Query 011561
Match_columns 483
No_of_seqs 277 out of 2621
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 10:42:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011561.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011561hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kqfb2 f.23.22.1 (B:246-290) 3.8 3.2E+02 0.023 17.1 2.6 17 417-433 18-35 (45)
2 d1v54d_ f.23.1.1 (D:) Mitochon 2.4 7.7E+02 0.056 18.9 4.2 16 429-444 58-73 (144)
3 d2e74f1 f.23.25.1 (F:1-32) Pet 1.7 7.9E+02 0.058 13.5 2.4 14 451-464 16-29 (32)
4 d1kf6c_ f.21.2.2 (C:) Fumarate 1.4 1.7E+03 0.13 16.4 11.0 46 396-441 47-95 (130)
5 d2axtm1 f.23.35.1 (M:1-36) Pho 1.3 8.6E+02 0.063 14.1 1.8 7 11-17 14-20 (36)
6 d2axtk1 f.23.36.1 (K:10-46) Ph 1.2 2.1E+02 0.015 17.0 -1.3 16 368-383 1-16 (37)
7 d1flca2 c.23.10.2 (A:1-150,A:3 0.9 6.8E+02 0.05 21.0 0.8 11 465-475 172-182 (271)
8 d2e74e1 f.23.24.1 (E:1-32) Pet 0.9 1.3E+03 0.094 12.4 3.6 31 138-175 2-32 (32)
9 d2paqa1 a.211.1.1 (A:2-187) 5' 0.9 1E+03 0.074 18.4 1.9 15 97-111 60-74 (186)
10 d2onkc1 f.58.1.1 (C:1-252) Mol 0.9 2.4E+03 0.18 15.8 6.1 102 102-205 150-251 (252)
No 1
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=3.82 E-value=3.2e+02 Score=17.06 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhh-HHhHH
Q 011561 417 LDHVMVFACGGL-LPSFG 433 (483)
Q Consensus 417 ~~~lla~aaG~~-yv~~~ 433 (483)
.++..++++|.| |+..-
T Consensus 18 ~~~~~~~~~~~fHYv~vG 35 (45)
T d1kqfb2 18 AGFIATFAGLIFHYIGIG 35 (45)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhheeC
Confidence 345666777888 98764
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.43 E-value=7.7e+02 Score=18.93 Aligned_cols=16 Identities=6% Similarity=-0.051 Sum_probs=11.5
Q ss_pred HHhHHHHHhhhhcCCc
Q 011561 429 LPSFGRIVKRAASLDT 444 (483)
Q Consensus 429 yv~~~ellpe~~~~~~ 444 (483)
|++|.+-.||..+...
T Consensus 58 risF~~t~ae~~~p~g 73 (144)
T d1v54d_ 58 RLKFKESFAEMNRSTN 73 (144)
T ss_dssp HHHCSSCHHHHTCCCS
T ss_pred HHHhccccccccCCCC
Confidence 7788888888866543
No 3
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=1.66 E-value=7.9e+02 Score=13.54 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHH
Q 011561 451 LIFGVGFATLCLTC 464 (483)
Q Consensus 451 ~~~G~~l~~~~l~~ 464 (483)
+++|+.+.++.+.+
T Consensus 16 ifvgwglgalllki 29 (32)
T d2e74f1 16 IFVGWGLGVLLLKI 29 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHhhh
Confidence 46777777666654
No 4
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=1.35 E-value=1.7e+03 Score=16.39 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=28.5
Q ss_pred HhhhhHHHHHHHHHh--hcChhhHHHHHHHHHhhh-HHhHHHHHhhhhc
Q 011561 396 IGFMGPTSAIGAILA--GIDYSGLDHVMVFACGGL-LPSFGRIVKRAAS 441 (483)
Q Consensus 396 ~~l~~plGa~ig~~~--~~~~~~~~~lla~aaG~~-yv~~~ellpe~~~ 441 (483)
+++.....++-|+.- +.+-...--+.++++-.+ -.+..++.|+.-.
