Query 011562
Match_columns 483
No_of_seqs 338 out of 1772
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 02:44:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02341 pfkB-type carbohydrat 100.0 7.5E-63 1.6E-67 515.2 45.6 402 78-480 69-470 (470)
2 PRK11142 ribokinase; Provision 100.0 9.8E-44 2.1E-48 353.7 34.0 297 82-417 3-304 (306)
3 PTZ00292 ribokinase; Provision 100.0 1.6E-43 3.4E-48 355.4 34.5 305 79-417 13-325 (326)
4 PLN02323 probable fructokinase 100.0 1.2E-42 2.7E-47 349.5 34.3 308 80-418 9-327 (330)
5 PLN02813 pfkB-type carbohydrat 100.0 1.5E-42 3.2E-47 357.6 34.8 317 78-419 66-408 (426)
6 PLN02543 pfkB-type carbohydrat 100.0 2.9E-42 6.4E-47 357.3 32.5 323 82-421 126-492 (496)
7 cd01174 ribokinase Ribokinase 100.0 1.4E-41 3E-46 335.9 33.5 287 83-408 1-292 (292)
8 PLN02967 kinase 100.0 8.7E-42 1.9E-46 356.6 33.2 318 82-416 197-545 (581)
9 cd01168 adenosine_kinase Adeno 100.0 8E-42 1.7E-46 341.0 29.6 298 82-403 2-310 (312)
10 PTZ00247 adenosine kinase; Pro 100.0 1.6E-41 3.4E-46 343.4 31.1 305 79-403 3-335 (345)
11 PRK09850 pseudouridine kinase; 100.0 5.4E-41 1.2E-45 335.1 31.9 299 80-418 3-308 (313)
12 PRK09434 aminoimidazole ribosi 100.0 8.8E-41 1.9E-45 332.2 33.1 294 81-412 2-303 (304)
13 TIGR03828 pfkB 1-phosphofructo 100.0 1.3E-40 2.9E-45 330.8 32.8 295 86-420 4-303 (304)
14 KOG2855 Ribokinase [Carbohydra 100.0 2.7E-41 5.9E-46 324.6 26.7 313 80-419 8-327 (330)
15 PRK15074 inosine/guanosine kin 100.0 2.8E-40 6E-45 338.6 34.2 312 77-411 29-425 (434)
16 COG0524 RbsK Sugar kinases, ri 100.0 2.4E-40 5.2E-45 330.2 32.5 303 83-419 1-310 (311)
17 cd01944 YegV_kinase_like YegV- 100.0 2.1E-40 4.6E-45 327.1 31.7 284 83-401 1-289 (289)
18 TIGR02198 rfaE_dom_I rfaE bifu 100.0 1.9E-40 4.2E-45 331.4 31.7 303 78-416 4-314 (315)
19 PLN02379 pfkB-type carbohydrat 100.0 2E-39 4.3E-44 329.2 36.0 314 80-419 18-358 (367)
20 cd01945 ribokinase_group_B Rib 100.0 4.5E-40 9.8E-45 323.9 29.3 283 83-408 1-284 (284)
21 cd01167 bac_FRK Fructokinases 100.0 6.3E-40 1.4E-44 324.5 30.3 286 83-402 1-294 (295)
22 cd01166 KdgK 2-keto-3-deoxyglu 100.0 1.2E-39 2.6E-44 322.2 31.8 287 83-402 1-293 (294)
23 cd01942 ribokinase_group_A Rib 100.0 6.1E-40 1.3E-44 322.0 28.9 274 83-402 1-278 (279)
24 PRK13508 tagatose-6-phosphate 100.0 1.4E-39 3.1E-44 324.3 31.8 300 83-422 2-307 (309)
25 TIGR02152 D_ribokin_bact ribok 100.0 2.4E-39 5.2E-44 320.2 33.0 288 88-413 1-293 (293)
26 PRK09513 fruK 1-phosphofructok 100.0 2.8E-39 6.1E-44 322.6 32.7 300 84-423 5-310 (312)
27 cd01172 RfaE_like RfaE encodes 100.0 1.3E-39 2.8E-44 323.7 29.4 287 83-404 1-296 (304)
28 PF00294 PfkB: pfkB family car 100.0 1.3E-39 2.8E-44 322.9 24.9 291 81-408 1-300 (301)
29 TIGR03168 1-PFK hexose kinase, 100.0 1.7E-38 3.7E-43 315.7 32.9 294 86-419 4-302 (303)
30 TIGR01231 lacC tagatose-6-phos 100.0 9.3E-39 2E-43 318.5 30.9 300 84-422 2-307 (309)
31 PRK09954 putative kinase; Prov 100.0 9.7E-39 2.1E-43 325.1 31.5 294 82-416 58-359 (362)
32 cd01947 Guanosine_kinase_like 100.0 1.2E-38 2.7E-43 310.5 29.2 264 83-402 1-264 (265)
33 COG1105 FruK Fructose-1-phosph 100.0 3.3E-38 7.2E-43 303.6 31.0 298 84-422 3-307 (310)
34 cd01939 Ketohexokinase Ketohex 100.0 2.4E-38 5.2E-43 312.6 29.0 278 83-401 1-288 (290)
35 PRK10294 6-phosphofructokinase 100.0 7.1E-38 1.5E-42 312.1 32.1 298 84-419 5-307 (309)
36 cd01164 FruK_PfkB_like 1-phosp 100.0 6E-38 1.3E-42 309.7 31.0 280 84-402 3-288 (289)
37 cd01940 Fructoselysine_kinase_ 100.0 7.8E-38 1.7E-42 304.7 29.5 261 83-402 1-263 (264)
38 cd01941 YeiC_kinase_like YeiC- 100.0 4E-37 8.6E-42 303.4 29.2 278 83-399 1-288 (288)
39 PRK09813 fructoselysine 6-kina 100.0 3.1E-36 6.8E-41 292.9 28.6 258 82-402 1-259 (260)
40 PRK11316 bifunctional heptose 100.0 4.4E-36 9.5E-41 316.2 30.9 296 79-418 8-314 (473)
41 PLN02548 adenosine kinase 100.0 5.1E-36 1.1E-40 301.7 28.8 264 122-403 46-324 (332)
42 cd01943 MAK32 MAK32 kinase. M 100.0 9.9E-36 2.1E-40 298.5 21.9 275 83-402 1-304 (328)
43 cd01946 ribokinase_group_C Rib 100.0 1E-33 2.3E-38 277.7 26.6 266 84-402 2-275 (277)
44 PLN02630 pfkB-type carbohydrat 100.0 6.6E-33 1.4E-37 277.0 27.9 277 80-423 10-296 (335)
45 COG2870 RfaE ADP-heptose synth 100.0 8E-33 1.7E-37 267.5 26.5 293 78-414 7-309 (467)
46 cd01937 ribokinase_group_D Rib 100.0 9.5E-33 2.1E-37 267.4 26.8 254 83-398 1-254 (254)
47 KOG2854 Possible pfkB family c 100.0 3.9E-31 8.5E-36 251.0 24.2 300 84-403 9-335 (343)
48 KOG2947 Carbohydrate kinase [C 100.0 1.1E-27 2.3E-32 216.8 24.0 280 81-402 4-298 (308)
49 cd00287 ribokinase_pfkB_like r 100.0 2.5E-27 5.5E-32 219.9 20.9 190 83-377 1-196 (196)
50 PRK05756 pyridoxamine kinase; 99.8 2E-18 4.4E-23 170.0 21.6 165 231-399 72-255 (286)
51 cd01173 pyridoxal_pyridoxamine 99.8 9.6E-19 2.1E-23 169.4 18.8 164 232-398 71-250 (254)
52 TIGR00687 pyridox_kin pyridoxa 99.8 6.5E-18 1.4E-22 166.5 20.1 163 231-397 72-254 (286)
53 PRK07105 pyridoxamine kinase; 99.8 2E-17 4.4E-22 162.8 18.7 164 233-400 75-256 (284)
54 PRK12413 phosphomethylpyrimidi 99.8 2.2E-17 4.8E-22 159.8 18.6 163 232-399 67-242 (253)
55 PRK12412 pyridoxal kinase; Rev 99.8 5.1E-17 1.1E-21 158.5 19.5 160 234-399 73-246 (268)
56 TIGR00097 HMP-P_kinase phospho 99.7 1E-16 2.2E-21 155.3 20.1 159 233-399 67-240 (254)
57 cd01169 HMPP_kinase 4-amino-5- 99.7 2.7E-16 5.9E-21 151.1 21.2 160 233-398 68-240 (242)
58 PRK06427 bifunctional hydroxy- 99.7 1.1E-15 2.4E-20 149.0 25.0 161 233-399 73-248 (266)
59 PRK08176 pdxK pyridoxal-pyrido 99.7 5.5E-16 1.2E-20 152.1 22.8 162 232-398 87-265 (281)
60 PRK08573 phosphomethylpyrimidi 99.7 1.7E-15 3.7E-20 157.9 27.4 147 248-398 82-243 (448)
61 PTZ00344 pyridoxal kinase; Pro 99.7 8.2E-15 1.8E-19 145.0 22.4 158 235-398 78-257 (296)
62 PRK12616 pyridoxal kinase; Rev 99.7 3.8E-15 8.2E-20 145.4 19.6 161 233-399 74-249 (270)
63 KOG3009 Predicted carbohydrate 99.6 6.1E-15 1.3E-19 145.1 17.6 236 84-399 343-600 (614)
64 PTZ00347 phosphomethylpyrimidi 99.6 4.7E-14 1E-18 149.5 18.7 166 227-399 291-478 (504)
65 PLN02978 pyridoxal kinase 99.5 8.8E-13 1.9E-17 131.0 22.1 161 234-399 87-267 (308)
66 PLN02898 HMP-P kinase/thiamin- 99.5 5.1E-13 1.1E-17 141.6 19.5 160 234-399 79-253 (502)
67 PRK09517 multifunctional thiam 99.5 1.4E-12 3.1E-17 143.9 20.9 190 234-434 311-521 (755)
68 cd01171 YXKO-related B.subtili 99.5 8.8E-13 1.9E-17 127.7 16.4 158 229-400 73-236 (254)
69 PRK14713 multifunctional hydro 99.4 6.2E-12 1.3E-16 134.0 19.9 153 234-394 99-267 (530)
70 PF08543 Phos_pyr_kin: Phospho 99.4 9.7E-12 2.1E-16 119.7 18.2 160 233-398 60-233 (246)
71 cd01170 THZ_kinase 4-methyl-5- 99.4 1.1E-11 2.4E-16 118.7 18.5 165 224-397 40-220 (242)
72 TIGR00196 yjeF_cterm yjeF C-te 99.4 2.8E-11 6E-16 118.4 20.4 174 227-418 86-268 (272)
73 COG0351 ThiD Hydroxymethylpyri 99.4 3.6E-10 7.7E-15 107.2 24.7 159 234-398 73-244 (263)
74 COG2240 PdxK Pyridoxal/pyridox 99.4 6.3E-11 1.4E-15 112.8 19.4 177 217-398 55-249 (281)
75 PRK09355 hydroxyethylthiazole 99.1 7.4E-09 1.6E-13 100.6 18.4 162 225-396 46-223 (263)
76 PTZ00493 phosphomethylpyrimidi 99.1 5.9E-09 1.3E-13 102.9 17.3 159 234-399 74-285 (321)
77 TIGR00694 thiM hydroxyethylthi 99.0 3E-08 6.6E-13 95.5 17.9 161 223-393 39-215 (249)
78 KOG2599 Pyridoxal/pyridoxine/p 98.6 1.7E-06 3.7E-11 81.0 14.1 158 231-392 79-256 (308)
79 KOG2598 Phosphomethylpyrimidin 98.3 1.4E-05 2.9E-10 79.7 13.0 133 262-397 118-281 (523)
80 PF02110 HK: Hydroxyethylthiaz 98.2 0.00012 2.7E-09 69.5 16.8 159 225-392 41-214 (246)
81 COG2145 ThiM Hydroxyethylthiaz 97.9 0.00095 2.1E-08 63.0 17.3 158 224-391 46-220 (265)
82 PRK14039 ADP-dependent glucoki 97.7 0.0018 4E-08 66.6 17.9 259 122-425 85-388 (453)
83 PRK10565 putative carbohydrate 97.7 0.0019 4E-08 68.7 18.1 143 230-392 317-468 (508)
84 PRK03979 ADP-specific phosphof 97.7 0.0014 3E-08 67.7 15.7 72 232-309 221-305 (463)
85 PF01256 Carb_kinase: Carbohyd 97.7 0.0056 1.2E-07 58.6 18.7 167 228-416 62-240 (242)
86 PRK14038 ADP-dependent glucoki 97.5 0.019 4E-07 59.3 20.4 157 225-425 216-395 (453)
87 TIGR02045 P_fruct_ADP ADP-spec 97.4 0.01 2.3E-07 61.1 17.5 156 229-424 205-388 (446)
88 KOG3974 Predicted sugar kinase 96.7 0.021 4.6E-07 53.8 11.4 162 229-401 97-269 (306)
89 COG0063 Predicted sugar kinase 96.3 0.16 3.5E-06 49.7 14.9 167 231-418 99-279 (284)
90 PF04587 ADP_PFK_GK: ADP-speci 96.1 0.022 4.8E-07 59.5 8.8 77 227-309 203-291 (444)
91 cd01938 ADPGK_ADPPFK ADP-depen 95.1 0.29 6.2E-06 51.0 12.2 172 122-309 100-285 (445)
92 PRK09330 cell division protein 87.3 36 0.00079 34.9 16.6 142 128-300 22-165 (384)
93 PRK10076 pyruvate formate lyas 86.5 9.4 0.0002 35.8 11.1 84 233-326 38-128 (213)
94 COG0206 FtsZ Cell division GTP 84.9 23 0.00051 35.6 13.5 149 128-308 20-173 (338)
95 TIGR00065 ftsZ cell division p 82.5 37 0.0008 34.4 14.1 147 128-304 26-175 (349)
96 COG1180 PflA Pyruvate-formate 81.7 24 0.00051 34.2 11.9 83 233-325 83-172 (260)
97 cd02201 FtsZ_type1 FtsZ is a G 81.1 39 0.00084 33.5 13.5 143 127-300 8-152 (304)
98 cd02191 FtsZ FtsZ is a GTPase 80.8 48 0.001 32.8 14.0 143 127-300 8-152 (303)
99 PF10087 DUF2325: Uncharacteri 76.7 30 0.00066 27.7 9.4 41 227-270 42-82 (97)
100 COG4809 Archaeal ADP-dependent 76.5 94 0.002 31.7 16.5 80 228-312 220-310 (466)
101 PRK13018 cell division protein 75.4 1E+02 0.0022 31.6 15.9 148 128-306 37-188 (378)
102 COG1618 Predicted nucleotide k 74.3 32 0.0007 30.8 9.2 115 152-271 17-138 (179)
103 TIGR02826 RNR_activ_nrdG3 anae 72.9 24 0.00051 31.0 8.3 58 234-304 62-119 (147)
104 PF00070 Pyr_redox: Pyridine n 65.5 12 0.00025 28.8 4.3 46 127-172 5-58 (80)
105 COG1058 CinA Predicted nucleot 63.0 20 0.00043 34.5 6.2 43 225-270 52-94 (255)
106 TIGR02494 PFLE_PFLC glycyl-rad 58.1 1.5E+02 0.0032 29.0 11.8 81 235-325 127-214 (295)
107 PF13986 DUF4224: Domain of un 57.5 18 0.0004 25.0 3.6 28 299-326 2-29 (47)
108 PF06626 DUF1152: Protein of u 55.7 2.2E+02 0.0047 28.2 12.8 87 85-172 28-121 (297)
109 KOG0053 Cystathionine beta-lya 54.1 1.4E+02 0.0031 30.8 10.8 48 227-274 155-203 (409)
110 TIGR00334 5S_RNA_mat_M5 ribonu 53.8 57 0.0012 29.4 7.1 64 233-306 22-85 (174)
111 COG2873 MET17 O-acetylhomoseri 53.7 95 0.0021 31.6 9.2 114 133-302 92-206 (426)
112 COG0373 HemA Glutamyl-tRNA red 48.5 2.2E+02 0.0047 29.6 11.3 129 133-309 163-301 (414)
113 PRK09522 bifunctional glutamin 48.5 3.8E+02 0.0083 28.9 14.8 36 134-171 293-329 (531)
114 COG1646 Predicted phosphate-bi 47.8 68 0.0015 30.3 6.8 63 232-311 40-107 (240)
115 cd00757 ThiF_MoeB_HesA_family 47.4 2.2E+02 0.0048 26.7 10.6 36 228-268 106-141 (228)
116 COG0269 SgbH 3-hexulose-6-phos 45.0 1.4E+02 0.0031 27.9 8.5 90 231-336 78-172 (217)
117 PRK05967 cystathionine beta-ly 44.2 2.9E+02 0.0064 28.5 11.7 42 232-273 148-189 (395)
118 PRK06739 pyruvate kinase; Vali 41.9 3.9E+02 0.0085 27.1 12.1 80 226-305 222-309 (352)
119 PRK08114 cystathionine beta-ly 41.6 2.2E+02 0.0047 29.4 10.2 41 233-273 147-189 (395)
120 PRK11145 pflA pyruvate formate 41.3 2.6E+02 0.0056 26.4 10.2 84 235-326 72-162 (246)
121 PTZ00300 pyruvate kinase; Prov 41.1 3.8E+02 0.0082 28.3 11.9 140 138-322 156-303 (454)
122 PRK13397 3-deoxy-7-phosphohept 40.2 3.1E+02 0.0067 26.4 10.3 80 246-339 62-162 (250)
123 PF01884 PcrB: PcrB family; I 38.8 1E+02 0.0022 29.2 6.7 62 231-310 30-95 (230)
124 PLN02762 pyruvate kinase compl 38.6 5.3E+02 0.011 27.7 12.6 82 225-306 260-349 (509)
125 COG2117 Predicted subunit of t 37.2 90 0.002 27.8 5.5 51 126-176 7-59 (198)
126 COG0345 ProC Pyrroline-5-carbo 36.9 4E+02 0.0087 25.9 16.2 178 148-392 4-204 (266)
127 PRK09028 cystathionine beta-ly 36.8 2.5E+02 0.0054 29.0 9.8 42 232-273 145-186 (394)
128 TIGR02356 adenyl_thiF thiazole 36.2 3E+02 0.0064 25.3 9.4 36 228-268 106-141 (202)
129 COG2518 Pcm Protein-L-isoaspar 35.3 2.2E+02 0.0047 26.6 8.1 55 115-171 67-121 (209)
130 PHA00438 hypothetical protein 35.1 30 0.00065 26.5 2.0 17 361-377 46-62 (81)
131 KOG4184 Predicted sugar kinase 34.8 3E+02 0.0065 27.8 9.2 72 233-309 238-316 (478)
132 COG4034 Uncharacterized protei 34.7 4.4E+02 0.0095 25.6 13.1 86 86-172 43-135 (328)
133 TIGR00177 molyb_syn molybdenum 33.8 1E+02 0.0022 26.7 5.5 34 131-166 29-62 (144)
134 PRK06702 O-acetylhomoserine am 33.8 4.6E+02 0.01 27.4 11.3 41 232-272 146-186 (432)
135 TIGR01093 aroD 3-dehydroquinat 33.7 4E+02 0.0087 24.9 12.2 97 233-342 92-194 (228)
136 TIGR01324 cysta_beta_ly_B cyst 33.5 3.1E+02 0.0068 27.9 9.9 42 232-273 134-175 (377)
137 TIGR01768 GGGP-family geranylg 33.1 1.1E+02 0.0024 28.9 5.9 63 232-311 26-92 (223)
138 PRK04169 geranylgeranylglycery 32.5 1.1E+02 0.0023 29.1 5.8 74 231-323 30-107 (232)
139 PLN02461 Probable pyruvate kin 32.3 6.5E+02 0.014 27.0 12.0 82 225-306 249-338 (511)
140 PRK00188 trpD anthranilate pho 32.2 5.3E+02 0.012 25.9 17.0 37 134-172 95-132 (339)
141 PF05368 NmrA: NmrA-like famil 31.4 3.2E+02 0.0069 25.2 9.0 44 225-268 56-99 (233)
142 TIGR01769 GGGP geranylgeranylg 31.3 1.4E+02 0.003 27.8 6.2 63 232-311 23-90 (205)
143 PTZ00066 pyruvate kinase; Prov 31.3 5.1E+02 0.011 27.8 11.1 82 225-306 265-354 (513)
144 cd00885 cinA Competence-damage 31.2 1.2E+02 0.0025 27.3 5.6 19 154-172 18-36 (170)
145 PF10911 DUF2717: Protein of u 31.1 37 0.00081 25.9 1.9 18 360-377 45-62 (77)
146 PF01118 Semialdhyde_dh: Semia 30.9 2.8E+02 0.006 22.9 7.6 36 231-273 64-99 (121)
147 PRK07582 cystathionine gamma-l 30.8 3.7E+02 0.0081 27.2 10.0 41 232-272 131-171 (366)
148 PRK07050 cystathionine beta-ly 30.8 4.1E+02 0.0089 27.2 10.3 41 232-272 149-189 (394)
149 cd00562 NifX_NifB This CD repr 30.7 85 0.0018 24.9 4.3 39 129-172 48-86 (102)
150 PF00224 PK: Pyruvate kinase, 30.4 1.9E+02 0.004 29.3 7.5 140 138-322 185-332 (348)
151 PF01053 Cys_Met_Meta_PP: Cys/ 30.2 1.5E+02 0.0033 30.4 6.9 40 233-272 140-180 (386)
152 PRK15452 putative protease; Pr 30.0 4.3E+02 0.0093 27.8 10.3 42 231-272 21-68 (443)
153 COG0547 TrpD Anthranilate phos 30.0 5.9E+02 0.013 25.7 20.2 202 134-418 97-318 (338)
154 COG1448 TyrB Aspartate/tyrosin 30.0 6.3E+02 0.014 26.0 13.8 45 230-274 168-216 (396)
155 PRK03673 hypothetical protein; 29.8 1.2E+02 0.0026 31.3 6.1 35 131-167 23-57 (396)
156 PRK14607 bifunctional glutamin 28.9 7.6E+02 0.016 26.6 17.8 154 230-420 334-512 (534)
157 PRK02412 aroD 3-dehydroquinate 28.3 5.3E+02 0.012 24.6 12.3 96 234-341 110-211 (253)
158 COG0626 MetC Cystathionine bet 28.1 4.4E+02 0.0096 27.2 9.7 43 232-274 148-190 (396)
159 PLN02623 pyruvate kinase 28.0 7.2E+02 0.016 27.1 11.6 78 227-304 335-420 (581)
160 PF11469 Ribonucleas_3_2: Ribo 27.9 90 0.0019 25.5 3.7 31 359-389 53-84 (120)
161 PF00994 MoCF_biosynth: Probab 27.8 1.5E+02 0.0033 25.4 5.7 22 153-174 15-36 (144)
162 COG0826 Collagenase and relate 27.4 4.6E+02 0.01 26.5 9.6 75 232-308 25-106 (347)
163 PF09587 PGA_cap: Bacterial ca 27.3 4.7E+02 0.01 24.8 9.5 40 134-174 67-111 (250)
164 COG0521 MoaB Molybdopterin bio 27.1 2.4E+02 0.0053 25.3 6.7 18 154-171 26-43 (169)
165 PLN02765 pyruvate kinase 27.0 7.2E+02 0.016 26.8 11.3 81 225-306 263-351 (526)
166 PRK01215 competence damage-ind 26.4 2.4E+02 0.0052 27.3 7.2 75 154-270 22-96 (264)
167 PRK08247 cystathionine gamma-s 26.4 5E+02 0.011 26.2 10.0 41 232-272 135-175 (366)
168 cd00288 Pyruvate_Kinase Pyruva 26.3 6.9E+02 0.015 26.6 11.1 91 228-322 232-330 (480)
169 PRK08134 O-acetylhomoserine am 26.0 5.6E+02 0.012 26.7 10.4 60 232-301 148-207 (433)
170 PF02659 DUF204: Domain of unk 25.9 1.6E+02 0.0035 21.6 4.7 26 366-392 4-29 (67)
171 PRK13575 3-dehydroquinate dehy 25.6 5.8E+02 0.013 24.2 10.7 99 233-342 97-201 (238)
172 PTZ00058 glutathione reductase 25.4 84 0.0018 34.1 4.3 75 27-148 2-77 (561)
173 PLN00093 geranylgeranyl diphos 24.9 1.6E+02 0.0034 31.0 6.0 19 131-149 51-69 (450)
174 PRK04148 hypothetical protein; 24.8 2.5E+02 0.0053 24.2 6.2 35 231-270 75-109 (134)
175 cd01485 E1-1_like Ubiquitin ac 24.8 5.4E+02 0.012 23.5 9.8 38 227-269 107-144 (198)
176 PF00919 UPF0004: Uncharacteri 24.6 3.1E+02 0.0068 22.0 6.5 60 232-299 35-97 (98)
177 PRK05826 pyruvate kinase; Prov 24.6 4E+02 0.0086 28.2 8.9 129 137-306 181-318 (465)
178 TIGR02990 ectoine_eutA ectoine 24.5 3.4E+02 0.0074 25.8 7.8 41 133-174 110-151 (239)
179 TIGR00200 cinA_nterm competenc 24.3 2.1E+02 0.0046 29.7 6.8 21 154-174 19-39 (413)
180 PF05762 VWA_CoxE: VWA domain 24.3 2.4E+02 0.0052 26.4 6.6 66 231-299 148-214 (222)
181 PRK07251 pyridine nucleotide-d 24.3 94 0.002 32.3 4.3 31 79-148 1-32 (438)
182 TIGR02495 NrdG2 anaerobic ribo 24.1 5.2E+02 0.011 23.1 12.2 81 234-326 63-154 (191)
183 PF12770 CHAT: CHAT domain 23.8 5.4E+02 0.012 24.5 9.4 79 292-394 187-267 (287)
184 TIGR02012 tigrfam_recA protein 23.7 7.4E+02 0.016 24.7 10.5 76 81-174 32-110 (321)
185 PRK08133 O-succinylhomoserine 23.5 4.5E+02 0.0098 26.9 9.1 39 233-272 146-185 (390)
186 TIGR02045 P_fruct_ADP ADP-spec 23.0 50 0.0011 34.5 1.9 28 125-152 86-115 (446)
187 PRK06115 dihydrolipoamide dehy 23.0 1E+02 0.0023 32.4 4.4 31 79-148 1-32 (466)
188 PRK05613 O-acetylhomoserine am 22.9 4.6E+02 0.01 27.4 9.1 40 233-272 155-194 (437)
189 PRK05968 hypothetical protein; 22.9 1.9E+02 0.0042 29.5 6.2 42 231-272 145-186 (389)
190 COG0520 csdA Selenocysteine ly 22.7 8.6E+02 0.019 25.1 13.7 42 232-274 161-203 (405)
191 COG1249 Lpd Pyruvate/2-oxoglut 22.7 1.2E+02 0.0025 32.1 4.5 52 121-172 173-232 (454)
192 cd00758 MoCF_BD MoCF_BD: molyb 22.5 2E+02 0.0043 24.4 5.3 18 154-171 18-35 (133)
193 KOG0174 20S proteasome, regula 22.2 45 0.00097 30.4 1.1 45 361-405 146-191 (224)
194 TIGR02355 moeB molybdopterin s 22.1 6.8E+02 0.015 23.7 10.2 37 227-268 108-144 (240)
195 COG2876 AroA 3-deoxy-D-arabino 22.1 5.1E+02 0.011 25.2 8.2 86 246-347 92-197 (286)
196 PRK10017 colanic acid biosynth 21.9 7.5E+02 0.016 25.8 10.3 74 226-303 110-185 (426)
197 PF10678 DUF2492: Protein of u 21.7 1.8E+02 0.0038 22.6 4.2 35 134-168 26-60 (78)
198 PF00308 Bac_DnaA: Bacterial d 21.7 6.1E+02 0.013 23.5 8.9 81 225-308 89-174 (219)
199 TIGR03128 RuMP_HxlA 3-hexulose 21.7 4.1E+02 0.0089 24.1 7.7 57 232-301 75-133 (206)
200 COG1433 Uncharacterized conser 21.7 1.2E+02 0.0026 25.7 3.5 40 128-172 51-90 (121)
201 PRK03670 competence damage-ind 21.5 1.5E+02 0.0033 28.5 4.8 18 339-356 144-162 (252)
202 cd01492 Aos1_SUMO Ubiquitin ac 21.5 5.5E+02 0.012 23.5 8.3 36 228-268 105-140 (197)
203 TIGR00696 wecB_tagA_cpsF bacte 21.3 3.1E+02 0.0067 24.8 6.5 19 250-268 35-53 (177)
204 cd02752 MopB_Formate-Dh-Na-lik 21.2 4.2E+02 0.009 29.4 8.6 91 231-324 167-267 (649)
205 cd00851 MTH1175 This uncharact 21.1 1.3E+02 0.0029 23.7 3.8 39 129-172 50-88 (103)
206 PRK08010 pyridine nucleotide-d 21.0 1.2E+02 0.0027 31.4 4.4 31 79-148 1-32 (441)
207 PF02579 Nitro_FeMo-Co: Dinitr 20.8 52 0.0011 25.7 1.2 40 128-172 39-78 (94)
208 COG0528 PyrH Uridylate kinase 20.8 7.4E+02 0.016 23.6 10.0 49 125-174 49-101 (238)
209 cd02202 FtsZ_type2 FtsZ is a G 20.7 8.8E+02 0.019 24.5 13.8 74 225-300 84-166 (349)
210 COG1712 Predicted dinucleotide 20.5 7.5E+02 0.016 23.6 9.2 28 147-174 2-29 (255)
211 PRK08641 sdhA succinate dehydr 20.5 1.1E+02 0.0025 33.3 4.1 19 131-149 15-33 (589)
212 TIGR02493 PFLA pyruvate format 20.4 6.9E+02 0.015 23.1 11.7 84 235-326 67-157 (235)
213 PRK13762 tRNA-modifying enzyme 20.3 8.6E+02 0.019 24.2 11.2 82 234-326 130-222 (322)
214 TIGR03569 NeuB_NnaB N-acetylne 20.1 3.4E+02 0.0074 27.3 7.0 25 246-270 72-96 (329)
215 PRK15447 putative protease; Pr 20.0 8.4E+02 0.018 24.0 12.0 73 232-309 27-104 (301)
No 1
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=7.5e-63 Score=515.21 Aligned_cols=402 Identities=74% Similarity=1.194 Sum_probs=348.7
Q ss_pred CCCCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhh
Q 011562 78 GVKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYG 157 (483)
Q Consensus 78 ~~~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g 157 (483)
.++|++|+++|++++|+++.++++|.+++......+..+..+++....+.+||++|+|++|++||.++.++|.||+|.+|
T Consensus 69 ~~~~~~vl~lG~~~vD~i~~V~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~NvAvaLarLG~~v~lig~VG~D~~G 148 (470)
T PLN02341 69 AGKEIDVATLGNLCVDIVLPVPELPPPSREERKAYMEELAASPPDKKSWEAGGNCNFAIAAARLGLRCSTIGHVGDEIYG 148 (470)
T ss_pred ccccccEEEECCcceeEEEecCCCCCCCHHHHHHHHHhhcccccccceecCChHHHHHHHHHHcCCCeEEEEEecCcHHH
Confidence 45788999999999999999999999887554344444444444445555666899999999999999999999999999
Q ss_pred HHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEE
Q 011562 158 RFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVL 237 (483)
Q Consensus 158 ~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v 237 (483)
+++++.|+++||+++++...++..+.....++|+.++++++++|++.++...++......+++..+.....+.++++|+|
T Consensus 149 ~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~adiv 228 (470)
T PLN02341 149 KFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEPAFSWISKLSAEAKMAIRQSKAL 228 (470)
T ss_pred HHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeeccccccccchhhhhcccHHHHhhhhcCCEE
Confidence 99999999999999998766543322233467999999999999887766555443333344444444556678999999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHHHH
Q 011562 238 FCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITA 317 (483)
Q Consensus 238 ~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~ 317 (483)
|++||.+.+.+.+.+.++++.+++.|++|++|++++...+|...+...+.+..+++++|++++|++|+..++|..+..++
T Consensus 229 ~lsg~~~~~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~~~Dil~~Ne~Ea~~l~g~~~~~~a 308 (470)
T PLN02341 229 FCNGYVFDELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSEEAEALTGIRNPILA 308 (470)
T ss_pred EEeceeCCcCCHHHHHHHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCCHHHH
Confidence 99999877788899999999999999999999998765555555555667889999999999999999999999889999
Q ss_pred HHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 011562 318 GQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATA 397 (483)
Q Consensus 318 ~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v 397 (483)
++.+++.|.+.+.||||+|++|++++++++.+++|+++++++|||||||+|+|||++++++|+++++|+++|+++||+++
T Consensus 309 ~~~l~~~g~~~k~VVVTlG~~Ga~~~~~~~~~~vpa~~v~vVDTtGAGDaF~Agfl~gll~G~~l~eal~~A~a~aA~~v 388 (470)
T PLN02341 309 GQELLRPGIRTKWVVVKMGSKGSILVTRSSVSCAPAFKVNVVDTVGCGDSFAAAIALGYIHNLPLVNTLTLANAVGAATA 388 (470)
T ss_pred HHHHHhcCCCCCEEEEeeCCCCeEEEECCeeEEeCCCCcCCCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 99998877655889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCHHHHHHHHHhcCCCcchhhHHHHhhhcccccCccccccccccCCcCccceeeHHHHHHhhhhccccccc
Q 011562 398 MGCGAGRNVATLERVIELMRASNLNEDNAFWNELLDQNVNAENITFLSRFGINGSSNSLNHVNLQKVVSELLPKLEYSQL 477 (483)
Q Consensus 398 ~~~G~~~~~p~~~ev~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (483)
++.|+..++|++++|.++|++...+++..||+++. +++.+.++.+|+|+++||+++++++|+++||||||||+||+++.
T Consensus 389 ~~~Ga~~~~p~~~ev~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (470)
T PLN02341 389 MGCGAGRNVATLEKVLELLRASNLNEDDTFWAELL-KNSDCSEISFLSKMAINGGSNGIVRVAATKVVSELLPSLEEARE 467 (470)
T ss_pred cCcCCCCCCCCHHHHHHHHHhcCCCcchhHHHHhh-cccccchhhhhhhhhhccCcccchhHHHHHHHHHHHHHHHhhhh
Confidence 99999989999999999999999999999999999 88999999999999999999999999999999999999999999
Q ss_pred ccc
Q 011562 478 EGK 480 (483)
Q Consensus 478 ~~~ 480 (483)
+|+
T Consensus 468 ~~~ 470 (470)
T PLN02341 468 RGI 470 (470)
T ss_pred ccC
Confidence 875
No 2
>PRK11142 ribokinase; Provisional
Probab=100.00 E-value=9.8e-44 Score=353.73 Aligned_cols=297 Identities=25% Similarity=0.369 Sum_probs=246.0
Q ss_pred ccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHH
Q 011562 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (483)
Q Consensus 82 ~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~ 161 (483)
.+|+|+|++++|+++.++++|.++...+. ......+||.+.|+|++|++||.++.++|.+|+|.+|++++
T Consensus 3 ~~i~~iG~~~~D~~~~~~~~p~~~~~~~~----------~~~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~ 72 (306)
T PRK11142 3 GKLVVLGSINADHVLNLESFPRPGETLTG----------RHYQVAFGGKGANQAVAAARLGADIAFIACVGDDSIGESMR 72 (306)
T ss_pred CcEEEECCceeeEEEEeCCCCCCCCeeEe----------ccceecCCCcHHHHHHHHHhcCCcEEEEEEECCChhHHHHH
Confidence 46999999999999999999887754422 13455678889999999999999999999999999999999
Q ss_pred HHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEec
Q 011562 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNG 241 (483)
Q Consensus 162 ~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG 241 (483)
+.|+++||+++++...++. +|+.++++++++|++.+............+.+ +...+.+..++++|+++
T Consensus 73 ~~L~~~gV~~~~i~~~~~~--------~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~v~~~~ 140 (306)
T PRK11142 73 QQLAKDGIDTAPVSVIKGE--------STGVALIFVNDEGENSIGIHAGANAALTPALV----EAHRELIANADALLMQL 140 (306)
T ss_pred HHHHHcCCChhhEEEcCCC--------CCCEEEEEECCCCCEEEEEeCCccccCCHHHH----HHHHhhhccCCEEEEeC
Confidence 9999999999999766654 38888888998888876544332211111111 12235578999999984
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC-----CHHH
Q 011562 242 YGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NPIT 316 (483)
Q Consensus 242 ~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~-----~~~~ 316 (483)
..+.+.+.++++.++++|+++++|++.... ....+++++|++++|++|++.++|.. +..+
T Consensus 141 ----~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~-----------~~~~~~~~~dil~~n~~Ea~~l~g~~~~~~~~~~~ 205 (306)
T PRK11142 141 ----ETPLETVLAAAKIAKQHGTKVILNPAPARE-----------LPDELLALVDIITPNETEAEKLTGIRVEDDDDAAK 205 (306)
T ss_pred ----CCCHHHHHHHHHHHHHcCCEEEEECCCCcc-----------cCHHHHhhCCEEcCCHHHHHHHhCCCCCChHHHHH
Confidence 445678889999999999999999975322 12368889999999999999999853 3456
Q ss_pred HHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 011562 317 AGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAAT 396 (483)
Q Consensus 317 ~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~ 396 (483)
+++.+.+.|+ +.+|||+|++|++++++++.+++|+++++++||+||||+|+|||++++++|+++++|+++|+++|+.+
T Consensus 206 ~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvDt~GAGDaF~Agfi~~l~~g~~~~~al~~a~~~Aa~~ 283 (306)
T PRK11142 206 AAQVLHQKGI--ETVLITLGSRGVWLSENGEGQRVPGFRVQAVDTIAAGDTFNGALVTALLEGKPLPEAIRFAHAAAAIA 283 (306)
T ss_pred HHHHHHHhCC--CeEEEEECCCcEEEEeCCcceeccCCCcccccCCCchhHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 6777877766 78999999999999998888899999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCHHHHHHHHH
Q 011562 397 AMGCGAGRNVATLERVIELMR 417 (483)
Q Consensus 397 v~~~G~~~~~p~~~ev~~~l~ 417 (483)
+++.|+..++|++++++++++
T Consensus 284 ~~~~G~~~~~~~~~~~~~~~~ 304 (306)
T PRK11142 284 VTRKGAQPSIPWREEIDAFLQ 304 (306)
T ss_pred cCCCcccccCCCHHHHHHHHh
Confidence 999998777899999988765
No 3
>PTZ00292 ribokinase; Provisional
Probab=100.00 E-value=1.6e-43 Score=355.44 Aligned_cols=305 Identities=21% Similarity=0.326 Sum_probs=248.7
Q ss_pred CCCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhH
Q 011562 79 VKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGR 158 (483)
Q Consensus 79 ~~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~ 158 (483)
..+++|+|+|.+++|+++.++++|.++...+. ......+||++.|+|++|++||.++.++|.+|+|.+|+
T Consensus 13 ~~~~~vlviG~~~vD~~~~~~~~~~~~~~~~~----------~~~~~~~GG~~~NvA~~la~lG~~~~~is~vG~D~~g~ 82 (326)
T PTZ00292 13 EAEPDVVVVGSSNTDLIGYVDRMPQVGETLHG----------TSFHKGFGGKGANQAVMASKLGAKVAMVGMVGTDGFGS 82 (326)
T ss_pred CCCCCEEEEccceeeEEEecCCCCCCCCceee----------cCceeCCCCcHHHHHHHHHHcCCCeEEEEEECCChhHH
Confidence 35778999999999999999999887764422 13355678889999999999999999999999999999
Q ss_pred HHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEEC-CCCCcccccccCCCCChhhhhhhhccHHHHHhhcC-CcE
Q 011562 159 FLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVD-PSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKH-SKV 236 (483)
Q Consensus 159 ~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~ 236 (483)
++++.|++.||+++++...++. +|+.++++++ .+|++.++...+.......+.+ +.....+.. +++
T Consensus 83 ~i~~~l~~~GI~~~~~~~~~~~--------~t~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~----~~~~~~i~~~~~~ 150 (326)
T PTZ00292 83 DTIKNFKRNGVNTSFVSRTENS--------STGLAMIFVDTKTGNNEIVIIPGANNALTPQMV----DAQTDNIQNICKY 150 (326)
T ss_pred HHHHHHHHcCCChhhEEEcCCC--------CCcEEEEEEeCCCCceEEEEeCCccccCCHHHH----HHHHHHhhhhCCE
Confidence 9999999999999999765543 4888889988 7788877654433222222221 122234566 899
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC----
Q 011562 237 LFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR---- 312 (483)
Q Consensus 237 v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~---- 312 (483)
+++++ ..+.+...++++.++++|+++++|++++...+ ..+.+..+++++|++++|++|++.++|..
