Query 011560
Match_columns 483
No_of_seqs 186 out of 404
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 02:43:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011560.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011560hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 100.0 2.5E-55 5.4E-60 436.8 6.0 295 165-479 6-344 (351)
2 KOG3849 GDP-fucose protein O-f 97.9 0.00028 6E-09 71.8 13.8 272 156-474 27-365 (386)
3 PF05830 NodZ: Nodulation prot 97.1 0.018 3.9E-07 59.6 15.6 248 158-468 2-290 (321)
4 PLN02232 ubiquinone biosynthes 46.7 34 0.00073 31.4 4.7 99 291-403 48-152 (160)
5 PF14771 DUF4476: Domain of un 42.2 9.1 0.0002 32.4 0.2 37 376-427 39-75 (95)
6 KOG3705 Glycoprotein 6-alpha-L 38.0 52 0.0011 36.2 5.1 129 296-467 340-478 (580)
7 PF00799 Gemini_AL1: Geminivir 37.1 35 0.00075 30.9 3.1 29 374-403 14-42 (114)
8 KOG3111 D-ribulose-5-phosphate 33.5 62 0.0013 32.5 4.4 134 298-452 42-197 (224)
9 PF10892 DUF2688: Protein of u 33.0 32 0.00069 28.0 1.9 16 373-389 42-57 (60)
10 smart00874 B5 tRNA synthetase 28.8 52 0.0011 26.0 2.6 23 370-393 13-35 (71)
11 PF04561 RNA_pol_Rpb2_2: RNA p 27.4 17 0.00036 33.3 -0.6 17 382-398 54-70 (190)
12 PF05577 Peptidase_S28: Serine 27.4 74 0.0016 33.6 4.1 44 178-224 50-107 (434)
13 PRK10556 hypothetical protein; 21.4 56 0.0012 29.4 1.6 19 377-395 3-21 (111)
14 PF03484 B5: tRNA synthetase B 21.2 65 0.0014 26.0 1.8 24 370-394 13-36 (70)
15 PF10365 DUF2436: Domain of un 20.5 32 0.0007 32.7 -0.1 25 188-215 26-50 (161)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=100.00 E-value=2.5e-55 Score=436.77 Aligned_cols=295 Identities=31% Similarity=0.494 Sum_probs=201.9
Q ss_pred EcCCchhHHHHHHHHHHHHHHhCCeEeecccccccccCCCCC-----CCcccChHHHHHHhcccceecccCcccccccCC
Q 011560 165 VSGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWGDESE-----FSDIFDLEHFKSVLANDVRIVSSLPSTHIMTRP 239 (483)
Q Consensus 165 ~nGGLNQqR~~IcDaVaVAriLNATLVlP~L~~~s~W~D~S~-----F~DIFD~dhFI~sL~~dVrIVk~LP~~~~~~~~ 239 (483)
+.||+||||.++++||++|++||+|||||.+.....|+|.++ |+++||+++|++.++.+|.+.+.+|........
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 889999999999999999999999999999999999999988 999999999999999999999999865432111
Q ss_pred c------------------------------ccccCCC-CCChhHHHHHHHHhhhhc------ceEEEeecCcccCCC-C
Q 011560 240 V------------------------------EEKRTPL-HVSPQWIRARYLRRLNRE------GVLLLRGLDSRLSKD-L 281 (483)
Q Consensus 240 ~------------------------------~~~~~p~-~~s~s~~~~~vlp~L~k~------~Vi~l~~~d~RLa~~-l 281 (483)
. ....... +..+.||.++++|.+.++ +++.|.++..++..+ .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 165 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL 165 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence 0 0111121 456677777788888876 999999999999864 8
Q ss_pred ChhhhhhhhhhcccccccchhHHHHHHHHHHHHH-ccCCeeEeecccchhhhhhhccCCCcchhhhHHHHHhhchhhhhc
Q 011560 282 PSDLQKLRCKVAFHALRFAPPILQLGNKLAERMR-SKGPYLSLHLRMEKDVWVRTGCLPGPEYDEMISNERKQRPELLTA 360 (483)
Q Consensus 282 P~~iQrLRCrvnf~ALrF~p~I~~Lg~~LV~Rmr-~~GpyiALHLRfE~DMlAfsgC~~g~e~~E~~~~~R~~~~~~~~~ 360 (483)
+.++|| +|+|+++|+++|++++++|+ .+++|||+|||+|+|| +++|.++. ..+.++..|.. +
T Consensus 166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~~~-~~~~~~~~~~~------~ 228 (351)
T PF10250_consen 166 DRDLQR--------YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEFKG-ERHLLASPRCW------G 228 (351)
T ss_dssp GGGGGG--------G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT-T-----TTTHHHH-------
