQTSRKYKKYFSYCLPSSS--SSTGHLTFGKAAGNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPI 350 (483)
Q Consensus 277 ----l~sQ~~~~~~~~FS~cL~~~~--~~~G~L~fGg~d~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~ 350 (483)
+++|.... .++||+||++.. ...|.|+|||+|++++.+++.|+|+.. ..+|.|.|++|+|+++.+.+..
T Consensus 134 ~~~~l~~qg~i~-~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~~~~ 208 (239)
T 1b5f_A 134 VWYNMLNQGLVK-ERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVTY----QYYWQFGIGDVLIGDKSTGFCA 208 (239)
T ss_dssp HHHHHHHTTCCS-SSEEEEEECCSCSSSCCEEEEETSCCGGGEEEEEEEEEEEE----ETTEEEEECCEEETTEECCTTT
T ss_pred HHHHHHHCCCCC-CCEEEEEEeCCCCCCCCeEEEECCcChhhccCceEEEEccc----CCeEEEEeeEEEECCEEecccC
Confidence 33443332 689999998753 358999999999988999999999987 5799999999999999876543
Q ss_pred cccCCCcEEEcccCccccccHHHHHHHHHHHHH
Q 011556 351 SVFSSAGAIIDSGTVITRLPPAAYSALRSTFKK 383 (483)
Q Consensus 351 ~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~ 383 (483)
.. .++||||||++++||+++|++|.+++++
T Consensus 209 ~~---~~aiiDTGTt~~~lP~~~~~~i~~~iga 238 (239)
T 1b5f_A 209 PG---CQAFADSGTSLLSGPTAIVTQINHAIGA 238 (239)
T ss_dssp TC---EEEEECTTCSSEEECHHHHHHHHHHTTC
T ss_pred CC---CEEEEecCcchhhCCHHHHHHHHHHhCC
Confidence 32 4699999999999999999999999864
No 35
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=100.00 E-value=1.7e-36 Score=291.95 Aligned_cols=219 Identities=19% Similarity=0.322 Sum_probs=175.6
Q ss_pred CccCceEEEEEEecCC-Ccc--CcceEeecCCCCCch------hhhhccc---cCceEEEEcCCCCCC--CceEEecCCC
Q 011556 244 DVFPNFLFGCGQYNRG-LYG--QAAGLLGLGQDSISL------VSQTSRK---YKKYFSYCLPSSSSS--TGHLTFGKAA 309 (483)
Q Consensus 244 ~~~~~~~FG~~~~~~g-~~~--~~~GilGLg~~~~Sl------~sQ~~~~---~~~~FS~cL~~~~~~--~G~L~fGg~d 309 (483)
.++++|.|||++...+ .|. ..+||||||++.++. +.|+..+ .+++||+||.+..+. .|+|+|||+|
T Consensus 3 ~~v~~~~Fg~~~~~~~~~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d 82 (241)
T 1lya_B 3 VKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGGTD 82 (241)
T ss_dssp EEEEEEEEEEEEECCSSTTTSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTCSSCEEEEETSCC
T ss_pred eEECCeEEEEEEEccCCccccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCCCCCcEEEECCcC
Confidence 3688999999999876 343 689999999987653 3344332 279999999986543 8999999999
Q ss_pred CCCCCCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhccCC
Q 011556 310 GNGPSKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSKYP 389 (483)
Q Consensus 310 ~~~~~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~~~ 389 (483)
++++.++++|+|+.. ..+|.|.+++|+|+++.+..... ..+||||||++++||+++|++|.+++++...
T Consensus 83 ~~~~~g~l~~~p~~~----~~~~~v~l~~i~v~~~~~~~~~~----~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~--- 151 (241)
T 1lya_B 83 SKYYKGSLSYLNVTR----KAYWQVHLDQVEVASGLTLCKEG----CEAIVDTGTSLMVGPVDEVRELQKAIGAVPL--- 151 (241)
T ss_dssp GGGEEEEEEEEECSS----BTTBEEEEEEEEETTSCEESTTC----EEEEECTTCSSEEECHHHHHHHHHHHTCEEE---
T ss_pred HHHcCCceEEEECcc----ccEEEEEEeEEEECCeeEeccCC----CEEEEECCCccccCCHHHHHHHHHHhCCeec---
Confidence 989999999999986 67999999999999987532211 4599999999999999999999999976421
Q ss_pred CCCCCCCCccceecCCCcccccCeEEEEEcCCcEEEEcCCceEEEcCC--CeEEE-EEEeCC---CCCCceEecHhhhcc
Q 011556 390 TAPALSILDTCYDFSNYTSISVPVISFFFNRGVEVSIEGSAILIGSSP--KQICL-AFAGNS---DDSDVAIIGNVQQKT 463 (483)
Q Consensus 390 ~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~--~~~Cl-~~~~~~---~~~~~~IlG~~fl~~ 463 (483)