T Consensus 151 ~~~~~----~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~------~~~~~~~~l~~~dii~~n~~E~~~l~g~~~~~~ 220 (326)
T PTZ00292 151 LICQN----EIPLETTLDALKEAKERGCYTVFNPAPAPKLA------EVEIIKPFLKYVSLFCVNEVEAALITGMEVTDT 220 (326)
T ss_pred EEECC----CCCHHHHHHHHHHHHHcCCEEEEECCCCcccc------ccccHHHHHhcCCEEcCCHHHHHHHhCCCCCCh
Confidence 99874 45667888899999999999999998654321 12457788999999999999999998853
Q ss_pred -CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCe-eEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHH
Q 011562 313 -NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSS-ISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIAN 390 (483)
Q Consensus 313 -~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~-~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~ 390 (483)
+..++++.+++.|+ +.||||+|++|++++++++ .+++|+++++++||+||||+|+|||++++++|+++++|+++|+
T Consensus 221 ~~~~~~~~~l~~~g~--~~vvvT~G~~Ga~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~~~~al~~a~ 298 (326)
T PTZ00292 221 ESAFKASKELQQLGV--ENVIITLGANGCLIVEKENEPVHVPGKRVKAVDTTGAGDCFVGSMAYFMSRGKDLKESCKRAN 298 (326)
T ss_pred hHHHHHHHHHHHcCC--CeEEEEeCCCcEEEEeCCCceEEccCCccccCCCcchHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 23456677777765 7899999999999998765 5889999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCCCCHHHHHHHHH
Q 011562 391 AVGAATAMGCGAGRNVATLERVIELMR 417 (483)
Q Consensus 391 aaAa~~v~~~G~~~~~p~~~ev~~~l~ 417 (483)
++|++++++.|+...+|+++++++.++
T Consensus 299 a~Aa~~v~~~G~~~~~~~~~~~~~~~~ 325 (326)
T PTZ00292 299 RIAAISVTRHGTQSSYPHPSELPADVK 325 (326)
T ss_pred HHHHHHcCCCCccccCCCHHHHHHHhc
Confidence 999999999999878899999987654
No 4
>PLN02323 probable fructokinase
Probab=100.00 E-value=1.2e-42 Score=349.54 Aligned_cols=308 Identities=25% Similarity=0.360 Sum_probs=245.1
Q ss_pred CCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHH
Q 011562 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (483)
Q Consensus 80 ~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~ 159 (483)
++++|+++|++++|++..++..|.... ......+||.+.|+|.+|++||.++.++|.+|+|.+|++
T Consensus 9 ~~~~i~~iG~~~vD~~~~~~~~~~~~~--------------~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~ 74 (330)
T PLN02323 9 ESSLVVCFGEMLIDFVPTVSGVSLAEA--------------PAFKKAPGGAPANVAVGISRLGGSSAFIGKVGDDEFGHM 74 (330)
T ss_pred CCCcEEEechhhhhhccCCCCCCcccc--------------cceeecCCChHHHHHHHHHhcCCceeEEEEecCChhHHH
Confidence 567899999999999988776654211 123455688899999999999999999999999999999
Q ss_pred HHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCccccccc--CCCCChhhhhhhhccHHHHHhhcCCcEE
Q 011562 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRA--DFSKEPAFSWMNKLSAEVKTAIKHSKVL 237 (483)
Q Consensus 160 i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~l~~~~~v 237 (483)
+++.|++.||+++++.+.++.+ |+.+++.++++|++.+.... ........+ .+. .+.+..++++
T Consensus 75 i~~~L~~~GI~~~~v~~~~~~~--------t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~ 140 (330)
T PLN02323 75 LADILKKNGVNNEGVRFDPGAR--------TALAFVTLRSDGEREFMFYRNPSADMLLRES---ELD---LDLIRKAKIF 140 (330)
T ss_pred HHHHHHHcCCCCcceEEcCCCC--------ceEEEEEECCCCceeEEeecCCchhccCChH---HCC---hHHHccCCEE
Confidence 9999999999999998766543 88888988888888765432 111011111 111 2346788999
Q ss_pred EEecCCCC-CCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCH-H
Q 011562 238 FCNGYGFD-ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNP-I 315 (483)
Q Consensus 238 ~isG~~~~-~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~-~ 315 (483)
|++++... +.....+..+++.+++.|.+|++|++++... |......++.+.++++++|++++|++|+..++|.... .
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~-~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~g~~~~~~ 219 (330)
T PLN02323 141 HYGSISLITEPCRSAHLAAMKIAKEAGALLSYDPNLRLPL-WPSAEAAREGIMSIWDEADIIKVSDEEVEFLTGGDDPDD 219 (330)
T ss_pred EEechhccCchHHHHHHHHHHHHHHcCCEEEEcCCCChhh-ccCHHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCccH
Confidence 98876542 2223566788999999999999999876543 3333445667888999999999999999999986532 2
Q ss_pred HHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCC-------HHHHHHH
Q 011562 316 TAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMP-------TVNTLTI 388 (483)
Q Consensus 316 ~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~-------l~~al~~ 388 (483)
+.+.+++..|. +.||||+|++|++++++++.+++|+++++++|||||||+|+|||++++++|++ +++|+++
T Consensus 220 ~~~~~~~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~Agfl~~l~~g~~~~~~~~~l~~al~~ 297 (330)
T PLN02323 220 DTVVKLWHPNL--KLLLVTEGEEGCRYYTKDFKGRVEGFKVKAVDTTGAGDAFVGGLLSQLAKDLSLLEDEERLREALRF 297 (330)
T ss_pred HHHHHHHhcCC--CEEEEecCCCceEEEeCCCceEeCCccCCCCCCCCcHHHHHHHHHHHHHcCCccccchHHHHHHHHH
Confidence 22234555555 78999999999999998877889999999999999999999999999999986 8999999
Q ss_pred HHHHHHHHhcccCCCCCCCCHHHHHHHHHh
Q 011562 389 ANAVGAATAMGCGAGRNVATLERVIELMRA 418 (483)
Q Consensus 389 A~aaAa~~v~~~G~~~~~p~~~ev~~~l~~ 418 (483)
|+++|++++++.|+...+|+++++++++++
T Consensus 298 a~a~Aa~~v~~~g~~~~~~~~~~v~~~l~~ 327 (330)
T PLN02323 298 ANACGAITTTERGAIPALPTKEAVLKLLKK 327 (330)
T ss_pred HHHHHHHHHhccCCccCCCCHHHHHHHHHH
Confidence 999999999999987789999999998875
No 5
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.5e-42 Score=357.59 Aligned_cols=317 Identities=24% Similarity=0.283 Sum_probs=252.8
Q ss_pred CCCCccEEEECCceeEEEecCCC-------CCCCChhh-----hhHHhhhhccCCCCCccccCCcHHHHHHHHHHcC---
Q 011562 78 GVKSIDVATLGNLCVDIVLNVPQ-------LPPPSRDA-----RKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLG--- 142 (483)
Q Consensus 78 ~~~~~~VlviG~~~iD~~~~v~~-------~p~~~~~~-----~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG--- 142 (483)
..+.++|+++|++++|++..+++ +|+++... .....+.+.. .......||++.|+|++++|||
T Consensus 66 ~~~~~~vl~iG~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~--~~~~~~~GG~~~N~AvalarLG~~~ 143 (426)
T PLN02813 66 VPERWDVLGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDG--CSYKASAGGSLSNTLVALARLGSQS 143 (426)
T ss_pred CCCcceEEEeCCceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhc--cCceEecCcHHHHHHHHHHHhcccc
Confidence 34789999999999999999999 99887322 1111223321 1345667888999999999999
Q ss_pred -----CceEEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhh
Q 011562 143 -----LDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAF 217 (483)
Q Consensus 143 -----~~v~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~ 217 (483)
.+|.++|.||+|.+|+++++.|++.||++..+...+ .+|+.++++++++|+++++...+.......
T Consensus 144 ~~~~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~~~---------~~Tg~~~ilv~~~gertii~~~Ga~~~l~~ 214 (426)
T PLN02813 144 AAGPALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPVKD---------GTTGTVIVLTTPDAQRTMLSYQGTSSTVNY 214 (426)
T ss_pred ccCCCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceecCC---------CCceEEEEEEcCCCCceeeeccCchhhCCc
Confidence 799999999999999999999999999998775332 248999999999999988765443221111
Q ss_pred hhhhhccHHHHHhhcCCcEEEEecCCCC-CCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHH-HHHHhhhcCC
Q 011562 218 SWMNKLSAEVKTAIKHSKVLFCNGYGFD-ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQ-RALSYFLSTS 295 (483)
Q Consensus 218 ~~~~~l~~~~~~~l~~~~~v~isG~~~~-~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~-~~l~~ll~~~ 295 (483)
+ +...+.+++++++|++||.+. ....+.+.++++.++++|++|++|++.... ....+ ..+..+++++
T Consensus 215 ~------~~~~~~i~~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~-----~~~~~~~l~~~ll~~v 283 (426)
T PLN02813 215 D------SCLASAISKSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSC-----IERHRDDFWDVMGNYA 283 (426)
T ss_pred c------ccCHHHHhcCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcch-----hhhhHHHHHHHHHhcC
Confidence 1 112345788999999998642 223478889999999999999999864210 11122 2345566899
Q ss_pred CEEEcCHHHHHHhhCC---CCHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHH
Q 011562 296 DVLLLTSDEAESLTGL---RNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAV 372 (483)
Q Consensus 296 dil~~N~~Ea~~l~g~---~~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~ 372 (483)
|++++|++|+..++|. .+..++++.|. +++ +.||||+|++|++++.+++.+++|++++++||||||||+|+|||
T Consensus 284 Dil~~Ne~Ea~~l~g~~~~~~~~~a~~~L~-~~~--~~VVVT~G~~Ga~~~~~~~~~~~pa~~v~vVDTtGAGDAF~Agf 360 (426)
T PLN02813 284 DILFANSDEARALCGLGSEESPESATRYLS-HFC--PLVSVTDGARGSYIGVKGEAVYIPPSPCVPVDTCGAGDAYAAGI 360 (426)
T ss_pred CEEEeCHHHHHHHhCCCCCCCHHHHHHHHH-cCC--CEEEEEeCCCCeEEEECCEEEEeCCCCCCcccCCChHHHHHHHH
Confidence 9999999999999986 45666666664 555 78999999999999999999999999999999999999999999
Q ss_pred HHHHHcCC-CHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhc
Q 011562 373 AFGFIHNM-PTVNTLTIANAVGAATAMGCGAGRNVATLERVIELMRAS 419 (483)
Q Consensus 373 l~gl~~g~-~l~~al~~A~aaAa~~v~~~G~~~~~p~~~ev~~~l~~~ 419 (483)
++++++|+ ++++|+++|+++|+.++++.|+...+|+.+++.+.++.+
T Consensus 361 l~~l~~G~~~l~~al~~A~a~Aa~~v~~~Ga~~~~~~~~e~~~~~~~~ 408 (426)
T PLN02813 361 LYGLLRGVSDLRGMGELAARVAATVVGQQGTRLRVEDAVELAESFALH 408 (426)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHcccCCCcCHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999988889999999888765
No 6
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=2.9e-42 Score=357.29 Aligned_cols=323 Identities=20% Similarity=0.182 Sum_probs=238.6
Q ss_pred ccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHH
Q 011562 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (483)
Q Consensus 82 ~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~ 161 (483)
+.|+|+|++.+|++...............+.+..+...++.....+||+++|+|++++|||.++.|+|.||+|.+|++++
T Consensus 126 ~~v~~~Ge~liDf~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~GGa~aNVAvaLARLG~~vafIG~VGdD~fG~~l~ 205 (496)
T PLN02543 126 PLVCCFGAVQKEFVPTVRVHDNQMHPDMYSQWKMLQWDPPEFARAPGGPPSNVAISHVRLGGRAAFMGKVGDDDFGEELV 205 (496)
T ss_pred CeEEEeChhhhhhcCCCcccccccccccccccccccccCCeeEeccCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHH
Confidence 45999999999998753211000000000111122222334556678889999999999999999999999999999999
Q ss_pred HHHHHcCCCccceeecCCCCccccCcccceeEEEEEC--CCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEE
Q 011562 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVD--PSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (483)
Q Consensus 162 ~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd--~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~i 239 (483)
+.|+++||+++++.+.++.. |+.+++.++ .+|++.+..+..- ....+. ..+.....+.+++++|+
T Consensus 206 ~~L~~~GVDts~v~~~~~~~--------Tgla~V~v~~~~~gr~~~~~~~~g----A~~~L~-~~di~~~~l~~a~ilh~ 272 (496)
T PLN02543 206 LMMNKERVQTRAVKFDENAK--------TACSRMKIKFRDGGKMVAETVKEA----AEDSLL-ASELNLAVLKEARMFHF 272 (496)
T ss_pred HHHHHcCCcccceEecCCCC--------CceEEEEEEeCCCCCEEEEecCCC----HHHhCC-hhhcCHhHhCCCceEEE
Confidence 99999999999998776543 888888874 4453322111110 111111 00111235788999999
Q ss_pred ecCCCC-CCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC------
Q 011562 240 NGYGFD-ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR------ 312 (483)
Q Consensus 240 sG~~~~-~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~------ 312 (483)
+++.+. +...+.+.++++.|++.|++|+||++.|+. +|....+.++.+..+++++|++++|++|++.|+|..
T Consensus 273 ~~~~l~~~~~~~a~~~al~~Ak~~G~~VsfDpN~R~~-LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~Ltg~~~~~~~~ 351 (496)
T PLN02543 273 NSEVLTSPSMQSTLFRAIELSKKFGGLIFFDLNLPLP-LWRSRDETRELIKKAWNEADIIEVSRQELEFLLDEDYYERKR 351 (496)
T ss_pred CChhhcCchHHHHHHHHHHHHHHCCCEEEEeCCCCcc-ccCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCcccccc
Confidence 987642 223478889999999999999999998875 455545667778899999999999999999999853
Q ss_pred -----------------------CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCc-----cccccCCCCc
Q 011562 313 -----------------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAF-----KVNVTDTVGC 364 (483)
Q Consensus 313 -----------------------~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~-----~v~vvDttGA 364 (483)
+. +.+..+++.|+ +.||||+|++|+++++++....++.. +..+||||||
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~g~--~~VVVT~G~~Ga~~~t~~~~g~v~~~~~~~v~~~~VDTTGA 428 (496)
T PLN02543 352 NYPPQYYAESFEQTKNWRDYYHYTP-EEIAPLWHDGL--KLLLVTDGTLRIHYYTPKFDGVVVGTEDVLITPFTCDRTGS 428 (496)
T ss_pred cccchhhhhhhhhhhcccccccCCH-HHHHHHHHCCC--CEEEEEcCCCcEEEEECCCcccccccccccCCCCCcCCCch
Confidence 22 33566777665 78999999999999986422222111 1124899999
Q ss_pred hHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhcCC
Q 011562 365 GDSFVAAVAFGFIH-------NMPTVNTLTIANAVGAATAMGCGAGRNVATLERVIELMRASNL 421 (483)
Q Consensus 365 GDaF~Ag~l~gl~~-------g~~l~~al~~A~aaAa~~v~~~G~~~~~p~~~ev~~~l~~~~~ 421 (483)
||+|+|||+++|+. |+++++|+++|+++||++|++.|+..++|++++|++++++.-+
T Consensus 429 GDAF~AGfL~~Ll~~~~~~~~g~~l~ealrfAnAaaAl~vt~~GA~~~lPt~~ev~~~~~~~~~ 492 (496)
T PLN02543 429 GDAVVAAIMRKLTTCPEMFEDQDVLERQLRFAVAAGIISQWTIGAVRGFPTESATQNLKEQVYV 492 (496)
T ss_pred HHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhhcc
Confidence 99999999999985 7899999999999999999999999999999999999998654
No 7
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=100.00 E-value=1.4e-41 Score=335.90 Aligned_cols=287 Identities=29% Similarity=0.431 Sum_probs=238.6
Q ss_pred cEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHH
Q 011562 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (483)
Q Consensus 83 ~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~ 162 (483)
+|+|+|++++|++..++++|..+...+. .....++||.+.|+|.+|++||.++.++|.+|+|.+|+++++
T Consensus 1 ~il~iG~~~~D~~~~~~~~~~~~~~~~~----------~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~ 70 (292)
T cd01174 1 KVVVVGSINVDLVTRVDRLPKPGETVLG----------SSFETGPGGKGANQAVAAARLGARVAMIGAVGDDAFGDELLE 70 (292)
T ss_pred CEEEEeeceeEEEEEecCCCCCCCcEEe----------ccceecCCCcHHHHHHHHHHcCCceEEEEEEcCCccHHHHHH
Confidence 5899999999999999988877654322 134566789999999999999999999999999999999999
Q ss_pred HHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecC
Q 011562 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (483)
Q Consensus 163 ~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~ 242 (483)
.|+++||+++++...++. +|+.++++++.+|++.+............+.+ +...+.+..++++++++
T Consensus 71 ~l~~~gi~~~~~~~~~~~--------~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~- 137 (292)
T cd01174 71 NLREEGIDVSYVEVVVGA--------PTGTAVITVDESGENRIVVVPGANGELTPADV----DAALELIAAADVLLLQL- 137 (292)
T ss_pred HHHHcCCCceEEEEcCCC--------CceeEEEEEcCCCceEEEEeCCCCCCCCHHHH----HHHHHhcccCCEEEEeC-
Confidence 999999999998665543 48888899998888877644332211111111 23345678999999985
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC-----CHHHH
Q 011562 243 GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NPITA 317 (483)
Q Consensus 243 ~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~-----~~~~~ 317 (483)
..+.+.+..+++.++++|.++++|++.... ..+.+++++|++++|++|++.+++.. +..++
T Consensus 138 ---~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-----------~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~ 203 (292)
T cd01174 138 ---EIPLETVLAALRAARRAGVTVILNPAPARP-----------LPAELLALVDILVPNETEAALLTGIEVTDEEDAEKA 203 (292)
T ss_pred ---CCCHHHHHHHHHHHHhcCCEEEEeCCCcCc-----------CcHHHHhhCCEEeeCHHHHHHHhCCCCCCHHHHHHH
Confidence 456778889999999999999999975422 12478899999999999999998864 24567
Q ss_pred HHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 011562 318 GQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATA 397 (483)
Q Consensus 318 ~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v 397 (483)
++.+.+.|+ +.||+|+|++|++++++++.+++|+++++++||+||||+|+|||++++++|+++++|+++|+++|+.++
T Consensus 204 ~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGD~F~ag~l~~l~~g~~~~~al~~a~~~Aa~~~ 281 (292)
T cd01174 204 ARLLLAKGV--KNVIVTLGAKGALLASGGEVEHVPAFKVKAVDTTGAGDTFIGALAAALARGLSLEEAIRFANAAAALSV 281 (292)
T ss_pred HHHHHHcCC--CEEEEEeCCCceEEEeCCceEEecCCCcccCCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 788888776 789999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCC
Q 011562 398 MGCGAGRNVAT 408 (483)
Q Consensus 398 ~~~G~~~~~p~ 408 (483)
++.|+..++|+
T Consensus 282 ~~~G~~~~~~~ 292 (292)
T cd01174 282 TRPGAQPSIPT 292 (292)
T ss_pred cCcCCCCCCCC
Confidence 99999877774
No 8
>PLN02967 kinase
Probab=100.00 E-value=8.7e-42 Score=356.64 Aligned_cols=318 Identities=19% Similarity=0.161 Sum_probs=239.5
Q ss_pred ccEEEECCceeEEEecCCCCC-CCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHH
Q 011562 82 IDVATLGNLCVDIVLNVPQLP-PPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (483)
Q Consensus 82 ~~VlviG~~~iD~~~~v~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i 160 (483)
..|+|+|.+.+|++......- ...... ...++.....+......+||.++|+|++|+|||.++.|+|.||+|.+|+++
T Consensus 197 ~~V~~iGe~l~D~~p~g~~~~~l~~~~~-~~~~~~~~s~~~~~~~~~GGa~aNVAvaLARLG~~v~fIg~VGdD~~G~~l 275 (581)
T PLN02967 197 PLVCCFGAAQHAFVPSGRPANRLLDYEI-HERMKDAFWAPEKFVRAPGGSAGGVAIALASLGGKVAFMGKLGDDDYGQAM 275 (581)
T ss_pred CeEEEECchhheecccCccchhhhhccc-cccccccccCccceeeecCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 469999999999975311100 000000 000011112334555667888999999999999999999999999999999
Q ss_pred HHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEe
Q 011562 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCN 240 (483)
Q Consensus 161 ~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~is 240 (483)
++.|+++||+++++...++. .|+.++++++++|++.+..+... ....+. ..+.....+.+++++|++
T Consensus 276 l~~L~~~GVDts~v~~~~~~--------~Tgla~V~vd~~Gerr~~~~~~g----Ad~~L~-~~di~~~~l~~A~i~hfg 342 (581)
T PLN02967 276 LYYLNVNKVQTRSVCIDGKR--------ATAVSTMKIAKRGRLKTTCVKPC----AEDSLS-KSEINIDVLKEAKMFYFN 342 (581)
T ss_pred HHHHHHcCCcccceEecCCC--------CCcEEEEEECCCCceEEEEecCC----hhhhCC-hhhcCHhHhcCCCEEEEe
Confidence 99999999999999876554 49999999999888665322111 111111 001012356889999999
Q ss_pred cCCC-CCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCC------
Q 011562 241 GYGF-DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRN------ 313 (483)
Q Consensus 241 G~~~-~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~------ 313 (483)
++.+ .+...+.+..+++.|++.|++|+||++++.. +|......++.+.++++++||+++|++|+..|+|..+
T Consensus 343 g~~ll~e~~~~all~alk~Ak~~Gv~VsFDpNlR~~-lw~~~e~~~e~i~elL~~aDILk~NeeEl~~LtG~~~~~e~~~ 421 (581)
T PLN02967 343 THSLLDPTMRSTTLRAIKISKKLGGVIFYDLNLPLP-LWSSSEETKSFIQEAWNLADIIEVTKQELEFLCGIEPTEEFDT 421 (581)
T ss_pred CchhcccchHHHHHHHHHHHHHCCCEEEEECCCCcc-cccchHHHHHHHHHHHHhCCEEEECHHHHHHHhCCCccccccc
Confidence 8753 3344578899999999999999999998875 3433345567788999999999999999999998542
Q ss_pred -----------HHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCe---eEEecCcccc--ccCCCCchHHHHHHHHHHHH
Q 011562 314 -----------PITAGQELLRKGLRTKWVVVKMGPRGSILVTKSS---ISCAPAFKVN--VTDTVGCGDSFVAAVAFGFI 377 (483)
Q Consensus 314 -----------~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~---~~~vpa~~v~--vvDttGAGDaF~Ag~l~gl~ 377 (483)
..+.++.++..|+ +.||||+|++|+++++++. ...+++++++ +||||||||+|+|||+++|+
T Consensus 422 ~~~~~~~~~~~~~e~a~~l~~~g~--k~VVVTlG~~Ga~~~~~~~~~~v~~~~a~~V~V~vVDTTGAGDAF~AGfL~~Ll 499 (581)
T PLN02967 422 KDNDKSKFVHYSPEVVAPLWHENL--KVLFVTNGTSKIHYYTKEHNGAVHGMEDAPITPFTSDMSASGDGIVAGLMRMLT 499 (581)
T ss_pred cccchhccccchHHHHHHHHhCCC--CEEEEEECccceEEEECCCceeEeeccCCCCCCCCCCCCchhHHHHHHHHHHHH
Confidence 1244566766665 7899999999999998754 3445666666 59999999999999999999
Q ss_pred cC-------CCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHH
Q 011562 378 HN-------MPTVNTLTIANAVGAATAMGCGAGRNVATLERVIELM 416 (483)
Q Consensus 378 ~g-------~~l~~al~~A~aaAa~~v~~~G~~~~~p~~~ev~~~l 416 (483)
+| +++++|+++|+++||++++..|+..++|++++|++-.
T Consensus 500 ~g~~~~~g~~~LeeaLrfAnAaAAL~vt~~GA~~glPt~~eV~~~~ 545 (581)
T PLN02967 500 VQPHLITDKGYLEKTIKYAIDCGVIDQWLLARTRGFPPKEDMEDEV 545 (581)
T ss_pred hccCcccccccHHHHHHHHHHHHHHHhccCCCccCCCCHHHHhhhc
Confidence 74 6799999999999999999999999999999997533
No 9
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=100.00 E-value=8e-42 Score=341.00 Aligned_cols=298 Identities=26% Similarity=0.357 Sum_probs=237.5
Q ss_pred ccEEEECCceeEEEecCCCCC------CCChhhhhH--HhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecC
Q 011562 82 IDVATLGNLCVDIVLNVPQLP------PPSRDARKA--YMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGN 153 (483)
Q Consensus 82 ~~VlviG~~~iD~~~~v~~~p------~~~~~~~~~--~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~ 153 (483)
.+|+|+|++++|+++.++++| .+++..... ........ .+....+||.+.|+|++|++||.++.++|.+|+
T Consensus 2 ~~v~~vG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~ 80 (312)
T cd01168 2 YDVLGLGNALVDILAQVDDAFLEKLGLKKGDMILADMEEQEELLAK-LPVKYIAGGSAANTIRGAAALGGSAAFIGRVGD 80 (312)
T ss_pred ceEEEECCCeEEEEEecCHHHHHHcCCCCCceeecCHHHHHHHHHh-cCccccCCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence 359999999999999999988 334322110 00000000 023556788899999999999999999999999
Q ss_pred ChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcC
Q 011562 154 EIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKH 233 (483)
Q Consensus 154 D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 233 (483)
|.+|+++++.|+++||+++.+... + .+|+.++++++++|++.++...........+. +. ...+++
T Consensus 81 D~~g~~i~~~l~~~GV~~~~~~~~-~--------~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~---~~---~~~l~~ 145 (312)
T cd01168 81 DKLGDFLLKDLRAAGVDTRYQVQP-D--------GPTGTCAVLVTPDAERTMCTYLGAANELSPDD---LD---WSLLAK 145 (312)
T ss_pred ChhHHHHHHHHHHCCCccccccCC-C--------CCceEEEEEEcCCCceeeecccchhhcCChhH---CC---HHHHcc
Confidence 999999999999999999988643 2 24899999999888888754433221111111 11 235788
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCC--
Q 011562 234 SKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL-- 311 (483)
Q Consensus 234 ~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~-- 311 (483)
++++|++|+.+. .+.+.+..+++.+++.|+++++|++... .....++.+.++++++|++++|++|++.+++.
T Consensus 146 ~~~v~~~~~~~~-~~~~~~~~~~~~a~~~g~~v~~d~~~~~-----~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~~ 219 (312)
T cd01168 146 AKYLYLEGYLLT-VPPEAILLAAEHAKENGVKIALNLSAPF-----IVQRFKEALLELLPYVDILFGNEEEAEALAEAET 219 (312)
T ss_pred CCEEEEEEEecC-CCHHHHHHHHHHHHHcCCEEEEeCCcHH-----HHHHHHHHHHHHHhhCCEEEeCHHHHHHHhCCCC
Confidence 999999987542 3448889999999999999999996310 01233456788999999999999999999985
Q ss_pred CCHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCcc-ccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHH
Q 011562 312 RNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFK-VNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIAN 390 (483)
Q Consensus 312 ~~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~-v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~ 390 (483)
.+..++++.+++.|+ +.||||+|++|++++++++.+++|+++ ++++|||||||+|+|||++++++|+++++|+++|+
T Consensus 220 ~~~~~~a~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~ag~l~~l~~g~~~~~a~~~a~ 297 (312)
T cd01168 220 TDDLEAALKLLALRC--RIVVITQGAKGAVVVEGGEVYPVPAIPVEKIVDTNGAGDAFAGGFLYGLVQGEPLEECIRLGS 297 (312)
T ss_pred CChHHHHHHHHhcCC--CEEEEecCCCCeEEEECCEEEeCCCCCCCCcccCCchHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567788899998876 789999999999999988889999998 89999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCC
Q 011562 391 AVGAATAMGCGAG 403 (483)
Q Consensus 391 aaAa~~v~~~G~~ 403 (483)
++|++++++.|+.
T Consensus 298 ~~Aa~~v~~~G~~ 310 (312)
T cd01168 298 YAAAEVIQQLGPR 310 (312)
T ss_pred HHHHHHHhccCCC
Confidence 9999999999974
No 10
>PTZ00247 adenosine kinase; Provisional
Probab=100.00 E-value=1.6e-41 Score=343.43 Aligned_cols=305 Identities=19% Similarity=0.242 Sum_probs=237.4
Q ss_pred CCCccEEEECCceeEEEecCCC------CCCCChhhhhHHh------hhhccCCCCCccccCCcHHHHHHHHHHcC---C
Q 011562 79 VKSIDVATLGNLCVDIVLNVPQ------LPPPSRDARKAYM------DQLSASPPDKQYWEAGGNCNVAIAAARLG---L 143 (483)
Q Consensus 79 ~~~~~VlviG~~~iD~~~~v~~------~p~~~~~~~~~~~------~~~~~~~~~~~~~~GGg~~NvA~~larLG---~ 143 (483)
|+.++|+|+|++++|+++.+++ .|..++....... +.... ......+||++.|+|+++++|| .
T Consensus 3 ~~~~~i~~iG~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~GG~~~N~A~~la~lg~~g~ 80 (345)
T PTZ00247 3 SAPKKLLGFGNPLLDISAHVSDEFLEKYGLELGSAILAEEKQLPIFEELESI--PNVSYVPGGSALNTARVAQWMLQAPK 80 (345)
T ss_pred CCCceEEEECCceEEEEEeeCHHHHHHcCCCCCceeechHHHHHHHHHHHhc--cCceecCCCHHHHHHHHHHHHhcCCC
Confidence 5678999999999999999985 4666655433211 00111 2345667888999999999885 5
Q ss_pred -ceEEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhh
Q 011562 144 -DCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNK 222 (483)
Q Consensus 144 -~v~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~ 222 (483)
+|.++|.||+|.+|+++++.|+++||+++.+. ..+ .+|+.+++++++ ++|+++...+.......+.+..
T Consensus 81 ~~v~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~-~~~--------~~Tg~~~i~v~~-~~r~~~~~~ga~~~l~~~~i~~ 150 (345)
T PTZ00247 81 GFVCYVGCVGDDRFAEILKEAAEKDGVEMLFEY-TTK--------APTGTCAVLVCG-KERSLVANLGAANHLSAEHMQS 150 (345)
T ss_pred CcEEEEEEeccchhHHHHHHHHHHcCCeeeccc-cCC--------CCcEEEEEEEcC-CCcccccCcchhhcCChHHcCc
Confidence 99999999999999999999999999998774 332 249999998875 6777655333322222222211
Q ss_pred ccHHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCH
Q 011562 223 LSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTS 302 (483)
Q Consensus 223 l~~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~ 302 (483)
..+.+.+++++++|++|+.+. .+.+.+.++++.++++|+++++|++... + .....+.+.++++++|++++|+
T Consensus 151 --~~~~~~l~~~~~v~~~g~~~~-~~~~~~~~~~~~a~~~g~~v~~d~~~~~---~--~~~~~~~~~~~l~~~Dil~~N~ 222 (345)
T PTZ00247 151 --HAVQEAIKTAQLYYLEGFFLT-VSPNNVLQVAKHARESGKLFCLNLSAPF---I--SQFFFERLLQVLPYVDILFGNE 222 (345)
T ss_pred --HHHHHHHhhCCEEEEEEEEec-ccHHHHHHHHHHHHHcCCEEEEECCcHH---H--HHHHHHHHHHHHhhCCEEEeCH
Confidence 112335788999999998543 4678899999999999999999985321 0 1122345788999999999999
Q ss_pred HHHHHhhC-----CCCHHHHHHHHHHc----CCCccEEEEEeCCCcEEEEECCeeEEecCccc---cccCCCCchHHHHH
Q 011562 303 DEAESLTG-----LRNPITAGQELLRK----GLRTKWVVVKMGPRGSILVTKSSISCAPAFKV---NVTDTVGCGDSFVA 370 (483)
Q Consensus 303 ~Ea~~l~g-----~~~~~~~~~~l~~~----g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v---~vvDttGAGDaF~A 370 (483)
+|++.|+| ..+..++++.+.+. +.+.+.||||+|++|++++++++.+++|++++ ++||||||||+|+|
T Consensus 223 ~Ea~~l~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~~~~vVDTtGAGDaF~a 302 (345)
T PTZ00247 223 EEAKTFAKAMKWDTEDLKEIAARIAMLPKYSGTRPRLVVFTQGPEPTLIATKDGVTSVPVPPLDQEKIVDTNGAGDAFVG 302 (345)
T ss_pred HHHHHHhhccCCCccCHHHHHHHHHhccccccCCCCEEEEecCCCceEEEECCEEEEEeccccCCCCccCCCChHHHHHH
Confidence 99999998 34677777777642 32347899999999999999998888998887 59999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcccCCC
Q 011562 371 AVAFGFIHNMPTVNTLTIANAVGAATAMGCGAG 403 (483)
Q Consensus 371 g~l~gl~~g~~l~~al~~A~aaAa~~v~~~G~~ 403 (483)
||+++|++|+++++|+++|+++|++++++.|+.
T Consensus 303 gfl~~l~~g~~~~~al~~a~~aAa~~v~~~Ga~ 335 (345)
T PTZ00247 303 GFLAQYANGKDIDRCVEAGHYSAQVIIQHNGCT 335 (345)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999975
No 11
>PRK09850 pseudouridine kinase; Provisional
Probab=100.00 E-value=5.4e-41 Score=335.13 Aligned_cols=299 Identities=20% Similarity=0.241 Sum_probs=236.2
Q ss_pred CCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHH
Q 011562 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (483)
Q Consensus 80 ~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~ 159 (483)
+++.|+|+|++++|+++.++..+..+... +......+||++.|+|.+++|||.++.++|.||+|.+|++
T Consensus 3 ~~~~i~~iG~~~vD~~~~~~~~~~~~~~~-----------~~~~~~~~GG~~~NvA~~l~~lG~~~~~ig~vG~D~~g~~ 71 (313)
T PRK09850 3 EKDYVVIIGSANIDVAGYSHESLNYADSN-----------PGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQS 71 (313)
T ss_pred CCCcEEEECcEEEeeeccCCCcCcCCCCC-----------ceEEEEeCCcHHHHHHHHHHHcCCCeEEEEEecCchhHHH
Confidence 35679999999999999865544332211 1234555688899999999999999999999999999999
Q ss_pred HHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccc-cCCCCChhhhhhhhccHHHHHhhcCCcEEE
Q 011562 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSR-ADFSKEPAFSWMNKLSAEVKTAIKHSKVLF 238 (483)
Q Consensus 160 i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~ 238 (483)
+++.|++.||+++++...++. +|+.++++++++|++.+... ........ ........+.++++++++
T Consensus 72 i~~~l~~~gVd~~~~~~~~~~--------~T~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~ 139 (313)
T PRK09850 72 LLTQTNQSGVYVDKCLIVPGE--------NTSSYLSLLDNTGEMLVAINDMNISNAIT----AEYLAQHREFIQRAKVIV 139 (313)
T ss_pred HHHHHHHcCCCchheeecCCC--------CceEEEEEecCCCCEEEEecCchHhhhCC----HHHHHHHHHHHhcCCEEE
Confidence 999999999999988665543 38999999998888765332 11111111 111122234578899999
Q ss_pred EecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCC-----CC
Q 011562 239 CNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL-----RN 313 (483)
Q Consensus 239 isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~-----~~ 313 (483)
+++ ..+.+.+..+++.+ +++++++|++.. |. ...+.++++++|++++|++|+..++|. .+
T Consensus 140 ~~~----~~~~~~~~~~~~~~--~g~~v~~D~~~~----~~-----~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~ 204 (313)
T PRK09850 140 ADC----NISEEALAWILDNA--ANVPVFVDPVSA----WK-----CVKVRDRLNQIHTLKPNRLEAETLSGIALSGRED 204 (313)
T ss_pred EeC----CCCHHHHHHHHHhc--cCCCEEEEcCCH----HH-----HHHHHhhhccceEEccCHHHHHHHhCCCCCCHHH
Confidence 985 35566677776644 589999999742 10 124567889999999999999999984 34
Q ss_pred HHHHHHHHHHcCCCccEEEEEeCCCcEEEEECC-eeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011562 314 PITAGQELLRKGLRTKWVVVKMGPRGSILVTKS-SISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAV 392 (483)
Q Consensus 314 ~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~-~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aa 392 (483)
..++++.+.+.|. +.+|||+|++|++++.++ +..++|++++++||||||||+|+|||+++|.+|+++++|+++|+++
T Consensus 205 ~~~~~~~l~~~g~--~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfi~~l~~g~~~~eal~~a~a~ 282 (313)
T PRK09850 205 VAKVAAWFHQHGL--NRLVLSMGGDGVYYSDISGESGWSAPIKTNVINVTGAGDAMMAGLASCWVDGMPFAESVRFAQGC 282 (313)
T ss_pred HHHHHHHHHHcCC--CEEEEEeCCceEEEEcCCCCeEecCCCCcccccCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5677788877776 789999999999999854 4567888889999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCCCCHHHHHHHHHh
Q 011562 393 GAATAMGCGAGRNVATLERVIELMRA 418 (483)
Q Consensus 393 Aa~~v~~~G~~~~~p~~~ev~~~l~~ 418 (483)
|+++++..+.....|+++++++++..
