Query 011558
Match_columns 483
No_of_seqs 557 out of 4072
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 02:42:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1764 5'-AMP-activated prote 100.0 1.2E-35 2.6E-40 297.4 26.2 303 144-481 55-359 (381)
2 cd02859 AMPKbeta_GBD_like AMP- 99.9 3.1E-25 6.7E-30 172.9 10.2 79 20-101 1-79 (79)
3 cd02861 E_set_proteins_like E 99.8 6.6E-19 1.4E-23 138.7 9.3 77 21-100 2-81 (82)
4 COG2524 Predicted transcriptio 99.7 2E-17 4.2E-22 150.8 13.0 123 340-483 171-293 (294)
5 KOG1616 Protein involved in Sn 99.7 7.9E-17 1.7E-21 155.6 9.5 90 16-106 75-164 (289)
6 cd04641 CBS_pair_28 The CBS do 99.6 1.1E-14 2.3E-19 123.4 15.1 119 350-479 2-120 (120)
7 COG2524 Predicted transcriptio 99.6 2.7E-15 5.8E-20 137.0 11.7 116 255-398 176-291 (294)
8 COG3448 CBS-domain-containing 99.6 7.9E-15 1.7E-19 136.1 14.2 173 200-398 199-372 (382)
9 COG3448 CBS-domain-containing 99.6 2.8E-15 6.2E-20 139.1 10.1 128 342-482 246-373 (382)
10 COG3620 Predicted transcriptio 99.6 1.1E-14 2.4E-19 123.3 11.3 119 343-482 67-185 (187)
11 cd04618 CBS_pair_5 The CBS dom 99.6 5.1E-14 1.1E-18 115.0 11.7 95 350-479 2-98 (98)
12 cd04603 CBS_pair_KefB_assoc Th 99.5 8.4E-14 1.8E-18 116.3 13.0 110 350-479 2-111 (111)
13 cd04619 CBS_pair_6 The CBS dom 99.5 1.4E-13 3E-18 115.5 14.3 111 351-478 3-113 (114)
14 PRK10892 D-arabinose 5-phospha 99.5 1.7E-13 3.7E-18 137.0 14.5 120 341-479 202-323 (326)
15 cd04617 CBS_pair_4 The CBS dom 99.5 3.5E-13 7.6E-18 113.7 14.2 112 350-478 2-117 (118)
16 cd04593 CBS_pair_EriC_assoc_ba 99.5 4.2E-13 9.2E-18 112.5 14.4 112 350-479 2-115 (115)
17 cd04630 CBS_pair_17 The CBS do 99.5 4.3E-13 9.3E-18 112.4 14.3 112 350-479 2-114 (114)
18 cd04618 CBS_pair_5 The CBS dom 99.5 1.9E-13 4.1E-18 111.6 11.4 97 165-311 1-97 (98)
19 cd04608 CBS_pair_PALP_assoc Th 99.5 1.6E-13 3.5E-18 117.1 10.8 113 350-480 3-124 (124)
20 cd04600 CBS_pair_HPP_assoc Thi 99.5 6E-13 1.3E-17 113.1 13.7 117 349-479 2-124 (124)
21 PRK11543 gutQ D-arabinose 5-ph 99.5 4.1E-13 8.9E-18 134.0 14.3 120 341-479 197-318 (321)
22 cd04623 CBS_pair_10 The CBS do 99.5 1.2E-12 2.7E-17 108.9 14.8 112 350-479 2-113 (113)
23 cd04614 CBS_pair_1 The CBS dom 99.5 5.3E-13 1.1E-17 108.5 11.7 95 350-479 2-96 (96)
24 cd04803 CBS_pair_15 The CBS do 99.5 1.4E-12 3E-17 110.5 13.8 116 350-479 2-122 (122)
25 cd04642 CBS_pair_29 The CBS do 99.5 8.7E-13 1.9E-17 112.7 12.6 121 350-478 2-125 (126)
26 cd04605 CBS_pair_MET2_assoc Th 99.5 2.5E-12 5.5E-17 106.7 15.0 108 349-478 2-109 (110)
27 COG2905 Predicted signal-trans 99.5 4.1E-13 8.8E-18 135.5 11.9 121 341-481 149-270 (610)
28 cd04607 CBS_pair_NTP_transfera 99.4 2.3E-12 5E-17 107.7 14.3 109 351-478 4-112 (113)
29 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 1.9E-12 4.1E-17 106.7 13.5 104 350-478 2-105 (106)
30 cd04624 CBS_pair_11 The CBS do 99.4 3.1E-12 6.8E-17 106.5 14.7 110 350-478 2-111 (112)
31 cd04639 CBS_pair_26 The CBS do 99.4 1.8E-12 3.8E-17 107.8 13.1 109 350-478 2-110 (111)
32 cd04627 CBS_pair_14 The CBS do 99.4 1.7E-12 3.6E-17 110.4 13.2 119 350-477 2-121 (123)
33 cd04631 CBS_pair_18 The CBS do 99.4 1.6E-12 3.6E-17 110.5 13.1 116 350-479 2-125 (125)
34 cd04626 CBS_pair_13 The CBS do 99.4 2.7E-12 5.8E-17 106.9 14.0 109 350-478 2-110 (111)
35 cd04801 CBS_pair_M50_like This 99.4 1.4E-12 3.1E-17 109.1 12.4 111 350-478 2-113 (114)
36 cd04629 CBS_pair_16 The CBS do 99.4 1.7E-12 3.8E-17 108.4 12.6 113 350-479 2-114 (114)
37 cd04641 CBS_pair_28 The CBS do 99.4 2.3E-12 5.1E-17 109.0 13.4 118 260-395 2-119 (120)
38 cd04643 CBS_pair_30 The CBS do 99.4 2.7E-12 5.9E-17 107.5 13.7 114 350-479 2-116 (116)
39 cd04615 CBS_pair_2 The CBS dom 99.4 3.3E-12 7.2E-17 106.5 14.1 110 351-478 3-112 (113)
40 cd04621 CBS_pair_8 The CBS dom 99.4 3.1E-12 6.8E-17 110.9 14.3 114 350-478 2-134 (135)
41 PRK15094 magnesium/cobalt effl 99.4 2.1E-12 4.5E-17 126.2 14.5 120 342-482 68-190 (292)
42 PRK07807 inosine 5-monophospha 99.4 1.7E-12 3.7E-17 134.3 14.6 116 342-481 90-205 (479)
43 cd04632 CBS_pair_19 The CBS do 99.4 3.2E-12 6.9E-17 109.4 13.9 116 350-478 2-127 (128)
44 cd04636 CBS_pair_23 The CBS do 99.4 2.9E-12 6.3E-17 110.4 13.7 126 350-479 2-132 (132)
45 cd04596 CBS_pair_DRTGG_assoc T 99.4 2.3E-12 5.1E-17 106.8 12.5 105 350-478 3-107 (108)
46 cd04635 CBS_pair_22 The CBS do 99.4 2.2E-12 4.7E-17 109.2 12.6 116 350-479 2-122 (122)
47 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 3.8E-12 8.3E-17 106.1 13.9 111 350-478 2-113 (114)
48 COG3620 Predicted transcriptio 99.4 1.3E-12 2.9E-17 110.8 10.7 116 255-398 69-184 (187)
49 cd04588 CBS_pair_CAP-ED_DUF294 99.4 5.8E-12 1.3E-16 104.5 14.4 108 350-478 2-109 (110)
50 cd04589 CBS_pair_CAP-ED_DUF294 99.4 6.4E-12 1.4E-16 104.5 14.3 110 350-479 2-111 (111)
51 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 6.8E-12 1.5E-16 103.8 14.3 106 350-478 3-108 (109)
52 cd04590 CBS_pair_CorC_HlyC_ass 99.4 6.6E-12 1.4E-16 104.4 14.2 108 350-478 2-110 (111)
53 cd04586 CBS_pair_BON_assoc Thi 99.4 2.9E-12 6.3E-17 110.8 12.3 116 349-479 2-135 (135)
54 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 5.1E-12 1.1E-16 105.5 13.2 111 350-478 3-113 (114)
55 PRK05567 inosine 5'-monophosph 99.4 1.5E-11 3.2E-16 129.0 19.6 221 190-479 41-265 (486)
56 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 6.5E-12 1.4E-16 104.2 13.7 109 350-478 2-110 (111)
57 cd04800 CBS_pair_CAP-ED_DUF294 99.4 8.5E-12 1.8E-16 103.7 14.3 109 350-478 2-110 (111)
58 cd04595 CBS_pair_DHH_polyA_Pol 99.4 9.4E-12 2E-16 103.3 14.5 108 349-478 2-109 (110)
59 cd04627 CBS_pair_14 The CBS do 99.4 5.3E-12 1.1E-16 107.3 13.2 121 260-395 2-122 (123)
60 PRK14869 putative manganese-de 99.4 1.9E-12 4.1E-17 138.3 12.9 288 155-478 68-390 (546)
61 cd04640 CBS_pair_27 The CBS do 99.4 3.9E-12 8.5E-17 108.7 12.4 112 350-478 2-125 (126)
62 cd04620 CBS_pair_7 The CBS dom 99.4 7.3E-12 1.6E-16 104.9 13.8 110 350-478 2-114 (115)
63 cd04603 CBS_pair_KefB_assoc Th 99.4 5.3E-12 1.1E-16 105.3 12.6 108 261-395 3-110 (111)
64 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 1.1E-11 2.4E-16 102.9 14.4 109 350-478 2-110 (111)
65 PRK14869 putative manganese-de 99.4 1.5E-11 3.2E-16 131.5 19.2 194 256-480 73-303 (546)
66 cd04587 CBS_pair_CAP-ED_DUF294 99.4 7E-12 1.5E-16 104.5 13.2 111 350-478 2-112 (113)
67 PRK01862 putative voltage-gate 99.4 4E-12 8.8E-17 136.5 14.7 123 342-481 448-571 (574)
68 cd04633 CBS_pair_20 The CBS do 99.4 6.3E-12 1.4E-16 106.2 12.7 114 350-479 2-121 (121)
69 cd04622 CBS_pair_9 The CBS dom 99.4 1E-11 2.2E-16 103.6 13.7 110 350-478 2-112 (113)
70 cd04619 CBS_pair_6 The CBS dom 99.4 8.7E-12 1.9E-16 104.5 13.3 111 261-395 3-113 (114)
71 cd04585 CBS_pair_ACT_assoc2 Th 99.4 9.5E-12 2.1E-16 105.0 13.4 114 350-478 2-121 (122)
72 cd04625 CBS_pair_12 The CBS do 99.4 1.4E-11 3.1E-16 102.5 14.3 111 350-479 2-112 (112)
73 TIGR00400 mgtE Mg2+ transporte 99.4 4.9E-12 1.1E-16 131.4 13.3 172 248-479 128-304 (449)
74 cd04600 CBS_pair_HPP_assoc Thi 99.4 1E-11 2.2E-16 105.4 12.7 122 259-395 2-123 (124)
75 cd04602 CBS_pair_IMPDH_2 This 99.4 1.7E-11 3.7E-16 102.7 13.7 106 350-478 3-113 (114)
76 cd04617 CBS_pair_4 The CBS dom 99.4 9.6E-12 2.1E-16 104.9 12.1 111 260-395 2-117 (118)
77 cd04601 CBS_pair_IMPDH This cd 99.4 1.1E-11 2.3E-16 102.7 12.1 106 350-478 3-109 (110)
78 cd04802 CBS_pair_3 The CBS dom 99.4 3E-11 6.5E-16 100.6 14.8 110 350-478 2-111 (112)
79 TIGR03520 GldE gliding motilit 99.3 1.3E-11 2.7E-16 126.5 14.8 118 342-482 192-312 (408)
80 cd04630 CBS_pair_17 The CBS do 99.3 2.1E-11 4.6E-16 102.0 13.7 112 260-395 2-113 (114)
81 cd04606 CBS_pair_Mg_transporte 99.3 9.3E-12 2E-16 103.3 11.4 103 354-480 2-109 (109)
82 cd04609 CBS_pair_PALP_assoc2 T 99.3 1.9E-11 4.2E-16 101.1 13.1 109 350-479 2-110 (110)
83 cd04599 CBS_pair_GGDEF_assoc2 99.3 3.1E-11 6.7E-16 99.2 13.2 103 350-478 2-104 (105)
84 cd04637 CBS_pair_24 The CBS do 99.3 2.7E-11 5.8E-16 102.6 13.2 115 350-479 2-122 (122)
85 KOG1764 5'-AMP-activated prote 99.3 1.1E-10 2.4E-15 117.6 19.5 195 167-398 164-359 (381)
86 cd04610 CBS_pair_ParBc_assoc T 99.3 2.8E-11 6E-16 99.8 12.6 105 349-478 2-106 (107)
87 cd04584 CBS_pair_ACT_assoc Thi 99.3 3.5E-11 7.5E-16 101.6 13.4 114 350-478 2-120 (121)
88 cd04605 CBS_pair_MET2_assoc Th 99.3 3.7E-11 8E-16 99.7 13.3 108 259-395 2-109 (110)
89 cd04594 CBS_pair_EriC_assoc_ar 99.3 3E-11 6.5E-16 99.4 12.6 100 352-478 4-103 (104)
90 PRK07107 inosine 5-monophospha 99.3 1.3E-11 2.9E-16 128.5 12.9 107 351-479 107-218 (502)
91 cd04607 CBS_pair_NTP_transfera 99.3 3.7E-11 8E-16 100.3 13.2 109 261-395 4-112 (113)
92 COG0517 FOG: CBS domain [Gener 99.3 6.3E-11 1.4E-15 99.3 14.4 111 347-477 5-117 (117)
93 cd04614 CBS_pair_1 The CBS dom 99.3 2.9E-11 6.3E-16 98.2 11.9 94 260-395 2-95 (96)
94 cd02205 CBS_pair The CBS domai 99.3 5.3E-11 1.2E-15 98.2 13.8 111 350-478 2-112 (113)
95 cd04624 CBS_pair_11 The CBS do 99.3 4.9E-11 1.1E-15 99.3 13.4 110 260-395 2-111 (112)
96 PLN02274 inosine-5'-monophosph 99.3 3.2E-11 7E-16 125.8 14.6 112 347-481 106-222 (505)
97 TIGR01302 IMP_dehydrog inosine 99.3 2.8E-11 6E-16 125.6 14.1 114 344-480 83-200 (450)
98 PRK07807 inosine 5-monophospha 99.3 9.7E-11 2.1E-15 121.4 18.0 206 189-466 43-251 (479)
99 cd04582 CBS_pair_ABC_OpuCA_ass 99.3 5.2E-11 1.1E-15 98.0 13.0 104 260-395 2-105 (106)
100 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 2.8E-11 6E-16 125.3 13.9 114 343-481 90-203 (475)
101 cd04623 CBS_pair_10 The CBS do 99.3 6.8E-11 1.5E-15 98.3 13.6 111 260-395 2-112 (113)
102 cd04639 CBS_pair_26 The CBS do 99.3 4.7E-11 1E-15 99.2 12.5 109 260-395 2-110 (111)
103 TIGR00393 kpsF KpsF/GutQ famil 99.3 2.8E-11 6E-16 117.6 12.7 113 341-472 155-268 (268)
104 PRK05567 inosine 5'-monophosph 99.3 3.4E-11 7.4E-16 126.2 14.1 115 343-480 89-204 (486)
105 cd04803 CBS_pair_15 The CBS do 99.3 5.1E-11 1.1E-15 100.8 12.6 120 260-395 2-121 (122)
106 cd04643 CBS_pair_30 The CBS do 99.3 4.6E-11 9.9E-16 100.0 12.1 114 260-395 2-115 (116)
107 cd04608 CBS_pair_PALP_assoc Th 99.3 1.9E-11 4.1E-16 104.3 9.5 113 259-396 2-123 (124)
108 COG4109 Predicted transcriptio 99.3 2.2E-11 4.7E-16 116.2 10.6 115 342-480 189-305 (432)
109 cd04634 CBS_pair_21 The CBS do 99.3 1E-10 2.2E-15 102.4 14.3 126 350-478 2-142 (143)
110 cd04642 CBS_pair_29 The CBS do 99.3 6.4E-11 1.4E-15 101.1 12.7 124 260-395 2-125 (126)
111 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 2.9E-10 6.4E-15 117.7 19.9 111 257-399 94-204 (475)
112 TIGR00400 mgtE Mg2+ transporte 99.3 3.7E-11 8E-16 124.9 13.3 116 342-481 132-252 (449)
113 cd04593 CBS_pair_EriC_assoc_ba 99.3 9.1E-11 2E-15 98.2 13.2 111 260-395 2-114 (115)
114 cd04801 CBS_pair_M50_like This 99.3 4.2E-11 9.1E-16 100.1 11.1 109 260-395 2-113 (114)
115 cd04598 CBS_pair_GGDEF_assoc T 99.3 1.2E-10 2.6E-15 98.0 13.2 113 350-478 2-118 (119)
116 cd04631 CBS_pair_18 The CBS do 99.3 9.7E-11 2.1E-15 99.5 12.7 123 260-395 2-124 (125)
117 cd04596 CBS_pair_DRTGG_assoc T 99.3 9.4E-11 2E-15 97.1 12.2 105 260-395 3-107 (108)
118 cd04629 CBS_pair_16 The CBS do 99.2 7.6E-11 1.7E-15 98.4 11.7 112 260-395 2-113 (114)
119 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 1.2E-10 2.6E-15 97.0 12.9 111 260-395 3-113 (114)
120 cd04591 CBS_pair_EriC_assoc_eu 99.2 1.1E-10 2.5E-15 96.3 12.5 100 350-479 3-105 (105)
121 cd04626 CBS_pair_13 The CBS do 99.2 1.1E-10 2.3E-15 97.1 12.3 109 260-395 2-110 (111)
122 cd04615 CBS_pair_2 The CBS dom 99.2 1.4E-10 3E-15 96.6 12.8 110 261-395 3-112 (113)
123 cd04583 CBS_pair_ABC_OpuCA_ass 99.2 1.7E-10 3.6E-15 95.3 13.2 106 260-395 3-108 (109)
124 cd04585 CBS_pair_ACT_assoc2 Th 99.2 1.5E-10 3.3E-15 97.5 13.1 120 260-395 2-121 (122)
125 cd04590 CBS_pair_CorC_HlyC_ass 99.2 1.6E-10 3.5E-15 95.9 12.8 109 260-395 2-110 (111)
126 cd04620 CBS_pair_7 The CBS dom 99.2 1.6E-10 3.5E-15 96.7 12.8 110 260-395 2-114 (115)
127 cd04586 CBS_pair_BON_assoc Thi 99.2 8.5E-11 1.8E-15 101.6 11.4 128 259-395 2-134 (135)
128 cd04800 CBS_pair_CAP-ED_DUF294 99.2 1.5E-10 3.2E-15 96.1 12.5 109 260-395 2-110 (111)
129 cd02858 Esterase_N_term Estera 99.2 5.1E-11 1.1E-15 94.2 8.9 75 22-99 7-83 (85)
130 PRK11543 gutQ D-arabinose 5-ph 99.2 1.1E-10 2.4E-15 116.5 13.5 114 256-395 202-317 (321)
131 cd04621 CBS_pair_8 The CBS dom 99.2 1.7E-10 3.7E-15 100.0 12.9 129 260-395 2-134 (135)
132 PTZ00314 inosine-5'-monophosph 99.2 9.5E-11 2.1E-15 122.4 13.3 113 345-480 100-217 (495)
133 cd04636 CBS_pair_23 The CBS do 99.2 1.5E-10 3.2E-15 99.7 12.4 125 260-395 2-131 (132)
134 TIGR01137 cysta_beta cystathio 99.2 1.5E-10 3.2E-15 121.2 14.8 118 342-480 336-453 (454)
135 cd04638 CBS_pair_25 The CBS do 99.2 2.6E-10 5.7E-15 93.9 13.2 104 350-478 2-105 (106)
136 cd04588 CBS_pair_CAP-ED_DUF294 99.2 3.1E-10 6.8E-15 94.0 13.5 108 260-395 2-109 (110)
137 cd04611 CBS_pair_PAS_GGDEF_DUF 99.2 3.1E-10 6.7E-15 94.1 13.4 109 260-395 2-110 (111)
138 cd04595 CBS_pair_DHH_polyA_Pol 99.2 2.8E-10 6.2E-15 94.3 13.1 108 259-395 2-109 (110)
139 cd04613 CBS_pair_SpoIVFB_EriC_ 99.2 2.1E-10 4.5E-15 95.5 12.3 111 260-395 2-113 (114)
140 cd04635 CBS_pair_22 The CBS do 99.2 1.8E-10 4E-15 97.3 11.8 120 260-395 2-121 (122)
141 PRK10892 D-arabinose 5-phospha 99.2 1.7E-10 3.7E-15 115.4 13.5 114 256-395 207-322 (326)
142 cd04587 CBS_pair_CAP-ED_DUF294 99.2 3E-10 6.4E-15 94.6 12.8 111 260-395 2-112 (113)
143 cd04632 CBS_pair_19 The CBS do 99.2 2.4E-10 5.2E-15 97.7 12.4 124 260-395 2-127 (128)
144 PRK07107 inosine 5-monophospha 99.2 2E-10 4.2E-15 119.8 14.1 110 262-397 108-219 (502)
145 cd04633 CBS_pair_20 The CBS do 99.2 2.5E-10 5.4E-15 96.3 11.8 119 260-395 2-120 (121)
146 COG0517 FOG: CBS domain [Gener 99.2 4.6E-10 9.9E-15 94.0 13.2 110 258-394 6-117 (117)
147 cd04622 CBS_pair_9 The CBS dom 99.2 4.3E-10 9.3E-15 93.6 12.9 111 260-395 2-112 (113)
148 cd04612 CBS_pair_SpoIVFB_EriC_ 99.2 4.9E-10 1.1E-14 92.9 13.2 109 260-395 2-110 (111)
149 cd04625 CBS_pair_12 The CBS do 99.2 5.4E-10 1.2E-14 92.9 13.4 110 260-395 2-111 (112)
150 PRK15094 magnesium/cobalt effl 99.2 9.4E-10 2E-14 107.6 17.0 164 152-367 64-227 (292)
151 cd04602 CBS_pair_IMPDH_2 This 99.2 4.6E-10 9.9E-15 93.9 12.7 109 260-395 3-113 (114)
152 TIGR03520 GldE gliding motilit 99.2 8.8E-10 1.9E-14 113.0 17.2 162 152-368 188-349 (408)
153 cd04637 CBS_pair_24 The CBS do 99.2 4.5E-10 9.8E-15 95.0 12.5 120 260-395 2-121 (122)
154 cd04802 CBS_pair_3 The CBS dom 99.2 7.5E-10 1.6E-14 92.1 13.6 110 260-395 2-111 (112)
155 COG2905 Predicted signal-trans 99.2 1.6E-10 3.6E-15 116.9 11.0 118 256-399 154-271 (610)
156 cd04640 CBS_pair_27 The CBS do 99.2 3.7E-10 8.1E-15 96.3 11.7 115 260-395 2-125 (126)
157 cd04601 CBS_pair_IMPDH This cd 99.1 5.4E-10 1.2E-14 92.4 11.8 106 260-395 3-109 (110)
158 cd02205 CBS_pair The CBS domai 99.1 1E-09 2.2E-14 90.4 13.4 111 260-395 2-112 (113)
159 cd04589 CBS_pair_CAP-ED_DUF294 99.1 1E-09 2.2E-14 91.1 13.4 109 260-395 2-110 (111)
160 PLN02274 inosine-5'-monophosph 99.1 6.3E-10 1.4E-14 116.3 14.4 115 257-398 106-222 (505)
161 cd04609 CBS_pair_PALP_assoc2 T 99.1 8.1E-10 1.7E-14 91.3 12.2 108 260-395 2-109 (110)
162 cd04599 CBS_pair_GGDEF_assoc2 99.1 1E-09 2.2E-14 90.0 12.6 102 260-394 2-103 (105)
163 TIGR01302 IMP_dehydrog inosine 99.1 1.6E-09 3.5E-14 112.5 16.8 165 189-398 33-201 (450)
164 cd04592 CBS_pair_EriC_assoc_eu 99.1 7.4E-10 1.6E-14 95.7 12.0 109 350-462 2-117 (133)
165 cd04606 CBS_pair_Mg_transporte 99.1 7.6E-10 1.7E-14 91.7 11.1 102 264-396 2-108 (109)
166 PTZ00314 inosine-5'-monophosph 99.1 1.8E-09 3.9E-14 112.8 16.5 114 257-397 102-217 (495)
167 cd04584 CBS_pair_ACT_assoc Thi 99.1 1.2E-09 2.6E-14 92.1 12.2 119 260-395 2-120 (121)
168 cd04634 CBS_pair_21 The CBS do 99.1 1.4E-09 3.1E-14 95.0 13.0 126 260-395 2-142 (143)
169 cd04610 CBS_pair_ParBc_assoc T 99.1 1.8E-09 3.9E-14 88.9 12.8 105 259-395 2-106 (107)
170 PRK11573 hypothetical protein; 99.1 1.5E-09 3.2E-14 111.3 14.6 122 342-482 188-312 (413)
171 cd04594 CBS_pair_EriC_assoc_ar 99.1 1.6E-09 3.5E-14 89.0 12.0 100 262-395 4-103 (104)
172 COG2239 MgtE Mg/Co/Ni transpor 99.1 1.4E-09 3.1E-14 111.0 13.4 122 247-399 128-254 (451)
173 cd04591 CBS_pair_EriC_assoc_eu 99.1 2.7E-09 5.9E-14 88.0 12.0 102 260-395 3-104 (105)
174 PRK01862 putative voltage-gate 99.0 2.2E-09 4.7E-14 115.4 13.5 118 256-398 452-571 (574)
175 TIGR00393 kpsF KpsF/GutQ famil 99.0 2.8E-09 6.1E-14 103.5 12.2 108 256-389 160-268 (268)
176 cd04598 CBS_pair_GGDEF_assoc T 99.0 3.6E-09 7.7E-14 89.0 11.1 113 260-395 2-118 (119)
177 COG1253 TlyC Hemolysins and re 99.0 6.4E-09 1.4E-13 107.6 13.7 119 343-482 208-329 (429)
178 COG4109 Predicted transcriptio 99.0 5.3E-09 1.1E-13 100.1 11.6 110 258-398 197-306 (432)
179 COG2239 MgtE Mg/Co/Ni transpor 98.9 6.6E-09 1.4E-13 106.1 11.3 117 340-480 131-252 (451)
180 cd04638 CBS_pair_25 The CBS do 98.9 2.3E-08 5E-13 82.2 12.5 104 260-395 2-105 (106)
181 cd04592 CBS_pair_EriC_assoc_eu 98.9 1.3E-08 2.9E-13 87.8 11.1 113 260-381 2-118 (133)
182 PRK11573 hypothetical protein; 98.9 5.9E-08 1.3E-12 99.6 17.2 166 152-367 184-349 (413)
183 PF00571 CBS: CBS domain CBS d 98.9 5.6E-09 1.2E-13 75.8 6.7 54 428-482 4-57 (57)
184 PF00571 CBS: CBS domain CBS d 98.9 5.9E-09 1.3E-13 75.7 6.5 56 343-398 1-56 (57)
185 TIGR01137 cysta_beta cystathio 98.9 2.4E-08 5.1E-13 104.6 13.4 114 256-397 340-453 (454)
186 cd02688 E_set E or "early" set 98.7 4.3E-08 9.4E-13 76.8 8.1 74 22-97 5-80 (83)
187 KOG2550 IMP dehydrogenase/GMP 98.6 5.6E-07 1.2E-11 88.0 14.2 167 185-396 57-226 (503)
188 TIGR01186 proV glycine betaine 98.6 4.7E-07 1E-11 91.2 14.3 111 348-482 249-359 (363)
189 COG4535 CorC Putative Mg2+ and 98.6 1.1E-07 2.4E-12 86.4 8.6 120 342-482 68-190 (293)
190 PRK10070 glycine betaine trans 98.6 6.6E-07 1.4E-11 91.3 13.7 105 354-482 290-394 (400)
191 COG1253 TlyC Hemolysins and re 98.6 1.8E-06 4E-11 89.4 16.9 136 145-317 194-331 (429)
192 cd02854 Glycogen_branching_enz 98.5 4.5E-07 9.7E-12 73.7 8.1 66 23-90 7-86 (99)
193 COG4536 CorB Putative Mg2+ and 98.5 9.7E-07 2.1E-11 85.8 10.5 121 342-482 201-325 (423)
194 KOG0474 Cl- channel CLC-7 and 98.4 4.5E-07 9.7E-12 93.1 7.4 135 342-479 583-745 (762)
195 COG4536 CorB Putative Mg2+ and 98.4 4.4E-06 9.4E-11 81.4 13.3 131 153-318 198-328 (423)
196 COG4535 CorC Putative Mg2+ and 98.4 2E-06 4.2E-11 78.4 9.9 118 255-399 73-190 (293)
197 KOG2550 IMP dehydrogenase/GMP 98.3 1.2E-06 2.5E-11 85.9 7.3 107 350-479 117-226 (503)
198 TIGR01186 proV glycine betaine 98.3 1.4E-05 3E-10 80.7 13.9 108 262-400 253-360 (363)
199 PF02922 CBM_48: Carbohydrate- 98.2 6E-07 1.3E-11 70.9 2.7 57 22-80 12-74 (85)
200 PRK10070 glycine betaine trans 98.1 2.8E-05 6.2E-10 79.4 12.8 105 264-399 290-394 (400)
201 cd04597 CBS_pair_DRTGG_assoc2 97.9 1.9E-05 4.1E-10 66.0 6.1 54 342-395 59-112 (113)
202 cd05808 CBM20_alpha_amylase Al 97.9 6.3E-05 1.4E-09 60.7 8.2 54 21-76 1-63 (95)
203 smart00116 CBS Domain in cysta 97.8 5.7E-05 1.2E-09 51.5 5.9 47 433-480 2-48 (49)
204 PF00686 CBM_20: Starch bindin 97.8 5.1E-05 1.1E-09 61.4 5.7 56 21-76 2-68 (96)
205 cd04597 CBS_pair_DRTGG_assoc2 97.7 7.3E-05 1.6E-09 62.4 6.4 50 428-478 63-112 (113)
206 cd02860 Pullulanase_N_term Pul 97.7 9.2E-05 2E-09 60.4 6.8 64 23-90 10-85 (100)
207 KOG0474 Cl- channel CLC-7 and 97.7 6.4E-05 1.4E-09 77.7 6.7 141 255-396 586-745 (762)
208 smart00116 CBS Domain in cysta 97.6 0.00024 5.2E-09 48.3 6.2 47 351-397 2-48 (49)
209 cd05818 CBM20_water_dikinase P 97.5 0.00047 1E-08 55.2 8.3 53 21-76 2-61 (92)
210 cd05820 CBM20_novamyl Novamyl 97.5 0.00085 1.8E-08 55.0 9.7 64 20-85 2-84 (103)
211 cd05809 CBM20_beta_amylase Bet 97.5 0.00089 1.9E-08 54.5 9.1 57 20-76 2-68 (99)
212 COG0296 GlgB 1,4-alpha-glucan 97.5 0.00022 4.9E-09 75.6 6.8 66 21-88 36-109 (628)
213 cd02855 Glycogen_branching_enz 97.5 0.00079 1.7E-08 55.3 8.8 64 27-91 28-97 (106)
214 KOG0475 Cl- channel CLC-3 and 97.5 0.001 2.2E-08 69.1 11.3 127 351-480 558-694 (696)
215 cd05814 CBM20_Prei4 Prei4, N-t 97.4 0.00086 1.9E-08 56.6 8.2 55 23-77 3-67 (120)
216 cd02856 Glycogen_debranching_e 97.4 0.00064 1.4E-08 55.7 7.0 54 23-80 11-68 (103)
217 PLN02447 1,4-alpha-glucan-bran 97.2 0.00086 1.9E-08 73.1 7.5 63 23-88 116-192 (758)
218 cd05811 CBM20_glucoamylase Glu 97.1 0.0031 6.7E-08 51.9 8.6 59 18-76 4-73 (106)
219 PRK12568 glycogen branching en 97.1 0.0012 2.5E-08 71.9 7.6 65 22-89 139-211 (730)
220 KOG0475 Cl- channel CLC-3 and 97.0 0.0086 1.9E-07 62.5 12.3 134 260-398 557-695 (696)
221 PRK12313 glycogen branching en 97.0 0.0019 4.1E-08 70.4 7.8 67 22-90 39-112 (633)
222 cd05807 CBM20_CGTase CGTase, C 97.0 0.0049 1.1E-07 50.3 8.3 57 20-76 2-70 (101)
223 cd05813 CBM20_genethonin_1 Gen 96.9 0.0027 5.9E-08 51.1 6.6 54 21-76 1-62 (95)
224 KOG0476 Cl- channel CLC-2 and 96.8 0.0032 7E-08 66.7 7.6 62 337-398 584-647 (931)
225 PRK14705 glycogen branching en 96.8 0.0025 5.5E-08 73.0 6.8 62 22-85 639-708 (1224)
226 PRK14706 glycogen branching en 96.7 0.0034 7.4E-08 68.0 7.4 65 22-89 39-111 (639)
227 cd02852 Isoamylase_N_term Isoa 96.7 0.0048 1E-07 52.0 6.9 60 23-84 9-76 (119)
228 cd05816 CBM20_DPE2_repeat2 Dis 96.7 0.014 3.1E-07 47.4 9.3 45 30-76 13-64 (99)
229 TIGR03415 ABC_choXWV_ATP choli 96.7 0.0065 1.4E-07 61.8 8.8 107 342-482 275-381 (382)
230 cd05817 CBM20_DSP Dual-specifi 96.7 0.0085 1.8E-07 48.8 7.7 45 30-76 12-62 (100)
231 cd05810 CBM20_alpha_MTH Glucan 96.6 0.016 3.4E-07 46.9 8.8 54 21-76 1-64 (97)
232 cd05467 CBM20 The family 20 ca 96.6 0.0077 1.7E-07 48.4 6.9 47 29-76 11-65 (96)
233 PRK05402 glycogen branching en 96.5 0.0059 1.3E-07 67.6 7.6 65 22-87 132-203 (726)
234 COG4175 ProV ABC-type proline/ 96.5 0.0046 1E-07 59.8 5.5 154 269-482 224-384 (386)
235 cd02853 MTHase_N_term Maltooli 96.4 0.01 2.2E-07 46.6 6.4 62 23-90 10-73 (85)
236 TIGR02402 trehalose_TreZ malto 96.2 0.008 1.7E-07 64.2 6.5 72 23-102 1-75 (542)
237 cd05806 CBM20_laforin Laforin 96.0 0.091 2E-06 43.5 10.3 51 26-76 10-74 (112)
238 PF03423 CBM_25: Carbohydrate 95.9 0.018 4E-07 45.5 5.3 61 22-82 3-76 (87)
239 PRK05402 glycogen branching en 95.8 0.015 3.3E-07 64.4 6.1 60 22-84 29-93 (726)
240 TIGR01515 branching_enzym alph 95.4 0.06 1.3E-06 58.5 8.9 65 23-89 30-102 (613)
241 cd05815 CBM20_DPE2_repeat1 Dis 95.0 0.083 1.8E-06 43.0 6.7 46 31-76 13-65 (101)
242 COG1125 OpuBA ABC-type proline 94.1 0.39 8.4E-06 45.5 9.5 113 349-479 187-308 (309)
243 PLN02316 synthase/transferase 94.1 0.23 5E-06 56.4 9.4 61 19-79 327-399 (1036)
244 PLN02950 4-alpha-glucanotransf 93.7 0.45 9.7E-06 53.8 10.9 74 16-91 148-237 (909)
245 TIGR02104 pulA_typeI pullulana 93.7 0.16 3.5E-06 55.2 7.2 65 23-90 21-95 (605)
246 PF11806 DUF3327: Domain of un 93.4 0.69 1.5E-05 39.0 9.0 81 21-102 2-112 (122)
247 PLN02950 4-alpha-glucanotransf 93.1 0.64 1.4E-05 52.6 10.7 68 17-84 5-88 (909)
248 COG4175 ProV ABC-type proline/ 92.8 0.24 5.3E-06 48.2 6.0 91 268-398 293-383 (386)
249 PLN02316 synthase/transferase 92.7 0.34 7.3E-06 55.2 7.9 59 21-79 154-222 (1036)
250 PLN02960 alpha-amylase 89.9 0.38 8.2E-06 53.4 4.6 52 24-77 132-198 (897)
251 TIGR03415 ABC_choXWV_ATP choli 89.3 0.8 1.7E-05 46.7 6.2 48 349-398 333-380 (382)
252 TIGR02100 glgX_debranch glycog 89.0 0.9 1.9E-05 50.1 6.7 54 23-80 16-75 (688)
253 PRK03705 glycogen debranching 87.6 0.92 2E-05 49.6 5.7 54 23-80 21-78 (658)
254 PRK10439 enterobactin/ferric e 87.0 4.6 0.0001 41.7 10.2 87 17-105 35-163 (411)
255 TIGR02102 pullulan_Gpos pullul 87.0 1.4 3E-05 50.8 6.8 65 23-89 329-408 (1111)
256 COG1125 OpuBA ABC-type proline 86.3 2.2 4.7E-05 40.6 6.5 39 357-395 269-307 (309)
257 TIGR02103 pullul_strch alpha-1 82.7 4.9 0.00011 45.5 8.5 66 23-90 137-216 (898)
258 cd02857 CD_pullulan_degrading_ 82.4 4.9 0.00011 33.0 6.6 58 19-76 16-79 (116)
259 PF01357 Pollen_allerg_1: Poll 80.0 6.4 0.00014 30.6 6.0 62 17-83 10-77 (82)
260 KOG0470 1,4-alpha-glucan branc 79.0 1.5 3.2E-05 47.3 2.8 46 16-64 109-157 (757)
261 PRK14510 putative bifunctional 72.8 10 0.00022 44.8 7.6 54 23-80 25-84 (1221)
262 COG3794 PetE Plastocyanin [Ene 72.7 13 0.00028 31.6 6.2 50 20-73 61-111 (128)
263 PLN03244 alpha-amylase; Provis 71.8 4.3 9.2E-05 44.8 4.0 65 11-77 121-201 (872)
264 KOG0476 Cl- channel CLC-2 and 66.3 7.9 0.00017 42.1 4.5 53 428-480 593-646 (931)
265 PF02903 Alpha-amylase_N: Alph 65.3 9 0.0002 32.0 3.9 68 17-84 19-98 (120)
266 KOG2118 Predicted membrane pro 64.5 8.9 0.00019 40.6 4.5 114 343-476 206-324 (498)
267 KOG1263 Multicopper oxidases [ 60.5 16 0.00036 39.1 5.7 63 43-110 85-152 (563)
268 PLN02877 alpha-amylase/limit d 57.8 38 0.00081 38.8 8.1 51 23-77 224-280 (970)
269 PRK11388 DNA-binding transcrip 52.9 43 0.00092 36.8 7.6 97 360-473 61-163 (638)
270 TIGR03503 conserved hypothetic 51.4 34 0.00073 34.6 5.8 42 35-79 152-195 (374)
271 PRK10785 maltodextrin glucosid 49.4 50 0.0011 36.0 7.3 63 17-79 17-87 (598)
272 TIGR02375 pseudoazurin pseudoa 49.2 68 0.0015 26.7 6.5 50 19-73 21-71 (116)
273 PF14347 DUF4399: Domain of un 48.9 36 0.00077 26.8 4.5 32 56-88 50-81 (87)
274 PF11896 DUF3416: Domain of un 48.2 38 0.00082 30.8 5.2 40 41-83 55-99 (187)
275 TIGR03009 plancto_dom_2 Planct 45.9 20 0.00043 33.3 3.0 16 75-90 67-85 (210)
276 TIGR03000 plancto_dom_1 Planct 40.1 1.1E+02 0.0023 23.3 5.6 48 22-81 4-57 (75)
277 TIGR03102 halo_cynanin halocya 38.1 1.1E+02 0.0025 25.3 6.1 49 20-73 49-99 (115)
278 PRK11388 DNA-binding transcrip 37.6 1.4E+02 0.0031 32.7 8.7 99 272-389 63-162 (638)
279 PF05198 IF3_N: Translation in 36.4 74 0.0016 24.3 4.4 29 372-400 12-40 (76)
280 PF13473 Cupredoxin_1: Cupredo 36.3 33 0.00072 27.6 2.7 17 56-72 73-90 (104)
281 PF05198 IF3_N: Translation in 35.5 73 0.0016 24.3 4.2 26 454-480 12-37 (76)
282 TIGR02657 amicyanin amicyanin. 35.4 1E+02 0.0022 23.7 5.2 48 22-73 20-69 (83)
283 PF03370 CBM_21: Putative phos 34.9 70 0.0015 26.3 4.4 65 20-84 20-106 (113)
284 COG1559 Aminodeoxychorismate l 32.4 5.3E+02 0.012 25.9 11.4 144 260-453 46-191 (342)
285 KOG2118 Predicted membrane pro 31.0 1.1E+02 0.0025 32.4 6.2 132 147-314 196-328 (498)
286 PF07495 Y_Y_Y: Y_Y_Y domain; 30.2 40 0.00088 24.3 2.1 22 63-84 34-58 (66)
287 PLN00115 pollen allergen group 29.8 2.1E+02 0.0045 24.0 6.3 50 28-81 44-96 (118)
288 KOG0045 Cytosolic Ca2+-depende 27.7 55 0.0012 35.7 3.3 26 67-92 116-144 (612)
289 COG2216 KdpB High-affinity K+ 25.2 98 0.0021 32.7 4.3 37 440-478 413-449 (681)
290 PF07483 W_rich_C: Tryptophan- 25.0 1.4E+02 0.003 24.6 4.4 44 33-79 30-73 (109)
291 PF08400 phage_tail_N: Prophag 24.0 65 0.0014 27.5 2.4 53 56-110 46-100 (134)
292 cd00503 Frataxin Frataxin is a 23.8 43 0.00094 27.3 1.3 18 66-84 65-82 (105)
293 PF00127 Copper-bind: Copper b 23.2 1.4E+02 0.003 23.7 4.2 18 21-38 25-43 (99)
294 PRK00446 cyaY frataxin-like pr 23.1 48 0.001 27.1 1.4 26 56-85 57-82 (105)
295 PF10648 Gmad2: Immunoglobulin 23.0 3.6E+02 0.0078 21.1 6.3 25 56-80 57-88 (88)
296 PF01491 Frataxin_Cyay: Fratax 22.3 92 0.002 25.6 3.0 22 63-85 64-86 (109)
297 cd02851 Galactose_oxidase_C_te 22.0 2.6E+02 0.0056 22.6 5.4 38 39-77 45-87 (101)
298 PF03422 CBM_6: Carbohydrate b 21.8 92 0.002 25.6 3.0 21 59-79 91-111 (125)
299 PF04985 Phage_tube: Phage tai 21.3 3.4E+02 0.0073 23.9 6.7 47 33-86 99-147 (167)
300 COG3397 Uncharacterized protei 21.2 6E+02 0.013 24.7 8.4 74 21-105 114-207 (308)
301 cd00916 Npc2_like Niemann-Pick 21.2 1.8E+02 0.0039 24.3 4.6 56 19-75 32-90 (123)
302 PLN02792 oxidoreductase 21.2 81 0.0018 33.8 3.0 57 43-102 73-134 (536)
303 TIGR03422 mito_frataxin fratax 20.9 61 0.0013 26.0 1.6 18 67-85 66-83 (97)
304 PRK10301 hypothetical protein; 20.7 5.1E+02 0.011 21.7 8.0 62 17-79 44-113 (124)
305 TIGR02589 cas_Csd2 CRISPR-asso 20.0 2.1E+02 0.0045 27.9 5.3 73 1-79 111-188 (284)
No 1
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=100.00 E-value=1.2e-35 Score=297.38 Aligned_cols=303 Identities=30% Similarity=0.543 Sum_probs=257.9
Q ss_pred HHHHHHHhhccccccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCCC
Q 011558 144 SRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 223 (483)
Q Consensus 144 ~~~~~~~fl~~~~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~~ 223 (483)
....+..|++.++||+.+|.+++++++|..+++++||++|..++.+++|+||....+|+|++++.||+.++...+.....
