BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011562
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 133/341 (39%), Gaps = 47/341 (13%)
Query: 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARL 141
+DV +LG + VD + + ++ S+ + Y SP N+A+ +RL
Sbjct: 22 LDVVSLGEILVDXI-STEEVNSLSQS--REYTRHFGGSP-----------ANIAVNLSRL 67
Query: 142 GLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQ 201
G I +G + +G +LLDVL+ E I G+ +D E V V S
Sbjct: 68 GKKVALISRLGADAFGNYLLDVLKGEQIITDGIQQDK----------ERRTTIVYVSKST 117
Query: 202 RHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPA--LIISALEYA 259
R + + + + + E+ IK SKV + + PA I A YA
Sbjct: 118 RT--PDWLPYREADXYLQEDDIIFEL---IKRSKVFHLSTFILSR-KPARDTAIKAFNYA 171
Query: 260 AQVGTSIFFDPG------PRGKSLSSGTPEEQRALSYFXXXXXXXXXXXXEAESLTGLRN 313
+ G + FDP P G +G EE + + F +A L G +
Sbjct: 172 REQGKIVCFDPCYRKVLWPEGDD-GAGVVEEIISRADFVKPSLD------DARHLFGPDS 224
Query: 314 PITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVA 373
P + L G+ K V++ +G G I I PAF + D G GD+F +
Sbjct: 225 PENYVKRYLELGV--KAVILTLGEEGVIASDGEEIIRIPAFSEDAVDVTGAGDAFWSGFI 282
Query: 374 FGFIHNMPTVNTLTIANAVGAATAMGCGAGRNVATLERVIE 414
G + ++ + N V A G GA V + E +I+
Sbjct: 283 CGLLDGYTVKRSIKLGNGVAAFKIRGVGALSPVPSKEDIIK 323
>pdb|3PL2|A Chain A, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|B Chain B, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|C Chain C, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|D Chain D, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
Length = 319
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 109/262 (41%), Gaps = 22/262 (8%)
Query: 140 RLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDP 199
R G + + VGN+ +G +LL L+ G+ ++ D +++T + + + P
Sbjct: 53 RHGHNSALLSRVGNDPFGEYLLAELERLGVDNQYVATDQ--------TFKTPVTFCEIFP 104
Query: 200 SQRHGFCSRADFSKEPAFSWMNKLSAEVK-TAIKHSKVLFCNGYGF-DELSPALIISALE 257
F +EP +N SA+V ++ + +L+ GF +E S L
Sbjct: 105 PDDFPLY----FYREPKAPDLNIESADVSLDDVREADILWFTLTGFSEEPSRGTHREILT 160
Query: 258 YAAQVGTSIF-FDPGPR-GKSLSSGTPEEQRALSYFXXXXXXXXXXXXEAESLTGLRNPI 315
A +IF D P +S T + + AL + E E G P
Sbjct: 161 TRANRRHTIFDLDYRPXFWESPEEATKQAEWALQH----STVAVGNKEECEIAVGETEPE 216
Query: 316 TAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFG 375
AG+ LL +G+ + +VK GP+G TK P F V+V + +G GD+F A+ G
Sbjct: 217 RAGRALLERGV--ELAIVKQGPKGVXAXTKDETVEVPPFFVDVINGLGAGDAFGGALCHG 274
Query: 376 FIHNMPTVNTLTIANAVGAATA 397
+ P L AN GA A
Sbjct: 275 LLSEWPLEKVLRFANTAGALVA 296
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 124/306 (40%), Gaps = 39/306 (12%)
Query: 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAA 139
+ D+ +G C+D LN + P + + + SP N+ I ++
Sbjct: 10 REFDLIAIGRACID--LNAVEYNRPXEET-XTFSKYVGGSP-----------ANIVIGSS 55
Query: 140 RLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDP 199
+LGL IG + ++ +GRF+ + G+ + D +G T A E + P
Sbjct: 56 KLGLKAGFIGKIADDQHGRFIESYXRGVGVDTSNLVVDQEGHKTGLAFTE------IKSP 109
Query: 200 SQRHGFCSRADFSKEPAFSWMNKLSAEVKTA-IKHSKVLFCNGYGFDELSPA--LIISAL 256
+ CS + ++ A +++ EV A I+ SK+L +G + SP+ ++ A+
Sbjct: 110 EE----CSILXYRQDVADLYLS--PEEVNEAYIRRSKLLLVSGTALSK-SPSREAVLKAI 162
Query: 257 EYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFXXXXXXXXXXXXEAESLTGLRNPIT 316
A + + F+ R S TPEE Y+ E L N
Sbjct: 163 RLAKRNDVKVVFELDYRPYSWE--TPEETAV--YYSLVAEQSDIVIGTREEFDVLENRTE 218
Query: 317 AG--QELLRKGLRT--KWVVVKMGPRGSILVTKSSISC-APAFKVNVTDTVGCGDSFVAA 371
G E +R + + +V+K G GS TK+ + A+K V T G GDS+ +A
Sbjct: 219 KGDNDETIRYLFKHSPELIVIKHGVEGSFAYTKAGEAYRGYAYKTKVLKTFGAGDSYASA 278
Query: 372 VAFGFI 377
+ I
Sbjct: 279 FLYALI 284
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 115/298 (38%), Gaps = 39/298 (13%)
Query: 121 PDKQ--YWE--AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSE 176
P+KQ Y + G + NV + ARLG +C IG +G++ GRFL V QD G+ + +
Sbjct: 39 PEKQNSYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRL 98
Query: 177 DTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTA------ 230
D D L VL+ G E +F+++ A+ +
Sbjct: 99 DAD-----------LTSAVLIVNLTADG---------ERSFTYLVHPGADTYVSPQDLPP 138
Query: 231 IKHSKVLFCNGYGF-DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALS 289
+ + + + G D + + + G + FD R K + T E ++
Sbjct: 139 FRQYEWFYFSSIGLTDRPAREACLEGARRXREAGGYVLFDVNLRSKXWGN-TDEIPELIA 197
Query: 290 YFXXXXXXXXXXXXEAESLTGLRNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSIS 349
E L+G + A L G T ++ +G G++L+T
Sbjct: 198 RSAALASICKVSADELCQLSGASHWQDARYYLRDLGCDT--TIISLGADGALLITAEGEF 255