T ss_pred CccceE--------EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--HhhcccCC-chHHHHHhHhh------c
Confidence 888887 99999999999999999999 8899999999999999 89999965 45555555543 2
Q ss_pred cccCChHHHhhcCCCCCCHHHHHHHHHHhCCCCCcEEEEeecccCCccccccchHhhCCCcccccccCCcccccccccch
Q 011560 361 RSNMTYHERKLAGLCPLNAVEVTRLLKALGAPKIARIYWAGGEPLGGKEALLPLITEFPHLYNKEDLALPGELEPFANKA 440 (483)
Q Consensus 361 ~~~~~~~~~R~~G~CPLTPeEvgl~LraLGf~~~T~IYlAsGeiyGg~~~m~pL~~~FPnl~tKe~Las~eEL~pF~~~s 440 (483)
++..+....+..|.||++|++++.+++++|+.+.|.||||++++|||.+.|.+|++.||++++|+++.+.+|+++|.+
T Consensus 229 ~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 306 (351)
T PF10250_consen 229 KKSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLND-- 306 (351)
T ss_dssp GGGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S-------
T ss_pred cccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccc--
Confidence 344555667778999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hhhhHhHhhhhcCCceeeeCCCCcHHHHHhHhhhhcccc
Q 011560 441 SLMAAIDYIVSENSDIFMPSHGGNMGHAIQVKSLLLLGY 479 (483)
Q Consensus 441 s~lAALDYiVcl~SDVFV~t~~GNma~~V~GhR~~l~g~ 479 (483)
+++|+||++||++||+||+|..++|+.+|+++|++. |.
T Consensus 307 ~~~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~-g~ 344 (351)
T PF10250_consen 307 DQLAMVDQEICSRSDVFIGTCGSTFSSNIARERHYR-GK 344 (351)
T ss_dssp S--HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHS-SS
T ss_pred cchhHHHHHHHhcCCEEEecCcchhHHHhhcccCcC-CC
Confidence 999999999999999999999999999999999986 54
No 2
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00028 Score=71.84 Aligned_cols=272 Identities=19% Similarity=0.278 Sum_probs=149.9
Q ss_pred CCcceEEEE-EcCCchhHHHHHHHHHHHHHHhCCeEeeccc---ccccccCCCCCCCcccChHH------------HHHH
Q 011560 156 DRRKYLLVV-VSGGMNQQRNQIVDAVVIARILGAALVVPIL---QVNVIWGDESEFSDIFDLEH------------FKSV 219 (483)
Q Consensus 156 ~snGYL~V~-~nGGLNQqR~~IcDaVaVAriLNATLVlP~L---~~~s~W~D~S~F~DIFD~dh------------FI~s 219 (483)
..||||+.- |-|-..+|-....-..|.|+.||.|||+|-. ++-.+-+---.|...|.++- |++-
T Consensus 27 DP~GYl~yCPCMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwiEy~~pe~~n~~vpf~~yF~vepl~~YhRVitm~dFm~k 106 (386)
T KOG3849|consen 27 DPAGYLLYCPCMGRFGNQADHFLGSLAFAKALNRTLVLPPWIEYKHPETKNLMVPFEFYFQVEPLAKYHRVITMQDFMKK 106 (386)
T ss_pred CCCccEEEccccccccchHHHHHHHHHHHHHhcccccCCcchhccCCcccccccchhheeecccHhhhhhheeHHHHHHH
Confidence 468998875 8899999999999999999999999999954 22222122357888887753 4444
Q ss_pred hcccceecccCcccc---------ccc---CCccccc-----CCCCCC--hhH-----------------HHHHHHHhh-
Q 011560 220 LANDVRIVSSLPSTH---------IMT---RPVEEKR-----TPLHVS--PQW-----------------IRARYLRRL- 262 (483)
Q Consensus 220 L~~dVrIVk~LP~~~---------~~~---~~~~~~~-----~p~~~s--~s~-----------------~~~~vlp~L- 262 (483)
|..+. -|.+- ... ++.+-.+ .|.|-. .++ .+++.+..+
T Consensus 107 lapth-----wp~~~Rva~c~k~a~qr~pdkp~Ch~KeGNPFGPfWDqfhvsFv~sE~f~~i~Fd~~~~~~~~kW~~kfp 181 (386)
T KOG3849|consen 107 LAPTH-----WPGTPRVAICDKSAAQRSPDKPGCHSKEGNPFGPFWDQFHVSFVGSEYFGDIGFDLNQMGSRKKWLEKFP 181 (386)
T ss_pred hCccc-----CCCCcceeeeehhhhccCCCCCCCcccCCCCCCCchhheEeeeeccccccccccchhhcchHHHHHhhCC
Confidence 43332 11100 000 1111011 111100 000 112223332
Q ss_pred -hhcceEEEeecCcccC---CCCChhhhhhhhhhcccccccchhHHHHHHHHHHHHHccCCeeEeecccchhhhhhhccC
Q 011560 263 -NREGVLLLRGLDSRLS---KDLPSDLQKLRCKVAFHALRFAPPILQLGNKLAERMRSKGPYLSLHLRMEKDVWVRTGCL 338 (483)
Q Consensus 263 -~k~~Vi~l~~~d~RLa---~~lP~~iQrLRCrvnf~ALrF~p~I~~Lg~~LV~Rmr~~GpyiALHLRfE~DMlAfsgC~ 338 (483)
++|-|+.|++.-.... ..+ .||| -||.+.+|.+-|++.+.-=-. .|||++|||...||+-- |.