T Consensus 55 ~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~ 134 (381)
T KOG1764|consen 55 AVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSS 134 (381)
T ss_pred hhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999998887764211
Q ss_pred C-CHHHHhhccHHHHHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEE
Q 011558 224 L-TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY 302 (483)
Q Consensus 224 l-~~~~l~~~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~G 302 (483)
. ..+.++...+..|++...... ....++++.+.|..++.+++..+.+++++++||.| .+.+ ++.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d--~~~~---~v~~ 200 (381)
T KOG1764|consen 135 LDNIEVLEDSQLSKRREVECLLK---------ETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID--PETG---EVLY 200 (381)
T ss_pred HHHHhhhhhhhccccchhhhhhc---------cccCCCceeecCcHHHHHHHHHHHhCCccceeeec--cccc---ceee
Confidence 1 123344444555554422211 12345559999999999999999999999999995 4566 8999
Q ss_pred EechhhHHHHHHhhccCCCCCCcccccccccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCC
Q 011558 303 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND 382 (483)
Q Consensus 303 iit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g 382 (483)
++|++.|++++..+.+..+ +..++..++.++.+|+|. .+..+..++++.+|+++|..++++++||||++|
T Consensus 201 ilt~~rIl~~l~~~~~~~~-~~~~l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g 270 (381)
T KOG1764|consen 201 ILTQRRILKFLWLNGRLLP-LPSLLSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVDENG 270 (381)
T ss_pred ehhHHHHHHHHHHhhcccc-cHHHhhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEcCCC
Confidence 9999999999988776654 467789999999999996 688999999999999999999999999999999
Q ss_pred cEEEEEeHHHHHHHHhcccccccccCCcc-HHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEe
Q 011558 383 SLLDIYSRSDITALAKDKAYAQIHLDEMN-IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE 461 (483)
Q Consensus 383 ~lvGiit~~di~~l~~~~~~~~~~l~~~~-v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd 461 (483)
..+|+++..|+..+...+.|.... .+ +.+++.... .-..++++|.+++||.+++++|..+++||+||||
T Consensus 271 ~~v~~~s~~Dv~~l~~~~~~~~~~---~~~l~~~~~~~~-------~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd 340 (381)
T KOG1764|consen 271 KKVGNYSRFDVIHLAREGTYNNLD---LSCLSEALSHRP-------IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVD 340 (381)
T ss_pred ceecceehhhhhhhhhcCccCccc---hhHHHHHhhhcc-------cccCccEEEeecchHHHHHHHHHhcCceEEEEEc
Confidence 999999999999999888877653 45 777765533 2234689999999999999999999999999999
Q ss_pred CCCCeEEEEEehHHHHHHHh
Q 011558 462 AGSKRVEGIISLSDVFRFLL 481 (483)
Q Consensus 462 ~~~~~l~GiIs~~DIl~~l~ 481 (483)
++|+++|+||++||+.++.
T Consensus 341 -~~~~l~GvvSLsDil~~l~ 359 (381)
T KOG1764|consen 341 -EDGVLVGVISLSDILSYLV 359 (381)
T ss_pred -CCCcEEEEeeHHHHHHHHH
Confidence 5899999999999999985
No 2
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.92 E-value=3.1e-25 Score=172.86 Aligned_cols=79 Identities=46% Similarity=0.944 Sum_probs=74.2
Q ss_pred ceEEEEEecCCCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEEEEEcCeeeeCCCCCeeeCCCCCeeeE
Q 011558 20 LVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV 99 (483)
Q Consensus 20 ~~~~~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~~~~~g~~nn~ 99 (483)
++||+|+|+++|++|+|+|+|+||++..||.+.. ++ |+++++||||.|+|||+|||+|.+||++|++.|++|+.||+
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~--~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~ 77 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSG--KG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNV 77 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceECC--CC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeee
Confidence 4799999999999999999999999878999975 44 99999999999999999999999999999999999999999
Q ss_pred EE
Q 011558 100 YI 101 (483)
Q Consensus 100 ~~ 101 (483)
|.
T Consensus 78 i~ 79 (79)
T cd02859 78 ID 79 (79)
T ss_pred EC
Confidence 83
No 3
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.78 E-value=6.6e-19 Score=138.73 Aligned_cols=77 Identities=38% Similarity=0.748 Sum_probs=69.5
Q ss_pred eEEEEEecCC-CceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEEEEEcCeee-eCCCCCe-eeCCCCCee
Q 011558 21 VPVRFIWPNG-GRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR-HDENQPH-VSGNYGVVN 97 (483)
Q Consensus 21 ~~~~f~~~~~-~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~-~d~~~~~-~~~~~g~~n 97 (483)
+|++|+|.++ +++|+|+|+||+|+ ..+|.+.+ +|.|+++++|++|.|+|||+|||.|. +||.++. ..|++|+.|
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~~--~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n 78 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMEREG--DGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKN 78 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEECC--CCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccc
Confidence 5899999887 59999999999998 47998865 79999999999999999999999998 9998885 778899999
Q ss_pred eEE
Q 011558 98 CVY 100 (483)
Q Consensus 98 n~~ 100 (483)
|+|
T Consensus 79 ~v~ 81 (82)
T cd02861 79 AVF 81 (82)
T ss_pred eEc
Confidence 987
No 4
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.74 E-value=2e-17 Score=150.80 Aligned_cols=123 Identities=18% Similarity=0.373 Sum_probs=111.8
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcC
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 419 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~ 419 (483)
..+++++|++++.++.+++++.+|.++|.++++++.||+|+ ++++|++|.+|+..+++++.+ +..|++
T Consensus 171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~------~~kV~~----- 238 (294)
T COG2524 171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNL------DAKVSD----- 238 (294)
T ss_pred cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCc------cccHHH-----
Confidence 34678899999999999999999999999999999999995 599999999999998887643 356777
Q ss_pred CCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhcC
Q 011558 420 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV 483 (483)
Q Consensus 420 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~~ 483 (483)
+|.+.++++..++.+.||+++|..+++.||.|+| .+|+++|+||++|||+.+.+.
T Consensus 239 --------~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~d-s~gkpvGiITrTDIL~~ia~~ 293 (294)
T COG2524 239 --------YMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTD-SNGKPVGIITRTDILTRIAGL 293 (294)
T ss_pred --------HhccCCceEcCchhHHHHHHHHHhcCcceEEEEc-cCCcEEEEEehHHHHHHhhcc
Confidence 7888999999999999999999999999999999 589999999999999998763
No 5
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.68 E-value=7.9e-17 Score=155.61 Aligned_cols=90 Identities=37% Similarity=0.721 Sum_probs=83.2
Q ss_pred cCCcceEEEEEecCCCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEEEEEcCeeeeCCCCCeeeCCCCC
Q 011558 16 VGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGV 95 (483)
Q Consensus 16 ~~~~~~~~~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~~~~~g~ 95 (483)
......|++|+|..+++.|+|+|||.||...+++.+.....|.|..++.|++|.|+|||+|||+|++|++.|+++|..|+
T Consensus 75 ~~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn 154 (289)
T KOG1616|consen 75 DREQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGN 154 (289)
T ss_pred ccccCCceEEEecCCCceEEEecccccccccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCC
Confidence 34568999999999999999999999999989998877556669999999999999999999999999999999999999
Q ss_pred eeeEEEeccCC
Q 011558 96 VNCVYIAVPQP 106 (483)
Q Consensus 96 ~nn~~~v~~~~ 106 (483)
.||++.| .+.
T Consensus 155 ~~N~i~v-~~~ 164 (289)
T KOG1616|consen 155 LNNILEV-QDP 164 (289)
T ss_pred cccceEe-cCc
Confidence 9999999 654
No 6
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.63 E-value=1.1e-14 Score=123.39 Aligned_cols=119 Identities=39% Similarity=0.659 Sum_probs=95.8
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++.+|++.+...+..... ..++.+.+.... .|
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~---~~~~~~~~~~~~-------~~ 71 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNL---DLTVGEALERRS-------QD 71 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccc---cCCHHHHHhhcc-------cC
Confidence 56789999999999999999999999999989999999999999986543322111 123443221111 34
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
..++.++.+++++.+++++|.+++.+++||+| ++|+++|+||++|++++
T Consensus 72 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~~~Givt~~di~~~ 120 (120)
T cd04641 72 FEGVRTCSPDDCLRTIFDLIVKARVHRLVVVD-ENKRVEGIISLSDILQF 120 (120)
T ss_pred CCCCeEEcCCCcHHHHHHHHHhcCccEEEEEC-CCCCEEEEEEHHHhhcC
Confidence 45678999999999999999999999999999 46899999999999864
No 7
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.62 E-value=2.7e-15 Score=136.97 Aligned_cols=116 Identities=20% Similarity=0.344 Sum_probs=104.0
Q ss_pred CCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccc
Q 011558 255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI 334 (483)
Q Consensus 255 ~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l 334 (483)
..++++++++.+++|+.+|.+++.+++++..||+|+ + +++|++|..||.+.+...
T Consensus 176 ~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~----d---k~vGiit~~dI~~aia~g------------------ 230 (294)
T COG2524 176 NLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD----D---KIVGIITLSDIAKAIANG------------------ 230 (294)
T ss_pred hhccCCceEecCCccHHHHHHHHHHcCccCCceecC----C---ceEEEEEHHHHHHHHHcC------------------
Confidence 467899999999999999999999999999999964 3 799999999999988532
Q ss_pred cccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558 335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 398 (483)
Q Consensus 335 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~ 398 (483)
....+|.++|+++++++..++.+.||+++|..+++.++.|+|.+|+++|++|+.|++..++
T Consensus 231 ---~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 231 ---NLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred ---CccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 2334667779999999999999999999999999999999999999999999999998554
No 8
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.62 E-value=7.9e-15 Score=136.15 Aligned_cols=173 Identities=17% Similarity=0.269 Sum_probs=130.2
Q ss_pred ceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhccHHH-HHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHH
Q 011558 200 RFVGVLSALDFILILRELGTNGSNLTEEELETHTISA-WKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKIL 278 (483)
Q Consensus 200 ~~vGilt~~D~i~il~~~~~~~~~l~~~~l~~~~i~~-~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~ 278 (483)
+-+| ++..|+-..|+.+.+.. .++.++++.+.-+. ++...+..+.-.|.| +|+++++++.+++++.+|.++|.
T Consensus 199 ~rvg-fs~~Dld~aL~~~~E~l-DIdrddLe~llr~~elqa~~R~~~~Ltcad----IMSrdVvtv~~~ts~dhA~~ll~ 272 (382)
T COG3448 199 QRVG-FSSEDLDAALQRLGETL-DIDRDDLERLLRETELQALRRRMGELTCAD----IMSRDVVTVSTDTSIDHARKLLQ 272 (382)
T ss_pred hccC-CCHHHHHHHHHhcCcee-cCCHHHHHHHHHHHHHHHHHHHhccccHHH----hcCccceecCCcCChHHHHHHHH
Confidence 4456 68899998888775432 34567776654332 222222222223333 69999999999999999999999
Q ss_pred hCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccccccccccccCCCeeEecCCC
Q 011558 279 QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTA 358 (483)
Q Consensus 279 ~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~ 358 (483)
+++++.+||+|+ +. +++|++|++|+++.... ..-+.++.+ ..++++.+|+.++.++.+++
T Consensus 273 ~H~ikaLPV~d~---~~---rl~GiVt~~dl~~~a~~----------~p~qrlr~~----~~~~vk~imt~~v~tv~pdt 332 (382)
T COG3448 273 EHRIKALPVLDE---HR---RLVGIVTQRDLLKHARP----------SPFQRLRFL----RPPTVKGIMTTPVVTVRPDT 332 (382)
T ss_pred HcCccccccccc---cc---ceeeeeeHHHHhhccCc----------chHHHhhcc----CCCcccccccCcceeecCCC
Confidence 999999999964 33 89999999998873311 011222211 23477888999999999999
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558 359 SLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 398 (483)
Q Consensus 359 ~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~ 398 (483)
+..+.+-++.+.+.+++||+|++|+++||+|..|++..+.
T Consensus 333 pa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~ 372 (382)
T COG3448 333 PAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALY 372 (382)
T ss_pred cHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHH
Confidence 9999999999999999999999999999999999988543
No 9
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.61 E-value=2.8e-15 Score=139.08 Aligned_cols=128 Identities=18% Similarity=0.355 Sum_probs=108.2
Q ss_pred ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558 342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 421 (483)
Q Consensus 342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~ 421 (483)
...++|+++++++..++++.+|.++|.++++.++||+|++.+++|+++++|+.+-.....+.++ +..+
T Consensus 246 tcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrl-----------r~~~- 313 (382)
T COG3448 246 TCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRL-----------RFLR- 313 (382)
T ss_pred cHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHh-----------hccC-
Confidence 4567899999999999999999999999999999999999999999999999885443332222 1111
Q ss_pred CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558 422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 482 (483)
Q Consensus 422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~ 482 (483)
++...++|+.++.++.++++..+.+-+|.+.+.|.+||+| +.|+++||||.+|++.++..
T Consensus 314 ~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld-~~g~lvGIvsQtDliaal~r 373 (382)
T COG3448 314 PPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD-AAGKLVGIVSQTDLIAALYR 373 (382)
T ss_pred CCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc-CCCcEEEEeeHHHHHHHHHH
Confidence 1112238999999999999999999999999999999999 58999999999999998753
No 10
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.59 E-value=1.1e-14 Score=123.34 Aligned_cols=119 Identities=18% Similarity=0.389 Sum_probs=101.1
Q ss_pred cccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCC
Q 011558 343 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 422 (483)
Q Consensus 343 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~ 422 (483)
...+|..+++.+.+++++.+|+++|..++++.+||+++ ++++|-||..+|.++..++. ..+....+.+
T Consensus 67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~---e~i~~~~vr~-------- 134 (187)
T COG3620 67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM---ESIRSLRVRE-------- 134 (187)
T ss_pred HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc---cchhhhhHHH--------
Confidence 45569999999999999999999999999999999985 99999999999999765442 1222456666
Q ss_pred CCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558 423 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 482 (483)
Q Consensus 423 ~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~ 482 (483)
+|..++++++++.++..+-.++..++. +.|++ +|+++||||..||++++.+
T Consensus 135 -----vM~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e--~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 135 -----VMGEPFPTVSPDESLNVISQLLEEHPA--VLVVE--NGKVVGIITKADIMKLLAG 185 (187)
T ss_pred -----HhcCCCCcCCCCCCHHHHHHHHhhCCe--EEEEe--CCceEEEEeHHHHHHHHhc
Confidence 788899999999999988888877764 77886 6999999999999999865
No 11
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.55 E-value=5.1e-14 Score=115.02 Aligned_cols=95 Identities=15% Similarity=0.255 Sum_probs=84.8
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 428 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 428 (483)
.+.++.+++++.+|.++|.+++++++||+|++ |+++|++|..|+.+...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------ 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------ 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence 46789999999999999999999999999974 89999999999876211
Q ss_pred CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCC-CeEEEEEehHHHHHH
Q 011558 429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFRF 479 (483)
Q Consensus 429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~-~~l~GiIs~~DIl~~ 479 (483)
+.++.+++++.+|+++|.+++++++||+| ++ |+++|+||.+||+++
T Consensus 52 ----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~~~giit~~d~~~~ 98 (98)
T cd04618 52 ----LVSIHPERSLFDAALLLLKNKIHRLPVID-PSTGTGLYILTSRRILKF 98 (98)
T ss_pred ----eEEeCCCCcHHHHHHHHHHCCCCEeeEEE-CCCCCceEEeehhhhhcC
Confidence 45799999999999999999999999999 45 899999999999863
No 12
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.55 E-value=8.4e-14 Score=116.28 Aligned_cols=110 Identities=12% Similarity=0.269 Sum_probs=92.0
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+++...+ .. .+.++.+ +|
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~-~~-----~~~~v~~-------------~~ 62 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPN-DY-----ETLKVCE-------------VY 62 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccc-cc-----cccChhh-------------ee
Confidence 35678999999999999998999999999988999999999999874221 11 1133444 45
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
..++.++.+++++.+|+++|.+++.+++||+| ++|+++|+||.+|++++
T Consensus 63 ~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd-~~~~~~Giit~~di~~~ 111 (111)
T cd04603 63 IVPVPIVYCDSKVTDLLRIFRETEPPVVAVVD-KEGKLVGTIYERELLRF 111 (111)
T ss_pred ecCCcEECCCCcHHHHHHHHHHcCCCeEEEEc-CCCeEEEEEEhHHhhcC
Confidence 55678999999999999999999999999999 46999999999999863
No 13
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.55 E-value=1.4e-13 Score=115.52 Aligned_cols=111 Identities=16% Similarity=0.301 Sum_probs=93.4
Q ss_pred eeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccCC
Q 011558 351 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG 430 (483)
Q Consensus 351 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~ 430 (483)
+.++.+++++.+|++.|.+.+...+||+|++|+++|+++.+|+.+......... .+.++.+ +|.
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~---~~~~v~~-------------~~~ 66 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPG---CTAPVEN-------------VMT 66 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCc---ccCCHHH-------------Hhc
Confidence 567899999999999999999999999999999999999999987554211111 1245665 455
Q ss_pred CcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 431 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 431 ~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
.++.++.+++++.++++.|.+++.+++||+| ++|+++|+||++|+++
T Consensus 67 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 67 RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVD-ENARPLGVLNARDALK 113 (114)
T ss_pred CCCeeECCCCCHHHHHHHHHHcCCCeEEEEC-CCCcEEEEEEhHhhcc
Confidence 5788999999999999999999999999999 4689999999999975
No 14
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.51 E-value=1.7e-13 Score=136.99 Aligned_cols=120 Identities=15% Similarity=0.221 Sum_probs=103.3
Q ss_pred cccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558 341 PRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 418 (483)
Q Consensus 341 ~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~ 418 (483)
.+++++|.+ ++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+++....+. .+.+.++.+
T Consensus 202 ~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~----~~~~~~v~~---- 273 (326)
T PRK10892 202 LRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGI----DLRQASIAD---- 273 (326)
T ss_pred CcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCC----CcccCCHHH----
Confidence 367888987 8999999999999999999988888888998999999999999987554321 112345666
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
+|..++.++.+++++.+|+++|.+++++++||+| +++++|+||++||+++
T Consensus 274 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~~ 323 (326)
T PRK10892 274 ---------VMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLRA 323 (326)
T ss_pred ---------hcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence 6777889999999999999999999999999998 4899999999999975
No 15
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.51 E-value=3.5e-13 Score=113.75 Aligned_cols=112 Identities=21% Similarity=0.311 Sum_probs=92.4
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++.+++++.+|++.|..++.+++||+|++|+++|+++..|+++...... .....++.+ +|
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~----~~~~~~~~~-------------~~ 64 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA----DLQKVPVGV-------------IM 64 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC----CccCCCHHH-------------Hh
Confidence 5678999999999999999899999999998899999999999988554221 111244555 33
Q ss_pred CC--cceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCC--CeEEEEEehHHHHH
Q 011558 430 GQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS--KRVEGIISLSDVFR 478 (483)
Q Consensus 430 ~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~--~~l~GiIs~~DIl~ 478 (483)
.. .+.++.+++++.+++++|.+++++++||||+++ |+++|+||++||++
T Consensus 65 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 65 TRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 32 578999999999999999999999999999422 69999999999975
No 16
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.51 E-value=4.2e-13 Score=112.53 Aligned_cols=112 Identities=20% Similarity=0.343 Sum_probs=93.4
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++...+..... ..++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~----~~~~~~-------------~~ 64 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGE----PSAVDE-------------VA 64 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccccc----cccHHH-------------hc
Confidence 4567899999999999999999999999999999999999999998654321110 123444 45
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCC--CeEEEEEehHHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS--KRVEGIISLSDVFRF 479 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~--~~l~GiIs~~DIl~~ 479 (483)
..++.+|.+++++.+++++|.+++.+++||+|+ + |+++|+||.+||+++
T Consensus 65 ~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 65 TPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR-GNPGQVLGLLTRENVLLA 115 (115)
T ss_pred cCCceEECCCCCHHHHHHHHHHcCCceeeEEeC-CCCCeEEEEEEhHHhhcC
Confidence 557889999999999999999999999999994 5 799999999999863
No 17
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51 E-value=4.3e-13 Score=112.38 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=93.3
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 428 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 428 (483)
++.++.+++++.++++.|.+++.+.+||+|++ |+++|+++.+|+++.+...... ..+.++.+ +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~---~~~~~v~~-------------~ 65 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRD---PDRVNVYE-------------I 65 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCC---CCccCHHH-------------H
Confidence 46789999999999999999999999999987 8999999999998844322111 11245555 4
Q ss_pred CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
|..++.++.+++++.++++.|.+++.+.+||+| + |+++|+||+.||+++
T Consensus 66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 66 MTKPLISVSPDMDIKYCARLMERTNIRRAPVVE-N-NELIGIISLTDIFLA 114 (114)
T ss_pred hcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee-C-CEEEEEEEHHHhhcC
Confidence 555788999999999999999999999999999 4 999999999999863
No 18
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.50 E-value=1.9e-13 Score=111.64 Aligned_cols=97 Identities=45% Similarity=0.748 Sum_probs=85.3
Q ss_pred ccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhccHHHHHHHHhhh
Q 011558 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 244 (483)
Q Consensus 165 ~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~ 244 (483)
+++++++.+.|+.+|++.|.++++.++||+|+++++++|++|..|+...+.
T Consensus 1 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~----------------------------- 51 (98)
T cd04618 1 SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR----------------------------- 51 (98)
T ss_pred CeEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-----------------------------
Confidence 378999999999999999999999999999976678999999999864221
Q ss_pred hccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHH
Q 011558 245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (483)
Q Consensus 245 ~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~ 311 (483)
++++.+++++.+|+++|.+++++++||+++ .+| +++|++|.+||++
T Consensus 52 ----------------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~---~~~giit~~d~~~ 97 (98)
T cd04618 52 ----------------LVSIHPERSLFDAALLLLKNKIHRLPVIDP--STG---TGLYILTSRRILK 97 (98)
T ss_pred ----------------eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC--CCC---CceEEeehhhhhc
Confidence 567899999999999999999999999964 235 8999999999875
No 19
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.49 E-value=1.6e-13 Score=117.13 Aligned_cols=113 Identities=14% Similarity=0.225 Sum_probs=93.6
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++.+++++.++++.|.+++++.+||+|++|+++|+++..|+++....+... . +.++.+ +|
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~-~---~~~v~~-------------im 65 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQ-P---SDPVSK-------------AL 65 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccC-C---CCcHHH-------------Hh
Confidence 577899999999999999999999999999889999999999998754432211 1 356666 66
Q ss_pred CCcceEEeCCCCHHHHHHHHH---------cCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLA---------NPGVRRLVIVEAGSKRVEGIISLSDVFRFL 480 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~---------~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l 480 (483)
.+++.++.+++++.++.++|. +.+.+++||+| ++|+++|+||.+||++++
T Consensus 66 ~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 66 YKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE-KQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred hccceecCCCCCHHHHHhhcccCCceEEEeccccccccccc-cccceEEEEehhHhhhhC
Confidence 678899999999999999653 34678888998 579999999999999875
No 20
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.49 E-value=6e-13 Score=113.05 Aligned_cols=117 Identities=21% Similarity=0.370 Sum_probs=94.9
Q ss_pred CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccc------ccCCccHHHHHhcCCCC
Q 011558 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI------HLDEMNIHQALQLGQDA 422 (483)
Q Consensus 349 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~------~l~~~~v~~~l~~~~~~ 422 (483)
+++.++.+++++.++.+.|.+.+++++||++++|+++|+++..|++........... .....++.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~-------- 73 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGD-------- 73 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHH--------
Confidence 467889999999999999999999999999988999999999999875542221000 001123333
Q ss_pred CCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 423 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 423 ~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
+|..++.++.+++++.+++++|.+.+.+++||+| ++|+++|+||.+|++++
T Consensus 74 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 74 -----IMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVD-EDRRLVGIVTQTDLIAA 124 (124)
T ss_pred -----hccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEc-CCCCEEEEEEhHHhhcC
Confidence 5666788999999999999999999999999999 47999999999999863
No 21
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.48 E-value=4.1e-13 Score=133.97 Aligned_cols=120 Identities=13% Similarity=0.182 Sum_probs=103.6
Q ss_pred cccccccCCC--eeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558 341 PRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 418 (483)
Q Consensus 341 ~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~ 418 (483)
.+|+++|.++ +.++++++++.+|.+.|.+.+...+||+|++|+++|+++..|+.+....+... +.++.+
T Consensus 197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~-----~~~v~~---- 267 (321)
T PRK11543 197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGAL-----TTPVNE---- 267 (321)
T ss_pred hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCCc-----CCcHHH----
Confidence 3678889998 99999999999999999988889999999999999999999998855432111 234555
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
+|.+++.++.+++++.+|++.|.++++.++|||| ++|+++|+||+.||+++
T Consensus 268 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 268 ---------AMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVD-ENGKLTGAINLQDFYQA 318 (321)
T ss_pred ---------hcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHhc
Confidence 6666788999999999999999999999999999 47899999999999975
No 22
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=1.2e-12 Score=108.93 Aligned_cols=112 Identities=21% Similarity=0.404 Sum_probs=93.5
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++.++.++.++++.|.+.+++.+||+|++++++|+++..|+++.+....... ...++.+ +|
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~---~~~~~~~-------------~~ 65 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASA---LDTPVSE-------------IM 65 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCc---cccCHHH-------------hc
Confidence 4667899999999999999999999999998899999999999988554321110 1235555 45
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
..++.++.+++++.++++.|.+.+.+++||++ + |+++|+||.+||+++
T Consensus 66 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~ 113 (113)
T cd04623 66 TRNVITVTPDDTVDEAMALMTERRFRHLPVVD-G-GKLVGIVSIGDVVKA 113 (113)
T ss_pred CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe-C-CEEEEEEEHHHhhcC
Confidence 55788999999999999999999999999999 4 899999999999864
No 23
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.47 E-value=5.3e-13 Score=108.53 Aligned_cols=95 Identities=16% Similarity=0.368 Sum_probs=85.3
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++.+++++.+|++.|.+++++.+||+|++|+++|+++.+|+....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~-------------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS-------------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC--------------------------------
Confidence 567899999999999999999999999999899999999999987621
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
.+.++.+++++.+++++|.+++.+++||+| ++|+++|+||.+||+++
T Consensus 50 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~~~~Giit~~di~~~ 96 (96)
T cd04614 50 --EVVTATKRTTVSECAQKMKRNRIEQIPIIN-GNDKLIGLLRDHDLLKP 96 (96)
T ss_pred --CcEEecCCCCHHHHHHHHHHhCCCeeeEEC-CCCcEEEEEEHHHhhcC
Confidence 145789999999999999999999999999 46899999999999863
No 24
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1.4e-12 Score=110.46 Aligned_cols=116 Identities=19% Similarity=0.323 Sum_probs=94.2
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccc-----ccCCccHHHHHhcCCCCCC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-----HLDEMNIHQALQLGQDANP 424 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~-----~l~~~~v~~~l~~~~~~~~ 424 (483)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..++++.......... .....++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~---------- 71 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAE---------- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHH----------
Confidence 46788999999999999999999999999988999999999999885542211100 001234444
Q ss_pred CcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 425 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 425 ~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
+|..++.++.+++++.+++++|.+.+.+.+||+| ++|+++|+||..|++++
T Consensus 72 ---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~dl~~~ 122 (122)
T cd04803 72 ---VMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVD-DKGTLVGIITRSDFLRL 122 (122)
T ss_pred ---hhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEc-CCCCEEEEEEHHHhhcC
Confidence 4555788999999999999999999999999999 46899999999999863
No 25
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=8.7e-13 Score=112.69 Aligned_cols=121 Identities=21% Similarity=0.327 Sum_probs=92.7
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHH---HHHhcCCCCCCCc
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH---QALQLGQDANPSL 426 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~---~~l~~~~~~~~~~ 426 (483)
.+.++.+++++.+|++.|.+++++++||+|++|+++|+++..|+++....+..... .+.. ....... ...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~ 74 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLL----YRTITFKELSEKFT---DSD 74 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhc----ccchhhhhhhhhcc---ccc
Confidence 46789999999999999999999999999989999999999999886542211100 0000 0000000 001
Q ss_pred ccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 427 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 427 ~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
..|..++.++.+++++.+|+++|.+++.+++||+| ++++++|+||.+||++
T Consensus 75 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVD-EEGKPIGVITLTDIIS 125 (126)
T ss_pred ccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEEC-CCCCEEEEEEHHHHhc
Confidence 14556788999999999999999999999999999 4699999999999986
No 26
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=2.5e-12 Score=106.74 Aligned_cols=108 Identities=20% Similarity=0.430 Sum_probs=92.5
Q ss_pred CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 428 (483)
Q Consensus 349 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 428 (483)
+++.++.++.++.++++.|.+++.+.+||+|++|+++|+++..++++...... .++.+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~--------~~~~~-------------~ 60 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDK--------KSVED-------------I 60 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCc--------cCHHH-------------h
Confidence 35778999999999999999999999999998899999999999987554221 12444 4
Q ss_pred CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
|..++.++.+++++.++++.|.+++.+.+||++ ++|+++|+||+.||++
T Consensus 61 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~v~~~di~~ 109 (110)
T cd04605 61 MTRNVITATPDEPIDVAARKMERHNISALPVVD-AENRVIGIITSEDISK 109 (110)
T ss_pred cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEEC-CCCcEEEEEEHHHhhh
Confidence 445788999999999999999999999999999 4799999999999975
No 27
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.46 E-value=4.1e-13 Score=135.50 Aligned_cols=121 Identities=25% Similarity=0.382 Sum_probs=107.0
Q ss_pred cccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH-hcccccccccCCccHHHHHhcC
Q 011558 341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA-KDKAYAQIHLDEMNIHQALQLG 419 (483)
Q Consensus 341 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~-~~~~~~~~~l~~~~v~~~l~~~ 419 (483)
.++++++..+++++++.+++.+|...|.+.+++++.++++++..+||+|++|++... .++... +.+|++
T Consensus 149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-----~~~V~e----- 218 (610)
T COG2905 149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-----TQKVSE----- 218 (610)
T ss_pred HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-----ccchhh-----
Confidence 467788999999999999999999999999999999999999999999999999844 333221 245555
Q ss_pred CCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558 420 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481 (483)
Q Consensus 420 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~ 481 (483)
+|+.++++++.++.+.+|+-+|.+++++||||++ +|+++|+||.+||++.+.
T Consensus 219 --------vmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e--~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 219 --------VMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE--DGQPLGILTLTDILRLFS 270 (610)
T ss_pred --------hhccCceeecCcchHHHHHHHHHHhCCceeeeec--CCeeeEEeeHHHHHHhhC
Confidence 8889999999999999999999999999999998 599999999999999875
No 28
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=2.3e-12 Score=107.66 Aligned_cols=109 Identities=18% Similarity=0.273 Sum_probs=91.8
Q ss_pred eeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccCC
Q 011558 351 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG 430 (483)
Q Consensus 351 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~ 430 (483)
+.++.+++++.++++.|.+.+.+.++|+|++|+++|+++.+|+++....+... +.++.+ +|.
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~-----~~~v~~-------------~~~ 65 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSL-----DDPVSE-------------VMN 65 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCCc-----CCCHHH-------------hhc
Confidence 56789999999999999988999999999899999999999998755432111 234555 444
Q ss_pred CcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 431 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 431 ~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
..+.++.+++++.+++++|.+++.+++||+| ++|+++|+||.+||+.
T Consensus 66 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~di~~ 112 (113)
T cd04607 66 RNPITAKVGSSREEILALMRERSIRHLPILD-EEGRVVGLATLDDLLS 112 (113)
T ss_pred CCCEEEcCCCCHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEEhHHhcc
Confidence 5678999999999999999999999999999 4799999999999974
No 29
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.45 E-value=1.9e-12 Score=106.70 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=89.1
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++.++.++.+|++.|.+.+.+.+||+|++|+++|+++..|+++... .++.+ +|
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~-----------~~~~~-------------~~ 57 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG-----------GCCGD-------------HA 57 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc-----------cchhh-------------hc
Confidence 4668899999999999999889999999998899999999999986421 12333 44
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
...+.++.+++++.++++.|.+++...+||+| ++++++|+||.+|+++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 58 EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVD-EDGRYVGEVTQRSIAD 105 (106)
T ss_pred ccCCEEECCCCCHHHHHHHHHHCCCCeeeEEC-CCCcEEEEEEHHHhhc
Confidence 44567899999999999999999999999999 5789999999999986
No 30
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=3.1e-12 Score=106.52 Aligned_cols=110 Identities=18% Similarity=0.355 Sum_probs=93.3
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++..+.++.++++.|.+.+.+.+||+|++|+++|+++..|+++.+..+... +.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~~-----~~~v~~-------------~~ 63 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGIDL-----DTPVSE-------------IM 63 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCCC-----ccCHHH-------------hc
Confidence 466789999999999999999999999999889999999999998865533211 234554 45
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
..++.++.+++++.+++++|.+++...+||+| ++|+++|++|.+|+++
T Consensus 64 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 64 TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVD-KGGELVGVISIRDLVR 111 (112)
T ss_pred cCCCEEECCCCcHHHHHHHHHHcCccEEEEEc-CCCcEEEEEEHHHhcc
Confidence 55788999999999999999999999999999 4799999999999975
No 31
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.8e-12 Score=107.85 Aligned_cols=109 Identities=21% Similarity=0.376 Sum_probs=92.3
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++.+....... +.++.+ +|
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~------~~~v~~-------------~~ 62 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGP------DAPVRG-------------VM 62 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCC------CCcHHH-------------Hh
Confidence 45678999999999999988889999999988999999999999886543211 234555 44
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
..++.++.+++++.++++.|.+++.+++||+| ++|+++|+||.+|+.+
T Consensus 63 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~dl~~ 110 (111)
T cd04639 63 RRDFPTVSPSATLDAVLRLMQQGGAPAVPVVD-GSGRLVGLVTLENVGE 110 (111)
T ss_pred cCCCcEECCCCcHHHHHHHHHhcCCceeeEEc-CCCCEEEEEEHHHhhc
Confidence 45688999999999999999999999999999 4689999999999975
No 32
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.7e-12 Score=110.37 Aligned_cols=119 Identities=20% Similarity=0.293 Sum_probs=90.6
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 428 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 428 (483)
++.++.+++++.+|++.|.+++++++||+|++ |+++|+++..|+++....+....... +......+.. ..+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~ 73 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGL-DPLYPIPLRD-------LTI 73 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccch-hhhhhhhhhh-------ccc
Confidence 56788999999999999998899999999987 99999999999988553221100000 0000000000 014
Q ss_pred CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHH
Q 011558 429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF 477 (483)
Q Consensus 429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl 477 (483)
|..++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||++||-
T Consensus 74 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~vGiit~~di~ 121 (123)
T cd04627 74 GTSDVISINGDQPLIDALHLMHNEGISSVAVVD-NQGNLIGNISVTDVR 121 (123)
T ss_pred CcCCceEeCCCCCHHHHHHHHHHcCCceEEEEC-CCCcEEEEEeHHHhh
Confidence 566788999999999999999999999999999 468999999999984
No 33
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.6e-12 Score=110.50 Aligned_cols=116 Identities=17% Similarity=0.289 Sum_probs=93.5
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccc-c------ccCCccHHHHHhcCCC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQ-I------HLDEMNIHQALQLGQD 421 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~l~~~~~~~~-~------~l~~~~v~~~l~~~~~ 421 (483)
++.++.++.++.+++++|.+.+.+.+||+|++ |+++|+++..|++....+..... . .....++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 74 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRS------- 74 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHH-------
Confidence 46788999999999999999999999999987 99999999999998654322110 0 000123333
Q ss_pred CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
+|..++++|.+++++.++++.|.+.+.+.++|+| ++|+++|+||..||+++
T Consensus 75 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 75 ------IMTRNVITITPDDSIKDAAELMLEKRVGGLPVVD-DDGKLVGIVTERDLLKA 125 (125)
T ss_pred ------HhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEc-CCCcEEEEEEHHHhhcC
Confidence 4555788999999999999999999999999999 46899999999999874
No 34
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=2.7e-12 Score=106.85 Aligned_cols=109 Identities=17% Similarity=0.332 Sum_probs=92.1
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++++++++.++++.|.+.+.+.+||+|++|+++|+++..|++.+...... .+.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~-------------~~ 63 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESF-----LEKKVFN-------------IV 63 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhccc-----ccCcHHH-------------Hh
Confidence 46678999999999999999999999999988999999999999875442211 1234555 44
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
..++.++.+++++.+|++.|.+++.+++||+| + |+++|+||+.||++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~di~~ 110 (111)
T cd04626 64 SQDVFYVNEEDTIDEALDIMREKQIGRLPVVD-D-NKLIGVVRTKDILD 110 (111)
T ss_pred cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEhHHhcc
Confidence 45788999999999999999999999999999 4 89999999999974
No 35
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=1.4e-12 Score=109.15 Aligned_cols=111 Identities=22% Similarity=0.348 Sum_probs=89.7
Q ss_pred CeeEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558 350 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 428 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 428 (483)
++.++.+++++.+|++.|.+++ .+.+||+|++|+++|+++..|+++....... +.++.+++...
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~------~~~v~~~~~~~--------- 66 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWA------QTTVIQVMTPA--------- 66 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhcc------ccchhhhhccc---------
Confidence 4678899999999999997665 8899999988999999999999886542211 23455532210
Q ss_pred CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
.++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||..||++
T Consensus 67 --~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~-~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 67 --AKLVTVLSEESLAEVLKLLEEQGLDELAVVE-DSGQVIGLITEADLLR 113 (114)
T ss_pred --ccceEECCCCcHHHHHHHHHHCCCCeeEEEc-CCCcEEEEEeccceec
Confidence 1356899999999999999999999999999 4689999999999875
No 36
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=1.7e-12 Score=108.37 Aligned_cols=113 Identities=20% Similarity=0.293 Sum_probs=92.9
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++.+++++.++++.|.+.+.+.+||+|++++++|+++..|+++.+....+... .+.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~--~~~~v~~-------------~~ 66 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCD--GVATVRD-------------IM 66 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccC--CCccHHH-------------Hh
Confidence 46678999999999999998888999999988999999999999875543221110 1234555 44
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
..++.++.+++++.++++.|.+++.+++||+| + |+++|+||.+||+++
T Consensus 67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~ 114 (114)
T cd04629 67 TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD-D-GKLVGQISRRDVLRA 114 (114)
T ss_pred ccCceEECCCCcHHHHHHHHHHhCCCccCEEE-C-CEEEEEEEHHHHhcC
Confidence 45678899999999999999999999999999 4 899999999999863
No 37
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=2.3e-12 Score=108.98 Aligned_cols=118 Identities=22% Similarity=0.294 Sum_probs=92.1
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
+++++.+++++.+|++.|.+++++++||+++ +| +++|+++.+|+++++...... ....++.+. .
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~---~~---~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~----~ 65 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE---NG---KVVDVYSRFDVINLAKEGAYN------NLDLTVGEA----L 65 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC---CC---eEEEEEeHHHHHHHHhcCccc------cccCCHHHH----H
Confidence 5789999999999999999999999999954 45 899999999999765322110 001111110 0
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.....|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|++|+++
T Consensus 66 --~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 66 --ERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred --hhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 112335567889999999999999999999999999998899999999999874
No 38
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=2.7e-12 Score=107.53 Aligned_cols=114 Identities=18% Similarity=0.292 Sum_probs=90.8
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccc-ccCCccHHHHHhcCCCCCCCccc
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-HLDEMNIHQALQLGQDANPSLGF 428 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~-~l~~~~v~~~l~~~~~~~~~~~~ 428 (483)
.++++..++++.++++.|.+.+++.+||+|++|+++|+++..|+++.......... .+.+.++.+ +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~-------------~ 68 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVID-------------V 68 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHH-------------H
Confidence 46789999999999999999999999999988999999999999886543211110 001234454 4
Q ss_pred CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
|..++.++.+++++.+|++.|.+.+ .+||+| ++|+++|+||..|++++
T Consensus 69 ~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~-~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 69 MNTDVPVIIDDADIEEILHLLIDQP--FLPVVD-DDGIFIGIITRREILKA 116 (116)
T ss_pred hcCCCceecCCCCHHHHHHHHhcCC--ceeEEe-CCCeEEEEEEHHHhhcC
Confidence 5556889999999999999998865 599999 57999999999999863
No 39
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=3.3e-12 Score=106.55 Aligned_cols=110 Identities=20% Similarity=0.352 Sum_probs=91.8
Q ss_pred eeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccCC
Q 011558 351 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG 430 (483)
Q Consensus 351 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~ 430 (483)
+..+.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+....... +.+.++.+ +|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~-------------~~~ 65 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEE----LKDAKVRE-------------VMN 65 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhh----hcCCcHHH-------------hcc
Confidence 5678999999999999999999999999988999999999999874332211 11234555 455
Q ss_pred CcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 431 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 431 ~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
.++.++..++++.++++.|.+++.+++||+| ++|+++|+||..||++
T Consensus 66 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 66 SPVITIDANDSIAKARWLMSNNNISRLPVLD-DKGKVGGIVTEDDILR 112 (113)
T ss_pred CCceEECCCCcHHHHHHHHHHcCCCeeeEEC-CCCeEEEEEEHHHhhc
Confidence 5788999999999999999999999999999 4789999999999975
No 40
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=3.1e-12 Score=110.89 Aligned_cols=114 Identities=15% Similarity=0.234 Sum_probs=92.5
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccc-------------------ccCCc
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-------------------HLDEM 410 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~-------------------~l~~~ 410 (483)
++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+++.......... ...+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 45678999999999999999999999999999999999999999986542211100 00012
Q ss_pred cHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 411 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 411 ~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
++.+ +|..++.++.+++++.++++.|.+.+.+++||++ + |+++|+||.+||++
T Consensus 82 ~v~~-------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~-~~~~Gvit~~di~~ 134 (135)
T cd04621 82 VAED-------------IMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD-N-DNIVGVITKTDICR 134 (135)
T ss_pred cHHH-------------hcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe-C-CEEEEEEEHHHHhh
Confidence 3333 5666788999999999999999999999999999 4 89999999999986
No 41
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.43 E-value=2.1e-12 Score=126.25 Aligned_cols=120 Identities=13% Similarity=0.361 Sum_probs=100.6
Q ss_pred ccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558 342 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 418 (483)
Q Consensus 342 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~ 418 (483)
+|+++|.+ ++.++..++++.++++.+.+++++++||++++ ++++|+++.+|++........ ...+.+
T Consensus 68 ~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~------~~~l~~---- 137 (292)
T PRK15094 68 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE------AFSMDK---- 137 (292)
T ss_pred EEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCC------cCCHHH----
Confidence 45666987 69999999999999999999999999999875 789999999999864431111 123444
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558 419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 482 (483)
Q Consensus 419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~ 482 (483)
+|. +++++.+++++.++++.|.+++.+.++|+| +.|.++|+||+.||++.++|
T Consensus 138 ---------l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD-e~G~viGiVTleDIle~ivG 190 (292)
T PRK15094 138 ---------VLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVID-EFGGVSGLVTIEDILELIVG 190 (292)
T ss_pred ---------HcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEe-CCCCEEEEeEHHHHHHHHhC
Confidence 333 355899999999999999999999999999 57999999999999999986
No 42
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.43 E-value=1.7e-12 Score=134.33 Aligned_cols=116 Identities=15% Similarity=0.231 Sum_probs=101.1
Q ss_pred ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558 342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 421 (483)
Q Consensus 342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~ 421 (483)
++.++|.++++++.+++++.+++++|.+++++.+||+|++++++|+++.+|+.... . ..++.+
T Consensus 90 Kv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~-------~---~~~V~d------- 152 (479)
T PRK07807 90 KSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD-------R---FTQVRD------- 152 (479)
T ss_pred ccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc-------c---CCCHHH-------
Confidence 34566889999999999999999999999999999999999999999999985421 0 134555
Q ss_pred CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558 422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481 (483)
Q Consensus 422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~ 481 (483)
+|..+++++.+++++.+|+++|.+++++++|||| ++++++|+||.+||++...
