Query 011561
Match_columns 483
No_of_seqs 277 out of 2621
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 10:42:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011561.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011561hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 18.9 6.4E+02 0.022 24.5 24.2 53 155-207 132-187 (491)
2 2jln_A MHP1; hydantoin, transp 6.0 9.7E+02 0.033 24.3 7.1 18 228-245 431-448 (501)
3 3p5n_A RIBU, riboflavin uptake 5.2 1.2E+03 0.039 20.3 6.3 32 445-476 110-141 (189)
4 3j1r_A Archaeal adhesion filam 4.7 6E+02 0.02 15.2 2.5 16 154-169 8-23 (26)
5 2jp3_A FXYD domain-containing 4.1 6.2E+02 0.021 18.8 2.8 20 18-37 17-36 (67)
6 2jo1_A Phospholemman; FXYD1, N 3.6 7.3E+02 0.025 18.6 2.8 19 19-37 17-35 (72)
7 3dh4_A Sodium/glucose cotransp 3.3 2.9E+03 0.1 20.6 9.9 49 155-206 425-473 (530)
8 4dx5_A Acriflavine resistance 3.3 3.7E+03 0.13 21.8 12.1 99 339-439 316-419 (1057)
9 2zxe_G FXYD10, phospholemman-l 3.2 6.7E+02 0.023 18.9 2.3 18 20-37 21-38 (74)
10 2ls4_A High affinity copper up 4.1 2.9E+02 0.01 16.6 0.0 19 135-153 7-25 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=18.87 E-value=6.4e+02 Score=24.46 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=30.6
Q ss_pred HHHHHHHhHHHHHHHH---HHhhchhhhhcCCCCchhHHHHHHHHHHHHHHHHHhh
Q 011561 155 LPFCTGFAAGCMIWMV---IAEVLPDAFKEASPTPVASAATISVAFMEALSTLFQN 207 (483)
Q Consensus 155 ~~~lla~aaG~lLyv~---~~eLlPea~~~~~~~~~~~~~~~G~~~m~~l~~~~~~ 207 (483)
..++.|++.|....++ ..|..|+..+.........+...|.++...+......
T Consensus 132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (491)
T 4gc0_A 132 YRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR 187 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence 3577788877665544 4577776554332223345566666666666655443
No 2
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=5.99 E-value=9.7e+02 Score=24.29 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=12.4
Q ss_pred ccchhhHHHHHHHhhhhc
Q 011561 228 LGPLLGGIVLLAFAHAFS 245 (483)
Q Consensus 228 ~~~~~~g~~l~~~~~~~~ 245 (483)
..+|..+.++++...+..
T Consensus 431 ~~g~~va~v~Y~~l~~~~ 448 (501)
T 2jln_A 431 VTGLIAALLLHIPAMRWV 448 (501)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 346677778888777754
No 3
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=5.25 E-value=1.2e+03 Score=20.29 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhhhcCCCCC
Q 011561 445 RKGSCGLIFGVGFATLCLTCTKLVCLHTPYCN 476 (483)
Q Consensus 445 ~~~~~~~~~G~~l~~~~l~~~~~~~~~~~~~~ 476 (483)
++..++.++|..++.++..+..|..+.-.|-+
T Consensus 110 ~~~~~~~i~G~~~~~i~~~~~n~~~~~ply~~ 141 (189)
T 3p5n_A 110 KSLITGLIIATIVMTIVLSILNYFVLLPLYGM 141 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888877777655433443
No 4
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=4.70 E-value=6e+02 Score=15.20 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=11.4
Q ss_pred hHHHHHHHhHHHHHHH
Q 011561 154 FLPFCTGFAAGCMIWM 169 (483)
Q Consensus 154 ~~~~lla~aaG~lLyv 169 (483)
.+-++.+.++++++|.
T Consensus 8 ~lLIviav~aaVllyl 23 (26)
T 3j1r_A 8 LLLILIAVAAAVLLYT 23 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456777888888875
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=4.12 E-value=6.2e+02 Score=18.75 Aligned_cols=20 Identities=10% Similarity=0.021 Sum_probs=11.5
Q ss_pred HhhcchhHHHHHHHHHHHHH
Q 011561 18 QEHGASNWVVIGILSGGIFI 37 (483)
Q Consensus 18 ~~~~~~~~~~~gf~~G~~~~ 37 (483)
++.++..++.+.|++|+++.
T Consensus 17 LRigGLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 17 LQLGGLIFGGLLCIAGIALA 36 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred heecchhhHHHHHHHHHHHH
Confidence 33444445667777776554
No 6
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=3.58 E-value=7.3e+02 Score=18.57 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=11.3
Q ss_pred hhcchhHHHHHHHHHHHHH
Q 011561 19 EHGASNWVVIGILSGGIFI 37 (483)
Q Consensus 19 ~~~~~~~~~~gf~~G~~~~ 37 (483)
..++..++.+.|++|+++.
