BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011558
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Amp
pdb|2V92|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Atp-Amp
pdb|2V9J|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Mg.Atp-Amp
pdb|2Y8L|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Two Adp
pdb|2Y8Q|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With One Adp
pdb|2Y94|E Chain E, Structure Of An Active Form Of Mammalian Ampk
pdb|2YA3|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Coumarin Adp
pdb|4EAG|C Chain C, Co-Crystal Structure Of An Chimeric Ampk Core With Atp
pdb|4EAI|C Chain C, Co-Crystal Structure Of An Ampk Core With Amp
pdb|4EAJ|C Chain C, Co-Crystal Of Ampk Core With Amp Soaked With Atp
pdb|4EAK|C Chain C, Co-Crystal Structure Of An Ampk Core With Atp
pdb|4EAL|C Chain C, Co-Crystal Of Ampk Core With Atp Soaked With Amp
Length = 330
Score = 141 bits (355), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 104/333 (31%), Positives = 165/333 (49%), Gaps = 39/333 (11%)
Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
++F+ +H Y+L+P S K+ D +L VK+AF L G+ PLWD K FVG+L+
Sbjct: 29 TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88
Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 268
DFI IL + + ELE H I W+ LQ + K PLV P
Sbjct: 89 DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 135
Query: 269 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ 328
SL + +++NK+ +P+I +G+ IL + LK F +
Sbjct: 136 SLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FMS 189
Query: 329 QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIY 388
+ + +Q+GT+ AN AM+R T + AL + VQ VS++P+VD+ ++DIY
Sbjct: 190 KSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY 240
Query: 389 SRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMER 448
S+ D+ LA +K Y + ++++ +ALQ + S F G C + L ++ R
Sbjct: 241 SKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLEAIINR 290
Query: 449 LANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
L V RLV+V+ V+GI+SLSD+ + L+
Sbjct: 291 LVEAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322
>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|E Chain E, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
Length = 333
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 165/334 (49%), Gaps = 34/334 (10%)
Query: 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 207
I +F+ + T Y++LP S ++ DV L VK + +L + PLWD +F G+L+
Sbjct: 14 IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 73
Query: 208 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
DF+ +++ S+ E + ++ K +L R+++ P + P
Sbjct: 74 ADFVNVIKYY-YQSSSFPE--------AIAEIDKFRLLGLREVERKIGAIPPETIYVHPM 124
Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 327
SL + L + +++ +P+I G GS + I+ + + ILK I + K ++ +L
Sbjct: 125 HSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCKETA----ML 179
Query: 328 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 387
+ P++ + +GTW A + + +L + ++S++PIV+ +LL++
Sbjct: 180 RVPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNV 230
Query: 388 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 447
Y D+ L +D Y+ + ++++ +AL L + AN F+G C +D L + +
Sbjct: 231 YESVDVMHLIQDGDYSNL---DLSVGEAL-LKRPAN----FDG--VHTCRATDRLDGIFD 280
Query: 448 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
+ + V RL +V+ K +EGI+SL+D+ +++
Sbjct: 281 AIKHSRVHRLFVVDENLK-LEGILSLADILNYII 313
>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 334
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 165/334 (49%), Gaps = 34/334 (10%)
Query: 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 207
I +F+ + T Y++LP S ++ DV L VK + +L + PLWD +F G+L+
Sbjct: 15 IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 74
Query: 208 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
DF+ +++ S+ E + ++ K +L R+++ P + P
Sbjct: 75 ADFVNVIKYY-YQSSSFPE--------AIAEIDKFRLLGLREVERKIGAIPPETIYVHPM 125
Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 327
SL + L + +++ +P+I G GS + I+ + + ILK I + K ++ +L
Sbjct: 126 HSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCKETA----ML 180
Query: 328 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 387
+ P++ + +GTW A + + +L + ++S++PIV+ +LL++
Sbjct: 181 RVPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNV 231
Query: 388 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 447