Query: 350 CAPAFKVNVTDTVGCGDSFVAAVAFGFIH-----NMPTVNTLTIANAVGAATAMGCGA 402
PA +V+V DT G GD+FV + F + ++ ANA GA GA
Sbjct: 256 HFPAPRVDVVDTTGAGDAFVGGLLFTLSRANCWDHALLAEAISNANACGAXAVTAKGA 313
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 115/298 (38%), Gaps = 39/298 (13%)
Query: 121 PDKQ--YWE--AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSE 176
P+KQ Y + G + NV + ARLG +C IG +G++ GRFL V QD G+ + +
Sbjct: 39 PEKQNSYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRL 98
Query: 177 DTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTA------ 230
D D L VL+ G E +F+++ A+ +
Sbjct: 99 DAD-----------LTSAVLIVNLTADG---------ERSFTYLVHPGADTYVSPQDLPP 138
Query: 231 IKHSKVLFCNGYGF-DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALS 289
+ + + + G D + + + G + FD R K + T E ++
Sbjct: 139 FRQYEWFYFSSIGLTDRPAREACLEGARRMREAGGYVLFDVNLRSK-MWGNTDEIPELIA 197
Query: 290 YFXXXXXXXXXXXXEAESLTGLRNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSIS 349
E L+G + A L G T ++ +G G++L+T
Sbjct: 198 RSAALASICKVSADELCQLSGASHWQDARYYLRDLGCDT--TIISLGADGALLITAEGEF 255
Query: 350 CAPAFKVNVTDTVGCGDSFVAAVAFGFIH-----NMPTVNTLTIANAVGAATAMGCGA 402
PA +V+V DT G GD+FV + F + ++ ANA GA GA
Sbjct: 256 HFPAPRVDVVDTTGAGDAFVGGLLFTLSRANCWDHALLAEAISNANACGAMAVTAKGA 313
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 25/180 (13%)
Query: 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSY 290
I +KV+ C E++PA + AL A + G F+P P +++ P+
Sbjct: 152 ISRAKVMVCQ----LEITPATSLEALTMARRSGVKTLFNPAP---AIADLDPQ------- 197
Query: 291 FXXXXXXXXXXXXEAESLTGLR--NPITAGQE---LLRKGLRTKWVVVKMGPRGSILV-- 343
F EAE LTGL + AG+ LL++G + V++ +G G +++
Sbjct: 198 FYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQV--VIITLGAEGCVVLSQ 255
Query: 344 TKSSISCAPAFKVNVTDTVGCGDSFVAAVAF--GFIHNMPTVNTLTIANAVGAATAMGCG 401
T+ P KV DT G GDSFV A+AF + N+ + L +N + A + G
Sbjct: 256 TEPEPKHIPTEKVKAVDTTGAGDSFVGALAFYLAYYPNLSLEDMLNRSNFIAAVSVQAAG 315
>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
pdb|1VM7|B Chain B, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
Length = 311
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/342 (22%), Positives = 128/342 (37%), Gaps = 57/342 (16%)
Query: 84 VATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGL 143
++ +G+ +DIVL V P + M+ + G N A+ A++G
Sbjct: 17 ISVVGSSNIDIVLKVDHFTKPGETQKAIEMN----------VFPGGKGANQAVTVAKIGE 66
Query: 144 D-CVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQR 202
C + +GN+ Y L++ E +G+ G S T ++ VD + +
Sbjct: 67 KGCRFVTCIGNDDYSDLLIE--NYEKLGITGYIR---------VSLPTGRAFIEVDKTGQ 115
Query: 203 HGFC----SRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEY 258
+ + A+ KE W N LS + +L N F+ + LE
Sbjct: 116 NRIIIFPGANAELKKE-LIDW-NTLS-------ESDILLLQNEIPFE--------TTLEC 158
Query: 259 AAQVGTSIFFDPGPRGKSLSSGTPEEQ-RALSYFXXXXXXXXXXXXE--AESLTGLRNPI 315
A + + FDP P + G EE + L Y + E LT +
Sbjct: 159 AKRFNGIVIFDPAP-----AQGINEEIFQYLDYLTPNEKEIEALSKDFFGEFLTVEK--- 210
Query: 316 TAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFG 375
A ++ L G++ V+VK+G +G +LV K+ P FKV DT GD F A A
Sbjct: 211 -AAEKFLELGVKN--VIVKLGDKGVLLVNKNEKKHFPTFKVKAVDTTAAGDVFNGAFAVA 267
Query: 376 FIHNMPTVNTLTIANAVGAATAMGCGAGRNVATLERVIELMR 417
+ A A + GA ++ E V ++
Sbjct: 268 LSEGKNPEEAVIFGTAAAAISVTRLGAQSSIPAREEVEAFLK 309
>pdb|4DU5|A Chain A, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|B Chain B, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|C Chain C, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|D Chain D, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
Length = 336
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 98/259 (37%), Gaps = 39/259 (15%)
Query: 128 AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSAS 187
AG NVAI ARLGL +G + GR+LL EGI D S
Sbjct: 58 AGAETNVAIGLARLGLKVGWASRLGTDSXGRYLLAAXAAEGI------------DCSH-- 103
Query: 188 YETLLCWVLVDPSQRHGFCSRADFS--KEPAFSWMNKLSAEVKTA---IKHSKVLFCNGY 242
V+ D +Q+ GF + + +P + K SA I + +L
Sbjct: 104 -------VVCDATQKTGFQFKGKVTDGSDPPVEYHRKGSAASHXGVADIDEAWLLSARHL 156
Query: 243 GFDELSPALIISALEYAAQ-------VGTSIFFDPGPRGKSLSSGTPEEQR-ALSYFXXX 294
+ PA+ + L A + G S+ FDP R + TPE R A++
Sbjct: 157 HATGVFPAISATTLPAARKTXDLXRAAGRSVSFDPNLRPTLWA--TPELXRDAINDLATR 214
Query: 295 XXXXXXXXXEAESLTGLRNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAF 354
E LTG P G + L K VVVK+G G+ ++ F
Sbjct: 215 ADWVLPGXEEGRFLTGETTP--EGVARFYRQLGAKLVVVKLGAEGAYFDGEAGSGRVAGF 272
Query: 355 KV-NVTDTVGCGDSFVAAV 372
V V DTVG GD F V
Sbjct: 273 PVAEVVDTVGAGDGFAVGV 291