. .+ .+..+|+ ....+|+|+|+| +|++++|++++|+++... ...|+ +|.+.+ ...+.||||++|||+
T Consensus 152 ~-~g-~~~~~C~-----~~~~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~ 223 (241)
T 1lya_B 152 I-QG-EYMIPCE-----KVSTLPAITLKL-GGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGR 223 (241)
T ss_dssp E-TT-EEEEEGG-----GGGGSCCEEEEE-TTEEEEECTTTSEEEETTTTSSEEEESEEECCCCTTTCCCEEECHHHHTT
T ss_pred c-CC-cEEEECC-----CCccCCeEEEEE-CCEEEEECHHHhEEEccCCCCCeeEEEEEecccCCCCCCeEEechHHhcc
Confidence 1 11 1233464 445799999999 789999999999998643 56899 587653 135689999999999
Q ss_pred eEEEEECCCCEEEEeeCC
Q 011556 464 LEVVYDVAQRRVGFAPKG 481 (483)
Q Consensus 464 ~~vvfD~~~~rIGFa~~~ 481 (483)
+|+|||++++|||||+++
T Consensus 224 ~y~vfD~~~~~igfA~~~ 241 (241)
T 1lya_B 224 YYTVFDRDNNRVGFAEAA 241 (241)
T ss_dssp EEEEEETTTTEEEEEEEC
T ss_pred eEEEEECCCCEEEEEEcC
Confidence 999999999999999864
No 36
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=99.88 E-value=9.4e-23 Score=167.56 Aligned_cols=90 Identities=29% Similarity=0.572 Sum_probs=80.6
Q ss_pred eeecccCCccCcceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCcc---ccccCCCCCCCCCCCCCccceecCCCcccc
Q 011556 124 TIPAKDGSVVATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCEPCL---RFCYQQKEPIYDPSASRTYANVSCSSAICD 200 (483)
Q Consensus 124 ~~p~~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C~---~~C~~~~~~~fdps~SsT~~~~~C~s~~C~ 200 (483)
.+|+. +..+.+|+++|.||||+|++.|+|||||+++||+|.+|. ..|..+ +.|||++|+||+...
T Consensus 4 ~~~l~---n~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~C~~~--~~y~p~~SsT~~~~~------- 71 (97)
T 1lya_A 4 PEVLK---NYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIH--HKYNSDKSSTYVKNG------- 71 (97)
T ss_dssp EEEEE---EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCHHHHTS--CCBCGGGCTTCEEEE-------
T ss_pred eEeeE---ECCCCeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCccCcccccCCC--CCCCchhCCCceeCC-------
Confidence 46665 346789999999999999999999999999999999996 369765 899999999999975
Q ss_pred CccCCCCCCCCCCCCCceeeEEcCCCCeEEEEEEEEEEEecC
Q 011556 201 SLESGTGMTPQCAGSTCVYGIEYGDNSFSAGFFAKETLTLTS 242 (483)
Q Consensus 201 ~~~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~~~~Dtl~l~~ 242 (483)
|.|.|.|++|+ +.|.+++|+|+|++
T Consensus 72 ----------------~~~~i~Yg~Gs-~~G~~~~Dtv~i~g 96 (97)
T 1lya_A 72 ----------------TSFDIHYGSGS-LSGYLSQDTVSVPC 96 (97)
T ss_dssp ----------------EEEEEECSSCE-EEEEEEEEEEEESC
T ss_pred ----------------CcEEEEECCcE-EEEEEEEEEEEECC
Confidence 79999999997 89999999999986
No 37
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=99.64 E-value=3.5e-16 Score=125.82 Aligned_cols=77 Identities=22% Similarity=0.351 Sum_probs=63.8
Q ss_pred CCCcccccCeEEEEEcCCcEEEEcCCceEEEcCC--CeEEE-EEEeCC--CCCCceEecHhhhcceEEEEECCCCEEEEe
Q 011556 404 SNYTSISVPVISFFFNRGVEVSIEGSAILIGSSP--KQICL-AFAGNS--DDSDVAIIGNVQQKTLEVVYDVAQRRVGFA 478 (483)
Q Consensus 404 ~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~--~~~Cl-~~~~~~--~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa 478 (483)
+|....++|+|+|+| ||++++|++++|+++... ...|+ +|.+.+ ...+.||||++|||++|+|||.+++|||||
T Consensus 6 ~C~~~~~~P~i~f~~-gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~riGfA 84 (87)
T 1b5f_B 6 DCNTLSSMPNVSFTI-GGKKFGLTPEQYILKVGKGEATQCISGFTAMDATLLGPLWILGDVFMRPYHTVFDYGNLLVGFA 84 (87)
T ss_dssp CGGGGGGCCCEEEEE-TTEEEEECHHHHEEEESCTTTCEEEESEEECCCBSSSBEEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred ECCCCCcCCcEEEEE-CCEEEEECHHHhEEEccCCCCCEEEEEEEECCCCCCCCeEEechHHhccEEEEEECCCCEEEEE