T Consensus 153 ------iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD-~~g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 153 ------VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVD-ADGRLVGVLTRTGALRATI 205 (479)
T ss_pred ------hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEc-CCCeEEEEEEHHHHHHHhh
Confidence 6667899999999999999999999999999999 4799999999999998754
No 43
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=3.2e-12 Score=109.41 Aligned_cols=116 Identities=23% Similarity=0.395 Sum_probs=92.1
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc-ccc--------ccCCccHHHHHhcCC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQI--------HLDEMNIHQALQLGQ 420 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~-~~~--------~l~~~~v~~~l~~~~ 420 (483)
++.++.+++++.+|+++|.+.+.+.+||+|++|+++|+++..|+..++....+ ... ...+.++.+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 75 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD------ 75 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH------
Confidence 45678999999999999999999999999988999999999999875432111 000 000122333
Q ss_pred CCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeC-CCCeEEEEEehHHHHH
Q 011558 421 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA-GSKRVEGIISLSDVFR 478 (483)
Q Consensus 421 ~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~-~~~~l~GiIs~~DIl~ 478 (483)
+|..+++++.+++++.+++++|.+.+.+.+||++. ++|+++|+||.+||++
T Consensus 76 -------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 76 -------AMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred -------HhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 56667889999999999999999999999999851 4699999999999986
No 44
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=2.9e-12 Score=110.39 Aligned_cols=126 Identities=16% Similarity=0.270 Sum_probs=92.7
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccc--cCCccH--HHHHhcCCCCCCC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH--LDEMNI--HQALQLGQDANPS 425 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~--l~~~~v--~~~l~~~~~~~~~ 425 (483)
++.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|+.+........... ...... .+..+.. ...+
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 79 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKL--LGKK 79 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHH--cCCC
Confidence 467899999999999999988999999999889999999999998865422110000 000000 0000000 0001
Q ss_pred c-ccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 426 L-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 426 ~-~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
. ++|.+++..+.+++++.+++++|.+.+.+++||+| + |+++|+||.+|++++
T Consensus 80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~iGvit~~dl~~~ 132 (132)
T cd04636 80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-D-GKLVGIISRGDIIRS 132 (132)
T ss_pred HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE-C-CEEEEEEEHHHhhcC
Confidence 1 15666788999999999999999999999999999 4 999999999999874
No 45
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=2.3e-12 Score=106.76 Aligned_cols=105 Identities=20% Similarity=0.299 Sum_probs=91.1
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..+++.... +.++.+ +|
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~----------~~~v~~-------------~~ 59 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKDP----------DTTIEK-------------VM 59 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcccc----------cccHHH-------------Hh
Confidence 5678999999999999999999999999999999999999999975210 245565 44
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
..++.++.+++++.+++++|.+++.+.+||+| ++|+++|+||..|+++
T Consensus 60 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~di~~ 107 (108)
T cd04596 60 TKNPITVNPKTSVASVAHMMIWEGIEMLPVVD-DNKKLLGIISRQDVLK 107 (108)
T ss_pred cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEc-CCCCEEEEEEHHHhhc
Confidence 44678999999999999999999999999999 5799999999999986
No 46
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=2.2e-12 Score=109.23 Aligned_cols=116 Identities=16% Similarity=0.294 Sum_probs=92.4
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccc-cccc----ccCCccHHHHHhcCCCCCC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA-YAQI----HLDEMNIHQALQLGQDANP 424 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~-~~~~----~l~~~~v~~~l~~~~~~~~ 424 (483)
++.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|+++...... .... .....++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 71 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEK---------- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHH----------
Confidence 4678999999999999999999999999998899999999999987421110 0000 001223333
Q ss_pred CcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 425 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 425 ~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
+|..++.++.+++++.++++.|.+++.+++||+| ++|+++|++|+.|++++
T Consensus 72 ---~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 72 ---IMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVN-EKDQLVGIVDRHDVLKA 122 (122)
T ss_pred ---HhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEc-CCCcEEEEEEhHHhhcC
Confidence 4555788999999999999999999999999999 47999999999999863
No 47
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.42 E-value=3.8e-12 Score=106.13 Aligned_cols=111 Identities=20% Similarity=0.346 Sum_probs=93.7
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+........ ...++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~----~~~~v~~-------------~~ 64 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSLY----DLVVASD-------------IM 64 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhccccc----ccEEHHH-------------hc
Confidence 467899999999999999998999999999889999999999998765432111 1245555 45
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCC-CCeEEEEEehHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG-SKRVEGIISLSDVFR 478 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~-~~~l~GiIs~~DIl~ 478 (483)
..++.++.+++++.++++.|...+.+++||+| + .++++|+|+..|+++
T Consensus 65 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 65 TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVD-DDPGKLLGILSRSDLLS 113 (114)
T ss_pred cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEe-CCCCEEEEEEEhHHhhc
Confidence 56788999999999999999999999999998 4 589999999999985
No 48
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.42 E-value=1.3e-12 Score=110.76 Aligned_cols=116 Identities=23% Similarity=0.452 Sum_probs=98.6
Q ss_pred CCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccc
Q 011558 255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI 334 (483)
Q Consensus 255 ~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l 334 (483)
.+|..+++++.|++++.+|+++|.+++++.+||+++ + +++|-+|.++|.+.+.+.. ..++++
T Consensus 69 ~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~----~---k~VGsItE~~iv~~~le~~-----------e~i~~~ 130 (187)
T COG3620 69 TIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE----D---KVVGSITENDIVRALLEGM-----------ESIRSL 130 (187)
T ss_pred hhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC----C---eeeeeecHHHHHHHHhccc-----------cchhhh
Confidence 478999999999999999999999999999999954 3 8999999999999875432 122222
Q ss_pred cccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558 335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 398 (483)
Q Consensus 335 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~ 398 (483)
+++++|..+++++++++++..+-+++..+ .++.|+ ++|+++|+||+.|++++..
T Consensus 131 -------~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 131 -------RVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENGKVVGIITKADIMKLLA 184 (187)
T ss_pred -------hHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCCceEEEEeHHHHHHHHh
Confidence 56778999999999999999888888654 578888 5899999999999999765
No 49
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.41 E-value=5.8e-12 Score=104.52 Aligned_cols=108 Identities=24% Similarity=0.373 Sum_probs=91.7
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++..++++.++++.|.+.+++++||+++ |+++|+++..|+++....+.. ..++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~------~~~v~~-------------~~ 61 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLE------LAKVKD-------------VM 61 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcccc------ccCHHH-------------Hh
Confidence 5678899999999999999999999999998 999999999999886543211 134555 34
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
..++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+||..|+++
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 62 TKDVITIDEDEQLYDAIRLMNKHNVGRLIVTD-DEGRPVGIITRTDILR 109 (110)
T ss_pred cCCceEECCCCCHHHHHHHHHhcCCCEEEEEC-CCCCEEEEEEhHHhhc
Confidence 45688999999999999999999999999999 4689999999999975
No 50
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.41 E-value=6.4e-12 Score=104.53 Aligned_cols=110 Identities=18% Similarity=0.288 Sum_probs=91.5
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
+++++..+.++.++++.|.+.+...++|+|+ |+++|+++..|++.....+... .+.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~----~~~~i~~-------------~~ 63 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGLP----SSTPVGE-------------IA 63 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCCC----CCCCHHH-------------Hh
Confidence 4567899999999999999889999999997 8999999999998755432111 1244555 44
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
..++..+.+++++.++++.|.+++.+.+||+| + ++++|+||..|+++|
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~dl~~~ 111 (111)
T cd04589 64 TFPLITVDPDDFLFNALLLMTRHRIHRVVVRE-G-GEVVGVLEQTDLLSF 111 (111)
T ss_pred CCCcEEECCCCcHHHHHHHHHHhCccEEEEee-C-CEEEEEEEhHHhhcC
Confidence 45688999999999999999999999999999 3 899999999999874
No 51
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.41 E-value=6.8e-12 Score=103.80 Aligned_cols=106 Identities=19% Similarity=0.305 Sum_probs=90.7
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++..+.++.++.++++.|.+.+...+||+|++|+++|+++..|++...... .++.+ +|
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~---------~~v~~-------------~~ 60 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKEA---------KSLED-------------IM 60 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhcC---------CcHhH-------------hh
Confidence 466789999999999999999999999999889999999999998744211 23444 34
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
...+.++.+++++.++++.|.+.+.+++||+| ++|+++|+||.+|+++
T Consensus 61 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~-~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 61 LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVD-EDGKLVGLITRSSLVD 108 (109)
T ss_pred cCCceEECCCCcHHHHHHHHHHcCCceeeEEC-CCCeEEEEEehHHhhc
Confidence 45678899999999999999999999999999 4789999999999975
No 52
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.41 E-value=6.6e-12 Score=104.37 Aligned_cols=108 Identities=16% Similarity=0.359 Sum_probs=90.9
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 428 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 428 (483)
++.++.+++++.+|++.|.+.+.+.+||++++ |+++|+++..|+++....... ..++.. +
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~------~~~~~~-------------~ 62 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE------DLDLRD-------------L 62 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC------cCCHHH-------------H
Confidence 46789999999999999999899999999988 999999999999986653221 023333 2
Q ss_pred CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
+ .++.++.+++++.++++.|.+++.+++||+| ++|+++|+||++|+++
T Consensus 63 ~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~di~~ 110 (111)
T cd04590 63 L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVD-EYGGTAGLVTLEDILE 110 (111)
T ss_pred h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEE-CCCCEEEEeEHHHhhc
Confidence 2 2577899999999999999999999999999 4799999999999975
No 53
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=2.9e-12 Score=110.83 Aligned_cols=116 Identities=22% Similarity=0.372 Sum_probs=93.1
Q ss_pred CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccc------cc------------ccCCc
Q 011558 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA------QI------------HLDEM 410 (483)
Q Consensus 349 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~------~~------------~l~~~ 410 (483)
+++.++.+++++.++++.|.+.+.+.+||+|++++++|+++..|+.+........ .. .....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR 81 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence 3577899999999999999999999999999889999999999998754322100 00 00012
Q ss_pred cHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 411 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 411 ~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
++.+ +|..++.++.+++++.++++.|.+.+.+++||+| +|+++|+||+.|++++
T Consensus 82 ~v~~-------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~~ 135 (135)
T cd04586 82 KVAD-------------VMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLRA 135 (135)
T ss_pred CHHH-------------HhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhcC
Confidence 2222 5666788999999999999999999999999999 4999999999999863
No 54
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.40 E-value=5.1e-12 Score=105.47 Aligned_cols=111 Identities=15% Similarity=0.302 Sum_probs=92.8
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++++++..... ....++.+ +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~----~~~~~v~~-------------~~ 65 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLD----ILTLPVAD-------------VM 65 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCc----cccCCHHH-------------hh
Confidence 45678999999999999988888999999988999999999999987653221 11234555 44
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
..+..++.+++++.+++++|..++.+.+||+| ++++++|+|+..||++
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~iG~it~~di~~ 113 (114)
T cd04604 66 TRNPKTIDPDALAAEALELMEENKITALPVVD-DNGRPVGVLHIHDLLR 113 (114)
T ss_pred ccCCeEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCCEEEEEEHHHhhc
Confidence 45677899999999999999999999999999 4699999999999986
No 55
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.40 E-value=1.5e-11 Score=128.96 Aligned_cols=221 Identities=18% Similarity=0.257 Sum_probs=146.8
Q ss_pred eeeceeCCCCceeEEeeHHHHHHHHHHhccCC---CCCCHHHHhhccHHHHHHHHhhhhccccCCCCCCCCCCCeEEeCC
Q 011558 190 MVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP 266 (483)
Q Consensus 190 s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~ 266 (483)
.+|++.+. .+.+|..++...+...+..+ .+++.++... .++..+.. +..+..+++++.+
T Consensus 41 ~~Piv~a~----m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~----~I~~vk~~----------~dim~~~~v~i~~ 102 (486)
T PRK05567 41 NIPLLSAA----MDTVTEARMAIAMAREGGIGVIHKNMSIEEQAE----EVRKVKRS----------ESGVVTDPVTVTP 102 (486)
T ss_pred CcCEEeCC----CCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHH----HHHHhhhh----------hhcccCCCeEeCC
Confidence 48888753 23457788877776544321 2222222111 11111111 1245678999999
Q ss_pred CCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccccccccccc
Q 011558 267 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEA 346 (483)
Q Consensus 267 ~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~ 346 (483)
++++.+|++.|.+++++++||+++ ++ +++|++|.+|++... . ... .+.++
T Consensus 103 ~~tv~ea~~~m~~~~~~~lpVvd~---~g---~lvGiVt~~DL~~~~-----~-------~~~------------~V~di 152 (486)
T PRK05567 103 DTTLAEALALMARYGISGVPVVDE---NG---KLVGIITNRDVRFET-----D-------LSQ------------PVSEV 152 (486)
T ss_pred CCCHHHHHHHHHHhCCCEEEEEcc---CC---EEEEEEEHHHhhhcc-----c-------CCC------------cHHHH
Confidence 999999999999999999999954 45 899999999985321 0 112 23445
Q ss_pred cC-CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCC
Q 011558 347 NG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS 425 (483)
Q Consensus 347 m~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~ 425 (483)
|. ++++++.+++++.++++.|.+++++.+||+|++|+++|++|.+||++...........-.++.+..
T Consensus 153 m~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~a----------- 221 (486)
T PRK05567 153 MTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGA----------- 221 (486)
T ss_pred cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEe-----------
Confidence 77 688999999999999999999999999999999999999999999985432100000000011111
Q ss_pred cccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 426 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 426 ~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
.+...+ ++ .+.++.|.+.+++ ++|+|..+++..|+++.-+.++.
T Consensus 222 -------ai~~~~-~~-~e~a~~L~~agvd-vivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 222 -------AVGVGA-DN-EERAEALVEAGVD-VLVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred -------ecccCc-ch-HHHHHHHHHhCCC-EEEEECCCCcchhHHHHHHHHHh
Confidence 112222 22 6778889999998 55777556888887776666654
No 56
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.40 E-value=6.5e-12 Score=104.25 Aligned_cols=109 Identities=24% Similarity=0.368 Sum_probs=91.6
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+........ ...+.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~-----~~~~~~-------------~~ 62 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREA-----TVLVGD-------------VM 62 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCccc-----ccCHHH-------------hc
Confidence 5678999999999999999888999999997 9999999999998755432111 123333 45
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
..++.++..++++.+++++|.+++.+++||+| ++|+++|+||..||++
T Consensus 63 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~it~~di~~ 110 (111)
T cd04612 63 TRDPVTASPDETLRDALKRMAERDIGRLPVVD-DSGRLVGIVSRSDLLR 110 (111)
T ss_pred cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEc-CCCCEEEEEEHHHhhh
Confidence 56788999999999999999999999999999 4699999999999986
No 57
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.40 E-value=8.5e-12 Score=103.73 Aligned_cols=109 Identities=20% Similarity=0.333 Sum_probs=90.7
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++..+.++.++.+.|.+.+.+.+||+|+ ++++|+++..|++......... .+.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~----~~~~i~~-------------~~ 63 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGLD----PDTPVSE-------------VM 63 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCCC----ccCCHHH-------------Hh
Confidence 5678899999999999999888999999997 9999999999998743322111 1234555 44
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
..++.++.+++++.++++.|.+++.+++||++ + |+++|+||.+||++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Giit~~di~~ 110 (111)
T cd04800 64 TAPPITIPPDATVFEALLLMLERGIHHLPVVD-D-GRLVGVISATDLLR 110 (111)
T ss_pred CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEHHHhhc
Confidence 45788999999999999999999999999999 4 89999999999985
No 58
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=9.4e-12 Score=103.35 Aligned_cols=108 Identities=23% Similarity=0.449 Sum_probs=92.2
Q ss_pred CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 428 (483)
Q Consensus 349 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 428 (483)
+++.++..+.++.++.+.|.+.+.+.+||+|+ |+++|+++..|+.+...... ...++.+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~~------~~~~~~~-------------~ 61 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGL------GHAPVKD-------------Y 61 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhccc------ccCcHHH-------------H
Confidence 35778999999999999999889999999997 99999999999987553221 1345666 4
Q ss_pred CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
|..++.++.+++++.+++++|.+++.+++||+| +|+++|+||..|+++
T Consensus 62 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~ 109 (110)
T cd04595 62 MSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR 109 (110)
T ss_pred hcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence 445688999999999999999999999999999 489999999999975
No 59
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=5.3e-12 Score=107.28 Aligned_cols=121 Identities=17% Similarity=0.249 Sum_probs=92.4
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++.++.+++++.+|++.|.+++++++||+++ .+| +++|+++..|+++++.................+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~-------- 68 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE--ESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIPL-------- 68 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeC--CCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhhh--------
Confidence 5678999999999999999889999999954 225 799999999999876433211000000000000
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.+.++|..++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||.+|+..
T Consensus 69 --~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~~ 122 (123)
T cd04627 69 --RDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVRL 122 (123)
T ss_pred --hhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhhc
Confidence 112346778899999999999999999999999999998899999999999863
No 60
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.40 E-value=1.9e-12 Score=138.30 Aligned_cols=288 Identities=13% Similarity=0.149 Sum_probs=175.2
Q ss_pred ccccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhccH
Q 011558 155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI 234 (483)
Q Consensus 155 ~~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~~l~~~~l~~~~i 234 (483)
.++.|+| ..++++++.+.|+.+|++.|.++++..+||.|.+ ++++|++|..|++..+...... ..+. .+ ..++
T Consensus 68 ~~V~dim--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~-~~~~--~~-~~t~ 140 (546)
T PRK14869 68 PQVRDLE--IDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDP-EILS--KS-PTSL 140 (546)
T ss_pred CcHHHhc--CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcch-hhhh--hc-CCCH
Confidence 5677877 3589999999999999999999999999999965 5699999999999866543210 0000 00 0111
Q ss_pred HHHHHHHhh--h-hcc-------cc-------CCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCC--
Q 011558 235 SAWKVGKLQ--L-NLK-------RQ-------MDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAG-- 295 (483)
Q Consensus 235 ~~~~~~~~~--~-~~~-------~~-------~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g-- 295 (483)
..+.+.... + +.. .. ...........++.+.....+ ...+.+.+++.++|+....-..
T Consensus 141 ~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~---~~~ai~~~~~~lIlt~g~~~~~~v 217 (546)
T PRK14869 141 ENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDI---QLAAIEAGVRLLIITGGAPVSEDV 217 (546)
T ss_pred HHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHH---HHHHHHcCCCEEEECCCCCCCHHH
Confidence 111110000 0 000 00 000000112335555443333 3356788899998885321000
Q ss_pred ----CcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccccccccccccC-CCeeEecCCCCHHHHHHHHHhC
Q 011558 296 ----SCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG-RPFAMLRPTASLGSALALLVQA 370 (483)
Q Consensus 296 ----~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~~m~~~ 370 (483)
....+.++.|..|.......-. ... .++++|. +++.++.+++++.++.+.|.++
T Consensus 218 ~~la~~~~i~ii~t~~dt~~t~~~l~---------~~~------------~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~ 276 (546)
T PRK14869 218 LELAKENGVTVISTPYDTFTTARLIN---------QSI------------PVSYIMTTEDLVTFSKDDYLEDVKEVMLKS 276 (546)
T ss_pred HHHHHhCCCeEEEecccHHHHHHHhh---------cCC------------CHHHhccCCCcEEECCCCcHHHHHHHHHhc
Confidence 0014778888888766543211 112 3556698 8899999999999999999999
Q ss_pred CCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHH---HhcCC----CCCCCc-ccCCCcceEE---eCC
Q 011558 371 DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA---LQLGQ----DANPSL-GFNGQRCQMC---LRS 439 (483)
Q Consensus 371 ~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~---l~~~~----~~~~~~-~~m~~~~~~v---~~~ 439 (483)
+++.+||+|++|+++|++|++|++........- +......+. +.... -...+. +++...++.+ ...
T Consensus 277 ~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iL---VD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~g 353 (546)
T PRK14869 277 RYRSYPVVDEDGKVVGVISRYHLLSPVRKKVIL---VDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVG 353 (546)
T ss_pred CCCceEEEcCCCCEEEEEEHHHhhccccCceEE---EcCccccccccchhhceEEEEecCCccCCCCCCCCcEEEeeeee
Confidence 999999999999999999999999854421100 000000000 00000 001111 2454444433 346
Q ss_pred CCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 440 DPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 440 ~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
.+...+.++|.+.++...+++. ...+.||+|-++.++
T Consensus 354 st~tiv~~~~~~~~i~~~~~ia--~~ll~gIlsDT~~f~ 390 (546)
T PRK14869 354 STSTIVARMYRENGIEPSPEIA--GLLLAAILSDTLLFK 390 (546)
T ss_pred eHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHHhcCcc
Confidence 7777889999999998777776 356888888777664
No 61
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=3.9e-12 Score=108.69 Aligned_cols=112 Identities=21% Similarity=0.389 Sum_probs=87.1
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH-----HhcccccccccCCccHHHHHhcCCCCCC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL-----AKDKAYAQIHLDEMNIHQALQLGQDANP 424 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l-----~~~~~~~~~~l~~~~v~~~l~~~~~~~~ 424 (483)
++.++..++++.++++.|.+.+...+||+|++|+++|+++..|+.+. ...+ + ....+.++.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~-~--~~~~~~~v~~---------- 68 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEG-G--ISRSELTVAD---------- 68 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHc-C--CCchheEHHH----------
Confidence 46788999999999999998999999999988999999999999862 1111 0 0011244555
Q ss_pred CcccCCCcceE--E----eCCCCHHHHHHHHHcCCCCEEEEEeCCC-CeEEEEEehHHHHH
Q 011558 425 SLGFNGQRCQM--C----LRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFR 478 (483)
Q Consensus 425 ~~~~m~~~~~~--v----~~~~tl~~~~~~m~~~~~~~l~VVd~~~-~~l~GiIs~~DIl~ 478 (483)
+|.++... + .+++++.+++++|.+++.+++||+| ++ |+++|+||++||++
T Consensus 69 ---im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd-~~~~~~~G~it~~di~~ 125 (126)
T cd04640 69 ---VMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVD-REHHQIRGIISTSDIAR 125 (126)
T ss_pred ---hcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEE-CCCCEEEEEEeHHHHhh
Confidence 44333322 2 3689999999999999999999999 45 79999999999986
No 62
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.39 E-value=7.3e-12 Score=104.89 Aligned_cols=110 Identities=18% Similarity=0.315 Sum_probs=88.5
Q ss_pred CeeEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558 350 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 428 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 428 (483)
++.++..+.++.++++.|.+.+ ...++|+| +|+++|+++..|+++....... ..+.++.+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~-------------~ 63 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGKD----LSDLPIGE-------------V 63 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCCC----ccccCHHH-------------h
Confidence 4567899999999999998877 66777777 5899999999999885543211 11234555 4
Q ss_pred CCCcceEEeCC--CCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 429 NGQRCQMCLRS--DPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 429 m~~~~~~v~~~--~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
|..++.++.++ +++.+++++|.+++.+++||+| ++|+++|+||++|+++
T Consensus 64 ~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd-~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 64 MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLD-DQGQLIGLVTAESIRQ 114 (115)
T ss_pred cCCCcEEEecccccCHHHHHHHHHHhCCceEEEEc-CCCCEEEEEEhHHhhc
Confidence 44567788877 7899999999999999999999 4799999999999986
No 63
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=5.3e-12 Score=105.32 Aligned_cols=108 Identities=15% Similarity=0.186 Sum_probs=89.5
Q ss_pred eEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccccc
Q 011558 261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 340 (483)
Q Consensus 261 ~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~ 340 (483)
++++.+++++.+|++.|.+++.+.+||+++ +| +++|+++..|+++... . .....+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~----~-----~~~~~~---------- 57 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVVDE---EN---KVLGQVTLSDLLEIGP----N-----DYETLK---------- 57 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHhhcc----c-----cccccC----------
Confidence 578899999999999999999999999954 45 8999999999876311 0 001112
Q ss_pred cccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 341 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
+.++|..++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 58 --v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 58 --VCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred --hhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 34447778889999999999999999999999999998899999999999875
No 64
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.39 E-value=1.1e-11 Score=102.89 Aligned_cols=109 Identities=22% Similarity=0.307 Sum_probs=92.1
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++.+++++.+|++.|.+.+.+.+||+|+ ++++|+++..|+.+....+.. .+.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~-------------~~ 62 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD-----LQTPVGE-------------VM 62 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC-----CCcCHHH-------------hc
Confidence 4567899999999999999888999999986 999999999999886643321 1245555 45
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
..+++++.+++++.++++.|.+.+.+.+||+| ++|+++|+|+.+||++
T Consensus 63 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 63 SSPLLTVPADTSLYDARQLMREHGIRHLVVVD-DDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCCceEECCCCCHHHHHHHHHHcCCeEEEEEC-CCCcEEEEEEhHHhhc
Confidence 55788999999999999999999999999999 4699999999999985
No 65
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.39 E-value=1.5e-11 Score=131.46 Aligned_cols=194 Identities=18% Similarity=0.175 Sum_probs=134.2
Q ss_pred CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccc-----
Q 011558 256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP----- 330 (483)
Q Consensus 256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~----- 330 (483)
+|.++++++.+++++.+|++.|.+++++.+||+++ +| +++|++|..||.+.+...... ..+.....+
T Consensus 73 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~l~Givt~~di~~~~~~~~~~--~~~~~~~~t~~~i~ 144 (546)
T PRK14869 73 LEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDE---EG---KLLGLVSLSDLARAYMDILDP--EILSKSPTSLENII 144 (546)
T ss_pred hcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHhhcch--hhhhhcCCCHHHHH
Confidence 45678999999999999999999999999999964 45 899999999999877543210 000111111
Q ss_pred -----------------cccccccccc-cccccccCCC-eeEecCCCCHHHHHHHHHhCCCCEEEEEcCCC---------
Q 011558 331 -----------------VSSIQLGTWV-PRIGEANGRP-FAMLRPTASLGSALALLVQADVSSIPIVDDND--------- 382 (483)
Q Consensus 331 -----------------v~~l~i~~~~-~~v~~~m~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g--------- 382 (483)
...+.++... ..+.+.|.+. ++.+... .+++..+.+.+++++.|+....
T Consensus 145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr---~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la 221 (546)
T PRK14869 145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDR---EDIQLAAIEAGVRLLIITGGAPVSEDVLELA 221 (546)
T ss_pred HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCc---HHHHHHHHHcCCCEEEECCCCCCCHHHHHHH
Confidence 1111111111 1122334443 4444333 4455567888999998886432
Q ss_pred ---cEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccCC-CcceEEeCCCCHHHHHHHHHcCCCCEEE
Q 011558 383 ---SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLV 458 (483)
Q Consensus 383 ---~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~-~~~~~v~~~~tl~~~~~~m~~~~~~~l~ 458 (483)
.+.++.|..|.......- . ...++.+ +|. +++.++.+++++.++.+.|.+++.+++|
T Consensus 222 ~~~~i~ii~t~~dt~~t~~~l-~-----~~~~V~~-------------iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~P 282 (546)
T PRK14869 222 KENGVTVISTPYDTFTTARLI-N-----QSIPVSY-------------IMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYP 282 (546)
T ss_pred HhCCCeEEEecccHHHHHHHh-h-----cCCCHHH-------------hccCCCcEEECCCCcHHHHHHHHHhcCCCceE
Confidence 466777777766643311 0 0245555 777 7899999999999999999999999999
Q ss_pred EEeCCCCeEEEEEehHHHHHHH
Q 011558 459 IVEAGSKRVEGIISLSDVFRFL 480 (483)
Q Consensus 459 VVd~~~~~l~GiIs~~DIl~~l 480 (483)
||| ++|+++|+||++|+++..
T Consensus 283 Vvd-~~g~lvGiit~~dl~~~~ 303 (546)
T PRK14869 283 VVD-EDGKVVGVISRYHLLSPV 303 (546)
T ss_pred EEc-CCCCEEEEEEHHHhhccc
Confidence 999 579999999999999753
No 66
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.39 E-value=7e-12 Score=104.52 Aligned_cols=111 Identities=17% Similarity=0.306 Sum_probs=90.7
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++.+++++.++++.|.+++.+.+||+++ |+++|+++..|++.......... ...++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~---~~~~v~~-------------i~ 64 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDP---ESTLVER-------------VM 64 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCc---CcCCHHH-------------hc
Confidence 4667899999999999999889999999997 99999999999985332111110 0134555 55
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
..++.++.+++++.++++.|.+++.+++||+| ++++++|+||..||+.
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 65 TPNPVCATSDTPVLEALHLMVQGKFRHLPVVD-KSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCCCeEEcCCCCHHHHHHHHHHcCCCcccEEC-CCCCEEEEEEHHHhcc
Confidence 55788999999999999999999999999999 4699999999999975
No 67
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.39 E-value=4e-12 Score=136.46 Aligned_cols=123 Identities=18% Similarity=0.237 Sum_probs=103.4
Q ss_pred ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558 342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 421 (483)
Q Consensus 342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~ 421 (483)
+++|+|++++.++++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.+........ .+.++.+
T Consensus 448 ~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~----~~~~v~d------- 516 (574)
T PRK01862 448 QMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDT----TDKTAAD------- 516 (574)
T ss_pred cHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccccc----ccchHHH-------
Confidence 57788999999999999999999999999999999999999999999999998744322110 1234454
Q ss_pred CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCC-CeEEEEEehHHHHHHHh
Q 011558 422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFRFLL 481 (483)
Q Consensus 422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~-~~l~GiIs~~DIl~~l~ 481 (483)
+|.+++.++.+++++.+++++|.+++.+++||||+++ ++++|+||++|+++++.
T Consensus 517 ------im~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 517 ------YAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred ------hccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 5666788999999999999999999999999999432 58999999999999875
No 68
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=6.3e-12 Score=106.21 Aligned_cols=114 Identities=16% Similarity=0.346 Sum_probs=91.6
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccc------cccCCccHHHHHhcCCCCC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ------IHLDEMNIHQALQLGQDAN 423 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~------~~l~~~~v~~~l~~~~~~~ 423 (483)
++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..++.+......... ..+...++.+
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSD--------- 71 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHH---------
Confidence 4678899999999999999999999999996 99999999999987544211100 0011123333
Q ss_pred CCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 424 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 424 ~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
+|..+..++.+++++.+++++|.+.+.+++||+| + |+++|+||.+|++++
T Consensus 72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 72 ----IMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD-D-GKLVGIVTRTDILRY 121 (121)
T ss_pred ----HccCCceEECCCCcHHHHHHHHHHcCCCcccEEE-C-CEEEEEEEHHHhhcC
Confidence 5566788999999999999999999999999999 4 899999999999863
No 69
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=1e-11 Score=103.56 Aligned_cols=110 Identities=23% Similarity=0.396 Sum_probs=90.6
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHH-HHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 428 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~-~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 428 (483)
++.++.+++++.+|++.|.+.+.+.+||+|+ |+++|+++..|++ +....+... ...++.+ +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~~----~~~~~~~-------------~ 63 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRDP----DTTTVGD-------------V 63 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCCc----ccCCHHH-------------h
Confidence 4678999999999999999999999999997 9999999999987 333322111 1123554 4
Q ss_pred CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
|...+.++.+++++.++++.|.+.+.+++||+| ++|+++|+|+..|+++
T Consensus 64 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~it~~di~~ 112 (113)
T cd04622 64 MTRGVVTVTEDDDVDEAARLMREHQVRRLPVVD-DDGRLVGIVSLGDLAR 112 (113)
T ss_pred ccCCccEECCCCCHHHHHHHHHHcCCCeeeEEC-CCCcEEEEEEHHHhhc
Confidence 555688899999999999999999999999999 4699999999999976
No 70
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=8.7e-12 Score=104.50 Aligned_cols=111 Identities=17% Similarity=0.223 Sum_probs=91.5
Q ss_pred eEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccccc
Q 011558 261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 340 (483)
Q Consensus 261 ~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~ 340 (483)
+.++.+++++.+|++.|.+++...+||+++ +| +++|+++..|+++.+...... ....
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~g---~~~G~vt~~dl~~~~~~~~~~------~~~~----------- 59 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP---HG---KLAGVLTKTDVVRQMGRCGGP------GCTA----------- 59 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------cccC-----------
Confidence 567899999999999999999999999954 45 799999999998765321000 0112
Q ss_pred cccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 341 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.+.++|..++.++.+++++.+|++.|.+++...+||+|++|+++|+++++|+++
T Consensus 60 -~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 60 -PVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred -CHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 234458888999999999999999999999999999998899999999999864
No 71
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.38 E-value=9.5e-12 Score=104.96 Aligned_cols=114 Identities=23% Similarity=0.340 Sum_probs=91.8
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccc------cCCccHHHHHhcCCCCC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH------LDEMNIHQALQLGQDAN 423 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~------l~~~~v~~~l~~~~~~~ 423 (483)
++.++.++.++.++++.|.+.+...+||+|+ |+++|+++..|+............. ..+.++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSD--------- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHH---------
Confidence 4677899999999999999999999999997 9999999999998755422110000 00122332
Q ss_pred CCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 424 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 424 ~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
+|..+..++.+++++.++++.|.+.+.+++||+| ++|+++|+||..||++
T Consensus 72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 72 ----IMTRDPITVSPDASVEEAAELMLERKISGLPVVD-DQGRLVGIITESDLFR 121 (122)
T ss_pred ----hccCCCeEeCCCCcHHHHHHHHHHcCCCceeEEC-CCCcEEEEEEHHHhhh
Confidence 5666788999999999999999999999999999 4699999999999986
No 72
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=1.4e-11 Score=102.51 Aligned_cols=111 Identities=14% Similarity=0.279 Sum_probs=89.2
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
.+.++.+++++.++++.|.+++.+.++|.+ +|+++|+++.+|+++........ +.+.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~~---~~~~~v~~-------------~~ 64 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGAG---VLDTTVRA-------------IM 64 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCCc---hhcCCHHH-------------Hh
Confidence 356789999999999999888887887776 59999999999998755421100 11234555 44
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
..++.++.+++++.+++++|.+++..++||+| +|+++|+||.+||+++
T Consensus 65 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~~~~~Gvvt~~dl~~~ 112 (112)
T cd04625 65 NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD--GGTLLGVISFHDVAKA 112 (112)
T ss_pred CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE--CCEEEEEEEHHHhhcC
Confidence 45678899999999999999999999999999 3899999999999863
No 73
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.37 E-value=4.9e-12 Score=131.41 Aligned_cols=172 Identities=13% Similarity=0.150 Sum_probs=131.4
Q ss_pred ccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHh-----CCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCC
Q 011558 248 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQ-----NKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS 322 (483)
Q Consensus 248 ~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~-----~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~ 322 (483)
+..+.+|.+|..+++++++++++.+|++.|.+ ++...++|+|+ ++ +++|+++.+|++.. .
T Consensus 128 ~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~---~~---~l~GvV~l~dLl~a------~--- 192 (449)
T TIGR00400 128 YSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE---SK---HLKGVLSIRDLILA------K--- 192 (449)
T ss_pred CCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC---CC---eEEEEEEHHHHhcC------C---
Confidence 55667778899999999999999999999975 45677888854 34 89999999998641 0
Q ss_pred CCcccccccccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc
Q 011558 323 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY 402 (483)
Q Consensus 323 ~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~ 402 (483)
... .++++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|++|.+|+++...+..
T Consensus 193 ----~~~------------~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~- 255 (449)
T TIGR00400 193 ----PEE------------ILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA- 255 (449)
T ss_pred ----CCC------------cHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh-
Confidence 011 244558888999999999999999999999999999999999999999999998765321
Q ss_pred cccccCCccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 403 AQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 403 ~~~~l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
.++... ...+++.+++++.+++..|.+++...++|.- +.|++| ..++..
T Consensus 256 ---------~ed~~~-------------~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~~-----~~~~~t-~~ii~~ 304 (449)
T TIGR00400 256 ---------TEDFYM-------------IAAVKPLDDSYFDTSILVMAKNRIIWLLVLL-----VSSTFT-ATIISN 304 (449)
T ss_pred ---------HHHHHH-------------hcCCCCCcchhhhchHHHHHHhccchHHHHH-----HHHHHH-HHHHHH
Confidence 133222 1233445678889999999999987776652 456666 555544
No 74
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=1e-11 Score=105.38 Aligned_cols=122 Identities=19% Similarity=0.358 Sum_probs=95.6
Q ss_pred CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (483)
Q Consensus 259 ~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 338 (483)
+++.++.+++++.++++.|.+++++++||+++ +| +++|+++..++++++...... .....++ ...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~--~~~~~~~-------~~~ 66 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDG---DR---RLVGIVTQRDLLRHARPDGRR--PLRGRLR-------GRD 66 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECC---CC---CEEEEEEHHHHHhhhcccccc--hhhhhhh-------ccc
Confidence 46788999999999999999999999999954 35 899999999998766422110 0000000 111
Q ss_pred cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
....+.++|.+.+.++.+++++.+++++|.+.+.+.+||+|++|+++|+++.+|+++
T Consensus 67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 122456668888999999999999999999999999999998999999999999874
No 75
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.36 E-value=1.7e-11 Score=102.67 Aligned_cols=106 Identities=22% Similarity=0.324 Sum_probs=87.7
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCc
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 426 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~ 426 (483)
++.++.+++++.++++.|.+.+...+||+|+ +|+++|+++..|++.... . ..++.+
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~--------~~~v~~------------ 61 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-S--------ETPLSE------------ 61 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-c--------CCCHHH------------
Confidence 4567899999999999999888899999997 789999999999875321 1 123555
Q ss_pred ccCCCcceEEeC--CCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 427 GFNGQRCQMCLR--SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 427 ~~m~~~~~~v~~--~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
+|......+.. ++++.++++.|.+++.+.+|||| ++|+++|+||++||++
T Consensus 62 -~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~-~~~~~~Gvit~~di~~ 113 (114)
T cd04602 62 -VMTPREVLVVAPTGITLEEANEILRESKKGKLPIVN-DDGELVALVTRSDLKK 113 (114)
T ss_pred -hcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEEC-CCCeEEEEEEHHHhhc
Confidence 44445566666 99999999999999999999999 5799999999999975
No 76
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.35 E-value=9.6e-12 Score=104.92 Aligned_cols=111 Identities=19% Similarity=0.310 Sum_probs=90.3
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++.++.+++++.+|++.|.++++..+||+++ ++ +++|+++..|+++...... . ....
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~Givt~~dl~~~~~~~~-~------~~~~---------- 58 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE---DG---DLVGVVSRKDLLKASIGGA-D------LQKV---------- 58 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHcCC-C------ccCC----------
Confidence 5688999999999999999999999999954 35 7999999999988764210 0 0011
Q ss_pred ccccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiit~~di~~ 395 (483)
.+.++|.+ ++.++.+++++.+++++|.+++++.+||+|++ |+++|++|++|+.+
T Consensus 59 --~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 59 --PVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred --CHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 23344664 68899999999999999999999999999976 69999999999865
No 77
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.35 E-value=1.1e-11 Score=102.75 Aligned_cols=106 Identities=20% Similarity=0.387 Sum_probs=88.3
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++..+.++.++++.|.+.+.+.+||+|++|+++|+++.+++..... .+.++.+ +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~---------~~~~v~~-------------~~ 60 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD---------LDKPVSE-------------VM 60 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc---------CCCCHHH-------------hc
Confidence 5678899999999999999899999999998899999999999864211 1245555 34
Q ss_pred CCcceEEeC-CCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 430 GQRCQMCLR-SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 430 ~~~~~~v~~-~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
...+..+.+ ++++.+++++|.+.+.+++||+| ++|+++|+||.+|+++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 61 TPENLLTTVEGTSLEEALELLHEHKIEKLPVVD-DEGKLKGLITVKDIEK 109 (110)
T ss_pred ccCceEEecCCCCHHHHHHHHHHhCCCeeeEEc-CCCCEEEEEEhhhhhc
Confidence 334556667 99999999999999999999999 5799999999999985
No 78
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.35 E-value=3e-11 Score=100.55 Aligned_cols=110 Identities=15% Similarity=0.315 Sum_probs=89.9
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++.+++++.++++.|.+.+.+.+||+|+ ++++|+++..|+++....+.... .+.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~---~~~~~~~-------------~~ 64 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLKP---REVPVGE-------------VM 64 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCCc---ccCCHHH-------------hc
Confidence 4667899999999999999989999999995 59999999999998543221111 1234555 45
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
..++.++.+++++.+++++|.+++.+.+||+| + ++++|+||++||++
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvi~~~di~~ 111 (112)
T cd04802 65 STPLITIDPNASLNEAAKLMAKHGIKRLPVVD-D-DELVGIVTTTDIVM 111 (112)
T ss_pred CCCcEEECCCCCHHHHHHHHHHcCCCeeEEee-C-CEEEEEEEhhhhhc
Confidence 55788999999999999999999999999999 3 49999999999975
No 79
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.35 E-value=1.3e-11 Score=126.50 Aligned_cols=118 Identities=12% Similarity=0.244 Sum_probs=100.7
Q ss_pred ccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558 342 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 418 (483)
Q Consensus 342 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~ 418 (483)
+++++|.+ ++.+++.++++.++++.+.+++++++||++++ ++++|+++.+|++...... ...+.+
T Consensus 192 ~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~--------~~~l~~---- 259 (408)
T TIGR03520 192 DTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK--------NFDWQS---- 259 (408)
T ss_pred EeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC--------CCCHHH----
Confidence 56677986 78999999999999999999999999999864 6899999999998643321 123444
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558 419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 482 (483)
Q Consensus 419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~ 482 (483)
+|. ++.++.+++++.++++.|.+++.|..+|+| +.|.++|+||..||++.++|
T Consensus 260 ---------~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD-E~G~~~GiVT~eDileeivg 312 (408)
T TIGR03520 260 ---------LLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVD-EYGGTSGLVTLEDIIEEIVG 312 (408)
T ss_pred ---------HcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEc-CCCCEEEEEEHHHHHHHHhC
Confidence 332 577999999999999999999999999999 68999999999999999976
No 80
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=2.1e-11 Score=102.04 Aligned_cols=112 Identities=16% Similarity=0.270 Sum_probs=91.5
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++..+.+++++.+|++.|.+++.+.+||+++ ..+ +++|+++.+|+++++...... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~---~~~G~v~~~dl~~~~~~~~~~------~~~~---------- 60 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR--RES---DAYGIVTMRDILKKVVAEGRD------PDRV---------- 60 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CCC---cEEEEEehHHHHHHHHhCCCC------CCcc----------
Confidence 4678999999999999999999999999954 225 799999999999876432110 0011
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.+.++|..++.++.+++++.++++.|.+.+...+||+|+ |+++|++++.|+++
T Consensus 61 --~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 61 --NVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred --CHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 234457778999999999999999999999999999997 99999999999874
No 81
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=9.3e-12 Score=103.30 Aligned_cols=103 Identities=21% Similarity=0.313 Sum_probs=86.2
Q ss_pred ecCCCCHHHHHHHHHhCC-----CCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558 354 LRPTASLGSALALLVQAD-----VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 428 (483)
Q Consensus 354 v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 428 (483)
+.+++++.++++.|.+++ +..+||+|++|+++|+++.+++++. . .+.++.+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~---~-------~~~~v~~-------------~ 58 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA---D-------PDTPVSD-------------I 58 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC---C-------CcchHHH-------------H
Confidence 567889999999998776 4789999988999999999998752 0 0234555 3
Q ss_pred CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558 429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 480 (483)
Q Consensus 429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l 480 (483)
|..++..+.+++++.++++.|..++.+.+||+| ++++++|+||..|+++++
T Consensus 59 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~dll~~~ 109 (109)
T cd04606 59 MDTDVISVSADDDQEEVARLFEKYDLLALPVVD-EEGRLVGIITVDDVIDVI 109 (109)
T ss_pred hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeEC-CCCcEEEEEEhHHhhhhC
Confidence 444688999999999999999999999999999 479999999999999864
No 82
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.34 E-value=1.9e-11 Score=101.15 Aligned_cols=109 Identities=19% Similarity=0.374 Sum_probs=87.8
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++..++++.++++.|.+++.+.+||+|+ |+++|+++..|+.+........ . +.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~-~---~~~~~~-------------~~ 63 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAK-F---SLPVRE-------------VM 63 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccccc-c---CcCHHH-------------Hh
Confidence 4567899999999999999999999999997 9999999999999865432111 0 234555 34
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
..++.++.+++++.+++++|.+ . +.+||++ ++|+++|+||++||+++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~-~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 64 GEPLPTVDPDAPIEELSELLDR-G-NVAVVVD-EGGKFVGIITRADLLKY 110 (110)
T ss_pred cCCCceeCCCCcHHHHHHHHHh-C-CceeEEe-cCCeEEEEEeHHHhhcC
Confidence 4467889999999999999988 3 3478888 47999999999999874
No 83
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=3.1e-11 Score=99.16 Aligned_cols=103 Identities=16% Similarity=0.276 Sum_probs=88.0
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++.+++++.++++.|.+++.+.+||+| +++++|+++..|+.+... +.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~----------~~~~~~-------------~~ 57 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP----------NRLVAD-------------AM 57 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc----------cCCHHH-------------Hc
Confidence 456789999999999999988989999998 699999999999976321 133454 44
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
..++.++.+++++.++++.|.+++..++||+| + |+++|+||..||+.
T Consensus 58 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~~l~~ 104 (105)
T cd04599 58 TREVVTISPEASLLEAKRLMEEKKIERLPVLR-E-RKLVGIITKGTIAL 104 (105)
T ss_pred cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE-C-CEEEEEEEHHHhcc
Confidence 45688999999999999999999999999999 4 99999999999973
No 84
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=2.7e-11 Score=102.60 Aligned_cols=115 Identities=15% Similarity=0.198 Sum_probs=91.2
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc-cccc-----cCCccHHHHHhcCCCCC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQIH-----LDEMNIHQALQLGQDAN 423 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~-~~~~-----l~~~~v~~~l~~~~~~~ 423 (483)
++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++..++.+....... .... ....++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ--------- 71 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH---------
Confidence 4678999999999999999999999999996 999999999999875432110 0000 00112233
Q ss_pred CCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 424 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 424 ~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
+|..++.++.+++++.++++.|.+++.+++||+| ++++++|++|+.|++++
T Consensus 72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~-~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 72 ----IMTRDPITVSPDTPVDEASKLLLENSISCLPVVD-ENGQLIGIITWKDLLKY 122 (122)
T ss_pred ----hhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEEC-CCCCEEEEEEHHHhhhC
Confidence 4556788999999999999999999999999998 46999999999999864
No 85
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.32 E-value=1.1e-10 Score=117.64 Aligned_cols=195 Identities=17% Similarity=0.176 Sum_probs=145.5
Q ss_pred EEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhccHHHHHHHHhhhhc
Q 011558 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL 246 (483)
Q Consensus 167 vi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~ 246 (483)
.+.+.+..++.+|...|.++++.++||.|.+.+..++++|..-++..+...... +....+-..++..+.
