Query 011560
Match_columns 483
No_of_seqs 186 out of 404
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 10:41:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011560.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011560hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.5 6E-14 2.1E-18 143.4 14.9 295 156-480 20-382 (408)
2 3zy2_A Putative GDP-fucose pro 99.2 3.2E-10 1.1E-14 115.8 15.2 277 156-475 6-346 (362)
3 2hhc_A NODZ, nodulation fucosy 97.8 0.00041 1.4E-08 68.3 16.1 265 157-470 3-294 (330)
4 2de0_X Alpha-(1,6)-fucosyltran 97.8 0.0028 9.5E-08 67.9 22.4 251 157-474 144-418 (526)
5 3l32_A Phosphoprotein; antipar 41.4 12 0.00041 27.8 1.8 26 296-321 2-27 (45)
6 1wgl_A TOLL-interacting protei 35.5 12 0.00043 28.8 1.1 50 407-461 9-58 (59)
7 4ebb_A Dipeptidyl peptidase 2; 21.5 71 0.0024 33.0 4.2 43 179-224 65-123 (472)
8 2g7j_A Putative cytoplasmic pr 19.7 37 0.0013 29.7 1.4 19 377-395 3-21 (124)
9 1l2m_A REP protein; A+B fold, 19.7 95 0.0032 27.1 4.0 29 374-403 17-45 (118)
10 2fr5_A Cytidine deaminase; tet 13.7 1.5E+02 0.0052 26.3 3.9 39 384-427 104-142 (146)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.53 E-value=6e-14 Score=143.44 Aligned_cols=295 Identities=16% Similarity=0.188 Sum_probs=168.6
Q ss_pred CCcceEEEEEc-C-CchhHHHHHHHHHHHHHHhCCe----EeecccccccccCCC------CCCCcccChHHHHHHhccc
Q 011560 156 DRRKYLLVVVS-G-GMNQQRNQIVDAVVIARILGAA----LVVPILQVNVIWGDE------SEFSDIFDLEHFKSVLAND 223 (483)
Q Consensus 156 ~snGYL~V~~n-G-GLNQqR~~IcDaVaVAriLNAT----LVlP~L~~~s~W~D~------S~F~DIFD~dhFI~sL~~d 223 (483)
..++||+-..| | |.|.||...-.|.++|+.||.| ||||-...---|.-. -.|++.||++++ +..
T Consensus 20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~~ 95 (408)
T 4ap5_A 20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NKN 95 (408)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HTT
T ss_pred cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----Hhh
Confidence 46899998864 5 8999999999999999999999 999966432234322 369999999875 345
Q ss_pred ceec------ccC-----cccc-----cc----c---CCc----ccccC-------CCCCChhHHHH-------------
Q 011560 224 VRIV------SSL-----PSTH-----IM----T---RPV----EEKRT-------PLHVSPQWIRA------------- 256 (483)
Q Consensus 224 VrIV------k~L-----P~~~-----~~----~---~~~----~~~~~-------p~~~s~s~~~~------------- 256 (483)
|+|| +++ |..+ .. . ... +.... -+...|.|-..