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 113/302 (37%), Gaps = 48/302 (15%)
Query: 87 LGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCV 146
LG++ D +LN+ P P + Q G N A+AA R G +
Sbjct: 10 LGSINADHILNLQSFPTPGETVTGNHY----------QVAFGGKGANQAVAAGRSGANIA 59
Query: 147 TIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFC 206
I G++ G + L + I + +S S L +V + G
Sbjct: 60 FIACTGDDSIGESVRQQLATDNIDITPVSV------IKGESTGVALIFVNGEGENVIGIH 113
Query: 207 SRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPAL--IISALEYAAQVGT 264
+ A+ + PA + A+ + S +L +L L +++A + A Q T
Sbjct: 114 AGANAALSPAL-----VEAQRERIANASALLM-------QLESPLESVMAAAKIAHQNKT 161
Query: 265 SIFFDPGPRGKSLSSGTPEEQRALSYFXXXXXXXXXXXXEAESLTGLR-----NPITAGQ 319
+ +P P + P+E AL EAE LTG+R + A Q
Sbjct: 162 IVALNPAP-----ARELPDELLALVDIITPNET------EAEKLTGIRVENDEDAAKAAQ 210
Query: 320 ELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHN 379
L KG+RT V++ +G RG P F+V DT+ GD+F A+ +
Sbjct: 211 VLHEKGIRT--VLITLGSRGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITALLEE 268
Query: 380 MP 381
P
Sbjct: 269 KP 270
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 128/350 (36%), Gaps = 57/350 (16%)
Query: 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARL 141
++V T G V +V PQ P R R + + G NVA+A ARL
Sbjct: 2 LEVVTAGEPLVALV---PQEPGHLRGKRLL------------EVYVGGAEVNVAVALARL 46
Query: 142 GLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQ 201
G+ +G VG + G + + L+ EG+ + + + L + Q
Sbjct: 47 GVKVGFVGRVGEDELGAMVEERLRAEGVDLTHFR--------RAPGFTGLYLREYLPLGQ 98
Query: 202 RHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELS---PALI------ 252
F R K SA A + G F LS PAL
Sbjct: 99 GRVFYYR-------------KGSAGSALAPGAFDPDYLEGVRFLHLSGITPALSPEARAF 145
Query: 253 -ISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRA-LSYFXXXXXXXXXXXXEAESLTG 310
+ A+E A + G + D R ++L S PEE R L EAE L G
Sbjct: 146 SLWAMEEAKRRGVRVSLDVNYR-QTLWS--PEEARGFLERALPGVDLLFLSEEEAELLFG 202
Query: 311 LRNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVA 370
+E LR L VV+K G +G+ AF V D VG GD+F A
Sbjct: 203 RV------EEALRA-LSAPEVVLKRGAKGAWAFVDGRRVEGSAFAVEAVDPVGAGDAFAA 255
Query: 371 AVAFGFIHNMPTVNTLTIANAVGAATAMGCGAGRNVATLERVIELMRASN 420
G + +P L +AN +GA+ A G E + L++A+
Sbjct: 256 GYLAGAVWGLPVEERLRLANLLGASVAASRGDHEGAPYREDLEVLLKATQ 305
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 119/297 (40%), Gaps = 51/297 (17%)
Query: 84 VATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGL 143
V LG+ VD L V + P + L K + G N AIA AR+
Sbjct: 5 VVILGSTNVDQFLTVERYAQPG--------ETLHVEEAQKAFG-GGKGANQAIATARMQA 55
Query: 144 DCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRH 203
D I +G + F+L+ + I DT + +A +T ++ V+ ++
Sbjct: 56 DTTFITKIGTDGVADFILEDFKVAHI-------DTSYI-IKTAEAKTGQAFITVNAEGQN 107
Query: 204 GFCSR--ADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQ 261
A+ + P +N K AI ++ + E+ IISA E A
Sbjct: 108 TIYVYGGANMTMTPE-DVIN-----AKDAIINADFVVAQL----EVPIPAIISAFEIAKA 157
Query: 262 VGTSIFFDPGPRGKSLSSGTPEEQRALSYFXXXXXXXXXXXXEAESLTGLRNPITAGQEL 321
G + +P P K+L P E +L EAE L+G++ +T Q +
Sbjct: 158 HGVTTVLNPAP-AKAL----PNELLSL------IDIIVPNETEAELLSGIK--VTNEQSM 204
Query: 322 -------LRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAA 371
L G++T V++ +G +G+ TK+ A+KVN DT GD+F+ A
Sbjct: 205 KDNANYFLSIGIKT--VLITLGKQGTYFATKNQSQHIEAYKVNAIDTTAAGDTFIGA 259
>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
pdb|3KZH|B Chain B, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
Length = 328
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 304 EAESLTGLRNPITAGQELLRK-----GLRTKWVVVKMGPRGSILVTKSSISCAP--AFKV 356
EAE L G PIT +L++ GL K V + + G + +SC A +V
Sbjct: 192 EAEILAGF--PITDTDDLIKASNYFLGLGIKKVFISLDADG--IFYNDGVSCGKIKATEV 247
Query: 357 NVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIA 389
+V + G GDSFVA + +G+ + P + + A
Sbjct: 248 DVKNVTGAGDSFVAGLGYGYXNKXPIEDIVKFA 280
>pdb|3Q1Y|A Chain A, Allosteric Regulation By Lysine Residue: A Novel
Anion-Hole Formation In The Ribokinase Family
Length = 320
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%)
Query: 330 WVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIA 389
++VV +G +GSI + KV + G GD FV A G NMP TL +A
Sbjct: 217 YLVVSLGAKGSICAHNGKLYQVIPPKVQERNDTGAGDVFVGAFIAGLAMNMPITETLKVA 276
Query: 390 NAVGAATAM 398
A+ M
Sbjct: 277 TGCSASAVM 285
>pdb|2C49|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C49|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C4E|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