T Consensus 164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~---~~~~~~l~~s~~dl~-------- 232 (381)
T KOG1764|consen 164 FVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRL---LPLPSLLSKSLSDLG-------- 232 (381)
T ss_pred ceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcc---cccHHHhhCCHHHhC--------
Confidence 499999999999999999999999999998888999999999888777544331 112222222222210
Q ss_pred cccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcc
Q 011558 247 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPI 326 (483)
Q Consensus 247 ~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~ 326 (483)
. .....+..+..++++.+|+++|.+++++.+||++. .| +.+|.++..|+........- ..
T Consensus 233 ------i--g~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~---~g---~~v~~~s~~Dv~~l~~~~~~------~~ 292 (381)
T KOG1764|consen 233 ------I--GTWSNIASISEDTPVIEALKIMSERRISALPVVDE---NG---KKVGNYSRFDVIHLAREGTY------NN 292 (381)
T ss_pred ------c--chhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC---CC---ceecceehhhhhhhhhcCcc------Cc
Confidence 1 12346889999999999999999999999999965 34 56999999998776543211 11
Q ss_pred cccc-cccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558 327 LQQP-VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 398 (483)
Q Consensus 327 ~~~~-v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~ 398 (483)
+... +++.. .....-...++++.++.++.++++.|..++++++.|||++|.++|++|.+|++..+.
T Consensus 293 ~~~~~l~~~~------~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~ 359 (381)
T KOG1764|consen 293 LDLSCLSEAL------SHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLV 359 (381)
T ss_pred cchhHHHHHh------hhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHH
Confidence 1111 21110 000112235899999999999999999999999999999999999999999999665
No 86
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=2.8e-11 Score=99.80 Aligned_cols=105 Identities=17% Similarity=0.356 Sum_probs=89.2
Q ss_pred CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 428 (483)
Q Consensus 349 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 428 (483)
+++.++..+.++.++++.|.+.+.+.+||+|+ ++++|+++..|++... . +.++.+ +
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~----~------~~~~~~-------------~ 57 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKD----P------DETVEE-------------I 57 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccC----c------cccHHH-------------h
Confidence 35678999999999999998888889999996 9999999999987520 0 134555 4
Q ss_pred CCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 429 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 429 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
|..++.++.+++++.++++.|.+++.+++||+| ++|+++|+|+..||++
T Consensus 58 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 58 MSKDLVVAVPEMDIMDAARVMFRTGISKLPVVD-ENNNLVGIITNTDVIR 106 (107)
T ss_pred CCCCCeEECCCCCHHHHHHHHHHhCCCeEeEEC-CCCeEEEEEEHHHhhc
Confidence 455678899999999999999999999999999 4799999999999986
No 87
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.32 E-value=3.5e-11 Score=101.58 Aligned_cols=114 Identities=20% Similarity=0.331 Sum_probs=91.7
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccc-c----ccCCccHHHHHhcCCCCCC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ-I----HLDEMNIHQALQLGQDANP 424 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~-~----~l~~~~v~~~l~~~~~~~~ 424 (483)
++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..++.+......... . .....++.+
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~---------- 71 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKE---------- 71 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHH----------
Confidence 4678899999999999999889999999998899999999999987543211000 0 011234444
Q ss_pred CcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 425 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 425 ~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
+|..++.++..++++.++++.|.+++.+.+||+| + ++++|++|.+||++
T Consensus 72 ---~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 72 ---IMTKDVITVHPLDTVEEAALLMREHRIGCLPVVE-D-GRLVGIITETDLLR 120 (121)
T ss_pred ---HhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHhhc
Confidence 4445688999999999999999999999999999 4 89999999999986
No 88
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=3.7e-11 Score=99.65 Aligned_cols=108 Identities=21% Similarity=0.430 Sum_probs=91.0
Q ss_pred CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (483)
Q Consensus 259 ~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 338 (483)
++++++.+++++.+|++.|.+++...+||+++ +| +++|+++..++++.+.... .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~-----------~~-------- 56 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE---DG---RLVGIVTSWDISKAVARDK-----------KS-------- 56 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECC---CC---cEEEEEeHHHHHHHHhhCc-----------cC--------
Confidence 46788999999999999999999999999954 45 8999999999987653210 11
Q ss_pred cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
+.++|.+++.++.+++++.++++.|.+.+...+||++++|+++|++++.|+.+
T Consensus 57 ----~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 57 ----VEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred ----HHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 23347678889999999999999999999999999998899999999999865
No 89
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.32 E-value=3e-11 Score=99.41 Aligned_cols=100 Identities=15% Similarity=0.257 Sum_probs=85.5
Q ss_pred eEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccCCC
Q 011558 352 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQ 431 (483)
Q Consensus 352 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~~ 431 (483)
.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+... .++.+ +|..
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~-----------~~~~~-------------~~~~ 58 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENATY-----------GDVVD-------------YIVR 58 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhcc-----------cchhh-------------hhhc
Confidence 46889999999999999999999999997 99999999999875311 12333 3444
Q ss_pred cceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 432 RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 432 ~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
...++.+++++.++++.|.+++.+.+||+| +|+++|+||..|+++
T Consensus 59 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~--~~~~iGvit~~dl~~ 103 (104)
T cd04594 59 GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD--DGKFKGIVTLDSILD 103 (104)
T ss_pred CCcEEcCCCCHHHHHHHHHHcCcceEEEEE--CCEEEEEEEHHHhhc
Confidence 678999999999999999999999999998 489999999999975
No 90
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.31 E-value=1.3e-11 Score=128.47 Aligned_cols=107 Identities=16% Similarity=0.190 Sum_probs=92.2
Q ss_pred eeEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcc
Q 011558 351 FAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG 427 (483)
Q Consensus 351 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~ 427 (483)
.+++.+++++.+|+++|.+++++.+||+|+ +++++|+||..|++... . ..+.++.+
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~--~------~~~~~V~d------------- 165 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR--M------SLDTKVKD------------- 165 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--c------CCCCCHHH-------------
Confidence 358999999999999999999999999996 58999999999986421 0 11356777
Q ss_pred cCCC--cceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 428 FNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 428 ~m~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
+|.. +++++.+++++.+|+++|.++++++||||| ++++++|+||++||++.
T Consensus 166 IMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD-~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 166 FMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVD-KNGNLVYLVFRKDYDSH 218 (502)
T ss_pred HhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEhHHHHhc
Confidence 5553 688999999999999999999999999999 57999999999999885
No 91
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=3.7e-11 Score=100.32 Aligned_cols=109 Identities=19% Similarity=0.312 Sum_probs=90.1
Q ss_pred eEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccccc
Q 011558 261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 340 (483)
Q Consensus 261 ~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~ 340 (483)
.+++.+++++.+|++.|.+++.+.++|+++ +| +++|+++.+|+++.+..... ...
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~~--------~~~----------- 58 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDE---NG---RLLGTVTDGDIRRALLKGLS--------LDD----------- 58 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECC---CC---CEEEEEEcHHHHHHHhcCCC--------cCC-----------
Confidence 467899999999999999889999999954 45 79999999999876532110 011
Q ss_pred cccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 341 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.+.++|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|++.
T Consensus 59 -~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 59 -PVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred -CHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 233447778889999999999999999999999999998899999999999863
No 92
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.31 E-value=6.3e-11 Score=99.28 Aligned_cols=111 Identities=24% Similarity=0.428 Sum_probs=93.8
Q ss_pred cCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCc
Q 011558 347 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 426 (483)
Q Consensus 347 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~ 426 (483)
|.+.+.++.++.++.+|...|.++++..+||++ .++++|++|.+|+.+....+.... .++.+
T Consensus 5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~-~~~l~Giit~~di~~~~~~~~~~~-----~~v~~------------ 66 (117)
T COG0517 5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVD-DGKLVGIITERDILRALAAGGKRL-----LPVKE------------ 66 (117)
T ss_pred ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHhccCCcc-----ccHHH------------
Confidence 456789999999999999999999999999997 348999999999999766432211 13444
Q ss_pred ccCCCcceEEeCCCCHHHHHHHHHc-CCCCEEEEEeCCCC-eEEEEEehHHHH
Q 011558 427 GFNGQRCQMCLRSDPLHKVMERLAN-PGVRRLVIVEAGSK-RVEGIISLSDVF 477 (483)
Q Consensus 427 ~~m~~~~~~v~~~~tl~~~~~~m~~-~~~~~l~VVd~~~~-~l~GiIs~~DIl 477 (483)
+|..+++++.+++++.++++.|.+ ++++++||+| +++ +++|++|.+|++
T Consensus 67 -v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~-~~~~~lvGivt~~di~ 117 (117)
T COG0517 67 -VMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVD-DDGGKLVGIITLSDIL 117 (117)
T ss_pred -hccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEE-CCCCeEEEEEEHHHcC
Confidence 566678999999999999999999 7999999999 465 999999999974
No 93
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.31 E-value=2.9e-11 Score=98.22 Aligned_cols=94 Identities=13% Similarity=0.238 Sum_probs=83.0
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
+++++.+++++.+|++.|.+++++.+||+|+ +| +++|+++.+|+++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~-------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD---DG---KLSGIITERDLIAKS-------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEEHHHHhcCC--------------------------
Confidence 4678899999999999999999999999954 45 799999999987521
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.+.++.+++++.+|+++|.+++.+.+||+|++|+++|++|++|+++
T Consensus 50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 1567899999999999999999999999998899999999999874
No 94
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.31 E-value=5.3e-11 Score=98.18 Aligned_cols=111 Identities=23% Similarity=0.449 Sum_probs=91.6
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++..+.++.++.+.|.+.+.+.+||++++++++|+++..|+............ ..+.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~----~~~~~-------------~~ 64 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPL----VTVGD-------------VM 64 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCcc----ccHHH-------------Hh
Confidence 45678999999999999999889999999988999999999999886653222111 11333 34
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
..++.++.+++++.++++.|.+.+.+.++|+| ++++++|+++..|+++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 65 TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVD-DEGRLVGIVTRSDILR 112 (113)
T ss_pred cCCceecCCCcCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEHHHhhc
Confidence 45678899999999999999999999999999 4699999999999986
No 95
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=4.9e-11 Score=99.27 Aligned_cols=110 Identities=20% Similarity=0.387 Sum_probs=91.4
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++..+.+++++.+|++.|.+.+.+.+||+++ ++ +++|+++..++++.+..... ...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~l~~~~~~~~~--------~~~~--------- 58 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP---DE---RPIGIVTERDIVRAVAAGID--------LDTP--------- 58 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---CEEEEeeHHHHHHHHhccCC--------CccC---------
Confidence 4678899999999999999999999999954 35 89999999999887643211 1112
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
+.++|.+++..+.+++++.++++.|.+++...+||++++|+++|+++.+|+++
T Consensus 59 ---v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 59 ---VSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred ---HHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 33447788999999999999999999999999999998899999999999864
No 96
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.30 E-value=3.2e-11 Score=125.85 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=96.9
Q ss_pred cCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCC
Q 011558 347 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN 423 (483)
Q Consensus 347 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~ 423 (483)
|.++++++.+++++.+|+++|.+++++.+||+|+ +|+++|+||.+|+..... .+.++.+
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~---------~~~~V~e--------- 167 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVND---------RETKLSE--------- 167 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccc---------cCCcHHH---------
Confidence 6678899999999999999999999999999987 489999999999965321 1356776
Q ss_pred CCcccCCCc--ceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558 424 PSLGFNGQR--CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481 (483)
Q Consensus 424 ~~~~~m~~~--~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~ 481 (483)
+|... ++++.+++++.+|+++|.+++.+++|||| ++++++|+||++||++++.
T Consensus 168 ----IMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD-~~g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 168 ----VMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVN-EDGELVDLVTRTDVKRVKG 222 (505)
T ss_pred ----HhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHhh
Confidence 45434 78999999999999999999999999999 4799999999999998863
No 97
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.30 E-value=2.8e-11 Score=125.56 Aligned_cols=114 Identities=17% Similarity=0.318 Sum_probs=98.5
Q ss_pred ccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCC
Q 011558 344 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ 420 (483)
Q Consensus 344 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~ 420 (483)
.+.|.+++.++.+++++.+++++|.+++++.+||+|++ ++++|+++.+|++.... .+.++.+
T Consensus 83 ~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~---------~~~~V~d------ 147 (450)
T TIGR01302 83 ENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD---------KGKPVSE------ 147 (450)
T ss_pred cCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc---------CCCCHHH------
Confidence 34467788999999999999999999999999999987 79999999999975321 1245666
Q ss_pred CCCCCcccCC-CcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558 421 DANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 480 (483)
Q Consensus 421 ~~~~~~~~m~-~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l 480 (483)
+|. .+++++.+++++.++++.|.+++.+.+|||| ++|+++|+||+.||++.+
T Consensus 148 -------vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVD-e~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 148 -------VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVD-KNGELVGLITMKDIVKRR 200 (450)
T ss_pred -------hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEhHHhhhcc
Confidence 455 3788999999999999999999999999999 589999999999999875
No 98
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.30 E-value=9.7e-11 Score=121.40 Aligned_cols=206 Identities=12% Similarity=0.118 Sum_probs=138.4
Q ss_pred CeeeceeCCCCceeEEeeHHHHHHHHHHhccCC---CCCCHHHHhhccHHHHHHHHhhhhccccCCCCCCCCCCCeEEeC
Q 011558 189 PMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAG 265 (483)
Q Consensus 189 ~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~ 265 (483)
..+|++.+ ...-+|..++...+...+..+ .+++.+ .+.+...... . ...|..+++++.
T Consensus 43 l~~Pi~sa----~Mdtvt~~~MAiaLAr~GGiGvih~nl~~~--------~q~~~l~~VK---v----~~iMi~~pvtv~ 103 (479)
T PRK07807 43 TTIPLVVA----NMTAVAGRRMAETVARRGGLVVLPQDIPID--------VVAEVVAWVK---S----RDLVFDTPVTLS 103 (479)
T ss_pred cccceeec----CCcchhHHHHHHHHHHCCCceEeeCCCCHH--------HHHHHHhhcc---c----ccccccCCeEEC
Confidence 45788764 334567777777666554111 233222 2222211111 1 124678899999
Q ss_pred CCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccccccccc
Q 011558 266 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 345 (483)
Q Consensus 266 ~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~ 345 (483)
+++++.+|++.|.+++++.+||+|+ ++ +++|+||.+|+... . ... .+.+
T Consensus 104 ~d~tv~eA~~~m~~~~~s~l~VVD~---~g---klvGIVT~rDL~~~-----~--------~~~------------~V~d 152 (479)
T PRK07807 104 PDDTVGDALALLPKRAHGAVVVVDE---EG---RPVGVVTEADCAGV-----D--------RFT------------QVRD 152 (479)
T ss_pred CCCCHHHHHHHHHhcCCceEEEECC---CC---eEEEEEeHHHHhcC-----c--------cCC------------CHHH
Confidence 9999999999999999999999954 45 89999999997321 0 011 2445
Q ss_pred ccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCC
Q 011558 346 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS 425 (483)
Q Consensus 346 ~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~ 425 (483)
+|.+++.++.+++++.+|+++|.++++..+||+|++++++|+||++||++........ ..-....+..
T Consensus 153 iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~-~~~g~l~V~a----------- 220 (479)
T PRK07807 153 VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAV-DAAGRLRVAA----------- 220 (479)
T ss_pred hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchh-hhhhccchHh-----------
Confidence 5889999999999999999999999999999999889999999999999866533110 0000112222
Q ss_pred cccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCe
Q 011558 426 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKR 466 (483)
Q Consensus 426 ~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~ 466 (483)
...+ .....+.++.|.+.+++. .++|..+|+
T Consensus 221 -------av~~--~~~~~~~a~~Lv~aGvd~-i~~D~a~~~ 251 (479)
T PRK07807 221 -------AVGI--NGDVAAKARALLEAGVDV-LVVDTAHGH 251 (479)
T ss_pred -------hhcc--ChhHHHHHHHHHHhCCCE-EEEeccCCc
Confidence 1112 233567778888888875 567754554
No 99
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.30 E-value=5.2e-11 Score=98.03 Aligned_cols=104 Identities=13% Similarity=0.195 Sum_probs=87.8
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++.++++++++.+|++.|.+++.+.+||+++ +| +++|+++..|+++... .+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~---~g---~~~Giv~~~dl~~~~~--------------~~--------- 52 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA---DG---QPLGFVTRREAARASG--------------GC--------- 52 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEeHHHHHHhcc--------------cc---------
Confidence 4678899999999999999999999999954 45 8999999999986321 11
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
+.++|.+.+..+.+++++.++++.|.+++...+||+|++|+++|++++++++.
T Consensus 53 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 53 ---CGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred ---hhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 22336667788999999999999999999999999998899999999999864
No 100
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.30 E-value=2.8e-11 Score=125.27 Aligned_cols=114 Identities=12% Similarity=0.160 Sum_probs=97.9
Q ss_pred cccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCC
Q 011558 343 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 422 (483)
Q Consensus 343 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~ 422 (483)
+.++|.++++++.+++++.+++++|.+++++.+||+| +++++|++|.+|+.... . ..++.+
T Consensus 90 v~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~~~-------~---~~~V~d-------- 150 (475)
T TIGR01303 90 SRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLGVD-------R---FTQVRD-------- 150 (475)
T ss_pred hhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhcCC-------C---CCCHHH--------
Confidence 3455778899999999999999999999999999998 47999999999985321 0 134565
Q ss_pred CCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558 423 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481 (483)
Q Consensus 423 ~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~ 481 (483)
+|..+++++.+++++.+|+++|.+++++++|||| ++|+++|+||.+||+++..
T Consensus 151 -----IMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD-~~g~LvGIIT~~DLl~~~~ 203 (475)
T TIGR01303 151 -----IMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVD-ADGTLAGILTRTGALRATI 203 (475)
T ss_pred -----HccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHHh
Confidence 6677899999999999999999999999999999 5799999999999998754
No 101
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=6.8e-11 Score=98.33 Aligned_cols=111 Identities=20% Similarity=0.358 Sum_probs=91.2
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++..+.+++++.+|++.|.+++++++||+++ ++ +++|+++..++++++...... ....
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~------~~~~---------- 59 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD---GG---RLVGIFSERDIVRKVALRGAS------ALDT---------- 59 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------cccc----------
Confidence 4678899999999999999999999999954 34 799999999999876432110 0011
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.+.++|.+++.++.+++++.++++.|.+.+.+.+||+++ |+++|+++.+|+++
T Consensus 60 --~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 60 --PVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred --CHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 234558788999999999999999999999999999986 99999999999864
No 102
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=4.7e-11 Score=99.22 Aligned_cols=109 Identities=20% Similarity=0.422 Sum_probs=90.9
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++.++.+++++.+|++.|.+.+...+||+++ +| +++|+++..++++++.... ...+
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~---------~~~~--------- 57 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDG---DG---HLVGLLTRDDLIRALAEGG---------PDAP--------- 57 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECC---CC---cEEEEeeHHHHHHHHHhcC---------CCCc---------
Confidence 4678899999999999998888999999954 45 8999999999988764211 0112
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
+.++|..++.++.+++++.++++.|.+++...+||++++|+++|++|.+|+..
T Consensus 58 ---v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 58 ---VRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred ---HHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 33447778899999999999999999999999999998799999999999864
No 103
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.29 E-value=2.8e-11 Score=117.62 Aligned_cols=113 Identities=17% Similarity=0.292 Sum_probs=96.4
Q ss_pred cccccccCCC-eeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcC
Q 011558 341 PRIGEANGRP-FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 419 (483)
Q Consensus 341 ~~v~~~m~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~ 419 (483)
.+++++|.++ +.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++....+.. .+.++.+
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~-----~~~~v~~----- 224 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGS-----LKSEVRD----- 224 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCc-----ccCcHHH-----
Confidence 3677889888 9999999999999999999999999999989999999999999885432211 1245666
Q ss_pred CCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEe
Q 011558 420 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS 472 (483)
Q Consensus 420 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs 472 (483)
+|..++.++.+++++.+|++.|.+++.+++||+| ++|+++|+|+
T Consensus 225 --------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~l~GvI~ 268 (268)
T TIGR00393 225 --------FMTLGPKTFKLDALLLEALEFLERRKITSLVVVD-DHNKVLGVLH 268 (268)
T ss_pred --------hCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEEC-CCCeEEEEEC
Confidence 5666788999999999999999999999999999 4789999985
No 104
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.29 E-value=3.4e-11 Score=126.19 Aligned_cols=115 Identities=21% Similarity=0.368 Sum_probs=100.0
Q ss_pred cccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCC
Q 011558 343 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 422 (483)
Q Consensus 343 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~ 422 (483)
++++|.+++.++.+++++.+++++|.+++++.+||+|++++++|+++.+|+..... . ..++.+
T Consensus 89 ~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~------~---~~~V~d-------- 151 (486)
T PRK05567 89 SESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD------L---SQPVSE-------- 151 (486)
T ss_pred hhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc------C---CCcHHH--------
Confidence 45668889999999999999999999999999999999999999999999964211 0 235555
Q ss_pred CCCcccCC-CcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558 423 NPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 480 (483)
Q Consensus 423 ~~~~~~m~-~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l 480 (483)
+|. ++++++.+++++.++++.|.+++++.+||+| ++|+++|+||.+||++.+
T Consensus 152 -----im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVD-e~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 152 -----VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVD-DNGRLKGLITVKDIEKAE 204 (486)
T ss_pred -----HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEhHHhhhhh
Confidence 454 5788999999999999999999999999999 589999999999999875
No 105
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=5.1e-11 Score=100.78 Aligned_cols=120 Identities=20% Similarity=0.378 Sum_probs=93.8
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++.++.+++++.+|++.|.+.+++.+||+++ +| +++|+++..++++++......... . ..... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~~--~-~~~~~-------~ 65 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE---DG---KLVGLLTQRDLLRAALSSLSDNGE--E-SLTKE-------R 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECC---CC---CEEEEEEHHHHHHHhccccccccc--c-ccccc-------c
Confidence 4678999999999999999999999999954 35 899999999999876532211000 0 00000 1
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
...+.++|..++.++.+++++.+++++|.+.+.+.+||+|++|+++|++|..|++.
T Consensus 66 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 66 DVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred CcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 11345568788999999999999999999999999999998899999999999874
No 106
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=4.6e-11 Score=100.03 Aligned_cols=114 Identities=18% Similarity=0.285 Sum_probs=89.9
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
+++++.+++++.+|++.|.+++++.+||+++ +| +++|+++.+++++++...... ... .+ .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~-----~~~-----~~----~ 61 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK---EG---KYVGTISLTDILWKLKGLENL-----DLE-----RL----V 61 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC---CC---cEEEEEeHHHHHHHhhccCch-----hHH-----HH----h
Confidence 4678999999999999999999999999954 45 799999999999876432111 000 00 0
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
...+.++|.+++.++.+++++.+|++.|.+.+ .+||+|++|+++|++|.+|+++
T Consensus 62 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 62 DLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 11344558888999999999999999998754 5999998899999999999875
No 107
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.28 E-value=1.9e-11 Score=104.33 Aligned_cols=113 Identities=15% Similarity=0.230 Sum_probs=90.9
Q ss_pred CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (483)
Q Consensus 259 ~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 338 (483)
++++++.+++++.+|++.|.+++++.+||+++ ++ +++|+++..++++.+...... ...
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~Gii~~~dl~~~~~~~~~~-------~~~--------- 59 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE---SG---KILGMVTLGNLLSSLSSGKVQ-------PSD--------- 59 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHHhccC-------CCC---------
Confidence 35788999999999999999999999999954 34 799999999998766432111 112
Q ss_pred cccccccccCCCeeEecCCCCHHHHHHHHH---------hCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 011558 339 WVPRIGEANGRPFAMLRPTASLGSALALLV---------QADVSSIPIVDDNDSLLDIYSRSDITAL 396 (483)
Q Consensus 339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~---------~~~~~~lpVvd~~g~lvGiit~~di~~l 396 (483)
+++++|.+++.++.+++++.++.+++. +.+...+||++++|+++|++|++|++++
T Consensus 60 ---~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 60 ---PVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred ---cHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 345559999999999999999999653 3356788999988999999999999864
No 108
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.27 E-value=2.2e-11 Score=116.21 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=102.7
Q ss_pred ccccccC--CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcC
Q 011558 342 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 419 (483)
Q Consensus 342 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~ 419 (483)
.|.|+|. ....++.+++++.+-.++..+.+.+++||+|...+++|++|.+|+..... +.++.+
T Consensus 189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~----------~t~ieK----- 253 (432)
T COG4109 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKP----------STTIEK----- 253 (432)
T ss_pred eHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCC----------CccHHH-----
Confidence 5677787 57889999999999999999999999999999999999999999876221 244555
Q ss_pred CCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558 420 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 480 (483)
Q Consensus 420 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l 480 (483)
+|+++++++.+.+|+..+.++|.=.++.-+||+| ++.+++|+||++|+++.|
T Consensus 254 --------VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~-~n~~llGiitR~dvlk~l 305 (432)
T COG4109 254 --------VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVD-SNNTLLGIITRQDVLKSL 305 (432)
T ss_pred --------HhccCCeeecccchHHHHHHHHHhccceeeeEEc-CCceEEEEEEHHHHHHHH
Confidence 7888999999999999999999999999999999 689999999999999987
No 109
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=1e-10 Score=102.38 Aligned_cols=126 Identities=19% Similarity=0.304 Sum_probs=91.8
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc-ccc------ccCCccHHHHHhc----
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQI------HLDEMNIHQALQL---- 418 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~-~~~------~l~~~~v~~~l~~---- 418 (483)
+++++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+++.+..... ... .....++.++++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 4678999999999999999999999999997 999999999999886542221 000 0000111111000
Q ss_pred ---CCCCCCCc-ccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 419 ---GQDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 419 ---~~~~~~~~-~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
......+. ++|..++.++.+++++.+++..|.+.+.+++||++ + |+++|+||.+|+++
T Consensus 81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE-D-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence 00001111 15666789999999999999999999999999999 4 89999999999974
No 110
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=6.4e-11 Score=101.07 Aligned_cols=124 Identities=15% Similarity=0.229 Sum_probs=91.5
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
.++++++++++.+|++.|.+++++.+||+++ .| +++|+++..|+++......... .........+. ..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~----~~~~~~~~~~~--~~ 69 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE---KG---KLIGNISASDLKGLLLSPDDLL----LYRTITFKELS--EK 69 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECC---CC---cEEEEEEHHHhhhhhcCcchhh----cccchhhhhhh--hh
Confidence 4678999999999999999999999999954 35 8999999999988653211100 00000000000 00
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.....+.|..++.++.+++++.+|+++|.+++.+.+||+|++++++|++|.+|+++
T Consensus 70 ~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 70 FTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred cccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 00112346678899999999999999999999999999998899999999999874
No 111
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.27 E-value=2.9e-10 Score=117.71 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=94.2
Q ss_pred CCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccc
Q 011558 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 336 (483)
Q Consensus 257 ~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i 336 (483)
+.++++++.+++++.+|++.|.+++++.+||+++ + +++|++|.+|+... . ...
T Consensus 94 m~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~----g---klvGIVT~rDL~~~------~-------~~~------- 146 (475)
T TIGR01303 94 VLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE----D---RPVGLVTDSDLLGV------D-------RFT------- 146 (475)
T ss_pred cccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC----C---EEEEEEEHHHhhcC------C-------CCC-------
Confidence 4677899999999999999999999999998853 4 79999999997321 0 012
Q ss_pred cccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558 337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 399 (483)
Q Consensus 337 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~ 399 (483)
.+.++|..+++++.+++++.+|+++|.++++..+||+|++|+++|+||++||++....
T Consensus 147 -----~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 147 -----QVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY 204 (475)
T ss_pred -----CHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence 2445599999999999999999999999999999999989999999999999986553
No 112
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.27 E-value=3.7e-11 Score=124.86 Aligned_cols=116 Identities=15% Similarity=0.253 Sum_probs=99.1
Q ss_pred ccccccCCCeeEecCCCCHHHHHHHHHh-----CCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHH
Q 011558 342 RIGEANGRPFAMLRPTASLGSALALLVQ-----ADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL 416 (483)
Q Consensus 342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~-----~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l 416 (483)
+++++|++++.+++++.++.++++.|.+ .+...++|+|++++++|+++.+|++.. . .+.++++
T Consensus 132 tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a---~-------~~~~v~~-- 199 (449)
T TIGR00400 132 SAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA---K-------PEEILSS-- 199 (449)
T ss_pred hHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC---C-------CCCcHHH--
Confidence 5667799999999999999999999975 456789999999999999999998642 1 1235666
Q ss_pred hcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHh
Q 011558 417 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 481 (483)
Q Consensus 417 ~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~ 481 (483)
+|.++++++.+++++.+|++.|.+++...+|||| ++|+++|+||.+|+++.+.
T Consensus 200 -----------im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD-~~g~lvGiIt~~Dil~~l~ 252 (449)
T TIGR00400 200 -----------IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD-NEGRLVGIVTVDDIIDVIQ 252 (449)
T ss_pred -----------HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc-CCCeEEEEEEHHHHHHHHH
Confidence 5556788999999999999999999999999999 5799999999999998874
No 113
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.27 E-value=9.1e-11 Score=98.25 Aligned_cols=111 Identities=18% Similarity=0.367 Sum_probs=90.7
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++..+.+++++.+|++.|.+.+++.+||+++ +| +++|+++..|+++.+...... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~~~-------~~~---------- 58 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDR---DG---GVVGIITLPDLLRALEADEAG-------EPS---------- 58 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC---CC---CEEEEEEHHHHHHHHhccccc-------ccc----------
Confidence 4567889999999999999999999999954 45 899999999998866421100 011
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGiit~~di~~ 395 (483)
.+.++|.+++.++.+++++.+++++|.+++...+||+|++ |+++|++|.+|+++
T Consensus 59 --~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 59 --AVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred --cHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 1334477789999999999999999999999999999987 79999999999874
No 114
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=4.2e-11 Score=100.13 Aligned_cols=109 Identities=15% Similarity=0.250 Sum_probs=87.0
Q ss_pred CeEEeCCCCCHHHHHHHHHhCC-CceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~-~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 338 (483)
++.++.+++++.+|++.|.+++ .+.+||+++ +| +++|+++..|+++...... ...++.
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~---------~~~~v~------ 60 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN---EG---RYVGIISLADLRAIPTSQW---------AQTTVI------ 60 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcC---CC---cEEEEEEHHHHHHHHHhhc---------cccchh------
Confidence 4678899999999999987765 889999954 45 7999999999988653210 012232
Q ss_pred cccccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 339 WVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 339 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
++|.. ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus 61 ------~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 61 ------QVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred ------hhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 33543 3568999999999999999999999999998899999999999864
No 115
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=1.2e-10 Score=98.00 Aligned_cols=113 Identities=17% Similarity=0.236 Sum_probs=88.4
Q ss_pred CeeEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCccc
Q 011558 350 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 428 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 428 (483)
++.++.+++++.++++.|.+.+ .+.+||+|+ |+++|+++..|+........... ...+.++.+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~-~~~~~~v~~-------------~ 66 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRA-LYGKKPVSE-------------V 66 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHH-HHcCCcHHH-------------h
Confidence 4567899999999999998876 889999998 99999999999987544211000 011234454 5
Q ss_pred CCCcceEEeCCCCHHHHHHHHHcCCCC---EEEEEeCCCCeEEEEEehHHHHH
Q 011558 429 NGQRCQMCLRSDPLHKVMERLANPGVR---RLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 429 m~~~~~~v~~~~tl~~~~~~m~~~~~~---~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
|..++.++.+++++.++++.|.+++.+ ..+||+ ++|+++|+||..|+++
T Consensus 67 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~-~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 67 MDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVT-EEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEe-eCCeEEEEEEHHHHhc
Confidence 666788999999999999999999864 346888 4799999999999975
No 116
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=9.7e-11 Score=99.51 Aligned_cols=123 Identities=20% Similarity=0.326 Sum_probs=93.9
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++.++.+++++.+|+++|.+++.+.+||+++ ++| +++|+++..++++++......... ...... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~--~~~---~~~G~v~~~dl~~~~~~~~~~~~~----~~~~~~----~~~ 68 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE--GTG---KLVGIITATDILKYLGGGEKFNKI----KTGNGL----EAI 68 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeC--CCC---EEEEEEEHHHHHHHhhccchhccc----cccccc----hhh
Confidence 4678899999999999999999999999954 225 899999999999877532111000 000000 001
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
...+.++|.+++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 12344557788999999999999999999999999999998799999999999875
No 117
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=9.4e-11 Score=97.06 Aligned_cols=105 Identities=18% Similarity=0.264 Sum_probs=89.1
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++.++.+++++.+|++.|.+++.+.+||+++ +| +++|+++..+++... ...+
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-------------~~~~--------- 54 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE---KN---KVVGIVTSKDVAGKD-------------PDTT--------- 54 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECC---CC---eEEEEecHHHHhccc-------------cccc---------
Confidence 5788999999999999999999999999954 45 899999999986421 0122
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
+.++|..++.++.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus 55 ---v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 55 ---IEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred ---HHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 33447778889999999999999999999999999998999999999999874
No 118
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=7.6e-11 Score=98.35 Aligned_cols=112 Identities=23% Similarity=0.299 Sum_probs=90.9
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++.++.+++++.+|++.|.+++.+.+||+++ ++ +++|+++..++++.+....... ....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~-----~~~~---------- 60 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD---NG---NLVGFLSEQDCLKQLLESSYHC-----DGVA---------- 60 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECC---CC---eEEEEeehHHHHHHhhhhhhcc-----CCCc----------
Confidence 4678899999999999999889999999954 44 8999999999998764321000 0011
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.+.++|..++.++.+++++.++++.|.+++.+.+||+|+ |+++|++|.+|+++
T Consensus 61 --~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 61 --TVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred --cHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 244557778889999999999999999999999999997 99999999999875
No 119
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.25 E-value=1.2e-10 Score=97.04 Aligned_cols=111 Identities=19% Similarity=0.351 Sum_probs=91.7
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++.++.+++++.++++.|.+.+.+.+||+++ +| +++|+++..++++.+...... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~i~~~~~~~~~~-------~~~---------- 59 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE---DG---RLVGIFTDGDLRRALEKGLDI-------LTL---------- 59 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcC---CC---CEEEEechHHHHHHHhccCcc-------ccC----------
Confidence 4667899999999999998888899999954 35 799999999999876532211 011
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.+.++|.+++.++.+++++.++++.|.+.+...+||++++|+++|+++..||++
T Consensus 60 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 60 --PVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred --CHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 234457788889999999999999999999999999998899999999999874
No 120
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.25 E-value=1.1e-10 Score=96.35 Aligned_cols=100 Identities=22% Similarity=0.344 Sum_probs=86.3
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCc
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 426 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~ 426 (483)
....+.+++++.++.+.|.+.+...+||+|+ +|+++|+++..|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~--------------------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN--------------------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------------
Confidence 4567899999999999999988889999998 6999999999999874432
Q ss_pred ccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 427 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 427 ~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
+|..++.++.+++++.++++.|.+++.+.+||++ +|+++|+||+.||+++
T Consensus 56 -~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 56 -YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLKA 105 (105)
T ss_pred -hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhcC
Confidence 1223567899999999999999999999999997 5899999999999864
No 121
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1.1e-10 Score=97.12 Aligned_cols=109 Identities=15% Similarity=0.267 Sum_probs=89.5
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++..+++++++.+|++.|.+++.+.+||+++ .| +++|+++..|++.+..... ....+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~--------~~~~~--------- 58 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN---EE---KLKGVVTFTDILDLDLFES--------FLEKK--------- 58 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcC---CC---CEEEEEehHHhHHHHhhcc--------cccCc---------
Confidence 4678899999999999999999999999954 45 7999999999987542110 01122
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
+.++|.+++.++.+++++.+|++.|.+++...+||+++ |+++|++|..|++.
T Consensus 59 ---v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 59 ---VFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred ---HHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 33447788899999999999999999999999999997 99999999999863
No 122
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.24 E-value=1.4e-10 Score=96.64 Aligned_cols=110 Identities=14% Similarity=0.246 Sum_probs=89.8
Q ss_pred eEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccccc
Q 011558 261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 340 (483)
Q Consensus 261 ~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~ 340 (483)
...+.+++++.+|++.|.+.+.+.+||+++ ++ +++|+++..|+++.+.... .+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~dl~~~~~~~~-------~~~~~----------- 58 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDD---KK---RLVGIITRYDVLSYALESE-------ELKDA----------- 58 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcC---CC---CEEEEEEHHHHHHhhhhhh-------hhcCC-----------
Confidence 567899999999999999999999999954 34 7999999999987543210 00111
Q ss_pred cccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 341 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.+.++|..++.++..++++.++++.|.+.+...+||+|++|+++|+++..|+++
T Consensus 59 -~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 59 -KVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred -cHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 233447778899999999999999999999999999998899999999999864
No 123
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.24 E-value=1.7e-10 Score=95.35 Aligned_cols=106 Identities=20% Similarity=0.336 Sum_probs=89.3
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++..+.+++++.+|++.|.++++..+||+++ ++ +++|+++..|+++.... ..+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~------------~~~--------- 55 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK---DN---KLLGIVSLESLEQAYKE------------AKS--------- 55 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcC---CC---cEEEEEEHHHHHHHhhc------------CCc---------
Confidence 4677899999999999999999999999954 35 79999999999875421 012
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
+.++|...+.++.+++++.++++.|.+.+...+||++++|+++|+++.+|+++
T Consensus 56 ---v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 56 ---LEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred ---HhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 23347778889999999999999999999999999998899999999999864
No 124
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.24 E-value=1.5e-10 Score=97.50 Aligned_cols=120 Identities=19% Similarity=0.288 Sum_probs=93.4
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++.++.+++++.+|++.|.+.+...+||+++ | +++|+++..+++++......... ..+...+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~i~~~~l~~~~~~~~~~~~---------~~~~~~~~~ 65 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR----G---KLVGIVTDRDLKLASPSKATTLD---------IWELYYLLS 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC----C---eEEEEEeHHHHHHhhhccccccc---------chhhhhhhc
Confidence 4678899999999999999999999999953 4 89999999999887642211100 000000011
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
...+.++|.+++.++.+++++.+++..|.+.+.+.+||++++|+++|++|..|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 12355668888999999999999999999999999999998899999999999875
No 125
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.23 E-value=1.6e-10 Score=95.91 Aligned_cols=109 Identities=16% Similarity=0.240 Sum_probs=88.6
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
+++++.+++++.+|++.|.+++.+.+||+++ ..| +++|+++..++++....... ..++.
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~--~~~---~~~G~v~~~~l~~~~~~~~~---------~~~~~------- 60 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDG--DLD---NIIGVVHVKDLLRALAEGEE---------DLDLR------- 60 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECC--CCc---eEEEEEEHHHHHHHHHcCCC---------cCCHH-------
Confidence 4678999999999999999999999999954 225 89999999999987642110 01122
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
++| .++.++.+++++.++++.|.+++.+.+||+|++|+++|++|++|++.
T Consensus 61 -----~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 61 -----DLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred -----HHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 224 35788999999999999999999999999998899999999999863
No 126
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.23 E-value=1.6e-10 Score=96.67 Aligned_cols=110 Identities=20% Similarity=0.352 Sum_probs=86.6
Q ss_pred CeEEeCCCCCHHHHHHHHHhCC-CceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~-~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 338 (483)
+..++++++++.+|++.|.+++ ...++|.+ .| +++|+++..|+++++..... ....+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~-------~~~~~-------- 59 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE----KG---RLLGIFTERDIVRLTAIGKD-------LSDLP-------- 59 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC----CC---cEEEEEeHHHHHHHHhcCCC-------ccccC--------
Confidence 3567899999999999998888 56677763 24 79999999999886532110 00112
Q ss_pred cccccccccCCCeeEecCC--CCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 339 WVPRIGEANGRPFAMLRPT--ASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 339 ~~~~v~~~m~~~~~~v~~~--~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
+.++|.+++.++.++ +++.+++++|.+++...+||+|++|+++|++|++|+++
T Consensus 60 ----i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 60 ----IGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ----HHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 334477788888877 68999999999999999999998899999999999875
No 127
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.23 E-value=8.5e-11 Score=101.61 Aligned_cols=128 Identities=19% Similarity=0.347 Sum_probs=93.8
Q ss_pred CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccc--cccccc--
Q 011558 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ--QPVSSI-- 334 (483)
Q Consensus 259 ~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~--~~v~~l-- 334 (483)
+++.++.+++++.+|++.|.+++++++||+++ ++ +++|+++..++++.+...+..... .+.. ......
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~---~~---~~~Gvi~~~dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 73 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDD---DG---RLVGIVSEGDLLRRAELGTERRRA--RWLDLLAGAEELAA 73 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECC---CC---CEEEEeeHHHHHHHhcccCcchhh--hHHHHhcchHHHHH
Confidence 46788999999999999999999999999954 45 799999999998765322110000 0000 000000
Q ss_pred c-ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 335 Q-LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 335 ~-i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
. .......+.++|.+++..+.+++++.++++.|.+.+.+.+||+| +|+++|++|+.|+++
T Consensus 74 ~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 74 AFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred HHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 0 00011235566888899999999999999999999999999999 899999999999864
No 128
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.23 E-value=1.5e-10 Score=96.15 Aligned_cols=109 Identities=20% Similarity=0.371 Sum_probs=89.8
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++.++.+++++.+|++.|.+++.+.+||+++ + +++|+++..++++.+.... . ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~-~------~~~~---------- 57 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD----G---RLVGIVTDRDLRNRVVAEG-L------DPDT---------- 57 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHhccC-C------CccC----------
Confidence 4678899999999999999999999999953 4 8999999999987653210 0 0011
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.+.++|..++..+.+++++.++++.|.+.+.+.+||+++ |+++|+++.+|+++
T Consensus 58 --~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 58 --PVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred --CHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 234447788999999999999999999999999999986 99999999999875
No 129
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.23 E-value=5.1e-11 Score=94.24 Aligned_cols=75 Identities=27% Similarity=0.387 Sum_probs=61.5
Q ss_pred EEEEEe-cCCCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEE-cCCceEEEEEEEcCeeeeCCCCCeeeCCCCCeeeE
Q 011558 22 PVRFIW-PNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV 99 (483)
Q Consensus 22 ~~~f~~-~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~w~~d~~~~~~~~~~g~~nn~ 99 (483)
.++|+. ...|++|.|.|+|++|.. .+|.+.+ +|+|++++. |++|.|+|+|++||.|..||..+...-+.+..-|.
T Consensus 7 ~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~~--~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~ 83 (85)
T cd02858 7 TVTFRLFAPKANEVQVRGSWGGAGS-HPMTKDE--AGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSG 83 (85)
T ss_pred cEEEEEECCCCCEEEEEeecCCCcc-EeCeECC--CeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeeccccccee
Confidence 367764 556999999999998875 7998876 899999984 88899999999999999999999777555554443
No 130
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.23 E-value=1.1e-10 Score=116.51 Aligned_cols=114 Identities=17% Similarity=0.204 Sum_probs=96.1
Q ss_pred CCCCC--eEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccc
Q 011558 256 PCPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 333 (483)
Q Consensus 256 ~~~~~--~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~ 333 (483)
+|.++ ++++++++++.+|++.|.+++...+||+|+ +| +++|+++..|+.+.+.... ....
T Consensus 202 im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~---~g---~~iG~vt~~dl~~~~~~~~--------~~~~---- 263 (321)
T PRK11543 202 LMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA---QQ---QVQGVFTDGDLRRWLVGGG--------ALTT---- 263 (321)
T ss_pred HhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEecHHHHHHHHhCCC--------CcCC----
Confidence 45666 999999999999999999888899999964 45 8999999999987653210 0111
Q ss_pred ccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 334 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.+.++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|++|++|+++
T Consensus 264 --------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~ 317 (321)
T PRK11543 264 --------PVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQ 317 (321)
T ss_pred --------cHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHh
Confidence 244568889999999999999999999999999999998899999999999986
No 131
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.22 E-value=1.7e-10 Score=99.97 Aligned_cols=129 Identities=16% Similarity=0.228 Sum_probs=93.7
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCC-CCCCccc---cccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS-SSSLPIL---QQPVSSIQ 335 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~-~~~~~~~---~~~v~~l~ 335 (483)
++.++.+++++.+|++.|.+++.+.+||+|+ +| +++|+++..|+++++....... ......+ ...-....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD---NG---KPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRY 75 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECC---CC---CEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccc
Confidence 3577899999999999999999999999954 45 8999999999998764211100 0000000 00000000
Q ss_pred ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.......+.++|.+++..+.+++++.++++.|.+++.+.+||+++ |+++|+++.+|+++
T Consensus 76 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 76 VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 011122466778888999999999999999999999999999986 99999999999875
No 132
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.22 E-value=9.5e-11 Score=122.36 Aligned_cols=113 Identities=19% Similarity=0.184 Sum_probs=96.8
Q ss_pred cccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558 345 EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 421 (483)
Q Consensus 345 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~ 421 (483)
+.|..+++++.+++++.+++++|.+++++.+||+|++ ++++|+++.+|+..... .+.++.+
T Consensus 100 ~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~---------~~~~V~d------- 163 (495)
T PTZ00314 100 NGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKD---------KSTPVSE------- 163 (495)
T ss_pred cccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhccc---------CCCCHHH-------
Confidence 3466788999999999999999999999999999973 79999999999873211 1345666
Q ss_pred CCCCcccCCC--cceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558 422 ANPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 480 (483)
Q Consensus 422 ~~~~~~~m~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l 480 (483)
+|.+ +++++.+++++.+++++|.+++++.+|||| ++++++|+||++||++..