T Consensus 182 ~eeyPVLAf~gAPA~FPv~~e~~--~lQk--------Yl~WS~r~~e~~k~fI~a~L~-rpfvgiHLRng~DWvra--Ce 248 (386)
T KOG3849|consen 182 SEEYPVLAFSGAPAPFPVKGEVW--SLQK--------YLRWSSRITEQAKKFISANLA-RPFVGIHLRNGADWVRA--CE 248 (386)
T ss_pred cccCceeeecCCCCCCccccccc--cHHH--------HHHHHHHHHHHHHHHHHHhcC-cceeEEEeecCchHHHH--HH
Confidence 3567777775433221 112 3565 488899999999887654222 39999999999999865 77
Q ss_pred CCcc--hhhhHHHHHhhchhhhhccccCChH---HHhhcCCCCCCHHHHHHH----HHHhCCCCCcEEEEeecccCCccc
Q 011560 339 PGPE--YDEMISNERKQRPELLTARSNMTYH---ERKLAGLCPLNAVEVTRL----LKALGAPKIARIYWAGGEPLGGKE 409 (483)
Q Consensus 339 ~g~e--~~E~~~~~R~~~~~~~~~~~~~~~~---~~R~~G~CPLTPeEvgl~----LraLGf~~~T~IYlAsGeiyGg~~ 409 (483)
+-.. ..-+ ....++.-+. ..-....|-=.-+||-.- .+.+| .--.+|+|+.. +.
T Consensus 249 hikd~~~~hl-----------fASpQClGy~~~~gaLt~e~C~Psk~~I~rqik~~v~si~--dakSVfVAsDs----~h 311 (386)
T KOG3849|consen 249 HIKDTTNRHL-----------FASPQCLGYGHHLGALTKEICSPSKQQILRQIKEKVGSIG--DAKSVFVASDS----DH 311 (386)
T ss_pred HhcccCCCcc-----------ccChhhccccccccccchhhhCccHHHHHHHHHHHHhhhc--ccceEEEeccc----hh
Confidence 5311 1001 0001111100 000123554444454322 22344 22379999975 22
Q ss_pred cccchH-hhCCCcccccccCCcccccccccchhhhhHhHhhhhcCCceeeeCCCCcHHHHHhHhhh
Q 011560 410 ALLPLI-TEFPHLYNKEDLALPGELEPFANKASLMAAIDYIVSENSDIFMPSHGGNMGHAIQVKSL 474 (483)
Q Consensus 410 ~m~pL~-~~FPnl~tKe~Las~eEL~pF~~~ss~lAALDYiVcl~SDVFV~t~~GNma~~V~GhR~ 474 (483)
-+.-|. +++|-=+.-. .|+| --+-+|..|.-+||-||++--+.|+.+|.-.|-
T Consensus 312 mi~Eln~aL~~~~i~vh------~l~p------dd~y~dLaIlGqadhFiGNCvSsfsafvKRERD 365 (386)
T KOG3849|consen 312 MIDELNEALKPYEIEVH------RLEP------DDMYTDLAILGQADHFIGNCVSSFSAFVKRERD 365 (386)
T ss_pred hhHHHHHhhcccceeEE------ecCc------ccchhhhhhhcccchhhhhhHHHHHHHHhhhhc
Confidence 222343 3454222222 2222 235679999999999999999999999876663
No 3
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=97.10 E-value=0.018 Score=59.60 Aligned_cols=248 Identities=19% Similarity=0.257 Sum_probs=125.4
Q ss_pred cceEEEEEcCCchhHHHHHHHHHHHHHHhCCeEeecccccccccCCC----CCCCcccChHHHHHHhc--ccceecccCc
Q 011560 158 RKYLLVVVSGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWGDE----SEFSDIFDLEHFKSVLA--NDVRIVSSLP 231 (483)
Q Consensus 158 nGYL~V~~nGGLNQqR~~IcDaVaVAriLNATLVlP~L~~~s~W~D~----S~F~DIFD~dhFI~sL~--~dVrIVk~LP 231 (483)
+.|++.+--+|+|.-=-+++-|-.+|+-.|.||||= |+++ ..|...|++ |-+-.+ ..|+|+-+-+
T Consensus 2 ~r~~~~r~r~g~gd~l~~la~aw~~a~~~~r~l~id-------w~~s~~~~~~f~n~f~~--ffepv~~i~~~~~~~~d~ 72 (321)
T PF05830_consen 2 QRFVVSRRRTGLGDCLWSLAAAWRYAKRTGRTLVID-------WRGSCYLDQPFTNAFPV--FFEPVEDIAGVRVICDDR 72 (321)
T ss_dssp --EEEEE--S-HHHHHHHHHHHHHHHHHHT-EEEEE--------BT-TT-SSTTSBSHHH--HB---SEETTEEEE-SGG
T ss_pred CceEEEeccCCchhHHHHHHHHHHHHHHhCCeEEEE-------cCCceecCCcccccCCc--ccchhhhhcCceeEecch