T Consensus 96 vpVI~meeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~~~ 175 (408)
T 4ap5_A 96 IPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQ 175 (408)
T ss_dssp SCEEEHHHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEEEC
T ss_pred CCeeEHHHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEEEe
Confidence 5555 121 1000 00 0 000 00000 00001223111
Q ss_pred ----HHHHhhhhc---ceEEEeecCcccCCC-CChhhhhhhhhhcccccccchhHHHHHHHHHHHHHccCCeeEeecccc
Q 011560 257 ----RYLRRLNRE---GVLLLRGLDSRLSKD-LPSDLQKLRCKVAFHALRFAPPILQLGNKLAERMRSKGPYLSLHLRME 328 (483)
Q Consensus 257 ----~vlp~L~k~---~Vi~l~~~d~RLa~~-lP~~iQrLRCrvnf~ALrF~p~I~~Lg~~LV~Rmr~~GpyiALHLRfE 328 (483)
.+.|.+.+. .-+-+..+...|+.. -..+...+| ..|+|++.|.+.|++.++..- .++|+++|+|.+
T Consensus 176 ~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L-~~~~~~~h~r~~ 249 (408)
T 4ap5_A 176 GSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHL-NSTDDADRIPFQ 249 (408)
T ss_dssp SBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHH-CCCTTTTTCCCC
T ss_pred ecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHh-Ccccceeecccc
Confidence 112233222 122233333334322 113333333 479999999999999888765 468999999999
Q ss_pred hhhhhhhccCCCcchhhhHHHHHhhchhhhhccccCChHHHhhcCCCCCCHHHHH-HHHHHhCCCCCcEEEEeecccCCc
Q 011560 329 KDVWVRTGCLPGPEYDEMISNERKQRPELLTARSNMTYHERKLAGLCPLNAVEVT-RLLKALGAPKIARIYWAGGEPLGG 407 (483)
Q Consensus 329 ~DMlAfsgC~~g~e~~E~~~~~R~~~~~~~~~~~~~~~~~~R~~G~CPLTPeEvg-l~LraLGf~~~T~IYlAsGeiyGg 407 (483)
.|+... |.......- + ..-.+...+. +.. .-....+| +-++++ .+.+.+.=.+-+.||||+-+ .
T Consensus 250 ~dw~~~--~~~~~~~~~-----~-~y~~~H~Rr~--d~~-~~~~~~~p-s~~~~~~~i~~~~~~~~~~~VyiATD~---~ 314 (408)
T 4ap5_A 250 EDWMKM--KVKLGSALG-----G-PYLGVHLRRK--DFI-WGHRQDVP-SLEGAVRKIRSLMKTHRLDKVFVATDA---V 314 (408)
T ss_dssp SSGGGC--CCCTTCBCC-----E-EEEEEEECCT--TTT-TTTCSSSC-CHHHHHHHHHHHHHHHTCSCEEEEECC---C
T ss_pred hhHhhh--hcccccccC-----C-Cccccccccc--cch-hhhhccCC-CHHHHHHHHHHHHHhcCCCEEEEeCCC---c
Confidence 988764 443210000 0 0000000000 000 00112334 333333 33332222234589999874 4
Q ss_pred cccccchHhhCCCcccccccCCcccccccccchhhhhHhHhhhhcCCceeeeCCCCcHHHHHhHhhhhccccc
Q 011560 408 KEALLPLITEFPHLYNKEDLALPGELEPFANKASLMAAIDYIVSENSDIFMPSHGGNMGHAIQVKSLLLLGYY 480 (483)
Q Consensus 408 ~~~m~pL~~~FPnl~tKe~Las~eEL~pF~~~ss~lAALDYiVcl~SDVFV~t~~GNma~~V~GhR~~l~g~~ 480 (483)
+..+..|++.+|.++.-.. ..+++.++ .....|.||-+||.+||+||+|..++|+..|.=.|-++ |..
