Query 011560
Match_columns 483
No_of_seqs 186 out of 404
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 10:41:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011560.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011560hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ihoa2 d.3.1.18 (A:156-293) A 46.2 1.8 0.00013 36.5 -0.3 36 189-224 31-71 (138)
2 d1vhca_ c.1.10.1 (A:) Hypothet 34.6 69 0.0051 28.0 8.7 41 377-421 115-155 (212)
3 d1wgla_ a.5.2.4 (A:) Toll-inte 32.1 7.1 0.00052 28.7 1.1 50 407-461 9-58 (59)
4 d1l5ia_ d.89.1.4 (A:) DNA-bind 26.9 26 0.0019 28.7 3.9 29 374-403 17-45 (118)
5 d1vjna_ d.157.1.4 (A:) Hypothe 20.7 49 0.0036 28.1 4.8 55 160-222 130-184 (209)
6 d1oqya2 a.5.2.1 (A:317-360) DN 19.7 7.1 0.00052 27.3 -0.9 26 378-403 1-30 (44)
7 d2g7ja1 d.198.5.1 (A:1-112) Pu 19.3 22 0.0016 28.7 1.8 18 377-394 3-20 (112)
8 d1jjcb2 a.6.1.1 (B:400-474) Do 17.7 37 0.0027 25.0 2.7 22 370-392 14-35 (75)
9 d1vpqa_ c.1.32.1 (A:) Hypothet 15.7 90 0.0066 27.7 5.5 27 251-277 148-174 (260)
10 d2fr5a1 c.97.1.1 (A:11-146) mo 14.5 54 0.0039 26.7 3.3 40 384-428 94-133 (136)
No 1
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=46.22 E-value=1.8 Score=36.46 Aligned_cols=36 Identities=28% Similarity=0.472 Sum_probs=30.1
Q ss_pred eEeecccccccccCCC-----CCCCcccChHHHHHHhcccc
Q 011560 189 ALVVPILQVNVIWGDE-----SEFSDIFDLEHFKSVLANDV 224 (483)
Q Consensus 189 TLVlP~L~~~s~W~D~-----S~F~DIFD~dhFI~sL~~dV 224 (483)
-||+|...-+++|+++ --=+.|||-|.|--..|.-|
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 3999999999999996 34568999999988877654
No 2
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}
Probab=34.60 E-value=69 Score=28.01 Aligned_cols=41 Identities=20% Similarity=0.378 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHhCCCCCcEEEEeecccCCccccccchHhhCCCc
Q 011560 377 LNAVEVTRLLKALGAPKIARIYWAGGEPLGGKEALLPLITEFPHL 421 (483)
Q Consensus 377 LTPeEvgl~LraLGf~~~T~IYlAsGeiyGg~~~m~pL~~~FPnl 421 (483)
+||.|+...+ .+|++ .|=+=-.+..||-..+..|+.-||++
T Consensus 115 ~TpsEi~~A~-~~G~~---~vK~FPA~~~gG~~~lkal~~p~p~~ 155 (212)
T d1vhca_ 115 NNPMAIEIAL-EMGIS---AVKFFPAEASGGVKMIKALLGPYAQL 155 (212)
T ss_dssp CSHHHHHHHH-HTTCC---EEEETTTTTTTHHHHHHHHHTTTTTC
T ss_pred CCHHHHHHHH-HCCCC---EEEEccccccchHHHHHHHhccccCC
Confidence 7999986443 34544 33333345678888999999999975
No 3
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.07 E-value=7.1 Score=28.67 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=35.0
Q ss_pred ccccccchHhhCCCcccccccCCcccccccccchhhhhHhHhhhhcCCceeeeCC
Q 011560 407 GKEALLPLITEFPHLYNKEDLALPGELEPFANKASLMAAIDYIVSENSDIFMPSH 461 (483)
Q Consensus 407 g~~~m~pL~~~FPnl~tKe~Las~eEL~pF~~~ss~lAALDYiVcl~SDVFV~t~ 461 (483)
-++.+.-|++|||++- ++.+-. -|+. +..+..+|+|=..-..-+.|-|++
T Consensus 9 ~Ee~i~~LkeMFP~~D-~~vI~~--VL~a--~~G~vd~aid~LL~Msd~~~gp~s 58 (59)
T d1wgla_ 9 SEEDLKAIQDMFPNMD-QEVIRS--VLEA--QRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp CHHHHHHHHHHCSSSC-HHHHHH--HHTT--TTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred cHHHHHHHHHHCCCCC-HHHHHH--HHHH--cCCCHHHHHHHHHhcCCCCcCCCC
Confidence 4567889999999883 333311 1222 567889999998888888877665
No 4
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=26.88 E-value=26 Score=28.68 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcEEEEeecc
Q 011560 374 LCPLNAVEVTRLLKALGAPKIARIYWAGGE 403 (483)
Q Consensus 374 ~CPLTPeEvgl~LraLGf~~~T~IYlAsGe 403 (483)
+||||+||+...|+.|--+.+. .||..++
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~r 45 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEcc
Confidence 7999999999999998766554 4655443
No 5
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=20.70 E-value=49 Score=28.12 Aligned_cols=55 Identities=24% Similarity=0.403 Sum_probs=34.3
Q ss_pred eEEEEEcCCchhHHHHHHHHHHHHHHhCCeEeecccccccccCCCCCCCcccChHHHHHHhcc
Q 011560 160 YLLVVVSGGMNQQRNQIVDAVVIARILGAALVVPILQVNVIWGDESEFSDIFDLEHFKSVLAN 222 (483)
Q Consensus 160 YL~V~~nGGLNQqR~~IcDaVaVAriLNATLVlP~L~~~s~W~D~S~F~DIFD~dhFI~sL~~ 222 (483)
.+++.+ ||--. ..--+|+.+|+.|++-.|||.= |+.....| ++=..|.|++.++.