Confidence 578999999999999999999999999999999995 8875 667776654 444443 2344441111
Q ss_pred ccccccCCcccccCCCCCChhH----------------HHHH-HHH-hhh------hcceEEEeecCcccCCCCChhhhh
Q 011560 232 STHIMTRPVEEKRTPLHVSPQW----------------IRAR-YLR-RLN------REGVLLLRGLDSRLSKDLPSDLQK 287 (483)
Q Consensus 232 ~~~~~~~~~~~~~~p~~~s~s~----------------~~~~-vlp-~L~------k~~Vi~l~~~d~RLa~~lP~~iQr 287 (483)
+.....|-...|.| .+++ -|. .++ ...||.-..+..|=. .+ .
T Consensus 73 --------i~~~~~~g~~fp~~w~~p~~~~~~~pd~qi~re~d~l~~lf~~~~d~~a~~vv~d~c~~~~c~----~~--a 138 (321)
T PF05830_consen 73 --------INQFSFPGPFFPAWWNKPSIDCVYRPDEQIFRERDELRQLFQSQEDHEANTVVCDACLMWRCD----EE--A 138 (321)
T ss_dssp --------GGT----SSEESGGGGS-GGGGS---HHHHHHHHHHHHHHHHSSS--S-SEEEE-S--TTSS-----HH--H
T ss_pred --------hhhhcCCCCcChhHHhCCCcceecCChHHHhhhhHHHHHHhhcccccccchhhhHhhcCCcch----hH--H
Confidence 00001111111111 1111 111 122 356787777655432 22 3
Q ss_pred hhhhhcccccccchhHHHHHHHHHHHHHccCCeeEeecccc--hhhhhhhccCCCcchhhhHHHHHhhchhhhhccccCC
Q 011560 288 LRCKVAFHALRFAPPILQLGNKLAERMRSKGPYLSLHLRME--KDVWVRTGCLPGPEYDEMISNERKQRPELLTARSNMT 365 (483)
Q Consensus 288 LRCrvnf~ALrF~p~I~~Lg~~LV~Rmr~~GpyiALHLRfE--~DMlAfsgC~~g~e~~E~~~~~R~~~~~~~~~~~~~~ 365 (483)
.|| -|..|+-+++|++..+.+.++-=.+..=|++|.|.= +|.+.+ +|.+-+++ +
T Consensus 139 eR~--if~slkpR~eIqarID~iy~ehf~g~~~IGVHVRhGngeD~~~h-~~~~~D~e---~------------------ 194 (321)
T PF05830_consen 139 ERE--IFSSLKPRPEIQARIDAIYREHFAGYSVIGVHVRHGNGEDIMDH-APYWADEE---R------------------ 194 (321)
T ss_dssp HHH--HHHHS-B-HHHHHHHHHHHHHHTTTSEEEEEEE----------------HHHH---H------------------
T ss_pred HHH--HHHhCCCCHHHHHHHHHHHHHHcCCCceEEEEEeccCCcchhcc-CccccCch---H------------------
Confidence 333 488999999999999888777665566899999932 233333 22211100 0
Q ss_pred hHHHhhcCCCCCCHHHH---HHHHHHhCCCCCcEEEEeecccCCccccccchHhhCCCcccccccCCccccccccc----
Q 011560 366 YHERKLAGLCPLNAVEV---TRLLKALGAPKIARIYWAGGEPLGGKEALLPLITEFPHLYNKEDLALPGELEPFAN---- 438 (483)
Q Consensus 366 ~~~~R~~G~CPLTPeEv---gl~LraLGf~~~T~IYlAsGeiyGg~~~m~pL~~~FPnl~tKe~Las~eEL~pF~~---- 438 (483)
+=..| ...++++-...++.|+||+-. .+-++-+++.||.+++-++=..+..-.+.-+
T Consensus 195 ------------~L~~V~~ai~~ak~~~~~k~~~IFLATDS----aeVid~fr~~FPdiiti~k~F~~~~~g~Lhs~~~g 258 (321)
T PF05830_consen 195 ------------ALRQVCTAIDKAKALAPPKPVRIFLATDS----AEVIDQFRKKFPDIITIPKQFPASQAGPLHSAAVG 258 (321)
T ss_dssp ------------HHHHHHHHHHHHHTS--SS-EEEEEEES-----HHHHHHHHHHSTTEE----------------HHHH
T ss_pred ------------HHHHHHHHHHHHHhccCCCCeeEEEecCc----HHHHHHHHHHCCCeEEcccccCCCCCCcCcccccc
Confidence 00111 122345556678999999986 4567899999999888755333222112211
Q ss_pred -chhhhhHhHhhhhcCCceee-eCCCCcHHHH
Q 011560 439 -KASLMAAIDYIVSENSDIFM-PSHGGNMGHA 468 (483)
Q Consensus 439 -~ss~lAALDYiVcl~SDVFV-~t~~GNma~~ 468 (483)
..-..|-+|-+...++|+-| .+-.+.|.+.
T Consensus 259 ~~gg~~ALIDM~LLSrCD~LIr~~ptS~Fsr~ 290 (321)