Confidence 344456799999999 789999999999988643 46899 577653 234689999999999999999999999999
Q ss_pred eCC
Q 011556 479 PKG 481 (483)
Q Consensus 479 ~~~ 481 (483)
+++
T Consensus 85 ~~~ 87 (87)
T 1b5f_B 85 EAA 87 (87)
T ss_dssp EEC
T ss_pred EcC
Confidence 864
No 38
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=92.28 E-value=0.38 Score=41.22 Aligned_cols=108 Identities=10% Similarity=0.098 Sum_probs=59.9
Q ss_pred ccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhcc-CC-CCCCCCCCccceecCCCc
Q 011556 330 SFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSK-YP-TAPALSILDTCYDFSNYT 407 (483)
Q Consensus 330 ~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~-~~-~~~~~~~~~~C~~~~~~~ 407 (483)
..+.|. +.|+|+.+. ++||||.+.+.++++..+.+--. ..... .. .+.+.... .+
T Consensus 25 ~~~~v~---v~InG~~~~----------~LvDTGAs~s~is~~~a~~lgl~--~~~~~~~~~~a~g~g~~-~~------- 81 (148)
T 2i1a_A 25 PMLYIN---IEINNYPVK----------AFVDTGAQTTIMSTRLAKKTGLS--RMIDKRFIGEARGVGTG-KI------- 81 (148)
T ss_dssp CCCEEE---EEETTEEEE----------EEECTTCSSCEEEHHHHHHHTGG--GGCBCCCC-------------------
T ss_pred ceEEEE---EEECCEEEE----------EEEECCCCccccCHHHHHHcCCC--ccCCcceEEEEecCCCc-cc-------
Confidence 345555 678988543 99999999999998877654211 00000 00 00111000 00
Q ss_pred ccccCeEEEEEcCCcEEEEcCCceEEEcCCCeEEEEEEeCCCCCCceEecHhhhcceEEEEECCCCEEEEe
Q 011556 408 SISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFA 478 (483)
Q Consensus 408 ~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa 478 (483)
........+.+ |+..+.++ +.+.+. ....|||..||+++-+..|+.+++|-|.
T Consensus 82 ~~~~~~~~i~i-g~~~~~~~--------------~~vl~~---~~d~iLG~d~L~~~~~~ID~~~~~l~l~ 134 (148)
T 2i1a_A 82 IGRIHQAQVKI-ETQYIPCS--------------FTVLDT---DIDVLIGLDMLKRHLACVDLKENVLRIA 134 (148)
T ss_dssp CEEEEEEEEEE-TTEEEEEE--------------EEEECS---SCSEEECHHHHHHTTCEEETTTTEEEET
T ss_pred ccEEEEEEEEE-CCEEecee--------------EEEecC---CCCeEecHHHHhhCCEEEECCCCEEEEc
Confidence 01122335555 45432210 112221 2348999999999999999999999885
No 39
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=90.86 E-value=0.35 Score=41.82 Aligned_cols=109 Identities=15% Similarity=0.185 Sum_probs=62.1
Q ss_pred cEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccHHHHHHHHHHHHHhhcc-CC-CCCCCCCCccceecCCCcc
Q 011556 331 FYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAYSALRSTFKKFMSK-YP-TAPALSILDTCYDFSNYTS 408 (483)
Q Consensus 331 ~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~~-~~-~~~~~~~~~~C~~~~~~~~ 408 (483)
.++|+ ..|+|+.+. ++||||.+.+.++.+..+.+--. ..... +. ...+... ..+ .
T Consensus 24 ~l~v~---~~Ing~~v~----------~LVDTGAs~s~Is~~~A~rlGL~--~~~~~~~~~~a~g~G~-~~~-------~ 80 (148)
T 3s8i_A 24 MLYIN---CKVNGHPLK----------AFVDSGAQMTIMSQACAERCNIM--RLVDRRWAGVAKGVGT-QRI-------I 80 (148)
T ss_dssp CCEEE---EEETTEEEE----------EEECTTCSSCEEEHHHHHHTTCG--GGEEGGGCEECCC----CEE-------E
T ss_pred EEEEE---EEECCEEEE----------EEEeCCCCcEeeCHHHHHHcCCc--cccCcceeEEEEcCCc-cEE-------E
Confidence 35555 558888653 99999999999999888776211 00000 00 0000000 011 0
Q ss_pred cccCeEEEEEcCCcEEEEcCCceEEEcCCCeEEEEEEeCCCCCCceEecHhhhcceEEEEECCCCEEEEee
Q 011556 409 ISVPVISFFFNRGVEVSIEGSAILIGSSPKQICLAFAGNSDDSDVAIIGNVQQKTLEVVYDVAQRRVGFAP 479 (483)
Q Consensus 409 ~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl~~~~~~~~~~~~IlG~~fl~~~~vvfD~~~~rIGFa~ 479 (483)
-.++...+.+ |+..+ .|-.++-. ......|||..||+.+-.+.|++++++-|..