T Consensus 283 aa~~~~~~~~~~~~~~~~~~~~~~~~ 308 (313)
T PRK09850 283 SSMALSCEYTNNPDLSIANVISLVEN 308 (313)
T ss_pred HHHHhcCCCCCCcccCHHHHHHHHHH
Confidence 99999999998899999999998874
No 12
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=100.00 E-value=8.8e-41 Score=332.24 Aligned_cols=294 Identities=25% Similarity=0.309 Sum_probs=237.6
Q ss_pred CccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHH
Q 011562 81 SIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (483)
Q Consensus 81 ~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i 160 (483)
+.+|+++|++++|++. .++. .....+||++.|+|.++++||.++.++|.+|+|.+|+++
T Consensus 2 ~~~il~iG~~~iD~~~------~~~~---------------~~~~~~GG~~~N~a~~l~~LG~~~~~v~~vG~D~~g~~i 60 (304)
T PRK09434 2 MNKVWVLGDAVVDLIP------EGEN---------------RYLKCPGGAPANVAVGIARLGGESGFIGRVGDDPFGRFM 60 (304)
T ss_pred CCcEEEecchheeeec------CCCC---------------ceeeCCCChHHHHHHHHHHcCCCceEEEEecCchHHHHH
Confidence 3489999999999982 1111 123346888999999999999999999999999999999
Q ss_pred HHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEe
Q 011562 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCN 240 (483)
Q Consensus 161 ~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~is 240 (483)
++.|+++||+++++...++.+ |+.+++.++++|++.+...... ..+. .+.....+.+.+++++|++
T Consensus 61 ~~~l~~~gI~~~~~~~~~~~~--------t~~~~i~~~~~g~r~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~ 126 (304)
T PRK09434 61 QQTLQDEGVDTTYLRLDPAHR--------TSTVVVDLDDQGERSFTFMVRP----SADL--FLQPQDLPPFRQGEWLHLC 126 (304)
T ss_pred HHHHHHcCCCCcceEEcCCCC--------ceEEEEEECCCCCEeEEEecCC----chhh--hCCHHHhhhhcCCCEEEEc
Confidence 999999999999987766543 8888888888787775321110 1100 0111111235779999999
Q ss_pred cCCCCC-CCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHHHHHH
Q 011562 241 GYGFDE-LSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQ 319 (483)
Q Consensus 241 G~~~~~-~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~ 319 (483)
++.... ...+...++++.++++|.++++|++.+.. .|......++.+.++++++|++++|++|+..++|..+..++++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~-~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l~g~~~~~~~~~ 205 (304)
T PRK09434 127 SIALSAEPSRSTTFEAMRRIKAAGGFVSFDPNLRED-LWQDEAELRECLRQALALADVVKLSEEELCFLSGTSQLEDAIY 205 (304)
T ss_pred cccccCchHHHHHHHHHHHHHHcCCEEEECCCCChh-hccCHHHHHHHHHHHHHhcceeeCCHHHHHHHhCCCCHHHHHH
Confidence 875432 22356678899999999999999987654 3433345567788899999999999999999999888888899
Q ss_pred HHHH-cCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCC------CHHHHHHHHHHH
Q 011562 320 ELLR-KGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNM------PTVNTLTIANAV 392 (483)
Q Consensus 320 ~l~~-~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~------~l~~al~~A~aa 392 (483)
.+.+ .|. +.||||+|++|++++++++.+++|+++++++|||||||+|+|||++++++|+ ++++|+++|+++
T Consensus 206 ~l~~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGD~f~ag~~~~l~~g~~~~~~~~~~~a~~~a~~~ 283 (304)
T PRK09434 206 ALADRYPI--ALLLVTLGAEGVLVHTRGQVQHFPAPSVDPVDTTGAGDAFVAGLLAGLSQAGLWTDEAELAEIIAQAQAC 283 (304)
T ss_pred HHHhhcCC--cEEEEEecCCceEEEeCCceeEeCCCCCCCCcCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHH
Confidence 8877 454 7899999999999999888899999999999999999999999999999997 899999999999
Q ss_pred HHHHhcccCCCCCCCCHHHH
Q 011562 393 GAATAMGCGAGRNVATLERV 412 (483)
Q Consensus 393 Aa~~v~~~G~~~~~p~~~ev 412 (483)
|++++++.|+...+|+++++
T Consensus 284 Aa~~v~~~g~~~~~~~~~~~ 303 (304)
T PRK09434 284 GALATTAKGAMTALPNRQEL 303 (304)
T ss_pred HHHHHcccCCcCCCCChHHc
Confidence 99999999988788988775
No 13
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=100.00 E-value=1.3e-40 Score=330.79 Aligned_cols=295 Identities=23% Similarity=0.296 Sum_probs=239.3
Q ss_pred EECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHHHHH
Q 011562 86 TLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQ 165 (483)
Q Consensus 86 viG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~~L~ 165 (483)
|.=++++|+++.++++| +++..+. .....++||.+.|+|+++++||.+|.++|.+|+| +|+.+++.|+
T Consensus 4 ~~~~~~~D~~~~~~~~~-~g~~~~~----------~~~~~~~GG~~~NvA~~la~lG~~v~~is~vG~D-~g~~~~~~L~ 71 (304)
T TIGR03828 4 VTLNPAIDLTIELDGLT-LGEVNRV----------ESTRIDAGGKGINVSRVLKNLGVDVVALGFLGGF-TGDFIEALLR 71 (304)
T ss_pred EEcchHHeEEEEccccc-cCceeec----------ccccccCCccHHHHHHHHHHcCCCeEEEEEecCc-hhHHHHHHHH
Confidence 45589999999999998 6654432 2445667888999999999999999999999999 6999999999
Q ss_pred HcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecCCCC
Q 011562 166 DEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFD 245 (483)
Q Consensus 166 ~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~~~~ 245 (483)
+.||+++++...+ .|+.++++++.+|++.++...+.. .....+..+.+.+.+.+.+++++|++|+.+.
T Consensus 72 ~~gId~~~~~~~~----------~t~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~ 139 (304)
T TIGR03828 72 EEGIKTDFVRVPG----------ETRINVKIKEPSGTETKLNGPGPE--ISEEELEALLEKLRAQLAEGDWLVLSGSLPP 139 (304)
T ss_pred HCCCcceEEECCC----------CCeeeEEEEeCCCCEEEEECCCCC--CCHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 9999999886542 256677888877877665443321 1111222222333446789999999998776
Q ss_pred CCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC-----CHHHHHHH
Q 011562 246 ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NPITAGQE 320 (483)
Q Consensus 246 ~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~-----~~~~~~~~ 320 (483)
..+.+.+..+++.+++++.++++|++.. .....+...+|++++|++|++.+++.. +..++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~v~~D~~~~------------~~~~~~~~~~~i~~~n~~E~~~l~g~~~~~~~~~~~~~~~ 207 (304)
T TIGR03828 140 GVPPDFYAELIALAREKGAKVILDTSGE------------ALRDGLKAKPFLIKPNDEELEELFGRELKTLEEIIEAARE 207 (304)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEECChH------------HHHHHHhcCCcEECcCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 6778889999999999999999999632 111223346789999999999999863 34566777
Q ss_pred HHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccc
Q 011562 321 LLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAMGC 400 (483)
Q Consensus 321 l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~~~ 400 (483)
+++.|. +.||||+|++|++++++++.+++++++++++|||||||+|.|||+++|.+|+++++|+++|+++|+.++++.
T Consensus 208 l~~~g~--~~vvvT~G~~G~~~~~~~~~~~~~~~~~~vvDttGAGDaF~a~~l~~l~~g~~~~~a~~~a~~~Aa~~~~~~ 285 (304)
T TIGR03828 208 LLDLGA--ENVLISLGADGALLVTKEGALFAQPPKGEVVSTVGAGDSMVAGFLAGLESGLSLEEALRLAVAAGSAAAFSE 285 (304)
T ss_pred HHHcCC--CEEEEccCCCCcEEEcCCceEEEeCCCccccCCcChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc
Confidence 888776 789999999999999988888899998999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHhcC
Q 011562 401 GAGRNVATLERVIELMRASN 420 (483)
Q Consensus 401 G~~~~~p~~~ev~~~l~~~~ 420 (483)
|+ .+|+++|+++++.++.
T Consensus 286 G~--~~p~~~~~~~~~~~~~ 303 (304)
T TIGR03828 286 GT--GLPDPEDIEELLPQVT 303 (304)
T ss_pred CC--CCCCHHHHHHHHhccc
Confidence 96 4899999999988753
No 14
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-41 Score=324.56 Aligned_cols=313 Identities=30% Similarity=0.411 Sum_probs=257.6
Q ss_pred CCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHH
Q 011562 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (483)
Q Consensus 80 ~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~ 159 (483)
.++.|+|+|++++|++..++.+|.++++.. ++...+.+||+++|+|++++|||.++.|||.||+|.+|+.
T Consensus 8 ~~~~vv~fGs~~~D~V~~~~~~p~~ge~~~----------~~~f~~~~GG~~aN~AvaaarLG~~~afiGkvGdD~fG~~ 77 (330)
T KOG2855|consen 8 EPPLVVVFGSMLIDFVPSTRRLPNAGETWE----------PPGFKTAPGGKGANQAVAAARLGGRVAFIGKVGDDEFGDD 77 (330)
T ss_pred CCceEEEeccceeeeeeccccCCCcccccc----------CCcceecCCCcchhhhhHHHhcCcceeeeecccchhhHHH
Confidence 577899999999999999999999887432 3567778899999999999999999999999999999999
Q ss_pred HHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEE
Q 011562 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (483)
Q Consensus 160 i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~i 239 (483)
+.+.|++.+|+++++..+.+.+ |+.+.+.+..+|++.+....+.+ .+......+...+.++.++++|+
T Consensus 78 l~~~L~~~~V~~~~v~~~~~~~--------T~~a~i~v~~dG~~~~~~v~gan----~~~~~~~se~~~~~i~~ak~~~~ 145 (330)
T KOG2855|consen 78 LLDILKQNGVDTSGVKFDENAR--------TACATITVSKDGENRIIFVRGAN----ADMLPEDSELNLEVIKEAKVFHC 145 (330)
T ss_pred HHHHHhhCCcccccceecCCCc--------eEEEEEEEccCCceEEEEEecCc----hhcCcccccccHHHHhhccEEEE
Confidence 9999999999999999888765 88999999988887764433222 11112223445667899999999
Q ss_pred ecCCCCCCCH-HHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHHHHH
Q 011562 240 NGYGFDELSP-ALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAG 318 (483)
Q Consensus 240 sG~~~~~~~~-~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~ 318 (483)
.+..+.+.+. ......++.++..+.-+++||+.+... |+.....+..+..++..+|++..+++|+..++|..+. +..
T Consensus 146 q~ei~~~~~~~s~~~~~~~~~~~~g~~i~~~pn~~l~l-~~~~~~ne~e~~~i~~~adv~~~s~~e~~fl~~~~~~-~~~ 223 (330)
T KOG2855|consen 146 QSEILIEEPMRSLHIAAVKVAKNAGPAIFYDPNLRLPL-WDSLEENESEIASIWNMADVIKVSSQELAFLTGIEDD-KIL 223 (330)
T ss_pred eeecCCcchhHHHHHhhhhhhhcccccccCCCCccccc-cccccccHHHHHHHhhhhhcccccHHHHHHhccCccc-hHH
Confidence 9655433332 222233567778888888899988874 4554444555889999999999999999999987433 333
Q ss_pred HHHHHcCCCccEEEEEeCCCcEEEEECCeeE-EecCccccccCCCCchHHHHHHHHHHHHcC--CC---HHHHHHHHHHH
Q 011562 319 QELLRKGLRTKWVVVKMGPRGSILVTKSSIS-CAPAFKVNVTDTVGCGDSFVAAVAFGFIHN--MP---TVNTLTIANAV 392 (483)
Q Consensus 319 ~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~-~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g--~~---l~~al~~A~aa 392 (483)
.|...+. |+||||+|++||.|++++..- ++|+++|++||||||||+|+|||+.+|.+| .+ +++++++|+++
T Consensus 224 -~L~~~~~--k~viVTlG~kG~~y~tk~~~~~~v~~~~V~~VDtTGAGDsFvgal~~~L~~~~~~~~~~L~~~l~~A~a~ 300 (330)
T KOG2855|consen 224 -KLWHMKL--KLVIVTLGEKGCRYYTKDFKGSHVPAFKVKAVDTTGAGDSFVGALAVQLVRGSLLPELSLEEALRFANAC 300 (330)
T ss_pred -HHhccCC--CEEEEEeCCCceEEEecCCCCCCCCCcccccccCCCchHHHHHHHHHHHhhccccchHHHHHHHHHHHHh
Confidence 7777665 899999999999999988655 999999999999999999999999999999 66 99999999999
Q ss_pred HHHHhcccCCCCCCCCHHHHHHHHHhc
Q 011562 393 GAATAMGCGAGRNVATLERVIELMRAS 419 (483)
Q Consensus 393 Aa~~v~~~G~~~~~p~~~ev~~~l~~~ 419 (483)
|+.++++.|+.+.+|+++++...+...
T Consensus 301 ~ai~v~~~Ga~~s~p~~~~~~~~~~~~ 327 (330)
T KOG2855|consen 301 GAITVQRKGAIPSMPTEKEVQSLLKSS 327 (330)
T ss_pred hhHHhhccCCCccCccHHHHHHHhhhc
Confidence 999999999999999999999887653
No 15
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=2.8e-40 Score=338.60 Aligned_cols=312 Identities=17% Similarity=0.228 Sum_probs=239.9
Q ss_pred CCCCCccEEEECCceeEEEecCCC-------CCCCChh-----hhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcC-C
Q 011562 77 SGVKSIDVATLGNLCVDIVLNVPQ-------LPPPSRD-----ARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLG-L 143 (483)
Q Consensus 77 ~~~~~~~VlviG~~~iD~~~~v~~-------~p~~~~~-----~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG-~ 143 (483)
++.+..+|+++||+.+|+...|+. +++++.. ......+.+...+.......||++.|+|+++++|| .
T Consensus 29 ~~~~~~~v~g~GNaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~~~~~~~~GGsaaNtA~~lArLGG~ 108 (434)
T PRK15074 29 NETSRTYIVGIDQTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNNLITHEFAGGTIGNTLHNYSVLADD 108 (434)
T ss_pred cCCCCCcEEEeCCceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhccccccccCCCHHHHHHHHHHHcCCC
Confidence 345778999999999999999754 3322221 22233334432221134457888999999999996 9
Q ss_pred ceEEEEEecCC-hhhHHHHHHHH--HcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhh
Q 011562 144 DCVTIGHVGNE-IYGRFLLDVLQ--DEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWM 220 (483)
Q Consensus 144 ~v~lig~vG~D-~~g~~i~~~L~--~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~ 220 (483)
++.++|.||+| .+|+++++.|+ +.||++.++...+. +|+.|+++++++|+|+++...+.......+++
T Consensus 109 ~~~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~~---------~TG~~~VlV~~dGeRt~~t~~GA~~~Lt~edl 179 (434)
T PRK15074 109 RSVLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVDG---------PIGRCFTLISEDGERTFAISPGHMNQLRPESI 179 (434)
T ss_pred CeEEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcCC---------CCEEEEEEECCCCCEEEEEecChhhcCChhHC
Confidence 99999999999 79999999997 58999998854321 49999999999999998765443322222221
Q ss_pred hhccHHHHHhhcCCcEEEEecCCCC----CCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHH-HhhhcCC
Q 011562 221 NKLSAEVKTAIKHSKVLFCNGYGFD----ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRAL-SYFLSTS 295 (483)
Q Consensus 221 ~~l~~~~~~~l~~~~~v~isG~~~~----~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l-~~ll~~~ 295 (483)
. ...+++++++|++||.+. +...+.+.++++.|++.|++|++|++.+.. ++ ..++.+ ..+++++
T Consensus 180 ---d---~~~i~~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~-v~----~~~~~~~e~l~~~v 248 (434)
T PRK15074 180 ---P---EDVIAGASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFV-IE----DNPQWWQEFLKEHV 248 (434)
T ss_pred ---C---HhHhccCCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhh-cc----ccHHHHHHHHHhcC
Confidence 1 235789999999999764 234678889999999999999999986531 11 112222 3456799
Q ss_pred CEEEcCHHHHHHhhCCCCHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECC-------ee--------------------
Q 011562 296 DVLLLTSDEAESLTGLRNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKS-------SI-------------------- 348 (483)
Q Consensus 296 dil~~N~~Ea~~l~g~~~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~-------~~-------------------- 348 (483)
|++++|++|+..++|..++.++++.+.+. . +.||||+|++|++++..+ ..
T Consensus 249 DILf~NeeEa~~LtG~~d~eea~~~L~~~-~--~~VVVTlG~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (434)
T PRK15074 249 SILAMNEDEAEALTGESDPLLASDKALDW-V--DLVLCTAGPIGLYMAGYTEDEAKRETQHPLLPGAIAEFNRYEFSRAM 325 (434)
T ss_pred CEEEcCHHHHHHHhCCCCHHHHHHHHHcC-C--CEEEEEECCCCEEEEecccccccCceeeeccccccccccchhcccch
Confidence 99999999999999988888888888754 4 789999999999997522 12
Q ss_pred ------------EEecCc---cccccCCCCchHHHHHHHHHHHHcCC--------------------CHHHHHHHHHHHH
Q 011562 349 ------------SCAPAF---KVNVTDTVGCGDSFVAAVAFGFIHNM--------------------PTVNTLTIANAVG 393 (483)
Q Consensus 349 ------------~~vpa~---~v~vvDttGAGDaF~Ag~l~gl~~g~--------------------~l~~al~~A~aaA 393 (483)
+++|++ ++++||||||||+|+|||+|+|.+|+ ++++|+++|+++|
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~vDttGAGD~f~~gfl~~l~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a 405 (434)
T PRK15074 326 RKKDCQNPLRVYSHIAPYMGGPEKIMNTNGAGDGALSALLHDITANSYHRSNVPNSSKHKRTYLTYSSLAQVCKYANRVS 405 (434)
T ss_pred hccccccccccccccCcccCCCCcceeCCCcHHHHHHHHHHHHHCCCcccccccccccccccccccCCHHHHHHHHHHHH
Confidence 278888 78999999999999999999999998 8999999999999
Q ss_pred HHHhcccCC--CCCCCCHHH
Q 011562 394 AATAMGCGA--GRNVATLER 411 (483)
Q Consensus 394 a~~v~~~G~--~~~~p~~~e 411 (483)
+.++++.|+ ..++|++++
T Consensus 406 ~~vi~~~G~~~~~~~p~~~~ 425 (434)
T PRK15074 406 YEVLNQHSPRLSRGLPERED 425 (434)
T ss_pred HHHHhhcCCCCCCCCCCccc
Confidence 999999998 456777654
No 16
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-40 Score=330.20 Aligned_cols=303 Identities=31% Similarity=0.461 Sum_probs=249.6
Q ss_pred cEEEECCceeEEEec-CCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHH
Q 011562 83 DVATLGNLCVDIVLN-VPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (483)
Q Consensus 83 ~VlviG~~~iD~~~~-v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~ 161 (483)
+|+++|++++|++.. .+.+|..+..... ...+...||.+.|+|++++|||.++.++|.||+|.+|++++
T Consensus 1 ~v~~iG~~~vD~~~~~~~~~~~~~~~~~~----------~~~~~~~GG~~~N~A~~~a~lG~~~~~~~~vG~D~~g~~~~ 70 (311)
T COG0524 1 DVVVIGEANVDLIAQVVDRLPEPGETVLG----------DFFKVAGGGKGANVAVALARLGAKVALIGAVGDDDFGEFLL 70 (311)
T ss_pred CEEEECchhhheehhhccCCCCCcccccc----------cceeecCCchHHHHHHHHHHcCCceEEEEEecCcHHHHHHH
Confidence 489999999999996 6777777654321 01244455559999999999999999999999999999999
Q ss_pred HHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCC-CCChhhhhhhhccHHHH-HhhcCCcEEEE
Q 011562 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADF-SKEPAFSWMNKLSAEVK-TAIKHSKVLFC 239 (483)
Q Consensus 162 ~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~~-~~l~~~~~v~i 239 (483)
+.|++.||+++++....+. +|+.+.+.++++|++.+...... ..... ...+. ..+...+++|+
T Consensus 71 ~~l~~~GVd~~~~~~~~~~--------~tg~~~i~~~~~g~r~~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~~ 135 (311)
T COG0524 71 EELRKEGVDTSHVVTDEGA--------TTGLALILVDEDGERTFVFYRGAAALLLT-------PEDLDEDELAGADVLHI 135 (311)
T ss_pred HHHHHcCCccceEEEcCCC--------cceEEEEEEcCCCceeEEEECCcccccCC-------hHHcChHHHhhcCeeeE
Confidence 9999999999999876653 48999999999999988665432 11111 11122 45678999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCC-CCHHHHH
Q 011562 240 NGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL-RNPITAG 318 (483)
Q Consensus 240 sG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~-~~~~~~~ 318 (483)
+++.+...+ +.+..+++.+++.|.++++|++++...+. .+.+.++++++|++++|++|++.++|. .+..+..
T Consensus 136 ~~~~l~~~~-~~~~~~~~~a~~~g~~v~~d~~~~~~~~~------~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~~~~~~ 208 (311)
T COG0524 136 SGIQLEIPP-EALLAALELAKAAGVTVSFDLNPRPALWD------RELLEELLALADILFPNEEEAELLTGLEEDAEAAA 208 (311)
T ss_pred EEeecCCCh-HHHHHHHHHHHHcCCeEEEecCCCccccc------hhhHHHHHhhCCEEeCCHHHHHHHhCCCccHHHHH
Confidence 988754333 89999999999999999999998875321 567889999999999999999999995 6666666
Q ss_pred HHHHHcCCCccEEEEEeCCCcEEEEECCe---eEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 011562 319 QELLRKGLRTKWVVVKMGPRGSILVTKSS---ISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAA 395 (483)
Q Consensus 319 ~~l~~~g~~~~~vVvT~G~~G~~~~~~~~---~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~ 395 (483)
..++..++ +.+|+|+|++|+++++++. ....+++++++||||||||+|+|||+++|++|+++++|+++|+++|++
T Consensus 209 ~~~~~~~~--~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfl~~~~~g~~~~~a~~~a~a~aa~ 286 (311)
T COG0524 209 ALLLAKGV--KTVVVTLGAEGAVVFTGGGEVTVPVPAAFKVKVVDTTGAGDAFAAGFLAGLLEGKSLEEALRFANAAAAL 286 (311)
T ss_pred HHHhhcCC--CEEEEEeCCCcEEEEeCCCceeeccCCCCccccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHhhh
Confidence 66666665 8899999999999999854 334447788999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCCCCHHHHHHHHHhc
Q 011562 396 TAMGCGAGRNVATLERVIELMRAS 419 (483)
Q Consensus 396 ~v~~~G~~~~~p~~~ev~~~l~~~ 419 (483)
++++.|+...+|+.+++..++++.
T Consensus 287 ~~~~~g~~~~~p~~~~~~~~~~~~ 310 (311)
T COG0524 287 AVTRPGARPSLPTREEVEAFLEEL 310 (311)
T ss_pred hhccCCCCCCCCCHHHHHHHHhcc
Confidence 999999988999999999988753
No 17
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2.1e-40 Score=327.14 Aligned_cols=284 Identities=26% Similarity=0.441 Sum_probs=226.2
Q ss_pred cEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHH
Q 011562 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (483)
Q Consensus 83 ~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~ 162 (483)
+|+|+|++++|++..++++|..+...+. ......+|| +.|+|++|++||.++.++|.+|+|.+|+++++
T Consensus 1 ~i~~iG~~~~D~i~~~~~~~~~~~~~~~----------~~~~~~~GG-~~Nva~~l~~lG~~~~~~~~vG~D~~g~~i~~ 69 (289)
T cd01944 1 KVLVIGAAVVDIVLDVDKLPASGGDIEA----------KSKSYVIGG-GFNVMVAASRLGIPTVNAGPLGNGNWADQIRQ 69 (289)
T ss_pred CeEEEcceeEEEEeecccCCCCCCcccc----------ceeeeccCc-HHHHHHHHHHcCCCeEEEEEecCChHHHHHHH
Confidence 5899999999999999998877654332 134566789 99999999999999999999999999999999
Q ss_pred HHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecC
Q 011562 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (483)
Q Consensus 163 ~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~ 242 (483)
.|++.||+++.+... + ..|+.++++++++|++.++...+.......++++. ..+.+++++|++|+
T Consensus 70 ~l~~~gi~~~~~~~~-~--------~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 134 (289)
T cd01944 70 AMRDEGIEILLPPRG-G--------DDGGCLVALVEPDGERSFISISGAEQDWSTEWFAT------LTVAPYDYVYLSGY 134 (289)
T ss_pred HHHHcCCcccccccc-C--------CCCeEEEEEEcCCCceEEEEeCCccCCCCHHHhcc------ccCCCCCEEEEeCc
Confidence 999999999987653 2 23777778888888887755443322212122111 13578999999998
Q ss_pred CCCCC--CHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCH--HHHH
Q 011562 243 GFDEL--SPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNP--ITAG 318 (483)
Q Consensus 243 ~~~~~--~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~--~~~~ 318 (483)
.+... ..+.+.++++.++ .+.++++|++++...+. .+.++++++++|++++|++|++.++|..+. ..++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~D~~~~~~~~~------~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~~~~~~~ 207 (289)
T cd01944 135 TLASENASKVILLEWLEALP-AGTTLVFDPGPRISDIP------DTILQALMAKRPIWSCNREEAAIFAERGDPAAEASA 207 (289)
T ss_pred cccCcchhHHHHHHHHHhcc-CCCEEEEcCcccccccC------HHHHHHHHhcCCEEccCHHHHHHHhCCCCcchHHHH
Confidence 65322 3566667776644 57999999987654221 356788999999999999999999986543 2345
Q ss_pred HHHHHcCCCccEEEEEeCCCcEEEEE-CCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 011562 319 QELLRKGLRTKWVVVKMGPRGSILVT-KSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATA 397 (483)
Q Consensus 319 ~~l~~~g~~~~~vVvT~G~~G~~~~~-~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v 397 (483)
+++.+.+. +.||||+|++|++++. ++..+++|+++++++|||||||+|+|||++++.+|+++++|+++|+++|+.++
T Consensus 208 ~~~~~~~~--~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~~~~g~~~~~a~~~a~a~aa~~~ 285 (289)
T cd01944 208 LRIYAKTA--APVVVRLGSNGAWIRLPDGNTHIIPGFKVKAVDTIGAGDTHAGGMLAGLAKGMSLADAVLLANAAAAIVV 285 (289)
T ss_pred HHHHhccC--CeEEEEECCCcEEEEecCCCeEEecCCCCCCccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhh
Confidence 67777776 7799999999999998 45577889999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 011562 398 MGCG 401 (483)
Q Consensus 398 ~~~G 401 (483)
++.|
T Consensus 286 ~~~G 289 (289)
T cd01944 286 TRSG 289 (289)
T ss_pred ccCC
Confidence 9876
No 18
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=100.00 E-value=1.9e-40 Score=331.42 Aligned_cols=303 Identities=20% Similarity=0.276 Sum_probs=231.7
Q ss_pred CCCCccEEEECCceeEEEec--CCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCCh
Q 011562 78 GVKSIDVATLGNLCVDIVLN--VPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEI 155 (483)
Q Consensus 78 ~~~~~~VlviG~~~iD~~~~--v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~ 155 (483)
++++++|+++|+.++|+++. +++++...... ... ......+.|| ++|+|.++++||.+|.++|.+|+|.
T Consensus 4 ~~~~~~il~iG~~~iD~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~GG-a~NvA~~l~~lg~~v~~i~~vG~D~ 74 (315)
T TIGR02198 4 SFKGAKVLVVGDVMLDRYWYGKVSRISPEAPVP------VVK--VEREEDRLGG-AANVARNIASLGARVFLVGVVGDDE 74 (315)
T ss_pred hhCCCcEEEECceeEeeeeeecccccCCCCCCc------eEE--EEEEEecCcH-HHHHHHHHHhcCCceEEEEEEecch
Confidence 45788999999999999987 54442211100 000 0122334455 7999999999999999999999999
Q ss_pred hhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCc
Q 011562 156 YGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSK 235 (483)
Q Consensus 156 ~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 235 (483)
+|+++++.|++.||++..+...++.+ |+.+++++++++.......... ......+.....+.....++++|
T Consensus 75 ~g~~i~~~l~~~gI~~~~~~~~~~~~--------t~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~ 145 (315)
T TIGR02198 75 AGKRLEALLAEEGIDTSGLIRDKDRP--------TTTKTRVLARNQQLLRVDFEER-DPINAELEARLLAAIREQLASAD 145 (315)
T ss_pred hHHHHHHHHHHCCCCcceEEECCCCC--------cceEEEEEcCCeEEEEecCCCC-CCCCHHHHHHHHHHHHhhhhhCC
Confidence 99999999999999999887665543 7777778776432211111110 00111111222233445688999
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCC----
Q 011562 236 VLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL---- 311 (483)
Q Consensus 236 ~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~---- 311 (483)
+|+++++....++.+.+..+++.++++|++|++||+++. ...++++|++++|++|++.+++.
T Consensus 146 ~v~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~--------------~~~~~~~d~l~~n~~E~~~l~~~~~~~ 211 (315)
T TIGR02198 146 AVVLSDYAKGVLTPRVVQEVIAAARKHGKPVLVDPKGKD--------------FSRYRGATLITPNRKEAEAAVGACDTE 211 (315)
T ss_pred EEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCcc--------------hhhcCCCcEECCCHHHHHHHhCCCCCH
Confidence 999998876677888899999999999999999997531 13577899999999999999984
Q ss_pred CCHHHHHHHHHH-cCCCccEEEEEeCCCcEEEEEC-CeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHH
Q 011562 312 RNPITAGQELLR-KGLRTKWVVVKMGPRGSILVTK-SSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIA 389 (483)
Q Consensus 312 ~~~~~~~~~l~~-~g~~~~~vVvT~G~~G~~~~~~-~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A 389 (483)
.+..++++.+++ .|+ +.||||+|++|++++++ +..+++|+++++++||+||||+|.|||++++++|+++++|+++|
T Consensus 212 ~~~~~~~~~l~~~~g~--~~vivT~G~~G~~~~~~~~~~~~~~~~~~~vvdt~GAGDaf~ag~~~~l~~g~~~~~al~~A 289 (315)
T TIGR02198 212 AELVQAAEKLLEELDL--EALLVTRSEKGMTLFTREGEPIHIPAQAREVYDVTGAGDTVIATLALALAAGASLEEACRLA 289 (315)
T ss_pred HHHHHHHHHHHHHcCC--CEEEEEcCCCCeEEEecCCCeEEecCCCCCCCCCcCccHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 234566667664 455 88999999999999984 56888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCCHHHHHHHH
Q 011562 390 NAVGAATAMGCGAGRNVATLERVIELM 416 (483)
Q Consensus 390 ~aaAa~~v~~~G~~~~~p~~~ev~~~l 416 (483)
+++|++++++.|+. .++++++++.|
T Consensus 290 ~~~aa~~~~~~G~~--~~~~~~~~~~~ 314 (315)
T TIGR02198 290 NAAAGVVVGKLGTA--TVSPAELANAL 314 (315)
T ss_pred HHHhhhhhccCCCC--CCCHHHHHHHh
Confidence 99999999999975 47999998755
No 19
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=2e-39 Score=329.18 Aligned_cols=314 Identities=21% Similarity=0.275 Sum_probs=236.3
Q ss_pred CCccEEEEC-CceeEEEecCCC-------CCCCC-----hhhhhHHhhhhccC-------CCCCccccCCcHHHHHHHHH
Q 011562 80 KSIDVATLG-NLCVDIVLNVPQ-------LPPPS-----RDARKAYMDQLSAS-------PPDKQYWEAGGNCNVAIAAA 139 (483)
Q Consensus 80 ~~~~VlviG-~~~iD~~~~v~~-------~p~~~-----~~~~~~~~~~~~~~-------~~~~~~~~GGg~~NvA~~la 139 (483)
.+++|+.+| |+.+|+...++. +++++ ++........+... +...+...||++.|++++++
T Consensus 18 ~~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~la 97 (367)
T PLN02379 18 RPPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIRGLS 97 (367)
T ss_pred CCCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHHHHH
Confidence 578899999 999999999754 22222 22222233333321 11355667888999999999
Q ss_pred H-cCCceEEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhh
Q 011562 140 R-LGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFS 218 (483)
Q Consensus 140 r-LG~~v~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~ 218 (483)
+ ||.++.++|.||+|.+|+++++.|++.||+++.+...+ .+|+.|+++++++|+|++....+.......+
T Consensus 98 ~~LG~~~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~~~---------~~Tg~~~v~v~~dgert~~~~lg~~~~l~~~ 168 (367)
T PLN02379 98 AGFGVSTGIIGACGDDEQGKLFVSNMGFSGVDLSRLRAKK---------GPTAQCVCLVDALGNRTMRPCLSSAVKLQAD 168 (367)
T ss_pred HhcCCCEEEEEEeCCChhHHHHHHHHHHcCCCccCcccCC---------CCCceEEEEECCCCCccccCCccccccCChh
Confidence 6 99999999999999999999999999999988774422 2488999999999988875432221111111
Q ss_pred hhhhccHHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc--CCC
Q 011562 219 WMNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS--TSD 296 (483)
Q Consensus 219 ~~~~l~~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~--~~d 296 (483)
.+. .+.+++++++|++ |.. .+.+.+.++++.|+++|++|++|++.... ....++.+.++++ ++|
T Consensus 169 ---~~~---~~~~~~~~~v~v~-~~~--~~~~~~~~~~~~A~~~g~~v~lD~s~~~~-----v~~~r~~l~~ll~~~~vD 234 (367)
T PLN02379 169 ---ELT---KEDFKGSKWLVLR-YGF--YNLEVIEAAIRLAKQEGLSVSLDLASFEM-----VRNFRSPLLQLLESGKID 234 (367)
T ss_pred ---HCC---HHHHhcCCEEEEE-ccc--CCHHHHHHHHHHHHHcCCEEEEeccchhh-----hhhhhHHHHHHhhcCCcc
Confidence 111 2356889999999 532 45788999999999999999999964210 1123455666764 899
Q ss_pred EEEcCHHHHHHhhCC---CCHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccc-cccCCCCchHHHHHHH
Q 011562 297 VLLLTSDEAESLTGL---RNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKV-NVTDTVGCGDSFVAAV 372 (483)
Q Consensus 297 il~~N~~Ea~~l~g~---~~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v-~vvDttGAGDaF~Ag~ 372 (483)
++++|++|+..+++. .+..++.+ +++.+. +.+|||+|++|++++.+++.+++|++++ ++||||||||+|+|||
T Consensus 235 ilf~Ne~Ea~~l~~~~~~~~~~~~~~-~l~~~~--~~vvvT~G~~Ga~~~~~~~~~~v~a~~~~~vVDTtGAGDaFaagf 311 (367)
T PLN02379 235 LCFANEDEARELLRGEQESDPEAALE-FLAKYC--NWAVVTLGSKGCIARHGKEVVRVPAIGETNAVDATGAGDLFASGF 311 (367)
T ss_pred EEEcCHHHHHHHhcCCCCCCHHHHHH-HHHhcC--CEEEEEECCCCeEEEECCEEEEecCCCCCCcccCCChhHHHHHHH
Confidence 999999999999863 34555544 455555 7899999999999999998999999874 7999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhc
Q 011562 373 AFGFIHNMPTVNTLTIANAVGAATAMGCGAGRNVATLERVIELMRAS 419 (483)
Q Consensus 373 l~gl~~g~~l~~al~~A~aaAa~~v~~~G~~~~~p~~~ev~~~l~~~ 419 (483)
+|++.+|+++++|+++|+++|+.+|++.|+.......+++.+.++..
T Consensus 312 l~gl~~G~~l~~a~~~g~~aAa~vi~~~G~~~~~~~~~~~~~~~~~~ 358 (367)
T PLN02379 312 LYGLIKGLSLEECCKVGACSGGSVVRALGGEVTPENWQWMYKQMQLK 358 (367)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHc
Confidence 99999999999999999999999999999764333444444444433
No 20
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=100.00 E-value=4.5e-40 Score=323.85 Aligned_cols=283 Identities=24% Similarity=0.340 Sum_probs=225.5
Q ss_pred cEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHH
Q 011562 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (483)
Q Consensus 83 ~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~ 162 (483)
+|+|+|++++|+++.++.+|..++..+. ......+||.+.|+|.+|++||.++.++|.+|+|.+|+++++
T Consensus 1 ~i~~iG~~~iD~~~~~~~~p~~~~~~~~----------~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~ 70 (284)
T cd01945 1 RVLGVGLAVLDLIYLVASFPGGDGKIVA----------TDYAVIGGGNAANAAVAVARLGGQARLIGVVGDDAIGRLILA 70 (284)
T ss_pred CEEEECcceeEEEEEeccCCCCCCeEEE----------eEEEEecCCHHHHHHHHHHHcCCCeEEEEEecCchHHHHHHH
Confidence 5899999999999999998887654321 134556788899999999999999999999999999999999
Q ss_pred HHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecC
Q 011562 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (483)
Q Consensus 163 ~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~ 242 (483)
.|++.||+++++...++.+ |+.+++ ++.++++.............. +.+.. ..+++++++|++++
T Consensus 71 ~l~~~gI~~~~~~~~~~~~--------t~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~v~i~~~ 135 (284)
T cd01945 71 ELAAEGVDTSFIVVAPGAR--------SPISSI-TDITGDRATISITAIDTQAAP---DSLPD---AILGGADAVLVDGR 135 (284)
T ss_pred HHHHcCCCccceeecCCCC--------CccEEE-EccCCCceEEEecCCCCCCCc---ccCCH---HHhCcCCEEEEcCC
Confidence 9999999999998765533 555554 344454443322221111111 11211 23689999999965
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHHHHHHHHH
Q 011562 243 GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQELL 322 (483)
Q Consensus 243 ~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~~l~ 322 (483)
. ++...++++.++++|.++++|..+... .+ +.++++++|++++|++|++.+++..+. ++++.+.