T Consensus 164 ------iMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd-~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 164 ------VMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVN-DNGELVALVSRSDLKKNR 217 (495)
T ss_pred ------hhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEehHhhhcc
Confidence 5554 688999999999999999999999999999 579999999999999764
No 133
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=1.5e-10 Score=99.65 Aligned_cols=125 Identities=18% Similarity=0.357 Sum_probs=93.1
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCC---CCccc--ccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS---SLPIL--QQPVSSI 334 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~---~~~~~--~~~v~~l 334 (483)
+++++.+++++.+|++.|.+++++++||+++ ++ +++|+++..++++++......... ....+ +.....+
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~---~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN---EG---RVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKL 75 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECC---CC---CEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHH
Confidence 4678999999999999999999999999954 35 799999999999877532111000 00000 0000000
Q ss_pred cccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 335 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
....+.++|.+++..+.+++++.+++++|.+.+.+.+||+|+ |+++|+++..|+++
T Consensus 76 ----~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 76 ----LGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred ----cCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 001355668888899999999999999999999999999997 99999999999874
No 134
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.22 E-value=1.5e-10 Score=121.24 Aligned_cols=118 Identities=14% Similarity=0.237 Sum_probs=96.7
Q ss_pred ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558 342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 421 (483)
Q Consensus 342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~ 421 (483)
+++++|.+++.++.+++++.++++.|.+++++.+||+|++++++|+|+..|+++.+...... .+.++.+
T Consensus 336 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~----~~~~v~~------- 404 (454)
T TIGR01137 336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKAN----PDDAVSK------- 404 (454)
T ss_pred CHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCCC----cCCCHHH-------
Confidence 56788999999999999999999999999999999999889999999999998855432111 1235565
Q ss_pred CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558 422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 480 (483)
Q Consensus 422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l 480 (483)
+|..++.++.+++++.+++++|.+++ .+||+ ++++++|+||++||+++|
T Consensus 405 ------im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~-~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 405 ------VMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVT-EEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred ------hcCCCCeEECCcCcHHHHHHHHHHCC---eeEEE-ECCEEEEEEEHHHHHHhh
Confidence 55567889999999999999998764 34555 269999999999999986
No 135
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=2.6e-10 Score=93.94 Aligned_cols=104 Identities=19% Similarity=0.366 Sum_probs=87.3
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 429 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m 429 (483)
++.++..+.++.+++..|.+.+.+.+||++++++++|+++..++..... +.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~----------~~~~~~-------------~~ 58 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE----------EEQLAL-------------LM 58 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc----------cchHHH-------------Hh
Confidence 3567888999999999999888999999998899999999999875211 123333 34
Q ss_pred CCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 430 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 430 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
..++.++..++++.+++++|.+++.+.+||+| + |+++|+||..|+++
T Consensus 59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~G~it~~d~~~ 105 (106)
T cd04638 59 TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-D-GKLVGIVTVADIVR 105 (106)
T ss_pred cCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence 44678899999999999999999999999999 3 79999999999975
No 136
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.21 E-value=3.1e-10 Score=94.02 Aligned_cols=108 Identities=22% Similarity=0.420 Sum_probs=89.8
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
+++.+.+++++.+|++.|.+++++.+||+++ + +++|+++..++++...... . ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~~l~~~~~~~~-~--------~~---------- 55 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD----G---KLVGIVTLSDIAHAIARGL-E--------LA---------- 55 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhccc-c--------cc----------
Confidence 5678999999999999999999999999942 4 7999999999988643210 0 01
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.+.++|..++.++.+++++.++++.|.+.+...+||++++|+++|+++..|+++
T Consensus 56 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 56 --KVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred --CHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 233447778899999999999999999999999999998899999999999864
No 137
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.21 E-value=3.1e-10 Score=94.10 Aligned_cols=109 Identities=24% Similarity=0.421 Sum_probs=90.4
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++..+.+++++.+|++.|.+++.+.+||+++ + +++|+++.+|++++...... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~~l~~~~~~~~~--------~~~---------- 56 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD----G---RPLGIVTERDILRLLASGPD--------LQT---------- 56 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEeHHHHHHHHhcCCC--------CCc----------
Confidence 4678899999999999999888999999953 4 89999999999887632110 112
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.+.++|.+++..+.+++++.++++.|.+.+...+||+|++|+++|+++.+|+++
T Consensus 57 --~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 57 --PVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred --CHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 234447778899999999999999999999999999998899999999999864
No 138
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.21 E-value=2.8e-10 Score=94.35 Aligned_cols=108 Identities=20% Similarity=0.421 Sum_probs=89.9
Q ss_pred CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (483)
Q Consensus 259 ~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 338 (483)
++++++++++++.+|++.|.+++..++||+++ | +++|+++..|+++.+.... ...++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~dl~~~~~~~~---------~~~~~------- 58 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG----G---RVVGIISRRDVEKALRHGL---------GHAPV------- 58 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC----C---EEEEEEEHHHHHHHHhccc---------ccCcH-------
Confidence 36788999999999999999889999999953 4 7999999999987652110 11223
Q ss_pred cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.++|.+++.++.+++++.+++++|.+.+.+.+||++ +|+++|++|..|+++
T Consensus 59 -----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 59 -----KDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred -----HHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 344777889999999999999999999999999999 899999999999864
No 139
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.21 E-value=2.1e-10 Score=95.52 Aligned_cols=111 Identities=25% Similarity=0.366 Sum_probs=91.4
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++.++.+++++.+|++.|.+++++.+||+++ ++ +++|+++..++++++..... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~--------~~----------- 56 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD---DG---RLVGIVSLDDIREILFDPSL--------YD----------- 56 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECC---CC---CEEEEEEHHHHHHHHhcccc--------cc-----------
Confidence 4678999999999999999999999999954 34 79999999999876532100 00
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~di~~ 395 (483)
...+.++|.+++.++.+++++.++++.|.+.+...+||+|+ .++++|+++..|++.
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 01344558888999999999999999999999999999997 799999999999864
No 140
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=1.8e-10 Score=97.32 Aligned_cols=120 Identities=22% Similarity=0.396 Sum_probs=92.2
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
+++++.+++++.+|++.|.+++.+.+||+++ +| +++|+++..++++.......... ..... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~---~~~~~-------~~~ 65 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK---AG---ELIGIITRRDIIRAGSVRTSVED---QQRTQ-------TKA 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEcHHHHhhccccccccc---hhhhh-------hhc
Confidence 4678999999999999999999999999954 45 89999999999875321100000 00000 001
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
...+.++|.+++..+..++++.++++.|.+.+.+.+||+|++|+++|+++..|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 66 SPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred cCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 12345567788899999999999999999999999999998899999999999874
No 141
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.20 E-value=1.7e-10 Score=115.36 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=94.0
Q ss_pred CCCC--CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccc
Q 011558 256 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 333 (483)
Q Consensus 256 ~~~~--~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~ 333 (483)
+|.+ +++++.+++++.+|++.|.+++.+.+||+++ +| +++|++|..|+++.+.... .+..
T Consensus 207 im~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~---~g---~lvGivt~~Dl~~~~~~~~-------~~~~----- 268 (326)
T PRK10892 207 IMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD---NM---KIEGIFTDGDLRRVFDMGI-------DLRQ----- 268 (326)
T ss_pred HhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC---CC---cEEEEEecHHHHHHHhcCC-------Cccc-----
Confidence 4555 8999999999999999999988888888854 45 8999999999987542110 0001
Q ss_pred ccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 334 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
..+.++|.+++.++.+++++.+|+++|.+++++.+||++ +|+++|++|++|+++
T Consensus 269 -------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~ 322 (326)
T PRK10892 269 -------ASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLR 322 (326)
T ss_pred -------CCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHh
Confidence 135566999999999999999999999999999999997 689999999999986
No 142
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.20 E-value=3e-10 Score=94.60 Aligned_cols=111 Identities=15% Similarity=0.232 Sum_probs=89.8
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++..+.+++++.+|++.|.+++.+.+||+++ + +++|+++..++++.+...... . ...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~dl~~~~~~~~~~-----~-~~~~--------- 59 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG----N---KLVGIFTSKDIALRVVAQGLD-----P-ESTL--------- 59 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHHhcCCC-----c-CcCC---------
Confidence 4677899999999999999889999999942 4 899999999998654321100 0 0122
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
+.++|.+++.++.+++++.++++.|.+++...+||++++|+++|+++.+|++.
T Consensus 60 ---v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 60 ---VERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred ---HHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 33447778889999999999999999999999999998899999999999864
No 143
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=2.4e-10 Score=97.69 Aligned_cols=124 Identities=15% Similarity=0.269 Sum_probs=91.5
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++..+.+++++.+|++.|.+.+.+.+||+++ ++ +++|++|..|+++++........ ........ -...
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~dl~~~~~~~~~~~~-----~~~~~~~~-~~~~ 69 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDD---NG---KLTGIVTRHDIVDFVVRDRDKAR-----TGDRSGEK-ERML 69 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECC---CC---cEEEEEEHHHHHHHHhhhhhhcc-----hhhhhhhh-hhhc
Confidence 4678899999999999999999999999954 35 89999999999876532110000 00000000 0001
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEc--CCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGiit~~di~~ 395 (483)
...+.++|.++++++.+++++.++++.|.+.+...+||++ ++|+++|+||.+|+++
T Consensus 70 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 70 DLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred cCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 1134566888899999999999999999999999999984 4689999999999864
No 144
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.20 E-value=2e-10 Score=119.83 Aligned_cols=110 Identities=17% Similarity=0.203 Sum_probs=91.3
Q ss_pred EEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccccc
Q 011558 262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP 341 (483)
Q Consensus 262 v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~ 341 (483)
+++.+++++.+|++.|.+++++.+||+++..+++ +++|+||..||.... ...+.+
T Consensus 108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~~-----------~~~~~~----------- 162 (502)
T PRK07107 108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRISR-----------MSLDTK----------- 162 (502)
T ss_pred CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhccc-----------cCCCCC-----------
Confidence 5899999999999999999999999996422245 899999999985310 011233
Q ss_pred ccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011558 342 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 397 (483)
Q Consensus 342 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~ 397 (483)
+.++|++ +++++.+++++.+|+++|.++++..+||+|++++++|+||++|+++..
T Consensus 163 -V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 163 -VKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred -HHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 4455886 788999999999999999999999999999889999999999998843
No 145
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=2.5e-10 Score=96.35 Aligned_cols=119 Identities=19% Similarity=0.439 Sum_probs=92.0
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
+++++.+++++.+|++.|.+++.+.+||+++ | +++|+++..++++.+......... .........
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~~~~~~--~~~~~~~~~------ 66 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG----G---KLVGIVTEKDIADALRSFRPLVRD--RHQERRIRN------ 66 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC----C---EEEEEEchHHHHHhhhhhhhcccc--hhhhhhhhc------
Confidence 5678999999999999999999999999953 5 899999999998876432111000 000011111
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
..+.++|..++.++.+++++.+++++|.+.+.+.+||+|+ |+++|+++.+|+++
T Consensus 67 -~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 67 -LPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred -cCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 1344557788999999999999999999999999999997 99999999999874
No 146
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.18 E-value=4.6e-10 Score=94.00 Aligned_cols=110 Identities=26% Similarity=0.493 Sum_probs=93.8
Q ss_pred CCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccc
Q 011558 258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG 337 (483)
Q Consensus 258 ~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~ 337 (483)
.+..+++.++.++.+|+..|.++++..+||++. + +++|++|.+|+++.+....... .
T Consensus 6 ~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~----~---~l~Giit~~di~~~~~~~~~~~--------~-------- 62 (117)
T COG0517 6 TKDVITVKPDTSVRDALLLMSENGVSAVPVVDD----G---KLVGIITERDILRALAAGGKRL--------L-------- 62 (117)
T ss_pred cCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhccCCcc--------c--------
Confidence 467899999999999999999999999999954 1 6999999999999886432210 0
Q ss_pred ccccccccccCCCeeEecCCCCHHHHHHHHHh-CCCCEEEEEcCCC-cEEEEEeHHHHH
Q 011558 338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQ-ADVSSIPIVDDND-SLLDIYSRSDIT 394 (483)
Q Consensus 338 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~-~~~~~lpVvd~~g-~lvGiit~~di~ 394 (483)
.+.++|..++.++.++.++.++.+.|.+ ++++.+||+++++ +++|++|+.|++
T Consensus 63 ----~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 63 ----PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred ----cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 2445588889999999999999999999 7999999999886 999999999973
No 147
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.18 E-value=4.3e-10 Score=93.62 Aligned_cols=111 Identities=20% Similarity=0.349 Sum_probs=89.2
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++.++.+++++.+|++.|.+++.+.+||+++ | +++|+++..+++..+... . .. ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~i~~~~l~~~~~~~--~----~~-~~~---------- 57 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN----D---RLVGIVTDRDIVVRAVAE--G----RD-PDT---------- 57 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEhHHHHHHHhhc--c----CC-ccc----------
Confidence 4678999999999999999999999999943 5 899999999987332110 0 00 001
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
..+.++|...+.++.+++++.++++.|.+.+...+||++++|+++|+++..|+++
T Consensus 58 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 58 -TTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred -CCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 1234457778889999999999999999999999999998899999999999865
No 148
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.18 E-value=4.9e-10 Score=92.87 Aligned_cols=109 Identities=23% Similarity=0.370 Sum_probs=90.2
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
+++.+.+++++.+|++.|.+.+.+.+||+++ + +++|+++..|+++........ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~~--------~----------- 55 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD----G---RLVGIVTLADIRRVPAEGREA--------T----------- 55 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC----C---eEEEEEEHHHHHHHHhcCccc--------c-----------
Confidence 5678999999999999999889999999943 4 799999999998755321000 0
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
..+.++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|+++
T Consensus 56 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 56 -VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred -cCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 1233447788999999999999999999999999999998899999999999864
No 149
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=5.4e-10 Score=92.92 Aligned_cols=110 Identities=17% Similarity=0.364 Sum_probs=88.0
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
.+.++.+++++.+|++.|.+++.+.++|.+ +| +++|+++..|+++++...... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~~------~~~~---------- 58 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME----RG---ELVGLLTFREVLQAMAQHGAG------VLDT---------- 58 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee----CC---EEEEEEEHHHHHHHHHhcCCc------hhcC----------
Confidence 367889999999999999888887777663 25 899999999999876421000 0011
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.+.++|..++.++.+++++.+|+++|.+++...+||++ +|+++|++|.+|+++
T Consensus 59 --~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 59 --TVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred --CHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 24455777888999999999999999999999999998 599999999999875
No 150
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.18 E-value=9.4e-10 Score=107.61 Aligned_cols=164 Identities=15% Similarity=0.217 Sum_probs=120.3
Q ss_pred hccccccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhh
Q 011558 152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET 231 (483)
Q Consensus 152 l~~~~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~~l~~~~l~~ 231 (483)
|...++.|+|-.-.+++.++.+.|+.++++.+.+++...+||++.+.++++|+++..|++..+.. .....
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~---~~~~~------- 133 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS---DAEAF------- 133 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc---cCCcC-------
Confidence 45789999997767899999999999999999999999999999766789999999999854421 00010
Q ss_pred ccHHHHHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHH
Q 011558 232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (483)
Q Consensus 232 ~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~ 311 (483)
.+.. ++. +.+.+++++++.++++.|.+++.+.+||+|+ .| .++|+||..||+.
T Consensus 134 -~l~~-------------------l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe---~G---~viGiVTleDIle 186 (292)
T PRK15094 134 -SMDK-------------------VLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE---FG---GVSGLVTIEDILE 186 (292)
T ss_pred -CHHH-------------------HcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC---CC---CEEEEeEHHHHHH
Confidence 1111 122 3458999999999999999999999999964 45 6999999999999
Q ss_pred HHHhhccCCCCCCcccccccccccccccccccccccCCCeeEecCCCCHHHHHHHH
Q 011558 312 CICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 367 (483)
Q Consensus 312 ~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m 367 (483)
.+......... ..-...+..+. ..-..+...+++.++.+.+
T Consensus 187 ~ivGei~de~d--~~~~~~i~~~~-------------~~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 187 LIVGEIEDEYD--EEDDIDFRQLS-------------RHTWTVRALASIEDFNEAF 227 (292)
T ss_pred HHhCCCccccc--cccccccEEeC-------------CCeEEEEeccCHHHHHHHh
Confidence 98754322110 00001122221 2345688888888888876
No 151
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.17 E-value=4.6e-10 Score=93.91 Aligned_cols=109 Identities=18% Similarity=0.274 Sum_probs=86.7
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
+++++.+++++.+|++.|.+++...+||+|+...+| +++|+++..|++.... . ..+
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~~----~--------~~~--------- 58 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLTD----S--------ETP--------- 58 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhhc----c--------CCC---------
Confidence 457888999999999999988999999995321235 8999999999864210 0 112
Q ss_pred ccccccccCCCeeEecC--CCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRP--TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~--~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
+.++|......+.. ++++.++++.|.+++...+||+|++|+++|++|++|+++
T Consensus 59 ---v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 59 ---LSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred ---HHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 33447766677766 999999999999999999999998899999999999864
No 152
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.17 E-value=8.8e-10 Score=112.98 Aligned_cols=162 Identities=16% Similarity=0.185 Sum_probs=121.5
Q ss_pred hccccccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhh
Q 011558 152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET 231 (483)
Q Consensus 152 l~~~~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~~l~~~~l~~ 231 (483)
|++.++.|+|-.-.++++++.+.|+.++++.+.+++.+..||++.+.++++|+++..|++..+. . ...
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~---~--~~~------- 255 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN---K--KNF------- 255 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc---c--CCC-------
Confidence 3578899999887889999999999999999999999999999987778999999999974321 1 000
Q ss_pred ccHHHHHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHH
Q 011558 232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (483)
Q Consensus 232 ~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~ 311 (483)
.+.. . .+++..+++++++.++++.|.+++.|.++|+|+ .| ...|+||.+||++
T Consensus 256 -~l~~-------------------~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE---~G---~~~GiVT~eDile 308 (408)
T TIGR03520 256 -DWQS-------------------L-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDE---YG---GTSGLVTLEDIIE 308 (408)
T ss_pred -CHHH-------------------H-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcC---CC---CEEEEEEHHHHHH
Confidence 1111 1 235689999999999999999999999999964 45 6999999999999
Q ss_pred HHHhhccCCCCCCcccccccccccccccccccccccCCCeeEecCCCCHHHHHHHHH
Q 011558 312 CICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLV 368 (483)
Q Consensus 312 ~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~ 368 (483)
.+........ ..-...+..+ ......++...++.++.+.|.
T Consensus 309 eivgei~de~---d~~~~~i~~~-------------~~~~~~v~G~~~l~~l~~~l~ 349 (408)
T TIGR03520 309 EIVGDISDEF---DDEDLIYSKI-------------DDNNYVFEGKTSLKDFYKILK 349 (408)
T ss_pred HHhCCCCCcC---CcCccceEEe-------------CCCeEEEEeccCHHHHHHHhC
Confidence 9864322110 0001112222 123456788899999988873
No 153
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.17 E-value=4.5e-10 Score=94.99 Aligned_cols=120 Identities=23% Similarity=0.321 Sum_probs=94.2
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
+++++.+++++.+|++.|.+++++.+||+++ | +++|+++..++++.+........ ....+. ..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~~~--~~~ 65 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED----N---ELVGVISDRDYLKAISPFLGTAG-------ETEKDL--ATL 65 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC----C---eEEEEEEHHHHHHHHHHHhcccc-------chHHHH--HHH
Confidence 4678999999999999999999999999952 5 89999999999887654321100 000000 111
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
...+.++|..++..+.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 66 NRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 22355668888999999999999999999999999999998899999999999875
No 154
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.16 E-value=7.5e-10 Score=92.05 Aligned_cols=110 Identities=21% Similarity=0.387 Sum_probs=89.0
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++..+.+++++.+|++.|.+.+.+.+||+++ + +++|+++..|+++.+...... ....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~~------~~~~---------- 58 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN----E---KPVGIITERDLVKKVVSRNLK------PREV---------- 58 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC----C---EEEEEEEHHHHHHHHhhccCC------cccC----------
Confidence 4677899999999999999989999999953 3 799999999999866422100 0011
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.+.++|.+++.++.+++++.++++.|.+.+...+||+|++ +++|+++++|+++
T Consensus 59 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 59 --PVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred --CHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 2344577788899999999999999999999999999865 9999999999864
No 155
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.16 E-value=1.6e-10 Score=116.92 Aligned_cols=118 Identities=18% Similarity=0.308 Sum_probs=101.7
Q ss_pred CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558 256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 335 (483)
Q Consensus 256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~ 335 (483)
.+..+.++++|.+++.+|...|.++|++++.+++. ++ ...||+|.+|+.+.+....+. ...
T Consensus 154 ~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~---~~---~~~GIvT~~dl~~~v~~~g~~-------~~~------ 214 (610)
T COG2905 154 VKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD---SG---PLLGIVTRKDLRSRVIADGRS-------KTQ------ 214 (610)
T ss_pred HhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC---CC---CccceeehHHHHHHHHhcCCC-------ccc------
Confidence 46788999999999999999999999998888854 44 789999999999988653322 123
Q ss_pred ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 399 (483)
Q Consensus 336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~ 399 (483)
+|+++|+.++++++..+.+.+|.-+|.++++.++||++ +|+++|++|..||+++...
T Consensus 215 ------~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 215 ------KVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQ 271 (610)
T ss_pred ------chhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCC
Confidence 34555999999999999999999999999999999997 7999999999999998763
No 156
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.16 E-value=3.7e-10 Score=96.35 Aligned_cols=115 Identities=15% Similarity=0.133 Sum_probs=85.5
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHh--hccCCCCCCccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR--HFKHSSSSLPILQQPVSSIQLG 337 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~--~~~~~~~~~~~~~~~v~~l~i~ 337 (483)
+++++.+++++.+|++.|.+++.+.+||+++ .| +++|+++..|+++.... ..... ......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~~-------- 64 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS---DD---NFIGVITAVDLLGEEPIKRIQEGG---ISRSEL-------- 64 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEHHHHhhChhhHHHHHcC---CCchhe--------
Confidence 3678899999999999999899999999954 45 89999999998863210 00000 000112
Q ss_pred ccccccccccCCCeeEe------cCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHH
Q 011558 338 TWVPRIGEANGRPFAML------RPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITA 395 (483)
Q Consensus 338 ~~~~~v~~~m~~~~~~v------~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~di~~ 395 (483)
.+.++|.++...+ .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++
T Consensus 65 ----~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 65 ----TVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred ----EHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 2344576654333 368899999999999999999999986 79999999999874
No 157
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.14 E-value=5.4e-10 Score=92.43 Aligned_cols=106 Identities=20% Similarity=0.338 Sum_probs=85.8
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++..+.+++++.++++.|.+++...+||+++ +| +++|+++.+++++.. . ...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-----~-------~~~~--------- 55 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDD---DG---KLVGIVTNRDLRFET-----D-------LDKP--------- 55 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---EEEEEEEhhHeeecc-----c-------CCCC---------
Confidence 5678899999999999999999999999954 35 899999999985321 0 0122
Q ss_pred ccccccccCCCeeEecC-CCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRP-TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~-~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
+.++|...+..+.. ++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++
T Consensus 56 ---v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 56 ---VSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred ---HHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 33446665666666 999999999999999999999998899999999999864
No 158
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.14 E-value=1e-09 Score=90.38 Aligned_cols=111 Identities=23% Similarity=0.457 Sum_probs=91.2
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++.++.+++++.++++.|.+++.+.+||+++ ++ +++|+++..++++.+........ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~-------~---------- 58 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DG---RLVGIVTERDLLRALAEGGLDPL-------V---------- 58 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECC---CC---CEEEEEeHHHHHHHHHhccCCcc-------c----------
Confidence 4677899999999999999989999999954 34 89999999999987754322110 0
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.+.++|..++..+.+++++.++++.|.+.+.+.+||+|++++++|+++..|+++
T Consensus 59 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 59 --TVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred --cHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 023346678888999999999999999999999999999899999999999864
No 159
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.14 E-value=1e-09 Score=91.14 Aligned_cols=109 Identities=14% Similarity=0.234 Sum_probs=88.3
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
.++++.+++++.+|++.|.+++...++|+++ + +++|+++..++++.+..... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~~~~~-------~~~~---------- 57 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG----D---PRLGIVTRTDLLDAVLLDGL-------PSST---------- 57 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC----C---eEEEEEEHHHHHHHHHcCCC-------CCCC----------
Confidence 3567899999999999999989999999942 4 79999999999876532100 0112
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.+.++|.+++..+.+++++.++++.|.+++...+||+|+ |+++|+++..|+++
T Consensus 58 --~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 58 --PVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred --CHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 233447778899999999999999999999999999984 89999999999874
No 160
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.13 E-value=6.3e-10 Score=116.28 Aligned_cols=115 Identities=14% Similarity=0.170 Sum_probs=95.8
Q ss_pred CCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccc
Q 011558 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 336 (483)
Q Consensus 257 ~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i 336 (483)
+.++++++.+++++.+|+++|.+++++.+||++++..++ +++|+||.+|+.... ....+
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v~------------~~~~~------ 164 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFVN------------DRETK------ 164 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhcc------------ccCCc------
Confidence 457889999999999999999999999999996411135 899999999985321 01223
Q ss_pred cccccccccccCCC--eeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558 337 GTWVPRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 398 (483)
Q Consensus 337 ~~~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~ 398 (483)
+.++|+++ ++++.+++++.+|+++|.+++...+||+|++++++|+||++||++...
T Consensus 165 ------V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 165 ------LSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKG 222 (505)
T ss_pred ------HHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 34458766 889999999999999999999999999999999999999999998665
No 161
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.13 E-value=8.1e-10 Score=91.31 Aligned_cols=108 Identities=20% Similarity=0.409 Sum_probs=86.3
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
+++++.+++++.+|++.|.+++++.+||+++ + +++|+++..++++.+...... ...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~dl~~~~~~~~~~-------~~~~--------- 58 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD----G---RVVGSIDESDLLDALIEGKAK-------FSLP--------- 58 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC----C---eeEEEEeHHHHHHHHhccccc-------cCcC---------
Confidence 4678899999999999999999999999942 4 799999999999876432110 0112
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
+.++|.+++.++.+++++.+++++|.+ . ..+||++++|+++|+++.+|+++
T Consensus 59 ---~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 59 ---VREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred ---HHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 334477788899999999999999987 3 34789988899999999999875
No 162
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.13 E-value=1e-09 Score=90.01 Aligned_cols=102 Identities=19% Similarity=0.394 Sum_probs=86.1
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++..+.+++++.++++.|.+++.+.+||+++ + +++|+++..++++.. ...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~Giv~~~~l~~~~-------------~~~~--------- 52 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED----G---KLVGIITSRDVRRAH-------------PNRL--------- 52 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEehHHhhccc-------------ccCC---------
Confidence 4677899999999999999889999999942 4 899999999987521 0112
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT 394 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~ 394 (483)
+.++|.+++.++.+++++.++++.|.+++...+||+|+ |+++|++|..|++
T Consensus 53 ---~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 53 ---VADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred ---HHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 23447778899999999999999999999999999996 9999999999986
No 163
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.12 E-value=1.6e-09 Score=112.45 Aligned_cols=165 Identities=18% Similarity=0.258 Sum_probs=116.6
Q ss_pred CeeeceeCCCCceeEEeeHHHHHHHHHHhccCC---CCCCHHHHhhccHHHHHHHHhhhhccccCCCCCCCCCCCeEEeC
Q 011558 189 PMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAG 265 (483)
Q Consensus 189 ~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~ 265 (483)
..+|++.+. ..-+|..++..++......+ .+++.++-. ..++..+. ..+ .+.++++++.
T Consensus 33 l~~p~~s~~----mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~----~~V~~Vk~------~~~----~~~~~~vtl~ 94 (450)
T TIGR01302 33 LNIPILSSP----MDTVTESRMAIAMAREGGIGVIHRNMSIEEQA----EQVKRVKR------AEN----GIISDPVTIS 94 (450)
T ss_pred cCCCeeecC----CCccCHHHHHHHHHhcCCCceeecCCCHHHHH----HHHhhhcc------ccC----ceecCceEeC
Confidence 457777643 23468888877776554322 222222110 11111111 111 3456889999
Q ss_pred CCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccccccccc
Q 011558 266 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 345 (483)
Q Consensus 266 ~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~ 345 (483)
+++++.+|++.|.+++++++||++++...+ +++|+++.+|++... . ...+ +.+
T Consensus 95 ~~~tv~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~-----~-------~~~~------------V~d 147 (450)
T TIGR01302 95 PETTVADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVK-----D-------KGKP------------VSE 147 (450)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhh-----c-------CCCC------------HHH
Confidence 999999999999999999999996521114 899999999986421 0 1122 344
Q ss_pred ccC-CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558 346 ANG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 398 (483)
Q Consensus 346 ~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~ 398 (483)
+|. .++.++.+++++.++++.|.+++...+||+|++|+++|+||+.||++...
T Consensus 148 vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 148 VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 487 48999999999999999999999999999999999999999999998543
No 164
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.12 E-value=7.4e-10 Score=95.71 Aligned_cols=109 Identities=21% Similarity=0.304 Sum_probs=79.9
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhccccccccc-------CCccHHHHHhcCCCC
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHL-------DEMNIHQALQLGQDA 422 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l-------~~~~v~~~l~~~~~~ 422 (483)
++.++.+++++.+|++.|.+.+++.+||+|++|+++|+++..|+++............ ....+.++....
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--- 78 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKG--- 78 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhh---
Confidence 4678999999999999999999999999999999999999999998654322111000 001122211100
Q ss_pred CCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeC
Q 011558 423 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA 462 (483)
Q Consensus 423 ~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~ 462 (483)
.-++.|..+++++.+++++.+|++.|.+++++++||+|+
T Consensus 79 -~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 79 -ISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred -hhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 000123457889999999999999999999999999984
No 165
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.11 E-value=7.6e-10 Score=91.71 Aligned_cols=102 Identities=17% Similarity=0.284 Sum_probs=83.4
Q ss_pred eCCCCCHHHHHHHHHhCC-----CceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558 264 AGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (483)
Q Consensus 264 v~~~~sl~~a~~~m~~~~-----~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 338 (483)
+.+++++.++++.|.+++ +..+||+++ ++ +++|+++.+++++. . .+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~~l~~~------~-------~~~~-------- 54 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE---EG---RLLGVVSLRDLLLA------D-------PDTP-------- 54 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECC---CC---CEEEEEEHHHHhcC------C-------Ccch--------
Confidence 568899999999998776 467899954 34 79999999988641 0 0112
Q ss_pred cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 011558 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 396 (483)
Q Consensus 339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l 396 (483)
+.++|.+++..+.+++++.++++.|.+.+...+||+|++|+++|+++..|+++.
T Consensus 55 ----v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 55 ----VSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred ----HHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 334477788999999999999999999999999999988999999999999863
No 166
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.11 E-value=1.8e-09 Score=112.79 Aligned_cols=114 Identities=20% Similarity=0.227 Sum_probs=94.5
Q ss_pred CCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccc
Q 011558 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 336 (483)
Q Consensus 257 ~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i 336 (483)
+..+++++.+++++.+|+++|.+++++.+||++++..++ +++|++|.+|+.. .. . ...+
T Consensus 102 ~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~-~~----~-------~~~~------ 160 (495)
T PTZ00314 102 FIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDF-VK----D-------KSTP------ 160 (495)
T ss_pred cccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhh-cc----c-------CCCC------
Confidence 346778999999999999999999999999996422235 8999999999862 10 0 1222
Q ss_pred cccccccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011558 337 GTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 397 (483)
Q Consensus 337 ~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~ 397 (483)
+.++|++ +++++.+++++.+|+++|.+++...+||+|++++++|+||++||++..
T Consensus 161 ------V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 161 ------VSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred ------HHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 4455876 889999999999999999999999999999999999999999999754
No 167
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.10 E-value=1.2e-09 Score=92.09 Aligned_cols=119 Identities=16% Similarity=0.292 Sum_probs=91.1
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++.++++++++.+|++.|.+.+.+++||+++ ++ +++|+++..++++.......... ..+. ....
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~---------~~~~-~~~~ 65 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDE---EG---RLVGIVTDRDLRDASPSPFTTLS---------EHEL-YLLL 65 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEHHHHHHHhhhhcccch---------hhhh-hhhc
Confidence 4678899999999999999899999999954 35 89999999999876532211100 0000 0011
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
...+.++|..++.++..++++.++++.|.+.+...+||+++ |+++|+++.+|+++
T Consensus 66 ~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 66 KMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred CcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 11344557788899999999999999999999999999986 99999999999864
No 168
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.10 E-value=1.4e-09 Score=95.03 Aligned_cols=126 Identities=25% Similarity=0.466 Sum_probs=95.6
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhcc-C---CCCCCccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK-H---SSSSLPILQQPVSSIQ 335 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~-~---~~~~~~~~~~~v~~l~ 335 (483)
+++++.+++++.+|++.|.+++++.+||+++ + +++|+++..++++++..... . .+.....+..++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~----~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 73 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG----G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREF- 73 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC----C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhe-
Confidence 5678999999999999999999999999952 4 89999999999987753221 0 001111122222222
Q ss_pred cccc-----------ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 336 LGTW-----------VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 336 i~~~-----------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
..| ...+.++|..++.++.+++++.++++.|.+.+.+.+||+++ |+++|+++.+|++.
T Consensus 74 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 74 -INWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred -eehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 111 12456778888999999999999999999999999999987 99999999999863
No 169
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.10 E-value=1.8e-09 Score=88.89 Aligned_cols=105 Identities=20% Similarity=0.432 Sum_probs=87.6
Q ss_pred CCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (483)
Q Consensus 259 ~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 338 (483)
++++++.++.++.+|++.|.+++...+||+++ + +++|+++..+++.. . ...+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~----~---~~~g~v~~~~l~~~------~-------~~~~-------- 53 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN----G---KVVGIVSARDLLGK------D-------PDET-------- 53 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC----C---EEEEEEEHHHhhcc------C-------cccc--------
Confidence 45778999999999999998888889999842 4 89999999998641 0 0112
Q ss_pred cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
+.++|...+.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus 54 ----~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 54 ----VEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred ----HHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 33447778889999999999999999999999999998899999999999874
No 170
>PRK11573 hypothetical protein; Provisional
Probab=99.09 E-value=1.5e-09 Score=111.31 Aligned_cols=122 Identities=13% Similarity=0.224 Sum_probs=99.4
Q ss_pred ccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558 342 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 418 (483)
Q Consensus 342 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~ 418 (483)
+++++|.+ ++.+++.++++.++++.+.+++++++||.++ .+.++|++..+|++.....+. +.......+
T Consensus 188 ~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~-------~~~~~~l~~- 259 (413)
T PRK11573 188 TVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK-------EFTKENMLR- 259 (413)
T ss_pred ChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC-------cCCHHHHHh-
Confidence 45666865 5899999999999999999999999999976 378999999999987543211 011222111
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558 419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 482 (483)
Q Consensus 419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~ 482 (483)
++ +++..++.+.++.++++.|.+++.|-..|+| |.|...|+||+.||++.++|
T Consensus 260 ---------~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD-EyG~~~GiVTleDilEeivG 312 (413)
T PRK11573 260 ---------AA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVG 312 (413)
T ss_pred ---------hc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-cCCCeEEEeeHHHHHHHHhC
Confidence 12 2578899999999999999999999999999 68999999999999999987
No 171
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.08 E-value=1.6e-09 Score=89.01 Aligned_cols=100 Identities=19% Similarity=0.294 Sum_probs=84.2
Q ss_pred EEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccccc
Q 011558 262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP 341 (483)
Q Consensus 262 v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~ 341 (483)
+++.+++++.+|++.|.+.+.+.+||+++ + +++|+++..++++... .++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~--------------~~~---------- 52 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY----N---KFLGAVYLKDIENATY--------------GDV---------- 52 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC----C---EEEEEEEHHHHhhhcc--------------cch----------
Confidence 46789999999999999999999999942 4 8999999999875310 112
Q ss_pred ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.++|...+.++.++.++.++++.|.+++...+||+| +|+++|++|.+|++.
T Consensus 53 --~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 53 --VDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred --hhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 233667788999999999999999999999999998 699999999999864
No 172
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.07 E-value=1.4e-09 Score=111.01 Aligned_cols=122 Identities=17% Similarity=0.265 Sum_probs=104.7
Q ss_pred cccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhC-----CCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCC
Q 011558 247 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS 321 (483)
Q Consensus 247 ~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~-----~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~ 321 (483)
++..+.+|+.|...++.+.++.|+.+|+..+.+. .+..+.|+|. ++ ++.|+++.++++..
T Consensus 128 ~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~---~~---~L~Gvvsl~~Ll~a--------- 192 (451)
T COG2239 128 SYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE---KG---KLLGVVSLRDLLTA--------- 192 (451)
T ss_pred CCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECC---cc---ceEEEeeHHHHhcC---------
Confidence 3889999999999999999999999999999853 4678899965 44 89999999998641
Q ss_pred CCCcccccccccccccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558 322 SSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 399 (483)
Q Consensus 322 ~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~ 399 (483)
....+ +.++|.+.++++.++++.+++.+++.+++.-++||||++++++|++|..|++..+.+
T Consensus 193 ----~~~~~------------i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e 254 (451)
T COG2239 193 ----EPDEL------------LKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE 254 (451)
T ss_pred ----CcHhH------------HHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence 01233 344598899999999999999999999999999999999999999999999987664
No 173
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.05 E-value=2.7e-09 Score=88.05 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=85.8
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
....+.+++++.++.+.|.+.+...+||+++...+| +++|+++..++.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~---~~~G~v~~~dl~~~~~~------------------------ 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESP---RLVGYILRSQLVVALKN------------------------ 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCC---EEEEEEeHHHHHHHHHH------------------------
Confidence 356789999999999999998888999994310035 89999999998775421
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
+|.+++.++.+++++.++++.|.+++...+||++ +|+++|+++++|+.+
T Consensus 56 ------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 ------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred ------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 2666788999999999999999999999999995 789999999999875
No 174
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.03 E-value=2.2e-09 Score=115.44 Aligned_cols=118 Identities=16% Similarity=0.266 Sum_probs=96.8
Q ss_pred CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558 256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 335 (483)
Q Consensus 256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~ 335 (483)
+|.++..++++++++.++++.|.+++.+.+||+|+ ++ +++|+++.+|+++.+...... ...
T Consensus 452 im~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~---~g---~lvGiVt~~dL~~~l~~~~~~-------~~~------ 512 (574)
T PRK01862 452 LIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD---DG---RFRGAVALKDITSDLLDKRDT-------TDK------ 512 (574)
T ss_pred HhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC---CC---eEEEEEEHHHHHHHhhccccc-------ccc------
Confidence 45677889999999999999999999999999964 45 899999999998755321100 011
Q ss_pred ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CcEEEEEeHHHHHHHHh
Q 011558 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITALAK 398 (483)
Q Consensus 336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGiit~~di~~l~~ 398 (483)
.+.++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|++|++|+++...
T Consensus 513 ------~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 513 ------TAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred ------hHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 2445588889999999999999999999999999999876 58999999999998654
No 175
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.01 E-value=2.8e-09 Score=103.53 Aligned_cols=108 Identities=16% Similarity=0.226 Sum_probs=89.6
Q ss_pred CCCCC-eEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccc
Q 011558 256 PCPRP-LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI 334 (483)
Q Consensus 256 ~~~~~-~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l 334 (483)
+|.++ +..+.+++++.+|++.|.+.+++.+||+++ +| +++|+++..|+++.+.... ....+
T Consensus 160 im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~---~g---~~~Givt~~dl~~~~~~~~--------~~~~~---- 221 (268)
T TIGR00393 160 LMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE---NN---QLVGVFTDGDLRRALLGGG--------SLKSE---- 221 (268)
T ss_pred HhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC---CC---CEEEEEEcHHHHHHHhcCC--------cccCc----
Confidence 45666 889999999999999999999999999964 45 8999999999988643110 01222
Q ss_pred cccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEe
Q 011558 335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 389 (483)
Q Consensus 335 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit 389 (483)
+.++|.+++.++.+++++.+|+++|.+.+...+||+|++|+++|+|+
T Consensus 222 --------v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 222 --------VRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred --------HHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 44558888999999999999999999999999999998899999985
No 176
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.00 E-value=3.6e-09 Score=88.95 Aligned_cols=113 Identities=12% Similarity=0.192 Sum_probs=87.1
Q ss_pred CeEEeCCCCCHHHHHHHHHhCC-CceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 338 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~-~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~ 338 (483)
++.++.+++++.+|++.|.+++ .+.+||++ . | +++|+++..++++++...... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd--~--~---~~~G~v~~~~l~~~~~~~~~~-----~~~----------- 58 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVD--D--G---RPVGLIMREALMELLSTPYGR-----ALY----------- 58 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEE--C--C---eeEEEEEHHHHHHHHhchhhH-----HHH-----------
Confidence 4567889999999999998877 88999994 3 4 899999999998765321100 000
Q ss_pred cccccccccCCCeeEecCCCCHHHHHHHHHhCCCC---EEEEEcCCCcEEEEEeHHHHHH
Q 011558 339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVS---SIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 339 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~---~lpVvd~~g~lvGiit~~di~~ 395 (483)
....+.++|..++..+.+++++.++++.|.+.+.. ..||++++|+++|+++..|+++
T Consensus 59 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 01134556888899999999999999999988753 4578888899999999999864
No 177
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.97 E-value=6.4e-09 Score=107.57 Aligned_cols=119 Identities=18% Similarity=0.324 Sum_probs=98.6
Q ss_pred cccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEc-CCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcC
Q 011558 343 IGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVD-DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 419 (483)
Q Consensus 343 v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~ 419 (483)
++++|.+ ++..++.+.++.++.+.+.+++++++||++ ..+.++|++..+|++.....+.. . ......
T Consensus 208 v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~-----~~~~~~---- 277 (429)
T COG1253 208 VREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-D-----LDLRVL---- 277 (429)
T ss_pred eeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-c-----cchhhc----
Confidence 4455764 688999999999999999999999999999 56789999999999986654321 0 111110
Q ss_pred CCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558 420 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 482 (483)
Q Consensus 420 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~ 482 (483)
+ ++++.++++.++.+++++|.+.+.|-..|+| |.|.+.|+||+.||++.++|
T Consensus 278 --------~--~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD-EyG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 278 --------V--RPPLFVPETLSLSDLLEEFREERTHMAIVVD-EYGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred --------c--cCCeEecCCCcHHHHHHHHHHhCCeEEEEEE-cCCCeEEEeEHHHHHHHHhC
Confidence 1 1578999999999999999999999999999 68999999999999999987
No 178
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.96 E-value=5.3e-09 Score=100.13 Aligned_cols=110 Identities=15% Similarity=0.266 Sum_probs=94.8
Q ss_pred CCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccc
Q 011558 258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG 337 (483)
Q Consensus 258 ~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~ 337 (483)
......+.+++++.+-.++-.+.+.+|+||+|. .. +++|++|.+|++..- -+.+
T Consensus 197 ~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~---~~---kvvGvVt~rDv~~~~-------------~~t~------- 250 (432)
T COG4109 197 LEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR---SM---KVVGVVTMRDVLDKK-------------PSTT------- 250 (432)
T ss_pred cccceeccccccHHHHHHHHHHcCCCccceecc---cc---eEEEEEEehhhhcCC-------------CCcc-------
Confidence 356778899999999999999999999999965 33 899999999986521 1222
Q ss_pred ccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558 338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 398 (483)
Q Consensus 338 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~ 398 (483)
+..+|++++.++.+.+++..+.++|.=.++.-+||+|++.+++|++|++|+++.+.