Length = 302
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 76/357 (21%), Positives = 124/357 (34%), Gaps = 69/357 (19%)
Query: 78 GVKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIA 137
G K + +G+ +D + NV + P P+ S P + + G N A+
Sbjct: 2 GGKMEKITCVGHTALDYIFNVEKFPEPNT----------SIQIPSARKYYGGAAANTAVG 51
Query: 138 AARLGLDCVTIGHVG----NEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLC 193
+LG++ + VG N Y R+L ++ D I + SE+ ET
Sbjct: 52 IKKLGVNSELLSCVGYDFKNSGYERYLKNL--DINISKLYYSEEE----------ETPKA 99
Query: 194 WVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPALII 253
W+ D D ++ F W A KH K L N F+ +
Sbjct: 100 WIFTD----------KDNNQITFFLW---------GAAKHYKEL--NPPNFNTEIVHIAT 138
Query: 254 SALEYAAQVGTSIF------FDPGPRGKSLSSGTPEEQRALSYFXXXXXXXXXXXXEAES 307
E+ + + FDPG S + L E E
Sbjct: 139 GDPEFNLKCAKKAYGNNLVSFDPGQDLPQYS------KEMLLEIIEHTNFLFMNKHEFER 192
Query: 308 LTGLRNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKV-NVTDTVGCGD 366
+ L N E+ R ++V G +GS++ TK P K V D G GD
Sbjct: 193 ASNLLN-----FEIDDYLERVDALIVTKGSKGSVIYTKDKKIEIPCIKAGKVIDPTGAGD 247
Query: 367 SFVAAVAFGFI--HNMPTVNTLTIANAVGAATAMGCGAGRNVATLERVIELMRASNL 421
S+ A ++ +++ + A A A GC N+ T ++V+E + +
Sbjct: 248 SYRAGFLSAYVKGYDLEKCGLIGAATASFVVEAKGCQT--NLPTWDKVVERLEKHRI 302
>pdb|3LJS|A Chain A, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LJS|B Chain B, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LKI|A Chain A, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
pdb|3LKI|B Chain B, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
Length = 338
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 112/299 (37%), Gaps = 36/299 (12%)
Query: 138 AARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLV 197
ARLG +G +G++ +G FL D + G+ TDG+ +S + +T L +V +
Sbjct: 46 VARLGGAVQFVGXLGSDXFGDFLFDSFAEAGVV-------TDGIVRTSTA-KTALAFVAL 97
Query: 198 DPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLF--CNGYGFDELSPALIISA 255
D F F + PA + ++ + A ++F C+ D +
Sbjct: 98 DAHGERSFS----FYRPPAADLLFRVE-HFQDASFSDALIFHACSNSXTDADIAEVTFEG 152
Query: 256 LEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFXXXXXXXXXXXXEAESLTGLRNPI 315
A G + FD R P + S +E L L N +
Sbjct: 153 XRRAQAAGAIVSFDLNFRPXLW----PNGENPASRLWKGLSLADVVKLSSEELDYLANTL 208
Query: 316 TAGQELLRKGL---RTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFV--- 369
A + + L R + ++V T+++ P F+V V D+ GD+FV
Sbjct: 209 AADANAVIQQLWQGRAQLLLVTDAAGPVHWYTRTAGGEVPTFRVQVQDSNAAGDAFVGGX 268
Query: 370 ----------AAVAFGFIHNMPT-VNTLTIANAVGAATAMGCGAGRNVATLERVIELMR 417
AA F H+ + V+TL A AVGA GA L V+ L++
Sbjct: 269 LYTFAQQFDDAAALIDFCHDPESIVSTLRFAAAVGALAVTRQGAFTAXPXLSEVLSLIQ 327
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 333 VKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGF 376
+ +GP+G L+ ++ P++ VN DT G GD+F AA+ G
Sbjct: 214 ITLGPKGCRLIKNETVVDVPSYNVNPLDTTGAGDAFXAALLVGI 257
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 129 GGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSED 177
G NVA+ +RLG+ I VGN+ +G +L++ L E + G+ +D
Sbjct: 34 GAPANVAVGVSRLGVKSSLISKVGNDPFGEYLIEELSKENVDTRGIVKD 82
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 333 VKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGF 376
+ +GP+G L+ ++ P++ VN DT G GD+F AA+ G
Sbjct: 214 ITLGPKGFRLIKNETVVDVPSYNVNPLDTTGAGDAFXAALLVGI 257
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 129 GGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSED 177
G NVA+ +RLG+ I VGN+ +G +L++ L E + G+ +D
Sbjct: 34 GAPANVAVGVSRLGVKSSLISKVGNDPFGEYLIEELSKENVDTRGIVKD 82
>pdb|3UQE|A Chain A, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
pdb|3UQE|B Chain B, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
Length = 309
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 317 AGQELLRKGLRTKWVVVKMGPRGSILV-TKSSISCAPAFKVNVTDTVGCGDSFVAAVAFG 375
A QE++ G + K VVV +GP+G++ V +++ I P V TVG GDS V A+
Sbjct: 208 AAQEIVNSG-KAKRVVVSLGPQGALGVDSENCIQVVPP-PVKSQSTVGAGDSMVGAMTLK 265
Query: 376 FIHNMPTVNTLTIANAVGAATAMGCG 401
N + A G+A + G
Sbjct: 266 LAENASLEEMVRFGVAAGSAATLNQG 291
>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2VAR|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
Length = 313
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 121/293 (41%), Gaps = 30/293 (10%)
Query: 125 YWE---AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGV 181
Y+E AG N IA R L C I VGN+ +G+ +++ + +GI DT +
Sbjct: 27 YFEKHVAGSELNFCIAVVRNHLSCSLIARVGNDEFGKNIIEYSRAQGI-------DTSHI 79