Y D+ L +D Y+ + ++++ +AL L + AN F+G C +D L + +
Sbjct: 232 YESVDVMHLIQDGDYSNL---DLSVGEAL-LKRPAN----FDG--VHTCRATDRLDGIFD 281
Query: 448 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
+ + V RL +V+ K +EGI+SL+D+ +++
Sbjct: 282 AIKHSRVHRLFVVDENLK-LEGILSLADILNYII 314
>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 323
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 167/354 (47%), Gaps = 65/354 (18%)
Query: 142 QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRF 201
QL+ + I FL++ T Y++LP S ++ LD +L VK++ +VL + + PLWD RF
Sbjct: 17 QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 76
Query: 202 VGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL----NLKR-----QMDG 252
G+L+ DFI +++ +N EL V KLQL +++R Q+D
Sbjct: 77 AGLLTTTDFINVIQYYFSNPDKF---EL---------VDKLQLDGLKDIERALGVDQLDT 124
Query: 253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312
RPL +A LK+L+++ +P+I + ++ + + ILK
Sbjct: 125 ASIHPSRPLFEA---------CLKMLESRSGRIPLIDQDEETHR-EIVVSVLTQYRILKF 174
Query: 313 I---CR--HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 367
+ CR HF L+ P+ + + I + N + M P + + +L
Sbjct: 175 VALNCRETHF---------LKIPIGDLNI------ITQDNMKSCQMTTPVIDV---IQML 216
Query: 368 VQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG 427
Q VSS+PI+D+N L+++Y D+ L K Y + L ++ +AL D
Sbjct: 217 TQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL---SVGEALMRRSD-----D 268
Query: 428 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
F G C ++D L +M+ + V R +V+ R+ G+++LSD+ +++L
Sbjct: 269 FEG--VYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 319
>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 315
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 167/354 (47%), Gaps = 65/354 (18%)
Query: 142 QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRF 201
QL+ + I FL++ T Y++LP S ++ LD +L VK++ +VL + + PLWD RF
Sbjct: 10 QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 69
Query: 202 VGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL----NLKR-----QMDG 252
G+L+ DFI +++ +N EL V KLQL +++R Q+D
Sbjct: 70 AGLLTTTDFINVIQYYFSNPDKF---EL---------VDKLQLDGLKDIERALGVDQLDT 117
Query: 253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312
RPL +A LK+L+++ +P+I + ++ + + ILK
Sbjct: 118 ASIHPSRPLFEA---------CLKMLESRSGRIPLIDQDEETHR-EIVVSVLTQYRILKF 167
Query: 313 I---CR--HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 367
+ CR HF L+ P+ + + I + N + M P + + +L
Sbjct: 168 VALNCRETHF---------LKIPIGDLNI------ITQDNMKSCQMTTPVIDV---IQML 209
Query: 368 VQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG 427
Q VSS+PI+D+N L+++Y D+ L K Y + L ++ +AL D
Sbjct: 210 TQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL---SVGEALMRRSD-----D 261
Query: 428 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
F G C ++D L +M+ + V R +V+ R+ G+++LSD+ +++L
Sbjct: 262 FEG--VYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 312
>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
Length = 96
Score = 77.0 bits (188), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 5/86 (5%)
Query: 22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
P F W GG+ V LSGSF WS+ +P++ S+ F I LP G HQYKF+VDG+W
Sbjct: 12 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 67
Query: 82 HDENQPHVSGNYGVVNCVYIAVPQPD 107
HD ++P V+ G VN + I V + D
Sbjct: 68 HDPSEPIVTSQLGTVNNI-IQVKKTD 92
>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
Length = 96
Score = 75.9 bits (185), Expect = 5e-14, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
P F W GG+ V LSGSF WS+ +P + S+ F I LP G HQYKF+VDG+W
Sbjct: 12 PTVFRWTGGGKEVYLSGSFNNWSK-LPXTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 67
Query: 82 HDENQPHVSGNYGVVNCVYIAVPQPD 107
HD ++P V+ G VN + I V + D
Sbjct: 68 HDPSEPIVTSQLGTVNNI-IQVKKTD 92
>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta2 Subunit
Length = 96
Score = 72.8 bits (177), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
P W GG+ V +SGSF WS +P+ S F I LP G HQYKF+VDG+W
Sbjct: 11 PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHN---DFVAILDLPEGEHQYKFFVDGQWV 67
Query: 82 HDENQPHVSGNYGVVN 97
HD ++P V+ G +N
Sbjct: 68 HDPSEPVVTSQLGTIN 83
>pdb|2UV4|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
pdb|2UV5|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 72.0 bits (175), Expect = 6e-13, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 86/155 (55%), Gaps = 20/155 (12%)
Query: 327 LQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLD 386