T Consensus 136 ~-----~~~~~~~~~~~~~~g~~v~~~~~~~~~---------~~-~~~~~~~~dil~~n~~e~~~l~~~~~~-~~~~~l~ 199 (284)
T cd01945 136 Q-----PEAALHLAQEARARGIPIPLDLDGGGL---------RV-LEELLPLADHAICSENFLRPNTGSADD-EALELLA 199 (284)
T ss_pred C-----HHHHHHHHHHHHHcCCCeeEeccCCcc---------cc-hHHHhccCCEEEeChhHHhhhcCCCHH-HHHHHHH
Confidence 3 467788999999999987777654321 11 567889999999999999999987654 6777777
Q ss_pred HcCCCccEEEEEeCCCcEEEEE-CCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccC
Q 011562 323 RKGLRTKWVVVKMGPRGSILVT-KSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAMGCG 401 (483)
Q Consensus 323 ~~g~~~~~vVvT~G~~G~~~~~-~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~~~G 401 (483)
+.+. +.||||+|++|+++++ +++.+++|+++++++||+||||+|+|||+++|++|+++++|+++|+++|+.++++.|
T Consensus 200 ~~~~--~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~l~~g~~~~~al~~a~~~Aa~~~~~~G 277 (284)
T cd01945 200 SLGI--PFVAVTLGEAGCLWLERDGELFHVPAFPVEVVDTTGAGDVFHGAFAHALAEGMPLREALRFASAAAALKCRGLG 277 (284)
T ss_pred hcCC--cEEEEEECCCCeEEEcCCCCEEecCCCccccccCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccC
Confidence 7766 7899999999999998 677889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 011562 402 AGRNVAT 408 (483)
Q Consensus 402 ~~~~~p~ 408 (483)
+..++|+
T Consensus 278 ~~~~~~~ 284 (284)
T cd01945 278 GRAGLPT 284 (284)
T ss_pred CcccCCC
Confidence 8777764
No 21
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=100.00 E-value=6.3e-40 Score=324.50 Aligned_cols=286 Identities=30% Similarity=0.428 Sum_probs=232.9
Q ss_pred cEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHH
Q 011562 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (483)
Q Consensus 83 ~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~ 162 (483)
||+|+|++++|++...+.. . ......+||.+.|+|.++++||.+|.++|.+|+|.+|+++++
T Consensus 1 ~ilviG~~~~D~~~~~~~~--~----------------~~~~~~~GG~~~n~a~~l~~lg~~v~~i~~vG~D~~g~~i~~ 62 (295)
T cd01167 1 KVVCFGEALIDFIPEGSGA--P----------------ETFTKAPGGAPANVAVALARLGGKAAFIGKVGDDEFGDFLLE 62 (295)
T ss_pred CEEEEcceeEEEecCCCCC--C----------------ccccccCCCcHHHHHHHHHhcCCCeEEEEeecCcHHHHHHHH
Confidence 5999999999999875543 0 123445688899999999999999999999999999999999
Q ss_pred HHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecC
Q 011562 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (483)
Q Consensus 163 ~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~ 242 (483)
.|++.||++.++.+.++. +|+.++++++++|++.+....... ..+.... +.....++++++++++++
T Consensus 63 ~l~~~gi~~~~~~~~~~~--------~T~~~~~~~~~~g~r~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~v~~~~~ 129 (295)
T cd01167 63 TLKEAGVDTRGIQFDPAA--------PTTLAFVTLDADGERSFEFYRGPA----ADLLLDT-ELNPDLLSEADILHFGSI 129 (295)
T ss_pred HHHHcCCCchheeecCCC--------CceEEEEEECCCCCEeEEeecCCc----HhhhcCc-cCChhHhccCCEEEEech
Confidence 999999999988755443 488888999888887765432211 1111000 012345688999999876
Q ss_pred CCC-CCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHHHHHHHH
Q 011562 243 GFD-ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQEL 321 (483)
Q Consensus 243 ~~~-~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~~l 321 (483)
... ....+.+.++++.+++.|.++++|++.+.. +|.......+.++++++++|++++|++|+..+++.....+.++.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~g~~v~~d~~~~~~-~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~~~~~~~~~l 208 (295)
T cd01167 130 ALASEPSRSALLELLEAAKKAGVLISFDPNLRPP-LWRDEEEARERIAELLELADIVKLSDEELELLFGEEDPEEIAALL 208 (295)
T ss_pred hhccchHHHHHHHHHHHHHHcCCEEEEcCCCChh-hcCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCCHHHHHHHH
Confidence 332 223467888999999999999999986543 233333446678899999999999999999999988777888888
Q ss_pred HHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHH
Q 011562 322 LRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNM-------PTVNTLTIANAVGA 394 (483)
Q Consensus 322 ~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~-------~l~~al~~A~aaAa 394 (483)
++.|+ +.+|||+|++|++++++++.+++|+++++++|||||||+|+|||+++|++|+ ++++|+++|+++|+
T Consensus 209 ~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~a~~~~vvDttGAGD~f~a~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa 286 (295)
T cd01167 209 LLFGL--KLVLVTRGADGALLYTKGGVGEVPGIPVEVVDTTGAGDAFVAGLLAQLLSRGLLALDEDELAEALRFANAVGA 286 (295)
T ss_pred hhcCC--CEEEEecCCcceEEEECCcceeeCCCCcceeeCCCccHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHhhH
Confidence 88776 7899999999999999988899999999999999999999999999999999 99999999999999
Q ss_pred HHhcccCC
Q 011562 395 ATAMGCGA 402 (483)
Q Consensus 395 ~~v~~~G~ 402 (483)
.+|++.|+
T Consensus 287 ~~~~~~G~ 294 (295)
T cd01167 287 LTCTKAGA 294 (295)
T ss_pred HHhcccCC
Confidence 99999985
No 22
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=100.00 E-value=1.2e-39 Score=322.23 Aligned_cols=287 Identities=28% Similarity=0.379 Sum_probs=226.9
Q ss_pred cEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHH
Q 011562 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (483)
Q Consensus 83 ~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~ 162 (483)
||+|+|++++|++...+... .. .......+||++.|+|++|++||.++.++|.+|+|.+|+++.+
T Consensus 1 ~i~~iG~~~iD~~~~~~~~~-----~~----------~~~~~~~~GG~~~N~a~~la~lg~~~~~i~~vG~D~~g~~i~~ 65 (294)
T cd01166 1 DVVTIGEVMVDLSPPGGGRL-----EQ----------ADSFRKFFGGAEANVAVGLARLGHRVALVTAVGDDPFGRFILA 65 (294)
T ss_pred CeEEechhheeeecCCCCcc-----ch----------hhccccccCChHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 58999999999987644211 10 1234556789999999999999999999999999999999999
Q ss_pred HHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHH-HHhhcCCcEEEEec
Q 011562 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEV-KTAIKHSKVLFCNG 241 (483)
Q Consensus 163 ~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~l~~~~~v~isG 241 (483)
.|++.||+++++...++. +|+.+++.++.+|++.+....+.. ....+. .+.+ ...++++++||++|
T Consensus 66 ~l~~~gi~~~~~~~~~~~--------~t~~~~~~~~~~g~r~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~v~~~~ 132 (294)
T cd01166 66 ELRREGVDTSHVRVDPGR--------PTGLYFLEIGAGGERRVLYYRAGS---AASRLT--PEDLDEAALAGADHLHLSG 132 (294)
T ss_pred HHHHcCCCCceEEEeCCC--------cceEEEEEecCCCCceEEEeCCCC---hhHhCC--hhhCCHHHHhCCCEEEEcC
Confidence 999999999999765554 388888998877777654332111 011110 0111 34578899999999
Q ss_pred CCCCCCCH--HHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCC---HHH
Q 011562 242 YGFDELSP--ALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRN---PIT 316 (483)
Q Consensus 242 ~~~~~~~~--~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~---~~~ 316 (483)
+.+...+. +.+.++++.+++.++++++||+.+... | ......+.+..+++++|++++|++|++.+++... ..+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~-~-~~~~~~~~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~ 210 (294)
T cd01166 133 ITLALSESAREALLEALEAAKARGVTVSFDLNYRPKL-W-SAEEAREALEELLPYVDIVLPSEEEAEALLGDEDPTDAAE 210 (294)
T ss_pred cchhhCHHHHHHHHHHHHHHHHcCCEEEECCCCcchh-c-ChHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCchhHHH
Confidence 87644443 788899999999999999999865432 1 1223455677899999999999999999998753 333
Q ss_pred HHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 011562 317 AGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAAT 396 (483)
Q Consensus 317 ~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~ 396 (483)
.++.+ +.|. +.||||+|++|++++++++.+++|+++++++||+||||+|+|||+++|++|+++++|+++|+++|+.+
T Consensus 211 ~~~~l-~~g~--~~viit~G~~G~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~~a~~~aa~~ 287 (294)
T cd01166 211 RALAL-ALGV--KAVVVKLGAEGALVYTGGGRVFVPAYPVEVVDTTGAGDAFAAGFLAGLLEGWDLEEALRFANAAAALV 287 (294)
T ss_pred HHHhh-cCCc--cEEEEEEcCCceEEEECCceEEeCCCCcccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44444 4554 78999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred hcccCC
Q 011562 397 AMGCGA 402 (483)
Q Consensus 397 v~~~G~ 402 (483)
+++.|+
T Consensus 288 i~~~G~ 293 (294)
T cd01166 288 VTRPGD 293 (294)
T ss_pred HhcCCC
Confidence 999984
No 23
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=6.1e-40 Score=321.99 Aligned_cols=274 Identities=27% Similarity=0.382 Sum_probs=221.4
Q ss_pred cEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHH
Q 011562 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (483)
Q Consensus 83 ~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~ 162 (483)
||+|+|++++|+++.++++|..++..+. .....++||++.|+|.++++||.++.++|.+|+|.+|+++++
T Consensus 1 ~v~~iG~~~~D~~~~v~~~p~~~~~~~~----------~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~ 70 (279)
T cd01942 1 DVAVVGHLNYDIILKVESFPGPFESVLV----------KDLRREFGGSAGNTAVALAKLGLSPGLVAAVGEDFHGRLYLE 70 (279)
T ss_pred CEEEEecceeeeEeecccCCCCCceEec----------ceeeecCCcHHHHHHHHHHHcCCCceEEEEecCCcchHHHHH
Confidence 6999999999999999999987643321 245667789999999999999999999999999999999999
Q ss_pred HHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecC
Q 011562 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (483)
Q Consensus 163 ~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~ 242 (483)
.|++.||+++++...++. +|+.+++++++++++.+............ . + ....+.+++++|++++
T Consensus 71 ~l~~~gi~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~-~~~~~~~~~~~~~~~~ 135 (279)
T cd01942 71 ELREEGVDTSHVRVVDED--------STGVAFILTDGDDNQIAYFYPGAMDELEP---N---D-EADPDGLADIVHLSSG 135 (279)
T ss_pred HHHHcCCCccceEEcCCC--------CcceEEEEEcCCCCEEEEecCCccccccc---C---C-chhhhcccCEEEeCCc
Confidence 999999999999654443 38888889988888776532221111110 0 1 2345688999999865
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHH---HHhhCCCCHHHHHH
Q 011562 243 GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEA---ESLTGLRNPITAGQ 319 (483)
Q Consensus 243 ~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea---~~l~g~~~~~~~~~ 319 (483)
. .+.++++.+++.|+++++|++++...++ .+.+..+++++|++++|++|+ ..+++..+...
T Consensus 136 ~-------~~~~~~~~~~~~g~~v~~D~~~~~~~~~------~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~--- 199 (279)
T cd01942 136 P-------GLIELARELAAGGITVSFDPGQELPRLS------GEELEEILERADILFVNDYEAELLKERTGLSEAEL--- 199 (279)
T ss_pred h-------HHHHHHHHHHHcCCeEEEcchhhhhhcc------HHHHHHHHhhCCEEecCHHHHHHHHhhcCCChHHH---
Confidence 2 4667788888889999999986543221 245678899999999999999 55666543321
Q ss_pred HHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCc-cccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Q 011562 320 ELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAF-KVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAM 398 (483)
Q Consensus 320 ~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~-~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~ 398 (483)
..+. +.||+|+|++|++++++++.+++|++ +++++|||||||+|+|||+++|++|+++++|+++|+++|+++++
T Consensus 200 ---~~~~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~g~~l~~al~~a~~~Aa~~~~ 274 (279)
T cd01942 200 ---ASGV--RVVVVTLGPKGAIVFEDGEEVEVPAVPAVKVVDTTGAGDAFRAGFLYGLLRGYDLEESLRLGNLAASLKVE 274 (279)
T ss_pred ---hcCC--CEEEEEECCCceEEEECCceEEccCcCcCCCcCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc
Confidence 1444 78999999999999998889999997 88999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 011562 399 GCGA 402 (483)
Q Consensus 399 ~~G~ 402 (483)
+.|+
T Consensus 275 ~~G~ 278 (279)
T cd01942 275 RRGA 278 (279)
T ss_pred ccCC
Confidence 9985
No 24
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=100.00 E-value=1.4e-39 Score=324.30 Aligned_cols=300 Identities=20% Similarity=0.240 Sum_probs=236.1
Q ss_pred cEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHH
Q 011562 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (483)
Q Consensus 83 ~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~ 162 (483)
-+.+..|+++|+++.+++++.++.... ......+||++.|+|+++++||.++.++|.+|+ .+|+++++
T Consensus 2 ~~~~t~np~~D~~~~~~~~~~~~~~~~-----------~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vGd-~~G~~i~~ 69 (309)
T PRK13508 2 ILTVTLNPSIDISYPLDELKLDTVNRV-----------VDVSKTAGGKGLNVTRVLSEFGENVLATGLIGG-ELGQFIAE 69 (309)
T ss_pred EEEEecChHHeEEEEeCCeeeCCeEEe-----------cceeecCCchHHHHHHHHHHcCCCeEEEEEecC-hhHHHHHH
Confidence 356779999999999999987764211 134566788899999999999999999999996 58999999
Q ss_pred HHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecC
Q 011562 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (483)
Q Consensus 163 ~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~ 242 (483)
.|++ ||+++++.... +|+.++++++ +|++.++...+.. ...+....+...+...+.++|++|++|+
T Consensus 70 ~l~~-gI~~~~~~~~~----------~t~~~~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~ 135 (309)
T PRK13508 70 HLDD-QIKHAFYKIKG----------ETRNCIAILH-EGQQTEILEKGPE--ISVQEADGFLHHFKQLLESVEVVAISGS 135 (309)
T ss_pred HHHc-CCCceEEECCC----------CCeeeEEEEe-CCCEEEEECCCCC--CCHHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 9999 99998765422 2566667766 5666654433221 1111111222334456789999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC---CH---HH
Q 011562 243 GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR---NP---IT 316 (483)
Q Consensus 243 ~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~---~~---~~ 316 (483)
.+...+.+.+..+++.+++.|+++++|++.. . .+.+...+.++|++++|++|+..++|.+ +. .+
T Consensus 136 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~---------~-~~~~~~~~~~~dii~~n~~E~~~l~g~~~~~~~~~~~~ 205 (309)
T PRK13508 136 LPAGLPVDYYAQLIELANQAGKPVVLDCSGA---------A-LQAVLESPYKPTVIKPNIEELSQLLGKEVSEDLDELKE 205 (309)
T ss_pred CCCCcCHHHHHHHHHHHHHCCCEEEEECCcH---------H-HHHHHhccCCceEEccCHHHHHHHhCCCCCCCHHHHHH
Confidence 7666667788899999999999999999632 1 1223334578999999999999999863 32 33
Q ss_pred HHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 011562 317 AGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAAT 396 (483)
Q Consensus 317 ~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~ 396 (483)
.+++++..|+ +.||||+|++|++++.+++.+++++++++++|||||||+|+|||+++|++|+++++|+++|+++|+++
T Consensus 206 ~~~~~~~~g~--~~vvvT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Agfi~~l~~g~~~~~al~~a~a~aa~~ 283 (309)
T PRK13508 206 VLQQPLFEGI--EWIIVSLGADGAFAKHNDTFYKVDIPKIEVVNPVGSGDSTVAGIASGLLHQEDDADLLKKANVLGMLN 283 (309)
T ss_pred HHHHHHHcCC--CEEEEecCCCceEEEeCCceEEEeCCCccccCCcChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4445555665 78999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCHHHHHHHHHhcCCC
Q 011562 397 AMGCGAGRNVATLERVIELMRASNLN 422 (483)
Q Consensus 397 v~~~G~~~~~p~~~ev~~~l~~~~~~ 422 (483)
+++.+.+ ..++.++++++++++++
T Consensus 284 ~~~~~~~--~~~~~~~~~~~~~i~~~ 307 (309)
T PRK13508 284 AQEKQTG--HVNMANYDELYNQIEVK 307 (309)
T ss_pred hcCcCcC--CCCHHHHHHHHhceEEE
Confidence 9998854 78899999999988765
No 25
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=100.00 E-value=2.4e-39 Score=320.16 Aligned_cols=288 Identities=29% Similarity=0.430 Sum_probs=238.0
Q ss_pred CCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHHHHHHc
Q 011562 88 GNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDE 167 (483)
Q Consensus 88 G~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~~L~~~ 167 (483)
|++++|+++.++++|.+++..+. .....++||++.|+|++|++||.++.++|.+|+|.+|+++++.|++.
T Consensus 1 G~~~~D~~~~~~~~p~~~~~~~~----------~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~ 70 (293)
T TIGR02152 1 GSINMDLVLRTDRLPKPGETVHG----------HSFQIGPGGKGANQAVAAARLGAEVSMIGKVGDDAFGDELLENLKSN 70 (293)
T ss_pred CCceEeEEEEeCCCCCCCCcEec----------CCceecCCCcHHHHHHHHHHCCCCEEEEEEecCCccHHHHHHHHHHc
Confidence 78999999999999888765432 13456778999999999999999999999999999999999999999
Q ss_pred CCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecCCCCCC
Q 011562 168 GIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDEL 247 (483)
Q Consensus 168 gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~~~~~~ 247 (483)
||+++++...++. +|+.+++++++++++.++...+.......+.+ +.+.+.+..++++++++ +.
T Consensus 71 gi~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~----~~ 134 (293)
T TIGR02152 71 GIDTEYVGTVKDT--------PTGTAFITVDDTGENRIVVVAGANAELTPEDI----DAAEALIAESDIVLLQL----EI 134 (293)
T ss_pred CCCeeEEEEcCCC--------CCceEEEEEcCCCCEEEEEECCcCCcCCHHHH----HHHHhhhccCCEEEEec----CC
Confidence 9999999765543 38888899988888776543322211121111 22334578899999883 55
Q ss_pred CHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC-----CHHHHHHHHH
Q 011562 248 SPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NPITAGQELL 322 (483)
Q Consensus 248 ~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~-----~~~~~~~~l~ 322 (483)
+.+.+..+++.++++++++++|++..... ....+++++|++++|++|+..+++.. +..+.++.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~v~~D~~~~~~~----------~~~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~ 204 (293)
T TIGR02152 135 PLETVLEAAKIAKKHGVKVILNPAPAIKD----------LDDELLSLVDIITPNETEAEILTGIEVTDEEDAEKAAEKLL 204 (293)
T ss_pred CHHHHHHHHHHHHHcCCEEEEECCcCccc----------chHHHHhcCCEEccCHHHHHHHhCCCCCCcchHHHHHHHHH
Confidence 67888899999999999999999753211 12467899999999999999998864 5667788888
Q ss_pred HcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccCC
Q 011562 323 RKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAMGCGA 402 (483)
Q Consensus 323 ~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~~~G~ 402 (483)
+.|+ +.+|||+|++|+++++++..+++|+++++++||+||||+|+|||++++.+|+++++|+++|+++|+.++++.|+
T Consensus 205 ~~g~--~~vvvt~G~~g~~~~~~~~~~~~~~~~~~~vdt~GAGDaf~Ag~l~~l~~g~~~~~al~~a~~~Aa~~~~~~G~ 282 (293)
T TIGR02152 205 EKGV--KNVIITLGSKGALLVSKDESKLIPAFKVKAVDTTAAGDTFNGAFAVALAEGKSLEDAIRFANAAAAISVTRKGA 282 (293)
T ss_pred HcCC--CeEEEEeCCCceEEEeCCceeEccCCCCceeCCCCcHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcccCc
Confidence 8776 88999999999999999888899999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCHHHHH
Q 011562 403 GRNVATLERVI 413 (483)
Q Consensus 403 ~~~~p~~~ev~ 413 (483)
...+|++++++
T Consensus 283 ~~~~~~~~~~~ 293 (293)
T TIGR02152 283 QSSIPYLEEVE 293 (293)
T ss_pred ccCCCChHHcC
Confidence 77778888763
No 26
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=100.00 E-value=2.8e-39 Score=322.63 Aligned_cols=300 Identities=20% Similarity=0.228 Sum_probs=238.5
Q ss_pred EE-EECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHH
Q 011562 84 VA-TLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (483)
Q Consensus 84 Vl-viG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~ 162 (483)
|+ |.=|+++|+++.++++|. ++..+. .....++||.+.|+|.++++||.++.++|.+|+|.+|++ .+
T Consensus 5 ~~~~~~~p~~D~~~~~~~~~~-~~~~~~----------~~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~~~~-~~ 72 (312)
T PRK09513 5 VATITLNPAYDLVGFCPEIER-GEVNLV----------KTTGLHAAGKGINVAKVLKDLGIDVTVGGFLGKDNQDGF-QQ 72 (312)
T ss_pred EEEEecChHHeEEEEcCceec-CCeeee----------cceeecCCchHHHHHHHHHHcCCCeEEEEEecCccHHHH-HH
Confidence 44 556999999999999984 443321 245667788899999999999999999999999999987 58
Q ss_pred HHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecC
Q 011562 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (483)
Q Consensus 163 ~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~ 242 (483)
.|+++||++..+... + +|+.+++++++++++......... ....+...+.......++++|++|++|+
T Consensus 73 ~l~~~gv~~~~~~~~-~---------~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~d~v~~~g~ 140 (312)
T PRK09513 73 LFSELGIANRFQVVQ-G---------RTRINVKLTEKDGEVTDFNFSGFE--VTPADWERFVTDSLSWLGQFDMVAVSGS 140 (312)
T ss_pred HHHHcCCCccEEECC-C---------CCEEEEEEEeCCCcEEEEeCCCCC--CCHHHHHHHHHHHHhhcCCCCEEEEECC
Confidence 899999998766332 2 367777888877776644332221 1111122222223456789999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC-----CHHHH
Q 011562 243 GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NPITA 317 (483)
Q Consensus 243 ~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~-----~~~~~ 317 (483)
.+.....+.+.++++.+++.|.++++|++.. .....+....|++++|++|+..++|.. +..++
T Consensus 141 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~------------~~~~~~~~~~~~l~~n~~E~~~l~g~~~~~~~~~~~~ 208 (312)
T PRK09513 141 LPRGVSPEAFTDWMTRLRSQCPCIIFDSSRE------------ALVAGLKAAPWLVKPNRRELEIWAGRKLPELKDVIEA 208 (312)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCEEEEECChH------------HHHHHhccCCeEEcCCHHHHHHHhCCCCCCHHHHHHH
Confidence 8766677888999999999999999999631 112234457889999999999999863 34456
Q ss_pred HHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 011562 318 GQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATA 397 (483)
Q Consensus 318 ~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v 397 (483)
++.+.+.|+ +.||||+|++|++++.+++.++.++++++++||+||||+|+|||++++++|+++++|+++|+++|++++
T Consensus 209 ~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~g~~~~~a~~~A~a~Aa~~~ 286 (312)
T PRK09513 209 AHALREQGI--AHVVISLGAEGALWVNASGEWIAKPPACDVVSTVGAGDSMVGGLIYGLLMRESSEHTLRLATAVSALAV 286 (312)
T ss_pred HHHHHHcCC--CEEEEEeCCCCcEEEeCCceEEecCCCccccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 777888776 789999999999999888788888888999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCHHHHHHHHHhcCCCc
Q 011562 398 MGCGAGRNVATLERVIELMRASNLNE 423 (483)
Q Consensus 398 ~~~G~~~~~p~~~ev~~~l~~~~~~~ 423 (483)
++.| .++|+++|+++++.++++++
T Consensus 287 ~~~~--~~~~~~~e~~~~l~~~~~~~ 310 (312)
T PRK09513 287 SQSN--VGITDRPQLAAMMARVDLTP 310 (312)
T ss_pred hCCC--CCCCCHHHHHHHHhceEEEe
Confidence 9987 46899999999998876643
No 27
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=100.00 E-value=1.3e-39 Score=323.72 Aligned_cols=287 Identities=23% Similarity=0.318 Sum_probs=220.5
Q ss_pred cEEEECCceeEEEecC--CCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHH
Q 011562 83 DVATLGNLCVDIVLNV--PQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (483)
Q Consensus 83 ~VlviG~~~iD~~~~v--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i 160 (483)
+|+|+|+.++|+++.+ +++|....... . . ........|| ++|+|.+|+|||.++.++|.+|+|.+|+++
T Consensus 1 ~vl~iG~~~~D~~~~~~~~~~~~~~~~~~------~-~-~~~~~~~~GG-~~NvA~~la~LG~~~~~i~~vG~D~~g~~i 71 (304)
T cd01172 1 KVLVVGDVILDEYLYGDVERISPEAPVPV------V-K-VEREEIRLGG-AANVANNLASLGAKVTLLGVVGDDEAGDLL 71 (304)
T ss_pred CEEEEcceeEEeeEeeccccccCCCCcce------E-E-eeeEEecCcH-HHHHHHHHHHhCCCeEEEEEEcCCccHHHH
Confidence 5899999999999874 45544322110 0 0 0122334455 689999999999999999999999999999
Q ss_pred HHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEe
Q 011562 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCN 240 (483)
Q Consensus 161 ~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~is 240 (483)
++.|+++||+++++. .++. .|+.++++++++++........ ...........+.+.....++++|++|++
T Consensus 72 ~~~l~~~gI~~~~~~-~~~~--------~t~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~v~~s 141 (304)
T cd01172 72 RKLLEKEGIDTDGIV-DEGR--------PTTTKTRVIARNQQLLRVDRED-DSPLSAEEEQRLIERIAERLPEADVVILS 141 (304)
T ss_pred HHHHHhCCCCcceEe-cCCC--------CceEEEEEecCCcEEEEEecCC-CCCCCHHHHHHHHHHHHHhhccCCEEEEE
Confidence 999999999999853 3332 3666667776543322222111 11111111122223344567899999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC-----CHH
Q 011562 241 GYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NPI 315 (483)
Q Consensus 241 G~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~-----~~~ 315 (483)
++.+..++.+.+..+++.++++|+++++|++.+.. ..++++|++++|++|++.+++.. +..
T Consensus 142 ~~~~~~~~~~~~~~~~~~a~~~~~~v~~D~~~~~~--------------~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~ 207 (304)
T cd01172 142 DYGKGVLTPRVIEALIAAARELGIPVLVDPKGRDY--------------SKYRGATLLTPNEKEAREALGDEINDDDELE 207 (304)
T ss_pred cCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCcch--------------hhccCCcEeCCCHHHHHHHhCCCCCChHHHH
Confidence 88777778889999999999999999999975421 46779999999999999999862 455
Q ss_pred HHHHHHHH-cCCCccEEEEEeCCCcEEEEE-CCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011562 316 TAGQELLR-KGLRTKWVVVKMGPRGSILVT-KSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVG 393 (483)
Q Consensus 316 ~~~~~l~~-~g~~~~~vVvT~G~~G~~~~~-~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaA 393 (483)
+.++.+++ .|+ +.||||+|++|+++++ +++.+++|+++++++|||||||+|+|||+++|++|+++++|+++|+++|
T Consensus 208 ~~~~~l~~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGDaf~ag~i~~l~~g~~~~~al~~a~a~A 285 (304)
T cd01172 208 AAGEKLLELLNL--EALLVTLGEEGMTLFERDGEVQHIPALAKEVYDVTGAGDTVIATLALALAAGADLEEAAFLANAAA 285 (304)
T ss_pred HHHHHHHHHhCC--CeEEEEcCCCccEEEcCCCcEEEecCCCCCCCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 66676764 454 8899999999999998 7778999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCC
Q 011562 394 AATAMGCGAGR 404 (483)
Q Consensus 394 a~~v~~~G~~~ 404 (483)
++++++.|+..
T Consensus 286 a~~~~~~g~~~ 296 (304)
T cd01172 286 GVVVGKVGTAP 296 (304)
T ss_pred heeeecCCCCC
Confidence 99999999753
No 28
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=100.00 E-value=1.3e-39 Score=322.90 Aligned_cols=291 Identities=29% Similarity=0.436 Sum_probs=236.6
Q ss_pred CccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHH
Q 011562 81 SIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (483)
Q Consensus 81 ~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i 160 (483)
|.+|+|+|++++|++..++.+ .+... + ........||++.|+|.+|++||.+|.++|.+|+|.+|+.+
T Consensus 1 m~~v~~iG~~~iD~~~~~~~~-~~~~~-~----------~~~~~~~~GG~~~n~a~~l~~LG~~v~~i~~vG~D~~g~~i 68 (301)
T PF00294_consen 1 MKKVLVIGEVNIDIIGYVDRF-KGDLV-R----------VSSVKRSPGGAGANVAIALARLGADVALIGKVGDDFFGEII 68 (301)
T ss_dssp EEEEEEESEEEEEEEEESSSH-TTSEE-E----------ESEEEEEEESHHHHHHHHHHHTTSEEEEEEEEESSHHHHHH
T ss_pred CCcEEEECccceEEEeecCCc-CCcce-e----------cceEEEecCcHHHHHHHHHHhccCcceEEeeccCcchhhhh
Confidence 457999999999999998876 33221 1 12456667888999999999999999999999999999999
Q ss_pred HHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEe
Q 011562 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCN 240 (483)
Q Consensus 161 ~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~is 240 (483)
++.|++.||+++++.+.++. +|+.++++++++|++.+............+ ......+.++++++++
T Consensus 69 ~~~l~~~gv~~~~i~~~~~~--------~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 134 (301)
T PF00294_consen 69 LEELKERGVDTSYIPRDGDE--------PTGRCLIIVDPDGERTFVFSPGANSDLTPD------ELDEEAIDEADILHLS 134 (301)
T ss_dssp HHHHHHTTEEETTEEEESSS--------EEEEEEEEEETTSEEEEEEEEGGGGGGGHH------HHHHHHHHTESEEEEE
T ss_pred hhcccccccccccccccccc--------ccceeEeeecccccceeeeccccccccccc------cccccccccccceeec
Confidence 99999999999999866553 499999999988888775443321111111 1145567899999999
Q ss_pred c-CCCCCCCHHHHHHHHHHHHHcC--CeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC--CHH
Q 011562 241 G-YGFDELSPALIISALEYAAQVG--TSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR--NPI 315 (483)
Q Consensus 241 G-~~~~~~~~~~~~~li~~a~~~g--~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~--~~~ 315 (483)
| +.....+.+.+..+.+.+++.+ .+++.++.. ...++.+.++++++|++++|++|+..+++.. +.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~ 205 (301)
T PF00294_consen 135 GVSLPEGIPEDLLEALAKAAKKNGPFDPVFRDPSW---------DDLREDLKELLPYADILKPNEEEAEALTGSKIDDPE 205 (301)
T ss_dssp SGHCSTTSHHHHHHHHHHHHHHTTEEEEEEEGGGS---------HHHHHHHHHHHHTSSEEEEEHHHHHHHHTCSTSSHH
T ss_pred ccccccccccceeeecccccccccccccccccccc---------cccchhhhhhccccchhccccccccccccccccchh
Confidence 9 5556677788888888888887 456666531 1146788899999999999999999999987 555
Q ss_pred HHH---HHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecC-ccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 011562 316 TAG---QELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPA-FKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANA 391 (483)
Q Consensus 316 ~~~---~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa-~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~a 391 (483)
++. ++++..|. +.+|+|+|++|++++++++.+++++ ++++++|+|||||+|+|||++++++|+++++|+++|++
T Consensus 206 ~~~~~~~~l~~~g~--~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~A~~i~~l~~~~~~~~a~~~a~~ 283 (301)
T PF00294_consen 206 DALAALRELQARGV--KIVIVTLGEDGALYYTNDESYHVPPVPPVNVVDTTGAGDAFAAGFIYGLLSGMSLEEALKFANA 283 (301)
T ss_dssp HHHHHHHHHHHTTS--SEEEEEEGGGEEEEEETTEEEEEEEESSSSSSSCTTHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hhhccccccchhhh--hhhhccccccCcccccccccccccccccccccceeccchhhhHHHHHHHHcCCCHHHHHHHHHH
Confidence 544 44455776 8899999999999999999999998 56799999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCCCC
Q 011562 392 VGAATAMGCGAGRNVAT 408 (483)
Q Consensus 392 aAa~~v~~~G~~~~~p~ 408 (483)
+|++++++.|+..++||
T Consensus 284 ~aa~~v~~~g~~~~~p~ 300 (301)
T PF00294_consen 284 AAALKVQQPGPRSPLPT 300 (301)
T ss_dssp HHHHHHTSSSSSGGTT-
T ss_pred HHHHHhCCCCCcCCCCC
Confidence 99999999999888886
No 29
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=100.00 E-value=1.7e-38 Score=315.68 Aligned_cols=294 Identities=26% Similarity=0.325 Sum_probs=235.4
Q ss_pred EECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHHHHH
Q 011562 86 TLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQ 165 (483)
Q Consensus 86 viG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~~L~ 165 (483)
|-=++.+|+++.++++ ..++..+. .....++||++.|+|++++|||.++.++|.+|+| +|+.+++.|+
T Consensus 4 ~~~~~~~D~~~~~~~~-~~~~~~~~----------~~~~~~~GG~~~N~a~~l~~lg~~~~~i~~vG~D-~g~~i~~~l~ 71 (303)
T TIGR03168 4 VTLNPAIDLTIEVDGL-TPGEVNRV----------AAVRKDAGGKGINVARVLARLGAEVVATGFLGGF-TGEFIEALLA 71 (303)
T ss_pred EEcchHHeEEEEcCcc-ccCceeec----------CcccccCCcchhhHHHHHHHcCCCeEEEEEeCCc-hhHHHHHHHH
Confidence 4457889999999996 43433321 2345667888999999999999999999999999 7999999999
Q ss_pred HcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecCCCC
Q 011562 166 DEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFD 245 (483)
Q Consensus 166 ~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~~~~ 245 (483)
+.||++.++.... .|+.++++++++|++..+...+.. ........+...+.+.+++++++|++|+...
T Consensus 72 ~~gI~~~~i~~~~----------~t~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~ 139 (303)
T TIGR03168 72 EEGIKNDFVEVKG----------ETRINVKIKESSGEETELNEPGPE--ISEEELEQLLEKLRELLASGDIVVISGSLPP 139 (303)
T ss_pred HcCCCceEEECCC----------CCEEeEEEEeCCCCEEEEeCcCCC--CCHHHHHHHHHHHHHhccCCCEEEEeCCCCC
Confidence 9999999886532 255666777777776644332211 1122222222333455789999999998766
Q ss_pred CCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC-----CHHHHHHH
Q 011562 246 ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NPITAGQE 320 (483)
Q Consensus 246 ~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~-----~~~~~~~~ 320 (483)
..+.+.+..+++.++++|.++++|++.. ...+.+..++|++++|++|+..++|.. +..++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~g~~v~~D~~~~------------~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~ 207 (303)
T TIGR03168 140 GVPPDFYAQLIAIARKRGAKVILDTSGE------------ALREALAAKPFLIKPNHEELEELFGRELKTEEEIIEAARE 207 (303)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEECCcH------------HHHHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 6778889999999999999999999631 111234458999999999999999863 45567778
Q ss_pred HHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccc
Q 011562 321 LLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAMGC 400 (483)
Q Consensus 321 l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~~~ 400 (483)
+.+.|+ +.+|||+|++|++++++++.+++|+++++++|++||||+|+|||++++++|+++++|+++|+++|+.++++.
T Consensus 208 l~~~g~--~~vviT~g~~G~~~~~~~~~~~~~~~~~~~vDttGAGD~F~a~~~~~l~~g~~i~~a~~~A~~~aa~~~~~~ 285 (303)
T TIGR03168 208 LLDRGA--ENVLVSLGADGALLVTKEGALKATPPKVEVVNTVGAGDSMVAGFLAGLARGLSLEEALRFAVAAGSAAAFSP 285 (303)
T ss_pred HHHcCC--CEEEEeecCCCcEEEeCCceEEeeCCcceeecCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC
Confidence 888776 789999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHhc
Q 011562 401 GAGRNVATLERVIELMRAS 419 (483)
Q Consensus 401 G~~~~~p~~~ev~~~l~~~ 419 (483)
|+. +|+++++++++.+.
T Consensus 286 G~~--~~~~~~~~~~~~~~ 302 (303)
T TIGR03168 286 GTG--LPDPEDVEELLDQV 302 (303)
T ss_pred CcC--CCCHHHHHHHHhhc
Confidence 974 79999999988764
No 30
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=100.00 E-value=9.3e-39 Score=318.47 Aligned_cols=300 Identities=17% Similarity=0.199 Sum_probs=237.3
Q ss_pred EEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHHH
Q 011562 84 VATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDV 163 (483)
Q Consensus 84 VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~~ 163 (483)
+.|.=++++|.++.+++++.++.. +. .....++||++.|+|++|++||.++.++|.+|+| +|+++++.
T Consensus 2 ~~~~~~p~~d~~~~~~~~~~~~~~-~~----------~~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~~-~G~~i~~~ 69 (309)
T TIGR01231 2 LTVTLNPSVDISYPLTALKLDTVN-RV----------QEVSKTAGGKGLNVTRVLAQVGDPVLASGFLGGK-LGEFIEKE 69 (309)
T ss_pred EEEEcchHHeEEEEcCCeeeCceE-ee----------ceeeecCCccHHHHHHHHHHcCCCeEEEEEecCh-hHHHHHHH
Confidence 456789999999999998887743 21 1345567888999999999999999999999975 99999999
Q ss_pred HHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecCC
Q 011562 164 LQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYG 243 (483)
Q Consensus 164 L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~~ 243 (483)
|++.||+++++...+ .|+.++++++ +|+++++...+... .......+.....+.+.+++++|++|+.
T Consensus 70 l~~~GV~~~~~~~~~----------~t~~~~~~~~-~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~g~~ 136 (309)
T TIGR01231 70 LDHSDIKHAFYKISG----------ETRNCIAILH-EGQQTEILEQGPEI--SNQEAAGFLKHFEQLLEKVEVVAISGSL 136 (309)
T ss_pred HHHcCCceeEEECCC----------CCEEeEEEEe-CCCEEEEeCCCCCC--CHHHHHHHHHHHHHHhccCCEEEEECCC
Confidence 999999999886532 2555556664 46776654333221 1111111123334567899999999987
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC---CHH---HH
Q 011562 244 FDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR---NPI---TA 317 (483)
Q Consensus 244 ~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~---~~~---~~ 317 (483)
+...+.+.+.++++.++++|+++++|++++. .+.+...+.++|++++|++|++.++|.+ +.. +.