Query: 182 DTSSASYETLLCWVLVDPSQR-HGFCSRADFSKEPAFSWMNKLSAEV--KTAIKHSKVLF 238
+ S+ T + ++ QR + +++ S ++LS E + +++S+++
Sbjct: 80 KVDNESF-TGIYFI-----QRGYPIPMKSELVYYRKGSAGSRLSPEDINENYVRNSRLVH 133
Query: 239 CNG--YGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFXXXXX 296
G + + +I A E A S D R K SS ++ LS
Sbjct: 134 STGITLAISDNAKEAVIKAFELA----KSRSLDTNIRPKLWSSLEKAKETILSILKKYDI 189
Query: 297 XXXXXX-XEAESLTGLRNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFK 355
+ + L + +P A ++ K L K ++ K+G +G+I + + A+K
Sbjct: 190 EVLITDPDDTKILLDVTDPDEAYRKY--KELGVKVLLYKLGSKGAIAYKDNVKAFKDAYK 247
Query: 356 VNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAMGCGAGRNVAT 408
V V D G GD+ ++ ++A+ + A+T + G N T
Sbjct: 248 VPVEDPTGAGDAMAGTFVSLYLQGKDI--EYSLAHGIAASTLVITVRGDNELT 298
>pdb|4E84|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda
pdb|4E84|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda
Length = 352
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 104/290 (35%), Gaps = 43/290 (14%)
Query: 113 MDQLSASPP------DKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQD 166
+D++S P +Q GG NVA A LG + VG + G ++++L
Sbjct: 72 VDRISPEAPVPVVHVQRQEERLGGAANVARNAVTLGGQAGLLCVVGCDEPGERIVELLGS 131
Query: 167 EGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAE 226
G+ T ++ A T+ VL Q R DF P + A
Sbjct: 132 SGV--------TPHLERDPALPTTIKLRVLARQQQ----LLRVDFEAXPTHEVLLAGLAR 179
Query: 227 VKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGP------RGKSLSSG 280
+ V+ + Y L+ + + +E A G ++ DP RG SL +
Sbjct: 180 FDVLLPQHDVVLXSDYAKGGLTH--VTTXIEKARAAGKAVLVDPKGDDWARYRGASLITP 237
Query: 281 TPEEQRALSYFXXXXXXXXXXXXEAESLTGLRNPITAGQELLRKGLRTKWVVVKMGPRGS 340
E R + + +S LR + LR L +++ G
Sbjct: 238 NRAELREV-------------VGQWKSEDDLRARVAN----LRAELDIDALLLTRSEEGX 280
Query: 341 ILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIAN 390
L + APA V D G GD+ +A VA +P V+ + +AN
Sbjct: 281 TLFSAGGELHAPALAREVFDVSGAGDTVIATVATXLGAGVPLVDAVVLAN 330
>pdb|3CQD|A Chain A, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3CQD|B Chain B, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3N1C|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3UMO|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMO|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMP|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UMP|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UQD|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
Length = 309
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 317 AGQELLRKGLRTKWVVVKMGPRGSILV-TKSSISCAPAFKVNVTDTVGCGDSFVAAVAFG 375
A QE++ G + K VVV +GP+G++ V +++ I P V TVG GDS V A+
Sbjct: 208 AAQEIVNSG-KAKRVVVSLGPQGALGVDSENCIQVVPP-PVKSQSTVGAGDSMVGAMTLK 265
Query: 376 FIHNMPTVNTLTIANAVGAATAMGCG 401
N + A G+A + G
Sbjct: 266 LAENASLEEMVRFGVAAGSAATLNQG 291
>pdb|3KD6|A Chain A, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
pdb|3KD6|B Chain B, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
Length = 313
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 304 EAESLTGLRNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKV-NVTDTV 362
EA L+G N + + + G +T +++K G G++L T + I APAF + ++ D
Sbjct: 178 EARLLSGDPNLVKTARIIREXGPKT--LIIKKGEHGALLFTDNGIFAAPAFPLESIYDPT 235
Query: 363 GCGDSFVAAVAFGFIHNMPTVNTLTIANA-----VGAATAMGC 400
G GD+F A GFI ++ + A G+A A C
Sbjct: 236 GAGDTF----AGGFIGHLARCGNTSEAEXRKAVLYGSAXASFC 274
>pdb|3BF5|A Chain A, Crystal Structure Of Putative Ribokinase (10640157) From
Thermoplasma Acidophilum At 1.91 A Resolution
pdb|3BF5|B Chain B, Crystal Structure Of Putative Ribokinase (10640157) From
Thermoplasma Acidophilum At 1.91 A Resolution
Length = 306
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 72/339 (21%), Positives = 121/339 (35%), Gaps = 67/339 (19%)
Query: 84 VATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGL 143
+A G+L +D++++V +P R+ ++ P ++ GN + R+
Sbjct: 23 LAYFGHLNIDVLISVDSIP------REGSVNVKDLRP---RFGGTAGNFAIVAQKFRIPF 73
Query: 144 DCVTIGHVGNEIYGRFLLDVLQDEGI--GMVGMSEDTDGVDTSSASYETLLCWVLVDPSQ 201
D + VG + + +L + + GI G V ED G +C++ D +
Sbjct: 74 DLYSA--VGXKTHREYLAXI-ESXGINTGHVEKFEDESGP----------ICYIATDGKK 120
Query: 202 RHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQ 261
+ F + + +W +L+ E + V F G + L+ A
Sbjct: 121 QVSFXHQGAXA-----AWAPQLADE------YEYVHFSTGPNY-----------LDXAKS 158
Query: 262 VGTSIFFDPGPRGKSLSSGTPEEQRALSYFXXXXXXXXXXXXEAESLTGLRNPITAGQEL 321
+ + I FDP S ++ +SY E TGL +P
Sbjct: 159 IRSKIIFDPSQEIHKYSKDELKKFHEISYXSIFNDHEYRVFREX---TGLSSPKVT---- 211