T Consensus 81 g~v~~~~I~I-g~~~~---------------~~~~~Vle-~~~~d~LLGmD~L~~~~~~ID~~~~~L~l~~ 134 (148)
T 3s8i_A 81 GRVHLAQIQI-EGDFL---------------QCSFSILE-DQPMDMLLGLDMLRRHQCSIDLKKNVLVIGT 134 (148)
T ss_dssp EEEEEEEEEE-TTEEE---------------EEEEEEET-TCSSSEEECHHHHHHTTCEEETTTTEEECTT
T ss_pred EEEEEEEEEE-CCEEE---------------EEEEEEeC-CCCcCeeccHHHHHhCCEEEEcCCCEEEEcc
Confidence 1133445555 33321 13222221 2223579999999999999999999998764
No 40
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=81.37 E-value=1.4 Score=35.60 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.6
Q ss_pred EEEEEeCCCCceEEEEEEcCCCceeEeC
Q 011556 139 VVTVGIGTPKKDLSLVFDTGSDLTWTQC 166 (483)
Q Consensus 139 ~~~v~iGtP~q~~~vi~DTGS~~~Wv~~ 166 (483)
+++|.|| +|.+.+++|||.|++-+.-
T Consensus 10 ~v~v~I~--Gq~~e~LLDTGAD~TVl~~ 35 (104)
T 1fmb_A 10 TTIVLIN--DTPLNVLLDTGADTSVLTT 35 (104)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEEEH
T ss_pred EEEEEEC--CEEEEEEeccCCCcEEEcc
Confidence 5789999 8999999999999999874
No 41
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=80.54 E-value=1.5 Score=35.07 Aligned_cols=29 Identities=31% Similarity=0.331 Sum_probs=25.0
Q ss_pred EEEEEeCCCCceEEEEEEcCCCceeEeCCCc
Q 011556 139 VVTVGIGTPKKDLSLVFDTGSDLTWTQCEPC 169 (483)
Q Consensus 139 ~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C 169 (483)
+++|.|| +|.+.+++|||.|++-+.-...
T Consensus 10 ~vtvkI~--Gq~~eaLLDTGAD~TVl~~~~~ 38 (99)
T 2hs1_A 10 LVTIKIG--GQLKEALLDTGADDTIIEEMSL 38 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSEEESCCSS
T ss_pred EEEEEEC--CEEEEEEeccCCCcEEEecccC
Confidence 4789999 8999999999999999875543
No 42
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=75.02 E-value=2.6 Score=33.55 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=24.4
Q ss_pred EEEEEeCCCCceEEEEEEcCCCceeEeCCC
Q 011556 139 VVTVGIGTPKKDLSLVFDTGSDLTWTQCEP 168 (483)
Q Consensus 139 ~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~ 168 (483)
++++.|| +|.+.+++|||.|++-+....
T Consensus 10 ~vti~I~--Gq~~e~LLDTGAD~TVl~~~~ 37 (99)
T 3ec0_A 10 VVTAYIE--GQPVEVLLDTGADDSIVAGIE 37 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEESSCC
T ss_pred eEEEEEC--CEEEEEEEecCCCceEEcCcc
Confidence 5789999 899999999999999996543
No 43
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=71.92 E-value=3.3 Score=33.77 Aligned_cols=31 Identities=23% Similarity=0.376 Sum_probs=25.7
Q ss_pred EEEEEeC---CCCceEEEEEEcCCCceeEeCCCc
Q 011556 139 VVTVGIG---TPKKDLSLVFDTGSDLTWTQCEPC 169 (483)
Q Consensus 139 ~~~v~iG---tP~q~~~vi~DTGS~~~Wv~~~~C 169 (483)
.++|.|| +|+|.+..++|||-|+|-+.-..+
T Consensus 12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~~~l 45 (116)
T 3liy_A 12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPIALF 45 (116)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTBSSCEEEGGGS
T ss_pred eEEEEEccccCCCeEeEEEeccCCCccEEecccC
Confidence 4666666 789999999999999999986554
No 44
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=71.43 E-value=3.4 Score=35.05 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=26.8
Q ss_pred CcceEEEEEEeCCCCceEEEEEEcCCCceeEeC
Q 011556 134 ATGDYVVTVGIGTPKKDLSLVFDTGSDLTWTQC 166 (483)
Q Consensus 134 ~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~ 166 (483)
..+.+++++.|+ ++++.+++|||++.+-+.-
T Consensus 23 ~~~~~~v~v~In--G~~~~~LvDTGAs~s~is~ 53 (148)
T 2i1a_A 23 QVPMLYINIEIN--NYPVKAFVDTGAQTTIMST 53 (148)
T ss_dssp CCCCCEEEEEET--TEEEEEEECTTCSSCEEEH
T ss_pred ccceEEEEEEEC--CEEEEEEEECCCCccccCH
Confidence 356789999998 8899999999999988853
No 45
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=69.74 E-value=3.9 Score=33.60 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.7
Q ss_pred EEeCCCCceEEEEEEcCCCceeEeCC
Q 011556 142 VGIGTPKKDLSLVFDTGSDLTWTQCE 167 (483)
Q Consensus 142 v~iGtP~q~~~vi~DTGS~~~Wv~~~ 167 (483)
|.|| +|.+.+++|||.|++-+.-.
T Consensus 18 ikI~--Gq~~eaLLDTGAD~TVi~~~ 41 (116)
T 2hah_A 18 IFVN--GYPIKFLLDTGADITVLNRR 41 (116)
T ss_dssp EEET--TEEEEEEECTTCSSCEEEGG
T ss_pred EEEC--CEEEEEEecCCCCcEEEccc
Confidence 9999 89999999999999988754
No 46
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=63.91 E-value=6.6 Score=32.04 Aligned_cols=29 Identities=24% Similarity=0.317 Sum_probs=25.0
Q ss_pred EEEEEeCCCCceEEEEEEcCCCceeEeCCCc
Q 011556 139 VVTVGIGTPKKDLSLVFDTGSDLTWTQCEPC 169 (483)
Q Consensus 139 ~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~~C 169 (483)
.+++.|| +|.+..++|||-|++-+.-...