T Consensus 315 ~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~-G~~ 382 (408)
T 4ap5_A 315 RKEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREIL-GLD 382 (408)
T ss_dssp HHHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHH-TBC
T ss_pred hhHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhc-CCC
Confidence 4456789999997654322 22344443 24567999999999999999999999999999999875 653
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.17 E-value=3.2e-10 Score=115.77 Aligned_cols=277 Identities=16% Similarity=0.251 Sum_probs=159.8
Q ss_pred CCcceEEEE-EcCCchhHHHHHHHHHHHHHHhCCeEeecccccccccC-CCCCCCcccChHHHHHHhcccceec------
Q 011560 156 DRRKYLLVV-VSGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWG-DESEFSDIFDLEHFKSVLANDVRIV------ 227 (483)
Q Consensus 156 ~snGYL~V~-~nGGLNQqR~~IcDaVaVAriLNATLVlP~L~~~s~W~-D~S~F~DIFD~dhFI~sL~~dVrIV------ 227 (483)
.+||||+-= |-|-..||-....-+.+.||.||.|||||-+-.-..-+ ---.|++-|+++. |+..-|||
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~~~~~~vpf~~yF~v~~----l~~yhrvi~me~Fm 81 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKHPETKMIPFEFLFQVGT----VAKYTRVVTMQEFT 81 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSSSSCEEECHHHHBCHHH----HTTTSCEECHHHHH
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccCCcccccchhheeecch----hhhhceeeeHHHHH
Confidence 469999875 99999999999999999999999999999764321111 1134888888765 33333443
Q ss_pred ccC-----ccccc-----c-c--------CCccccc--CCC-----------CCC----h-----hH----HHHHHHHh-
Q 011560 228 SSL-----PSTHI-----M-T--------RPVEEKR--TPL-----------HVS----P-----QW----IRARYLRR- 261 (483)
Q Consensus 228 k~L-----P~~~~-----~-~--------~~~~~~~--~p~-----------~~s----~-----s~----~~~~vlp~- 261 (483)
++| |.+-. . . .+.+.++ .|+ ..+ + +| +.++....
T Consensus 82 ~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~~~~ 161 (362)
T 3zy2_A 82 KKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWLEKF 161 (362)
T ss_dssp HHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHHHHS
T ss_pred HHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHHHHhC
Confidence 111 11100 0 0 0001110 110 000 0 01 11111111
Q ss_pred -hhhcceEEEeecCcccCCCCChhhhhhhhhhcccccccchhHHHHHHHHHHHHHccCCeeEeecccchhhhhhhccCCC
Q 011560 262 -LNREGVLLLRGLDSRLSKDLPSDLQKLRCKVAFHALRFAPPILQLGNKLAERMRSKGPYLSLHLRMEKDVWVRTGCLPG 340 (483)
Q Consensus 262 -L~k~~Vi~l~~~d~RLa~~lP~~iQrLRCrvnf~ALrF~p~I~~Lg~~LV~Rmr~~GpyiALHLRfE~DMlAfsgC~~g 340 (483)
-.+|-|+.|++.-..- ....+-..|+ .-|+++++|.+.|++.++.--.. ||||+|||-=.|+.-. |.+-
T Consensus 162 p~~~~pVlAf~gaPa~F--Pv~~e~r~Lq-----kYm~WS~~i~~~a~~fI~~~L~r-pyVgIHLR~G~DW~~a--C~hl 231 (362)