Query: 322 LRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMP 381
+V G RGS L PA + DTVG GDSF A + ++N
Sbjct: 212 ---------TIVTNGERGSSLFXDGKKYDFPAIPSS-GDTVGAGDSFRAGLYLA-LYNRR 260
Query: 382 TVNTLTIANAVGAATAMGCGAGR---NVATLERVIELMR 417
++ I + A + G N LER E R
Sbjct: 261 SIEKGXIYGTIIAHHVIDDGIENFSLNXEDLERETENYR 299
>pdb|4E8W|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8W|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Y|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Y|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Z|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Z|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
Length = 352
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 104/290 (35%), Gaps = 43/290 (14%)
Query: 113 MDQLSASPP------DKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQD 166
+D++S P +Q GG NVA A LG + VG + G ++++L
Sbjct: 72 VDRISPEAPVPVVHVQRQEERLGGAANVARNAVTLGGQAGLLCVVGCDEPGERIVELLGS 131
Query: 167 EGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAE 226
G+ T ++ A T+ VL Q R DF P + A
Sbjct: 132 SGV--------TPHLERDPALPTTIKLRVLARQQQ----LLRVDFEAMPTHEVLLAGLAR 179
Query: 227 VKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGP------RGKSLSSG 280
+ V+ + Y L+ + + +E A G ++ DP RG SL +
Sbjct: 180 FDVLLPQHDVVLMSDYAKGGLTH--VTTMIEKARAAGKAVLVDPKGDDWARYRGASLITP 237
Query: 281 TPEEQRALSYFXXXXXXXXXXXXEAESLTGLRNPITAGQELLRKGLRTKWVVVKMGPRGS 340
E R + + +S LR + LR L +++ G
Sbjct: 238 NRAELREV-------------VGQWKSEDDLRARVAN----LRAELDIDALLLTRSEEGM 280
Query: 341 ILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIAN 390
L + APA V D G GD+ +A VA +P V+ + +AN
Sbjct: 281 TLFSAGGELHAPALAREVFDVSGAGDTVIATVATMLGAGVPLVDAVVLAN 330
>pdb|3HIC|A Chain A, The Crystal Structure Of Phosphofructokinase(Lin2199)from
Listeria Innocua
pdb|3IE7|A Chain A, The Crystal Structure Of Phosphofructokinase (Lin2199)
From Listeria Innocua In Complex With Atp At 1.6a
pdb|3JUL|A Chain A, Crystal Structure Of Listeria Innocua
D-Tagatose-6-Phosphate Kinase Bound With Substrate
Length = 320
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%)
Query: 330 WVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIA 389
++VV +G +GSI + KV + G GD FV A G N P TL +A
Sbjct: 217 YLVVSLGAKGSICAHNGKLYQVIPPKVQERNDTGAGDVFVGAFIAGLAXNXPITETLKVA 276
Query: 390 NAVGAA 395
A+
Sbjct: 277 TGCSAS 282
>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3IQ0|B Chain B, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3K9E|A Chain A, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
pdb|3K9E|B Chain B, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
Length = 330
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 101/264 (38%), Gaps = 33/264 (12%)
Query: 140 RLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDP 199
RLG+ C I VGN+ +G + L +G+ + G+S ++ + +++ T
Sbjct: 49 RLGVPCGIISCVGNDGFGDINIHRLAADGVDIRGIS--VLPLEATGSAFVTY-------- 98
Query: 200 SQRHGFCSRADFSKEPAFSWMNKLSAE-----VKTAIKHSKVLFCNGYGFDELSPALIIS 254
H R DF + KLSA+ + H + + + F + +
Sbjct: 99 ---HNSGDR-DFIFNIKNAACGKLSAQHVDENILKDCTHFHIXGSSLFSFHXVDA--VKK 152
Query: 255 ALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFXXXXXXXXXXXXEAESLTGLRNP 314
A+ G I FDP R + L PE + AL + E L+ P
Sbjct: 153 AVTIVKANGGVISFDPNIRKEXLD--IPEXRDALHFVLELTDIYXPSEGEVLLLSPHSTP 210
Query: 315 ITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSF----VA 370
A L +G+ K V+VK G +G+ + + ++ V D G GD F +A
Sbjct: 211 ERAIAGFLEEGV--KEVIVKRGNQGASYYSANEQFHVESYPVEEVDPTGAGDCFGGAWIA 268
Query: 371 AVAFGFIHNMPTVNTLTIANAVGA 394
GF L ANA GA
Sbjct: 269 CRQLGF----DAHRALQYANACGA 288
>pdb|2AWD|A Chain A, Crystal Structure Of Lacc From Enterococcus Faecalis
pdb|2AWD|B Chain B, Crystal Structure Of Lacc From Enterococcus Faecalis
pdb|2F02|A Chain A, Crystal Structure Of Lacc From Enterococcus Faecalis In
Complex With Atp
pdb|2F02|B Chain B, Crystal Structure Of Lacc From Enterococcus Faecalis In
Complex With Atp
Length = 323
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 306 ESLTGL------RNPITAGQELLRKGLRT--KWVVVKMGPRGSILVTKSSISCAPAFKVN 357
E L GL NP+ A Q L K +W+V+ +G G+I +
Sbjct: 189 EELEGLLGQDFSENPLAAVQTALTKPXFAGIEWIVISLGKDGAIAKHHDQFYRVKIPTIQ 248
Query: 358 VTDTVGCGDSFVAAVAFGFIHNMPTVNTL 386
+ VG GD+ +A +A+G + P L
Sbjct: 249 AKNPVGSGDATIAGLAYGLAKDAPAAELL 277
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 128/349 (36%), Gaps = 50/349 (14%)
Query: 79 VKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNC-NVAIA 137