+ + + +Q+GT+ AN AM+R T + AL + VQ VS++P+VD+ ++D
Sbjct: 16 MSKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVD 66
Query: 387 IYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVM 446
IYS+ D+ LA +K Y + ++++ +ALQ + S F G C + L ++
Sbjct: 67 IYSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETII 116
Query: 447 ERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
RL V RLV+V+ + V+GI+SLSD+ + L+
Sbjct: 117 NRLVEAEVHRLVVVDE-NDVVKGIVSLSDILQALV 150
>pdb|2UV6|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 70.1 bits (170), Expect = 2e-12, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 86/155 (55%), Gaps = 20/155 (12%)
Query: 327 LQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLD 386
+ + + +Q+GT+ AN AM+R T + AL + VQ VS++P+VD+ ++D
Sbjct: 16 MSKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVD 66
Query: 387 IYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVM 446
IYS+ D+ LA +K Y + ++++ +ALQ + S F G C + L ++
Sbjct: 67 IYSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETII 116
Query: 447 ERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
RL V +LV+V+ + V+GI+SLSD+ + L+
Sbjct: 117 NRLVEAEVHQLVVVDE-NDVVKGIVSLSDILQALV 150
>pdb|2UV7|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 68.9 bits (167), Expect = 6e-12, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 85/155 (54%), Gaps = 20/155 (12%)
Query: 327 LQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLD 386
+ + + +Q+GT+ AN AM+R T + AL + VQ VS++P+VD+ ++D
Sbjct: 16 MSKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVD 66
Query: 387 IYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVM 446
IYS+ D+ LA +K Y + ++++ +ALQ + S F G C + L ++
Sbjct: 67 IYSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETII 116
Query: 447 ERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481
RL V LV+V+ + V+GI+SLSD+ + L+
Sbjct: 117 NRLVEAEVHGLVVVDE-NDVVKGIVSLSDILQALV 150
>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|E Chain E, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 252
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
Query: 18 SILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77
S++VPV W GG +V ++GSFT+W + + + P F + RL PG H+++F VD
Sbjct: 1 SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60
Query: 78 GEWRHDENQPHVSGNYG-VVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQY 136
E R + P + G VN YI V QP+ P E + E D MRP +
Sbjct: 61 NELRVSDFLPTATDQMGNFVN--YIEVRQPEKNPTN---EKIRSKEADS--MRPPTSDRS 113
Query: 137 SEADLQLSRD 146
S A LQ+ +D
Sbjct: 114 SIA-LQIGKD 122
>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 14/139 (10%)
Query: 343 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY 402
I + N + M P + + +L Q VSS+PI+D+N L+++Y D+ L K Y
Sbjct: 16 ITQDNMKSCQMTTPVIDV---IQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIY 72
Query: 403 AQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA 462
+ L ++ +AL D F G C ++D L +M+ + V R +V+
Sbjct: 73 NDLSL---SVGEALMRRSD-----DFEG--VYTCTKNDKLSTIMDNIRKARVHRFFVVD- 121
Query: 463 GSKRVEGIISLSDVFRFLL 481
R+ G+++LSD+ +++L
Sbjct: 122 DVGRLVGVLTLSDILKYIL 140
>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
pdb|2NYE|B Chain B, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
Query: 357 TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL 416
T + + L Q VSS+PI+D+N L+++Y D+ L K Y + L ++ +AL
Sbjct: 27 TTPVIDVIQXLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL---SVGEAL 83
Query: 417 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDV 476
D F G C ++D L + + + V R +V+ R+ G+++LSD+
Sbjct: 84 XRRSD-----DFEG--VYTCTKNDKLSTIXDNIRKARVHRFFVVD-DVGRLVGVLTLSDI 135
Query: 477 FRFLL 481
+++L
Sbjct: 136 LKYIL 140
>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase
pdb|3NME|B Chain B, Structure Of A Plant Phosphatase
Length = 294
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 29 NGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEWRHDENQP 87
G RV +SG W + +P++ +G F I+ R LP G +YK+ +DGEW H+E +P
Sbjct: 179 KGFSRVEISGLDIGWGQRIPLTLGKGTG--FWILKRELPEGQFEYKYIIDGEWTHNEAEP 236
Query: 88 HVSGNY-GVVNCVYIAVPQPDMVPNTISPETS 118
+ N G N V P V T S
Sbjct: 237 FIGPNKDGHTNNYAKVVDDPTSVDGTTRERLS 268
>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|B Chain B, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|C Chain C, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|D Chain D, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