T 3zy2_A 162 PSEEYPVLAFSSAPAPF--PSKGKVWSIQ-----KYLRWSSRITEQAKKFISANLAK-PFVAVHLRNDADWVRV--CEHI 231 (362)
T ss_dssp CTTTCSEEEESSCSSCS--SCCGGGGGGG-----GGCCBCHHHHHHHHHHHHHHCCS-SEEEEEECCCHHHHHH--HHTC
T ss_pred CcccCceEeecCCCCCC--CcChhhHhHH-----HhccccHHHHHHHHHHHHHhcCC-CeEEEEEecCCcHHHH--Hhhh
Confidence 1367888887542221 1112211121 36999999999999988885433 9999999999999776 8763
Q ss_pred cch--hhhHHHHHhhchhhh-hc--cccCChHHHhhcCCCCCCHHH----HHHHHHHhCCCCCcEEEEeecccCCccccc
Q 011560 341 PEY--DEMISNERKQRPELL-TA--RSNMTYHERKLAGLCPLNAVE----VTRLLKALGAPKIARIYWAGGEPLGGKEAL 411 (483)
Q Consensus 341 ~e~--~E~~~~~R~~~~~~~-~~--~~~~~~~~~R~~G~CPLTPeE----vgl~LraLGf~~~T~IYlAsGeiyGg~~~m 411 (483)
... ..+.+ .|+-. .. +..++ ...|==+-++ |..+++.++.+ .||||+-. +..+
T Consensus 232 k~~~~~~lfa-----SPQC~Gy~~~~~~lt------~emClPSle~I~rqIk~~vk~~~lk---sVFIATDa----~~~~ 293 (362)
T 3zy2_A 232 DTTTNRPLFA-----SEQCLGEGHHLGTLT------KEICSPSKQQILEQIVEKVGSIGAK---SVFVASDK----DHMI 293 (362)
T ss_dssp CTTTCCCCTT-----THHHHCGGGTTCCCC------HHHHSCCHHHHHHHHHHHHHHHTCS---EEEEEESS----CCCH
T ss_pred ccccCccccc-----CCcccCCcccCcccc------hhccCCCHHHHHHHHHHHHHhcCCc---EEEEecCC----HHHH
Confidence 110 00000 01000 00 00011 0134223333 34556666654 99999974 3457
Q ss_pred cchHhhCCCcccccccCCcccccccccchhhhhHhHhhhhcCCceeeeCCCCcHHHHHhHhhhh
Q 011560 412 LPLITEFPHLYNKEDLALPGELEPFANKASLMAAIDYIVSENSDIFMPSHGGNMGHAIQVKSLL 475 (483)
Q Consensus 412 ~pL~~~FPnl~tKe~Las~eEL~pF~~~ss~lAALDYiVcl~SDVFV~t~~GNma~~V~GhR~~ 475 (483)
+-|+++|+....+ +.+ +.| -.|+||-+||.+||+||+|..++|...|.=.|--
T Consensus 294 ~ELk~~L~~~~v~--vv~---~~p------e~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi 346 (362)
T 3zy2_A 294 DEINEALKPYEIE--AHR---QEP------DDMYTSLAIMGRADLFVGNCVSTFSHIVKRERDH 346 (362)
T ss_dssp HHHHHHHGGGTCC--EEC---CSS------CCHHHHHHHHHHSSEEEECTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhccCce--EEE---eCC------chhHHHHHHHHhCCEeecCccccccHHHHHHHHh
Confidence 7888888752111 111 111 1799999999999999999999999999988864
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.83 E-value=0.00041 Score=68.34 Aligned_cols=265 Identities=12% Similarity=0.135 Sum_probs=126.3
Q ss_pred CcceEEEEEcCCchhHHHHHHHHHHHHHHhCCeEeecccccccccCCCCCCCcccChHHHHHHhccc--ceeccc-Cccc
Q 011560 157 RRKYLLVVVSGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWGDESEFSDIFDLEHFKSVLAND--VRIVSS-LPST 233 (483)
Q Consensus 157 snGYL~V~~nGGLNQqR~~IcDaVaVAriLNATLVlP~L~~~s~W~D~S~F~DIFD~dhFI~sL~~d--VrIVk~-LP~~ 233 (483)
+.+||++...|||.+|=-+++.|.++|...|.+|+|--.. ..|-. ..|.+.| +..|. ..++- ..+... .|..