T Consensus 251 -----ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 251 -----IEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred -----HHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence 33459999999999999999999999999999999999999999999999998655
No 179
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.92 E-value=6.6e-09 Score=106.13 Aligned_cols=117 Identities=17% Similarity=0.277 Sum_probs=100.3
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ 414 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~ 414 (483)
...++.+|+..++++.++.|+.+++..+++. ....+.|+|++++++|+++.++++.... +..+.+
T Consensus 131 e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~----------~~~i~~ 200 (451)
T COG2239 131 EDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEP----------DELLKD 200 (451)
T ss_pred hhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCc----------HhHHHH
Confidence 3456677999999999999999999999843 4578999999999999999999874211 234455
Q ss_pred HHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558 415 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 480 (483)
Q Consensus 415 ~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l 480 (483)
+|.+.++++.+++..+++.+.|.+++.-.+|||| ++++++|+||..|++..+
T Consensus 201 -------------im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd-~~~~LiG~itiDDiidvi 252 (451)
T COG2239 201 -------------LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD-EDNRLIGIITIDDIIDVI 252 (451)
T ss_pred -------------HhcccceeecccCCHHHHHHHHHHhCCeecceEC-CCCceeeeeeHHHHHHHH
Confidence 6777799999999999999999999999999999 589999999999999865
No 180
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.92 E-value=2.3e-08 Score=82.22 Aligned_cols=104 Identities=22% Similarity=0.376 Sum_probs=85.1
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
++.++.+++++.+++..|.+.+.+.+||+++ .+ +++|+++..++++.. . ..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~g~v~~~~l~~~~----~---------~~~--------- 53 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK---SG---ELVGIITRKDLLRNP----E---------EEQ--------- 53 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEHHHHHhcc----c---------cch---------
Confidence 4678889999999999999888899999954 34 799999999986420 0 011
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
+.++|..++.++..++++.++++.|.+.+...+||+|+ |+++|+++..|+++
T Consensus 54 ---~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 54 ---LALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred ---HHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 22336677888999999999999999999999999984 79999999999864
No 181
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.90 E-value=1.3e-08 Score=87.83 Aligned_cols=113 Identities=20% Similarity=0.193 Sum_probs=79.0
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCC-Ccccc---ccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS-LPILQ---QPVSSIQ 335 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~-~~~~~---~~v~~l~ 335 (483)
.+.++.+++++.+|++.|.+++++.+||+|+ +| +++|++|..|+++++.......... ...+. ..+.++.
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~---~g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 75 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS---DD---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVC 75 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHh
Confidence 4678999999999999999999999999954 45 8999999999999875321110000 00000 0011110
Q ss_pred ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC
Q 011558 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN 381 (483)
Q Consensus 336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 381 (483)
. ...+.+.|..+++++.+++++.+|+++|.+++++.+||+|++
T Consensus 76 --~-~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 76 --T-KGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred --h-hhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 0 001122345778899999999999999999999999999864
No 182
>PRK11573 hypothetical protein; Provisional
Probab=98.89 E-value=5.9e-08 Score=99.58 Aligned_cols=166 Identities=19% Similarity=0.207 Sum_probs=122.6
Q ss_pred hccccccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhh
Q 011558 152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET 231 (483)
Q Consensus 152 l~~~~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~~l~~~~l~~ 231 (483)
|+..++.|+|-+-.+++.++.+.|+.++++.+.+++.+..||++.+..+++|++...|++..+.. ....
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~----~~~~------- 252 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE----KKEF------- 252 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc----cCcC-------
Confidence 35788999999999999999999999999999999999999999887899999999999864321 0111
Q ss_pred ccHHHHHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHH
Q 011558 232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311 (483)
Q Consensus 232 ~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~ 311 (483)
....+.+ ..+++..+++++++.++++.|.+++.|-..|+|+ -| ...|+||..||+.
T Consensus 253 -~~~~l~~-----------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE---yG---~~~GiVTleDilE 308 (413)
T PRK11573 253 -TKENMLR-----------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE---YG---DIQGLVTVEDILE 308 (413)
T ss_pred -CHHHHHh-----------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec---CC---CeEEEeeHHHHHH
Confidence 1111111 1356788999999999999999999999999965 45 6899999999999
Q ss_pred HHHhhccCCCCCCcccccccccccccccccccccccCCCeeEecCCCCHHHHHHHH
Q 011558 312 CICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 367 (483)
Q Consensus 312 ~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m 367 (483)
.+......... ......+.... .....++...++.++.+.+
T Consensus 309 eivGei~de~d--~~~~~~i~~~~-------------~~~~~v~G~~~l~d~~~~l 349 (413)
T PRK11573 309 EIVGDFTTSMS--PTLAEEVTPQN-------------DGSVIIDGTANVREINKAF 349 (413)
T ss_pred HHhCCCCcccC--cccccceEEec-------------CCEEEEEeeeEHHHHHHHh
Confidence 88754332110 00001122221 2345678888888888776
No 183
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.88 E-value=5.6e-09 Score=75.83 Aligned_cols=54 Identities=28% Similarity=0.409 Sum_probs=50.5
Q ss_pred cCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558 428 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 482 (483)
Q Consensus 428 ~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~ 482 (483)
+|.++++++.+++++.++++.|.+++++++||+| ++|+++|+||.+||+++++.
T Consensus 4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d-~~~~~~G~is~~dl~~~l~~ 57 (57)
T PF00571_consen 4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVD-EDGKLVGIISRSDLLKALLD 57 (57)
T ss_dssp HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEES-TTSBEEEEEEHHHHHHHHHG
T ss_pred CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe-cCCEEEEEEEHHHHHhhhhC
Confidence 6777899999999999999999999999999999 57999999999999999863
No 184
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.87 E-value=5.9e-09 Score=75.70 Aligned_cols=56 Identities=30% Similarity=0.519 Sum_probs=51.8
Q ss_pred cccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558 343 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 398 (483)
Q Consensus 343 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~ 398 (483)
|+++|.++++++.+++++.++++.|.+++++++||+|++|+++|++|.+||++.+.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 35679999999999999999999999999999999999999999999999998653
No 185
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.86 E-value=2.4e-08 Score=104.60 Aligned_cols=114 Identities=12% Similarity=0.234 Sum_probs=90.4
Q ss_pred CCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccc
Q 011558 256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 335 (483)
Q Consensus 256 ~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~ 335 (483)
+|.+++.++.+++++.+|++.|.+++++.+||+++ ++ +++|+||..|+++.+...... ...
T Consensus 340 im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~-------~~~------ 400 (454)
T TIGR01137 340 LHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE---AG---KVLGSVTLRELLSALFAGKAN-------PDD------ 400 (454)
T ss_pred hCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHhccCCC-------cCC------
Confidence 46778999999999999999999999999999954 45 899999999998866421100 111
Q ss_pred ccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011558 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 397 (483)
Q Consensus 336 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~ 397 (483)
.+.++|.+++.++.+++++.+++++|.+++ .|+|+++++++|+||++||++.+
T Consensus 401 ------~v~~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 401 ------AVSKVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred ------CHHHhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 234458888889999999999999998754 35555579999999999998753
No 186
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.74 E-value=4.3e-08 Score=76.84 Aligned_cols=74 Identities=31% Similarity=0.465 Sum_probs=60.2
Q ss_pred EEEEEecCC-CceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCC-ceEEEEEEEcCeeeeCCCCCeeeCCCCCee
Q 011558 22 PVRFIWPNG-GRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPP-GHHQYKFYVDGEWRHDENQPHVSGNYGVVN 97 (483)
Q Consensus 22 ~~~f~~~~~-~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~-g~~~ykf~vdg~w~~d~~~~~~~~~~g~~n 97 (483)
.++|++..+ +++|.|.+.|++|....+|.+.+ +|.|++.+++.. |.|.|+|+++|.|.+++.++...+.....+
T Consensus 5 ~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~~--~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~ 80 (83)
T cd02688 5 GVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKVE--DGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEGGSGDS 80 (83)
T ss_pred cEEEEEECCCCCEEEEEEEECCCCCcccCEECC--CceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcCCcccc
Confidence 577877554 79999999999976668998876 699999999998 999999999999999997765554443333
No 187
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.65 E-value=5.6e-07 Score=88.01 Aligned_cols=167 Identities=16% Similarity=0.191 Sum_probs=119.5
Q ss_pred HcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCC---CCCCHHHHhhccHHHHHHHHhhhhccccCCCCCCCCCCCe
Q 011558 185 EQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPL 261 (483)
Q Consensus 185 e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~ 261 (483)
.+.....|++.+ ...-+|..+.+-.+..+.-.+ .+-+.+ .....+..|+.....+ ..++
T Consensus 57 r~itl~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe-~QA~~v~~vK~~~~g~-------------~~~p 118 (503)
T KOG2550|consen 57 RNITLNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPE-DQADMVRRVKNYENGF-------------INNP 118 (503)
T ss_pred hcccccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHH-HHHHHHHHHHHhhccc-------------ccCC
Confidence 344556688765 455678888887665544221 223322 2222344555443322 2456
Q ss_pred EEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccccc
Q 011558 262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP 341 (483)
Q Consensus 262 v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~ 341 (483)
+.+.|+.++.++++.-..+++..+||.....-. ++++|+||-+|| .++-.+ ...
T Consensus 119 ~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~---~KLvG~vtsrdi-~f~~~~-----------~~~----------- 172 (503)
T KOG2550|consen 119 IVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRG---SKLVGIITSRDI-QFLEDN-----------SLL----------- 172 (503)
T ss_pred cccCCcccchhhhhhcccccccccccccCCccc---ceeEEEEehhhh-hhhhcc-----------cch-----------
Confidence 789999999999999889999999999543333 399999999996 444111 122
Q ss_pred ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 011558 342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 396 (483)
Q Consensus 342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l 396 (483)
+.++|.+..++.....++.++-+++.+.+...+||||++|.++.++++.||.+.
T Consensus 173 -~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 173 -VSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred -hhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 344588888899999999999999999999999999999999999999999873
No 188
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.65 E-value=4.7e-07 Score=91.24 Aligned_cols=111 Identities=16% Similarity=0.238 Sum_probs=90.8
Q ss_pred CCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcc
Q 011558 348 GRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG 427 (483)
Q Consensus 348 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~ 427 (483)
........++.+..++++.|...+...+.|+|+++++.|.++.+++....... ..+.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~------------- 306 (363)
T TIGR01186 249 NTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKA---------QGLQD------------- 306 (363)
T ss_pred cccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcC---------Cchhh-------------
Confidence 33444566777899999999999999999999999999999999987755422 12333
Q ss_pred cCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558 428 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 482 (483)
Q Consensus 428 ~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~ 482 (483)
.+...+.++.++++|.+++..|.+++.. +|||| ++|+++|+||..+|+++|.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 307 VLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVD-EDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred hhccCCceECCCCcHHHHHHHHHhCCCC-EEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence 2223467899999999999999999998 99999 58999999999999999864
No 189
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.64 E-value=1.1e-07 Score=86.45 Aligned_cols=120 Identities=14% Similarity=0.361 Sum_probs=100.2
Q ss_pred ccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhc
Q 011558 342 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 418 (483)
Q Consensus 342 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~ 418 (483)
+|+|+|.+ ..+++..+.++.+++..+.+...|++||+.+ .+.+.|++-..||++++..... .+.+.+.|
T Consensus 68 ~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~------~F~i~~lL-- 139 (293)
T COG4535 68 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE------PFDIKELL-- 139 (293)
T ss_pred hHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc------cccHHHhc--
Confidence 34455654 4788999999999999999999999999975 5689999999999997653321 14556644
Q ss_pred CCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558 419 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 482 (483)
Q Consensus 419 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~ 482 (483)
+|.+.++.+-.+...++-|...+.|...||| +-|-+-|.||..||+..++|
T Consensus 140 ------------RPav~VPESKrvd~lLkeFR~~RnHMAIViD-EfGgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 140 ------------RPAVVVPESKRVDRLLKEFRSQRNHMAIVID-EFGGVSGLVTIEDILEQIVG 190 (293)
T ss_pred ------------ccceecccchhHHHHHHHHHhhcCceEEEEe-ccCCeeeeEEHHHHHHHHhc
Confidence 3577889999999999999999999999999 68999999999999999987
No 190
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=6.6e-07 Score=91.31 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=86.8
Q ss_pred ecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCcccCCCcc
Q 011558 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRC 433 (483)
Q Consensus 354 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~~~~ 433 (483)
..++.+..+++..|...+.+.+.|+|++++++|+++..++....... .++.+.+ ....
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~-------------~~~~ 347 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQ---------QGLDAAL-------------IDAP 347 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcC---------Cchhhhh-------------ccCC
Confidence 34667889999999999999999999999999999999997654422 1233322 2346
Q ss_pred eEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558 434 QMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 482 (483)
Q Consensus 434 ~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~ 482 (483)
.++.++++|.+++..|.++... +|||| ++|+++|+||..++++.|.+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 348 LAVDAQTPLSELLSHVGQAPCA-VPVVD-EDQQYVGIISKGMLLRALDR 394 (400)
T ss_pred ceeCCCCCHHHHHHHHHhCCCc-EEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence 7899999999999999998776 99999 58999999999999999854
No 191
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.58 E-value=1.8e-06 Score=89.39 Aligned_cols=136 Identities=21% Similarity=0.352 Sum_probs=109.3
Q ss_pred HHHHHHhh--ccccccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCC
Q 011558 145 RDRISSFL--STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS 222 (483)
Q Consensus 145 ~~~~~~fl--~~~~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~ 222 (483)
+.-|+..| .++++-+.|-.-..++.++.+.++.++.+.+.+++.+..||++.....++|++...|++..+.....
T Consensus 194 ~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~--- 270 (429)
T COG1253 194 REMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS--- 270 (429)
T ss_pred HHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---
Confidence 34444443 5788999999889999999999999999999999999999999777899999999999865532100
Q ss_pred CCCHHHHhhccHHHHHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEE
Q 011558 223 NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY 302 (483)
Q Consensus 223 ~l~~~~l~~~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~G 302 (483)
... .. . .-++++.+++.+++.++++.|.+.+.|...|+|+ -| .+.|
T Consensus 271 ~~~--------~~------~--------------~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE---yG---~~~G 316 (429)
T COG1253 271 DLD--------LR------V--------------LVRPPLFVPETLSLSDLLEEFREERTHMAIVVDE---YG---GVEG 316 (429)
T ss_pred ccc--------hh------h--------------cccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc---CC---CeEE
Confidence 000 00 0 0237889999999999999999999999999965 45 6999
Q ss_pred EechhhHHHHHHhhc
Q 011558 303 LASLSDILKCICRHF 317 (483)
Q Consensus 303 iit~~dIl~~l~~~~ 317 (483)
++|..||+..+....
T Consensus 317 lVTleDIiEeIvGei 331 (429)
T COG1253 317 LVTLEDIIEEIVGEI 331 (429)
T ss_pred EeEHHHHHHHHhCCC
Confidence 999999999987543
No 192
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.52 E-value=4.5e-07 Score=73.66 Aligned_cols=66 Identities=27% Similarity=0.554 Sum_probs=49.2
Q ss_pred EEEE-ecCCCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEEc--------CCc-eEEEEEEE-cCee--eeCCCCCe
Q 011558 23 VRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL--------PPG-HHQYKFYV-DGEW--RHDENQPH 88 (483)
Q Consensus 23 ~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~l--------~~g-~~~ykf~v-dg~w--~~d~~~~~ 88 (483)
++|+ |...|++|+|+|+||+|++. .+|.+.+ .|.|++.++. +.| .|+|++.. ||+| +.||-...
T Consensus 7 ~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~--~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~~ 84 (99)
T cd02854 7 VTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDE--FGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIKY 84 (99)
T ss_pred EEEEEECCCCCEEEEEccCCCCCCcCcccEECC--CCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcceeE
Confidence 5565 56679999999999999874 6899875 8999999875 345 56666666 7875 57775554
Q ss_pred ee
Q 011558 89 VS 90 (483)
Q Consensus 89 ~~ 90 (483)
+.
T Consensus 85 ~~ 86 (99)
T cd02854 85 VT 86 (99)
T ss_pred EE
Confidence 44
No 193
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.47 E-value=9.7e-07 Score=85.80 Aligned_cols=121 Identities=14% Similarity=0.285 Sum_probs=100.0
Q ss_pred ccccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhccc-ccccccCCccHHHHHh
Q 011558 342 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKA-YAQIHLDEMNIHQALQ 417 (483)
Q Consensus 342 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~di~~l~~~~~-~~~~~l~~~~v~~~l~ 417 (483)
+|.|+|.+ .+..+..+++.+++.+.+....+.++|+-.+ -+.++|++..+|+++++.++. +.. ..+..++
T Consensus 201 tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k-----~d~~~~a- 274 (423)
T COG4536 201 TVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTK-----EDILRAA- 274 (423)
T ss_pred eeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccH-----hHHHHHh-
Confidence 56677854 5888999999999999999999999999954 356999999999999887553 221 2223222
Q ss_pred cCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558 418 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 482 (483)
Q Consensus 418 ~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~ 482 (483)
.++.+++.++++.+-+..|.+++-|--.||| |-|.+.|+||+.||++-++|
T Consensus 275 -------------~epyFVPe~Tpl~~QL~~F~~~k~hialVVD-EYG~i~GLVTLEDIlEEIVG 325 (423)
T COG4536 275 -------------DEPYFVPEGTPLSDQLVAFQRNKKHIALVVD-EYGDIQGLVTLEDILEEIVG 325 (423)
T ss_pred -------------cCCeecCCCCcHHHHHHHHHHhcceEEEEEe-ccCcEEeeeeHHHHHHHHhc
Confidence 1467899999999999999999999999999 69999999999999999886
No 194
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.43 E-value=4.5e-07 Score=93.05 Aligned_cols=135 Identities=20% Similarity=0.325 Sum_probs=105.0
Q ss_pred ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCC-----CcEEEEEeHHHHHHHHhccccccc-----cc---C
Q 011558 342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN-----DSLLDIYSRSDITALAKDKAYAQI-----HL---D 408 (483)
Q Consensus 342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----g~lvGiit~~di~~l~~~~~~~~~-----~l---~ 408 (483)
.++|+|+++++++..-+.+....+.+.....+.+||+|+. +++.|+|-++.++.+++++.+... .+ .
T Consensus 583 ~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~ 662 (762)
T KOG0474|consen 583 TAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRR 662 (762)
T ss_pred hHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhh
Confidence 5679999999999999999999999999999999999962 578999999999998875544311 00 1
Q ss_pred CccHHHHHhcCC---------------CCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeh
Q 011558 409 EMNIHQALQLGQ---------------DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL 473 (483)
Q Consensus 409 ~~~v~~~l~~~~---------------~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~ 473 (483)
..+.+++..+.. .+..| +|...++++..++++..+..+|.+-+.|++.||. ..++++|++|+
T Consensus 663 ~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p--~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~-~~~~~~gilTR 739 (762)
T KOG0474|consen 663 KFTFRDFAKREPSIEDVHLTSEEMEMYVDLHP--FMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVP-KTNRVVGILTR 739 (762)
T ss_pred cCCHHHhhhcCCchhhhhcchHhHhhcccccc--ccCCCCcccCcccchHHHHHHHHHhcceeEEEec-CCCceeEEEeh
Confidence 122222222110 00111 6888899999999999999999999999999999 46888999999
Q ss_pred HHHHHH
Q 011558 474 SDVFRF 479 (483)
Q Consensus 474 ~DIl~~ 479 (483)
+|+.++
T Consensus 740 ~D~~~~ 745 (762)
T KOG0474|consen 740 KDLARY 745 (762)
T ss_pred hhhhhH
Confidence 999854
No 195
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.41 E-value=4.4e-06 Score=81.35 Aligned_cols=131 Identities=21% Similarity=0.307 Sum_probs=107.2
Q ss_pred ccccccccCCCCccEEEEccCcCHHHHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhc
Q 011558 153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 232 (483)
Q Consensus 153 ~~~~~~d~~p~s~kvi~l~~~~~v~~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~~l~~~~l~~~ 232 (483)
..-|+.|+|-.-+.++.+|.+++.++.++.+...-...+|||..+..+.+||+...|++.++.... +.+.+++
T Consensus 198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~----~~~k~d~--- 270 (423)
T COG4536 198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKN----EFTKEDI--- 270 (423)
T ss_pred ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccC----cccHhHH---
Confidence 356899999888999999999999999999999999999999988889999999999887775321 1322322
Q ss_pred cHHHHHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHH
Q 011558 233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312 (483)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~ 312 (483)
. +. ..+++.++..+++.+-+..+.+++-|-..|+|+ =| .+.|++|.+||+.-
T Consensus 271 -----~---~~--------------a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE---YG---~i~GLVTLEDIlEE 322 (423)
T COG4536 271 -----L---RA--------------ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE---YG---DIQGLVTLEDILEE 322 (423)
T ss_pred -----H---HH--------------hcCCeecCCCCcHHHHHHHHHHhcceEEEEEec---cC---cEEeeeeHHHHHHH
Confidence 1 11 246788999999999999999999888889965 45 79999999999998
Q ss_pred HHhhcc
Q 011558 313 ICRHFK 318 (483)
Q Consensus 313 l~~~~~ 318 (483)
+...+.
T Consensus 323 IVGdft 328 (423)
T COG4536 323 IVGDFT 328 (423)
T ss_pred Hhcccc
Confidence 865443
No 196
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.40 E-value=2e-06 Score=78.45 Aligned_cols=118 Identities=11% Similarity=0.108 Sum_probs=96.9
Q ss_pred CCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCcccccccccc
Q 011558 255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI 334 (483)
Q Consensus 255 ~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l 334 (483)
++++..++++..+.++.+++..+.+...+|+||+.++ . +.+.||+-.+|+|+++...... ..+++
T Consensus 73 MIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed--k---D~v~GIL~AKDLL~~~~~~~~~---------F~i~~- 137 (293)
T COG4535 73 MIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED--K---DHVEGILLAKDLLPFMRSDAEP---------FDIKE- 137 (293)
T ss_pred cccHHHheeccccCCHHHHHHHHHHhccccCCcccCC--c---hhhhhhhhHHHHHHHhcCCccc---------ccHHH-
Confidence 4667789999999999999999999999999999542 2 2799999999999987432111 11222
Q ss_pred cccccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558 335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 399 (483)
Q Consensus 335 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~ 399 (483)
+-+|.+.++++-.+...++-++.++.+-..|+|+-|.+-|++|..|++..+-.
T Consensus 138 ------------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 138 ------------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVG 190 (293)
T ss_pred ------------hcccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhc
Confidence 23577889999999999999999999999999999999999999999986653
No 197
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.33 E-value=1.2e-06 Score=85.86 Aligned_cols=107 Identities=19% Similarity=0.282 Sum_probs=90.6
Q ss_pred CeeEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCCCCCCc
Q 011558 350 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 426 (483)
Q Consensus 350 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~ 426 (483)
+++.+.++.++.++++....++++.+||..+ ..+++|+||.+|+-.+ .+. ...+.+
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~~--------~~~~~~------------ 175 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-EDN--------SLLVSD------------ 175 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-hcc--------cchhhh------------
Confidence 5677899999999999999999999999964 4689999999999776 211 133444
Q ss_pred ccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 427 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 427 ~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
+|..+.++...+.+|.++-+++.+++-..+|||| ++|.++.+|+++|+.+.
T Consensus 176 -vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~-~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 176 -VMTKNPVTGAQGITLKEANEILKKIKKGKLPVVD-DKGELVAMLSRTDLMKN 226 (503)
T ss_pred -hcccccccccccccHHHHHHHHHhhhcCCcceec-cCCceeeeeehhhhhhh
Confidence 6666678888899999999999999999999999 58999999999999874
No 198
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.27 E-value=1.4e-05 Score=80.67 Aligned_cols=108 Identities=11% Similarity=0.222 Sum_probs=87.5
Q ss_pred EEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccccc
Q 011558 262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP 341 (483)
Q Consensus 262 v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~ 341 (483)
....++.+..+++..|...+...+.|++. .+ ++.|.++..++.+++... ..+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~------------~~~---------- 304 (363)
T TIGR01186 253 ITKTADKGPRSALQLMRDERVDSLYVVDR---QN---KLVGVVDVESIKQARKKA------------QGL---------- 304 (363)
T ss_pred eeecCCCCHHHHHHHHHhcCCceEEEEcC---CC---CEEEEEeHHHHHHHhhcC------------Cch----------
Confidence 45667788999999999999999999954 34 799999999987765321 111
Q ss_pred ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 011558 342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK 400 (483)
Q Consensus 342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~ 400 (483)
.+.+...+.++.+++++.+++..|.+++.. +||+|++|+++|+|++.+++..+...
T Consensus 305 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 305 --QDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred --hhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence 222555677899999999999999999988 99999999999999999999876543
No 199
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.24 E-value=6e-07 Score=70.94 Aligned_cols=57 Identities=32% Similarity=0.681 Sum_probs=44.4
Q ss_pred EEEEE-ecCCCceEEEEeccCC-CCCC-CCCCc-CCCCCCeEEEEEE--cCCceEEEEEEEcCee
Q 011558 22 PVRFI-WPNGGRRVSLSGSFTR-WSEP-MPMSP-SEGCPAVFQIICR--LPPGHHQYKFYVDGEW 80 (483)
Q Consensus 22 ~~~f~-~~~~~~~V~l~Gsf~~-W~~~-~~m~~-~~~~~~~~~~~~~--l~~g~~~ykf~vdg~w 80 (483)
.++|+ |...|++|.|++.|++ |... ++|.+ .+ +|+|+++++ +++|.++|+|+|+|..
T Consensus 12 ~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~--~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 12 GVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDD--DGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp EEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECT--TTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred EEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCC--CCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 35554 5667999999999999 8754 69984 44 899999999 8889888888887664
No 200
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.13 E-value=2.8e-05 Score=79.41 Aligned_cols=105 Identities=13% Similarity=0.148 Sum_probs=84.6
Q ss_pred eCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccccccc
Q 011558 264 AGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI 343 (483)
Q Consensus 264 v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v 343 (483)
..++.+..+|+..|...+...+.|+|. ++ +++|+++..++.+..... ..+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~------------~~~~----------- 340 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIER---GN---KFVGAVSIDSLKTALTQQ------------QGLD----------- 340 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcC---CC---cEEEEEeHHHHHhhhhcC------------Cchh-----------
Confidence 446778999999999999999999965 45 899999999987654211 1111
Q ss_pred ccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc
Q 011558 344 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 399 (483)
Q Consensus 344 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~ 399 (483)
+.+.....++.+++++.+++..+.+.... +||+|++|+++|+|++.++++.+..
T Consensus 341 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 341 -AALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDR 394 (400)
T ss_pred -hhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 22445677899999999999999987765 9999999999999999999996653
No 201
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.94 E-value=1.9e-05 Score=65.96 Aligned_cols=54 Identities=26% Similarity=0.468 Sum_probs=49.3
Q ss_pred ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
++.++|.+++.++.+++++.++++.|.+.+...+||+|++|+++|+++.+||.+
T Consensus 59 ~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 59 RVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 456678889999999999999999999999999999999899999999999864
No 202
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.89 E-value=6.3e-05 Score=60.70 Aligned_cols=54 Identities=28% Similarity=0.482 Sum_probs=42.7
Q ss_pred eEEEEEecC---CCceEEEEec---cCCCCCC--CCCCcCCCCCCeEEEEEEcCCc-eEEEEEEE
Q 011558 21 VPVRFIWPN---GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (483)
Q Consensus 21 ~~~~f~~~~---~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v 76 (483)
|+++|..++ .|.+|+|+|+ |.+|++. .+|.... .+.|++++.||+| .++|||++
T Consensus 1 v~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~--~~~W~~~v~l~~~~~~eYKy~~ 63 (95)
T cd05808 1 VAVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAAT--YPVWSGTVDLPAGTAIEYKYIK 63 (95)
T ss_pred CeEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCC--CCCEEEEEEeCCCCeEEEEEEE
Confidence 356666643 4789999995 7899864 5887765 6889999999987 69999997
No 203
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.82 E-value=5.7e-05 Score=51.49 Aligned_cols=47 Identities=28% Similarity=0.483 Sum_probs=42.6
Q ss_pred ceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558 433 CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 480 (483)
Q Consensus 433 ~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l 480 (483)
+.++.+++++.++++.|.+.+.+++||++ ++++++|+++..|+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVD-EEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEEC-CCCeEEEEEEHHHHHHhh
Confidence 45789999999999999999999999999 468999999999998875
No 204
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.77 E-value=5.1e-05 Score=61.41 Aligned_cols=56 Identities=29% Similarity=0.561 Sum_probs=46.3
Q ss_pred eEEEEEecC---CCceEEEEeccC---CCCC--CCCCCcCCC--CCCeEEEEEEcCCc-eEEEEEEE
Q 011558 21 VPVRFIWPN---GGRRVSLSGSFT---RWSE--PMPMSPSEG--CPAVFQIICRLPPG-HHQYKFYV 76 (483)
Q Consensus 21 ~~~~f~~~~---~~~~V~l~Gsf~---~W~~--~~~m~~~~~--~~~~~~~~~~l~~g-~~~ykf~v 76 (483)
+.|+|...+ .++.|+|+|+.. +|++ .++|...+. ....|++++.||.| .++|||++
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 678888743 488999999998 8997 568887642 36899999999998 69999999
No 205
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.74 E-value=7.3e-05 Score=62.38 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=45.4
Q ss_pred cCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 428 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 428 ~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
+|.+++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+||..||.+
T Consensus 63 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd-~~~~l~Givt~~dl~~ 112 (113)
T cd04597 63 VINRKPVTARPNDPLREALNLMHEHNIRTLPVVD-DDGTPAGIITLLDLAE 112 (113)
T ss_pred hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHhhc
Confidence 5666788999999999999999999999999999 4799999999999864
No 206
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.74 E-value=9.2e-05 Score=60.40 Aligned_cols=64 Identities=20% Similarity=0.246 Sum_probs=48.1
Q ss_pred EEE-EecCCCceEEEEeccCCCC-----CCCCCCcCCCCCCeEEEEEE-cCCceEEEEEEEcCe-----eeeCCCCCeee
Q 011558 23 VRF-IWPNGGRRVSLSGSFTRWS-----EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-----WRHDENQPHVS 90 (483)
Q Consensus 23 ~~f-~~~~~~~~V~l~Gsf~~W~-----~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~-----w~~d~~~~~~~ 90 (483)
++| +|...|++|.|.. |++|. ..++|.+.+ +|+|++.++ +.+|. .|+|.|+|. ...||....+.
T Consensus 10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~--~gvw~~~v~~~~~g~-~Y~y~i~~~~~~~~~~~DPyA~~~~ 85 (100)
T cd02860 10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGE--NGVWSVTLDGDLEGY-YYLYEVKVYKGETNEVVDPYAKALS 85 (100)
T ss_pred EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCC--CCEEEEEeCCccCCc-EEEEEEEEeceEEEEEcCcccEeEe
Confidence 567 5677799999998 88886 346888754 899999887 44454 488888876 67888666555
No 207
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.71 E-value=6.4e-05 Score=77.65 Aligned_cols=141 Identities=15% Similarity=0.225 Sum_probs=103.3
Q ss_pred CCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhh-cc-CCCC--CCccc---
Q 011558 255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH-FK-HSSS--SLPIL--- 327 (483)
Q Consensus 255 ~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~-~~-~~~~--~~~~~--- 327 (483)
.+++++++++..-+.+...++.+.....+.+||+|+...+ ....+.|+|-.+.++..+.+. +. +... ..+..
T Consensus 586 ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~-~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~ 664 (762)
T KOG0474|consen 586 EVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSN-EAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKF 664 (762)
T ss_pred hhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCc-cchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcC
Confidence 4678899999999999999999999999999999763321 123789999999988877432 11 1000 00000
Q ss_pred --------ccccccccccccc----cccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 328 --------QQPVSSIQLGTWV----PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 328 --------~~~v~~l~i~~~~----~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
..+++++.+.... .....+|.+.+.++.+++++..++.++++-+.+++.||++..+.+|++|++|+..
T Consensus 665 ~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~ 744 (762)
T KOG0474|consen 665 TFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLAR 744 (762)
T ss_pred CHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhh
Confidence 1123333222111 1234578888999999999999999999999999999999889999999999986
Q ss_pred H
Q 011558 396 L 396 (483)
Q Consensus 396 l 396 (483)
.
T Consensus 745 ~ 745 (762)
T KOG0474|consen 745 Y 745 (762)
T ss_pred H
Confidence 3
No 208
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.58 E-value=0.00024 Score=48.27 Aligned_cols=47 Identities=30% Similarity=0.537 Sum_probs=42.2
Q ss_pred eeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 011558 351 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 397 (483)
Q Consensus 351 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~ 397 (483)
+.++.+++++.++++.|.+.+.+.+||++++++++|+++..++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 45788999999999999999999999999889999999999997643
No 209
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.55 E-value=0.00047 Score=55.25 Aligned_cols=53 Identities=25% Similarity=0.415 Sum_probs=42.9
Q ss_pred eEEEEEecCC---CceEEEEeccC---CCCCCCCCCcCCCCCCeEEEEEEcCCc-eEEEEEEE
Q 011558 21 VPVRFIWPNG---GRRVSLSGSFT---RWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (483)
Q Consensus 21 ~~~~f~~~~~---~~~V~l~Gsf~---~W~~~~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v 76 (483)
+.++|...+. |.+++|+|+-. +|++..+|... .+.|++.+.+|+| .++|||++
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~---~~~W~~~~~l~~~~~ieyKy~~ 61 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWT---ENGWVCDLELDGGELVEYKFVI 61 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccC---CCCEEEEEEeCCCCcEEEEEEE
Confidence 5667776553 88999999875 89987788765 3569999999998 69999998
No 210
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.53 E-value=0.00085 Score=54.97 Aligned_cols=64 Identities=30% Similarity=0.587 Sum_probs=48.1
Q ss_pred ceEEEEEecC-----CCceEEEEeccC---CCCCCC-----CCCcCCCCCCeEEEEEEcCCc-eEEEEEEE---cCe--e
Q 011558 20 LVPVRFIWPN-----GGRRVSLSGSFT---RWSEPM-----PMSPSEGCPAVFQIICRLPPG-HHQYKFYV---DGE--W 80 (483)
Q Consensus 20 ~~~~~f~~~~-----~~~~V~l~Gsf~---~W~~~~-----~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v---dg~--w 80 (483)
.+||+|+... .|.+++|+|+-. +|++.. +|.... ...|++++.||.| ..+|||++ ||. |
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~--~~~W~~~~~lp~~~~veyK~v~~~~~g~v~W 79 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPN--WPDWFVVASVPAGTYIEFKFLKAPADGTGTW 79 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCC--CCCEEEEEEcCCCCcEEEEEEEECCCCCEEE
Confidence 4899999853 378999999876 899732 665433 5679999999998 59999998 443 6
Q ss_pred eeCCC
Q 011558 81 RHDEN 85 (483)
Q Consensus 81 ~~d~~ 85 (483)
...++
T Consensus 80 E~g~N 84 (103)
T cd05820 80 EGGSN 84 (103)
T ss_pred EeCCC
Confidence 54443
No 211
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.47 E-value=0.00089 Score=54.45 Aligned_cols=57 Identities=23% Similarity=0.410 Sum_probs=43.2
Q ss_pred ceEEEEEecC----CCceEEEEe---ccCCCCCCC-CCCcCC-CCCCeEEEEEEcCCc-eEEEEEEE
Q 011558 20 LVPVRFIWPN----GGRRVSLSG---SFTRWSEPM-PMSPSE-GCPAVFQIICRLPPG-HHQYKFYV 76 (483)
Q Consensus 20 ~~~~~f~~~~----~~~~V~l~G---sf~~W~~~~-~m~~~~-~~~~~~~~~~~l~~g-~~~ykf~v 76 (483)
.|||+|.... .|.+|+|+| ++.+|++.. +|.... ...+.|++++.||+| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~ 68 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK 68 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 4899999743 378999999 677998742 343322 225789999999998 59999999
No 212
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.46 E-value=0.00022 Score=75.63 Aligned_cols=66 Identities=32% Similarity=0.665 Sum_probs=50.1
Q ss_pred eEEEEE-ecCCCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEE-cCCceEEEEEEEcCe-----eeeCCCCCe
Q 011558 21 VPVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-----WRHDENQPH 88 (483)
Q Consensus 21 ~~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~-----w~~d~~~~~ 88 (483)
-.++|+ |...++.|.|.|+||+|+.. .+|.... ..|+|+++++ +++| ++|||.+++. |+.||..-.
T Consensus 36 ~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~-~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~~ 109 (628)
T COG0296 36 SGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRK-ESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYARR 109 (628)
T ss_pred CceEEEEECCCCCeEEEEeecCCccceecccccCC-CCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhhc
Confidence 356675 67789999999999999973 3555433 3799999999 9999 9999999654 256654433
No 213
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.46 E-value=0.00079 Score=55.31 Aligned_cols=64 Identities=25% Similarity=0.464 Sum_probs=42.1
Q ss_pred ecCCCceEEEEeccCCCCC-CCCCCcCCCCCCeEEEEEE-cCCc-eEEEEEEEc-Ce--eeeCCCCCeeeC
Q 011558 27 WPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICR-LPPG-HHQYKFYVD-GE--WRHDENQPHVSG 91 (483)
Q Consensus 27 ~~~~~~~V~l~Gsf~~W~~-~~~m~~~~~~~~~~~~~~~-l~~g-~~~ykf~vd-g~--w~~d~~~~~~~~ 91 (483)
|..+|++|.|.++|++|.. ..+|.+.+. .|.|.+.++ +++| .|+|++..+ |. .+.||....++.
T Consensus 28 ~aP~A~~V~l~~~~~~~~~~~~~m~~~~~-~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~~~~~ 97 (106)
T cd02855 28 WAPNARRVSVVGDFNGWDGRRHPMRRRGD-SGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAFYSEL 97 (106)
T ss_pred ECCCCCEEEEEEECCCCCCcceecEECCC-CCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCceeeEe
Confidence 6667999999999999965 358887543 799998886 5556 444444433 33 344554444443
No 214
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.001 Score=69.13 Aligned_cols=127 Identities=17% Similarity=0.234 Sum_probs=87.9
Q ss_pred eeEecCC-CCHHHHHHHHHhCCCCEEEEEc--CCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCC----CCC
Q 011558 351 FAMLRPT-ASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ----DAN 423 (483)
Q Consensus 351 ~~~v~~~-~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~----~~~ 423 (483)
..++..+ .++.+...+|.+..++.+||+- +..+++|++.++|+...+..-..........+. ...+... ...
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~-~f~~~~~~~~~~~~ 636 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI-YFNDPSPSAVAGIP 636 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc-ccCCCCccccCCCC
Confidence 5555554 8999999999999999999884 356899999999987643311000000000111 0000000 001
Q ss_pred CCc---ccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558 424 PSL---GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 480 (483)
Q Consensus 424 ~~~---~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l 480 (483)
.+. .+|...++++....+...+++++.+-+.+.+.|.. +|++.|+||..|++++.
T Consensus 637 ~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 637 SRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRHT 694 (696)
T ss_pred CCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHhh
Confidence 122 26777889999999999999999999998887776 79999999999999875
No 215
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.38 E-value=0.00086 Score=56.61 Aligned_cols=55 Identities=25% Similarity=0.539 Sum_probs=43.1
Q ss_pred EEEEecC----CCceEEEEec---cCCCCCC--CCCCcCCCCCCeEEEEEEcCCc-eEEEEEEEc
Q 011558 23 VRFIWPN----GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYVD 77 (483)
Q Consensus 23 ~~f~~~~----~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~vd 77 (483)
++|...+ .++.|+|+|+ +.+|++. .+|.......+.|++.+.||++ .++|||++.
T Consensus 3 v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~ 67 (120)
T cd05814 3 VTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVA 67 (120)
T ss_pred EEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEE
Confidence 4555544 4889999999 8899853 5887762226789999999998 799999994
No 216
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.36 E-value=0.00064 Score=55.72 Aligned_cols=54 Identities=20% Similarity=0.442 Sum_probs=40.8
Q ss_pred EEE-EecCCCceEEEEeccCCCC--CCCCCCcCCCCCCeEEEEEE-cCCceEEEEEEEcCee
Q 011558 23 VRF-IWPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW 80 (483)
Q Consensus 23 ~~f-~~~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~w 80 (483)
++| +|...|++|.|.. |++|. ..++|.+.+ +|+|.+.++ +.+|. .|+|.|||.|
T Consensus 11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~--~GvW~~~v~~~~~g~-~Y~y~i~g~~ 68 (103)
T cd02856 11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEEY--GGVWHGFLPGIKAGQ-RYGFRVHGPY 68 (103)
T ss_pred eEEEEECCCCCEEEEEE-EeCCCCEEEEEccccc--CCEEEEEECCCCCCC-EEEEEECCcc
Confidence 456 5676799999999 77665 235887765 799999985 55554 7999999943
No 217
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.18 E-value=0.00086 Score=73.10 Aligned_cols=63 Identities=24% Similarity=0.439 Sum_probs=46.1
Q ss_pred EEE-EecCCCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEEc-------CCceEEEEEEEc---Ce--eeeCCCCCe
Q 011558 23 VRF-IWPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL-------PPGHHQYKFYVD---GE--WRHDENQPH 88 (483)
Q Consensus 23 ~~f-~~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~l-------~~g~~~ykf~vd---g~--w~~d~~~~~ 88 (483)
++| .|.+.|++|+|.|+||+|+.. .+|.+.+ .|+|++.++- +.| ..|||.|. |. ++.||-...
T Consensus 116 ~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~--~GvWe~~ip~~~g~~~~~~G-~~Yky~i~~~~g~~~~r~dpya~~ 192 (758)
T PLN02447 116 ITYREWAPGAKAAALIGDFNNWNPNAHWMTKNE--FGVWEIFLPDADGSPAIPHG-SRVKIRMETPDGRWVDRIPAWIKY 192 (758)
T ss_pred EEEEEECCCCCEEEEEEecCCCCCCccCceeCC--CCEEEEEECCccccccCCCC-CEEEEEEEeCCCcEEeecCchHhe
Confidence 445 477789999999999999874 5998866 7999998874 334 36777773 54 467774443
No 218
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=97.12 E-value=0.0031 Score=51.93 Aligned_cols=59 Identities=25% Similarity=0.502 Sum_probs=44.5
Q ss_pred CcceEEEEEecC---CCceEEEEeccC---CCCCC--CCCCcCC--CCCCeEEEEEEcCCc-eEEEEEEE
Q 011558 18 SILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE--GCPAVFQIICRLPPG-HHQYKFYV 76 (483)
Q Consensus 18 ~~~~~~~f~~~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~--~~~~~~~~~~~l~~g-~~~ykf~v 76 (483)
+..++|+|...+ .|..|+|+|+-. +|++. .+|.... ...+.|++.+.||++ .++|||++
T Consensus 4 ~~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~ 73 (106)
T cd05811 4 ATTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR 73 (106)
T ss_pred CCEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence 345778887754 388999999866 79863 5776532 124789999999998 59999997
No 219
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.11 E-value=0.0012 Score=71.89 Aligned_cols=65 Identities=26% Similarity=0.582 Sum_probs=48.1
Q ss_pred EEEE-EecCCCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEE-cCCceEEEEEEE---cCeee--eCCCCCee
Q 011558 22 PVRF-IWPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYV---DGEWR--HDENQPHV 89 (483)
Q Consensus 22 ~~~f-~~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~v---dg~w~--~d~~~~~~ 89 (483)
-|+| +|...|++|+|+|+||+|+.. .||.+.. .|+|++.++ +.+| ..|||.| ||.|. .||-....
T Consensus 139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~--~GVWelfipg~~~G-~~YKYeI~~~~G~~~~k~DPYA~~~ 211 (730)
T PRK12568 139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRI--GGFWELFLPRVEAG-ARYKYAITAADGRVLLKADPVARQT 211 (730)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCccceecccCC--CCEEEEEECCCCCC-CEEEEEEEcCCCeEeecCCCcceEe
Confidence 4677 456679999999999999864 5898753 899999985 5666 4677777 78764 67755443
No 220
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.0086 Score=62.50 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=94.1
Q ss_pred CeEEeCCC-CCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCC---CCCccccccccccc
Q 011558 260 PLVQAGPY-DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS---SSLPILQQPVSSIQ 335 (483)
Q Consensus 260 ~~v~v~~~-~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~---~~~~~~~~~v~~l~ 335 (483)
++..+..+ +++.|...+|.+...+..||+-+ .+.. .++|++..+++...+........ .....++.+..+..
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~-~~sq---~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~ 632 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLS-EDSQ---RLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAV 632 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEc-cccc---eeEEEEchHHHHHHHhhhccccccceecccccCCCCcccc
Confidence 46666555 89999999999999999999843 2233 89999999998877642211100 00001222222221
Q ss_pred ccc-cccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558 336 LGT-WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 398 (483)
Q Consensus 336 i~~-~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~ 398 (483)
-+. .....+++|...+.++...++.+-+++++++-+.+.+.|. ++|++.|+||.+|+++..+
T Consensus 633 ~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~r 695 (696)
T KOG0475|consen 633 AGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHTR 695 (696)
T ss_pred CCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhhc
Confidence 111 1124567788889999999999999999999999988776 5899999999999987543
No 221
>PRK12313 glycogen branching enzyme; Provisional
Probab=96.97 E-value=0.0019 Score=70.44 Aligned_cols=67 Identities=22% Similarity=0.365 Sum_probs=47.5
Q ss_pred EEEEE-ecCCCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEE-cCCc-eEEEEEEE-cCee--eeCCCCCeee
Q 011558 22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPG-HHQYKFYV-DGEW--RHDENQPHVS 90 (483)
Q Consensus 22 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-l~~g-~~~ykf~v-dg~w--~~d~~~~~~~ 90 (483)
.|+|+ |...|++|+|+|+||+|++. .+|.+.. .|+|++.++ +.+| .|+|++.. +|.| +.||......