Length = 165
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395
+ T+V + + GR + P S+G A L + ++ + D + +L I++ D+
Sbjct: 22 MATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLV- 80
Query: 396 LAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVR 455
KA A A L Q + ++ N RCQ +D L ++M G
Sbjct: 81 ----KAVAG--------QGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIM----TGGRF 124
Query: 456 RLVIVEAGSKRVEGIISLSDVFRFLLG 482
R V VE + R+ GIIS+ DV + +G
Sbjct: 125 RHVPVEE-NGRLAGIISIGDVVKARIG 150
>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
pdb|3SL7|B Chain B, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
Length = 180
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 353 MLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 396
+++P+ S+ AL LLV+ V+ +P++DDN +L+ + S D+ AL
Sbjct: 18 VVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLAL 61
>pdb|3ZF7|XX Chain x, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 276
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 276 KILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 335
K ++++ V P G+ L +S L+ + R + ++ L ++ V I+
Sbjct: 116 KARRDRLTKVAEEKKKNPKGTVSTKAPLCVVSG-LQEVTRTIEKKTARLVLIANNVDPIE 174
Query: 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRS 391
L W+P + AN P+A+++ A LG A+ V+ + ++ + L +RS
Sbjct: 175 LVLWMPTLCRANKIPYAIVKDKARLGDAIGRKTATCVAFTDVNAEDQAALKNLTRS 230
>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop
Deletion) From Arabidopsis Thaliana
Length = 152
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 337 GTWVPRIGE--ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT 394
G+ V +GE +++PT ++ AL LLV+ ++ P++D++ L+ + S D+
Sbjct: 1 GSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLL 60
Query: 395 AL 396
AL
Sbjct: 61 AL 62
>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From
Arabidopsis Thaliana
Length = 166
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 337 GTWVPRIGE--ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT 394
G+ V +GE +++PT ++ AL LLV+ ++ P++D++ L+ + S D+
Sbjct: 1 GSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLL 60
Query: 395 AL 396
AL
Sbjct: 61 AL 62
>pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
pdb|2EF7|B Chain B, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
Length = 133
Score = 32.3 bits (72), Expect = 0.62, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 399
+R + + ALAL Q ++ +P+VDD +L I S DIT D
Sbjct: 80 IREDSPITGALALXRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD 125
>pdb|3L2B|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With Activator, Diadenosine
Tetraphosphate
pdb|3L2B|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With Activator, Diadenosine
Tetraphosphate
Length = 245
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 351 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 399
A L P SL A ++ ++ SIP+ D N+ LL + S S+ITA D
Sbjct: 17 IAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMD 65
>pdb|3L31|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With The Inhibitor, Amp
pdb|3L31|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With The Inhibitor, Amp
Length = 252
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 351 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 399
A L P SL A ++ ++ SIP+ D N+ LL + S S+ITA D
Sbjct: 14 IAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMD 62
>pdb|2YZQ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 282
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 187 GLPMVPLWDDFKGRFVGVLSALDFIL---ILREL-GTNGSNLTEEE--LETHTISAWKVG 240
LP+V D +G VG++ D + I+R + T + +EEE LE+H ++
Sbjct: 159 ALPVV----DSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKF 214
Query: 241 KLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEI 300
+LQL K R ++ A P+ ++ EVALK+ + + +P+I G ++
Sbjct: 215 ELQLPNK----PVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEG------DL 264
Query: 301 LYLASLSDILKCICR 315
+ L D+LK + +
Sbjct: 265 IGLIRDFDLLKVLVK 279
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 19/113 (16%)
Query: 176 VKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS 235
+K + G +P+ + GR VG++++ DFI +L GS+ ++T +
Sbjct: 167 LKDVARTMVRNGFRRLPVVSE--GRLVGIITSTDFIKLL------GSDWAFNHMQTGNVR 218
Query: 236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPII 288
+++ +KR ++ A D LK++A ++ N + +P++