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~~--~~~~~~f-p~~F~-~v~~~~~~~~~~~~~~~~ 77 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYVE--QPFSNAF-PAFFE-PVEDIAGVPVICDDRVNQ 77 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTCS--STTSBSH-HHHBC-CCSEETTEEEECSGGGGT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccCC--CCccccC-ccccc-chhhhcccceeccccccc
Confidence 4579999999999999999999999999999998886443 22221 2355556 22232 11100 000000 0000
Q ss_pred ccccCCc---ccccCCCCCChhHH--HHHHHH-------hhh--hcc-eEEEeecCcccCCCCChhhhhhhhhhcccccc
Q 011560 234 HIMTRPV---EEKRTPLHVSPQWI--RARYLR-------RLN--REG-VLLLRGLDSRLSKDLPSDLQKLRCKVAFHALR 298 (483)
Q Consensus 234 ~~~~~~~---~~~~~p~~~s~s~~--~~~vlp-------~L~--k~~-Vi~l~~~d~RLa~~lP~~iQrLRCrvnf~ALr 298 (483)
.....+. .-...+.. ..+ .+.+.+ .+. .+. ...+.+- .-+-...-.+ .-..-|.-|+
T Consensus 78 ~~~~~~~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~w~~~~~----~~~~i~~yl~ 149 (330)
T 2hhc_A 78 LSFPGPFFPRWWNRPSID---CINRPDEQIFRERDELTELFQAREDSEANTIVCD-ACLMWRCSEE----AERLIFRNIK 149 (330)
T ss_dssp CCCCSSEESGGGGSCGGG---GSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEEC-SCCTTSSCHH----HHHHHHHHSC
T ss_pred ccCCCCcCchhhhccccc---cccChHHhhhhhhhhhhhhhhhhhccCCCeEEcc-cccccchhhh----hHHHHHhcCC
Confidence 0000000 00000000 000 122221 111 111 0122220 0010001011 1123356789
Q ss_pred cchhHHHHHHHHHHHHHccCCeeEeecccchhhhhhhccCCCcchhhhHHHHHhhchhhhhccccCChHHHhhcCCCCCC
Q 011560 299 FAPPILQLGNKLAERMRSKGPYLSLHLRMEKDVWVRTGCLPGPEYDEMISNERKQRPELLTARSNMTYHERKLAGLCPLN 378 (483)
Q Consensus 299 F~p~I~~Lg~~LV~Rmr~~GpyiALHLRfE~DMlAfsgC~~g~e~~E~~~~~R~~~~~~~~~~~~~~~~~~R~~G~CPLT 378 (483)
++++|++..+.+.+.+-...++|+||.|.=.+. ..|.++....+. .||
T Consensus 150 p~~~i~~~i~~~~~~~~~~~~~VGVHIRrgD~~---~~~~~~~~~~~~---------------------------~~~-- 197 (330)
T 2hhc_A 150 LRSEIRARIDALYEEHFSGHSIIGVHVRHGNGE---DIMEHAPYWADS---------------------------ELA-- 197 (330)
T ss_dssp BCHHHHHHHHHHHHHHTTTSEEEEEEECC---------------CHHH---------------------------HHH--
T ss_pred ccHHHHHHHHHHHHHhccCCceEEEEEecCCCC---cccccCcchHHH---------------------------hHH--
Confidence 999999999888876544569999999955321 123221100000 011
Q ss_pred HHHHHHHHHHh--CCC-CCcEEEEeecccCCccccccchHhhCCCccccc-ccCCc--ccc-ccccc-chhhhhHhHhhh
Q 011560 379 AVEVTRLLKAL--GAP-KIARIYWAGGEPLGGKEALLPLITEFPHLYNKE-DLALP--GEL-EPFAN-KASLMAAIDYIV 450 (483)
Q Consensus 379 PeEvgl~LraL--Gf~-~~T~IYlAsGeiyGg~~~m~pL~~~FPnl~tKe-~Las~--eEL-~pF~~-~ss~lAALDYiV 450 (483)
-+++-.-++.+ -.+ ++..||||+-+. ..++-|++.||++.+-. .+... ..+ .+..+ ...+.|.+|.+.