T Consensus 130 va~lpi-gg~~~--m~~~ea~~~~~~l~pk~viP~H----~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 130 VLLVPV-GGTYT--IGPKEAKEVADLLNAKVIIPMH----YKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp EEEEEC-CSSSS--CCHHHHHHHHHHTTCSEEEEES----CCCSSCCT-TCCCTHHHHTTSSC
T ss_pred EEEEec-CCccc--cCHHHHHHHHHHhCCCEEEEec----cCCccccc-CcCCHHHHHHHhhh
Confidence 355554 44221 3356899999999999999952 22222333 45557888887664
No 6
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.72 E-value=7.1 Score=27.26 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=18.6
Q ss_pred CHHHHH--HHHHHhCCCCCc--EEEEeecc
Q 011560 378 NAVEVT--RLLKALGAPKIA--RIYWAGGE 403 (483)
Q Consensus 378 TPeEvg--l~LraLGf~~~T--~IYlAsGe 403 (483)
||+|.. .=|.+|||+++. .+|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 455544 447899999988 56888765
No 7
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=19.32 E-value=22 Score=28.67 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHhCCCCC
Q 011560 377 LNAVEVTRLLKALGAPKI 394 (483)
Q Consensus 377 LTPeEvgl~LraLGf~~~ 394 (483)
|-|.||+.+|+.-||..+
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 679999999999999754
No 8
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=17.66 E-value=37 Score=24.99 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.0
Q ss_pred hhcCCCCCCHHHHHHHHHHhCCC
Q 011560 370 KLAGLCPLNAVEVTRLLKALGAP 392 (483)
Q Consensus 370 R~~G~CPLTPeEvgl~LraLGf~ 392 (483)
|..|.. ++++|+...|+.|||.
T Consensus 14 ~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 14 RLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHhCCC-CCHHHHHHHHHHcCCc
Confidence 456666 9999999999999996
No 9
>d1vpqa_ c.1.32.1 (A:) Hypothetical protein TM1631 {Thermotoga maritima [TaxId: 2336]}
Probab=15.68 E-value=90 Score=27.67 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=20.7
Q ss_pred hhHHHHHHHHhhhhcceEEEeecCccc
Q 011560 251 PQWIRARYLRRLNREGVLLLRGLDSRL 277 (483)
Q Consensus 251 ~s~~~~~vlp~L~k~~Vi~l~~~d~RL 277 (483)
++|+.+.+...|+++||.++.--..++
T Consensus 148 ~sW~~~~~~~~L~~~~v~~V~~D~p~~ 174 (260)
T d1vpqa_ 148 YSWDREETYEFLRNHGITFVVVDEPKL 174 (260)
T ss_dssp GGGCSHHHHHHHHHHTCEEEEEECCCC
T ss_pred chhccHHHHHHHHHcCCEEEEECCCCC
Confidence 369999999999999998776433333
No 10
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.55 E-value=54 Score=26.71 Aligned_cols=40 Identities=15% Similarity=0.294 Sum_probs=31.1
Q ss_pred HHHHHhCCCCCcEEEEeecccCCccccccchHhhCCCcccccccC
Q 011560 384 RLLKALGAPKIARIYWAGGEPLGGKEALLPLITEFPHLYNKEDLA 428 (483)
Q Consensus 384 l~LraLGf~~~T~IYlAsGeiyGg~~~m~pL~~~FPnl~tKe~La 428 (483)
.+|..+ ..++.||+...+ |+.....|+++.|.-+++++|-
T Consensus 94 Q~l~E~--~~~~~i~~~~~~---~~~~~~tl~eLLP~~F~~~~L~ 133 (136)
T d2fr5a1 94 QVMREF--GTDWAVYMTKPD---GTFVVRTVQELLPASFGPEDLQ 133 (136)
T ss_dssp HHHHHT--CSSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGGT
T ss_pred HHHHhh--CCCceEEEECCC---CCEEEeEHHHhCcCCCChHHhC
Confidence 455554 468999998775 5556678999999999999874
Done!