T Consensus 137 ~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~----------~~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~ 206 (309)
T TIGR01231 137 PKGLPQDYYAQIIERCQNKGVPVVLDCSGAT----------LQTVLENPAKPTVIKPNIEELSQLLNQELTEDLESLKQA 206 (309)
T ss_pred CCCcCHHHHHHHHHHHHhCCCeEEEECChHH----------HHHHHhccCCCeEEcCCHHHHHHHhCCCCCCCHHHHHHH
Confidence 6666778889999999999999999997421 1233445678999999999999999852 333 34
Q ss_pred HHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 011562 318 GQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATA 397 (483)
Q Consensus 318 ~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v 397 (483)
++.++..|+ +.||+|+|++|++++.+++.+++++++++++|||||||+|+|||+++|++|+++++|+++|+++|++++
T Consensus 207 ~~~~~~~g~--~~vivT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~agfl~~l~~g~~~~~a~~~a~a~aa~~~ 284 (309)
T TIGR01231 207 LSQPLFSGI--EWIIVSLGAQGAFAKHGHTFYKVNIPTISVVNPVGSGDSTVAGITSALLNHESDHDLLKKANTLGMLNA 284 (309)
T ss_pred HHHHHHcCC--CEEEEccCCCceEEEeCCeeEEeeCCccCcCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 555556666 789999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCHHHHHHHHHhcCCC
Q 011562 398 MGCGAGRNVATLERVIELMRASNLN 422 (483)
Q Consensus 398 ~~~G~~~~~p~~~ev~~~l~~~~~~ 422 (483)
++.+. +..++++++++++++.++
T Consensus 285 ~~~~~--~~~~~~~~~~~~~~i~~~ 307 (309)
T TIGR01231 285 QEAQT--GHVNLNNYDDLFNQIEVL 307 (309)
T ss_pred cCccc--CCCCHHHHHHHHhceEEE
Confidence 98875 477899999999988765
No 31
>PRK09954 putative kinase; Provisional
Probab=100.00 E-value=9.7e-39 Score=325.07 Aligned_cols=294 Identities=17% Similarity=0.226 Sum_probs=224.6
Q ss_pred ccEEEECCceeEEEecCC-CCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHH
Q 011562 82 IDVATLGNLCVDIVLNVP-QLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (483)
Q Consensus 82 ~~VlviG~~~iD~~~~v~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i 160 (483)
..|+|+|++++|+++.++ .+|.++.. +......+||.+.|+|++++|||.+|.++|.||+|.+|+++
T Consensus 58 ~~v~viG~~~vD~~~~~~~~~p~~~~~------------~~~~~~~~GG~~~NvA~~larLG~~v~~ig~VG~D~~G~~i 125 (362)
T PRK09954 58 EYCVVVGAINMDIRGMADIRYPQAASH------------PGTIHCSAGGVGRNIAHNLALLGRDVHLLSAIGDDFYGETL 125 (362)
T ss_pred ccEEEEEEEEEEEEEeeCCcCcCCCCC------------CceEEEecCcHHHHHHHHHHHcCCCeEEEEEECCCHHHHHH
Confidence 379999999999999987 67765531 12334556888999999999999999999999999999999
Q ss_pred HHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccC-CCCChhhhhhhhccHHHHHhhcCCcEEEE
Q 011562 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRAD-FSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (483)
Q Consensus 161 ~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~l~~~~~v~i 239 (483)
++.|++.||+++++...++.+ |+.+++++++++++.+..... .......+ ........+..++++++
T Consensus 126 ~~~l~~~GVd~~~~~~~~~~~--------T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~ 193 (362)
T PRK09954 126 LEETRRAGVNVSGCIRLHGQS--------TSTYLAIANRQDETVLAINDTHILQQLTPQ----LLNGSRDLIRHAGVVLA 193 (362)
T ss_pred HHHHHHcCCCccceEEcCCCC--------CeEEEEEEcCCCCEEEEEcCchhhhcCCHH----HHHHHHHHHhcCCEEEE
Confidence 999999999999987766543 777778777665544322110 11111111 11222344678899998
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC-----CH
Q 011562 240 NGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NP 314 (483)
Q Consensus 240 sG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~-----~~ 314 (483)
++ +.+.+.+..+++.+ +++++++|+.+.. ....+.++++++|++++|++|++.++|.. +.
T Consensus 194 ~~----~~~~~~~~~~~~~a--~~~~v~~D~~~~~---------~~~~~~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~ 258 (362)
T PRK09954 194 DC----NLTAEALEWVFTLA--DEIPVFVDTVSEF---------KAGKIKHWLAHIHTLKPTQPELEILWGQAITSDADR 258 (362)
T ss_pred EC----CCCHHHHHHHHHhC--CCCcEEEECCCHH---------HhhhhhhhhccccEEecCHHHHHHHcCCCCCCHHHH
Confidence 84 45566666666655 4799999986421 01235678999999999999999999852 34
Q ss_pred HHHHHHHHHcCCCccEEEEEeCCCcEEEEECC-eeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011562 315 ITAGQELLRKGLRTKWVVVKMGPRGSILVTKS-SISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVG 393 (483)
Q Consensus 315 ~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~-~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaA 393 (483)
.++++.+++.|+ +.||||+|++|++++..+ ..+++|+++++++|||||||+|+|||++++++|+++++|+++|+++|
T Consensus 259 ~~~~~~l~~~g~--~~Vvvt~G~~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Ag~l~~l~~g~~~~eal~~a~a~A 336 (362)
T PRK09954 259 NAAVNALHQQGV--QQIFVYLPDESVFCSEKDGEQFLLTAPAHTTVDSFGADDGFMAGLVYSFLEGYSFRDSARFAMACA 336 (362)
T ss_pred HHHHHHHHHcCC--CEEEEEeCCccEEEEeCCCceEeccCCCcccccccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 567788888876 789999999999988755 46778999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCCCCCHHHHHHHH
Q 011562 394 AATAMGCGAGRNVATLERVIELM 416 (483)
Q Consensus 394 a~~v~~~G~~~~~p~~~ev~~~l 416 (483)
++++.+..+...-.+.+.+++++
T Consensus 337 al~~~s~~~~~~~~~~~~~~~~~ 359 (362)
T PRK09954 337 AISRASGSLNNPTLSADNALSLV 359 (362)
T ss_pred HHHhcCCCcCCCcCCHHHHHHHh
Confidence 99977555443334777777665
No 32
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.2e-38 Score=310.54 Aligned_cols=264 Identities=21% Similarity=0.308 Sum_probs=215.0
Q ss_pred cEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHH
Q 011562 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (483)
Q Consensus 83 ~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~ 162 (483)
+|+|+|++++|+++.++.+|.++...+. ......+||++.|+|.+|++||.++.++|.+|+|.+|+++++
T Consensus 1 ~il~iG~~~iD~~~~~~~~~~~~~~~~~----------~~~~~~~GG~~~Nva~~l~~lG~~~~~i~~vG~D~~g~~i~~ 70 (265)
T cd01947 1 KIAVVGHVEWDIFLSLDAPPQPGGISHS----------SDSRESPGGGGANVAVQLAKLGNDVRFFSNLGRDEIGIQSLE 70 (265)
T ss_pred CEEEEeeeeEEEEEEecCCCCCCceeec----------ccceeecCchHHHHHHHHHHcCCceEEEEEecCChHHHHHHH
Confidence 5899999999999999998887754332 244566789999999999999999999999999999999999
Q ss_pred HHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecC
Q 011562 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (483)
Q Consensus 163 ~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~ 242 (483)
.|++ ++++..+...+. .|+.++++++++|++.+....... . ..+. .+.+.+++++|++++
T Consensus 71 ~l~~-~~~~~~~~~~~~---------~t~~~~~~~~~~g~r~~~~~~~~~----~---~~~~---~~~~~~~~~~~~~~~ 130 (265)
T cd01947 71 ELES-GGDKHTVAWRDK---------PTRKTLSFIDPNGERTITVPGERL----E---DDLK---WPILDEGDGVFITAA 130 (265)
T ss_pred HHHh-cCCcceEEecCC---------CCceEEEEECCCCcceEEecCCCC----c---ccCC---HhHhccCCEEEEecc
Confidence 9999 999887754322 488888999988888765432111 0 1111 224678999999975
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHHHHHHHHH
Q 011562 243 GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQELL 322 (483)
Q Consensus 243 ~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~~l~ 322 (483)
. ...++++.+++++ .+++|++++.. .+.+.++++++|++++|++|+..+++ ++.+.
T Consensus 131 ~-------~~~~~~~~a~~~~-~~~~d~~~~~~---------~~~~~~~~~~~d~~~~n~~e~~~l~~-------~~~~~ 186 (265)
T cd01947 131 A-------VDKEAIRKCRETK-LVILQVTPRVR---------VDELNQALIPLDILIGSRLDPGELVV-------AEKIA 186 (265)
T ss_pred c-------ccHHHHHHHHHhC-CeEeccCcccc---------chhHHHHhhhCCEEEeCHHHHHHhhh-------HHHHH
Confidence 4 1246677777775 57788875432 12456889999999999999998864 45666
Q ss_pred HcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccCC
Q 011562 323 RKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAMGCGA 402 (483)
Q Consensus 323 ~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~~~G~ 402 (483)
+.+. +.+|||+|++|++++++++.+++++++++++|||||||+|+|||++++++|+++++|+++|+++|+.++++.|+
T Consensus 187 ~~~~--~~viit~G~~Ga~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~~~~al~~a~~~Aa~~v~~~G~ 264 (265)
T cd01947 187 GPFP--RYLIVTEGELGAILYPGGRYNHVPAKKAKVPDSTGAGDSFAAGFIYGLLKGWSIEEALELGAQCGAICVSHFGP 264 (265)
T ss_pred hccC--CEEEEEeCCCCeEEEECCeeEECCCCCCCCCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCC
Confidence 7665 88999999999999998888999999999999999999999999999999999999999999999999999985
No 33
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-38 Score=303.57 Aligned_cols=298 Identities=23% Similarity=0.308 Sum_probs=251.0
Q ss_pred EEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHHH
Q 011562 84 VATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDV 163 (483)
Q Consensus 84 VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~~ 163 (483)
+.+.=|+.+|.++.++++..... +|. ......+||+|.|||..|+.||.++...|.+|.+ .|+++.+.
T Consensus 3 ~TvTLNPaiD~~~~l~~l~~g~v-Nr~----------~~~~~~aGGKGINVa~vL~~lG~~~~a~GflGg~-tg~~~~~~ 70 (310)
T COG1105 3 YTVTLNPALDYTVFLDELELGEV-NRV----------RAVTKTAGGKGINVARVLKDLGIPVTALGFLGGF-TGEFFVAL 70 (310)
T ss_pred EEEecChhHhheeecccccccce-eee----------ccceecCCCCceeHHHHHHHcCCCceEEEecCCc-cHHHHHHH
Confidence 44557999999999988866443 222 2456778999999999999999999999999999 99999999
Q ss_pred HHHcCCCccceeecCCCCccccCcccceeEEEEECC-CCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecC
Q 011562 164 LQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDP-SQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (483)
Q Consensus 164 L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~ 242 (483)
|++.||...++.+.. +|+.++-+.+. ++..+-+...+. .......+.+.+.+...+.+.|+|+++|+
T Consensus 71 l~~~gi~~~fv~v~g----------~TRinvki~~~~~~~~Tein~~Gp--~is~~~~~~~l~~~~~~l~~~d~VvlsGS 138 (310)
T COG1105 71 LKDEGIPDAFVEVKG----------DTRINVKILDEEDGEETEINFPGP--EISEAELEQFLEQLKALLESDDIVVLSGS 138 (310)
T ss_pred HHhcCCCceEEEccC----------CCeeeEEEEecCCCcEEEecCCCC--CCCHHHHHHHHHHHHHhcccCCEEEEeCC
Confidence 999999999997765 38888888877 343333332222 12333445555666677899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc-CCCEEEcCHHHHHHhhCCC-----CHHH
Q 011562 243 GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS-TSDVLLLTSDEAESLTGLR-----NPIT 316 (483)
Q Consensus 243 ~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~-~~dil~~N~~Ea~~l~g~~-----~~~~ 316 (483)
.+..++.+.+.++++.+++.|++|++|.+. +.|...++ ..++++||.+|++.++|.+ |..+
T Consensus 139 lP~g~~~d~y~~li~~~~~~g~~vilD~Sg-------------~~L~~~L~~~P~lIKPN~~EL~~~~g~~~~~~~d~i~ 205 (310)
T COG1105 139 LPPGVPPDAYAELIRILRQQGAKVILDTSG-------------EALLAALEAKPWLIKPNREELEALFGRELTTLEDVIK 205 (310)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEECCh-------------HHHHHHHccCCcEEecCHHHHHHHhCCCCCChHHHHH
Confidence 999999999999999999999999999963 23444443 5899999999999999875 6778
Q ss_pred HHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 011562 317 AGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAAT 396 (483)
Q Consensus 317 ~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~ 396 (483)
+++.++..|+ ++|||++|++|++++++++.|++.++++++++|+||||++.|||++++.+++++++++++|+|+|+++
T Consensus 206 ~a~~l~~~g~--~~ViVSlG~~Gal~~~~~~~~~a~~p~~~vvstVGAGDs~VAGf~~~~~~~~~~e~~l~~avA~g~a~ 283 (310)
T COG1105 206 AARELLAEGI--ENVIVSLGADGALLVTAEGVYFASPPKVQVVSTVGAGDSMVAGFLAGLLKGKSLEEALRFAVACGAAA 283 (310)
T ss_pred HHHHHHHCCC--CEEEEEecCcccEEEccCCeEEEeCCCcceecCcCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 8888898887 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCHHHHHHHHHhcCCC
Q 011562 397 AMGCGAGRNVATLERVIELMRASNLN 422 (483)
Q Consensus 397 v~~~G~~~~~p~~~ev~~~l~~~~~~ 422 (483)
+++.+. +.++++++++++.+..++
T Consensus 284 ~~~~~~--~~~~~~~~~~~~~~v~v~ 307 (310)
T COG1105 284 ASQKGT--GIPDLDQLKKIYAQVTVE 307 (310)
T ss_pred hhcCCC--CCCCHHHHHHHhhheEEE
Confidence 999884 589999999999987664
No 34
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=100.00 E-value=2.4e-38 Score=312.65 Aligned_cols=278 Identities=19% Similarity=0.254 Sum_probs=214.0
Q ss_pred cEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHH
Q 011562 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (483)
Q Consensus 83 ~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~ 162 (483)
+|+|+|++++|+++.++++|..+...+. ......+||.+.|+|.+|++||.++.++|.+|+|++|+++++
T Consensus 1 ~v~~iG~~~vD~~~~v~~~p~~~~~~~~----------~~~~~~~GG~a~NvA~~la~lG~~~~~~~~vG~D~~g~~~~~ 70 (290)
T cd01939 1 AVLCVGLTVLDFITTVDKYPFEDSDQRT----------TNGRWQRGGNASNSCTVLRLLGLSCEFLGVLSRGPVFESLLD 70 (290)
T ss_pred CEEEEeeeeeEEEeeecCCCCCCcceEe----------eeeeEecCCCHHHHHHHHHHcCCceEEEEeecCCHHHHHHHH
Confidence 4899999999999999999987764321 123455788899999999999999999999999999999999
Q ss_pred HHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecC
Q 011562 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (483)
Q Consensus 163 ~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~ 242 (483)
.|++.||+++++...++.. +..++++++++|++.++...........+.+. ...+++++++|++|+
T Consensus 71 ~l~~~gId~~~~~~~~~~~--------~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~ 136 (290)
T cd01939 71 DFQSRGIDISHCYRKDIDE--------PASSYIIRSRAGGRTTIVNDNNLPEVTYDDFS------KIDLTQYGWIHFEGR 136 (290)
T ss_pred HHHHcCCceeeeeEcCCCC--------CeeEEEEEcCCCCeEEEEeCCCCCCCCHHHHh------hhhhccCCEEEEecc
Confidence 9999999999986544322 45567777777777665433222111111111 123478999999976
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-------CeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHH
Q 011562 243 GFDELSPALIISALEYAAQVG-------TSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPI 315 (483)
Q Consensus 243 ~~~~~~~~~~~~li~~a~~~g-------~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~ 315 (483)
.+ +...++++.+++.+ +++++|++... +.+..+++++|++++|++|++.+ +..+..
T Consensus 137 ~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~-----------~~~~~~l~~~di~~~n~~~~~~~-~~~~~~ 199 (290)
T cd01939 137 NP-----DETLRMMQHIEEHNNRRPEIRITISVEVEKPR-----------EELLELAAYCDVVFVSKDWAQSR-GYKSPE 199 (290)
T ss_pred CH-----HHHHHHHHHHHHhcCcCCCcceEEEEEeccCc-----------hhhhhHHhhCCEEEEEhHHHHhc-CcCCHH
Confidence 42 45567777777766 68889886431 22458899999999999998764 666666
Q ss_pred HHHHHHHHcCCCccEEEEEeCCCcEEEEEC-CeeEEecCccc-cccCCCCchHHHHHHHHHHHHcCCC-HHHHHHHHHHH
Q 011562 316 TAGQELLRKGLRTKWVVVKMGPRGSILVTK-SSISCAPAFKV-NVTDTVGCGDSFVAAVAFGFIHNMP-TVNTLTIANAV 392 (483)
Q Consensus 316 ~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~-~~~~~vpa~~v-~vvDttGAGDaF~Ag~l~gl~~g~~-l~~al~~A~aa 392 (483)
+++..+.....+++.||||+|++|++++.+ +..+++|++++ +++||+||||+|+|||++++++|++ +++|+++|+++
T Consensus 200 ~~~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~vvDt~GAGDsf~agfl~~l~~g~~~~~~a~~~a~a~ 279 (290)
T cd01939 200 ECLRGEGPRAKKAALLVCTWGDQGAGALGPDGEYVHSPAHKPIRVVDTLGAGDTFNAAVIYALNKGPDDLSEALDFGNRV 279 (290)
T ss_pred HHHHhhhhhccCCcEEEEEcccCCeEEEcCCCCEEEecCCCCCCcccCCCchHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 655444322223478999999999999886 45778998875 6999999999999999999999995 99999999999
Q ss_pred HHHHhcccC
Q 011562 393 GAATAMGCG 401 (483)
Q Consensus 393 Aa~~v~~~G 401 (483)
|++++++.|
T Consensus 280 aa~~i~~~G 288 (290)
T cd01939 280 ASQKCTGVG 288 (290)
T ss_pred HHHHHhhhc
Confidence 999999987
No 35
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=100.00 E-value=7.1e-38 Score=312.11 Aligned_cols=298 Identities=21% Similarity=0.237 Sum_probs=234.3
Q ss_pred EEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHHH
Q 011562 84 VATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDV 163 (483)
Q Consensus 84 VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~~ 163 (483)
+.+.=|+.+|+++.+++++..+. .+. ......+||++.|+|++|++||.++.+++.+|+ .+|+++++.
T Consensus 5 ~~~~~~p~~d~~~~~~~~~~~~~-~~~----------~~~~~~~GG~~~NvA~~l~~lG~~~~~i~~vG~-~~g~~i~~~ 72 (309)
T PRK10294 5 YTLTLAPSLDSATITPQIYPEGK-LRC----------SAPVFEPGGGGINVARAIAHLGGSATAIFPAGG-ATGEHLVSL 72 (309)
T ss_pred EEEecChHHeEEEEeCceeeCCe-EEe----------ccceecCCccHHHHHHHHHHcCCCeEEEEEecC-ccHHHHHHH
Confidence 44557999999999999975443 322 244556788899999999999999999999997 699999999
Q ss_pred HHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecCC
Q 011562 164 LQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYG 243 (483)
Q Consensus 164 L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~~ 243 (483)
|++.||+++++...++ .+..+++.++++|++.++...+.. ...+.+..+...+ ..++.+++++++|+.
T Consensus 73 l~~~gv~~~~~~~~~~---------~~~~~~i~~~~~g~~~~~~~~~~~--~~~~~~~~l~~~~-~~~~~~~~~~i~g~~ 140 (309)
T PRK10294 73 LADENVPVATVEAKDW---------TRQNLHVHVEASGEQYRFVMPGAA--LNEDEFRQLEEQV-LEIESGAILVISGSL 140 (309)
T ss_pred HHHcCCCceEEECCCC---------CeeeEEEEEcCCCcEEEEECCCCC--CCHHHHHHHHHHH-HhcCCCCEEEEeCCC
Confidence 9999999999876432 133445667777776654443322 1222222222222 235789999999988
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC-----CHHHHH
Q 011562 244 FDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NPITAG 318 (483)
Q Consensus 244 ~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~-----~~~~~~ 318 (483)
+...+.+.+.++++.+++.|+++++|++.. ..++. ..++++|++++|++|+..+++.. +..+++
T Consensus 141 ~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~---------~~~~~--~~~~~~~~i~~n~~E~~~l~g~~~~~~~~~~~a~ 209 (309)
T PRK10294 141 PPGVKLEKLTQLISAAQKQGIRCIIDSSGD---------ALSAA--LAIGNIELVKPNQKELSALVNRDLTQPDDVRKAA 209 (309)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEeCCCH---------HHHHH--HhcCCCeEECCCHHHHHHHhCCCCCCHHHHHHHH
Confidence 766777899999999999999999999521 11111 12468999999999999999863 345677
Q ss_pred HHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Q 011562 319 QELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAM 398 (483)
Q Consensus 319 ~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~ 398 (483)
+.+++.+ +++.||||+|++|++++++++.+++++++++++|||||||+|+|||+++|++|+++++|+++|+++|+++++
T Consensus 210 ~~l~~~~-~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~ag~l~~l~~g~~~~~al~~a~a~aa~~v~ 288 (309)
T PRK10294 210 QELVNSG-KAKRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENASLEEMVRFGVAAGSAATL 288 (309)
T ss_pred HHHHHcC-CCCEEEEecCCCceEEEcCCccEEEeCCCcccCCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 8888876 237899999999999999888888999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCHHHHHHHHHhc
Q 011562 399 GCGAGRNVATLERVIELMRAS 419 (483)
Q Consensus 399 ~~G~~~~~p~~~ev~~~l~~~ 419 (483)
+.|+. .+++++++++++++
T Consensus 289 ~~G~~--~~~~~~~~~~~~~~ 307 (309)
T PRK10294 289 NQGTR--LCSHDDTQKIYAYL 307 (309)
T ss_pred CCCCC--CCCHHHHHHHHHHh
Confidence 99965 67888898888753
No 36
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=100.00 E-value=6e-38 Score=309.67 Aligned_cols=280 Identities=25% Similarity=0.325 Sum_probs=225.5
Q ss_pred EEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHHH
Q 011562 84 VATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDV 163 (483)
Q Consensus 84 VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~~ 163 (483)
..++|++++|+++.++++|.. ...+. ......+||+++|+|.+|++||.+|.++|.+|+| +|+++++.
T Consensus 3 ~~~~~~~~~D~~~~~~~~~~~-~~~~~----------~~~~~~~GG~~~Nva~~la~lG~~v~~is~vG~D-~g~~i~~~ 70 (289)
T cd01164 3 YTVTLNPAIDLTIELDQLQPG-EVNRV----------SSTRKDAGGKGINVARVLKDLGVEVTALGFLGGF-TGDFFEAL 70 (289)
T ss_pred EEEecChHHeEEEEcCcccCC-ceeec----------ccccccCCcchhHHHHHHHHcCCCeEEEEEccCc-hhHHHHHH
Confidence 468899999999999999753 33321 2456667888999999999999999999999999 89999999
Q ss_pred HHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecCC
Q 011562 164 LQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYG 243 (483)
Q Consensus 164 L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~~ 243 (483)
|++.||++.++.... .|+.++++++.++++..+...+.. ...+....+.+...+.+++++++|++|+.
T Consensus 71 l~~~gi~~~~~~~~~----------~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~g~~ 138 (289)
T cd01164 71 LKEEGIPDDFVEVAG----------ETRINVKIKEEDGTETEINEPGPE--ISEEELEALLEKLKALLKKGDIVVLSGSL 138 (289)
T ss_pred HHHcCCCceEEECCC----------CCEEEEEEEeCCCCEEEEeCCCCC--CCHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 999999999886542 256666777766665554332211 12222233333334556889999999887
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhh-cCCCEEEcCHHHHHHhhCCC-----CHHHH
Q 011562 244 FDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFL-STSDVLLLTSDEAESLTGLR-----NPITA 317 (483)
Q Consensus 244 ~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll-~~~dil~~N~~Ea~~l~g~~-----~~~~~ 317 (483)
+.....+.+..+++.+++.+.++++|++.+ .+.+.+ +++|++++|++|+..+++.. +..++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~D~~~~-------------~~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~ 205 (289)
T cd01164 139 PPGVPADFYAELVRLAREKGARVILDTSGE-------------ALLAALAAKPFLIKPNREELEELFGRPLGDEEDVIAA 205 (289)
T ss_pred CCCcCHHHHHHHHHHHHHcCCeEEEECChH-------------HHHHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHH
Confidence 655666788899999999999999999642 112333 79999999999999999753 45677
Q ss_pred HHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 011562 318 GQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATA 397 (483)
Q Consensus 318 ~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v 397 (483)
++.+++.|. +.+|||+|++|++++.+++.+++++++++++||+||||+|+|||++++.+|+++++|+++|+++|++++
T Consensus 206 ~~~l~~~g~--~~vivt~G~~G~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~g~~~~~a~~~A~~~Aa~~~ 283 (289)
T cd01164 206 ARKLIERGA--ENVLVSLGADGALLVTKDGVYRASPPKVKVVSTVGAGDSMVAGFVAGLAQGLSLEEALRLAVAAGSATA 283 (289)
T ss_pred HHHHHHcCC--CEEEEecCCCCCEEEcCCcEEEecCCCccccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 788888876 789999999999999888888999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 011562 398 MGCGA 402 (483)
Q Consensus 398 ~~~G~ 402 (483)
++.|+
T Consensus 284 ~~~G~ 288 (289)
T cd01164 284 FSPGT 288 (289)
T ss_pred cCccC
Confidence 99885
No 37
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=100.00 E-value=7.8e-38 Score=304.72 Aligned_cols=261 Identities=21% Similarity=0.255 Sum_probs=209.4
Q ss_pred cEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHH
Q 011562 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (483)
Q Consensus 83 ~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~ 162 (483)
+|+|+|++++|++... ...++||++.|+|.++++||.++.++|.+|+|.+|+++++
T Consensus 1 ~v~~iG~~~~D~~~~~------------------------~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~ 56 (264)
T cd01940 1 RLAAIGDNVVDKYLHL------------------------GKMYPGGNALNVAVYAKRLGHESAYIGAVGNDDAGAHVRS 56 (264)
T ss_pred CeEEEcceEEEEeccC------------------------ceecCCCcHHHHHHHHHHcCCCeeEEecccCchhHHHHHH
Confidence 5899999999998531 1234688899999999999999999999999999999999
Q ss_pred HHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCccccccc-CCCCChhhhhhhhccHHHHHhhcCCcEEEEec
Q 011562 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRA-DFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNG 241 (483)
Q Consensus 163 ~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG 241 (483)
.|++.||+++++...++ +|+.+++.. ++|++.+.... +. ...... . ......+.+++++|+++
T Consensus 57 ~l~~~gI~~~~v~~~~~---------~t~~~~~~~-~~g~r~~~~~~~~~----~~~~~~-~-~~~~~~~~~~~~v~~~~ 120 (264)
T cd01940 57 TLKRLGVDISHCRVKEG---------ENAVADVEL-VDGDRIFGLSNKGG----VAREHP-F-EADLEYLSQFDLVHTGI 120 (264)
T ss_pred HHHHcCCChhheEEcCC---------CCceEEEEe-cCCceEEEeecCCc----HHhccc-C-cccHhHHhcCCEEEEcc
Confidence 99999999999876432 366666544 55666654321 11 111100 0 11123468999999996
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHHHHHHHH
Q 011562 242 YGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQEL 321 (483)
Q Consensus 242 ~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~~l 321 (483)
+.+ .+.+.++++.++++|++|++|++.+.. .+.+..+++++|++++|++|.. ..+..++++.+
T Consensus 121 ~~~----~~~~~~~~~~a~~~g~~v~~D~~~~~~---------~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~~~~l 183 (264)
T cd01940 121 YSH----EGHLEKALQALVGAGALISFDFSDRWD---------DDYLQLVCPYVDFAFFSASDLS----DEEVKAKLKEA 183 (264)
T ss_pred ccc----HHHHHHHHHHHHHcCCEEEEcCcccCC---------HHHHHhhcccCCEEEechhhcC----cchHHHHHHHH
Confidence 542 567889999999999999999986421 1346678999999999987753 23556677888
Q ss_pred HHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccc
Q 011562 322 LRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMP-TVNTLTIANAVGAATAMGC 400 (483)
Q Consensus 322 ~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~-l~~al~~A~aaAa~~v~~~ 400 (483)
++.++ +.+|||+|++|++++++++.+++|+++++++|||||||+|+|||++++++|++ +++|+++|+++|++++++.
T Consensus 184 ~~~~~--~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~g~~~~~~al~~a~~~aa~~~~~~ 261 (264)
T cd01940 184 VSRGA--KLVIVTRGEDGAIAYDGAVFYSVAPRPVEVVDTLGAGDSFIAGFLLSLLAGGTAIAEAMRQGAQFAAKTCGHE 261 (264)
T ss_pred HHcCC--CEEEEEECCCCeEEEeCCeEEecCCcCCCCCCCCCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhccc
Confidence 88776 78999999999999998888899999999999999999999999999999999 9999999999999999999
Q ss_pred CC
Q 011562 401 GA 402 (483)
Q Consensus 401 G~ 402 (483)
|+
T Consensus 262 G~ 263 (264)
T cd01940 262 GA 263 (264)
T ss_pred CC
Confidence 85
No 38
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=4e-37 Score=303.42 Aligned_cols=278 Identities=24% Similarity=0.341 Sum_probs=218.7
Q ss_pred cEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHH
Q 011562 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (483)
Q Consensus 83 ~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~ 162 (483)
.|+++|++++|+++.+++.|.++.... ......+||+++|+|.++++||.++.++|.+|+|.+|+.+++
T Consensus 1 ~v~~~G~~~~D~~~~~~~~~~~~~~~~-----------~~~~~~~GG~~~Nva~~l~~lG~~~~~~~~lG~D~~g~~i~~ 69 (288)
T cd01941 1 EIVVIGAANIDLRGKVSGSLVPGTSNP-----------GHVKQSPGGVGRNIAENLARLGVSVALLSAVGDDSEGESILE 69 (288)
T ss_pred CeEEEEeEEEeeeecccCccccCCCCC-----------eeEEEccCcHHHHHHHHHHHhCCCcEEEEEEecCccHHHHHH
Confidence 389999999999999999777664321 123456788899999999999999999999999999999999
Q ss_pred HHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccc-cCCCCChhhhhhhhccHHHHHhhcCCcEEEEec
Q 011562 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSR-ADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNG 241 (483)
Q Consensus 163 ~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG 241 (483)
.|++.||+++.+. ..+. +|+.+++++++++++.+... .... ........+.....+.+++++++++
T Consensus 70 ~L~~~gI~~~~~~-~~~~--------~t~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~v~~~~ 136 (288)
T cd01941 70 ESEKAGLNVRGIV-FEGR--------STASYTAILDKDGDLVVALADMDIY----ELLTPDFLRKIREALKEAKPIVVDA 136 (288)
T ss_pred HHHHcCCccceee-eCCC--------CcceEEEEECCCCCEEEEEechHhh----hhCCHHHHHHHHHHHhcCCEEEEeC
Confidence 9999999999886 3332 48888889988888765211 1100 0010111233445678999999985
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCC-----HHH
Q 011562 242 YGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRN-----PIT 316 (483)
Q Consensus 242 ~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~-----~~~ 316 (483)
..+.+.+..+++.+++.+.++++|++.... + .+ +..+++++|++++|++|+..+++... ..+
T Consensus 137 ----~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~-~-------~~-~~~~~~~~dii~~n~~E~~~~~~~~~~~~~~~~~ 203 (288)
T cd01941 137 ----NLPEEALEYLLALAAKHGVPVAFEPTSAPK-L-------KK-LFYLLHAIDLLTPNRAELEALAGALIENNEDENK 203 (288)
T ss_pred ----CCCHHHHHHHHHhhhhcCCcEEEEccchHH-h-------cc-chhhcccceEEeCCHHHHHHHhCcccCCchhHHH
Confidence 456677889999999999999999864211 0 11 12588999999999999999988642 234
Q ss_pred HHHHHHHcCCCccEEEEEeCCCcEEEEEC---CeeEEecC-ccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011562 317 AGQELLRKGLRTKWVVVKMGPRGSILVTK---SSISCAPA-FKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAV 392 (483)
Q Consensus 317 ~~~~l~~~g~~~~~vVvT~G~~G~~~~~~---~~~~~vpa-~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aa 392 (483)
+++.+.+.++ +.+|||+|++|++++++ +..+++|+ ++++++||+||||+|.|||++++++|+++++|+++|+++
T Consensus 204 ~~~~~~~~~~--~~vvit~G~~Ga~~~~~~~~~~~~~~~~~~~~~~vDttGAGDaf~a~~~~~l~~g~~~~~al~~a~~~ 281 (288)
T cd01941 204 AAKILLLPGI--KNVIVTLGAKGVLLSSREGGVETKLFPAPQPETVVNVTGAGDAFVAGLVAGLLEGMSLDDSLRFAQAA 281 (288)
T ss_pred HHHHHHHcCC--cEEEEEeCCCcEEEEecCCCceeEEecCCCCccceeCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5666777665 78999999999999987 55788898 588999999999999999999999999999999999999
Q ss_pred HHHHhcc
Q 011562 393 GAATAMG 399 (483)
Q Consensus 393 Aa~~v~~ 399 (483)
|+++|+.
T Consensus 282 Aa~~~~~ 288 (288)
T cd01941 282 AALTLES 288 (288)
T ss_pred HHHHhcC
Confidence 9999863
No 39
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=100.00 E-value=3.1e-36 Score=292.89 Aligned_cols=258 Identities=22% Similarity=0.281 Sum_probs=204.6
Q ss_pred ccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHH
Q 011562 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (483)
Q Consensus 82 ~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~ 161 (483)
++|+++|++++|++...+ +.++||++.|+|.+|++||.++.++|.+|+|.+|++++
T Consensus 1 ~~v~~iG~~~~D~~~~~~------------------------~~~~GG~~~NvA~~l~~lG~~~~~is~vG~D~~g~~i~ 56 (260)
T PRK09813 1 KKLATIGDNCVDIYPQLG------------------------KAFSGGNAVNVAVYCTRYGIQPGCITWVGDDDYGTKLK 56 (260)
T ss_pred CeEEEeccceeeecccCC------------------------ccccCccHHHHHHHHHHcCCcceEEEEecCcHHHHHHH
Confidence 579999999999986421 12458889999999999999999999999999999999
Q ss_pred HHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCccccccc-CCCCChhhhhhhhccHHHHHhhcCCcEEEEe
Q 011562 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRA-DFSKEPAFSWMNKLSAEVKTAIKHSKVLFCN 240 (483)
Q Consensus 162 ~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~v~is 240 (483)
+.|++.||+++++.+.++ +|+.+++.++ +++|.+.... ...... .+.+...+.+..++++|++
T Consensus 57 ~~l~~~gI~~~~~~~~~~---------~t~~~~~~~~-~~~r~~~~~~~~~~~~~------~~~~~~~~~l~~~~~v~~~ 120 (260)
T PRK09813 57 QDLARMGVDISHVHTKHG---------VTAQTQVELH-DNDRVFGDYTEGVMADF------ALSEEDYAWLAQYDIVHAA 120 (260)
T ss_pred HHHHHcCCcchheeeecC---------CCceEEEEEe-CCcEEeeccCCCccccc------ccCHHHHHHHHhCCEEEEe
Confidence 999999999999876543 2666667775 4666654322 111111 1112222356789999997
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHHHHHHH
Q 011562 241 GYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQE 320 (483)
Q Consensus 241 G~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~~ 320 (483)
.+. ...++++.++++|+++++|++.+.. .+.+..+++++|+++.|+++.. .+..++++.
T Consensus 121 ~~~-------~~~~~~~~~~~~~~~v~~D~~~~~~---------~~~~~~~~~~~d~~~~~~~~~~-----~~~~~~~~~ 179 (260)
T PRK09813 121 IWG-------HAEDAFPQLHAAGKLTAFDFSDKWD---------SPLWQTLVPHLDYAFASAPQED-----EFLRLKMKA 179 (260)
T ss_pred ccc-------hHHHHHHHHHHcCCeEEEEcCCCcc---------HHHHHHhCCceeEEEecCCcch-----HHHHHHHHH
Confidence 431 1346778888999999999975421 2345678999999998865411 245677788
Q ss_pred HHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccc
Q 011562 321 LLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAMGC 400 (483)
Q Consensus 321 l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~~~ 400 (483)
+.+.|+ +.+|||+|++|++++.+++.+++|+++++++|||||||+|+|||++++.+|+++++|+++|+++|++++++.
T Consensus 180 ~~~~g~--~~viit~G~~Ga~~~~~~~~~~~~~~~~~~vDttGAGDaF~ag~i~~~~~g~~~~~al~~a~~~aa~~~~~~ 257 (260)
T PRK09813 180 IVARGA--GVVIVTLGENGSIAWDGAQFWRQAPEPVTVVDTMGAGDSFIAGFLCGWLAGMTLPQAMAQGTACAAKTIQYH 257 (260)
T ss_pred HHHcCC--CEEEEEECCCceEEEECCEEEecCCcccCCCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc
Confidence 888776 789999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 011562 401 GA 402 (483)
Q Consensus 401 G~ 402 (483)
|+
T Consensus 258 G~ 259 (260)
T PRK09813 258 GA 259 (260)
T ss_pred CC
Confidence 85
No 40
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=100.00 E-value=4.4e-36 Score=316.18 Aligned_cols=296 Identities=18% Similarity=0.203 Sum_probs=223.4
Q ss_pred CCCccEEEECCceeEEEecC--CCCCCC--ChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCC
Q 011562 79 VKSIDVATLGNLCVDIVLNV--PQLPPP--SRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNE 154 (483)
Q Consensus 79 ~~~~~VlviG~~~iD~~~~v--~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D 154 (483)
+..++|+|+|++++|+++.+ +.++.. ..... .......+|| ++|+|++|++||.++.++|.+|+|
T Consensus 8 ~~~~~ilviG~~~lD~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~GG-a~NvA~~la~LG~~v~~i~~vG~D 76 (473)
T PRK11316 8 FERAGVLVVGDVMLDRYWYGPTSRISPEAPVPVVK----------VNQIEERPGG-AANVAMNIASLGAQARLVGLTGID 76 (473)
T ss_pred hCCCcEEEECccEEeeeeecccceeCCCCCCCEEE----------eeeEEecCcH-HHHHHHHHHHcCCcEEEEEEEcCC
Confidence 45678999999999999875 333221 11110 0123334566 799999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCccccccc-CCCCChhhhhhhhccHHHHHhhcC
Q 011562 155 IYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRA-DFSKEPAFSWMNKLSAEVKTAIKH 233 (483)
Q Consensus 155 ~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~l~~ 233 (483)
.+|+++++.|++.||+++.+.. ++. +|+.++++++.+++....... .+. .... +.+.......+++
T Consensus 77 ~~g~~i~~~L~~~gI~~~~v~~-~~~--------~T~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~l~~~~~~~l~~ 143 (473)
T PRK11316 77 EAARALSKLLAAVGVKCDFVSV-PTH--------PTITKLRVLSRNQQLIRLDFEEGFE-GVDP---QPLLERIEQALPS 143 (473)
T ss_pred HHHHHHHHHHHHcCCceeEEEc-CCC--------CCCeeEEEEeCCceEEecccccCCC-chhH---HHHHHHHHHHhcc
Confidence 9999999999999999998865 332 366777777654432221111 010 0011 1112233456789
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC-
Q 011562 234 SKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR- 312 (483)
Q Consensus 234 ~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~- 312 (483)
+++++++++.... .+.+..+++.++++|+++++||++... ..++.+|++++|++|++.++|..