T Consensus 198 l~~~~~~i~~~~~~~~~~~~~vfvaSDd~----~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~Dm~L 273 (330)
T 2hhc_A 198 LHQVCMAIRKAKALSYPKPVKVFLCTDSA----QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGGASALIDMYL 273 (330)
T ss_dssp HHHHHHHHHHHHTSCCSSCEEEEEEESCH----HHHHHHHHHSTTEECCCC-----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCceEEEEEeCCH----HHHHHHHHHcCCcccccceeecccccccccCchhhccchHHHHHHHH
Confidence 11111111111 112 467999999984 24667889999743321 11100 000 01101 235678999999
Q ss_pred hcCCceee-eCCCCcHHHHHh
Q 011560 451 SENSDIFM-PSHGGNMGHAIQ 470 (483)
Q Consensus 451 cl~SDVFV-~t~~GNma~~V~ 470 (483)
..++|.+| ++..++|+...+
T Consensus 274 LS~cd~~I~~~~~STFs~~aa 294 (330)
T 2hhc_A 274 LARCATVIRFPPTSAFTRYAR 294 (330)
T ss_dssp HTTCSEEEEESTTCGGGHHHH
T ss_pred HHcCCeeEECCCCCCHHHHHH
Confidence 99999999 655788877655
No 4
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.78 E-value=0.0028 Score=67.85 Aligned_cols=251 Identities=15% Similarity=0.178 Sum_probs=139.1
Q ss_pred CcceEEEEE--cCCchhHHHHHHHHHHHHHHhCCeEeecccccccccCC-CCCCCcccChHHHHHHhcccceecccCccc
Q 011560 157 RRKYLLVVV--SGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWGD-ESEFSDIFDLEHFKSVLANDVRIVSSLPST 233 (483)
Q Consensus 157 snGYL~V~~--nGGLNQqR~~IcDaVaVAriLNATLVlP~L~~~s~W~D-~S~F~DIFD~dhFI~sL~~dVrIVk~LP~~ 233 (483)
+..||+... ..|+..+-..++=+..+|..+|.|||+-.=. |.- ...|+++|+. +...+.- . |.
T Consensus 144 ~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P------~s~~C~~--~-~~- 209 (526)
T 2de0_X 144 KAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP------VSETCTD--R-SG- 209 (526)
T ss_dssp GSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC------SCSSCCC--C-CC-
T ss_pred CCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC------cCccccC--C-Cc-
Confidence 347888876 5799999999999999999999999994322 432 2468888863 1111110 0 00
Q ss_pred ccccCCcccccCCCCCChhHHHHHHHHhhhhcceEEEeecC--cc---cCC-CCChh----hhhhh-------hh-hccc
Q 011560 234 HIMTRPVEEKRTPLHVSPQWIRARYLRRLNREGVLLLRGLD--SR---LSK-DLPSD----LQKLR-------CK-VAFH 295 (483)
Q Consensus 234 ~~~~~~~~~~~~p~~~s~s~~~~~vlp~L~k~~Vi~l~~~d--~R---La~-~lP~~----iQrLR-------Cr-vnf~ 295 (483)
.....|-.... -..+.||.+.-.+ ++ ... .+|.+ ++++. |. +.-.
T Consensus 210 --------------~~~~~w~~~~~---~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~q~~~y 272 (526)
T 2de0_X 210 --------------ISTGHWSGEVK---DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKY 272 (526)
T ss_dssp --------------SCCCBCCCTTG---GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHHHHHHH
T ss_pred --------------cccCCCCCccc---CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHHHHHHHH
Confidence 00001211000 1234555433221 11 111 35543 23332 00 0111
Q ss_pred ccccchhHHHHHHHHHHHHHccCCeeEeecccchhhhhhhccCCCcchhhhHHHHHhhchhhhhccccCChHHHhhcCCC
Q 011560 296 ALRFAPPILQLGNKLAERMRSKGPYLSLHLRMEKDVWVRTGCLPGPEYDEMISNERKQRPELLTARSNMTYHERKLAGLC 375 (483)
Q Consensus 296 ALrF~p~I~~Lg~~LV~Rmr~~GpyiALHLRfE~DMlAfsgC~~g~e~~E~~~~~R~~~~~~~~~~~~~~~~~~R~~G~C 375 (483)
-+|++++|++..+.+.+.+.-.+|.|+||.|-= |-++.-. .+.+ -++ +++. .