T Consensus 17 RiGGLifA~vLfi~GI~ii 35 (72)
T 2jo1_A 17 QIGGLVIAGILFILGILIV 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHH
Confidence 3344445677777777554
No 7
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=3.34 E-value=2.9e+03 Score=20.61 Aligned_cols=49 Identities=8% Similarity=0.015 Sum_probs=27.8
Q ss_pred HHHHHHHhHHHHHHHHHHhhchhhhhcCCCCchhHHHHHHHHHHHHHHHHHh
Q 011561 155 LPFCTGFAAGCMIWMVIAEVLPDAFKEASPTPVASAATISVAFMEALSTLFQ 206 (483)
Q Consensus 155 ~~~lla~aaG~lLyv~~~eLlPea~~~~~~~~~~~~~~~G~~~m~~l~~~~~ 206 (483)
.+.+.++.+|..+++.+. +.|... ........++++.++++.+...+-+
T Consensus 425 ~gA~~g~i~G~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~i~~v~vSl~t~ 473 (530)
T 3dh4_A 425 KGAIIGVVASIPFALFLK-FMPLSM--PFMDQMLYTLLFTMVVIAFTSLSTS 473 (530)
T ss_dssp HHHHHHHHHHHHHHHHHH-TSSSCC--CHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCc--cHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 467778888888777763 333100 0011235566777777777766443
No 8
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=3.33 E-value=3.7e+03 Score=21.84 Aligned_cols=99 Identities=12% Similarity=-0.007 Sum_probs=42.6
Q ss_pred hhhhhHHhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHhcCCchHHHHHHHHHHhhhhHHHHHHHHH-hhcChhhH
Q 011561 339 ALAEGLALGVAAPKAYGLGQHMVLPVSLHGLPRGAAVASCIYGATASLPASLAAAALIGFMGPTSAIGAIL-AGIDYSGL 417 (483)
Q Consensus 339 ~~~EGlaiG~s~~~~~~~g~~l~~aI~lH~ipeg~a~~~~l~~~~~s~~~~~~~~~~~~l~~plGa~ig~~-~~~~~~~~ 417 (483)
.+|+|+.+-.. .+...-..-...=...+++.++.+...+.-.-...++..++.++.-....+|++.... ++.+-+..
T Consensus 316 ~lp~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lv~~vl~~~~~s~~~~li~~~~ip~~~~~~~~~l~~~g~~ln~~ 393 (1057)
T 4dx5_A 316 FFPSGLKIVYP--YDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTL 393 (1057)
T ss_dssp GCCTTEEEEEE--EESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hCCCCeEEEEE--ecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46777554432 1211111223333455666677766665555443333333333333333344444433 25444443
Q ss_pred H-HHHHHHHhhh---HHhHHHHHhhh
Q 011561 418 D-HVMVFACGGL---LPSFGRIVKRA 439 (483)
Q Consensus 418 ~-~lla~aaG~~---yv~~~ellpe~ 439 (483)
. ..+.++.|.. -|...|-+-+.
T Consensus 394 sl~gl~~~iGi~vd~aIv~~~~~~~~ 419 (1057)
T 4dx5_A 394 TMFGMVLAIGLLVDDAIVVVENVERV 419 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHeeccccceEEeHHHHHHH
Confidence 3 2334444544 33344444433
No 9
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=3.19 E-value=6.7e+02 Score=18.93 Aligned_cols=18 Identities=11% Similarity=-0.082 Sum_probs=9.3
Q ss_pred hcchhHHHHHHHHHHHHH
Q 011561 20 HGASNWVVIGILSGGIFI 37 (483)
Q Consensus 20 ~~~~~~~~~gf~~G~~~~ 37 (483)
.++..++.+.|++|+++.
T Consensus 21 igGLifA~vLfi~GI~ii 38 (74)
T 2zxe_G 21 VVGLIVAAVLCVIGIIIL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eccchhHHHHHHHHHHHH
Confidence 334444556666665443
No 10
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=4.12 E-value=2.9e+02 Score=16.60 Aligned_cols=19 Identities=5% Similarity=-0.113 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhhhchh
Q 011561 135 LPQPIVAVPSFICADAFNK 153 (483)
Q Consensus 135 l~t~lGalig~~~~~~~~~ 153 (483)
++..+|+.+|+++....+.
T Consensus 7 iavvlGa~~Gyf~F~~~~~ 25 (26)
T 2ls4_A 7 IAVAAGAGTGYFLFSWKKX 25 (26)
Done!