T Consensus 144 ~~~v~is~~~~~~--~~~~~~~~~~~k~~g~~vv~Dp~~~~~--------------~~~~~~dil~pN~~Ea~~l~g~~~ 207 (473)
T PRK11316 144 IGALVLSDYAKGA--LASVQAMIQLARKAGVPVLIDPKGTDF--------------ERYRGATLLTPNLSEFEAVVGKCK 207 (473)
T ss_pred CCEEEEecCCccc--hhHHHHHHHHHHhcCCeEEEeCCCCCc--------------cccCCCeEECcCHHHHHHHhCCCC
Confidence 9999998775322 256788999999999999999975311 34578999999999999999852
Q ss_pred C---HHHHHHHHH-HcCCCccEEEEEeCCCcEEEEECCe-eEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHH
Q 011562 313 N---PITAGQELL-RKGLRTKWVVVKMGPRGSILVTKSS-ISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLT 387 (483)
Q Consensus 313 ~---~~~~~~~l~-~~g~~~~~vVvT~G~~G~~~~~~~~-~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~ 387 (483)
+ ..+.+++++ +.|. +.|+||+|++|++++++++ .+++|+++++++||+||||+|.|||+++|++|+++++|++
T Consensus 208 ~~~~~~~~~~~l~~~~g~--~~vvVT~G~~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~aa~~~~l~~g~~~~~al~ 285 (473)
T PRK11316 208 DEAELVEKGMKLIADYDL--SALLVTRSEQGMTLLQPGKAPLHLPTQAREVYDVTGAGDTVISVLAAALAAGNSLEEACA 285 (473)
T ss_pred CHHHHHHHHHHHHHhcCC--CEEEEEecCCCcEEEecCCceEEecCcCCCCCCCCCCcHHHHHHHHHHHHcCCCHHHHHH
Confidence 2 233455555 4554 7899999999999988776 5889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCCCCCCHHHHHHHHHh
Q 011562 388 IANAVGAATAMGCGAGRNVATLERVIELMRA 418 (483)
Q Consensus 388 ~A~aaAa~~v~~~G~~~~~p~~~ev~~~l~~ 418 (483)
+|+++|++++++.|+. .++.++++++++.
T Consensus 286 ~A~a~Aa~~v~~~G~~--~~~~~~l~~~l~~ 314 (473)
T PRK11316 286 LANAAAGVVVGKLGTS--TVSPIELENALRG 314 (473)
T ss_pred HHHHHHHhhcccCCCc--cCCHHHHHHHHhc
Confidence 9999999999999975 4789999999985
No 41
>PLN02548 adenosine kinase
Probab=100.00 E-value=5.1e-36 Score=301.75 Aligned_cols=264 Identities=17% Similarity=0.231 Sum_probs=202.1
Q ss_pred CCccccCCcHHHHHHHH---HHcCCceEEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEEC
Q 011562 122 DKQYWEAGGNCNVAIAA---ARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVD 198 (483)
Q Consensus 122 ~~~~~~GGg~~NvA~~l---arLG~~v~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd 198 (483)
......||.+.|+|.++ +++|.++.++|.+|+|.+|+++++.|+++||+++++.. .+ .+|+.++++++
T Consensus 46 ~~~~~~GG~~~Nva~~a~~l~~lg~~~~~ig~vG~D~~g~~i~~~L~~~gVd~~~~~~-~~--------~~T~~~~i~~~ 116 (332)
T PLN02548 46 NVEYIAGGATQNSIRVAQWMLQIPGATSYMGCIGKDKFGEEMKKCATAAGVNVHYYED-ES--------TPTGTCAVLVV 116 (332)
T ss_pred CceecCCcHHHHHHHHHHHHhcCCCcEEEEEEEcCChhHHHHHHHHHHcCCceeeecc-CC--------CCCceEEEEEe
Confidence 45566788899976544 56799999999999999999999999999999988743 22 24888888886
Q ss_pred CCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCC
Q 011562 199 PSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLS 278 (483)
Q Consensus 199 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~ 278 (483)
+|+|.++...........+.... ....+.+..++++|++|+.+ ..+.+.+..+++.++++|.++.+|++.. ++
T Consensus 117 -~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~g~~~-~~~~~~~~~~~~~a~~~g~~~~~~~~~~---~~ 189 (332)
T PLN02548 117 -GGERSLVANLSAANCYKVEHLKK--PENWALVEKAKFYYIAGFFL-TVSPESIMLVAEHAAANNKTFMMNLSAP---FI 189 (332)
T ss_pred -cCCceeeeccchhhcCCHHHhcC--hhhHhHHhhCCEEEEEEEEc-cCCHHHHHHHHHHHHHcCCEEEEECCCh---hH
Confidence 67777643322111111111110 11233567899999999865 4567888899999999999888887531 12
Q ss_pred CCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCC-----CCHHHHHHHHHHc----CCCccEEEEEeCCCcEEEEECCeeE
Q 011562 279 SGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL-----RNPITAGQELLRK----GLRTKWVVVKMGPRGSILVTKSSIS 349 (483)
Q Consensus 279 ~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~-----~~~~~~~~~l~~~----g~~~~~vVvT~G~~G~~~~~~~~~~ 349 (483)
. ....+.++++++++|++++|++|+..+++. .+..+.++.+.+. |.+++.||||+|++|++++.+++.+
T Consensus 190 ~--~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~~~~~g~~~~~vvvT~G~~G~~~~~~~~~~ 267 (332)
T PLN02548 190 C--EFFKDQLMEALPYVDFLFGNETEARTFAKVQGWETEDVEEIALKISALPKASGTHKRTVVITQGADPTVVAEDGKVK 267 (332)
T ss_pred H--HHhHHHHHHHHhhCCEEEecHHHHHHHhCccCCCcccHHHHHHHHHHhhhhccccCCEEEEEeCCCcEEEEECCeEE
Confidence 1 123456889999999999999999999874 3455655555432 3234789999999999999988888
Q ss_pred EecCc---cccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccCCC
Q 011562 350 CAPAF---KVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAMGCGAG 403 (483)
Q Consensus 350 ~vpa~---~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~~~G~~ 403 (483)
++|++ +++++|||||||+|+|||++++++|+++++|+++|+++|+++|++.|+.
T Consensus 268 ~~pa~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~l~eal~~a~aaAa~~v~~~G~~ 324 (332)
T PLN02548 268 EFPVIPLPKEKLVDTNGAGDAFVGGFLSQLVQGKDIEECVRAGNYAANVIIQRSGCT 324 (332)
T ss_pred EeccccCCcCccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 88764 3479999999999999999999999999999999999999999999975
No 42
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=100.00 E-value=9.9e-36 Score=298.46 Aligned_cols=275 Identities=19% Similarity=0.186 Sum_probs=210.8
Q ss_pred cEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHc-CC--ce--EEEEEecCChhh
Q 011562 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARL-GL--DC--VTIGHVGNEIYG 157 (483)
Q Consensus 83 ~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larL-G~--~v--~lig~vG~D~~g 157 (483)
+++++|.+.+|++...+. . .....+||++.|+|+++++| |. ++ .+++.+|+| +|
T Consensus 1 ~~~~~G~~~~d~i~~~~~-----~---------------~~~~~~GG~~~N~A~~~~~l~g~~~~~~~~~~~~vG~D-~G 59 (328)
T cd01943 1 DFTTLGMFIIDEIEYPDS-----E---------------PVTNVLGGAGTYAILGARLFLPPPLSRSISWIVDKGSD-FP 59 (328)
T ss_pred CccccCcEEeeccccCCC-----C---------------ccccccCCchhhHhhceeeecCCccccceeeEEecCCC-CC
Confidence 589999999999976431 0 22344688899999999999 44 77 889999999 99
Q ss_pred HHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEE
Q 011562 158 RFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVL 237 (483)
Q Consensus 158 ~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v 237 (483)
+++++.|++.||++++ ...++. +|+.+++++++++++.+..+.........+ .+. ...+..++++
T Consensus 60 ~~l~~~L~~~GVd~~~-~~~~~~--------~Tg~~~v~~~~~g~r~~~~~~~~~~~~~~~---~l~---~~~~~~a~~~ 124 (328)
T cd01943 60 KSVEDELESWGTGMVF-RRDPGR--------LTTRGLNIYDGNDRRFFKYLTPKKRIDVSD---DLN---STPLIRSSCI 124 (328)
T ss_pred HHHHHHHHhcCCceEE-EeCCCC--------cchhhhhhcCCCCcceeeecCccccccccc---ccc---cccccCCCeE
Confidence 9999999999999988 554443 488888888888888776553332111111 111 1236788999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHH------cCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCC
Q 011562 238 FCNGYGFDELSPALIISALEYAAQ------VGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL 311 (483)
Q Consensus 238 ~isG~~~~~~~~~~~~~li~~a~~------~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~ 311 (483)
|+++.... ..+...++++.+++ .+..+++|+++... .....+.+..+++++|++++|++|+..++|.
T Consensus 125 hl~~~~~~--~~~~~~~~~~~a~~~~~d~~~g~~~~~d~~~~~~-----~~~~~~~l~~~l~~~dil~~n~~Ea~~l~g~ 197 (328)
T cd01943 125 HLICSPER--CASIVDDIINLFKLLKGNSPTRPKIVWEPLPDSC-----DPENLEDLLQALPRVDVFSPNLEEAARLLGL 197 (328)
T ss_pred EEECCHHH--HHHHHHHHHHHHHhhccccCCccEEEEecCCccc-----ChhhHHHHHHHhccCCEECCCHHHHHHHhCC
Confidence 99864311 22678888999988 88999999874311 1122456789999999999999999999986
Q ss_pred CC-----HHHHH-----HHH---HHcCCCccEEEEEeCCCcEEEEE--CCeeEEecCccc---cccCCCCchHHHHHHHH
Q 011562 312 RN-----PITAG-----QEL---LRKGLRTKWVVVKMGPRGSILVT--KSSISCAPAFKV---NVTDTVGCGDSFVAAVA 373 (483)
Q Consensus 312 ~~-----~~~~~-----~~l---~~~g~~~~~vVvT~G~~G~~~~~--~~~~~~vpa~~v---~vvDttGAGDaF~Ag~l 373 (483)
.+ ..+.. ..+ ...+. +.||||+|++|+++++ ++..+++|++++ +++|||||||+|+|||+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~vvvt~G~~Ga~~~~~~~~~~~~~p~~~v~~~~vvDttGAGDaF~agfl 275 (328)
T cd01943 198 PTSEPSSDEEKEAVLQALLFSGILQDPG--GGVVLRCGKLGCYVGSADSGPELWLPAYHTKSTKVVDPTGGGNSFLGGFA 275 (328)
T ss_pred CCCCccchhhhhhhHHHHHHHhhhccCC--CEEEEEeCCCCCEEEecCCCceEecCCccCCCCcccCCCCchHHHHHHHH
Confidence 53 11111 111 33444 7899999999999998 456788999988 99999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHhcccCC
Q 011562 374 FGFIHNMPTVNTLTIANAVGAATAMGCGA 402 (483)
Q Consensus 374 ~gl~~g~~l~~al~~A~aaAa~~v~~~G~ 402 (483)
++|++|+++++|+++|+++|++++++.|.
T Consensus 276 ~~l~~g~~~~~al~~a~a~Aa~~v~~~G~ 304 (328)
T cd01943 276 AGLALTKSIDEACIYGSVAASFAIEQVGL 304 (328)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999993
No 43
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1e-33 Score=277.73 Aligned_cols=266 Identities=20% Similarity=0.300 Sum_probs=203.8
Q ss_pred EEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHHH
Q 011562 84 VATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDV 163 (483)
Q Consensus 84 VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~~ 163 (483)
|+|+|++++|++-. +.. ......||++.|+|.+++||| ++.++|.+|+| +|+.+++.
T Consensus 2 v~~~G~~~~D~~~~----~~~-----------------~~~~~~GG~a~N~a~~la~lg-~v~~i~~vG~D-~g~~~~~~ 58 (277)
T cd01946 2 LLVVGSVAFDAIET----PFG-----------------KVDKALGGSATYFSLSASYFT-DVRLVGVVGED-FPEEDYKL 58 (277)
T ss_pred eEEEEEeeeeeecC----CCc-----------------eeeeccCchHHHHHHHHHHhc-cceeEEeccCc-ChHHHHHH
Confidence 89999999999921 110 112345888999999999998 69999999999 89999999
Q ss_pred HHHcCCCccceeecCCCCccccCcccceeEEE--EECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEec
Q 011562 164 LQDEGIGMVGMSEDTDGVDTSSASYETLLCWV--LVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNG 241 (483)
Q Consensus 164 L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v--~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG 241 (483)
|+++||+++++.+.++.. |..... ..+.+++..... .......+.+.+...+.+++++|+++
T Consensus 59 l~~~gi~~~~v~~~~~~~--------t~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~ 122 (277)
T cd01946 59 LNSHNIVTLGLLSKEDGK--------TFHWAGRYHYDLNEADTLDT--------DLNVFADFDPQLPEHYKDSEFVFLGN 122 (277)
T ss_pred HHhccCcceeEEEecCCC--------eEEEeeEehhhcccccchhh--------hhhHHhhcCCCChHHhhcCCEEEECC
Confidence 999999999998755432 211000 001111111110 00001111111234568899999974
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHHHHHHHH
Q 011562 242 YGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQEL 321 (483)
Q Consensus 242 ~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~~l 321 (483)
++++...++++.+++. .++++|+.. +|. ....+.++++++++|++++|++|++.+++..+..++++.+
T Consensus 123 -----~~~~~~~~~~~~~~~~-~~v~~D~~~----~~~--~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~~~~~~~l 190 (277)
T cd01946 123 -----IAPELQREVLEQVKDP-KLVVMDTMN----FWI--SIKPEKLKKVLAKVDVVIINDGEARQLTGAANLVKAARLI 190 (277)
T ss_pred -----CCHHHHHHHHHHHHhC-CEEEEccHH----Hhh--hhhHHHHHHHhccCCEEeCCHHHHHHHhCCchHHHHHHHH
Confidence 4567788888888877 889999842 232 1235567889999999999999999999988888889999
Q ss_pred HHcCCCccEEEEEeCCCcEEEEECCeeEEecCcccc-ccCCCCchHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHH
Q 011562 322 LRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVN-VTDTVGCGDSFVAAVAFGFIHNM-----PTVNTLTIANAVGAA 395 (483)
Q Consensus 322 ~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~-vvDttGAGDaF~Ag~l~gl~~g~-----~l~~al~~A~aaAa~ 395 (483)
++.|+ +.||+|+|.+|++++++++.+++|+++++ ++|||||||+|+|||+++|.+|+ ++++|+++|+++|++
T Consensus 191 ~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~vDttGAGDaF~Agfl~~l~~~~~~~~~~~~~a~~~a~~~aa~ 268 (277)
T cd01946 191 LAMGP--KALIIKRGEYGALLFTDDGYFAAPAYPLESVFDPTGAGDTFAGGFIGYLASQKDTSEANMRRAIIYGSAMASF 268 (277)
T ss_pred HHcCC--CEEEEecCCCcEEEEECCceEEcCCcccCccCCCCCchHHHHHHHHHHHHhCCCcchhhHHHHHHHhHHHHhh
Confidence 98876 78999999999999998888899998885 89999999999999999999884 699999999999999
Q ss_pred HhcccCC
Q 011562 396 TAMGCGA 402 (483)
Q Consensus 396 ~v~~~G~ 402 (483)
+|++.|+
T Consensus 269 ~~~~~G~ 275 (277)
T cd01946 269 CVEDFGT 275 (277)
T ss_pred hhhhcCC
Confidence 9999985
No 44
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=6.6e-33 Score=277.00 Aligned_cols=277 Identities=17% Similarity=0.196 Sum_probs=209.7
Q ss_pred CCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHH
Q 011562 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (483)
Q Consensus 80 ~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~ 159 (483)
..++|+|+|++++|+++.+.. . .....||+++|+|.+++|||.++.++|.+|+|..
T Consensus 10 ~~~~vlvvG~~~~D~i~~~g~------~---------------~~~~~GG~a~N~A~alarLG~~~~lis~VG~D~~--- 65 (335)
T PLN02630 10 PQRRVLIVGNYCHDVLIQNGS------V---------------TAESLGGAASFISNVLDALSVECELVSKVGPDFL--- 65 (335)
T ss_pred CCCCEEEEeeeeeeEEEeCCc------E---------------EEEecCcHHHHHHHHHHHcCCceEEEEEecCCcc---
Confidence 467899999999999987411 0 1234588899999999999999999999999942
Q ss_pred HHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECC-----CCCcccccccCCCCChhhhhhhhccHHHHHhhcCC
Q 011562 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDP-----SQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHS 234 (483)
Q Consensus 160 i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~-----~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 234 (483)
.+|+...+.. ++ ..|+.+++++++ ++++.++...........+.+ ... .+..+
T Consensus 66 -------~~v~~~~~~~-~~--------~~T~~~~~~~~~g~~~~~~e~~i~~~~ga~~~l~~~di---~~~---~~~~~ 123 (335)
T PLN02630 66 -------YQVSHPPIVI-PD--------SKTTEFHADFDQGIDGNGHEDRVLKRVCACDPIEPSDI---PDM---RYEFG 123 (335)
T ss_pred -------ccccccceec-CC--------CCceEEEEEEcCCcccCCCCeEEEEeccccCCCChHHC---CHH---Hhccc
Confidence 3677655433 22 247888887776 456665544333322222211 111 35667
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHH-----cCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhh
Q 011562 235 KVLFCNGYGFDELSPALIISALEYAAQ-----VGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLT 309 (483)
Q Consensus 235 ~~v~isG~~~~~~~~~~~~~li~~a~~-----~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~ 309 (483)
+++++.+ +++++...++++.++. +|+.+++|+++....+|... ...+.++++++|++++|++|+..+
T Consensus 124 ~~~~l~~----ei~~e~~~~~~~~a~~v~~D~~g~~~~~Dp~~~~~~~~~~~---~~~~~~~L~~iDil~~ne~Ea~~l- 195 (335)
T PLN02630 124 MAVGVAG----EILPETLERMVEICDVVVVDIQALIRVFDPVDGTVKLVKLE---ETGFYDMLPRIGFLKASSEEALFI- 195 (335)
T ss_pred ceeeecC----CCcHHHHHHHHHHhhhheeccCceEEecCCcccccccchhh---HHHHHHHHHhCCEEEecHHHHhhc-
Confidence 8888874 5567888899999988 78999999976321122111 123678999999999999999986
Q ss_pred CCCCHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHH
Q 011562 310 GLRNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIA 389 (483)
Q Consensus 310 g~~~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A 389 (483)
+.+++ .+. ..||||+|++|++++++++.+++|+++++++|||||||+|+|||++++++|+++++|+++|
T Consensus 196 ---~~~~~----~~~----~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~vDttGAGDaF~agfi~~l~~g~~~~~a~~~A 264 (335)
T PLN02630 196 ---DVEEV----RQK----CCVIVTNGKKGCRIYWKDGEMRVPPFPAIQVDPTGAGDSFLGGFVAGLVQGLAVPDAALLG 264 (335)
T ss_pred ---CHHHH----ccC----CEEEEEECCCceEEEECCeeEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 33332 222 4699999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCCHHHHHHHHHhcCCCc
Q 011562 390 NAVGAATAMGCGAGRNVATLERVIELMRASNLNE 423 (483)
Q Consensus 390 ~aaAa~~v~~~G~~~~~p~~~ev~~~l~~~~~~~ 423 (483)
+++|++++++.|. ...++++++++++++++++
T Consensus 265 ~a~aa~~v~~~G~--~~~~~~~l~~~~~~i~i~~ 296 (335)
T PLN02630 265 NYFGSLAVEQVGI--PKFDLRQLQRVKDEVQRRK 296 (335)
T ss_pred HHHHHHHhCcCCC--CCCCHHHHHHHhhcEEEEE
Confidence 9999999999984 4569999999999887643
No 45
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8e-33 Score=267.54 Aligned_cols=293 Identities=23% Similarity=0.297 Sum_probs=231.3
Q ss_pred CCCCccEEEECCceeEEEecC------CCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEe
Q 011562 78 GVKSIDVATLGNLCVDIVLNV------PQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHV 151 (483)
Q Consensus 78 ~~~~~~VlviG~~~iD~~~~v------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~v 151 (483)
..++.+|+|+|++++|.|++. |+-|.|-..+ .......||++|||.+++.||.++.++|.+
T Consensus 7 ~f~~~kVLVvGDvmLDrY~~G~~~RISPEAPVPVv~v-------------~~e~~rlGGAaNVa~NiasLGa~a~l~Gvv 73 (467)
T COG2870 7 NFKQAKVLVVGDVMLDRYWYGKVSRISPEAPVPVVKV-------------EKEEERLGGAANVAKNIASLGANAYLVGVV 73 (467)
T ss_pred hhcCCcEEEEcceeeeeeccccccccCCCCCCceEEe-------------cccccccccHHHHHHHHHHcCCCEEEEEee
Confidence 346788999999999999983 3333332211 223334688999999999999999999999
Q ss_pred cCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhh
Q 011562 152 GNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAI 231 (483)
Q Consensus 152 G~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 231 (483)
|.|+.|+.+...|...+|+..++ .+++++ |..-..++..+. ..-|.+++..........+.+.+...+
T Consensus 74 G~Deag~~L~~~l~~~~i~~~l~-~~~~r~--------T~~K~Rv~s~nQ---QllRvD~Ee~~~~~~~~~ll~~~~~~l 141 (467)
T COG2870 74 GKDEAGKALIELLKANGIDSDLL-RDKNRP--------TIVKLRVLSRNQ---QLLRLDFEEKFPIEDENKLLEKIKNAL 141 (467)
T ss_pred ccchhHHHHHHHHHhcCcccceE-eecCCC--------ceeeeeeecccc---eEEEecccccCcchhHHHHHHHHHHHh
Confidence 99999999999999999996555 455544 333333333322 222333332222223345556777889
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCC
Q 011562 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL 311 (483)
Q Consensus 232 ~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~ 311 (483)
.+.+.+++|.|..+.+.. +..+++.|+++|++|.+||.+.. .+.+..+.+++||..|+++..|.
T Consensus 142 ~~~~~vVLSDY~KG~L~~--~q~~I~~ar~~~~pVLvDPKg~D--------------f~~Y~GAtLiTPN~~E~~~~vg~ 205 (467)
T COG2870 142 KSFDALVLSDYAKGVLTN--VQKMIDLAREAGIPVLVDPKGKD--------------FEKYRGATLITPNLKEFEEAVGK 205 (467)
T ss_pred hcCCEEEEeccccccchh--HHHHHHHHHHcCCcEEECCCCcc--------------hhhhCCCeecCCCHHHHHHHHcc
Confidence 999999999999777665 78999999999999999997643 15678899999999999999886
Q ss_pred C----CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHH
Q 011562 312 R----NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLT 387 (483)
Q Consensus 312 ~----~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~ 387 (483)
. +..+.++.|.+. .+...++||++++|..++..++..|+|+...++.|.|||||+-+|.|+++++.|.++++|+.
T Consensus 206 ~~~e~el~~~g~kL~~~-~~L~alLvTRsE~GMtL~~~~~~~h~pt~AkEVyDVTGAGDTVIa~la~~laaG~s~~eAc~ 284 (467)
T COG2870 206 CKSEEELEERGQKLKEE-LDLSALLVTRSEKGMTLFQEGKPLHFPARAKEVYDVTGAGDTVIAVLAAALAAGASLEEACE 284 (467)
T ss_pred cccHHHHHHHHHHHHHh-hCcceEEEEeccCCceeecCCcccccchhheeeeeccCCCchHHHHHHHHHHcCCCHHHHHH
Confidence 4 245556777765 45578999999999999999888999999889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCCCCCCHHHHHH
Q 011562 388 IANAVGAATAMGCGAGRNVATLERVIE 414 (483)
Q Consensus 388 ~A~aaAa~~v~~~G~~~~~p~~~ev~~ 414 (483)
+||+||+..+...|+ ...+.+|+..
T Consensus 285 lAN~AagiVVgKlGT--atvs~~EL~n 309 (467)
T COG2870 285 LANAAAGIVVGKLGT--ATVSPEELEM 309 (467)
T ss_pred HhhhhcceEEeeccc--eeecHHHHHh
Confidence 999999999999995 4778899887
No 46
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=9.5e-33 Score=267.40 Aligned_cols=254 Identities=19% Similarity=0.211 Sum_probs=192.6
Q ss_pred cEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHH
Q 011562 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (483)
Q Consensus 83 ~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~ 162 (483)
+|+++|++++|++...+ .....+||++.|+|.+|++||.++.++|.+|+|..|+ ++
T Consensus 1 ~il~iG~~~iD~~~~~~----------------------~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~g~--~~ 56 (254)
T cd01937 1 KIVIIGHVTIDEIVTNG----------------------SGVVKPGGPATYASLTLSRLGLTVKLVTKVGRDYPDK--WS 56 (254)
T ss_pred CeEEEcceeEEEEecCC----------------------ceEEecCchhhhHHHHHHHhCCCeEEEEeeCCCchHH--HH
Confidence 58999999999997521 1234568989999999999999999999999999998 68
Q ss_pred HHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecC
Q 011562 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (483)
Q Consensus 163 ~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~ 242 (483)
.|++.||++..+ ... .|+.+++.++.++++.+........ . + ... ...+.++|++|++++
T Consensus 57 ~l~~~gv~~~~~--~~~---------~t~~~~~~~~~~~~~~~~~~~~~~~--~--~-~~~----~~~~~~~~~~~~~~~ 116 (254)
T cd01937 57 DLFDNGIEVISL--LST---------ETTTFELNYTNEGRTRTLLAKCAAI--P--D-TES----PLSTITAEIVILGPV 116 (254)
T ss_pred HHHHCCcEEEEe--cCC---------CeEEEEEEecCCCCeeeeeccccCC--c--c-ccc----ccccCcccEEEECCC
Confidence 899999996433 111 2455555566666665543222111 0 0 000 123678999999753
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHHHHHHHHH
Q 011562 243 GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQELL 322 (483)
Q Consensus 243 ~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~~l~ 322 (483)
+.+....+.+.+ .+|++|+++....+. .....+.++++++|++++|++|+..+ .+..++++.+.
T Consensus 117 -----~~~~~~~~~~~~----~~v~~D~~~~~~~~~----~~~~~~~~~l~~~di~~~n~~E~~~~---~~~~~~~~~l~ 180 (254)
T cd01937 117 -----PEEISPSLFRKF----AFISLDAQGFLRRAN----QEKLIKCVILKLHDVLKLSRVEAEVI---STPTELARLIK 180 (254)
T ss_pred -----cchhcHHHHhhh----hheeEccccceeecc----ccchHHHhhcccCcEEEEcHHHHhhc---CCHHHHHHHHH
Confidence 333333443332 789999985422111 11223578999999999999999983 46778888888
Q ss_pred HcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Q 011562 323 RKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAM 398 (483)
Q Consensus 323 ~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~ 398 (483)
+.|+ +.||||+|++|++++++++.+++++++++++||+||||+|+|||++++.+|+++++|+++|+++|+.+++
T Consensus 181 ~~g~--~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~~a~~~aa~~i~ 254 (254)
T cd01937 181 ETGV--KEIIVTDGEEGGYIFDGNGKYTIPASKKDVVDPTGAGDVFLAAFLYSRLSGKDIKEAAEFAAAAAAKFIE 254 (254)
T ss_pred HcCC--CEEEEeeCCcceEEEECCccEEccccCceeccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 8776 7899999999999999988889999999999999999999999999999999999999999999999874
No 47
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-31 Score=251.05 Aligned_cols=300 Identities=19% Similarity=0.259 Sum_probs=226.9
Q ss_pred EEEECCceeEEEecCCC-----CCCCC-------hhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCC---ceEEE
Q 011562 84 VATLGNLCVDIVLNVPQ-----LPPPS-------RDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGL---DCVTI 148 (483)
Q Consensus 84 VlviG~~~iD~~~~v~~-----~p~~~-------~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~---~v~li 148 (483)
.+.+|++.+|+...|+. ++... ++....+-+-+. . ...++.+||++-|+++++++++. .+.++
T Consensus 9 l~G~gnpLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~-~-~~~~~~AGGs~qNt~R~aq~~~~~p~~~~f~ 86 (343)
T KOG2854|consen 9 LVGLGNPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELME-G-FNVKYSAGGSAQNTLRIAQWLLQQPGATVFF 86 (343)
T ss_pred eeccCccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhh-c-ccEEecCCchhHHHHHHHHHHccCCCceEEE
Confidence 55689999999998754 22111 111111111111 1 25677778889999999999987 89999
Q ss_pred EEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHH
Q 011562 149 GHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVK 228 (483)
Q Consensus 149 g~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (483)
|.||.|.+|+++.+.+++.||+..+....+ .+|+.|.++++.+. |+++..-.....-..+++. .++.+
T Consensus 87 GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d---------~~TGtCavli~~~n-RSL~anLgAAn~f~~dhl~--~~~~~ 154 (343)
T KOG2854|consen 87 GSVGKDKFGELLKSKARAAGVNVHYQVKED---------GPTGTCAVLITGDN-RSLCANLGAANCFKVDHLD--KEENW 154 (343)
T ss_pred eeccCchHHHHHHHHHHhcCceEEEEeccC---------CCCceEEEEEeCCC-cchhhccchhhccCHHHhc--chhhh
Confidence 999999999999999999999998774433 35999999999877 6665433332222222221 24466
Q ss_pred HhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHh
Q 011562 229 TAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESL 308 (483)
Q Consensus 229 ~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l 308 (483)
..++++.++++.|+++ ...++.+..+.+.|.+.+.+..++.+.. ......++.+...++++|+++.|++|++++
T Consensus 155 ~lveka~v~yv~Gffl-tv~p~ai~~v~qh~~e~~r~~~lnlsap-----fI~q~~~~~l~~v~~y~DiifgNe~EA~af 228 (343)
T KOG2854|consen 155 ALVEKAKVFYVAGFFL-TVSPDAIRKVAQHAAENNRVFTLNLSAP-----FISQFFKDALDKVLPYADIIFGNEDEAAAF 228 (343)
T ss_pred hhhhheeEEEEEEEEE-EeChHHHHHHHHHHHHhcchhheeccch-----hHHHHHHHHHHhhcCcceEEEcCHHHHHHH
Confidence 7889999999999987 4557889999999999888777766421 123456778899999999999999999998
Q ss_pred hCCC-----CHHHHHHHHHH---c-CCCccEEEEEeCCCcEEEEECCeeEEecCccc---cccCCCCchHHHHHHHHHHH
Q 011562 309 TGLR-----NPITAGQELLR---K-GLRTKWVVVKMGPRGSILVTKSSISCAPAFKV---NVTDTVGCGDSFVAAVAFGF 376 (483)
Q Consensus 309 ~g~~-----~~~~~~~~l~~---~-g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v---~vvDttGAGDaF~Ag~l~gl 376 (483)
+... +..+.+..+.. . +.+.++++||.|.+++++..++....+|..+. +++||+||||+|++||+++|
T Consensus 229 ~~~~~~~t~dv~eia~~~~~~~k~~~~~~r~vvit~g~~~~i~~~~~~v~~~~v~~~~~~~ivDtnGAGDaFvgGFl~~l 308 (343)
T KOG2854|consen 229 ARAHGWETKDVKEIALKLSALPKVNGTRPRTVVITQGPDPVIVAEDGKVTAYPVLPLPVEEIVDTNGAGDAFVGGFLSQL 308 (343)
T ss_pred HHhhCCcccchHHHhhHhhccccccccccceEEEccCCCceEEecCCceEEeccccccceeeeeCCCchHHHHHHHHHHH
Confidence 7533 44444433332 2 24568899999999999999887666555543 69999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHHHHhcccCCC
Q 011562 377 IHNMPTVNTLTIANAVGAATAMGCGAG 403 (483)
Q Consensus 377 ~~g~~l~~al~~A~aaAa~~v~~~G~~ 403 (483)
.+|+++++|++.|+.+|+..++..|+.
T Consensus 309 ~qg~~l~~cir~g~~aa~~vi~~~G~~ 335 (343)
T KOG2854|consen 309 VQGKSLEECIRAGSYAASHVIRRVGCT 335 (343)
T ss_pred HcCCCHHHHHHHHHHHhhheeeccCCC
Confidence 999999999999999999999999964
No 48
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.1e-27 Score=216.78 Aligned_cols=280 Identities=19% Similarity=0.259 Sum_probs=213.6
Q ss_pred CccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHH
Q 011562 81 SIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (483)
Q Consensus 81 ~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i 160 (483)
+..|+|+|.+.+|++..++.+|.++...|.. +...+.||.+.|++.++..||.++.|+|.+.....-+++
T Consensus 4 ~k~VLcVG~~~lD~iTivd~~~fe~~~~r~~----------~g~wqRgG~asNvcTvlrlLG~~cef~Gvlsr~~~f~~l 73 (308)
T KOG2947|consen 4 PKQVLCVGCTVLDVITIVDKYPFEDSEIRCL----------SGRWQRGGNASNVCTVLRLLGAPCEFFGVLSRGHVFRFL 73 (308)
T ss_pred cceEEEeccEEEEEEEeccCCCCCccceehh----------hhhhhcCCCcchHHHHHHHhCCchheeeecccchhHHHH
Confidence 3569999999999999999999988766532 334556888999999999999999999999988899999
Q ss_pred HHHHHHcCCCccceeecCCCCccccCcccceeEEEEEC-CCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEE
Q 011562 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVD-PSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (483)
Q Consensus 161 ~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~i 239 (483)
++.|++.|||+++....+..+ ..+.|+++ ..|.++++.......+..+..+.++ .+.+..|+|+
T Consensus 74 Lddl~~rgIdishcpftd~~p---------p~ssiI~~r~s~trTil~~dks~p~vT~~dF~kv------dl~qy~Wihf 138 (308)
T KOG2947|consen 74 LDDLRRRGIDISHCPFTDHSP---------PFSSIIINRNSGTRTILYCDKSLPDVTATDFEKV------DLTQYGWIHF 138 (308)
T ss_pred HHHHHhcCCCcccCccccCCC---------CcceEEEecCCCceEEEEecCCCccccHHHhhhc------ccceeeeEEE
Confidence 999999999999987665432 22334454 4477888766544433333322222 3678999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHH--------cCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCC
Q 011562 240 NGYGFDELSPALIISALEYAAQ--------VGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL 311 (483)
Q Consensus 240 sG~~~~~~~~~~~~~li~~a~~--------~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~ 311 (483)
.+.. +.+ ..++++...+ .++.|++|... .++.+..+...+|+++.+.+-++.+ |.
T Consensus 139 E~Rn----p~e-tlkM~~~I~~~N~r~pe~qrI~vSvd~en-----------~req~~~l~am~DyVf~sK~~a~~~-gf 201 (308)
T KOG2947|consen 139 EARN----PSE-TLKMLQRIDAHNTRQPEEQRIRVSVDVEN-----------PREQLFQLFAMCDYVFVSKDVAKHL-GF 201 (308)
T ss_pred ecCC----hHH-HHHHHHHHHHhhcCCCccceEEEEEEecC-----------cHHHHHHHhhcccEEEEEHHHHhhh-cc
Confidence 9643 222 2333333222 44678888732 2566778999999999998887775 77
Q ss_pred CCHHHHHHHHHHc---CCCccEEEEEeCCCcEEEEEC-CeeEEecCccc-cccCCCCchHHHHHHHHHH-HHcCCCHHHH
Q 011562 312 RNPITAGQELLRK---GLRTKWVVVKMGPRGSILVTK-SSISCAPAFKV-NVTDTVGCGDSFVAAVAFG-FIHNMPTVNT 385 (483)
Q Consensus 312 ~~~~~~~~~l~~~---g~~~~~vVvT~G~~G~~~~~~-~~~~~vpa~~v-~vvDttGAGDaF~Ag~l~g-l~~g~~l~~a 385 (483)
.++.++.+.+..+ |..-..+|+.++++|+-.... ++.+++++++. ++||+.||||+|.|||+|+ +..+.++.||
T Consensus 202 ks~rea~~~l~~r~~~~~pkpv~I~~w~~eGA~~l~adg~yfev~a~~ppkvVD~lg~~DtF~A~vIyA~lk~~r~l~eA 281 (308)
T KOG2947|consen 202 KSPREACEGLYGRVPKGKPKPVLICPWASEGAGALGADGKYFEVDAFKPPKVVDTLGAGDTFNAGVIYALLKQGRSLAEA 281 (308)
T ss_pred CCHHHHHHHHHhhcccCCCCcEEEeccccccccccCCCCCEEecCCCCCccceeeccCCCcchHHHHHHHHHhhhhHHHH
Confidence 7888888887653 222256889999999877765 45778998865 8999999999999999999 5779999999
Q ss_pred HHHHHHHHHHHhcccCC
Q 011562 386 LTIANAVGAATAMGCGA 402 (483)
Q Consensus 386 l~~A~aaAa~~v~~~G~ 402 (483)
+.||+++|+.++...|-
T Consensus 282 vdfg~rvas~Kl~g~Gf 298 (308)
T KOG2947|consen 282 VDFGNRVASKKLGGQGF 298 (308)
T ss_pred HHHHHHhhhcccccccc
Confidence 99999999999988874
No 49
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.96 E-value=2.5e-27 Score=219.85 Aligned_cols=190 Identities=39% Similarity=0.616 Sum_probs=157.6
Q ss_pred cEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHH
Q 011562 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (483)
Q Consensus 83 ~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~ 162 (483)
+|+++|++++|.++.++++|.+++..+. .......||++.|+|.++++||.++.++|
T Consensus 1 ~v~~iG~~~~D~~~~~~~~~~~~~~~~~----------~~~~~~~GG~~~n~a~~l~~LG~~~~~~~------------- 57 (196)
T cd00287 1 RVLVVGSLLVDVILRVDALPLPGGLVRP----------GDTEERAGGGAANVAVALARLGVSVTLVG------------- 57 (196)
T ss_pred CEEEEccceEEEEEEeccCCCCCCeEEe----------ceeeecCCCcHHHHHHHHHHCCCcEEEEE-------------
Confidence 4899999999999999999988765432 24456678889999999999999999999
Q ss_pred HHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecC
Q 011562 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (483)
Q Consensus 163 ~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~ 242 (483)
+|++|++++
T Consensus 58 -----------------------------------------------------------------------~~~v~i~~~ 66 (196)
T cd00287 58 -----------------------------------------------------------------------ADAVVISGL 66 (196)
T ss_pred -----------------------------------------------------------------------ccEEEEecc
Confidence 567888765
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCC-----HHHH
Q 011562 243 GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRN-----PITA 317 (483)
Q Consensus 243 ~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~-----~~~~ 317 (483)
.+. .+.+.++++.+++.|+++++|+++....+. .+.+.++++++|++++|++|++.+++... ..++
T Consensus 67 ~~~---~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~------~~~~~~~~~~~dvl~~n~~E~~~l~~~~~~~~~~~~~~ 137 (196)
T cd00287 67 SPA---PEAVLDALEEARRRGVPVVLDPGPRAVRLD------GEELEKLLPGVDILTPNEEEAEALTGRRDLEVKEAAEA 137 (196)
T ss_pred cCc---HHHHHHHHHHHHHcCCeEEEeCCccccccc------cchHHHHHhhCCEECCCHHHHHHHhCCCCCChHHHHHH
Confidence 433 467888999999999999999987643211 11256788999999999999999998643 2367
Q ss_pred HHHHHHcCCCccEEEEEeCCCcEEEEE-CCeeEEecCccccccCCCCchHHHHHHHHHHHH
Q 011562 318 GQELLRKGLRTKWVVVKMGPRGSILVT-KSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFI 377 (483)
Q Consensus 318 ~~~l~~~g~~~~~vVvT~G~~G~~~~~-~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~ 377 (483)
++.+++.+. +.+|+|+|++|+++++ ++..+++|+++++++||+||||+|+|||++++.