+ ++DV +G VDI L P S++ + + + P ++ GG+ N A
Sbjct: 3 LDNLDVICIGAAIVDI-----PLQPVSKN-----IFDVDSYPLERIAXTTGGDAINEATI 52
Query: 138 AARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLV 197
+RLG +G + G+F+LD + E I + + +D S +T + LV
Sbjct: 53 ISRLGHRTALXSRIGKDAAGQFILDHCRKENIDIQSLKQDV--------SIDTSINVGLV 104
Query: 198 DPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALE 257
F + + S W KL+ + + S+ LS A I ++
Sbjct: 105 TEDGERTFVTNRNGS-----LW--KLNIDDVDFARFSQAKL--------LSLASIFNSPL 149
Query: 258 YAAQVGTSIFFDPGPRGKSLSSGTPEEQ---------RALSYFXXXXXXXXXXXXEAESL 308
+ T IF R + + + + ALSY EA+ L
Sbjct: 150 LDGKALTEIFTQAKARQXIICADXIKPRLNETLDDICEALSYVDYLFPNFA----EAKLL 205
Query: 309 TGLRNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFK-VNVTDTVGCGDS 367
TG L G++T VV+K G G + PA + DT+G GD+
Sbjct: 206 TGKETLDEIADCFLACGVKT--VVIKTGKDGCFIKRGDXTXKVPAVAGITAIDTIGAGDN 263
Query: 368 FVAAVAFGFIHNMPTVNTLTIANAVGAATAMGCGAGRNVATLERVIELM 416
F + + ANA A + + GA V + V +L+
Sbjct: 264 FASGFIAALLEGKNLRECARFANATAAISVLSVGATTGVKNRKLVEQLL 312
>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1N|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1O|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1O|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1P|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Inosine
pdb|3B1Q|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
Length = 326
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 327 RTKWVVVKMGPRGSILVTKSSISCAPAFKVN-VTDTVGCGDSFVAAVAFGFIHNMPTVNT 385
R + +++ G G+ + + PA + V D GCGD+F + +G H
Sbjct: 213 RVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDWATA 272
Query: 386 LTIANAVGA 394
+A+ +GA
Sbjct: 273 GRLASLMGA 281
>pdb|2QHP|A Chain A, Crystal Structure Of Fructokinase (Np_810670.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A
Resolution
Length = 296
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%)
Query: 329 KWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTI 388
K +++ G GS + T +S KV V DTVG GDSF AA ++ +
Sbjct: 210 KXLILTCGINGSYVFTPGVVSFQETPKVPVADTVGAGDSFTAAFCASILNGKSVPEAHKL 269
Query: 389 ANAVGAATAMGCGA 402
A V A GA
Sbjct: 270 AVEVSAYVCTQSGA 283
>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
Length = 320
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 327 RTKWVVVKMGPRGSILVTKSSISCAPAFKVN-VTDTVGCGDSFVAAVAFGFIHNMPTVNT 385
R + +++ G G+ + + PA + V D GCGD+F + +G H
Sbjct: 221 RVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDWATA 280
Query: 386 LTIANAVGA 394
+A+ +GA
Sbjct: 281 GRLASLMGA 289
>pdb|2JG5|A Chain A, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
pdb|2JG5|B Chain B, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
Length = 306
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 315 ITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAF 374
I G+ L+ KG ++ V+V +G G+I + K A + V +TVG GDS VA +
Sbjct: 200 IKYGRLLVDKGAQS--VIVSLGGDGAIYIDKEISIKAVNPQGKVVNTVGSGDSTVAGMVA 257
Query: 375 GFIHNMPTVNTLTIANAVGAATAM 398
G + A A G ATA
Sbjct: 258 GIASGLSIEKAFQQAVACGTATAF 281
>pdb|3VAS|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine In Occluded Loop Conformation
pdb|3VAS|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine In Occluded Loop Conformation
Length = 370
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 327 RTKWVVVKMGPRGSILVTKSSISCAPAFKV------NVTDTVGCGDSFVAAVAFGFIHNM 380
R + V++ G + +L T SS S F V + DT G GD+F A +I
Sbjct: 276 RKRLVIITRG-KNPLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFAAGFIADYIRGK 334
Query: 381 PTVNTLTIANAVGAATAMGCGAG 403
P + +L AV AA + C +G
Sbjct: 335 PMITSLH--AAVKAAAYIICRSG 355
>pdb|3UQ6|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine And Amp
pdb|3UQ6|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine And Amp
pdb|3UQ9|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Tubercidin
pdb|3UQ9|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Tubercidin
Length = 372
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 327 RTKWVVVKMGPRGSILVTKSSISCAPAFKV------NVTDTVGCGDSFVAAVAFGFIHNM 380
R + V++ G + +L T SS S F V + DT G GD+F A +I
Sbjct: 278 RKRLVIITRG-KNPLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFAAGFIADYIRGK 336
Query: 381 PTVNTLTIANAVGAATAMGCGAG 403
P + +L AV AA + C +G
Sbjct: 337 PMITSLH--AAVKAAAYIICRSG 357
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
Length = 311
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 121/303 (39%), Gaps = 32/303 (10%)