T Consensus 47 ~~L~~g~~aw~~fv~flqnP~vv~lniiaLaa~L~Ha~TwF~l~Pk~m~ 95 (130)
T d1kf6c_ 47 FALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAAN 95 (130)
T ss_dssp HHHHTHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGGCC
T ss_pred HHHhcCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 444444445555432 223333445777877778 8999999998753
No 5
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.28 E-value=8.6e+02 Score=14.05 Aligned_cols=7 Identities=29% Similarity=0.377 Sum_probs=3.3
Q ss_pred HHhhHhh
Q 011561 11 FDLIQEG 17 (483)
Q Consensus 11 ~~LlPea 17 (483)
|-++|.+
T Consensus 14 FilvPt~ 20 (36)
T d2axtm1 14 FVLVPSV 20 (36)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4455443
No 6
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.20 E-value=2.1e+02 Score=17.03 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHhcC
Q 011561 368 GLPRGAAVASCIYGAT 383 (483)
Q Consensus 368 ~ipeg~a~~~~l~~~~ 383 (483)
|+||+.+.+-|+.+--
T Consensus 1 kLPeay~~f~Pivdvl 16 (37)
T d2axtk1 1 KLPEAYAIFDPLVDVL 16 (37)
T ss_dssp CCCGGGGGCHHHHHHG
T ss_pred CcchhhhhhchHHHHh
Confidence 4566666666665543
No 7
>d1flca2 c.23.10.2 (A:1-150,A:307-427) Esterase domain of haemagglutinin-esterase-fusion glycoprotein HEF1 {Influenza C virus [TaxId: 11552]}
Probab=0.93 E-value=6.8e+02 Score=20.98 Aligned_cols=11 Identities=45% Similarity=0.966 Sum_probs=0.0
Q ss_pred HhHhhhcCCCC
Q 011561 465 TKLVCLHTPYC 475 (483)
Q Consensus 465 ~~~~~~~~~~~ 475 (483)
+..+|+..|||
T Consensus 172 ~a~AC~q~PYC 182 (271)
T d1flca2 172 VDQACLSTPGC 182 (271)
T ss_dssp HHHHHHTSTTE
T ss_pred HHHHhccCCeE
No 8
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=0.90 E-value=1.3e+03 Score=12.44 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhchhhHHHHHHHhHHHHHHHHHHhhc
Q 011561 138 PIVAVPSFICADAFNKFLPFCTGFAAGCMIWMVIAEVL 175 (483)
Q Consensus 138 ~lGalig~~~~~~~~~~~~~lla~aaG~lLyv~~~eLl 175 (483)
.+|++....+ .+...+++.|+...+-...++
T Consensus 2 ilgavfyivf-------ialffgiavgiifaiksikli 32 (32)
T d2e74e1 2 ILGAVFYIVF-------IALFFGIAVGIIFAIKSIKLI 32 (32)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHTTTTC
T ss_pred eeeeeHHHHH-------HHHHHHHHhhheeeEEEEeeC
No 9
>d2paqa1 a.211.1.1 (A:2-187) 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562]}
Probab=0.89 E-value=1e+03 Score=18.43 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHHHHhhchhHHH
Q 011561 97 VTLAIAVHNIPEGLA 111 (483)
Q Consensus 97 l~~AI~lH~ipeg~a 111 (483)
+....++|++||.+.
T Consensus 60 ~~~~aL~HDl~E~~~ 74 (186)
T d2paqa1 60 IALLAMYHDASEVLT 74 (186)
T ss_dssp HHHHHHHTTTTHHHH
T ss_pred HHHHHHHcchHHHHc
No 10
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=0.89 E-value=2.4e+03 Score=15.84 Aligned_cols=102 Identities=17% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHhhchhHHHHHHHHhhcCCChHHHHHHHHHHHhHHHHHHHHHHHhhhhchhhHHHHHHHhHHHHHHHHHHhhchhhhhc
Q 011561 102 AVHNIPEGLAVSMMLASKGVSPQNAMLWSIITSLPQPIVAVPSFICADAFNKFLPFCTGFAAGCMIWMVIAEVLPDAFKE 181 (483)
Q Consensus 102 ~lH~ipeg~a~~~~L~~~g~s~~~a~l~~~l~al~t~lGalig~~~~~~~~~~~~~lla~aaG~lLyv~~~eLlPea~~~ 181 (483)
.+.++|++.-.++... |.++++.+.--.+..+...+-......+...-..+....+--..+..+.....+..-+....
T Consensus 150 ~~~~i~~~~~eaA~~l--Gas~~~~~~~i~lP~~~p~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 227 (252)
T d2onkc1 150 GFASVDVRLEHVARTL--GSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAYYPMIAPTLIYERYLSEGLS 227 (252)
T ss_dssp HHHHSCHHHHHHHHHT--TCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHTTCCSSCCHHHHHHHHHHHHCGG
T ss_pred HHHhhhHHHHHHHHhc--CCCccccceEEEhHHhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHhcCHH
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHH
Q 011561 182 ASPTPVASAATISVAFMEALSTLF 205 (483)
Q Consensus 182 ~~~~~~~~~~~~G~~~m~~l~~~~ 205 (483)
.......+.+++-+.+..+.+++.
T Consensus 228 ~~~a~~~il~~~~~~~~~~~~~~~ 251 (252)
T d2onkc1 228 AAMPVAAILILLSLAVFVALRIIV 251 (252)
T ss_dssp GTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Done!