T Consensus 273 l~rP~~~i~~~I~~~~~~l~~~~piVGVHIRrG-Dk~~~E~-~~~~-~~~---Y~~~-v--------------------- 324 (526)
T 2de0_X 273 LIRPQPWLEKEIEEATKKLGFKHPVIGVHVRRT-DKVGTEA-AFHP-IEE---YMVH-V--------------------- 324 (526)
T ss_dssp HTCBCHHHHHHHHHHHHHHTCCSSEEEEEECCC------CC-CSCS-HHH---HHHH-H---------------------
T ss_pred HcCCCHHHHHHHHHHHHHhCCCCCEEEEEEeCC-CCCcccc-ccCC-HHH---HHHH-H---------------------
Confidence 488999999999999988866789999999954 3222100 0000 000 1100 0
Q ss_pred CCCHHHHHHHHHHhCCCCCcEEEEeecccCCccccccchHhhCCCc--ccccccCC-cccccccccchhhhhHhHhhhhc
Q 011560 376 PLNAVEVTRLLKALGAPKIARIYWAGGEPLGGKEALLPLITEFPHL--YNKEDLAL-PGELEPFANKASLMAAIDYIVSE 452 (483)
Q Consensus 376 PLTPeEvgl~LraLGf~~~T~IYlAsGeiyGg~~~m~pL~~~FPnl--~tKe~Las-~eEL~pF~~~ss~lAALDYiVcl 452 (483)
++.-..|+....+..+.||||+.+ ...++-+++.||+. ++-..... .+.-..+...+-..+.+|.++.+
T Consensus 325 ----~~~~~~l~~~~~~~~~~ifLATDD----p~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs 396 (526)
T 2de0_X 325 ----EEHFQLLARRMQVDKKRVYLATDD----PSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLS 396 (526)
T ss_dssp ----HHHHHHHHTTSCCSSCEEEEEESC----HHHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHhhcCCCCCeEEEEcCC----HHHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHh
Confidence 000011222245778899999987 33455677789975 32222111 11111222223467899999999
Q ss_pred CCceeeeCCCCcHHHHHhHhhh
Q 011560 453 NSDIFMPSHGGNMGHAIQVKSL 474 (483)
Q Consensus 453 ~SDVFV~t~~GNma~~V~GhR~ 474 (483)
++|+||+|.++|+++++...|.
T Consensus 397 ~cd~~Vgt~sS~~srla~~l~~ 418 (526)
T 2de0_X 397 QADFLVCTFSSQVCRVAYEIMQ 418 (526)
T ss_dssp HSSEEEECTTSHHHHHHHHHHT
T ss_pred cCCeeecCCCCHHHHHHHHHhc
Confidence 9999999999999999876654
No 5
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=41.44 E-value=12 Score=27.83 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=21.3
Q ss_pred ccccchhHHHHHHHHHHHHHccCCee
Q 011560 296 ALRFAPPILQLGNKLAERMRSKGPYL 321 (483)
Q Consensus 296 ALrF~p~I~~Lg~~LV~Rmr~~Gpyi 321 (483)
++-|+.-+.++|.++|.||+++..|.