T Consensus 11 ~vti~I~--Gq~~eaLLDTGADdTVi~~~~l 39 (114)
T 3sqf_A 11 SLTLWLD--DKMFTGLINTGADVTIIKLEDW 39 (114)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEEEGGGS
T ss_pred eEEEEEC--CEEEEEEEccCCCceEEecccC
Confidence 4778999 8999999999999999986543
No 47
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=58.39 E-value=7.9 Score=33.09 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=26.1
Q ss_pred ceEEEEEEeCCCCceEEEEEEcCCCceeEeCC
Q 011556 136 GDYVVTVGIGTPKKDLSLVFDTGSDLTWTQCE 167 (483)
Q Consensus 136 ~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~ 167 (483)
..|++++.|. ++++++++|||+..+.+.-.
T Consensus 23 ~~l~v~~~In--g~~v~~LVDTGAs~s~Is~~ 52 (148)
T 3s8i_A 23 TMLYINCKVN--GHPLKAFVDSGAQMTIMSQA 52 (148)
T ss_dssp CCCEEEEEET--TEEEEEEECTTCSSCEEEHH
T ss_pred CEEEEEEEEC--CEEEEEEEeCCCCcEeeCHH
Confidence 4688999998 89999999999999988543
No 48
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=49.61 E-value=14 Score=28.98 Aligned_cols=33 Identities=21% Similarity=0.480 Sum_probs=23.6
Q ss_pred CccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccHH
Q 011556 329 SSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPA 372 (483)
Q Consensus 329 ~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~ 372 (483)
...|.++ |.||. |+..|. ++||||+..+++|..
T Consensus 12 ~~~Y~~~---i~iGT-----P~Q~~~---v~~DTGSs~lWv~~~ 44 (97)
T 1lya_A 12 DAQYYGE---IGIGT-----PPQCFT---VVFDTGSSNLWVPSI 44 (97)
T ss_dssp TTEEEEE---EEETT-----TTEEEE---EEEETTCCCEEEEBT
T ss_pred CCeEEEE---EEECC-----CCeEEE---EEEeCCCCceEEeEc
Confidence 4567665 77773 233344 999999999999965
No 49
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=48.15 E-value=15 Score=30.72 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=24.1
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCC
Q 011556 138 YVVTVGIGTPKKDLSLVFDTGSDLTWTQCE 167 (483)
Q Consensus 138 Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~ 167 (483)
-++++.|+ +|.+.+++|||.+.+-+.-.
T Consensus 23 P~v~i~I~--G~~~~~LlDTGAd~tVl~~~ 50 (132)
T 3slz_A 23 PRITLKVG--GQPVTFLVDTGAQHSVLTQN 50 (132)
T ss_dssp SEEEEEET--TEEEEEEECTTCSSCEECSC
T ss_pred CEEEEEEC--CEEEEEEEeCCCCeEEEccc
Confidence 35789999 89999999999999988754
No 50
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=47.05 E-value=14 Score=30.52 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=19.9
Q ss_pred eCCCCceEEEEEEcCCCceeEeCCCc
Q 011556 144 IGTPKKDLSLVFDTGSDLTWTQCEPC 169 (483)
Q Consensus 144 iGtP~q~~~vi~DTGS~~~Wv~~~~C 169 (483)
|| +|.+.+++|||-|++-+.-...
T Consensus 27 i~--gq~~eaLLDTGAD~TVl~~~~l 50 (124)
T 2rsp_A 27 QR--SVYITALLDSGADITIISEEDW 50 (124)
T ss_dssp CS--EEEEEEEECTTCSSCEEETTTS
T ss_pred CC--CEEEEEEecCCCCcEEEecccC
Confidence 55 6888999999999999986543
No 51
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=45.55 E-value=16 Score=32.90 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=23.5
Q ss_pred EEEEEeCCCCceEEEEEEcCCCceeEeC
Q 011556 139 VVTVGIGTPKKDLSLVFDTGSDLTWTQC 166 (483)
Q Consensus 139 ~~~v~iGtP~q~~~vi~DTGS~~~Wv~~ 166 (483)
.++|.|| +|.+.+++|||.|++-+.-
T Consensus 10 ~vtv~I~--Gq~~e~LLDTGAD~TVl~~ 35 (203)
T 3ka2_A 10 LVTIRIG--GQLKEALLDTGADDTVIEE 35 (203)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEECS
T ss_pred eEEEEEC--CEEEEEEEecCCCceEEec
Confidence 6889999 8999999999999998864
No 52
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=40.03 E-value=21 Score=34.21 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=28.9
Q ss_pred CCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccHHH
Q 011556 315 KTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAA 373 (483)
Q Consensus 315 ~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~ 373 (483)
+.+...|+.. ...|.++ |+||.+. |. ++||||++.+++|..-
T Consensus 4 g~v~~~~~~~----~~~Y~~~---i~iG~Q~-------~~---v~~DTGSs~lWv~~~~ 45 (323)
T 1bxo_A 4 GVATNTPTAN----DEEYITP---VTIGGTT-------LN---LNFDTGSADLWVFSTE 45 (323)
T ss_dssp EEEEEEECGG----GSCEEEE---EEETTEE-------EE---EEEETTCCCEEECBTT
T ss_pred CceeeeecCC----CCEEEEE---EEECCEE-------EE---EEEeCCCcceEEecCC
Confidence 3445556544 4567665 7788443 33 9999999999999754
No 53
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=38.40 E-value=24 Score=33.89 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=27.9
Q ss_pred ceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccHHHH
Q 011556 317 IKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAY 374 (483)
Q Consensus 317 ~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y 374 (483)
+.-+|+.. ...|.++ |+||.+. |. ++||||++.+++|..-.