T PF05830_consen 259 IEGGESALIDMYLLSRCDYLIRFPPTSAFSRY 290 (321)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEESTT-GGGHH
T ss_pred cchHHHHHHHHHHHHhCCeEEEcCCCchhhhH
Confidence 23346889999999999999 6666666654
No 4
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=46.72 E-value=34 Score=31.42 Aligned_cols=99 Identities=12% Similarity=-0.042 Sum_probs=58.8
Q ss_pred hhcccccccchhHHHHHHHHHHHHHccCCeeEeecccchhhhhh----hccCC-CcchhhhHHHHHhhchhhhhccccCC
Q 011560 291 KVAFHALRFAPPILQLGNKLAERMRSKGPYLSLHLRMEKDVWVR----TGCLP-GPEYDEMISNERKQRPELLTARSNMT 365 (483)
Q Consensus 291 rvnf~ALrF~p~I~~Lg~~LV~Rmr~~GpyiALHLRfE~DMlAf----sgC~~-g~e~~E~~~~~R~~~~~~~~~~~~~~ 365 (483)
-++..+|++.++..+.-+.+.+.|+.+|+++-++...+...+.. .-|.. +..-... ...+. .
T Consensus 48 v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------~ 114 (160)
T PLN02232 48 VTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATV-YDLAK------------E 114 (160)
T ss_pred EEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHhhhhHH-hCChH------------H
Confidence 34455788878888888899999999999988877655332221 11110 0000000 00000 0
Q ss_pred hHHH-hhcCCCCCCHHHHHHHHHHhCCCCCcEEEEeecc
Q 011560 366 YHER-KLAGLCPLNAVEVTRLLKALGAPKIARIYWAGGE 403 (483)
Q Consensus 366 ~~~~-R~~G~CPLTPeEvgl~LraLGf~~~T~IYlAsGe 403 (483)
+... ..... +++|+|...+|+..||.+-+.-+++.|-
T Consensus 115 y~yl~~si~~-f~~~~el~~ll~~aGF~~~~~~~~~~g~ 152 (160)
T PLN02232 115 YEYLKYSING-YLTGEELETLALEAGFSSACHYEISGGF 152 (160)
T ss_pred HHhHHHHHHH-CcCHHHHHHHHHHcCCCcceEEECcchH
Confidence 0000 01122 4799999999999999998888888775
No 5
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=42.19 E-value=9.1 Score=32.43 Aligned_cols=37 Identities=14% Similarity=0.295 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHhCCCCCcEEEEeecccCCccccccchHhhCCCccccccc
Q 011560 376 PLNAVEVTRLLKALGAPKIARIYWAGGEPLGGKEALLPLITEFPHLYNKEDL 427 (483)
Q Consensus 376 PLTPeEvgl~LraLGf~~~T~IYlAsGeiyGg~~~m~pL~~~FPnl~tKe~L 427 (483)
++|-.+++-+|+-..|+ +.+|..|+.++|++++++.-
T Consensus 39 ~~T~~Qv~~il~~f~fd---------------~~kl~~lk~l~p~i~D~~n~ 75 (95)
T PF14771_consen 39 CFTCAQVKQILSLFSFD---------------NDKLKALKLLYPYIVDPQNY 75 (95)
T ss_pred ceeHHHHHHHHHHcCCC---------------HHHHHHHHHHhhhccCHHHH
Confidence 39999999999999998 24799999999999999753
No 6
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=38.00 E-value=52 Score=36.17 Aligned_cols=129 Identities=17% Similarity=0.301 Sum_probs=72.1
Q ss_pred ccccchhHHHHHHHHHHHHHc---cCCeeEeecccchhhhhhhccCCCcchhhhHHHHHhhchhhhhccccCChHHHhhc
Q 011560 296 ALRFAPPILQLGNKLAERMRS---KGPYLSLHLRMEKDVWVRTGCLPGPEYDEMISNERKQRPELLTARSNMTYHERKLA 372 (483)
Q Consensus 296 ALrF~p~I~~Lg~~LV~Rmr~---~GpyiALHLRfE~DMlAfsgC~~g~e~~E~~~~~R~~~~~~~~~~~~~~~~~~R~~ 372 (483)
-+|++|..++. |-+-|++ ..|-|+||.|-..-.-.-.+|..-+|..+-.+ .+.