Query: 125 YWE---AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGV 181
Y+E AG N +A + G +C I VG++ +G ++ L+ +G+ + M +
Sbjct: 27 YFEKHVAGSEANYCVAFIKQGNECGIIAKVGDDEFGYNAIEWLRGQGVDVSHMK-----I 81
Query: 182 DTSSASYETLLCWVLVDPSQRHG---FCSRADFSKEPAFSWMNKLSAEV--KTAIKHSKV 236
D S+ T + ++ QRH S + + ++ S +KLS E + +K + +
Sbjct: 82 DPSAP---TGIFFI-----QRHYPVPLKSESIYYRKG--SAGSKLSPEDVDEEYVKSADL 131
Query: 237 LFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGK--SLSSGTPEEQRALSYFXXX 294
+ +G S A A+ A ++ ++ FD R K S E + LS F
Sbjct: 132 VHSSGITLAISSTAK--EAVYKAFEIASNRSFDTNIRLKLWSAEEAKREILKLLSKFHLK 189
Query: 295 XXXXXXXXXEAESLTGLRNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAF 354
+++ + G +P A + + +V+K+GP+G+I+ + +
Sbjct: 190 FLITDTD--DSKIILGESDPDKAAKAFSD---YAEIIVMKLGPKGAIVYYDGKKYYSSGY 244
Query: 355 KVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAMGCGAGRNVATLERVIE 414
+V V D G GD+ + L A M G N+ T + +
Sbjct: 245 QVPVEDVTGAGDALGGTFLSLYYKGFEMEKALDYAIVASTLNVMIRGDQENLPTTKDIET 304
Query: 415 LMR 417
+R
Sbjct: 305 FLR 307
>pdb|3VAQ|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine
pdb|3VAQ|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
Adenosine
pdb|4DC3|A Chain A, Adenosine Kinase From Schistosoma Mansoni In Complex With
2- Fluoroadenosine
pdb|4DC3|B Chain B, Adenosine Kinase From Schistosoma Mansoni In Complex With
2- Fluoroadenosine
Length = 372
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 327 RTKWVVVKMGPRGSILVTKSSISCAPAFKV------NVTDTVGCGDSFVAAVAFGFIHNM 380
R + V++ G + +L T SS S F V + DT G GD+F A +I
Sbjct: 278 RKRLVIITRG-KNPLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFAAGFIADYIRGK 336
Query: 381 PTVNTLTIANAVGAATAMGCGAG 403
P + +L AV AA + C +G
Sbjct: 337 PMITSLH--AAVKAAAYIICRSG 357
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 178 TDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMN----KLSAEVKTAIKH 233
TDG+D S + + C S + G C+ A + EP +W++ +LSA V A+K
Sbjct: 486 TDGLDVSKLASTAMACATTYRNSDKRGGCNGARIALEPQRNWVSNNPTQLSA-VLDALKK 544
Query: 234 SKVLFCNGYGFDELSPALII-----SALEYAAQ 261
+ F G ++S A +I +A+E AA+
Sbjct: 545 VQSDFNGSNGNKKVSLADLIVLGGTAAVEKAAK 577
>pdb|4E69|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4E69|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4EBU|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502312)
From Oceanicola Granulosus, With Bound AmpADP CRYSTAL
FORM I
pdb|4EUM|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
pdb|4EUM|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
Length = 328
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 49/139 (35%), Gaps = 4/139 (2%)
Query: 244 FDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFXXXXXXXXXXXX 303
D+ A ++ AL A G +I FDP R + L +GT E +
Sbjct: 159 LDQCGRATLLRALAQARATGRTIAFDPNLRPR-LWAGTGEMTETIMQGAAVSDIALPSFE 217
Query: 304 EAESLTGLRNPITAGQELLRKGLRTKWVVVKMGPRG-SILVTKSSISCAPAFKVNVTDTV 362
+ + G P R G+R+ VVVK GP L V DT
Sbjct: 218 DEAAWFGDAGPDATADRYARAGVRS--VVVKNGPHAVHFLQDGRRGRVPVPPVAQVVDTT 275
Query: 363 GCGDSFVAAVAFGFIHNMP 381
GDSF A + + P
Sbjct: 276 AAGDSFNAGLLDSVLAGQP 294
>pdb|3I3Y|A Chain A, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|B Chain B, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|C Chain C, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|D Chain D, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3IKH|A Chain A, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|B Chain B, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|C Chain C, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|D Chain D, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
Length = 299
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 320 ELLRK-GLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSF 368
ELL+ G++T +V+ G G+ LV + PA DT G GD+F
Sbjct: 189 ELLQPYGVKT--LVITQGAAGAWLVQEGQRQFCPAVPAEALDTTGAGDTF 236
>pdb|3KTN|A Chain A, Crystal Structure Of A Putative 2-Keto-3-Deoxygluconate
Kinase From Enterococcus Faecalis
Length = 346
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 360 DTVGCGDSFVAAVAFGFIHNMPTVNTLTIA--NAVGAATAMG 399
D +G GD++ A + +G+ N +T A N V A T G
Sbjct: 274 DRIGAGDAYAAGILYGYSQNWSLEKAVTFATVNGVLAHTIQG 315
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,103,778
Number of Sequences: 62578
Number of extensions: 580703
Number of successful extensions: 1526
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1469
Number of HSP's gapped (non-prelim): 59
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)