T Consensus 5 v~~~~~~~----~~~Y~~~---i~iG~Q~-------~~---v~~DTGSs~lWv~~~~C 45 (325)
T 1ibq_A 5 AVTTPQNN----DEEYLTP---VTVGKST-------LH---LDFDTGSADLWVFSDEL 45 (325)
T ss_dssp EEEEECTT----TSCEEEE---EEEBTEE-------EE---EEEETTCCCEEEECTTS
T ss_pred EEeEEcCC----CCEEEEE---EEECCEE-------EE---EEEeCCCccceEeeCCC
Confidence 44455443 5567766 7788443 33 99999999999997543
No 54
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=37.72 E-value=25 Score=33.81 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=29.0
Q ss_pred CCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccHHHH
Q 011556 315 KTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAAY 374 (483)
Q Consensus 315 ~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~y 374 (483)
+.+...|+.. ...|.++ |+||.+. |. ++||||++.+++|..-.
T Consensus 4 ~~v~~~~~~~----~~~Y~~~---i~iG~q~-------~~---v~~DTGSs~lWv~~~~C 46 (323)
T 1izd_A 4 GSVTTNPTSN----DEEYITQ---VTVGDDT-------LG---LDFDTGSADLWVFSSQT 46 (323)
T ss_dssp EEEEEEECGG----GCCEEEE---EEETTEE-------EE---EEEETTCCCEEECBTTS
T ss_pred CceeeeEcCC----CCEEEEE---EEECCEE-------EE---EEEcCCCcceEEecCCC
Confidence 3444556543 4567665 7788443 33 99999999999997543
No 55
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=30.76 E-value=40 Score=32.72 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=30.6
Q ss_pred CCCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccHH
Q 011556 314 SKTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPA 372 (483)
Q Consensus 314 ~~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~ 372 (483)
.+.+...|+... ....|.++ |+||. |+..|. ++||||++.+++|..
T Consensus 4 ~g~~~~~~l~~~--~~~~Y~~~---i~iGt-----P~q~~~---v~~DTGSs~~Wv~~~ 49 (361)
T 1mpp_A 4 DGSVDTPGLYDF--DLEEYAIP---VSIGT-----PGQDFY---LLFDTGSSDTWVPHK 49 (361)
T ss_dssp -CCEEEEEEEET--TTTEEEEE---EEETT-----TTEEEE---EEEETTCCCCEEEBT
T ss_pred CCccceEEeecC--CCCEEEEE---EEECC-----CCcEEE---EEEcCCCCCeEECCC
Confidence 355666777652 24567665 77883 222333 999999999999965
No 56
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=26.98 E-value=50 Score=31.60 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=23.7
Q ss_pred CccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccHH
Q 011556 329 SSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPA 372 (483)
Q Consensus 329 ~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~ 372 (483)
...|.++ |.||. |+..|. ++||||++.+++|..
T Consensus 14 ~~~Y~~~---i~iGT-----P~Q~~~---v~~DTGSs~lWv~~~ 46 (329)
T 1oew_A 14 DDAYITP---VQIGT-----PAQTLN---LDFDTGSSDLWVFSS 46 (329)
T ss_dssp CCCEEEE---EEETT-----TTEEEE---EEEETTCCCEEECBT
T ss_pred CCEEEEE---EEECC-----CCeEEE---EEECCCCCCeEEecC
Confidence 5567665 77883 223333 999999999999965
No 57
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=26.64 E-value=51 Score=29.63 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=23.8
Q ss_pred EEEEEeCCCCceEEEEEEcCCCceeEeCC
Q 011556 139 VVTVGIGTPKKDLSLVFDTGSDLTWTQCE 167 (483)
Q Consensus 139 ~~~v~iGtP~q~~~vi~DTGS~~~Wv~~~ 167 (483)
.+++.|| +|.+..++|||.|++-+...
T Consensus 114 ~~~iki~--Gq~~e~LlDTGAD~TVl~~~ 140 (203)
T 3ka2_A 114 LVTIRIG--GQLKEALLDTGADDTVIEEL 140 (203)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEECSC
T ss_pred cEEEEEC--CEEEeeeecccCCceeeecc
Confidence 5889999 79999999999999988644
No 58
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=26.40 E-value=47 Score=31.67 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=28.2
Q ss_pred ceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccHH
Q 011556 317 IKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPA 372 (483)
Q Consensus 317 ~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~ 372 (483)
....||... ....|.++ |+||. |+..|. ++||||++.+++|..