Sbjct: 219 EITNVRMEEIMKRD-----------VITAKEGDKLKKIAEIMVTNDIGALPVV 260
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 19/139 (13%)
Query: 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH 316
R ++ A P + LK+VA +++N +P++ G + + +D +K +
Sbjct: 154 ITRDVIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVG-------IITSTDFIKLLGSD 206
Query: 317 --FKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSS 374
F H + +++ T V R+ E R + L ++V D+ +
Sbjct: 207 WAFNHMQTG---------NVREITNV-RMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGA 256
Query: 375 IPIVDDNDSLLDIYSRSDI 393
+P+VD+N + I + D+
Sbjct: 257 LPVVDENLRIKGIITEKDV 275
>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x
pdb|4EIP|B Chain B, Native And K252c Bound Rebc-10x
pdb|4EIQ|A Chain A, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
pdb|4EIQ|B Chain B, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
Length = 549
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 286 PIIHSTGPAG-----SCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 340
P +H GP G + E L + HF H+ S + +P + + G W
Sbjct: 388 PGLHDDGPRGERIRAAVAEKLERSGARREFDAPGIHFGHTYRSSIVCGEPETEVATGGWR 447
Query: 341 PRIGEANGRPFAMLRPTAS 359
P P A L PT S
Sbjct: 448 PSARPGARAPHAWLTPTTS 466
>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin
Biosynthetic Enzyme Rebc
pdb|2R0G|A Chain A, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0G|B Chain B, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0P|A Chain A, K252c-Soaked Rebc
pdb|3EPT|A Chain A, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
pdb|3EPT|B Chain B, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
Length = 549
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 286 PIIHSTGPAG-----SCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 340
P +H GP G + E L + HF H+ S + +P + + G W
Sbjct: 388 PGLHDDGPRGERIRAAVAEKLERSGARREFDAPGIHFGHTYRSSIVCGEPETEVATGGWR 447
Query: 341 PRIGEANGRPFAMLRPTAS 359
P P A L PT S
Sbjct: 448 PSARPGARAPHAWLTPTTS 466
>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 122
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 59/125 (47%), Gaps = 24/125 (19%)
Query: 359 SLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNIHQALQ 417
S+ A +L++ +++ +PIVD++ L+ I + DI ALA++K ++E+ +
Sbjct: 19 SIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKT----IEEIMTRNVIT 74
Query: 418 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF 477
+D +P+ V +++ + + +V+ +RV GI++ D+
Sbjct: 75 AHED------------------EPVDHVAIKMSKYNISGVPVVD-DYRRVVGIVTSEDIS 115
Query: 478 RFLLG 482
R G
Sbjct: 116 RLFGG 120
>pdb|2P9M|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|B Chain B, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|C Chain C, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|D Chain D, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
Length = 138
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 15/108 (13%)
Query: 372 VSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG 430
+SS+P++DD + ++ I + +DI L +DK + + ++ + + +DA+
Sbjct: 39 ISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVXTKDVITIHEDAS------- 91
Query: 431 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478
++ + E + N +L +V+ +K V GIIS D+ R
Sbjct: 92 --ILEAIKKXDISGKKEEIIN----QLPVVDKNNKLV-GIISDGDIIR 132
>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 124
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 59/125 (47%), Gaps = 24/125 (19%)
Query: 359 SLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNIHQALQ 417
S+ A +L++ +++ +PIVD++ L+ I + DI ALA++K ++E+ +
Sbjct: 21 SIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKT----IEEIMTRNVIT 76
Query: 418 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF 477
+D +P+ V +++ + + +V+ +RV GI++ D+
Sbjct: 77 AHED------------------EPVDHVAIKMSKYNISGVPVVD-DYRRVVGIVTSEDIS 117
Query: 478 RFLLG 482
R G
Sbjct: 118 RLFGG 122
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 383 SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ 414
+ D YS SD+TALAKD A I E+N+ Q
Sbjct: 219 KITDGYSGSDLTALAKDAALEPIR--ELNVEQ 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,311,840
Number of Sequences: 62578
Number of extensions: 665706
Number of successful extensions: 1377
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1314
Number of HSP's gapped (non-prelim): 41
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)