T Consensus 340 L~Rpqp~t~~~---l~~a~k~lg~~~PivGvhvRRTDKVGTEAAfH~~eEYM~~vE-------~~f-------------- 395 (580)
T KOG3705|consen 340 LMRPQPATQEK---LDKALKSLGLDKPIVGVHVRRTDKVGTEAAFHALEEYMEWVE-------IWF-------------- 395 (580)
T ss_pred HhCCChhhHHH---HHHHHHhCCCCCceeeEEEEecccccchhhhhhHHHHHHHHH-------HHH--------------
Confidence 57888877765 4455555 45999999996633322223332222221110 011
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCcEEEEeecccCCccccccchHhhCCCcccccccCCccccc-------ccccchhhhhH
Q 011560 373 GLCPLNAVEVTRLLKALGAPKIARIYWAGGEPLGGKEALLPLITEFPHLYNKEDLALPGELE-------PFANKASLMAA 445 (483)
Q Consensus 373 G~CPLTPeEvgl~LraLGf~~~T~IYlAsGeiyGg~~~m~pL~~~FPnl~tKe~Las~eEL~-------pF~~~ss~lAA 445 (483)
.+|..=|=+-.-+||||+.+.- -+.--+.-|||.. +....|.+ .|...|..---
T Consensus 396 -----------~~le~rg~~~~rRiflAsDDp~----vv~EAk~kYPnYe----~igd~eia~~A~l~nRYTd~sL~GvI 456 (580)
T KOG3705|consen 396 -----------KVLEKRGKPLERRIFLASDDPT----VVPEAKNKYPNYE----VIGDTEIAKTAQLNNRYTDASLMGVI 456 (580)
T ss_pred -----------HHHHHhCCchhheEEEecCCch----hchHhhccCCCcE----EeccHHHHHHhhccccchhhhhhhee
Confidence 1111112233448999999732 3445677899763 22333332 23333445556
Q ss_pred hHhhhhcCCceeeeCCCCcHHH
Q 011560 446 IDYIVSENSDIFMPSHGGNMGH 467 (483)
Q Consensus 446 LDYiVcl~SDVFV~t~~GNma~ 467 (483)
+|..+.+++|..|.|.++..-+
T Consensus 457 lDIh~LS~~d~LVCTFSSQVCR 478 (580)
T KOG3705|consen 457 LDIHILSKVDYLVCTFSSQVCR 478 (580)
T ss_pred eeeeeecccceEEEechHHHHH
Confidence 7999999999999988875443
No 7
>PF00799 Gemini_AL1: Geminivirus Rep catalytic domain; InterPro: IPR022690 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome []. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer []. It is found in association with PF08283 from PFAM. ; GO: 0006260 DNA replication; PDB: 1L5I_A 1L2M_A.