T Consensus 39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~--~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~~~ 112 (633)
T PRK12313 39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRE--SGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFYFE 112 (633)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCcccccccccC--CCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEEEe
Confidence 46664 45569999999999999874 5888764 799999988 4444 56666644 5665 4555444443
No 222
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.95 E-value=0.0049 Score=50.27 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=42.5
Q ss_pred ceEEEEEec-C---CCceEEEEeccC---CCCCCC--CCCcC--CCCCCeEEEEEEcCCc-eEEEEEEE
Q 011558 20 LVPVRFIWP-N---GGRRVSLSGSFT---RWSEPM--PMSPS--EGCPAVFQIICRLPPG-HHQYKFYV 76 (483)
Q Consensus 20 ~~~~~f~~~-~---~~~~V~l~Gsf~---~W~~~~--~m~~~--~~~~~~~~~~~~l~~g-~~~ykf~v 76 (483)
.++++|... . .|.+|+|+|+-. +|++.. .|... ......|++.++||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~ 70 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK 70 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 478899874 2 388999999876 898643 23211 1235679999999998 69999998
No 223
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.94 E-value=0.0027 Score=51.12 Aligned_cols=54 Identities=20% Similarity=0.409 Sum_probs=42.1
Q ss_pred eEEEEEecC----CCceEEEEeccC---CCCCCCCCCcCCCCCCeEEEEEEcCCce-EEEEEEE
Q 011558 21 VPVRFIWPN----GGRRVSLSGSFT---RWSEPMPMSPSEGCPAVFQIICRLPPGH-HQYKFYV 76 (483)
Q Consensus 21 ~~~~f~~~~----~~~~V~l~Gsf~---~W~~~~~m~~~~~~~~~~~~~~~l~~g~-~~ykf~v 76 (483)
|+|+|...+ ++..++|+|+=. +|+...+|.... .+.|++.+.||++. ++|||++
T Consensus 1 v~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~~--~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 1 VNVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYVK--DGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred CeEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCCC--CCCEEEEEEecCCCcEEEEEEE
Confidence 356666533 457788999765 799878997654 57899999999984 9999998
No 224
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.83 E-value=0.0032 Score=66.74 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=54.0
Q ss_pred cccccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHh
Q 011558 337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAK 398 (483)
Q Consensus 337 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGiit~~di~~l~~ 398 (483)
+.+...|.++|.+++.++..+++..|..+.+....++.+|+||+ +..++|.|.++.|..++.
T Consensus 584 ~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~ 647 (931)
T KOG0476|consen 584 SVHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQ 647 (931)
T ss_pred ceeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHH
Confidence 44556789999999999999999999999888777999999985 457999999999988765
No 225
>PRK14705 glycogen branching enzyme; Provisional
Probab=96.76 E-value=0.0025 Score=73.01 Aligned_cols=62 Identities=26% Similarity=0.596 Sum_probs=45.5
Q ss_pred EEEEE-ecCCCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEE-cCCceEEEEEEEc---Cee--eeCCC
Q 011558 22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD---GEW--RHDEN 85 (483)
Q Consensus 22 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vd---g~w--~~d~~ 85 (483)
-|+|. |...|++|+|+|+||+|+.. .+|.+.. ..|+|++.++ +.+|. .|||.|. |.| +.||.
T Consensus 639 Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~-~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPy 708 (1224)
T PRK14705 639 GVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLG-SSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPL 708 (1224)
T ss_pred eEEEEEECCCCCEEEEEEEecCCCCCcccceECC-CCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCcc
Confidence 45664 67779999999999999864 5887743 3699999886 67775 6888884 555 45553
No 226
>PRK14706 glycogen branching enzyme; Provisional
Probab=96.74 E-value=0.0034 Score=68.04 Aligned_cols=65 Identities=31% Similarity=0.613 Sum_probs=47.6
Q ss_pred EEEE-EecCCCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEEc-CCceEEEEEEEcC---ee--eeCCCCCee
Q 011558 22 PVRF-IWPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL-PPGHHQYKFYVDG---EW--RHDENQPHV 89 (483)
Q Consensus 22 ~~~f-~~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~l-~~g~~~ykf~vdg---~w--~~d~~~~~~ 89 (483)
-++| +|...|++|.|+|+||+|+.. .||.+.+ .|+|++.++- .+| ..|||.|++ .+ +.||.....
T Consensus 39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~--~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~~ 111 (639)
T PRK14706 39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLD--FGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSFF 111 (639)
T ss_pred cEEEEEECCCCCEEEEEEecCCcccccccccccC--CCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEEE
Confidence 3566 456679999999999999864 5898875 6999998864 444 478888854 43 666655443
No 227
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.74 E-value=0.0048 Score=51.96 Aligned_cols=60 Identities=25% Similarity=0.518 Sum_probs=43.3
Q ss_pred EEE-EecCCCceEEEEeccCCCC---C--CCCCCcCC-CCCCeEEEEEE-cCCceEEEEEEEcCeeeeCC
Q 011558 23 VRF-IWPNGGRRVSLSGSFTRWS---E--PMPMSPSE-GCPAVFQIICR-LPPGHHQYKFYVDGEWRHDE 84 (483)
Q Consensus 23 ~~f-~~~~~~~~V~l~Gsf~~W~---~--~~~m~~~~-~~~~~~~~~~~-l~~g~~~ykf~vdg~w~~d~ 84 (483)
++| .|...|++|.|+. |++|+ + .++|.+.+ +..|+|.+.++ +.+|. .|+|.|+|.|..++
T Consensus 9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p~~ 76 (119)
T cd02852 9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEPEQ 76 (119)
T ss_pred EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCCCCc
Confidence 556 5677799999999 99886 2 24676543 23699998876 55675 79999999765443
No 228
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.73 E-value=0.014 Score=47.36 Aligned_cols=45 Identities=18% Similarity=0.426 Sum_probs=37.1
Q ss_pred CCceEEEEeccC---CCCCC--CCCCcCCCCCCeEEEEEEcCCc--eEEEEEEE
Q 011558 30 GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPG--HHQYKFYV 76 (483)
Q Consensus 30 ~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~l~~g--~~~ykf~v 76 (483)
.+.+++|+|+-. +|++. .+|.... ...|++.+.+|++ .++|||++
T Consensus 13 ~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~--~~~W~~~v~~p~~~~~ieYKyvi 64 (99)
T cd05816 13 KGQSVYVTGSSPELGNWDPQKALKLSDVG--FPIWEADIDISKDSFPFEYKYII 64 (99)
T ss_pred CCCEEEEEEChHHhCCCCccccccCCCCC--CCcEEEEEEeCCCCccEEEEEEE
Confidence 488999999864 89863 5887765 6789999999986 58999998
No 229
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.71 E-value=0.0065 Score=61.83 Aligned_cols=107 Identities=14% Similarity=0.161 Sum_probs=72.5
Q ss_pred ccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558 342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 421 (483)
Q Consensus 342 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~ 421 (483)
++.++|.+.......+.+ .+++. ++.+.+.|+|+ |+++..+...+..... ..++.+ +
T Consensus 275 ~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~-~----- 331 (382)
T TIGR03415 275 TARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQAWAA-------EQEVES-L----- 331 (382)
T ss_pred eHHHHhcccccccccCcc--hhhhh---cccceeEeecc-----ceecccchHhHhhccc-------ccchhh-h-----
Confidence 445668443333333322 44443 78889999985 8888777655443111 112222 1
Q ss_pred CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558 422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 482 (483)
Q Consensus 422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~ 482 (483)
.....++++++++.+++..+.+.+.. ++|+| + |+++|+|+..+++.+|.+
T Consensus 332 --------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 332 --------EAAPTVINPDTLMRDVLAARHRTGGA-ILLVE-N-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred --------cccCcccCCCCcHHHHHHHHhcCCCC-eEEee-C-CeEEEEEeHHHHHHHHhc
Confidence 12466889999999999999988864 88998 4 999999999999999864
No 230
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.68 E-value=0.0085 Score=48.77 Aligned_cols=45 Identities=24% Similarity=0.498 Sum_probs=37.3
Q ss_pred CCceEEEEec---cCCCCCC--CCCCcCCCCCCeEEEEEEcCCc-eEEEEEEE
Q 011558 30 GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (483)
Q Consensus 30 ~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v 76 (483)
.|..++|+|+ .-+|++. .+|.... ...|++++.+|+| .++|||++
T Consensus 12 ~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~--~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 12 FGEAVYISGNCNQLGNWNPSKAKRMQWNE--GDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCCEEEEEeCcHHHCCCCccccCcccCCC--CCCEEEEEEECCCCcEEEEEEE
Confidence 4789999999 5589964 5787655 5789999999987 59999998
No 231
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.62 E-value=0.016 Score=46.88 Aligned_cols=54 Identities=22% Similarity=0.407 Sum_probs=41.9
Q ss_pred eEEEEEec----CCCceEEEEeccC---CCCCC--CCCCcCCCCCCeEEEEEEcCCc-eEEEEEEE
Q 011558 21 VPVRFIWP----NGGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV 76 (483)
Q Consensus 21 ~~~~f~~~----~~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~v 76 (483)
|+|+|.-. ..+..++|+|+-. +|++. ++|.... ...|++.+.||.| ..+|||++
T Consensus 1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~--~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPTA--YPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCCC--CCeEEEEEEcCCCCeEEEEEEE
Confidence 46777732 2478899999877 89963 4776543 6789999999998 69999988
No 232
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.59 E-value=0.0077 Score=48.45 Aligned_cols=47 Identities=23% Similarity=0.467 Sum_probs=38.1
Q ss_pred CCCceEEEEeccC---CCCC--CCCCCcCCCCCCeEEEEEEcCC--c-eEEEEEEE
Q 011558 29 NGGRRVSLSGSFT---RWSE--PMPMSPSEGCPAVFQIICRLPP--G-HHQYKFYV 76 (483)
Q Consensus 29 ~~~~~V~l~Gsf~---~W~~--~~~m~~~~~~~~~~~~~~~l~~--g-~~~ykf~v 76 (483)
..|..++|+|+.. +|++ .++|...+ ..+.|++.+.+|+ | .++|||++
T Consensus 11 ~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~-~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 11 QFGQSVYVVGSHPELGNWDPAKALRLNTSN-SYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred CCCCEEEEEeCcHHhCCcChhcCccccCCC-CCCcEEEEEEecCCCCCeEEEEEEE
Confidence 3488999999987 8985 35787654 2578999999999 7 69999998
No 233
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.53 E-value=0.0059 Score=67.64 Aligned_cols=65 Identities=28% Similarity=0.470 Sum_probs=45.2
Q ss_pred EEEEEe-cCCCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEE-cCCc-eEEEEEEEc-Cee--eeCCCCC
Q 011558 22 PVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPG-HHQYKFYVD-GEW--RHDENQP 87 (483)
Q Consensus 22 ~~~f~~-~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-l~~g-~~~ykf~vd-g~w--~~d~~~~ 87 (483)
.|+|+. ...|++|+|+|+||+|+.. .+|.+.. ..|.|++.++ +++| .|+|++..+ |.| ..||-.-
T Consensus 132 gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~-~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa~ 203 (726)
T PRK05402 132 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRG-ESGVWELFIPGLGEGELYKFEILTADGELLLKADPYAF 203 (726)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCCccccceEcC-CCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCceE
Confidence 456655 5569999999999999864 5898762 2799998886 5666 566666654 454 4444333
No 234
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.48 E-value=0.0046 Score=59.79 Aligned_cols=154 Identities=19% Similarity=0.226 Sum_probs=102.1
Q ss_pred CHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHH-----HHhhccCCCCCCccccccccccccccccccc
Q 011558 269 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC-----ICRHFKHSSSSLPILQQPVSSIQLGTWVPRI 343 (483)
Q Consensus 269 sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~-----l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v 343 (483)
.|.||+++ -+++.+.. +| +++-+=|..+|+.. +..+.+. +.. ...-++
T Consensus 224 DLdEAlri-----G~rIaimk----dG---~ivQ~Gtp~eIl~~PAndYV~~Fv~~--------------v~~-~~VltA 276 (386)
T COG4175 224 DLDEALRI-----GDRIAIMK----DG---EIVQVGTPEEILLNPANDYVRDFVRN--------------VDR-SRVLTA 276 (386)
T ss_pred CHHHHHhc-----cceEEEec----CC---eEEEeCCHHHHHcCccHHHHHHHHhc--------------CCh-hheeeH
Confidence 46666553 14566663 46 78888899888752 2222111 100 001134
Q ss_pred ccccCC--CeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcCCC
Q 011558 344 GEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 421 (483)
Q Consensus 344 ~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~~~ 421 (483)
.++|.+ ....-.+...-..++..+.....+.+.+++..++.+|+++..++....
T Consensus 277 ~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~------------------------ 332 (386)
T COG4175 277 KDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKAA------------------------ 332 (386)
T ss_pred HHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhccc------------------------
Confidence 556763 222222222334677888887777777888777899999998876530
Q ss_pred CCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHHHhc
Q 011558 422 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 482 (483)
Q Consensus 422 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~l~~ 482 (483)
+..++.++..++++.+.+..+.+.... ++||| ++++++|+|++..++.+|.+
T Consensus 333 -------~~~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvd-e~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 333 -------LIDDVLTVDADTPLSEILARIRQAPCP-VAVVD-EDGRYVGIISRGELLEALAR 384 (386)
T ss_pred -------ccccccccCccchHHHHHHHHhcCCCc-eeEEc-CCCcEEEEecHHHHHHHHhc
Confidence 011466788999999999999888874 88999 68999999999999999875
No 235
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.41 E-value=0.01 Score=46.64 Aligned_cols=62 Identities=23% Similarity=0.359 Sum_probs=44.6
Q ss_pred EEEE-ecCCCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEEEEEc-CeeeeCCCCCeee
Q 011558 23 VRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD-GEWRHDENQPHVS 90 (483)
Q Consensus 23 ~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vd-g~w~~d~~~~~~~ 90 (483)
++|. |...|++|.|.... |. ..+|.+.+ +|+|++.+.--+|. .|+|.|+ +..+.||......
T Consensus 10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~~--~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~~ 73 (85)
T cd02853 10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRDG--DGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQP 73 (85)
T ss_pred EEEEEeCCCCCEEEEEecC--CC-cccCccCC--CcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccCC
Confidence 4554 67679999999743 54 47898765 89999998744665 5777776 4588888776543
No 236
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.25 E-value=0.008 Score=64.20 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=52.4
Q ss_pred EEE-EecCCCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEE-cCCceEEEEEEEcC-eeeeCCCCCeeeCCCCCeeeE
Q 011558 23 VRF-IWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDG-EWRHDENQPHVSGNYGVVNCV 99 (483)
Q Consensus 23 ~~f-~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg-~w~~d~~~~~~~~~~g~~nn~ 99 (483)
|+| .|...|++|.|.+. +. ..+|.+.+ +|+|+++++ +.+| +.|+|.||| ..+.||.......+. +-.++
T Consensus 1 v~FrlwAP~A~~V~L~l~---~~-~~~m~k~~--~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~~~~-~~~S~ 72 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---GA-LHAMQRLG--DGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQPDGV-HGPSQ 72 (542)
T ss_pred CEEEEECCCCCEEEEEeC---CC-EEeCeECC--CCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccccCC-CCCeE
Confidence 356 47778999999973 33 47998876 799999987 6677 789999999 678888777654331 22355
Q ss_pred EEe
Q 011558 100 YIA 102 (483)
Q Consensus 100 ~~v 102 (483)
+..
T Consensus 73 V~d 75 (542)
T TIGR02402 73 VVD 75 (542)
T ss_pred Eec
Confidence 543
No 237
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=96.04 E-value=0.091 Score=43.48 Aligned_cols=51 Identities=22% Similarity=0.415 Sum_probs=38.5
Q ss_pred EecCCCceEEEEeccC---CCCCC--CCCCcCC-----CCCCeEEEEEEcCCc----eEEEEEEE
Q 011558 26 IWPNGGRRVSLSGSFT---RWSEP--MPMSPSE-----GCPAVFQIICRLPPG----HHQYKFYV 76 (483)
Q Consensus 26 ~~~~~~~~V~l~Gsf~---~W~~~--~~m~~~~-----~~~~~~~~~~~l~~g----~~~ykf~v 76 (483)
+.-..+.+++|+|+=. +|++. .+|.... ..+..|+++++||+| .++|||+.
T Consensus 10 ~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 10 TFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred eecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 4455788999999755 89864 4676541 124579999999996 69999998
No 238
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.86 E-value=0.018 Score=45.46 Aligned_cols=61 Identities=23% Similarity=0.480 Sum_probs=37.5
Q ss_pred EEEEEecC------CCceEEEEeccCCCCCC--CCCCcCC--CCCCeEEEEEEcCCceEEEEEEE-cC--eeee
Q 011558 22 PVRFIWPN------GGRRVSLSGSFTRWSEP--MPMSPSE--GCPAVFQIICRLPPGHHQYKFYV-DG--EWRH 82 (483)
Q Consensus 22 ~~~f~~~~------~~~~V~l~Gsf~~W~~~--~~m~~~~--~~~~~~~~~~~l~~g~~~ykf~v-dg--~w~~ 82 (483)
+|++.|.. ++.+|++.+.|++|+.. .+|.+.. ...+.|++++.+|..-|+..|+. || .|-.
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~wDN 76 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNWDN 76 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-SSS-EES
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCCCCcEeC
Confidence 46666633 36789999999999864 3565542 12689999999999988999988 65 4643
No 239
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.76 E-value=0.015 Score=64.39 Aligned_cols=60 Identities=12% Similarity=0.040 Sum_probs=43.1
Q ss_pred EEEE-EecCCCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEEEEE--cCe--eeeCC
Q 011558 22 PVRF-IWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYV--DGE--WRHDE 84 (483)
Q Consensus 22 ~~~f-~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~v--dg~--w~~d~ 84 (483)
-++| +|.+.|++|+|+|+||+ ....||.+.+. .|.|++.+++..|.. |||.| ||+ .+.||
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~~-~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DP 93 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERLHP-RGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDP 93 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEcCC-CceEEEEecCCCCCC-eEEEEEeCCceeEeccc
Confidence 3444 57888999999999997 33468987533 699999999766732 55555 786 45555
No 240
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=95.40 E-value=0.06 Score=58.54 Aligned_cols=65 Identities=25% Similarity=0.511 Sum_probs=46.0
Q ss_pred EEEE-ecCCCceEEEEeccCCCCCC-CCCCcCCCCCCeEEEEEEc-CCceEEEEEEEc---Ce--eeeCCCCCee
Q 011558 23 VRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL-PPGHHQYKFYVD---GE--WRHDENQPHV 89 (483)
Q Consensus 23 ~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~l-~~g~~~ykf~vd---g~--w~~d~~~~~~ 89 (483)
++|+ |.+.|++|.|+|+||+|... .+|.+.+ ..|+|++.++- .+|. .|||.|+ |. ++.||.....
T Consensus 30 ~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~-~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~~~ 102 (613)
T TIGR01515 30 TRFCVWAPNAREVRVAGDFNYWDGREHPMRRRN-DNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAFYA 102 (613)
T ss_pred EEEEEECCCCCEEEEEEecCCCCCceecceEec-CCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEeee
Confidence 4554 56679999999999999764 4887653 26999988863 4554 5888884 55 4677755433
No 241
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=95.03 E-value=0.083 Score=42.95 Aligned_cols=46 Identities=30% Similarity=0.657 Sum_probs=35.7
Q ss_pred CceEEEEeccC---CCCCC--CCCCcCC-CCCCeEEEEEEcCCc-eEEEEEEE
Q 011558 31 GRRVSLSGSFT---RWSEP--MPMSPSE-GCPAVFQIICRLPPG-HHQYKFYV 76 (483)
Q Consensus 31 ~~~V~l~Gsf~---~W~~~--~~m~~~~-~~~~~~~~~~~l~~g-~~~ykf~v 76 (483)
|++++|+|+-. +|++. .+|.... .....|++.+.+|++ .++|||++
T Consensus 13 Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 13 GQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred CCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 88999999875 79764 5786432 223489999999997 59999999
No 242
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.15 E-value=0.39 Score=45.51 Aligned_cols=113 Identities=15% Similarity=0.220 Sum_probs=70.9
Q ss_pred CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccc--------cc-cccCCccHHHHHhcC
Q 011558 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY--------AQ-IHLDEMNIHQALQLG 419 (483)
Q Consensus 349 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~--------~~-~~l~~~~v~~~l~~~ 419 (483)
+.++.|+.+ +.||+++- ..+.|.+ +|+++-+-+..+|+.--++... .. -.+....+.+.....
T Consensus 187 kTivfVTHD--idEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~ 258 (309)
T COG1125 187 KTIVFVTHD--IDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG 258 (309)
T ss_pred CEEEEEecC--HHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence 456677766 78998875 4688998 7999999998888763221110 00 011122333322211
Q ss_pred CCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 011558 420 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 479 (483)
Q Consensus 420 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~~ 479 (483)
. +. . --.........+++..+...+...+|||| ++|+++|+||+.+++..
T Consensus 259 ~----~~--~---~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd-~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 259 E----PA--D---GEPLLEGFVDRDALSDFLARGRSVLPVVD-EDGRPLGTVTRADLLDE 308 (309)
T ss_pred c----cc--c---CCccccchhhHHHHHHHHhcCCceeEEEC-CCCcEeeEEEHHHHhhh
Confidence 1 00 0 01123344455588888889999999999 68999999999999875
No 243
>PLN02316 synthase/transferase
Probab=94.05 E-value=0.23 Score=56.44 Aligned_cols=61 Identities=13% Similarity=0.249 Sum_probs=46.0
Q ss_pred cceEEEEEecC------CCceEEEEeccCCCCCCC----CCCcCC-CCCCeEEEEEEcCCceEEEEEEE-cCe
Q 011558 19 ILVPVRFIWPN------GGRRVSLSGSFTRWSEPM----PMSPSE-GCPAVFQIICRLPPGHHQYKFYV-DGE 79 (483)
Q Consensus 19 ~~~~~~f~~~~------~~~~V~l~Gsf~~W~~~~----~m~~~~-~~~~~~~~~~~l~~g~~~ykf~v-dg~ 79 (483)
..-++++.|+. ++.+|++.|.||+|.... .|.+.+ ..+++|.+++.+|+.-|-.-|+. ||.
T Consensus 327 aG~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~ 399 (1036)
T PLN02316 327 AGDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADGP 399 (1036)
T ss_pred CCCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecCC
Confidence 34578888863 367899999999998532 333333 24569999999999999999997 663
No 244
>PLN02950 4-alpha-glucanotransferase
Probab=93.74 E-value=0.45 Score=53.82 Aligned_cols=74 Identities=19% Similarity=0.356 Sum_probs=54.2
Q ss_pred cCCcceEEEEEecC----CCceEEEEeccC---CCCCC--CCCCcCCCCCCeEEEEEEcCCc--eEEEEEEE---cCe--
Q 011558 16 VGSILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPG--HHQYKFYV---DGE-- 79 (483)
Q Consensus 16 ~~~~~~~~~f~~~~----~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~l~~g--~~~ykf~v---dg~-- 79 (483)
.++..++|+|.... .|.+|+|+|+=. ||++. .+|.... ...|++++.+|++ ..+|||++ +|.
T Consensus 148 ~~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~--~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~ 225 (909)
T PLN02950 148 PAPDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTG--DSIWEADCLVPKSDFPIKYKYALQTAEGLVS 225 (909)
T ss_pred CCCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCC--CCcEEEEEEecCCCceEEEEEEEEcCCCceE
Confidence 45567888998643 488999999876 89864 4666543 6789999999988 48999998 444
Q ss_pred eeeCCCCCeeeC
Q 011558 80 WRHDENQPHVSG 91 (483)
Q Consensus 80 w~~d~~~~~~~~ 91 (483)
|-..++.-....
T Consensus 226 WE~g~NR~~~~p 237 (909)
T PLN02950 226 LELGVNRELSLD 237 (909)
T ss_pred EeeCCCceeecC
Confidence 866665544433
No 245
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=93.72 E-value=0.16 Score=55.22 Aligned_cols=65 Identities=18% Similarity=0.279 Sum_probs=44.6
Q ss_pred EEEE-ecCCCceEEEEeccCCCCC-----CCCCCcCCCCCCeEEEEEE-cCCc-eEEEEEEEcCe--eeeCCCCCeee
Q 011558 23 VRFI-WPNGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICR-LPPG-HHQYKFYVDGE--WRHDENQPHVS 90 (483)
Q Consensus 23 ~~f~-~~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~~~~~~~~~-l~~g-~~~ykf~vdg~--w~~d~~~~~~~ 90 (483)
++|+ |...|++|.|++ |++|+. .++|.+.. .|+|++.++ +.+| .|.|++..+|. ++.||......
T Consensus 21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~--~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~~~ 95 (605)
T TIGR02104 21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGE--NGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKAVT 95 (605)
T ss_pred eEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCC--CCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCcceec
Confidence 5674 566799999998 888853 35888755 799999987 4455 34444444565 48888665543
No 246
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=93.39 E-value=0.69 Score=39.00 Aligned_cols=81 Identities=22% Similarity=0.396 Sum_probs=54.6
Q ss_pred eEEEEEec----CCCceEEEEeccCCCCCC-----CCCCcCCCCCCeEEEEEEcCCc-eEEEEEEEcCe--------e--
Q 011558 21 VPVRFIWP----NGGRRVSLSGSFTRWSEP-----MPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDGE--------W-- 80 (483)
Q Consensus 21 ~~~~f~~~----~~~~~V~l~Gsf~~W~~~-----~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~vdg~--------w-- 80 (483)
+-|+|.|. .....+.|.|..|++... ..|.+.++ ..+|..++.||.+ +-.|+|+.+-. |
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~g-TDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r 80 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPG-TDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWR 80 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TT-SSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHH
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCC-CceEEEEEEECcccEEEEEEEecCcccchhHHHHHH
Confidence 46899999 345669999999998542 37778765 5799999999998 78999996432 2
Q ss_pred ------eeCCCCCeee-CC---CCCeeeEEEe
Q 011558 81 ------RHDENQPHVS-GN---YGVVNCVYIA 102 (483)
Q Consensus 81 ------~~d~~~~~~~-~~---~g~~nn~~~v 102 (483)
..||-+|... .. .|..-++++.
T Consensus 81 ~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~L 112 (122)
T PF11806_consen 81 AILAQAQADPLNPRPWPNGAQDRGNAASVLEL 112 (122)
T ss_dssp HHGGG-B--TTSSSEEE-TT---SSEEEEEE-
T ss_pred HHHhccCCCCCCCCCCCCCccccccccCceeC
Confidence 6789888654 33 4889999998
No 247
>PLN02950 4-alpha-glucanotransferase
Probab=93.08 E-value=0.64 Score=52.62 Aligned_cols=68 Identities=25% Similarity=0.513 Sum_probs=48.2
Q ss_pred CCcceEEEEEecC---CCceEEEEeccC---CCCCC--CCCCcCC-CCCCeEEEEEEcCCc-eEEEEEEE---cCe---e
Q 011558 17 GSILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE-GCPAVFQIICRLPPG-HHQYKFYV---DGE---W 80 (483)
Q Consensus 17 ~~~~~~~~f~~~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~-~~~~~~~~~~~l~~g-~~~ykf~v---dg~---w 80 (483)
.+..+.++|.-++ -|.+|+|+|+-. +|+.. .+|.... .....|++++.||.| ..+|||++ +|. |
T Consensus 5 ~~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g~vi~W 84 (909)
T PLN02950 5 SLKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYVVDDNKNVLRW 84 (909)
T ss_pred CCCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEEEeCCCceeee
Confidence 3445677777654 388999999886 79864 5886543 123489999999998 59999995 343 6
Q ss_pred eeCC
Q 011558 81 RHDE 84 (483)
Q Consensus 81 ~~d~ 84 (483)
-..+
T Consensus 85 E~g~ 88 (909)
T PLN02950 85 EAGK 88 (909)
T ss_pred ecCC
Confidence 5554
No 248
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.83 E-value=0.24 Score=48.23 Aligned_cols=91 Identities=14% Similarity=0.176 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccccccccccc
Q 011558 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEAN 347 (483)
Q Consensus 268 ~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m 347 (483)
..-..++..+.....+.+.+++. .+ +.+|+++..+..+.. +
T Consensus 293 ~~~~~al~~~~~~~~~~~~~~~~---~~---~~~g~v~~~~~~~~~---------------------------------~ 333 (386)
T COG4175 293 DGPRVALKLLRDEGREYGYAVDR---GN---KFVGVVSIDSLVKAA---------------------------------L 333 (386)
T ss_pred cccchhhhhhhhccchhhHHHhc---cC---ceeeEEeccchhccc---------------------------------c
Confidence 34456777777776666666632 34 688888887765530 3
Q ss_pred CCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558 348 GRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 398 (483)
Q Consensus 348 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~ 398 (483)
.+++.++..++++.+.+..+.+... .+||+|++++++|++++..++.++.
T Consensus 334 ~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 334 IDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred cccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHh
Confidence 3467788999999999988877654 5999999999999999999998664
No 249
>PLN02316 synthase/transferase
Probab=92.68 E-value=0.34 Score=55.17 Aligned_cols=59 Identities=14% Similarity=0.239 Sum_probs=46.8
Q ss_pred eEEEEEecC------CCceEEEEeccCCCCCC---CCCCcCCCCCCeEEEEEEcCCceEEEEEEE-cCe
Q 011558 21 VPVRFIWPN------GGRRVSLSGSFTRWSEP---MPMSPSEGCPAVFQIICRLPPGHHQYKFYV-DGE 79 (483)
Q Consensus 21 ~~~~f~~~~------~~~~V~l~Gsf~~W~~~---~~m~~~~~~~~~~~~~~~l~~g~~~ykf~v-dg~ 79 (483)
-++++.|+. +..+|.|.|-||+|.-. .+|.+.+..+++|++.+.+|++-|..-|+. ||.
T Consensus 154 ~~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~ 222 (1036)
T PLN02316 154 SDIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQ 222 (1036)
T ss_pred CeeEEEEcCCCCccCCCCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCc
Confidence 356666644 25679999999999753 377777655789999999999999999998 774
No 250
>PLN02960 alpha-amylase
Probab=89.91 E-value=0.38 Score=53.38 Aligned_cols=52 Identities=29% Similarity=0.518 Sum_probs=39.5
Q ss_pred EEEecCCCceEEEEeccCCCCCCC-CCC-----cCCCCCCeEEEEEE--cCCc----e-E--EEEEEEc
Q 011558 24 RFIWPNGGRRVSLSGSFTRWSEPM-PMS-----PSEGCPAVFQIICR--LPPG----H-H--QYKFYVD 77 (483)
Q Consensus 24 ~f~~~~~~~~V~l~Gsf~~W~~~~-~m~-----~~~~~~~~~~~~~~--l~~g----~-~--~ykf~vd 77 (483)
-..|..+|+.++|+|+||||+++. +|. +.+ =|+|.++++ |..| . | ||.|..|
T Consensus 132 ~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 132 FMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDD--FGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred EEEEcCCceeEEEeecccCCCcccchhhcccccccc--cceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 346999999999999999999864 554 444 689998876 5555 2 2 7888774
No 251
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=89.32 E-value=0.8 Score=46.72 Aligned_cols=48 Identities=13% Similarity=0.211 Sum_probs=40.9
Q ss_pred CCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 011558 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 398 (483)
Q Consensus 349 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~ 398 (483)
....++.+++++.+++..+.+.+.. ++|+|+ |+++|+|++.+++..+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 333 AAPTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred ccCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHHh
Confidence 3567889999999999998887654 889985 99999999999988654
No 252
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=89.00 E-value=0.9 Score=50.07 Aligned_cols=54 Identities=22% Similarity=0.485 Sum_probs=39.0
Q ss_pred EEEE-ecCCCceEEEEeccCCCCC----CCCCCcCCCCCCeEEEEEE-cCCceEEEEEEEcCee
Q 011558 23 VRFI-WPNGGRRVSLSGSFTRWSE----PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW 80 (483)
Q Consensus 23 ~~f~-~~~~~~~V~l~Gsf~~W~~----~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~w 80 (483)
++|+ |...|++|.|+ -|++|.. ..+|.+.. +|+|++.++ +.+|. .|+|.|+|.|
T Consensus 16 ~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~g~-~Y~yrv~g~~ 75 (688)
T TIGR02100 16 VNFALFSANAEKVELC-LFDAQGEKEEARLPLPERT--DDIWHGYLPGAQPGQ-LYGYRVHGPY 75 (688)
T ss_pred EEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCC--CCEEEEEECCCCCCC-EEEEEEeeee
Confidence 5664 56669999986 5665542 34787755 799999986 66666 5999999854
No 253
>PRK03705 glycogen debranching enzyme; Provisional
Probab=87.59 E-value=0.92 Score=49.64 Aligned_cols=54 Identities=22% Similarity=0.480 Sum_probs=39.2
Q ss_pred EEE-EecCCCceEEEEeccCCCC--CCCCCCcCCCCCCeEEEEEE-cCCceEEEEEEEcCee
Q 011558 23 VRF-IWPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW 80 (483)
Q Consensus 23 ~~f-~~~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~w 80 (483)
+.| +|...|++|.|+. |++|. ..++|.+.. .|+|++.++ +.+| ..|+|.|+|.|
T Consensus 21 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~G-~~Y~yrv~g~~ 78 (658)
T PRK03705 21 VNFTLFSAHAERVELCV-FDENGQEQRYDLPARS--GDIWHGYLPGARPG-LRYGYRVHGPW 78 (658)
T ss_pred EEEEEECCCCCEEEEEE-EcCCCCeeeEeeeecc--CCEEEEEECCCCCC-CEEEEEEcccc
Confidence 566 4566799999997 77653 235887654 799999887 4455 46999999854
No 254
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=87.04 E-value=4.6 Score=41.70 Aligned_cols=87 Identities=26% Similarity=0.389 Sum_probs=58.4
Q ss_pred CCcceEEEEEecCC-C-------ceEEEEe--ccC--CCCCCCCCCcCCCCCCeEEEEEEcCCc-eEEEEEEEc---C--
Q 011558 17 GSILVPVRFIWPNG-G-------RRVSLSG--SFT--RWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVD---G-- 78 (483)
Q Consensus 17 ~~~~~~~~f~~~~~-~-------~~V~l~G--sf~--~W~~~~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~vd---g-- 78 (483)
....+-|||.|..+ + +.|+|-+ ..+ .+....+|.+..+ ..+|..++.||.. +-.|+|+++ .
T Consensus 35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~-tDvW~~~~~~p~~~r~sY~~~~~~~~~~~ 113 (411)
T PRK10439 35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAG-TDVWQWSTELSANWRGSYCFIPTERDDIF 113 (411)
T ss_pred CCCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCC-CceEEEEEEECcccEEEEEEEeccccccc
Confidence 45678999999864 2 2488732 222 1333347888865 5789999999998 789999982 1
Q ss_pred ----------e------e-------eeCCCCCeee-CCCCCeeeEEEeccC
Q 011558 79 ----------E------W-------RHDENQPHVS-GNYGVVNCVYIAVPQ 105 (483)
Q Consensus 79 ----------~------w-------~~d~~~~~~~-~~~g~~nn~~~v~~~ 105 (483)
. | ..||.+|... +..|+-.|++++ ..
T Consensus 114 ~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l-p~ 163 (411)
T PRK10439 114 SAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM-PQ 163 (411)
T ss_pred cccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC-CC
Confidence 0 2 3788887653 445555688888 53
No 255
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=86.99 E-value=1.4 Score=50.83 Aligned_cols=65 Identities=12% Similarity=0.229 Sum_probs=45.9
Q ss_pred EEE-EecCCCceEEEEe-ccCCCCC---CCCCCcCCCCCCeEEEEEE-cCCc-----eEEEEEEEcC----eeeeCCCCC
Q 011558 23 VRF-IWPNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICR-LPPG-----HHQYKFYVDG----EWRHDENQP 87 (483)
Q Consensus 23 ~~f-~~~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~-l~~g-----~~~ykf~vdg----~w~~d~~~~ 87 (483)
++| .|...|++|.|++ .+++|.. .++|.+.+ .|+|++.++ +.+| -+.|+|.|++ ....||...
T Consensus 329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~--~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~ 406 (1111)
T TIGR02102 329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGD--RGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK 406 (1111)
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCC--CCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence 455 4677799999998 4556754 46898765 899999886 3432 3688888866 367777555
Q ss_pred ee
Q 011558 88 HV 89 (483)
Q Consensus 88 ~~ 89 (483)
.+
T Consensus 407 al 408 (1111)
T TIGR02102 407 SL 408 (1111)
T ss_pred EE
Confidence 43
No 256
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=86.27 E-value=2.2 Score=40.65 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 011558 357 TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 395 (483)
Q Consensus 357 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~ 395 (483)
.....+++..+...+.+.+||+|++|+++|.+++.+++.
T Consensus 269 ~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 269 GFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred chhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence 334456777888889999999999999999999999875
No 257
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=82.73 E-value=4.9 Score=45.46 Aligned_cols=66 Identities=21% Similarity=0.314 Sum_probs=43.7
Q ss_pred EEE-EecCCCceEEEEeccCCCCC--CCCCCcCCCCCCeEEEEEE-cCCceEEEEEEEc------Ce----eeeCCCCCe
Q 011558 23 VRF-IWPNGGRRVSLSGSFTRWSE--PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD------GE----WRHDENQPH 88 (483)
Q Consensus 23 ~~f-~~~~~~~~V~l~Gsf~~W~~--~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vd------g~----w~~d~~~~~ 88 (483)
++| .|...|++|.|++..++|.. .++|.+.+ ..|+|++.++ ...|. .|+|.|+ |+ +..||....
T Consensus 137 v~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~-~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~a 214 (898)
T TIGR02103 137 VTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDS-TSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSVS 214 (898)
T ss_pred EEEEEECCCCCEEEEEEEcCCCCccceEeCccCC-CCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcce
Confidence 445 47777999999977766642 35887752 2799999986 33454 4677765 53 367776655
Q ss_pred ee
Q 011558 89 VS 90 (483)
Q Consensus 89 ~~ 90 (483)
..
T Consensus 215 ls 216 (898)
T TIGR02103 215 LS 216 (898)
T ss_pred Ec
Confidence 43
No 258
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=82.36 E-value=4.9 Score=33.01 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=39.6
Q ss_pred cceEEEEEecC-CCceEEEEeccCC--CCC-CCCCCcCCCCC--CeEEEEEEcCCceEEEEEEE
Q 011558 19 ILVPVRFIWPN-GGRRVSLSGSFTR--WSE-PMPMSPSEGCP--AVFQIICRLPPGHHQYKFYV 76 (483)
Q Consensus 19 ~~~~~~f~~~~-~~~~V~l~Gsf~~--W~~-~~~m~~~~~~~--~~~~~~~~l~~g~~~ykf~v 76 (483)
..+.++++-+. ..++|.|.-.-+. |.. ..+|.+....+ ..|+++++++.|.+.|.|.+
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence 56677776643 3677888655442 222 46888764322 35999999888999999999
No 259
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=80.04 E-value=6.4 Score=30.56 Aligned_cols=62 Identities=26% Similarity=0.317 Sum_probs=42.4
Q ss_pred CCcceEEEEEecCCC---ceEEEEeccC-CCCCCCCCCcCCCCCCeEEEEEEcCCceEEEEEEE-c-CeeeeC
Q 011558 17 GSILVPVRFIWPNGG---RRVSLSGSFT-RWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYV-D-GEWRHD 83 (483)
Q Consensus 17 ~~~~~~~~f~~~~~~---~~V~l~Gsf~-~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~v-d-g~w~~d 83 (483)
.+.-.-+.+.+.+|+ .+|.|.++=+ +|. +|.+.- ...|++.-.++.|-+.+|+-. | |+|...
T Consensus 10 ~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~---~m~r~w--Ga~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 10 NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWI---PMKRSW--GAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp BTTEEEEEEEECCTTS-EEEEEEEETTSSS-E---E-EEEC--TTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred CCcEEEEEEEEcCCCccEEEEEEEeCCCCCce---EeecCc--CceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 456677778887664 4599995444 585 688876 679998877777899999988 7 887764
No 260
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=79.00 E-value=1.5 Score=47.35 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=32.5
Q ss_pred cCCcceEEEE-EecCCCceEEEEeccCCCCCCC-CCC-cCCCCCCeEEEEEE
Q 011558 16 VGSILVPVRF-IWPNGGRRVSLSGSFTRWSEPM-PMS-PSEGCPAVFQIICR 64 (483)
Q Consensus 16 ~~~~~~~~~f-~~~~~~~~V~l~Gsf~~W~~~~-~m~-~~~~~~~~~~~~~~ 64 (483)
.++... +.| .|..+++.|.++|+||||+... .+. +.+ .|.|++.++
T Consensus 109 ~~~d~~-v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~k~~--~g~w~i~l~ 157 (757)
T KOG0470|consen 109 RTPDGR-VDFTEWAPLAEAVSLIGDFNNWNPSSNELKPKDD--LGVWEIDLP 157 (757)
T ss_pred ccCCCc-eeeeeecccccccccccccCCCCCcccccCcccc--cceeEEecC
Confidence 344443 555 4777899999999999999853 444 333 789987765
No 261
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=72.83 E-value=10 Score=44.80 Aligned_cols=54 Identities=19% Similarity=0.361 Sum_probs=39.7
Q ss_pred EEEE-ecCCCceEEEEeccCCCCCC----CCCCcCCCCCCeEEEEEE-cCCceEEEEEEEcCee
Q 011558 23 VRFI-WPNGGRRVSLSGSFTRWSEP----MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW 80 (483)
Q Consensus 23 ~~f~-~~~~~~~V~l~Gsf~~W~~~----~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vdg~w 80 (483)
|+|. |...+++|.|+ -|++|... ++|... .+++|.+.+. +.+|. .|+|.|+|.|
T Consensus 25 v~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~~--~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 25 VNLALFSGAAERVEFC-LFDLWGVREEARIKLPGR--TGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred EEEEEECCCCCEEEEE-EEECCCCCeeEEEECCCC--cCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 6675 45669999998 89998643 456443 3789988866 67786 6999999865
No 262
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=72.69 E-value=13 Score=31.56 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=33.6
Q ss_pred ceEEEEEecCC-CceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEE
Q 011558 20 LVPVRFIWPNG-GRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYK 73 (483)
Q Consensus 20 ~~~~~f~~~~~-~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~yk 73 (483)
.=.|+|+|... ++.|...+...-|... .+.-.. +..|+.+++- ||.|.|+
T Consensus 61 GDTVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~~~--~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 61 GDTVTWVNTDSVGHNVTAVGGMDPEGSG-TLKAGI--NESFTHTFET-PGEYTYY 111 (128)
T ss_pred CCEEEEEECCCCCceEEEeCCCCccccc-ccccCC--CcceEEEecc-cceEEEE
Confidence 34789999888 9999999998544331 222211 3456666665 8999885
No 263
>PLN03244 alpha-amylase; Provisional
Probab=71.84 E-value=4.3 Score=44.78 Aligned_cols=65 Identities=25% Similarity=0.400 Sum_probs=43.3
Q ss_pred CCCCccCCc-ceEEEEEecCCCceEEEEeccCCCCCCCC------CCcCCCCCCeEEEEEE--cCCc----eE---EEEE
Q 011558 11 ENSGVVGSI-LVPVRFIWPNGGRRVSLSGSFTRWSEPMP------MSPSEGCPAVFQIICR--LPPG----HH---QYKF 74 (483)
Q Consensus 11 ~~~~~~~~~-~~~~~f~~~~~~~~V~l~Gsf~~W~~~~~------m~~~~~~~~~~~~~~~--l~~g----~~---~ykf 74 (483)
+-+|..... ..-.--.|..||+--+|.|+||||+++.. |.+.+ =|+|.+.++ |..| .| ||.|
T Consensus 121 e~~g~~r~~~~~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (872)
T PLN03244 121 EILGMHRHMEHRVDFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDD--YGYWFIILEDKLREGEEPDELYFQQYNY 198 (872)
T ss_pred hhhccccCcccCceeEeecCCcceeeeeccccCCCccccccccccccccc--cceEEEEechhhhcCCCchhhhHhhhcc
Confidence 334443333 23344579999999999999999998643 33444 689998876 5555 22 6777
Q ss_pred EEc
Q 011558 75 YVD 77 (483)
Q Consensus 75 ~vd 77 (483)
.-|
T Consensus 199 ~~~ 201 (872)
T PLN03244 199 VDD 201 (872)
T ss_pred ccc
Confidence 654
No 264
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=66.27 E-value=7.9 Score=42.11 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=47.1
Q ss_pred cCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeC-CCCeEEEEEehHHHHHHH
Q 011558 428 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA-GSKRVEGIISLSDVFRFL 480 (483)
Q Consensus 428 ~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~-~~~~l~GiIs~~DIl~~l 480 (483)
+|-+++..+..++|..|+.+.+....++.+|+||+ ++.-++|.|+++.+..+|
T Consensus 593 iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll 646 (931)
T KOG0476|consen 593 IMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL 646 (931)
T ss_pred eccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence 89999999999999999999888877999999974 356799999999998776
No 265
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=65.29 E-value=9 Score=31.97 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=44.4
Q ss_pred CCcceEEEEEec-CCCceEEEE-eccCCC----CC-CCCCCcCCC--CCCeEEEEEEcCCceEEEEEEE--cCe-eeeCC
Q 011558 17 GSILVPVRFIWP-NGGRRVSLS-GSFTRW----SE-PMPMSPSEG--CPAVFQIICRLPPGHHQYKFYV--DGE-WRHDE 84 (483)
Q Consensus 17 ~~~~~~~~f~~~-~~~~~V~l~-Gsf~~W----~~-~~~m~~~~~--~~~~~~~~~~l~~g~~~ykf~v--dg~-w~~d~ 84 (483)
...++.++|+=. +..++|.|. |+-.+| .. ..+|.+... .-..|+++++++..+..|.|.| +|+ |-.++
T Consensus 19 ~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~~~y~~ 98 (120)
T PF02903_consen 19 DGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELEDGGETYYYGE 98 (120)
T ss_dssp CTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEETTEEEEEET
T ss_pred CCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEeCCEEEEEeC
Confidence 456778888875 457888884 677666 21 247876432 1347899999999999999998 344 54444
No 266
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=64.49 E-value=8.9 Score=40.57 Aligned_cols=114 Identities=14% Similarity=0.206 Sum_probs=72.4
Q ss_pred cccccCC--CeeEecCCCCHH-HHHHHHHhCCCCEEEEEcCCC--cEEEEEeHHHHHHHHhcccccccccCCccHHHHHh
Q 011558 343 IGEANGR--PFAMLRPTASLG-SALALLVQADVSSIPIVDDND--SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ 417 (483)
Q Consensus 343 v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~g--~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~ 417 (483)
++++|.+ .+..+..+..+. +......+++++++||.+.+. .+.|.+....+ .+..... .+...++..