T Consensus 138 ~~~l~~~g~--~~vvvt~G~~g~~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 138 AALLLSKGP--KVVIVTLGEKGAIVATRGGTEVHVPAFPVKVVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred HHHHHhcCC--CEEEEEECCCccEEEecCCceEEcCCccCCcccCCCchHHHHHHHHHHhC
Confidence 788888876 7899999999999999 777888998888999999999999999999873
No 50
>PRK05756 pyridoxamine kinase; Validated
Probab=99.81 E-value=2e-18 Score=170.03 Aligned_cols=165 Identities=20% Similarity=0.182 Sum_probs=130.7
Q ss_pred hcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcC--CeEEEcCCCCCCC--CCCCChHHHHHH-HhhhcCCCEEEcCHHHH
Q 011562 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVG--TSIFFDPGPRGKS--LSSGTPEEQRAL-SYFLSTSDVLLLTSDEA 305 (483)
Q Consensus 231 l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g--~~v~~D~~~~~~~--l~~~~~~~~~~l-~~ll~~~dil~~N~~Ea 305 (483)
+...+++ ++||.......+.+.++++.+++.+ +.+++||...... .+ ..++..+.+ +.+++++|+++||..|+
T Consensus 72 l~~~~~v-~~G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~-~~~~~~~~~~~~ll~~adiitpN~~Ea 149 (286)
T PRK05756 72 LGECDAV-LSGYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCI-VAPGVAEFLRDRALPAADIITPNLFEL 149 (286)
T ss_pred cccCCEE-EECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEE-ECccHhHHHHHhhcccccEecCCHHHH
Confidence 4567855 8899877667788899998888766 5688999765421 12 123333333 45899999999999999
Q ss_pred HHhhCCC-----CHHHHHHHHHHcCCCccEEEEEeCCC--------cEEEEECCeeEEecCccccc-cCCCCchHHHHHH
Q 011562 306 ESLTGLR-----NPITAGQELLRKGLRTKWVVVKMGPR--------GSILVTKSSISCAPAFKVNV-TDTVGCGDSFVAA 371 (483)
Q Consensus 306 ~~l~g~~-----~~~~~~~~l~~~g~~~~~vVvT~G~~--------G~~~~~~~~~~~vpa~~v~v-vDttGAGDaF~Ag 371 (483)
+.|+|.+ +..++++.+++.|+ +.||||.|+. |++++++++.++++.+++++ +|++||||+|+|+
T Consensus 150 ~~L~g~~~~~~~~~~~~~~~l~~~g~--~~Vvvt~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~GaGD~f~a~ 227 (286)
T PRK05756 150 EWLSGRPVETLEDAVAAARALIARGP--KIVLVTSLARAGYPADRFEMLLVTADGAWHISRPLVDFMRQPVGVGDLTSAL 227 (286)
T ss_pred HHHhCCCcCCHHHHHHHHHHHHHhCC--CEEEEeccccCCCCCCcEEEEEEECCceEEEecCccCCCCCCCChHHHHHHH
Confidence 9999853 34567788888776 7899999876 57777877777788777777 7999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcc
Q 011562 372 VAFGFIHNMPTVNTLTIANAVGAATAMG 399 (483)
Q Consensus 372 ~l~gl~~g~~l~~al~~A~aaAa~~v~~ 399 (483)
|+++|++|+++++|+++|++.....++.
T Consensus 228 ~~a~l~~g~~~~~al~~A~~~~~~~i~~ 255 (286)
T PRK05756 228 FLARLLQGGSLEEALEHTTAAVYEVMAR 255 (286)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998877754
No 51
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.81 E-value=9.6e-19 Score=169.44 Aligned_cols=164 Identities=18% Similarity=0.089 Sum_probs=130.7
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHHc--CCeEEEcCCCCCC-CCCCCChHHHHHHHhhhc-CCCEEEcCHHHHHH
Q 011562 232 KHSKVLFCNGYGFDELSPALIISALEYAAQV--GTSIFFDPGPRGK-SLSSGTPEEQRALSYFLS-TSDVLLLTSDEAES 307 (483)
Q Consensus 232 ~~~~~v~isG~~~~~~~~~~~~~li~~a~~~--g~~v~~D~~~~~~-~l~~~~~~~~~~l~~ll~-~~dil~~N~~Ea~~ 307 (483)
...+++ +.|+.......+.+.++++.++++ +++|++||..... .+|...++..+.+.+++. ++|++++|..|++.
T Consensus 71 ~~~~~v-~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~~ 149 (254)
T cd01173 71 LEYDAV-LTGYLGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELEL 149 (254)
T ss_pred ccCCEE-EEecCCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHHH
Confidence 456766 678876666678889999999887 8999999974321 122233555677777777 99999999999999
Q ss_pred hhCCC-----CHHHHHHHHHHcCCCccEEEEEeCCC------cEEEEECCeeEEecCcccc-ccCCCCchHHHHHHHHHH
Q 011562 308 LTGLR-----NPITAGQELLRKGLRTKWVVVKMGPR------GSILVTKSSISCAPAFKVN-VTDTVGCGDSFVAAVAFG 375 (483)
Q Consensus 308 l~g~~-----~~~~~~~~l~~~g~~~~~vVvT~G~~------G~~~~~~~~~~~vpa~~v~-vvDttGAGDaF~Ag~l~g 375 (483)
++|.+ +..+++++|++.|+ +.|+||.|++ |++++++++.+.++.+.++ ++|++||||+|.|||+++
T Consensus 150 l~g~~~~~~~~~~~~~~~l~~~g~--~~Vvit~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~~~~~ 227 (254)
T cd01173 150 LTGKKINDLEDAKAAARALHAKGP--KTVVVTSVELADDDRIEMLGSTATEAWLVQRPKIPFPAYFNGTGDLFAALLLAR 227 (254)
T ss_pred HcCCCcCCHHHHHHHHHHHHHhCC--CEEEEEeeccCCCCcEEEEEEecCccEEEEeeccCCCCCcCChHHHHHHHHHHH
Confidence 99974 46778888988876 8899999985 8888887665555555555 799999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHHHHhc
Q 011562 376 FIHNMPTVNTLTIANAVGAATAM 398 (483)
Q Consensus 376 l~~g~~l~~al~~A~aaAa~~v~ 398 (483)
|++|+++++|+++|++.....++
T Consensus 228 l~~g~~~~~a~~~A~~~~~~~i~ 250 (254)
T cd01173 228 LLKGKSLAEALEKALNFVHEVLE 250 (254)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999998776654
No 52
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.79 E-value=6.5e-18 Score=166.48 Aligned_cols=163 Identities=18% Similarity=0.211 Sum_probs=125.4
Q ss_pred hcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcC--CeEEEcCCCCCCC--CCCCChHHHHHH-HhhhcCCCEEEcCHHHH
Q 011562 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVG--TSIFFDPGPRGKS--LSSGTPEEQRAL-SYFLSTSDVLLLTSDEA 305 (483)
Q Consensus 231 l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g--~~v~~D~~~~~~~--l~~~~~~~~~~l-~~ll~~~dil~~N~~Ea 305 (483)
+.+.|++ ++||.......+.+.++++.+++.+ +.+++||...... .+. .++..+.+ +.+++++|++++|..|+
T Consensus 72 ~~~~d~v-~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~-~~~~~~~~~~~ll~~adii~pN~~Ea 149 (286)
T TIGR00687 72 LNQCDAV-LSGYLGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYV-APDLLEVYREKAIPVADIITPNQFEL 149 (286)
T ss_pred cccCCEE-EECCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeee-ChhHHHHHHHhccccccEecCCHHHH
Confidence 4578885 7888876666778899999888765 6788999644221 111 13334444 45889999999999999
Q ss_pred HHhhCCC-----CHHHHHHHHHHcCCCccEEEEE-eCCCcE--------EEEECCeeEEecCcccc-ccCCCCchHHHHH
Q 011562 306 ESLTGLR-----NPITAGQELLRKGLRTKWVVVK-MGPRGS--------ILVTKSSISCAPAFKVN-VTDTVGCGDSFVA 370 (483)
Q Consensus 306 ~~l~g~~-----~~~~~~~~l~~~g~~~~~vVvT-~G~~G~--------~~~~~~~~~~vpa~~v~-vvDttGAGDaF~A 370 (483)
+.++|.+ +..++++.+++.|+ +.|||| .|.+|+ +++++++.++.+.++++ ++|++||||+|+|
T Consensus 150 ~~L~g~~~~~~~~~~~~~~~l~~~g~--~~Viit~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~A 227 (286)
T TIGR00687 150 ELLTGRKINTVEEALAAADALIAMGP--DIVLVTHLARAGSQRDRDFEGLVVTQEGRWHISRPLAVFMRQPVGTGDLIAA 227 (286)
T ss_pred HHHhCCCcCCHHHHHHHHHHHHHhCC--CEEEEEeccccCCCCCcceeEEEEcCCceEEEeccCcCCCCCCCChHHHHHH
Confidence 9999864 34566888888876 779999 688875 44556666777766676 6999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 011562 371 AVAFGFIHNMPTVNTLTIANAVGAATA 397 (483)
Q Consensus 371 g~l~gl~~g~~l~~al~~A~aaAa~~v 397 (483)
||++++++|+++++|+++|+++....+
T Consensus 228 ~~l~~l~~g~~~~~al~~A~~~v~~~l 254 (286)
T TIGR00687 228 LLLATLLHGNSLKEALEKTVSAVYHVL 254 (286)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999944333
No 53
>PRK07105 pyridoxamine kinase; Validated
Probab=99.76 E-value=2e-17 Score=162.78 Aligned_cols=164 Identities=15% Similarity=0.111 Sum_probs=123.8
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCC-CCCC-CChHHHHHHHhhhcCCCEEEcCHHHHHHhhC
Q 011562 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGK-SLSS-GTPEEQRALSYFLSTSDVLLLTSDEAESLTG 310 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~-~l~~-~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g 310 (483)
..|.|.+ ||....-..+.+.++++.+++.++++++||..... .+|. ..++..+.+.++++++|+++||..|++.|+|
T Consensus 75 ~~~aik~-G~l~~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g 153 (284)
T PRK07105 75 KFDAIYS-GYLGSPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLLLD 153 (284)
T ss_pred ccCEEEE-CcCCCHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHHcC
Confidence 6777764 66644333345555666556678999999985432 1222 1345566778899999999999999999998
Q ss_pred CC---------CHHHHHHHHHHcCCCccEEEEEe-----CCCcEEEEECC--eeEEecCccccccCCCCchHHHHHHHHH
Q 011562 311 LR---------NPITAGQELLRKGLRTKWVVVKM-----GPRGSILVTKS--SISCAPAFKVNVTDTVGCGDSFVAAVAF 374 (483)
Q Consensus 311 ~~---------~~~~~~~~l~~~g~~~~~vVvT~-----G~~G~~~~~~~--~~~~vpa~~v~vvDttGAGDaF~Ag~l~ 374 (483)
.+ +..++++++.+.|+ +.||||. |..|+++++++ ..++.+.+.++ +|++||||+|.|||++
T Consensus 154 ~~~~~~~~~~~~~~~~a~~l~~~g~--~~Vvvt~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~-~~~~GaGD~f~aa~~~ 230 (284)
T PRK07105 154 KPYLEKSYSEEEIKQLLRKLADLGP--KIVIITSVPFEDGKIGVAYYDRATDRFWKVFCKYIP-AHYPGTGDIFTSVITG 230 (284)
T ss_pred CCcCcCCCCHHHHHHHHHHHHhcCC--CEEEEcCeeeCCCeEEEEEEeCCCCeEEEEeecccC-CCcCChhHHHHHHHHH
Confidence 53 24467788888776 7899999 77788888753 34555554444 8999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHhccc
Q 011562 375 GFIHNMPTVNTLTIANAVGAATAMGC 400 (483)
Q Consensus 375 gl~~g~~l~~al~~A~aaAa~~v~~~ 400 (483)
++++|+++++|+++|.+++...+++-
T Consensus 231 ~l~~g~~l~~av~~A~~~~~~~i~~~ 256 (284)
T PRK07105 231 SLLQGDSLPIALDRAVQFIEKGIRAT 256 (284)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888643
No 54
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.76 E-value=2.2e-17 Score=159.80 Aligned_cols=163 Identities=20% Similarity=0.193 Sum_probs=122.7
Q ss_pred cCCcEEEEe-cCCCCCCCHHHHHHHHHHHH-HcCCeEEEcCCCCCCCCCC-CChHHHHHHHhhhcCCCEEEcCHHHHHHh
Q 011562 232 KHSKVLFCN-GYGFDELSPALIISALEYAA-QVGTSIFFDPGPRGKSLSS-GTPEEQRALSYFLSTSDVLLLTSDEAESL 308 (483)
Q Consensus 232 ~~~~~v~is-G~~~~~~~~~~~~~li~~a~-~~g~~v~~D~~~~~~~l~~-~~~~~~~~l~~ll~~~dil~~N~~Ea~~l 308 (483)
...++..+. |+.+ +.+....+++.++ ..++++++||..+...+.. ..+...+.+.++++++|+++||+.|++.|
T Consensus 67 ~~~~~~~i~~G~l~---~~~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L 143 (253)
T PRK12413 67 KDVPFSAIKIGLLP---NVEIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELL 143 (253)
T ss_pred hCCCCCEEEECCcC---CHHHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHH
Confidence 345555555 6653 2355566666665 4789999999987764321 23455666778899999999999999999
Q ss_pred hCCC-----CHHHHHHHHHHcCCCccEEEEEeCCCcE-----EEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHc
Q 011562 309 TGLR-----NPITAGQELLRKGLRTKWVVVKMGPRGS-----ILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIH 378 (483)
Q Consensus 309 ~g~~-----~~~~~~~~l~~~g~~~~~vVvT~G~~G~-----~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~ 378 (483)
+|.+ +..++++.+++.|+ +.||||.|++|. .++..++.++.+.+++..+|++||||+|.|||+++|.+
T Consensus 144 ~g~~~~~~~~~~~~a~~l~~~g~--~~Vvvt~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGDaf~a~~~~~l~~ 221 (253)
T PRK12413 144 SGKEIKTLEDMKEAAKKLYDLGA--KAVVIKGGNRLSQKKAIDLFYDGKEFVILESPVLEKNNIGAGCTFASSIASQLVK 221 (253)
T ss_pred hCcCCCCHHHHHHHHHHHHHcCC--CEEEEeCCCCCCCCcceEEEEcCCEEEEEeecccCCCCCChHHHHHHHHHHHHHc
Confidence 9964 35577888888876 889999998742 23333444455666777899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcc
Q 011562 379 NMPTVNTLTIANAVGAATAMG 399 (483)
Q Consensus 379 g~~l~~al~~A~aaAa~~v~~ 399 (483)
|+++++|+++|.++....+++
T Consensus 222 g~~l~ea~~~A~~~~~~~l~~ 242 (253)
T PRK12413 222 GKSPLEAVKNSKDFVYQAIQQ 242 (253)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999997777654
No 55
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.75 E-value=5.1e-17 Score=158.47 Aligned_cols=160 Identities=19% Similarity=0.197 Sum_probs=124.6
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHHcCCe-EEEcCCCCCCCCC-CCChHHHH-HHHhhhcCCCEEEcCHHHHHHhhC
Q 011562 234 SKVLFCNGYGFDELSPALIISALEYAAQVGTS-IFFDPGPRGKSLS-SGTPEEQR-ALSYFLSTSDVLLLTSDEAESLTG 310 (483)
Q Consensus 234 ~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~-v~~D~~~~~~~l~-~~~~~~~~-~l~~ll~~~dil~~N~~Ea~~l~g 310 (483)
.+.+.+. + -.+.+.+..+++.+++.+.+ +++||......-. ...++..+ ..+.+++++|+++||+.|++.|+|
T Consensus 73 ~~~ikiG-~---l~~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g 148 (268)
T PRK12412 73 VDALKTG-M---LGSVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQLSG 148 (268)
T ss_pred CCEEEEC-C---CCCHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHHhC
Confidence 6788775 3 34567888888888888876 9999975332110 01122223 345688999999999999999998
Q ss_pred CC-----CHHHHHHHHHHcCCCccEEEEEeCCCcE------EEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcC
Q 011562 311 LR-----NPITAGQELLRKGLRTKWVVVKMGPRGS------ILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHN 379 (483)
Q Consensus 311 ~~-----~~~~~~~~l~~~g~~~~~vVvT~G~~G~------~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g 379 (483)
.+ +..+++++|++.|+ +.|+||.|++|+ +++.++..++++.++++.+|++||||+|.|+|+++|++|
T Consensus 149 ~~~~~~~~~~~aa~~l~~~g~--~~ViIt~G~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~t~GaGD~f~aa~aa~l~~g 226 (268)
T PRK12412 149 VKINSLEDMKEAAKKIHALGA--KYVLIKGGSKLGTETAIDVLYDGETFDLLESEKIDTTNTHGAGCTYSAAITAELAKG 226 (268)
T ss_pred cCCCCHHHHHHHHHHHHhcCC--CEEEEeccCCCCCCceEEEEEeCCEEEEEEeCccCCCCCCchHHHHHHHHHHHHHCC
Confidence 63 35678888988876 889999999763 445555557788888899999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcc
Q 011562 380 MPTVNTLTIANAVGAATAMG 399 (483)
Q Consensus 380 ~~l~~al~~A~aaAa~~v~~ 399 (483)
+++++|+++|.++....+..
T Consensus 227 ~~l~eA~~~A~~~~~~~i~~ 246 (268)
T PRK12412 227 KPVKEAVKTAKEFITAAIRY 246 (268)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877754
No 56
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.75 E-value=1e-16 Score=155.27 Aligned_cols=159 Identities=19% Similarity=0.198 Sum_probs=126.1
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHHcCC-eEEEcCCCCCC---CCCCCChHHHHH-HHhhhcCCCEEEcCHHHHHH
Q 011562 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGT-SIFFDPGPRGK---SLSSGTPEEQRA-LSYFLSTSDVLLLTSDEAES 307 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~-~v~~D~~~~~~---~l~~~~~~~~~~-l~~ll~~~dil~~N~~Ea~~ 307 (483)
..+.+.+. + -.+.+.+..+++.+++++. ++++||..... .+. ..+..+. .+.+++++|+++||..|++.
T Consensus 67 ~~~aikiG-~---l~~~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~--~~~~~~~~~~~ll~~~dvitpN~~Ea~~ 140 (254)
T TIGR00097 67 PVDAAKTG-M---LASAEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLL--EEEAIEALRKRLLPLATLITPNLPEAEA 140 (254)
T ss_pred CCCEEEEC-C---cCCHHHHHHHHHHHHhcCCCcEEECCccccCCCCcCC--CHHHHHHHHHhccccccEecCCHHHHHH
Confidence 35667664 2 2356788889999998888 69999975432 121 1222233 34688999999999999999
Q ss_pred hhCCC-----CHHHHHHHHHHcCCCccEEEEEeCC----CcE-EEEECCeeEEecCccccccCCCCchHHHHHHHHHHHH
Q 011562 308 LTGLR-----NPITAGQELLRKGLRTKWVVVKMGP----RGS-ILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFI 377 (483)
Q Consensus 308 l~g~~-----~~~~~~~~l~~~g~~~~~vVvT~G~----~G~-~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~ 377 (483)
|+|.+ +..++++.|.+.|. +.|+||.|+ +|. +++++++.++++.++++++|++||||+|.|+|+++|+
T Consensus 141 L~g~~~~~~~~~~~~a~~l~~~g~--~~Vvvt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~aalaa~la 218 (254)
T TIGR00097 141 LLGTKIRTEQDMIKAAKKLRELGP--KAVLIKGGHLEGDQAVDVLFDGGEIHILKAPRIETKNTHGTGCTLSAAIAANLA 218 (254)
T ss_pred HhCCCCCCHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCceeEEEEECCeEEEEEecccCCCCCCChHHHHHHHHHHHHH
Confidence 99863 45678888888776 789999997 344 6677777788888889999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHhcc
Q 011562 378 HNMPTVNTLTIANAVGAATAMG 399 (483)
Q Consensus 378 ~g~~l~~al~~A~aaAa~~v~~ 399 (483)
+|+++++|+++|++++...+..
T Consensus 219 ~g~~l~eA~~~A~~~~~~~i~~ 240 (254)
T TIGR00097 219 KGLSLKEAVKEAKEFVTGAIRY 240 (254)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888855
No 57
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.74 E-value=2.7e-16 Score=151.11 Aligned_cols=160 Identities=21% Similarity=0.195 Sum_probs=124.5
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHHc-CCeEEEcCCCCCCCCCCC-ChHHHHH-HHhhhcCCCEEEcCHHHHHHhh
Q 011562 233 HSKVLFCNGYGFDELSPALIISALEYAAQV-GTSIFFDPGPRGKSLSSG-TPEEQRA-LSYFLSTSDVLLLTSDEAESLT 309 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~~~~~~li~~a~~~-g~~v~~D~~~~~~~l~~~-~~~~~~~-l~~ll~~~dil~~N~~Ea~~l~ 309 (483)
+.+.+.+ |+.. +.+.+..+.+.+++. +.++++||..+....... .++..+. ...+++++|+++||..|++.|+
T Consensus 68 ~~~~i~~-G~l~---~~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~ 143 (242)
T cd01169 68 PVDAIKI-GMLG---SAEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLT 143 (242)
T ss_pred CCCEEEE-CCCC---CHHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHHh
Confidence 5677777 5543 467777788887776 899999998654321111 1233333 3566799999999999999999
Q ss_pred CCC-----CHHHHHHHHHHcCCCccEEEEEeCCCc-----EEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcC
Q 011562 310 GLR-----NPITAGQELLRKGLRTKWVVVKMGPRG-----SILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHN 379 (483)
Q Consensus 310 g~~-----~~~~~~~~l~~~g~~~~~vVvT~G~~G-----~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g 379 (483)
|.+ +..++++.+.+.|. +.||||.|++| .+++++++.++++.++++++|++||||+|.|+|+++|++|
T Consensus 144 g~~~~~~~~~~~~~~~l~~~g~--~~Vvit~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~l~a~l~~g 221 (242)
T cd01169 144 GLEIATEEDMMKAAKALLALGA--KAVLIKGGHLPGDEAVDVLYDGGGFFEFESPRIDTKNTHGTGCTLSSAIAANLAKG 221 (242)
T ss_pred CCCCCCHHHHHHHHHHHHhcCC--CEEEEecCCCCCCceeEEEEECCcEEEEecceeCCCCCCChHHHHHHHHHHHHHCC
Confidence 864 24567788888776 78999999985 4667777778888888889999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 011562 380 MPTVNTLTIANAVGAATAM 398 (483)
Q Consensus 380 ~~l~~al~~A~aaAa~~v~ 398 (483)
+++++|+++|++.-...++
T Consensus 222 ~~~~~A~~~A~~~~~~~i~ 240 (242)
T cd01169 222 LSLEEAVREAKEYVTQAIR 240 (242)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999998766554
No 58
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.73 E-value=1.1e-15 Score=148.98 Aligned_cols=161 Identities=22% Similarity=0.194 Sum_probs=124.9
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHHcCC-eEEEcCCCCCCCCC-CCChHHHHHH-HhhhcCCCEEEcCHHHHHHhh
Q 011562 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGT-SIFFDPGPRGKSLS-SGTPEEQRAL-SYFLSTSDVLLLTSDEAESLT 309 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~-~v~~D~~~~~~~l~-~~~~~~~~~l-~~ll~~~dil~~N~~Ea~~l~ 309 (483)
..+.+.+ |+.. +.+.+..+++.+++.+. ++++||..+...-. ...++..+.+ +.+++++|+++||..|++.|+
T Consensus 73 ~~~ai~i-G~l~---~~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~ 148 (266)
T PRK06427 73 RIDAVKI-GMLA---SAEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLLADDAVAALRERLLPLATLITPNLPEAEALT 148 (266)
T ss_pred CCCEEEE-CCcC---CHHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhCcCeEEcCCHHHHHHHh
Confidence 4666766 4432 46777788888888775 79999975432110 0122333344 458999999999999999999
Q ss_pred CCC--C----HHHHHHHHHHcCCCccEEEEEeCC--CcE----EEEECCeeEEecCccccccCCCCchHHHHHHHHHHHH
Q 011562 310 GLR--N----PITAGQELLRKGLRTKWVVVKMGP--RGS----ILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFI 377 (483)
Q Consensus 310 g~~--~----~~~~~~~l~~~g~~~~~vVvT~G~--~G~----~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~ 377 (483)
|.+ + ..++++.|.+.|. +.||||.|+ +|. +++++++.++++.++++.+|++||||+|.|+|+++++
T Consensus 149 g~~~~~~~~~~~~~a~~l~~~g~--~~Vvit~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~l~~~l~ 226 (266)
T PRK06427 149 GLPIADTEDEMKAAARALHALGC--KAVLIKGGHLLDGEESVDWLFDGEGEERFSAPRIPTKNTHGTGCTLSAAIAAELA 226 (266)
T ss_pred CCCCCCcHHHHHHHHHHHHhcCC--CEEEEcCCCCCCCCceeEEEEeCCcEEEEEeeeECCCCCCChHHHHHHHHHHHHH
Confidence 863 1 5678888888776 789999998 553 6677776778888888889999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHhcc
Q 011562 378 HNMPTVNTLTIANAVGAATAMG 399 (483)
Q Consensus 378 ~g~~l~~al~~A~aaAa~~v~~ 399 (483)
+|+++++|+++|++++..++++
T Consensus 227 ~g~~l~~A~~~A~~~~~~~i~~ 248 (266)
T PRK06427 227 KGASLLDAVQTAKDYVTRAIRH 248 (266)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888855
No 59
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.73 E-value=5.5e-16 Score=152.14 Aligned_cols=162 Identities=22% Similarity=0.238 Sum_probs=118.3
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHH--cCCeEEEcCCCCCCC--CCCCChHHHHHHH-hhhcCCCEEEcCHHHHH
Q 011562 232 KHSKVLFCNGYGFDELSPALIISALEYAAQ--VGTSIFFDPGPRGKS--LSSGTPEEQRALS-YFLSTSDVLLLTSDEAE 306 (483)
Q Consensus 232 ~~~~~v~isG~~~~~~~~~~~~~li~~a~~--~g~~v~~D~~~~~~~--l~~~~~~~~~~l~-~ll~~~dil~~N~~Ea~ 306 (483)
.+.|.+++ ||....-..+.+.++++..+. .+.++++||...... ++ ..++..+.++ .+++++|+++||..|++
T Consensus 87 ~~~d~i~~-G~l~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~-~~~~~~~~~~~~Ll~~advitPN~~Ea~ 164 (281)
T PRK08176 87 RQLRAVTT-GYMGSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIY-VKPDLPEAYRQHLLPLAQGLTPNIFELE 164 (281)
T ss_pred ccCCEEEE-CCCCCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeE-ECccHHHHHHHHhHhhcCEeCCCHHHHH
Confidence 47788876 555433333455555555443 478899999743311 11 1233344454 58899999999999999
Q ss_pred HhhCCC-----CHHHHHHHHHHcCCCccEEEEEeCCCc-------EEEEECCeeEEecCccccccCCCCchHHHHHHHHH
Q 011562 307 SLTGLR-----NPITAGQELLRKGLRTKWVVVKMGPRG-------SILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAF 374 (483)
Q Consensus 307 ~l~g~~-----~~~~~~~~l~~~g~~~~~vVvT~G~~G-------~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~ 374 (483)
.|+|.+ +..+++++|++.|+ +.||||.|++| ++++++++.+.. ..+...+|++||||+|.|+|++
T Consensus 165 ~L~g~~~~~~~~~~~~~~~l~~~g~--~~VvIT~g~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~GaGD~faa~~~a 241 (281)
T PRK08176 165 ILTGKPCRTLDSAIAAAKSLLSDTL--KWVVITSAAGNEENQEMQVVVVTADSVNVI-SHPRVDTDLKGTGDLFCAELVS 241 (281)
T ss_pred HHhCCCCCCHHHHHHHHHHHHhcCC--CEEEEeeccCCCCCCcEEEEEEeCCceEEE-ecCccCCCCCChhHHHHHHHHH
Confidence 999863 34567888988876 88999999988 566776654433 3445567999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHhc
Q 011562 375 GFIHNMPTVNTLTIANAVGAATAM 398 (483)
Q Consensus 375 gl~~g~~l~~al~~A~aaAa~~v~ 398 (483)
++++|+++++|+++|+..-...++
T Consensus 242 ~l~~g~~l~~Av~~A~~~v~~~i~ 265 (281)
T PRK08176 242 GLLKGKALTDAAHRAGLRVLEVMR 265 (281)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999988766553
No 60
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.73 E-value=1.7e-15 Score=157.92 Aligned_cols=147 Identities=24% Similarity=0.284 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHHHcCCeEEEcCCCCCC---CCCCCChHHHHH-HHhhhcCCCEEEcCHHHHHHhhCCC-----CHHHHH
Q 011562 248 SPALIISALEYAAQVGTSIFFDPGPRGK---SLSSGTPEEQRA-LSYFLSTSDVLLLTSDEAESLTGLR-----NPITAG 318 (483)
Q Consensus 248 ~~~~~~~li~~a~~~g~~v~~D~~~~~~---~l~~~~~~~~~~-l~~ll~~~dil~~N~~Ea~~l~g~~-----~~~~~~ 318 (483)
+.+.+..+++.+++.|+++++||..+.. .++ .++..+. ...+++++|+++||..|++.|+|.+ +..+++
T Consensus 82 ~~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~--~~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~~~~d~~~aa 159 (448)
T PRK08573 82 NREIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLL--REDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIRSVEDARKAA 159 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEcCccccCCCCcCC--CHHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCCCHHHHHHHH
Confidence 4688899999999999999999976532 222 1222233 3678899999999999999999864 456777
Q ss_pred HHHHH-cCCCccEEEEEeCC----CcE-EEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011562 319 QELLR-KGLRTKWVVVKMGP----RGS-ILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAV 392 (483)
Q Consensus 319 ~~l~~-~g~~~~~vVvT~G~----~G~-~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aa 392 (483)
+.|++ .|+ +.||||.|+ +|+ +++.++..++++.++++++|++||||+|.|+|++++++|+++++|+++|+++
T Consensus 160 ~~L~~~~G~--~~VvVt~G~~~g~~~~~~~~~~~~~~~~~~~~v~~~dt~GAGDaFsAa~aa~l~~G~~l~eAl~~A~~~ 237 (448)
T PRK08573 160 KYIVEELGA--EAVVVKGGHLEGEEAVDVLYHNGTFREFRAPRVESGCTHGTGCSFSAAIAAGLAKGLDPEEAIKTAKKF 237 (448)
T ss_pred HHHHHHcCC--CEEEEecccCCCCceeEEEEECCeEEEEEecCcCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 88875 565 789999985 354 4556666778888888999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 011562 393 GAATAM 398 (483)
Q Consensus 393 Aa~~v~ 398 (483)
....++
T Consensus 238 ~~~al~ 243 (448)
T PRK08573 238 ITMAIK 243 (448)
T ss_pred HHHHHH
Confidence 988887
No 61
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.67 E-value=8.2e-15 Score=145.00 Aligned_cols=158 Identities=18% Similarity=0.131 Sum_probs=112.5
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHHcC--CeEEEcCCC--CCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhC
Q 011562 235 KVLFCNGYGFDELSPALIISALEYAAQVG--TSIFFDPGP--RGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTG 310 (483)
Q Consensus 235 ~~v~isG~~~~~~~~~~~~~li~~a~~~g--~~v~~D~~~--~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g 310 (483)
..++++||.+..-..+.+.++++.+++.+ +++++||.. ++. +| ..++..+.+..+++++|++++|+.|++.++|
T Consensus 78 ~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~-l~-~~~~~~~~~~~ll~~~dii~pN~~E~~~L~g 155 (296)
T PTZ00344 78 YTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGK-LY-VKEEVVDAYRELIPYADVITPNQFEASLLSG 155 (296)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCc-eE-eCHHHHHHHHHHhhhCCEEeCCHHHHHHHhC
Confidence 36777888764222234444444445554 579999864 322 22 2456677788899999999999999999998
Q ss_pred CC--C---HHHHHHHHHHcCCCccEEEEE---eCCCc----EEEEEC------CeeEEecCccccccCCCCchHHHHHHH
Q 011562 311 LR--N---PITAGQELLRKGLRTKWVVVK---MGPRG----SILVTK------SSISCAPAFKVNVTDTVGCGDSFVAAV 372 (483)
Q Consensus 311 ~~--~---~~~~~~~l~~~g~~~~~vVvT---~G~~G----~~~~~~------~~~~~vpa~~v~vvDttGAGDaF~Ag~ 372 (483)
.+ + ..++++.+.+.|+ +.|||| +|.+| +++... ++.+.+..++++ ++++||||+|.|+|
T Consensus 156 ~~~~~~~~~~~~~~~l~~~g~--~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~GaGD~f~A~~ 232 (296)
T PTZ00344 156 VEVKDLSDALEAIDWFHEQGI--PVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKVPYIE-GRYTGTGDLFAALL 232 (296)
T ss_pred CCCCCHHHHHHHHHHHHHhCC--CEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEeccccC-CCCCCchHHHHHHH
Confidence 63 2 4457788888766 789999 56566 444431 234556666665 57799999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhc
Q 011562 373 AFGFIHNMPTVNTLTIANAVGAATAM 398 (483)
Q Consensus 373 l~gl~~g~~l~~al~~A~aaAa~~v~ 398 (483)
++.+.+| ++++|+++|.+.-...++
T Consensus 233 ~a~l~~g-~~~~a~~~A~a~~~~~i~ 257 (296)
T PTZ00344 233 LAFSHQH-PMDLAVGKAMGVLQDIIK 257 (296)
T ss_pred HHHHhcC-CHHHHHHHHHHHHHHHHH
Confidence 9888888 999999999988766553
No 62
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.67 E-value=3.8e-15 Score=145.44 Aligned_cols=161 Identities=19% Similarity=0.173 Sum_probs=122.3
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHHcC-CeEEEcCCCCCCCC-CCCChHHHHHHH-hhhcCCCEEEcCHHHHHHhh
Q 011562 233 HSKVLFCNGYGFDELSPALIISALEYAAQVG-TSIFFDPGPRGKSL-SSGTPEEQRALS-YFLSTSDVLLLTSDEAESLT 309 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~~~~~~li~~a~~~g-~~v~~D~~~~~~~l-~~~~~~~~~~l~-~ll~~~dil~~N~~Ea~~l~ 309 (483)
..+.+.+ |+. .+.+.+..+.+.+++.+ .++++||......- ....++..+.+. .+++.+|+++||..|++.|+
T Consensus 74 ~~~aiki-G~l---~s~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L~ 149 (270)
T PRK12616 74 GVDAMKT-GML---PTVDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQLS 149 (270)
T ss_pred CCCEEEE-CCC---CCHHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHHc
Confidence 3566665 443 24567777788877776 46999997643211 001233344444 48889999999999999999
Q ss_pred CCC------CHHHHHHHHHHcCCCccEEEEEeCCCcE------EEEECCeeEEecCccccccCCCCchHHHHHHHHHHHH
Q 011562 310 GLR------NPITAGQELLRKGLRTKWVVVKMGPRGS------ILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFI 377 (483)
Q Consensus 310 g~~------~~~~~~~~l~~~g~~~~~vVvT~G~~G~------~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~ 377 (483)
|.. +..++++.+++.|+ +.||||.|++|. +++++++.+.++.++++.+|++||||+|.|+|+++|+
T Consensus 150 g~~~~~~~~~~~~aa~~l~~~G~--~~VvVt~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~GaGD~fsaalaa~l~ 227 (270)
T PRK12616 150 GMGEIKTVEQMKEAAKKIHELGA--QYVVITGGGKLKHEKAVDVLYDGETAEVLESEMIDTPYTHGAGCTFSAAVTAELA 227 (270)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC--CEEEEeCCCCCcCCceEEEEEECCeEEEEEeeeeCCCCCCcHHHHHHHHHHHHHH
Confidence 852 35677888888876 789999998862 5566666677888888899999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHhcc
Q 011562 378 HNMPTVNTLTIANAVGAATAMG 399 (483)
Q Consensus 378 ~g~~l~~al~~A~aaAa~~v~~ 399 (483)
+|+++++|+++|.+.....+..
T Consensus 228 ~g~~l~~Av~~A~~~~~~~i~~ 249 (270)
T PRK12616 228 KGSEVKEAIYAAKEFITAAIKE 249 (270)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998777754
No 63
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=99.64 E-value=6.1e-15 Score=145.12 Aligned_cols=236 Identities=21% Similarity=0.266 Sum_probs=159.7
Q ss_pred EEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHHH
Q 011562 84 VATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDV 163 (483)
Q Consensus 84 VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~~ 163 (483)
=+++|...+|....+|+-.+-+. ..++.......||-+.|.|.++++||+++.+|++||+|..|++.++.
T Consensus 343 Pv~vGa~i~D~~~k~d~d~K~dG----------~sy~~~~~Qa~GGVarN~A~a~~~lg~d~~liSavG~d~n~~~~~~~ 412 (614)
T KOG3009|consen 343 PVSVGATIVDFEAKTDEDVKDDG----------GSYNGQVVQAMGGVARNHADALARLGCDSVLISAVGDDNNGHFFRQN 412 (614)
T ss_pred ceeecceEEEeEEeecccccccC----------CcccchhhhhccchhhhHHHHHHHhcCCeeEEEEeccCCcchhhhhh
Confidence 38999999999999887332211 11222334444666999999999999999999999999433322111
Q ss_pred HHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecCC
Q 011562 164 LQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYG 243 (483)
Q Consensus 164 L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~~ 243 (483)
-. ...+...+.+ ++++++++
T Consensus 413 ~~--------------------------------------------------------~~~e~~~dl~-~a~~I~~D--- 432 (614)
T KOG3009|consen 413 SH--------------------------------------------------------KIVESNEDLL-SADFILLD--- 432 (614)
T ss_pred hh--------------------------------------------------------hhhhhhhhhh-cCCEEEEc---
Confidence 00 0001112223 78999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhh-cCCCEEEcCHHHHHHhhCCC----------
Q 011562 244 FDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFL-STSDVLLLTSDEAESLTGLR---------- 312 (483)
Q Consensus 244 ~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll-~~~dil~~N~~Ea~~l~g~~---------- 312 (483)
+++++..+.++++ ++++..+|+|+|..-. .....++-++ ..++.+.||..|+-.+....