T Consensus 3 ~~~~~l~n~--~~~~Y~~~---i~iGt-----P~q~~~---v~~DTGSs~~Wv~~~ 45 (323)
T 3cms_A 3 VASVPLTNY--LDSQYFGK---IYLGT-----PPQEFT---VLFDTGSSDFWVPSI 45 (323)
T ss_dssp CEEEEEEEE--TTTEEEEE---EEETT-----TTEEEE---EEEETTCCCEEEEBT
T ss_pred cceeeeEec--cCCEEEEE---EEECC-----CCeEEE---EEEeCCccceEEcCC
Confidence 344565542 24567665 77874 233344 999999999999865
No 59
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=25.46 E-value=56 Score=31.27 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=24.2
Q ss_pred CccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccHHH
Q 011556 329 SSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPAA 373 (483)
Q Consensus 329 ~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~~ 373 (483)
...|.++ |+||. |+..|. ++||||++.+++|..-
T Consensus 14 ~~~Y~~~---i~iGT-----P~Q~~~---v~~DTGSs~lWv~~~~ 47 (329)
T 3c9x_A 14 DSEYITS---VSIGT-----PAQVLP---LDFDTGSSDLWVFSSE 47 (329)
T ss_dssp CCCEEEE---EEETT-----TTEEEE---EEEETTCCCEEECBTT
T ss_pred CCEEEEE---EEECC-----CCeEEE---EEEcCCCCCeEEecCC
Confidence 4567665 77883 223343 9999999999999754
No 60
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=23.88 E-value=62 Score=30.88 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=23.5
Q ss_pred CccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccHH
Q 011556 329 SSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPA 372 (483)
Q Consensus 329 ~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~ 372 (483)
...|.++ |+||. |+..|. ++||||++.+++|..
T Consensus 14 ~~~Y~~~---i~iGT-----P~q~~~---v~~DTGSs~lWv~~~ 46 (325)
T 2apr_A 14 DIEYYGQ---VTIGT-----PGKKFN---LDFDTGSSDLWIAST 46 (325)
T ss_dssp TTEEEEE---EEETT-----TTEEEE---EEEETTCCCCEEEBT
T ss_pred CCEEEEE---EEECC-----CCeEEE---EEEcCCCCCEEEccC
Confidence 5567665 77883 222333 999999999999864
No 61
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=22.71 E-value=69 Score=31.91 Aligned_cols=45 Identities=11% Similarity=0.164 Sum_probs=31.4
Q ss_pred CCceeeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccH
Q 011556 315 KTIKFTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPP 371 (483)
Q Consensus 315 ~~~~~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~ 371 (483)
..-...|+..+.. ...|.++ |+||. |+..|. ++||||+.++|+|-
T Consensus 6 ~~~~~~pv~~d~~-~~~Y~~~---i~iGT-----Ppq~~~---v~~DTGS~~lWv~c 50 (413)
T 3vla_A 6 PSALVVPVKKDAS-TLQYVTT---INQRT-----PLVSEN---LVVDLGGRFLWVDC 50 (413)
T ss_dssp CSEEEEEEEECTT-TCCEEEE---EEETT-----TTEEEE---EEEETTCSSEEEEC
T ss_pred CccEEEEeeecCC-CCeEEEE---EEcCC-----CCcceE---EEEeCCChhhhccc
Confidence 3445578877653 5567666 66774 344454 99999999999985
No 62
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=22.33 E-value=62 Score=31.03 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=22.9
Q ss_pred CccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccH
Q 011556 329 SSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPP 371 (483)
Q Consensus 329 ~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~ 371 (483)
...|.++ |+||. |+..|. ++||||++.+|+|.
T Consensus 11 ~~~Y~~~---i~iGT-----P~q~~~---v~~DTGSs~lWv~~ 42 (340)
T 1wkr_A 11 LVDYVVN---VGVGS-----PATTYS---LLVDTGSSNTWLGA 42 (340)
T ss_dssp SSCEEEE---EEETT-----TTEEEE---EEEETTCCCCEECS
T ss_pred CcEEEEE---EEECC-----CCcEEE---EEEeCCChhheecC
Confidence 3467666 77873 233343 99999999999985
No 63
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=22.20 E-value=62 Score=32.01 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=28.0
Q ss_pred eeeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccHH
Q 011556 319 FTPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPA 372 (483)
Q Consensus 319 ~tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~ 372 (483)
..|+..+. ....|.++ |.||. |+..|. ++||||+..+|+|..
T Consensus 11 ~~pl~~~~-~~~~Y~~~---i~iGT-----P~Q~~~---v~~DTGSs~lWv~~~ 52 (403)
T 3aup_A 11 VLPVQNDG-STGLHWAN---LQKRT-----PLMQVP---VLVDLNGNHLWVNCE 52 (403)
T ss_dssp EEEEEECT-TTCCEEEE---EEETT-----TTEEEE---EEEETTCSSEEEECS
T ss_pred EEeeecCC-CCceEEEE---EECCC-----CCceeE---EEEECCCCceeECCC
Confidence 35666432 24567665 67773 233344 999999999999854
No 64
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=21.74 E-value=49 Score=31.76 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=22.9
Q ss_pred CccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccHH
Q 011556 329 SSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPA 372 (483)
Q Consensus 329 ~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~ 372 (483)
...|.++ |+||.+. |. ++||||++.+++|..