Probab=37.08 E-value=35 Score=30.87 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcEEEEeecc
Q 011560 374 LCPLNAVEVTRLLKALGAPKIARIYWAGGE 403 (483)
Q Consensus 374 ~CPLTPeEvgl~LraLGf~~~T~IYlAsGe 403 (483)
.||||+||+...|++|--+ ....||..++
T Consensus 14 qC~l~ke~~l~~L~~l~~~-~~~~yI~v~r 42 (114)
T PF00799_consen 14 QCSLTKEEALEQLKNLLTP-SNKKYIRVCR 42 (114)
T ss_dssp T----HHHHHHHHHH---S-S-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCc-cCceEEEeec
Confidence 7999999999999999764 3567776553
No 8
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=33.46 E-value=62 Score=32.46 Aligned_cols=134 Identities=21% Similarity=0.313 Sum_probs=72.7
Q ss_pred ccchhHHHHHHHHHHHHHcc---CCeeEeecccch-----hhhhhhccC----CC---cchhhhHHHHHhhchhhhhccc
Q 011560 298 RFAPPILQLGNKLAERMRSK---GPYLSLHLRMEK-----DVWVRTGCL----PG---PEYDEMISNERKQRPELLTARS 362 (483)
Q Consensus 298 rF~p~I~~Lg~~LV~Rmr~~---GpyiALHLRfE~-----DMlAfsgC~----~g---~e~~E~~~~~R~~~~~~~~~~~ 362 (483)
+|+|.| ..|--+|++||+. .+|.-+||=.|. |=+|-.|-. |- +...|++++.|+.--+. .-
T Consensus 42 ~FVpNi-T~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~---G~ 117 (224)
T KOG3111|consen 42 HFVPNI-TFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKV---GL 117 (224)
T ss_pred cccCCc-ccchHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCee---eE
Confidence 456655 4677789999974 479999998774 222322221 11 22355565555432100 00
Q ss_pred cCChHHHhhcCCCCCCHHHHHHHHHHhCCCCCcEEEEeecccCCcccccc-------chHhhCCCcccccccCCcccccc
Q 011560 363 NMTYHERKLAGLCPLNAVEVTRLLKALGAPKIARIYWAGGEPLGGKEALL-------PLITEFPHLYNKEDLALPGELEP 435 (483)
Q Consensus 363 ~~~~~~~R~~G~CPLTPeEvgl~LraLGf~~~T~IYlAsGeiyGg~~~m~-------pL~~~FPnl~tKe~Las~eEL~p 435 (483)
. .=|=||-|....+.. .-|-.+-.+.---|||++.|. -||+-|||+.- --..-+.|
T Consensus 118 a----------lkPgT~Ve~~~~~~~---~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~i----evDGGv~~ 180 (224)
T KOG3111|consen 118 A----------LKPGTPVEDLEPLAE---HVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDI----EVDGGVGP 180 (224)
T ss_pred E----------eCCCCcHHHHHHhhc---cccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceE----EecCCcCc
Confidence 0 225577776554443 223344445445799999986 47888998732 12233444
Q ss_pred cccchhhhhHhHhhhhc
Q 011560 436 FANKASLMAAIDYIVSE 452 (483)
Q Consensus 436 F~~~ss~lAALDYiVcl 452 (483)
=.-+...+|.-++||+-
T Consensus 181 ~ti~~~a~AGAN~iVaG 197 (224)
T KOG3111|consen 181 STIDKAAEAGANMIVAG 197 (224)
T ss_pred chHHHHHHcCCCEEEec
Confidence 22233344555666653
No 9
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=33.03 E-value=32 Score=27.99 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=13.6
Q ss_pred CCCCCCHHHHHHHHHHh
Q 011560 373 GLCPLNAVEVTRLLKAL 389 (483)
Q Consensus 373 G~CPLTPeEvgl~LraL 389 (483)
|-| +||||-+.+++++
T Consensus 42 ~~C-itpEE~~~I~e~~ 57 (60)
T PF10892_consen 42 GDC-ITPEEDREILEAT 57 (60)
T ss_pred hcc-CCHHHHHHHHHHH
Confidence 467 9999999999875
No 10
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=28.80 E-value=52 Score=26.01 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=19.3
Q ss_pred hhcCCCCCCHHHHHHHHHHhCCCC
Q 011560 370 KLAGLCPLNAVEVTRLLKALGAPK 393 (483)
Q Consensus 370 R~~G~CPLTPeEvgl~LraLGf~~ 393 (483)
+..|.. ++++|+..+|+.|||+-
T Consensus 13 ~llG~~-i~~~ei~~~L~~lg~~~ 35 (71)
T smart00874 13 RLLGLD-LSAEEIEEILKRLGFEV 35 (71)
T ss_pred HHHCCC-CCHHHHHHHHHHCCCeE
Confidence 456654 99999999999999974
No 11
>PF04561 RNA_pol_Rpb2_2: RNA polymerase Rpb2, domain 2; InterPro: IPR007642 RNA polymerases catalyse the DNA-dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the lobe domain []. DNA has been demonstrated to bind to the concave surface of the lobe domain, and plays a role in maintaining the transcription bubble. Many of the bacterial members contain large insertions within this domain, a region known as dispensable region 1 (DRI).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_B 3LTI_A 3IYD_C 3LU0_C 2Y0S_R 1SMY_M 3DXJ_M 3AOI_C 2A68_M 1ZYR_C ....