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKtGe~Ff 27 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRSGERFL 27 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CccHHHHHHHHHHHHHHHHHccccHH
Confidence 45577889999999999999876554
No 6
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=35.53 E-value=12 Score=28.80 Aligned_cols=50 Identities=26% Similarity=0.353 Sum_probs=34.1
Q ss_pred ccccccchHhhCCCcccccccCCcccccccccchhhhhHhHhhhhcCCceeeeCC
Q 011560 407 GKEALLPLITEFPHLYNKEDLALPGELEPFANKASLMAAIDYIVSENSDIFMPSH 461 (483)
Q Consensus 407 g~~~m~pL~~~FPnl~tKe~Las~eEL~pF~~~ss~lAALDYiVcl~SDVFV~t~ 461 (483)
-++.++-|++|||++ +++.+-. -|. ++..+..+|||-...+..+-|=|++
T Consensus 9 ~ee~l~~L~emFP~l-d~~~I~~--vL~--a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNM-DQEVIRS--VLE--AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp CHHHHHHHHHHCSSS-CHHHHHH--HHT--TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred CHHHHHHHHHHCCCC-CHHHHHH--HHH--HcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 356688999999987 4443311 111 2467899999999988887776554
No 7
>4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A*
Probab=21.51 E-value=71 Score=33.03 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=33.7
Q ss_pred HHHHHHHhCCeEeecccccccccCCCCCCCcc----------------cChHHHHHHhcccc
Q 011560 179 AVVIARILGAALVVPILQVNVIWGDESEFSDI----------------FDLEHFKSVLANDV 224 (483)
Q Consensus 179 aVaVAriLNATLVlP~L~~~s~W~D~S~F~DI----------------FD~dhFI~sL~~dV 224 (483)
++.+|+..||.+|+ ++|+ ||+++..|++. -|.-+||+.++.+.
T Consensus 65 ~~~lA~~~~a~~v~--lEHR-yYG~S~P~~~~st~~~nL~yLt~eQALaD~a~fi~~~k~~~ 123 (472)
T 4ebb_A 65 VAELAAERGALLVF--AEHR-YYGKSLPFGAQSTQRGHTELLTVEQALADFAELLRALRRDL 123 (472)
T ss_dssp HHHHHHHHTCEEEE--ECCT-TSTTCCTTGGGGGSTTSCTTCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCeEEE--Eecc-cccCCcCCCCCCccccccccCCHHHHHHHHHHHHHHHHhhc
Confidence 45689999999987 5677 99999988653 45678999887653
No 8
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=19.74 E-value=37 Score=29.75 Aligned_cols=19 Identities=32% Similarity=0.324 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHhCCCCCc
Q 011560 377 LNAVEVTRLLKALGAPKIA 395 (483)
Q Consensus 377 LTPeEvgl~LraLGf~~~T 395 (483)
|-|.||+.+|...||..+.
T Consensus 3 LRPDEVArVLEk~GF~~D~ 21 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVDV 21 (124)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 6799999999999998654
No 9
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=19.73 E-value=95 Score=27.12 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcEEEEeecc
Q 011560 374 LCPLNAVEVTRLLKALGAPKIARIYWAGGE 403 (483)
Q Consensus 374 ~CPLTPeEvgl~LraLGf~~~T~IYlAsGe 403 (483)
.||||+||+...|+.|--+.+ ..|+...+
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i~r 45 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeeehh
Confidence 799999999999999885543 55554443
No 10
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=13.73 E-value=1.5e+02 Score=26.34 Aligned_cols=39 Identities=18% Similarity=0.373 Sum_probs=30.6
Q ss_pred HHHHHhCCCCCcEEEEeecccCCccccccchHhhCCCccccccc
Q 011560 384 RLLKALGAPKIARIYWAGGEPLGGKEALLPLITEFPHLYNKEDL 427 (483)
Q Consensus 384 l~LraLGf~~~T~IYlAsGeiyGg~~~m~pL~~~FPnl~tKe~L 427 (483)
.+|..+| .++.||++..+ |+.....|.++.|.-++.++|
T Consensus 104 q~l~E~~--~~~~v~~~~~~---g~~~~~~l~eLLP~~F~~~~l 142 (146)
T 2fr5_A 104 QVMREFG--TDWAVYMTKPD---GTFVVRTVQELLPASFGPEDL 142 (146)
T ss_dssp HHHHHTC--SSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGG
T ss_pred HHHHHhC--CCCEEEEECCC---CCEEEEEHHHhCCCCCChHHH
Confidence 4667777 78999999875 444456899999998888877
Done!