T Consensus 16 ~~~Y~~~---i~iG~Q~-------~~---v~~DTGSs~lWv~~~ 46 (330)
T 1yg9_A 16 NTQYAGI---TKIGNQN-------FL---TVFDSTSCNVVVASQ 46 (330)
T ss_dssp CTTSEEE---EEETTEE-------EE---EEEETTCCCEEEECT
T ss_pred CCEEEEE---EEECCEE-------EE---EEEeCCCcceEEecC
Confidence 3457665 7788443 33 999999999999864
No 65
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=21.74 E-value=63 Score=29.38 Aligned_cols=33 Identities=24% Similarity=0.540 Sum_probs=23.3
Q ss_pred CccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccHH
Q 011556 329 SSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPA 372 (483)
Q Consensus 329 ~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~ 372 (483)
...|.++ |+||. |+..|. ++||||++.+++|..
T Consensus 12 ~~~Y~~~---i~iGt-----P~q~~~---v~~DTGSs~lWv~~~ 44 (239)
T 1b5f_A 12 DTSYFGE---IGIGT-----PPQKFT---VIFDTGSSVLWVPSS 44 (239)
T ss_dssp TTEEEEE---EEETT-----TTEEEE---EEEETTCCCEEEEBT
T ss_pred CCEEEEE---EEECC-----CCeEEE---EEEeCCCcceEEEcC
Confidence 4457665 67873 233344 999999999999854
No 66
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=21.58 E-value=61 Score=31.04 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=23.5
Q ss_pred CccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccHH
Q 011556 329 SSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPA 372 (483)
Q Consensus 329 ~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~ 372 (483)
...|.++ |.||. |+..|. ++||||++.+++|..
T Consensus 11 ~~~Y~~~---i~iGt-----P~q~~~---v~~DTGSs~~Wv~~~ 43 (334)
T 1j71_A 11 GPSYAAD---IVVGS-----NQQKQT---VVIDTGSSDLWVVDT 43 (334)
T ss_dssp SSSEEEE---EEETT-----TTEEEE---EEEETTCCCEEEEEE
T ss_pred CcEEEEE---EEEcC-----CCcEEE---EEEcCCCCCEEEecC
Confidence 4567776 77773 233344 999999999999843
No 67
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=21.39 E-value=62 Score=30.98 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=26.2
Q ss_pred eeCccCCCCCccEEEEEeEEEECceecccCCcccCCCcEEEcccCccccccHH
Q 011556 320 TPLSTATADSSFYGLDIIGLSVGGKKLPIPISVFSSAGAIIDSGTVITRLPPA 372 (483)
Q Consensus 320 tpl~~~~~~~~~y~v~l~gisVgg~~l~~~~~~f~~~~~iiDSGT~~t~Lp~~ 372 (483)
.|+.. ...+|.++ |+||. |+..|. ++||||++.+++|..
T Consensus 5 ~~l~~---~~~~Y~~~---i~iGt-----P~Q~~~---v~~DTGSs~~Wv~~~ 43 (339)
T 3fv3_A 5 LSLIN---EGPSYASK---VSVGS-----NKQQQT---VIIDTGSSDFWVVDS 43 (339)
T ss_dssp EEEEE---CSSSEEEE---EEETT-----TTEEEE---EEEETTCCCEEEEEE
T ss_pred eEEEc---CCCEEEEE---EEEcC-----CCcEEE---EEEeCCCCceEEecC
Confidence 45554 24567776 67773 223333 999999999999854
No 68
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=21.35 E-value=53 Score=27.91 Aligned_cols=55 Identities=18% Similarity=0.220 Sum_probs=15.8
Q ss_pred ChhhHHHHHHHHHHHHHHhhcccccccccccccccccceEEEecCCcCCCCCCCCCcccCCCceEEEEEcC
Q 011556 1 MALLRILLFACVLSLRLLCSLEEGLAFEETETAESQHDTRTIQPSSLLPSSICDTSTKANERKATLKVVHK 71 (483)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~hr 71 (483)
|++.|++|+. |+.|+++. .+ +..+.......-.-|+++...= .+..++.+.|.+.
T Consensus 1 m~~~~~~l~~-la~l~~~s--~a--~p~~~~~sk~PLTtHVLDt~~G-----------~PA~gv~V~L~~~ 55 (147)
T 4ank_A 1 MASHRLLLLC-LAGLVFVS--EA--GPTGTGESKCPLMVKVLDAVRG-----------SPAINVAVHVFRK 55 (147)
T ss_dssp ----------------------------------CCEEEEEEETTTT-----------EECCSCEEEEEEE
T ss_pred CchHHHHHHH-HHHHHhhc--cc--CCcCCCCCCCCeEEEEEeCCCC-----------cCCCCCEEEEEEE
Confidence 8888887776 44433222 11 1111111233445588876542 2345788888765
Done!