Probab=27.45 E-value=17 Score=33.29 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=12.4
Q ss_pred HHHHHHHhCCCCCcEEE
Q 011560 382 VTRLLKALGAPKIARIY 398 (483)
Q Consensus 382 vgl~LraLGf~~~T~IY 398 (483)
+.++|||||+.++.-||
T Consensus 54 i~ilLrALG~~sd~eI~ 70 (190)
T PF04561_consen 54 IVILLRALGIESDKEII 70 (190)
T ss_dssp HHHHHHHTT--STCHHH
T ss_pred eEEeehhhcCcCccccc
Confidence 67999999998777665
No 12
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=27.36 E-value=74 Score=33.62 Aligned_cols=44 Identities=25% Similarity=0.375 Sum_probs=33.4
Q ss_pred HHHHHHHHhCCeEeecccccccccCCCCCCCcc--------------cChHHHHHHhcccc
Q 011560 178 DAVVIARILGAALVVPILQVNVIWGDESEFSDI--------------FDLEHFKSVLANDV 224 (483)
Q Consensus 178 DaVaVAriLNATLVlP~L~~~s~W~D~S~F~DI--------------FD~dhFI~sL~~dV 224 (483)
-++.+|+-+||.+|+ |+|+ ||+++..|+|. -|.-+||+.++..+
T Consensus 50 ~~~~lA~~~~a~~v~--lEHR-yYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~ 107 (434)
T PF05577_consen 50 FMWELAKEFGALVVA--LEHR-YYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKY 107 (434)
T ss_dssp HHHHHHHHHTEEEEE--E--T-TSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHcCCcEEE--eehh-hhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhh
Confidence 468899999999986 6677 89999888774 57888999988443
No 13
>PRK10556 hypothetical protein; Provisional
Probab=21.41 E-value=56 Score=29.37 Aligned_cols=19 Identities=32% Similarity=0.324 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHhCCCCCc
Q 011560 377 LNAVEVTRLLKALGAPKIA 395 (483)
Q Consensus 377 LTPeEvgl~LraLGf~~~T 395 (483)
|-|.||+.+|..-||..++
T Consensus 3 LRPDEVArVLe~aGF~~D~ 21 (111)
T PRK10556 3 LRPDEVARVLEKAGFTVDV 21 (111)
T ss_pred cChHHHHHHHHhcCceEEE
Confidence 6799999999999998664
No 14
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=21.19 E-value=65 Score=25.99 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=16.2
Q ss_pred hhcCCCCCCHHHHHHHHHHhCCCCC
Q 011560 370 KLAGLCPLNAVEVTRLLKALGAPKI 394 (483)
Q Consensus 370 R~~G~CPLTPeEvgl~LraLGf~~~ 394 (483)
|..|.. ++++|+.-+|+.|||.-+
T Consensus 13 ~~lG~~-i~~~~i~~~L~~lg~~~~ 36 (70)
T PF03484_consen 13 KLLGID-ISPEEIIKILKRLGFKVE 36 (70)
T ss_dssp HHHTS----HHHHHHHHHHTT-EEE
T ss_pred HHhCCC-CCHHHHHHHHHHCCCEEE
Confidence 445664 999999999999999833
No 15
>PF10365 DUF2436: Domain of unknown function (DUF2436); InterPro: IPR018832 Gingipains R and K are endopeptidases with specificity for arginyl and lysyl bonds, respectively. Like other cysteine peptidases, they require reducing conditions for activity. They are maximally active at approximately neutral pH. Gingipains R and K are secreted by the bacterium Porphyromonas gingivalis (Bacteroides gingivalis). The bacterium is a major pathogen in periodontal disease, and the many ways in which the activities of the gingipains may contribute to the disease processes have been reviewed []. These enzymes are also involved in the hemagglutinating activity of the organisms. This entry represents a central region found in gingipain K peptidases, active on lysyl bonds; they belong to the MEROPS peptidase family C25 (gingipain family, clan CD).
Probab=20.53 E-value=32 Score=32.67 Aligned_cols=25 Identities=32% Similarity=0.813 Sum_probs=21.3
Q ss_pred CeEeecccccccccCCCCCCCcccChHH
Q 011560 188 AALVVPILQVNVIWGDESEFSDIFDLEH 215 (483)
Q Consensus 188 ATLVlP~L~~~s~W~D~S~F~DIFD~dh 215 (483)
|++| |..+.+|+|.|.|.-++|.||
T Consensus 26 A~II---Leah~vW~DgsGyQ~LlDaDH 50 (161)
T PF10365_consen 26 ARII---LEAHNVWGDGSGYQMLLDADH 50 (161)
T ss_pred eEEE---EeccccccCCcceEEEEcCCc
Confidence 5554 567789999999999999999
Done!