T Consensus 206 ~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~-~~~~~~~----~~~~~~v~~--- 277 (498)
T KOG2118|consen 206 VGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL-RLLQVEV----PLEPLPVSE--- 277 (498)
T ss_pred HHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh-hhhcccc----ccccccchh---
Confidence 3455654 455666777775 555566689999999998533 22222222222 2221111 111233333
Q ss_pred cCCCCCCCcccCCCcceEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHH
Q 011558 418 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDV 476 (483)
Q Consensus 418 ~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DI 476 (483)
.+..+...+..++++.+.++.+.+.+.|.+.|.. ...-++++++.|+
T Consensus 278 ----------~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~--~~~~~~~~~l~~~ 324 (498)
T KOG2118|consen 278 ----------SALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN--GHVDIFVLTLEDL 324 (498)
T ss_pred ----------hhccccccCCCcccHHHHHHHHhhhhceeEEEec--CCcceeeEeccch
Confidence 3445677889999999999999999998877776 3567899999987
No 267
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=60.50 E-value=16 Score=39.14 Aligned_cols=63 Identities=21% Similarity=0.406 Sum_probs=43.5
Q ss_pred CCCCCCCCcCCCCCCeEEEEEEcCCc-eEEEEEEEcCe----eeeCCCCCeeeCCCCCeeeEEEeccCCCCCC
Q 011558 43 WSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDGE----WRHDENQPHVSGNYGVVNCVYIAVPQPDMVP 110 (483)
Q Consensus 43 W~~~~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~vdg~----w~~d~~~~~~~~~~g~~nn~~~v~~~~~~~~ 110 (483)
|.. +.+.+..-.+|.|-+.|+.+|| .|.|+|.|+++ |=|........++ +---|.| .++...|
T Consensus 85 WhG-v~q~kn~w~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G---~~G~liI-~~~~~~p 152 (563)
T KOG1263|consen 85 WHG-VRQRKNPWQDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATG---VFGALII-NPRPGLP 152 (563)
T ss_pred ecc-ccccCCccccCCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccC---ceeEEEE-cCCccCC
Confidence 655 5555555447788888999999 69999999955 7777666654442 4455666 5555555
No 268
>PLN02877 alpha-amylase/limit dextrinase
Probab=57.83 E-value=38 Score=38.79 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=33.2
Q ss_pred EEE-EecCCCceEEEEeccCCCC---C--CCCCCcCCCCCCeEEEEEEcCCceEEEEEEEc
Q 011558 23 VRF-IWPNGGRRVSLSGSFTRWS---E--PMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77 (483)
Q Consensus 23 ~~f-~~~~~~~~V~l~Gsf~~W~---~--~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vd 77 (483)
++| .|...|++|.|+- |++|. + .++|. ...|+|++.++-..-...|+|.|+
T Consensus 224 ~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~---~~~GVWsv~v~~~~~G~~Y~Y~V~ 280 (970)
T PLN02877 224 VSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK---ESNGVWSVEGPKSWEGCYYVYEVS 280 (970)
T ss_pred EEEEEECCCCCEEEEEE-ecCCCCccceEEeccc---CCCCEEEEEeccCCCCCeeEEEEe
Confidence 455 5777799999985 66553 2 23565 238999998874332345777775
No 269
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=52.87 E-value=43 Score=36.79 Aligned_cols=97 Identities=11% Similarity=0.126 Sum_probs=57.3
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhc-ccccccccC-----CccHHHHHhcCCCCCCCcccCCCcc
Q 011558 360 LGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD-KAYAQIHLD-----EMNIHQALQLGQDANPSLGFNGQRC 433 (483)
Q Consensus 360 l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~-~~~~~~~l~-----~~~v~~~l~~~~~~~~~~~~m~~~~ 433 (483)
+....+.+...+ ..+.++|.+|.++.+....+++..... +...-..|. ...++-++.. ..+
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~~------------~~p 127 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAIS------------GQP 127 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHhc------------CCc
Confidence 344555555555 678999999999999988887764432 111111111 1223333322 234
Q ss_pred eEEeCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeh
Q 011558 434 QMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL 473 (483)
Q Consensus 434 ~~v~~~~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~ 473 (483)
+.+....-..+.+. .-.....||.|+ +|+++|+|++
T Consensus 128 v~v~g~EH~~~~~~---~~~c~aaPI~d~-~G~liGvl~l 163 (638)
T PRK11388 128 VKTMGDQHFKQALH---NWAFCATPVFDS-KGRLTGTIAL 163 (638)
T ss_pred eEEecHHHHHHhcc---CceEEeeEEEcC-CCCEEEEEEE
Confidence 45555554444433 334456899995 7999999974
No 270
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=51.40 E-value=34 Score=34.64 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=28.9
Q ss_pred EEEeccCCCCCCCCCCcCCCCCCeEEEEEEc--CCceEEEEEEEcCe
Q 011558 35 SLSGSFTRWSEPMPMSPSEGCPAVFQIICRL--PPGHHQYKFYVDGE 79 (483)
Q Consensus 35 ~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l--~~g~~~ykf~vdg~ 79 (483)
.+.|+|.+ ....+.... .+|+|+..++| +||.|+.++.++|.
T Consensus 152 ~vvg~f~D--dG~g~DE~p-~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 152 IVVGEFED--DGEGLDERP-GDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred EEEEeecc--CCccCCCCC-CCceEEEEeeccCCCceEEEEEEEcCc
Confidence 46677753 222333322 38999888654 78999999999986
No 271
>PRK10785 maltodextrin glucosidase; Provisional
Probab=49.38 E-value=50 Score=35.96 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=43.8
Q ss_pred CCcceEEEEEecCC--CceEEEEeccCCCCCCCCCCcCCCCC--CeEEEEEEcC--CceEEEEEEE--cCe
Q 011558 17 GSILVPVRFIWPNG--GRRVSLSGSFTRWSEPMPMSPSEGCP--AVFQIICRLP--PGHHQYKFYV--DGE 79 (483)
Q Consensus 17 ~~~~~~~~f~~~~~--~~~V~l~Gsf~~W~~~~~m~~~~~~~--~~~~~~~~l~--~g~~~ykf~v--dg~ 79 (483)
....+.++++-+.+ .++|.|.=.+++-....+|.+....+ .+|+++++++ ++.+.|.|.+ +|+
T Consensus 17 ~~~~~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 17 SKDQLLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred CCCEEEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 45678888876543 57899876666544456888765332 3589999886 6889999988 554
No 272
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=49.21 E-value=68 Score=26.71 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=26.5
Q ss_pred cceEEEEEecCCCceEEEE-eccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEE
Q 011558 19 ILVPVRFIWPNGGRRVSLS-GSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYK 73 (483)
Q Consensus 19 ~~~~~~f~~~~~~~~V~l~-Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~yk 73 (483)
..=.|+|+|..+++.|... |..- +... ..... .+..|+.+++ .+|.|.|.
T Consensus 21 ~GdTV~f~n~d~~Hnv~~~~~~~p-~g~~-~~~s~--~g~~~~~tF~-~~G~Y~Y~ 71 (116)
T TIGR02375 21 PGDTVTFVPTDKGHNVETIKGMIP-EGAE-AFKSK--INEEYTVTVT-EEGVYGVK 71 (116)
T ss_pred CCCEEEEEECCCCeeEEEccCCCc-CCcc-cccCC--CCCEEEEEeC-CCEEEEEE
Confidence 4457899998777766542 2111 1110 11111 1456776666 57888774
No 273
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=48.85 E-value=36 Score=26.78 Aligned_cols=32 Identities=25% Similarity=0.501 Sum_probs=25.7
Q ss_pred CCeEEEEEEcCCceEEEEEEEcCeeeeCCCCCe
Q 011558 56 PAVFQIICRLPPGHHQYKFYVDGEWRHDENQPH 88 (483)
Q Consensus 56 ~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~ 88 (483)
+|.=++.++|+||+|...-+. |.+.|-+..|.
T Consensus 50 ~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 50 KGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 678888999999999999887 66666666554
No 274
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=48.16 E-value=38 Score=30.81 Aligned_cols=40 Identities=33% Similarity=0.758 Sum_probs=23.7
Q ss_pred CCCCCCCCCCcCCCCCCeEEEEEEcC-CceEEEEEE--Ec--CeeeeC
Q 011558 41 TRWSEPMPMSPSEGCPAVFQIICRLP-PGHHQYKFY--VD--GEWRHD 83 (483)
Q Consensus 41 ~~W~~~~~m~~~~~~~~~~~~~~~l~-~g~~~ykf~--vd--g~w~~d 83 (483)
..|+. +||.+.. +..|+..+.+. +|.|+|+.. +| +.|+++
T Consensus 55 ~~w~~-vpM~~~g--nDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~ 99 (187)
T PF11896_consen 55 REWQE-VPMTPLG--NDRWEASFTPDRPGRYEFRVEAWVDHFATWRHD 99 (187)
T ss_dssp -B-----B-EEST--S-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHH
T ss_pred Cccee-eccccCC--CCEEEEEEECCCceeEEEEEEEEeccHHHHHHh
Confidence 35987 7999985 88999999886 499999887 35 347775
No 275
>TIGR03009 plancto_dom_2 Planctomycetes uncharacterized domain TIGR03009. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to four proteins per genome. The function is unknown.
Probab=45.87 E-value=20 Score=33.25 Aligned_cols=16 Identities=13% Similarity=0.405 Sum_probs=12.1
Q ss_pred EE-cCe--eeeCCCCCeee
Q 011558 75 YV-DGE--WRHDENQPHVS 90 (483)
Q Consensus 75 ~v-dg~--w~~d~~~~~~~ 90 (483)
+| ||+ |.+|++...++
T Consensus 67 iVsDGk~lW~YDpdleQVT 85 (210)
T TIGR03009 67 WICNGTAVYAYNGLAKTVT 85 (210)
T ss_pred EEECCCEEEEECCChhhEE
Confidence 44 887 99999777655
No 276
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=40.09 E-value=1.1e+02 Score=23.34 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=29.8
Q ss_pred EEEEEecCCCceEEEEeccCCCCCCCCCCcCCCCCCeEEE-EEEcCCc-eEEEEEEE----cCeee
Q 011558 22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQI-ICRLPPG-HHQYKFYV----DGEWR 81 (483)
Q Consensus 22 ~~~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~-~~~l~~g-~~~ykf~v----dg~w~ 81 (483)
.+++..|.+++ |++.|.=++=. +...+. +-+|++| .|.|++.+ ||+-.
T Consensus 4 ~itv~vPadAk-l~v~G~~t~~~-----------G~~R~F~T~~L~~G~~y~Y~v~a~~~~dG~~~ 57 (75)
T TIGR03000 4 TITVTLPADAK-LKVDGKETNGT-----------GTVRTFTTPPLEAGKEYEYTVTAEYDRDGRIL 57 (75)
T ss_pred EEEEEeCCCCE-EEECCeEcccC-----------ccEEEEECCCCCCCCEEEEEEEEEEecCCcEE
Confidence 45666674444 88877543221 233333 4789999 59999988 77543
No 277
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=38.12 E-value=1.1e+02 Score=25.33 Aligned_cols=49 Identities=22% Similarity=0.372 Sum_probs=25.8
Q ss_pred ceEEEEEecC--CCceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEE
Q 011558 20 LVPVRFIWPN--GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYK 73 (483)
Q Consensus 20 ~~~~~f~~~~--~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~yk 73 (483)
.-.|+|+|.. .+..|.-.+. ..|+.. .+.... +..|+.+++ .||.|.|.
T Consensus 49 GdTVtw~~~~d~~~HnV~s~~~-~~f~s~-~~~~~~--G~t~s~Tf~-~~G~Y~Y~ 99 (115)
T TIGR03102 49 GTTVVWEWTGEGGGHNVVSDGD-GDLDES-ERVSEE--GTTYEHTFE-EPGIYLYV 99 (115)
T ss_pred CCEEEEEECCCCCCEEEEECCC-CCcccc-ccccCC--CCEEEEEec-CCcEEEEE
Confidence 3467788865 3566654311 124321 111111 457888875 68888885
No 278
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=37.57 E-value=1.4e+02 Score=32.69 Aligned_cols=99 Identities=11% Similarity=0.075 Sum_probs=54.9
Q ss_pred HHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHh-hccCCCCCCcccccccccccccccccccccccCCC
Q 011558 272 EVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR-HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRP 350 (483)
Q Consensus 272 ~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~-~~~~~~~~~~~~~~~v~~l~i~~~~~~v~~~m~~~ 350 (483)
+..+.+...+ ..+.+.|. +| .++++....++++.+.. .+.. ...+-...++.-.+|+-. ....
T Consensus 63 ~l~~~l~~~~-~~~~l~D~---~G---~vL~~~g~~~~~~~~~~~~~~~---G~~w~E~~~GTnaig~al------~~~~ 126 (638)
T PRK11388 63 DAWEYMADRE-CALLILDE---TG---CILSRNGDPQTLQQLSALGFND---GTYCAEGIIGTNALSLAA------ISGQ 126 (638)
T ss_pred HHHHHhcCCC-cEEEEEcC---Cc---eEEEEeCCHHHHHHHHHcCCcc---CCccchhccCcCHHHHHH------hcCC
Confidence 3334444444 56777754 56 89999999888776643 1211 011112222222222221 1234
Q ss_pred eeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEe
Q 011558 351 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 389 (483)
Q Consensus 351 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit 389 (483)
++.|.......+ .+......+.||.|.+|+++|+++
T Consensus 127 pv~v~g~EH~~~---~~~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 127 PVKTMGDQHFKQ---ALHNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred ceEEecHHHHHH---hccCceEEeeEEEcCCCCEEEEEE
Confidence 455555543333 333445678999999999999996
No 279
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=36.43 E-value=74 Score=24.26 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCcEEEEEeHHHHHHHHhcc
Q 011558 372 VSSIPIVDDNDSLLDIYSRSDITALAKDK 400 (483)
Q Consensus 372 ~~~lpVvd~~g~lvGiit~~di~~l~~~~ 400 (483)
...+-|+|++|..+|+++.++.+.+....
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~ 40 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEK 40 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHT
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHc
Confidence 45678899999999999999999877643
No 280
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=36.31 E-value=33 Score=27.60 Aligned_cols=17 Identities=18% Similarity=0.383 Sum_probs=9.9
Q ss_pred CCeEEEEE-EcCCceEEE
Q 011558 56 PAVFQIIC-RLPPGHHQY 72 (483)
Q Consensus 56 ~~~~~~~~-~l~~g~~~y 72 (483)
+..+++++ .++||.|+|
T Consensus 73 g~~~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 73 GETATVTFTPLKPGEYEF 90 (104)
T ss_dssp T-EEEEEEEE-S-EEEEE
T ss_pred CCEEEEEEcCCCCEEEEE
Confidence 34566665 789999887
No 281
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=35.45 E-value=73 Score=24.31 Aligned_cols=26 Identities=15% Similarity=0.401 Sum_probs=19.0
Q ss_pred CCEEEEEeCCCCeEEEEEehHHHHHHH
Q 011558 454 VRRLVIVEAGSKRVEGIISLSDVFRFL 480 (483)
Q Consensus 454 ~~~l~VVd~~~~~l~GiIs~~DIl~~l 480 (483)
...+-||| ++|..+|++++++-++.-
T Consensus 12 ~~~VrlI~-~~g~~lGv~~~~eAl~~A 37 (76)
T PF05198_consen 12 APEVRLID-EDGEQLGVMSLREALRLA 37 (76)
T ss_dssp -SEEEEE--TTS-EEEEEEHHHHHHHH
T ss_pred CCEEEEEC-CCCcEeceEEHHHHHHHH
Confidence 35677899 589999999999988753
No 282
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=35.44 E-value=1e+02 Score=23.66 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=25.9
Q ss_pred EEEEEecCC-CceEE-EEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEE
Q 011558 22 PVRFIWPNG-GRRVS-LSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYK 73 (483)
Q Consensus 22 ~~~f~~~~~-~~~V~-l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~yk 73 (483)
+|+|++..+ +..|. ..|.+.++.-.-++.. . +..|+.+++ .||.|.|.
T Consensus 20 tVt~~N~d~~~Hnv~~~~g~~~~~~~~~~~~~-~--g~~~~~tf~-~~G~y~y~ 69 (83)
T TIGR02657 20 TVTWINREAMPHNVHFVAGVLGEAALKGPMMK-K--EQAYSLTFT-EAGTYDYH 69 (83)
T ss_pred EEEEEECCCCCccEEecCCCCccccccccccC-C--CCEEEEECC-CCEEEEEE
Confidence 567777655 56664 4555544432122221 1 456766664 57877774
No 283
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=34.94 E-value=70 Score=26.35 Aligned_cols=65 Identities=17% Similarity=0.282 Sum_probs=38.6
Q ss_pred ceEEEEEecCC--CceEEEEeccCCCCCCCCCC--cCC--------CCCCeEEEEEEcCCc--------eEEEEEEEcCe
Q 011558 20 LVPVRFIWPNG--GRRVSLSGSFTRWSEPMPMS--PSE--------GCPAVFQIICRLPPG--------HHQYKFYVDGE 79 (483)
Q Consensus 20 ~~~~~f~~~~~--~~~V~l~Gsf~~W~~~~~m~--~~~--------~~~~~~~~~~~l~~g--------~~~ykf~vdg~ 79 (483)
.+.-++....- .|+|.|-=||++|.....+. ... ..-..|...++||+. .+--+|.++|+
T Consensus 20 ~L~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g~ 99 (113)
T PF03370_consen 20 SLSGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNGQ 99 (113)
T ss_dssp EEEEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETTE
T ss_pred EEEEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCCC
Confidence 34444444333 57899999999998654322 111 112478888888754 35668888887
Q ss_pred --eeeCC
Q 011558 80 --WRHDE 84 (483)
Q Consensus 80 --w~~d~ 84 (483)
|-.+.
T Consensus 100 eyWDNN~ 106 (113)
T PF03370_consen 100 EYWDNNN 106 (113)
T ss_dssp EEEESTT
T ss_pred EEecCCC
Confidence 65543
No 284
>COG1559 Aminodeoxychorismate lyase [Coenzyme transport and metabolism]
Probab=32.37 E-value=5.3e+02 Score=25.90 Aligned_cols=144 Identities=16% Similarity=0.205 Sum_probs=84.0
Q ss_pred CeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEechhhHHHHHHhhccCCCCCCccccccccccccccc
Q 011558 260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 339 (483)
Q Consensus 260 ~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i~~~ 339 (483)
..+.+.+.+++.+....+.+++ +|.-..+++++.+.... .+.+..|.|
T Consensus 46 ~~v~I~~Gs~~~~i~~~Le~~~---------------------vI~~~~~f~~~~~~~~~-----------~~~lkaG~Y 93 (342)
T COG1559 46 KTVTIPPGSSVSEIGSELEKQK---------------------VIKNARVFRLYLKYNPA-----------AGSLKAGEY 93 (342)
T ss_pred eEEEECCCCCHHHHHHHHHhcC---------------------ccccHHHHHHHHHhcCc-----------cCCcCCcee
Confidence 7899999999999999987764 23345667776654322 122444555
Q ss_pred ccccccccCCCeeEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhcccccccccCCccHHHHHhcC
Q 011558 340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 419 (483)
Q Consensus 340 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~di~~l~~~~~~~~~~l~~~~v~~~l~~~ 419 (483)
.+.+.++..+++++|.+-+.....++ +..=.+.+++...+................++....
T Consensus 94 -------------~l~~~ms~~~il~~L~~Gk~~~~~~~-----ipEG~t~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~ 155 (342)
T COG1559 94 -------------RLRPGMSAADILKLLESGKSAQFKVT-----IPEGYTLKQIAKKLAEAPVLDGVLDGLAIAEIAARL 155 (342)
T ss_pred -------------ecCCCCCHHHHHHHHhcCccccceEe-----cCCCccHHHHHHHHhcchhhhhhhhhhhhHHHHHhc
Confidence 47888999999999987554443333 222246777777555332222111122223322211
Q ss_pred CCC-CCCc-ccCCCcceEEeCCCCHHHHHHHHHcCC
Q 011558 420 QDA-NPSL-GFNGQRCQMCLRSDPLHKVMERLANPG 453 (483)
Q Consensus 420 ~~~-~~~~-~~m~~~~~~v~~~~tl~~~~~~m~~~~ 453 (483)
... .... |+.-+.-..++++++-.++++.|.+.-
T Consensus 156 p~~~~~~~EG~l~PdTY~~~~g~~~~~Ii~~mi~~~ 191 (342)
T COG1559 156 PKLDKERLEGYLFPDTYEFTRGTSAEDIIKRMIKAM 191 (342)
T ss_pred CCCcCCCCceeecCceeeeCCCCCHHHHHHHHHHHH
Confidence 100 0011 222345677889999999999987643
No 285
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=31.00 E-value=1.1e+02 Score=32.39 Aligned_cols=132 Identities=14% Similarity=0.160 Sum_probs=85.9
Q ss_pred HHHHhhccccccccCCCCccEEEEccCcCHH-HHHHHHHHcCCCeeeceeCCCCceeEEeeHHHHHHHHHHhccCCCCCC
Q 011558 147 RISSFLSTHTVYELLPDSGKVTALDVNLAVK-QAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 225 (483)
Q Consensus 147 ~~~~fl~~~~~~d~~p~s~kvi~l~~~~~v~-~A~~~l~e~~i~s~PV~d~~~~~~vGilt~~D~i~il~~~~~~~~~l~ 225 (483)
....-|...++.|+|-+...+..++.+..+. +......+.+....||++.+-...+|.+=...++.++... .++
T Consensus 196 ~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~----~~~- 270 (498)
T KOG2118|consen 196 TGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVE----VPL- 270 (498)
T ss_pred hhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccc----ccc-
Confidence 3344556677888898889999999999998 5555666999999999998766555542122222222111 011
Q ss_pred HHHHhhccHHHHHHHHhhhhccccCCCCCCCCCCCeEEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEEec
Q 011558 226 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLAS 305 (483)
Q Consensus 226 ~~~l~~~~i~~~~~~~~~~~~~~~~d~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~~~~ipVvd~d~~~g~~~~l~Giit 305 (483)
....|.+ .+...+..+++++++.+.++.+.+.+.|.+.|... . --+++++
T Consensus 271 -------~~~~v~~----------------~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~---~----~~~~~~~ 320 (498)
T KOG2118|consen 271 -------EPLPVSE----------------SALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRNG---H----VDIFVLT 320 (498)
T ss_pred -------ccccchh----------------hhccccccCCCcccHHHHHHHHhhhhceeEEEecC---C----cceeeEe
Confidence 1111111 12345667889999999999998877777777632 2 3588888
Q ss_pred hhhHHHHHH
Q 011558 306 LSDILKCIC 314 (483)
Q Consensus 306 ~~dIl~~l~ 314 (483)
..++ .-+.
T Consensus 321 l~~~-~~~~ 328 (498)
T KOG2118|consen 321 LEDL-EEVV 328 (498)
T ss_pred ccch-hhhc
Confidence 8887 4443
No 286
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=30.17 E-value=40 Score=24.26 Aligned_cols=22 Identities=36% Similarity=0.844 Sum_probs=13.5
Q ss_pred EEcCCceEEEEEEE---cCeeeeCC
Q 011558 63 CRLPPGHHQYKFYV---DGEWRHDE 84 (483)
Q Consensus 63 ~~l~~g~~~ykf~v---dg~w~~d~ 84 (483)
-.||||.|.++-.+ +|.|..++
T Consensus 34 ~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 34 TNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp ES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EeCCCEEEEEEEEEECCCCCcCccc
Confidence 67999999988776 57787654
No 287
>PLN00115 pollen allergen group 3; Provisional
Probab=29.84 E-value=2.1e+02 Score=23.97 Aligned_cols=50 Identities=16% Similarity=0.321 Sum_probs=33.6
Q ss_pred cCCCceEEEEecc-CCCCCCCCCCcCCCCCCeEEEEEE-cCCceEEEEEEEc-Ceee
Q 011558 28 PNGGRRVSLSGSF-TRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD-GEWR 81 (483)
Q Consensus 28 ~~~~~~V~l~Gsf-~~W~~~~~m~~~~~~~~~~~~~~~-l~~g~~~ykf~vd-g~w~ 81 (483)
..+=.+|.|.++= .+|.. ||.+.- +..|++.-. .+.|-+.+||... |.+.
T Consensus 44 ~~dI~~V~Ik~~g~~~W~~--~M~rsw--GavW~~~s~~pl~GPlS~R~t~~~G~~~ 96 (118)
T PLN00115 44 NVAISEVEIKEKGAKDWVD--DLKESS--TNTWTLKSKAPLKGPFSVRFLVKGGGYR 96 (118)
T ss_pred eCCEEEEEEeecCCCcccC--ccccCc--cceeEecCCCCCCCceEEEEEEeCCCEE
Confidence 3333678998873 36751 688876 678987654 3357899999884 6643
No 288
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.72 E-value=55 Score=35.66 Aligned_cols=26 Identities=31% Similarity=0.845 Sum_probs=21.9
Q ss_pred CceEEEEEEEcCee---eeCCCCCeeeCC
Q 011558 67 PGHHQYKFYVDGEW---RHDENQPHVSGN 92 (483)
Q Consensus 67 ~g~~~ykf~vdg~w---~~d~~~~~~~~~ 92 (483)
.|.|++||.++|+| .+|+..|+..+.
T Consensus 116 aGif~f~~w~~G~W~~VvIDD~LP~~~~~ 144 (612)
T KOG0045|consen 116 AGIFHFRFWQNGEWVEVVIDDRLPTSNGG 144 (612)
T ss_pred ceEEEEEEEeCCeEEEEEeeeecceEcCC
Confidence 58999999999999 467888887764
No 289
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=25.16 E-value=98 Score=32.73 Aligned_cols=37 Identities=30% Similarity=0.566 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 011558 440 DPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 478 (483)
Q Consensus 440 ~tl~~~~~~m~~~~~~~l~VVd~~~~~l~GiIs~~DIl~ 478 (483)
..+..+.+...+.|-.-++|++ ++++.|+|-+.|+++
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~--~~~~~GVI~LkDivK 449 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVE--NGRILGVIYLKDIVK 449 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEE--CCEEEEEEEehhhcc
Confidence 4577788888889988999998 599999999999975
No 290
>PF07483 W_rich_C: Tryptophan-rich Synechocystis species C-terminal domain; InterPro: IPR011121 This entry represents a tryptophan-rich domain found in membrane proteins of Synechocystis and Bradyrhizobium; it is normally found in 2 to 3 copies.
Probab=24.98 E-value=1.4e+02 Score=24.58 Aligned_cols=44 Identities=14% Similarity=0.328 Sum_probs=27.0
Q ss_pred eEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEEEEEcCe
Q 011558 33 RVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGE 79 (483)
Q Consensus 33 ~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~ 79 (483)
..++.|+|.+|++ +.-.. ..+|.|++-..-+--.+.|-...|+.
T Consensus 30 ~~~~~g~~g~W~~-iaA~e--t~~GgyqVlWk~~~~~~~~vW~tDsn 73 (109)
T PF07483_consen 30 QPVVAGQFGGWQP-IAAEE--TSNGGYQVLWKNPGTDQFGVWNTDSN 73 (109)
T ss_pred EEEecCccCCcce-eeeEE--ecCCeeEEEEecCCCCeEEEEEecCC
Confidence 4588999999987 33322 23688888877444334443444443
No 291
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=24.05 E-value=65 Score=27.54 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=32.5
Q ss_pred CCeEEEEEEcCCceEEEEEEEcCeeeeCCCCCee--eCCCCCeeeEEEeccCCCCCC
Q 011558 56 PAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHV--SGNYGVVNCVYIAVPQPDMVP 110 (483)
Q Consensus 56 ~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~~~~~--~~~~g~~nn~~~v~~~~~~~~ 110 (483)
.|.|+ ++++||.|.--..++|.-..-=..-++ ....|.+|.+|.-+.+.+.-|
T Consensus 46 ~G~Ys--~~~epG~Y~V~l~~~g~~~~~vG~I~V~~dS~pGTLN~fL~~~~e~dl~P 100 (134)
T PF08400_consen 46 AGEYS--FDVEPGVYRVTLKVEGRPPVYVGDITVYEDSKPGTLNDFLTAPDEDDLRP 100 (134)
T ss_pred CceEE--EEecCCeEEEEEEECCCCceeEEEEEEecCCCCCcHHHHhhccccccCCH
Confidence 67775 788999999888888762111011122 234688888887534454444
No 292
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=23.75 E-value=43 Score=27.32 Aligned_cols=18 Identities=17% Similarity=0.580 Sum_probs=14.1
Q ss_pred CCceEEEEEEEcCeeeeCC
Q 011558 66 PPGHHQYKFYVDGEWRHDE 84 (483)
Q Consensus 66 ~~g~~~ykf~vdg~w~~d~ 84 (483)
|.|-|+|.|. ||.|+..-
T Consensus 65 p~G~~hf~~~-~~~W~~~r 82 (105)
T cd00503 65 KVGGYHFDYK-NGKWICTR 82 (105)
T ss_pred CCCCccceec-CCEEEECC
Confidence 3477888885 99999874
No 293
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=23.17 E-value=1.4e+02 Score=23.69 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=11.4
Q ss_pred eEEEEEecCC-CceEEEEe
Q 011558 21 VPVRFIWPNG-GRRVSLSG 38 (483)
Q Consensus 21 ~~~~f~~~~~-~~~V~l~G 38 (483)
-.|+|.|... +.++.+.-
T Consensus 25 ~tV~~~n~~~~~Hnv~~~~ 43 (99)
T PF00127_consen 25 DTVTFVNNDSMPHNVVFVA 43 (99)
T ss_dssp EEEEEEEESSSSBEEEEET
T ss_pred CEEEEEECCCCCceEEEec
Confidence 3678888544 66665554
No 294
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=23.10 E-value=48 Score=27.08 Aligned_cols=26 Identities=23% Similarity=0.606 Sum_probs=18.8
Q ss_pred CCeEEEEEEcCCceEEEEEEEcCeeeeCCC
Q 011558 56 PAVFQIICRLPPGHHQYKFYVDGEWRHDEN 85 (483)
Q Consensus 56 ~~~~~~~~~l~~g~~~ykf~vdg~w~~d~~ 85 (483)
...|-.. |.|-|+|.|. +|.|+.+-+
T Consensus 57 ~QIWlas---~sG~~hf~~~-~~~W~~~r~ 82 (105)
T PRK00446 57 HELWLAA---KSGGFHFDYK-DGEWICDRS 82 (105)
T ss_pred hheeEec---CCCCccceec-CCeEEECCC
Confidence 3457554 4788899995 999998743
No 295
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=23.03 E-value=3.6e+02 Score=21.09 Aligned_cols=25 Identities=28% Similarity=0.671 Sum_probs=17.2
Q ss_pred CCeEEEEEEcC---CceEEEEEEE----cCee
Q 011558 56 PAVFQIICRLP---PGHHQYKFYV----DGEW 80 (483)
Q Consensus 56 ~~~~~~~~~l~---~g~~~ykf~v----dg~w 80 (483)
-|.|+.++.++ ||.|...-.. ||.|
T Consensus 57 ~g~F~~tv~~~~~~~~~g~l~v~~~s~~dGs~ 88 (88)
T PF10648_consen 57 WGPFEGTVSFPPPPPGKGTLEVFEDSAKDGSW 88 (88)
T ss_pred ccceEEEEEeCCCCCCceEEEEEEeCCCCCCC
Confidence 57899999988 6765554332 6666
No 296
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=22.34 E-value=92 Score=25.55 Aligned_cols=22 Identities=23% Similarity=0.697 Sum_probs=16.9
Q ss_pred EEcC-CceEEEEEEEcCeeeeCCC
Q 011558 63 CRLP-PGHHQYKFYVDGEWRHDEN 85 (483)
Q Consensus 63 ~~l~-~g~~~ykf~vdg~w~~d~~ 85 (483)
+.=| .|-|+|.|. +|.|+..-+
T Consensus 64 lsSpisG~~hf~~~-~~~W~~~r~ 86 (109)
T PF01491_consen 64 LSSPISGPFHFDYD-DGKWIDTRD 86 (109)
T ss_dssp EEETTTEEEEEEEE-SSSEEETTT
T ss_pred HhcccCCceEEEEc-CCEEEECCC
Confidence 3345 788999998 999997653
No 297
>cd02851 Galactose_oxidase_C_term Galactose oxidase C-terminus domain. Galactose oxidase is an extracellular monomeric enzyme which catalyses the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalysing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminus of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=22.01 E-value=2.6e+02 Score=22.63 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=20.3
Q ss_pred ccCCCCCCCCCCcCCCCCCeEEEEEE-----cCCceEEEEEEEc
Q 011558 39 SFTRWSEPMPMSPSEGCPAVFQIICR-----LPPGHHQYKFYVD 77 (483)
Q Consensus 39 sf~~W~~~~~m~~~~~~~~~~~~~~~-----l~~g~~~ykf~vd 77 (483)
+||.=+..++|.......+.|+++++ .||| |.+=|++|
T Consensus 45 s~~~~QR~v~L~~~~~~~~~~~v~~P~n~~vaPPG-yYmLFvv~ 87 (101)
T cd02851 45 TVNTDQRRIPLTLFSVGGNSYSVQIPSDPGVALPG-YYMLFVMN 87 (101)
T ss_pred cccCCccEEEeeeEecCCCEEEEEcCCCCCcCCCc-CeEEEEEC
Confidence 55555555556433322467776653 2334 55668884
No 298
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=21.76 E-value=92 Score=25.65 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=16.9
Q ss_pred EEEEEEcCCceEEEEEEEcCe
Q 011558 59 FQIICRLPPGHHQYKFYVDGE 79 (483)
Q Consensus 59 ~~~~~~l~~g~~~ykf~vdg~ 79 (483)
.+..+.|++|.|..+|...+.
T Consensus 91 ~~~~v~l~~G~h~i~l~~~~~ 111 (125)
T PF03422_consen 91 VSVSVKLPAGKHTIYLVFNGG 111 (125)
T ss_dssp EEEEEEEESEEEEEEEEESSS
T ss_pred EEEEEeeCCCeeEEEEEEECC
Confidence 456789999999999998653
No 299
>PF04985 Phage_tube: Phage tail tube protein FII; InterPro: IPR006498 This entry is represented by Bacteriophage P2, FII, the major tail tube protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tails of some phage are contractile. These sequences represent the tail tube, or tail core, protein of the contractile tail of phage P2, and homologous proteins from other phage.
Probab=21.27 E-value=3.4e+02 Score=23.91 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=28.1
Q ss_pred eEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEEEEEcCe--eeeCCCC
Q 011558 33 RVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGE--WRHDENQ 86 (483)
Q Consensus 33 ~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~vdg~--w~~d~~~ 86 (483)
.+.+.|.+..|+.. .....+ ....++.+ .-+.||+.+||+ +..|..+
T Consensus 99 ~~~~~G~~~~~~~g-~~k~g~--~~~~~~~~----~v~yyk~~idG~~~~eiD~~n 147 (167)
T PF04985_consen 99 VAVIRGRIKSVDPG-EWKPGE--KTETSIEF----SVTYYKLEIDGKEIIEIDKLN 147 (167)
T ss_pred EEEEEEEEEeeCCc-ccCcCc--cccceEEE----EEEEEEEEECCEEEEEEECcc
Confidence 37788888877652 222222 22233333 257999999998 6665543
No 300
>COG3397 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.24 E-value=6e+02 Score=24.74 Aligned_cols=74 Identities=12% Similarity=0.296 Sum_probs=42.1
Q ss_pred eEEEEEecCCCce------EEEEeccCCCCCCCCCCcCCCC--------------CCeEEEEEEcCCceEEEEEEEcCee
Q 011558 21 VPVRFIWPNGGRR------VSLSGSFTRWSEPMPMSPSEGC--------------PAVFQIICRLPPGHHQYKFYVDGEW 80 (483)
Q Consensus 21 ~~~~f~~~~~~~~------V~l~Gsf~~W~~~~~m~~~~~~--------------~~~~~~~~~l~~g~~~ykf~vdg~w 80 (483)
=|.+|+|...+.+ .||+ =.+|++..||...+-. +..++-.|++|-|+--| .+|=+.|
T Consensus 114 G~~~f~w~~TapH~t~~w~yYiT--K~~wdpnkPLt~~dlEL~p~~~i~~~g~~p~~~~~~~~~iP~~rtGy-~VI~~vW 190 (308)
T COG3397 114 GPQTFVWKATAPHNTAYWKYYIT--KPGWDPNKPLTWDDLELAPFCSITGVGLEPGKNYRHECTIPQDRTGY-HVIYAVW 190 (308)
T ss_pred CceEEEEEeecCCCCcceEEEEC--CCCCCCCCCccHHhcccccceeecccccCCCcceeEEEecCCCCccc-EEEEEEE
Confidence 4678888665433 5553 4589988888764321 12444555565443222 2333678
Q ss_pred eeCCCCCeeeCCCCCeeeEEEeccC
Q 011558 81 RHDENQPHVSGNYGVVNCVYIAVPQ 105 (483)
Q Consensus 81 ~~d~~~~~~~~~~g~~nn~~~v~~~ 105 (483)
...+ ..+..+|++.| .-
T Consensus 191 q~~D-------t~n~Fyn~iDv-~~ 207 (308)
T COG3397 191 QRAD-------TGNAFYNCIDV-NF 207 (308)
T ss_pred Eecc-------CCCcceEEEEE-ec
Confidence 6543 23357899988 53
No 301
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=21.23 E-value=1.8e+02 Score=24.31 Aligned_cols=56 Identities=16% Similarity=0.361 Sum_probs=34.5
Q ss_pred cceEEEEEecCCCc--eEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCc-eEEEEEE
Q 011558 19 ILVPVRFIWPNGGR--RVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFY 75 (483)
Q Consensus 19 ~~~~~~f~~~~~~~--~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~ 75 (483)
..+.+.|+=+...+ +..+.|.+.++.-..++.....|.+ +...++|.+| .|.|++-
T Consensus 32 ~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~-~~~~CPl~~G~~~~y~~~ 90 (123)
T cd00916 32 AKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKN-LGTSCPLSAGEDVTYTLS 90 (123)
T ss_pred EEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccC-CCCCCCCcCCcEEEEEEe
Confidence 34555554444443 4888999998864445544444432 2478999999 4666663
No 302
>PLN02792 oxidoreductase
Probab=21.17 E-value=81 Score=33.84 Aligned_cols=57 Identities=23% Similarity=0.449 Sum_probs=34.8
Q ss_pred CCCCCCCCcCCCCCCeEEEEEEcCCc-eEEEEEEEc---Ce-eeeCCCCCeeeCCCCCeeeEEEe
Q 011558 43 WSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVD---GE-WRHDENQPHVSGNYGVVNCVYIA 102 (483)
Q Consensus 43 W~~~~~m~~~~~~~~~~~~~~~l~~g-~~~ykf~vd---g~-w~~d~~~~~~~~~~g~~nn~~~v 102 (483)
|.. +.+....-.+|+.-+.|+.+|| .|.|+|.+. |. |-|........ .|..--++.+
T Consensus 73 WHG-l~q~~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~--~Gl~G~liI~ 134 (536)
T PLN02792 73 WNG-VHMRKNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKA--AGGYGSLRIY 134 (536)
T ss_pred CCC-cccCCCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcchhhh--cccccceEEe
Confidence 765 3333332236766566999998 699999994 33 98887543333 2444444444
No 303
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=20.87 E-value=61 Score=26.03 Aligned_cols=18 Identities=33% Similarity=0.840 Sum_probs=14.0
Q ss_pred CceEEEEEEEcCeeeeCCC
Q 011558 67 PGHHQYKFYVDGEWRHDEN 85 (483)
Q Consensus 67 ~g~~~ykf~vdg~w~~d~~ 85 (483)
.|-|+|.| ++|.|+..-+
T Consensus 66 sGp~hfd~-~~~~Wi~~r~ 83 (97)
T TIGR03422 66 SGPKRYDY-VNGEWIYLRD 83 (97)
T ss_pred CCCcceee-cCCEEEECCC
Confidence 57788888 4899998643
No 304
>PRK10301 hypothetical protein; Provisional
Probab=20.68 E-value=5.1e+02 Score=21.69 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=32.0
Q ss_pred CCcceEEEEEecCC--CceEEEEeccC-CCCCCCCCCcCCCCCCeEEEEE--EcCCceEEEEEEE---cCe
Q 011558 17 GSILVPVRFIWPNG--GRRVSLSGSFT-RWSEPMPMSPSEGCPAVFQIIC--RLPPGHHQYKFYV---DGE 79 (483)
Q Consensus 17 ~~~~~~~~f~~~~~--~~~V~l~Gsf~-~W~~~~~m~~~~~~~~~~~~~~--~l~~g~~~ykf~v---dg~ 79 (483)
.+..|..+|.=+-. ...+.|.+.=- .|... +.......+..+.+.+ .|++|.|.-+|.| ||.
T Consensus 44 ~P~~V~L~F~e~v~~~~s~i~v~~~~g~~v~~~-~~~~~~~~~~~~~v~l~~~L~~G~YtV~Wrvvs~DGH 113 (124)
T PRK10301 44 APQALTLNFSEGIEPGFSGATITGPKQENIKTL-PAKRNEQDQKQLIVPLADSLKPGTYTVDWHVVSVDGH 113 (124)
T ss_pred CCCEEEEEcCCCccccccEEEEEcCCCCEeccC-CccccCCCCcEEEEECCCCCCCccEEEEEEEEecCCC
Confidence 45555555543322 34577765421 23321 1111122234566665 3789999888886 654
No 305
>TIGR02589 cas_Csd2 CRISPR-associated protein, Csd2 family. This model represents one of two closely related CRISPR-associated proteins that belong to the larger family of TIGR01595. Members are the Csd2 protein of the Dvulg subtype of CRISPR/cas system. CRISPR stands for Clustered Regularly Interspaced Short Palindromic Repeats. The related model is TIGR02590, the Csh2 protein of the Hmari CRISPR subtype.
Probab=20.00 E-value=2.1e+02 Score=27.87 Aligned_cols=73 Identities=11% Similarity=0.121 Sum_probs=45.0
Q ss_pred CCCCCCCCCCCCCCccCCcceEEEEEecCC-----CceEEEEeccCCCCCCCCCCcCCCCCCeEEEEEEcCCceEEEEEE
Q 011558 1 MYNSGLNTGHENSGVVGSILVPVRFIWPNG-----GRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFY 75 (483)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~-----~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~l~~g~~~ykf~ 75 (483)
+||..+..... ..+.+=||.|.|... ..++.++.+|+.=.. .-.+.++..+.+-....+|-|.|.|-|+
T Consensus 111 ~FGavf~~~~~----~~~v~GPVQ~~~a~Sl~pv~~~~~~ITr~~~t~~~--~~~~~~~~~~TmG~k~~V~yglY~~~G~ 184 (284)
T TIGR02589 111 AFGAVMATKGN----AGQVRGPVQITFARSIDPVVIQEHSITRMAVTTEE--EAEKQKGDSRTMGRKHTVDYGLYVAHGF 184 (284)
T ss_pred hhceeeeccCC----CceEecCEEEecceecccceeEEEEEEeeeccccc--ccccccccCCcccceeecCeEEEEEEEE
Confidence 46666655332 245566888988654 344688888874211 1111122245666678889999999998
Q ss_pred EcCe
Q 011558 76 VDGE 79 (483)
Q Consensus 76 vdg~ 79 (483)
|+..
T Consensus 185 IN~~ 188 (284)
T TIGR02589 185 ISAQ 188 (284)
T ss_pred EChh
Confidence 8754
Done!