T Consensus 433 -sNiS~~~Ma~il~-ak~~k~~V~fEPTd~~--------k~~K~fk~l~v~~i~~i~PN~~Ell~a~k~~~v~~nps~~q 502 (614)
T KOG3009|consen 433 -SNISVPVMARILE-AKKHKKQVWFEPTDID--------KVKKVFKTLLVGAITAISPNANELLKAAKLCHVSVNPSVIQ 502 (614)
T ss_pred -CCCCHHHHHHHHH-hhhccCceEecCCCch--------hhhhhhhhcceeeEEeeCCCHHHHHHHhhcCceeeChhhhc
Confidence 5889999999998 9999999999995432 2233333333 25889999999985443211
Q ss_pred ---CHHHHHHHHHHc-CCCccEEEEEeCCCcEEEEECCe-----eEEecCccc--cccCCCCchHHHHHHHHHHHHcCCC
Q 011562 313 ---NPITAGQELLRK-GLRTKWVVVKMGPRGSILVTKSS-----ISCAPAFKV--NVTDTVGCGDSFVAAVAFGFIHNMP 381 (483)
Q Consensus 313 ---~~~~~~~~l~~~-g~~~~~vVvT~G~~G~~~~~~~~-----~~~vpa~~v--~vvDttGAGDaF~Ag~l~gl~~g~~ 381 (483)
...+.++.+..+ -......|+|+.++|+++...+. ....+++.. ++++..||||+|++|++++++++.+
T Consensus 503 ~~~~~~~~~~~~~~k~~~~~s~~I~tl~~~G~l~~yr~k~g~l~~~s~~p~~~~~n~vsvsgaGdsf~~g~i~~l~~~~~ 582 (614)
T KOG3009|consen 503 TADGVLELIEKEKTKLLLNTSIFIVTLANKGSLVVYRNKLGQLEFQSLPPPLQMNNVVSVSGAGDSFNSGVIAGLAHNKT 582 (614)
T ss_pred cchHHHHHHHHHHHHhhcccceEEEEeccCceEEEecCCCCCcccccCCCcccccceeEeccCCcccccceeehhhcCcc
Confidence 122222222221 12235699999999998877653 223343333 7999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 011562 382 TVNTLTIANAVGAATAMG 399 (483)
Q Consensus 382 l~~al~~A~aaAa~~v~~ 399 (483)
+.+++.-+.+++.+..+.
T Consensus 583 v~es~~gg~~~~ralls~ 600 (614)
T KOG3009|consen 583 VVESLQGGQECARALLST 600 (614)
T ss_pred hHhhccccHHHHHHHHhc
Confidence 999999997666554433
No 64
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.59 E-value=4.7e-14 Score=149.54 Aligned_cols=166 Identities=14% Similarity=0.168 Sum_probs=120.3
Q ss_pred HHHhhcCCcEEEE-ecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCC---CCCCCC--ChHHHHHH-HhhhcCCCEEE
Q 011562 227 VKTAIKHSKVLFC-NGYGFDELSPALIISALEYAAQVGTSIFFDPGPRG---KSLSSG--TPEEQRAL-SYFLSTSDVLL 299 (483)
Q Consensus 227 ~~~~l~~~~~v~i-sG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~---~~l~~~--~~~~~~~l-~~ll~~~dil~ 299 (483)
+...+.+.++..+ .|+.. +.+.+..+++.++ +.++++||.... ..+... .++..+.+ ..+++.+|+++
T Consensus 291 l~~l~~d~~~~~Ik~G~l~---s~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advit 365 (504)
T PTZ00347 291 IDSVMSDFNISVVKLGLVP---TARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIIT 365 (504)
T ss_pred HHHHHhCCCCCEEEECCcC---CHHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEe
Confidence 3344455555444 57653 3667777777664 678999997542 122211 11112233 36889999999
Q ss_pred cCHHHHHHhhCCC------CHHHHHHHHHHcCCCccEEEEEeCCCc-------EEEEEC--CeeEEecCccccccCCCCc
Q 011562 300 LTSDEAESLTGLR------NPITAGQELLRKGLRTKWVVVKMGPRG-------SILVTK--SSISCAPAFKVNVTDTVGC 364 (483)
Q Consensus 300 ~N~~Ea~~l~g~~------~~~~~~~~l~~~g~~~~~vVvT~G~~G-------~~~~~~--~~~~~vpa~~v~vvDttGA 364 (483)
||..|++.|+|.+ +..++++.+++.|+ +.||||.|.+| .+++.+ ++.++++.++++++|++||
T Consensus 366 PN~~Ea~~L~g~~~~~~~~~~~~aa~~l~~~G~--~~VvVtgg~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~Ga 443 (504)
T PTZ00347 366 PNIPEAERILGRKEITGVYEARAAAQALAQYGS--RYVLVKGGHDLIDPEACRDVLYDREKDRFYEFTANRIATINTHGT 443 (504)
T ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC--CEEEEeCCCCCcCCCcceEEEEcCCCCeEEEEEeeeECCCCCCCh
Confidence 9999999999863 34567788888776 78999999963 344443 3467788888899999999
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Q 011562 365 GDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAMG 399 (483)
Q Consensus 365 GDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~~ 399 (483)
||+|.|+|++++++|+++++|+++|.+.-...+..
T Consensus 444 GD~fsaaiaa~la~G~~l~eAv~~A~~~v~~~i~~ 478 (504)
T PTZ00347 444 GCTLASAISSFLARGYTVPDAVERAIGYVHEAIVR 478 (504)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998886666643
No 65
>PLN02978 pyridoxal kinase
Probab=99.54 E-value=8.8e-13 Score=130.98 Aligned_cols=161 Identities=19% Similarity=0.078 Sum_probs=114.7
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHH--cCCeEEEcCCCCCC-CCCCCChHHHHHHH-hhhcCCCEEEcCHHHHHHhh
Q 011562 234 SKVLFCNGYGFDELSPALIISALEYAAQ--VGTSIFFDPGPRGK-SLSSGTPEEQRALS-YFLSTSDVLLLTSDEAESLT 309 (483)
Q Consensus 234 ~~~v~isG~~~~~~~~~~~~~li~~a~~--~g~~v~~D~~~~~~-~l~~~~~~~~~~l~-~ll~~~dil~~N~~Ea~~l~ 309 (483)
.+.+. .||.......+.+.++++.++. .++.+++||..... .++ ..++..+.+. .+++.+|+++||..|++.|+
T Consensus 87 ~~ai~-~G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~-~~~~~~~~~~~~ll~~adiitPN~~Ea~~L~ 164 (308)
T PLN02978 87 YTHLL-TGYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLY-VPPELVPVYREKVVPLATMLTPNQFEAEQLT 164 (308)
T ss_pred cCEEE-ecccCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCcc-CChhHHHHHHHHHHhhCCeeccCHHHHHHHh
Confidence 55554 4666544455777888888776 45779999986542 122 2344455564 59999999999999999999
Q ss_pred CCC-----CHHHHHHHHHHcCCCccEEEEEeCC-CcEEEEEC---------CeeEEecCccccccCCCCchHHHHHHHHH
Q 011562 310 GLR-----NPITAGQELLRKGLRTKWVVVKMGP-RGSILVTK---------SSISCAPAFKVNVTDTVGCGDSFVAAVAF 374 (483)
Q Consensus 310 g~~-----~~~~~~~~l~~~g~~~~~vVvT~G~-~G~~~~~~---------~~~~~vpa~~v~vvDttGAGDaF~Ag~l~ 374 (483)
|.+ +..++++++++.|+ +.||||-+. +|...... ++.+.+..++++.. ++|+||+|.|.+++
T Consensus 165 g~~~~~~~~~~~a~~~l~~~g~--~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~GtGD~fsA~laa 241 (308)
T PLN02978 165 GIRIVTEEDAREACAILHAAGP--SKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIVIPKIPAY-FTGTGDLMAALLLG 241 (308)
T ss_pred CCCCCCHHHHHHHHHHHHHhCC--CEEEEEEecCCCCEEEEEecccccCCCCceEEEEccCCCCC-CCCchHHHHHHHHH
Confidence 863 34577888888776 779987754 34332211 34566776666655 48999999998888
Q ss_pred HHHcC-CCHHHHHHHHHHHHHHHhcc
Q 011562 375 GFIHN-MPTVNTLTIANAVGAATAMG 399 (483)
Q Consensus 375 gl~~g-~~l~~al~~A~aaAa~~v~~ 399 (483)
.+.+| .++++|++.|.+.-...++.
T Consensus 242 ~l~~g~~~l~~A~~~A~~~v~~~i~~ 267 (308)
T PLN02978 242 WSHKYPDNLDKAAELAVSSLQAVLRR 267 (308)
T ss_pred HHhcCCcCHHHHHHHHHHHHHHHHHH
Confidence 88887 79999999998886655543
No 66
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.52 E-value=5.1e-13 Score=141.61 Aligned_cols=160 Identities=18% Similarity=0.183 Sum_probs=122.2
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHHcCCe-EEEcCCCCCCCC-CCCChHHHHHH-HhhhcCCCEEEcCHHHHHHhhC
Q 011562 234 SKVLFCNGYGFDELSPALIISALEYAAQVGTS-IFFDPGPRGKSL-SSGTPEEQRAL-SYFLSTSDVLLLTSDEAESLTG 310 (483)
Q Consensus 234 ~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~-v~~D~~~~~~~l-~~~~~~~~~~l-~~ll~~~dil~~N~~Ea~~l~g 310 (483)
.+.+.+ |+.. +.+.+..+++.+++.+.+ +++||......- ....++..+.+ +.+++++|+++||..|++.|+|
T Consensus 79 ~~aik~-G~l~---~~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea~~L~g 154 (502)
T PLN02898 79 VDVVKT-GMLP---SAEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEASALLG 154 (502)
T ss_pred CCEEEE-CCcC---CHHHHHHHHHHHHhCCCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHHHHHhC
Confidence 455554 5443 367888888888888775 999995322110 00123334444 3688999999999999999997
Q ss_pred CC------CHHHHHHHHHHcCCCccEEEEEeCCCc------EEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHc
Q 011562 311 LR------NPITAGQELLRKGLRTKWVVVKMGPRG------SILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIH 378 (483)
Q Consensus 311 ~~------~~~~~~~~l~~~g~~~~~vVvT~G~~G------~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~ 378 (483)
.. +..++++.|.+.|+ +.||||.|+.+ .++++++..++++.++++.+|++|+||+|.|+|++++++
T Consensus 155 ~~~~~~~~~~~~~a~~l~~~G~--~~VvItgg~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~t~GaGD~fsaaiaa~l~~ 232 (502)
T PLN02898 155 GDPLETVADMRSAAKELHKLGP--RYVLVKGGHLPDSLDAVDVLYDGTEFHELRSSRIKTRNTHGTGCTLASCIAAELAK 232 (502)
T ss_pred CCCCCCHHHHHHHHHHHHhcCC--CEEEEcCCCCCCCCcceEEEEcCCeEEEEecceeCCCCCCchhhhHHHHHHHHHHc
Confidence 42 35677888888776 78999999853 356666666778888888899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcc
Q 011562 379 NMPTVNTLTIANAVGAATAMG 399 (483)
Q Consensus 379 g~~l~~al~~A~aaAa~~v~~ 399 (483)
|+++++|+++|.++....+.+
T Consensus 233 G~~l~eAv~~A~~~v~~ai~~ 253 (502)
T PLN02898 233 GSDMLSAVKVAKRYVETALEY 253 (502)
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999998888865
No 67
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.49 E-value=1.4e-12 Score=143.91 Aligned_cols=190 Identities=19% Similarity=0.180 Sum_probs=134.6
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHHc-CCeEEEcCCCCCC---CCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhh
Q 011562 234 SKVLFCNGYGFDELSPALIISALEYAAQV-GTSIFFDPGPRGK---SLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLT 309 (483)
Q Consensus 234 ~~~v~isG~~~~~~~~~~~~~li~~a~~~-g~~v~~D~~~~~~---~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~ 309 (483)
.+.+-+ |+. .+.+.+..+++.+++. +.+|++||..... .+. .++..+.++++++.+|+++||..|+..|+
T Consensus 311 ~~aiKi-GmL---~s~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~--~~~~~~~l~~Llp~adlItPN~~Ea~~L~ 384 (755)
T PRK09517 311 VDAVKL-GML---GSADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLL--DADATEALRRLAVHVDVVTPNIPELAVLC 384 (755)
T ss_pred CCEEEE-CCC---CCHHHHHHHHHHHHhCCCCCEEEecccccCCCCCCC--CHHHHHHHHHHhCcccCccCCHHHHHHHh
Confidence 455655 333 2457777888888774 5779999965422 121 23444556779999999999999999999
Q ss_pred CCC------CHHHHHHHHHHcCCCccEEEEEeCC------CcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHH
Q 011562 310 GLR------NPITAGQELLRKGLRTKWVVVKMGP------RGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFI 377 (483)
Q Consensus 310 g~~------~~~~~~~~l~~~g~~~~~vVvT~G~------~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~ 377 (483)
|.. +..++++.+.+.+. ..||||.|. .|+++..++..++++.++++.+|++|+||+|.|+|+++|+
T Consensus 385 g~~~~~~~~d~~~aa~~L~~~~g--~~VVVkgGh~~~~~~~~~l~~~~~~~~~~~~~~v~~~~t~GaGDtfsaaiaa~La 462 (755)
T PRK09517 385 GEAPAITMDEAIAQARGFARTHG--TIVIVKGGHLTGDLADNAVVRPDGSVHQVENPRVNTTNSHGTGCSLSAALATLIA 462 (755)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcC--CEEEEcCCcCCCCccceEEEeCCCeEEEEeecccCCCCCcChHHHHHHHHHHHHH
Confidence 852 34456777877543 469999994 5666665555678888889999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHhccc-----CCCCCCCCHHHHHHHHHhcCCCcchhhHHHHhhh
Q 011562 378 HNMPTVNTLTIANAVGAATAMGC-----GAGRNVATLERVIELMRASNLNEDNAFWNELLDQ 434 (483)
Q Consensus 378 ~g~~l~~al~~A~aaAa~~v~~~-----G~~~~~p~~~ev~~~l~~~~~~~~~~~~~~~~~~ 434 (483)
+|+++++|+++|.+.-...+.+- |.+.+ | ...+ ..+..+.+....++|.+|+-+
T Consensus 463 ~G~sl~eAv~~A~~~v~~~i~~a~~~~~g~g~~-p-~~~~-~~~~~~~~~~~~~~~~~~~~~ 521 (755)
T PRK09517 463 AGESVEKALEWATRWLNEALRHADHLAVGSGNG-P-VDHG-HLARRLTHAAETTPWAHLRAG 521 (755)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCC-C-cchh-hhhhhcccCcccccccccccc
Confidence 99999999999999877777542 32211 2 1222 333444555555788887743
No 68
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.48 E-value=8.8e-13 Score=127.72 Aligned_cols=158 Identities=15% Similarity=0.078 Sum_probs=116.6
Q ss_pred HhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHh
Q 011562 229 TAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESL 308 (483)
Q Consensus 229 ~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l 308 (483)
..+...|++++...... .+.+..+++.+++++.++++|+.... +..... .. .+.+.+++++||..|++.|
T Consensus 73 ~~~~~~d~v~ig~gl~~---~~~~~~i~~~~~~~~~pvVlDa~~~~--~~~~~~----~~-~~~~~~~iltPn~~E~~~L 142 (254)
T cd01171 73 ELLERADAVVIGPGLGR---DEEAAEILEKALAKDKPLVLDADALN--LLADEP----SL-IKRYGPVVLTPHPGEFARL 142 (254)
T ss_pred hhhccCCEEEEecCCCC---CHHHHHHHHHHHhcCCCEEEEcHHHH--HhhcCh----hh-hccCCCEEECCCHHHHHHH
Confidence 34567899999742221 16788889999999999999986321 000000 00 2456789999999999999
Q ss_pred hCCC------CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCH
Q 011562 309 TGLR------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPT 382 (483)
Q Consensus 309 ~g~~------~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l 382 (483)
+|.. +..++++++.+++ ..+|+..| .+.+++++++.++++....+.++++|+||+|.|.+.+.+.+|+++
T Consensus 143 ~g~~~~~~~~~~~~~a~~l~~~~---~~~vvlkG-~~~~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~g~~~ 218 (254)
T cd01171 143 LGALVEEIQADRLAAAREAAAKL---GATVVLKG-AVTVIADPDGRVYVNPTGNPGLATGGSGDVLAGIIAALLAQGLSP 218 (254)
T ss_pred hCCChhhhhhHHHHHHHHHHHHc---CcEEEEcC-CCCEEECCCCcEEEECCCCcccccCchHHHHHHHHHHHHHcCCCH
Confidence 9863 2346778888875 34666667 466667665556677777789999999999988888888899999
Q ss_pred HHHHHHHHHHHHHHhccc
Q 011562 383 VNTLTIANAVGAATAMGC 400 (483)
Q Consensus 383 ~~al~~A~aaAa~~v~~~ 400 (483)
.+|+++|+.+.+.+.+..
T Consensus 219 ~eA~~~A~~~~~~a~~~~ 236 (254)
T cd01171 219 LEAAALAVYLHGLAGDLA 236 (254)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999988887643
No 69
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.43 E-value=6.2e-12 Score=134.02 Aligned_cols=153 Identities=20% Similarity=0.172 Sum_probs=110.3
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHHc-CCeEEEcCCCCC---CCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhh
Q 011562 234 SKVLFCNGYGFDELSPALIISALEYAAQV-GTSIFFDPGPRG---KSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLT 309 (483)
Q Consensus 234 ~~~v~isG~~~~~~~~~~~~~li~~a~~~-g~~v~~D~~~~~---~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~ 309 (483)
.+.+.+ |+.. +.+.+..+.+..++. +.+|++||..+. ..+. .++..+.++++++++|+++||..|++.|+
T Consensus 99 ~~aiki-G~l~---s~~~i~~v~~~l~~~~~~~vVlDPv~~~~~G~~l~--~~~~~~~~~~Ll~~advItPN~~Ea~~Lt 172 (530)
T PRK14713 99 VDAVKI-GMLG---DAEVIDAVRTWLAEHRPPVVVLDPVMVATSGDRLL--EEDAEAALRELVPRADLITPNLPELAVLL 172 (530)
T ss_pred CCEEEE-CCcC---CHHHHHHHHHHHHhCCCCCEEECCcccCCCCCCCC--CHHHHHHHHHHhhhhheecCChHHHHHHh
Confidence 466665 4442 234444444444443 346899997643 2222 34556777789999999999999999999
Q ss_pred CCC---C---HHHHHHHHHHcCCCccEEEEEeCCCc-----EEEEE-CCeeEEecCccccccCCCCchHHHHHHHHHHHH
Q 011562 310 GLR---N---PITAGQELLRKGLRTKWVVVKMGPRG-----SILVT-KSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFI 377 (483)
Q Consensus 310 g~~---~---~~~~~~~l~~~g~~~~~vVvT~G~~G-----~~~~~-~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~ 377 (483)
|.+ + ..++++++.+.+. +.||||.|..+ ..++. +++.++++.++++++|++|+||+|.|+|+++|+
T Consensus 173 g~~~~~~~~d~~~aa~~L~~~~g--~~VvItgG~~~~~~~~d~~~~~~~~~~~~~~~~v~~~~t~GaGD~fsaalaa~La 250 (530)
T PRK14713 173 GEPPATTWEEALAQARRLAAETG--TTVLVKGGHLDGQRAPDALVGPDGAVTEVPGPRVDTRNTHGTGCSLSSALATRLG 250 (530)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcC--CEEEEeCCCCCCCcceEEEEcCCCeEEEEeeeeeCCCCCCcHHHHHHHHHHHHHH
Confidence 853 2 3455777776543 57999988642 33444 444677888888999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHH
Q 011562 378 HNMPTVNTLTIANAVGA 394 (483)
Q Consensus 378 ~g~~l~~al~~A~aaAa 394 (483)
+|+++++|+++|.+.-.
T Consensus 251 ~G~~l~eAv~~A~~~v~ 267 (530)
T PRK14713 251 RGGDWAAALRWATAWLH 267 (530)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999998433
No 70
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=99.42 E-value=9.7e-12 Score=119.72 Aligned_cols=160 Identities=20% Similarity=0.198 Sum_probs=114.3
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCC-CCCCCChHHHHHHHh-hhcCCCEEEcCHHHHHHhhC
Q 011562 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGK-SLSSGTPEEQRALSY-FLSTSDVLLLTSDEAESLTG 310 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~-~l~~~~~~~~~~l~~-ll~~~dil~~N~~Ea~~l~g 310 (483)
..+.+.+ ||.. +.+.+..+.+..++.+.++++||-.... ......++..+.+.+ +++.+|++.||..|++.|+|
T Consensus 60 ~~~aiki-G~l~---~~~~v~~i~~~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~g 135 (246)
T PF08543_consen 60 KFDAIKI-GYLG---SAEQVEIIADFLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLTG 135 (246)
T ss_dssp C-SEEEE--S-S---SHHHHHHHHHHHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHHT
T ss_pred cccEEEE-cccC---CchhhhhHHHHHhccCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHhC
Confidence 5677776 4432 4566666666667788899999954211 112234555666665 99999999999999999999
Q ss_pred CC-----CHHHHHHHHHHcCCCccEEEEEeCCC----c---EEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHc
Q 011562 311 LR-----NPITAGQELLRKGLRTKWVVVKMGPR----G---SILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIH 378 (483)
Q Consensus 311 ~~-----~~~~~~~~l~~~g~~~~~vVvT~G~~----G---~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~ 378 (483)
.+ +..+++++|++.|+ +.||||-+.. + -+++.+++.+.+..+..+..+..|.||.|.|++++.|++
T Consensus 136 ~~i~~~~~~~~~~~~l~~~G~--~~VvItg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~GTGd~fss~laa~l~~ 213 (246)
T PF08543_consen 136 REINSEEDIEEAAKALLALGP--KNVVITGGHLDGDEGIITDVLYDGGEFYWLSSPRIPTGSFHGTGDLFSSALAAFLAK 213 (246)
T ss_dssp S--SSHHHHHHHHHHHHHTS---SEEEEEEEEGGSSCEEEEEEEETTSEEEEEEEEEECTSGCTTHHHHHHHHHHHHHHT
T ss_pred CCCCChHhHHHHHHHHHHhCC--ceEEEeeeccccccccccceeeeccceeecceeEEcCCCCCCchhHHHHHHHHHHHc
Confidence 43 56788999999877 8899998863 2 344455666777666666678999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc
Q 011562 379 NMPTVNTLTIANAVGAATAM 398 (483)
Q Consensus 379 g~~l~~al~~A~aaAa~~v~ 398 (483)
|+++++|++.|...-...+.
T Consensus 214 g~~l~~Av~~A~~~v~~~i~ 233 (246)
T PF08543_consen 214 GYSLEEAVEKAKNFVRRAIK 233 (246)
T ss_dssp TSSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 99999999999988666653
No 71
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.42 E-value=1.1e-11 Score=118.74 Aligned_cols=165 Identities=20% Similarity=0.154 Sum_probs=118.2
Q ss_pred cHHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcC--CCEEEcC
Q 011562 224 SAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLST--SDVLLLT 301 (483)
Q Consensus 224 ~~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~--~dil~~N 301 (483)
.+...+.++++|++++.--...+...+.+..+++.+++.++++++||..... .....+.+..++.. +|+++||
T Consensus 40 ~e~~~~~l~~~d~vvi~~G~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~-----~~~~~~~~~~ll~~~~~~ilTPN 114 (242)
T cd01170 40 PEEVEELAKIAGALVINIGTLTSEQIEAMLKAGKAANQLGKPVVLDPVGVGA-----TSFRTEVAKELLAEGQPTVIRGN 114 (242)
T ss_pred HHHHHHHHHHcCcEEEeCCCCChHHHHHHHHHHHHHHhcCCCEEEcccccCc-----chhHHHHHHHHHhcCCCeEEcCC
Confidence 3455666788999999622222333456666777788899999999964321 11111234455554 9999999
Q ss_pred HHHHHHhhCCC--------------CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHH
Q 011562 302 SDEAESLTGLR--------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDS 367 (483)
Q Consensus 302 ~~Ea~~l~g~~--------------~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDa 367 (483)
..|+..|+|.+ +..++++++.+++. ..|++| |.... ++++++.++++..+..+.++.|+||+
T Consensus 115 ~~Ea~~L~g~~~~~~~~~~~~~~~~~~~~aa~~l~~~~~--~~Vllk-G~~d~-l~~~~~~~~~~~~~~~~~~v~GtGdt 190 (242)
T cd01170 115 ASEIAALAGLTGLGKGVDSSSSDEEDALELAKALARKYG--AVVVVT-GEVDY-ITDGERVVVVKNGHPLLTKITGTGCL 190 (242)
T ss_pred HHHHHHHhCCCCCcCcccCCCcchHHHHHHHHHHHHHhC--CEEEEE-CCCcE-EEECCEEEEEeCCCccccCCCchHHH
Confidence 99999999842 35667788887753 468888 66664 55667777887655555667999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 011562 368 FVAAVAFGFIHNMPTVNTLTIANAVGAATA 397 (483)
Q Consensus 368 F~Ag~l~gl~~g~~l~~al~~A~aaAa~~v 397 (483)
|.|++.+.+++|.++.+|+..|...-+..+
T Consensus 191 La~aiAa~LA~g~~~~~A~~~A~~~~~~a~ 220 (242)
T cd01170 191 LGAVIAAFLAVGDDPLEAAVSAVLVYGIAG 220 (242)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999976655544
No 72
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.40 E-value=2.8e-11 Score=118.43 Aligned_cols=174 Identities=16% Similarity=0.106 Sum_probs=120.4
Q ss_pred HHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHH
Q 011562 227 VKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAE 306 (483)
Q Consensus 227 ~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~ 306 (483)
+...+..+|++++++..... +.+.++++.+++.+.++++|+... ............+++++||..|++
T Consensus 86 ~~~~~~~~davvig~Gl~~~---~~~~~l~~~~~~~~~pvVlDa~g~---------~l~~~~~~~~~~~~vItPN~~El~ 153 (272)
T TIGR00196 86 DEELLERYDVVVIGPGLGQD---PSFKKAVEEVLELDKPVVLDADAL---------NLLTYDKPKREGEVILTPHPGEFK 153 (272)
T ss_pred HHhhhccCCEEEEcCCCCCC---HHHHHHHHHHHhcCCCEEEEhHHH---------HHHhhcccccCCCEEECCCHHHHH
Confidence 34456788999998643322 237788888889999999998521 001111011346899999999999
Q ss_pred HhhCCC-----CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCC
Q 011562 307 SLTGLR-----NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMP 381 (483)
Q Consensus 307 ~l~g~~-----~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~ 381 (483)
.|+|.. +..++++++.+++ ..+|++.|..+.++..++..+.. .......+++|+||++.|.+.+.+.+|.+
T Consensus 154 ~L~g~~~~~~~~~~~aa~~l~~~~---~~vVv~kG~~~~i~~~~~~~~~~-~~~~~~~~~~GaGD~lag~iaa~la~g~~ 229 (272)
T TIGR00196 154 RLLGLVNEIQGDRLEAAQDIAQKL---QAVVVLKGAADVIAAPDGDLWIN-KTGNAALAKGGTGDVLAGLIGGLLAQNLD 229 (272)
T ss_pred HHhCCchhhhhhHHHHHHHHHHHh---CCEEEEcCCCCEEEcCCCeEEEE-CCCCCccCCCCchHHHHHHHHHHHhCCCC
Confidence 999853 4567788888863 45888999999866644555544 44557788999999966666666679999
Q ss_pred HHHHHHHH---HHHHHHHhcc-cCCCCCCCCHHHHHHHHHh
Q 011562 382 TVNTLTIA---NAVGAATAMG-CGAGRNVATLERVIELMRA 418 (483)
Q Consensus 382 l~~al~~A---~aaAa~~v~~-~G~~~~~p~~~ev~~~l~~ 418 (483)
+.+|+..| +..|+..+.. .|. ..-+.+|+.+.+.+
T Consensus 230 ~~~A~~~a~~~~~~a~~~~~~~~g~--~~~~~~dl~~~i~~ 268 (272)
T TIGR00196 230 PFDAACNAAFAHGLAGDLALKNHGA--YGLTALDLIEKIPR 268 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--CCcCHHHHHHHHHH
Confidence 99999777 6666665533 342 23467777776644
No 73
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=99.37 E-value=3.6e-10 Score=107.17 Aligned_cols=159 Identities=23% Similarity=0.194 Sum_probs=122.6
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHHcC-CeEEEcCCCCCCCCC-CCChHHHHHHH-hhhcCCCEEEcCHHHHHHhhC
Q 011562 234 SKVLFCNGYGFDELSPALIISALEYAAQVG-TSIFFDPGPRGKSLS-SGTPEEQRALS-YFLSTSDVLLLTSDEAESLTG 310 (483)
Q Consensus 234 ~~~v~isG~~~~~~~~~~~~~li~~a~~~g-~~v~~D~~~~~~~l~-~~~~~~~~~l~-~ll~~~dil~~N~~Ea~~l~g 310 (483)
.+.+=+. .-.+.+.+..+.+..++++ .++++||--..+.-. -..++..+.+. .++++++++.||..|++.|+|
T Consensus 73 v~avKtG----ML~~~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g 148 (263)
T COG0351 73 VDAVKTG----MLGSAEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEALSG 148 (263)
T ss_pred CCEEEEC----CcCCHHHHHHHHHHHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHHcC
Confidence 4455543 2235788888888889988 789999943221100 11345555554 899999999999999999999
Q ss_pred C-C-----CHHHHHHHHHHcCCCccEEEEEeCCCc----EEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCC
Q 011562 311 L-R-----NPITAGQELLRKGLRTKWVVVKMGPRG----SILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNM 380 (483)
Q Consensus 311 ~-~-----~~~~~~~~l~~~g~~~~~vVvT~G~~G----~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~ 380 (483)
. . +..++++.+.+.|. +.|+||-|... -+++.++..+.+..+.++-.++.|+|++|.|++++.|++|.
T Consensus 149 ~~~i~~~~d~~~a~~~i~~~g~--~~VliKGGH~~~~~~D~l~~~~~~~~f~~~ri~t~~tHGTGCTlSaAIaa~LA~G~ 226 (263)
T COG0351 149 LPKIKTEEDMKEAAKLLHELGA--KAVLIKGGHLEGEAVDVLYDGGSFYTFEAPRIPTKNTHGTGCTLSAAIAANLAKGL 226 (263)
T ss_pred CCccCCHHHHHHHHHHHHHhCC--CEEEEcCCCCCCCceeEEEcCCceEEEeccccCCCCCCCccHHHHHHHHHHHHcCC
Confidence 4 2 45666677778776 88999988744 35566666778888888999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 011562 381 PTVNTLTIANAVGAATAM 398 (483)
Q Consensus 381 ~l~~al~~A~aaAa~~v~ 398 (483)
++++|++.|-..-..+++
T Consensus 227 ~l~~AV~~Ak~fv~~AI~ 244 (263)
T COG0351 227 SLEEAVKKAKEFVTRAIR 244 (263)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999988777776
No 74
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=99.36 E-value=6.3e-11 Score=112.80 Aligned_cols=177 Identities=19% Similarity=0.155 Sum_probs=125.3
Q ss_pred hhhhhhccHHHHH--hhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCe--EEEcCCCCCCCCCCCChHHHHHHH-hh
Q 011562 217 FSWMNKLSAEVKT--AIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTS--IFFDPGPRGKSLSSGTPEEQRALS-YF 291 (483)
Q Consensus 217 ~~~~~~l~~~~~~--~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~--v~~D~~~~~~~l~~~~~~~~~~l~-~l 291 (483)
.+++..+...+.+ .+..+|.|+ +||+.+.-....+..+++..|+.+.. +++||---...-.+..++..+... .+
T Consensus 55 ~e~l~~~l~~l~~~~~~~~~davl-tGYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~l 133 (281)
T COG2240 55 PEQLADLLNGLEAIDKLGECDAVL-TGYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDEL 133 (281)
T ss_pred HHHHHHHHHHHHhcccccccCEEE-EccCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhh
Confidence 3445555555554 677788875 68886666667888888888887544 889994211111112233344444 79
Q ss_pred hcCCCEEEcCHHHHHHhhCCC-----CHHHHHHHHHHcCCCccEEEEEeCCC-----cEEEEECCe---eEEecCccccc
Q 011562 292 LSTSDVLLLTSDEAESLTGLR-----NPITAGQELLRKGLRTKWVVVKMGPR-----GSILVTKSS---ISCAPAFKVNV 358 (483)
Q Consensus 292 l~~~dil~~N~~Ea~~l~g~~-----~~~~~~~~l~~~g~~~~~vVvT~G~~-----G~~~~~~~~---~~~vpa~~v~v 358 (483)
++.+|++.||..|++.|+|.+ +..++++.|.+.|+ ++|+||.=.. |.+++.... .+|+. +.++
T Consensus 134 ip~AdiiTPN~fELe~Ltg~~~~~~~da~~aa~~L~~~gp--~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~-~~v~- 209 (281)
T COG2240 134 LPLADIITPNIFELEILTGKPLNTLDDAVKAARKLGADGP--KIVLVTSLSRAGMSTGNFEMLGKSAELAWHIS-PLVP- 209 (281)
T ss_pred cchhhEeCCCHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC--CEEEEecccccCCCCceEEEeccchhhhhhhh-hcCC-
Confidence 999999999999999999974 67778888888777 8899986443 455554432 34443 2332
Q ss_pred cCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Q 011562 359 TDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAM 398 (483)
Q Consensus 359 vDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~ 398 (483)
.+.+|.||.|.|.|++.+++|.+..+|+..+.++-...++
T Consensus 210 ~~~~GtGDL~sallla~lL~g~~~~~al~~~~~~V~evl~ 249 (281)
T COG2240 210 FIPNGTGDLFSALLLARLLEGLSLTQALERATAAVYEVLQ 249 (281)
T ss_pred CCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3399999999999999999999999999999887665553
No 75
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=99.08 E-value=7.4e-09 Score=100.61 Aligned_cols=162 Identities=19% Similarity=0.128 Sum_probs=109.1
Q ss_pred HHHHHhhcCCcEEEEe-cCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc--CCCEEEcC
Q 011562 225 AEVKTAIKHSKVLFCN-GYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS--TSDVLLLT 301 (483)
Q Consensus 225 ~~~~~~l~~~~~v~is-G~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~--~~dil~~N 301 (483)
++..+.++.++.+++. |.. .+...+.+..+++.+++.++++++||...... . ...+....+++ ++++++||
T Consensus 46 ~e~~~~~~~~~alvi~~G~l-~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~~--~---~~~~~~~~ll~~~~~~vItPN 119 (263)
T PRK09355 46 EEAEEMAKIAGALVINIGTL-TEERIEAMLAAGKIANEAGKPVVLDPVGVGAT--S---YRTEFALELLAEVKPAVIRGN 119 (263)
T ss_pred HHHHHHHHhcCceEEeCCCC-CHHHHHHHHHHHHHHHhcCCCEEECCcccCcc--h---hhHHHHHHHHHhcCCcEecCC
Confidence 4555667788888886 321 11112335556666788899999999754321 1 11222334443 68999999
Q ss_pred HHHHHHhhCCC-------------CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHH
Q 011562 302 SDEAESLTGLR-------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSF 368 (483)
Q Consensus 302 ~~Ea~~l~g~~-------------~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF 368 (483)
..|+..|+|.. +..+.++.+.+++. ..|++|-+.+ ++++++..+.++.-.....+.+|+||++
T Consensus 120 ~~E~~~L~g~~~~~~~vd~~~~~~~~~~~a~~la~~~~--~~VvvkG~~d--~I~~~~~~~~~~~g~~~~~~v~GtGc~L 195 (263)
T PRK09355 120 ASEIAALAGEAAETKGVDSTDGSADAVEIAKAAAKKYG--TVVVVTGEVD--YITDGERVVSVHNGHPLMTKVTGTGCLL 195 (263)
T ss_pred HHHHHHHhCCCcccCCcCCCCCHHHHHHHHHHHHHHhC--CEEEEECCCc--EEEeCCEEEEEeCCCcccCCcccccHHH
Confidence 99999999852 34567788888753 4688885443 4445555566653333455669999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 011562 369 VAAVAFGFIHNMPTVNTLTIANAVGAAT 396 (483)
Q Consensus 369 ~Ag~l~gl~~g~~l~~al~~A~aaAa~~ 396 (483)
.|.+.+.+..|.++.+|+..|...-+.+
T Consensus 196 ~~~iaa~lA~g~~~~~A~~~A~~~~~~a 223 (263)
T PRK09355 196 SAVVAAFAAVEKDYLEAAAAACAVYGIA 223 (263)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999888764444
No 76
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=99.07 E-value=5.9e-09 Score=102.90 Aligned_cols=159 Identities=14% Similarity=0.071 Sum_probs=106.7
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHHc------CCeEEEcCCC---CCCCCCCCChHHHH-HHHhhhcCCCEEEcCHH
Q 011562 234 SKVLFCNGYGFDELSPALIISALEYAAQV------GTSIFFDPGP---RGKSLSSGTPEEQR-ALSYFLSTSDVLLLTSD 303 (483)
Q Consensus 234 ~~~v~isG~~~~~~~~~~~~~li~~a~~~------g~~v~~D~~~---~~~~l~~~~~~~~~-~l~~ll~~~dil~~N~~ 303 (483)
.+.+=+. .-.+.+.+..+.+..++. ..+|++||.. .+..+... .+..+ ..+.+++++|++.||..
T Consensus 74 i~aIKiG----mL~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~-~~~~~~~~~~Llp~a~viTPN~~ 148 (321)
T PTZ00493 74 IDVVKLG----VLYSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVEN-LEYIKFALDLICPISCIITPNFY 148 (321)
T ss_pred CCEEEEC----CcCCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCc-HHHHHHHHHHhhccCEEECCCHH
Confidence 4566664 122445555665555543 2248999953 22222111 12223 33569999999999999
Q ss_pred HHHHhhC-----CC----CHHHHHHHHHH-cCCCccEEEEEeCCCc------E------EEEEC---------------C
Q 011562 304 EAESLTG-----LR----NPITAGQELLR-KGLRTKWVVVKMGPRG------S------ILVTK---------------S 346 (483)
Q Consensus 304 Ea~~l~g-----~~----~~~~~~~~l~~-~g~~~~~vVvT~G~~G------~------~~~~~---------------~ 346 (483)
|++.|+| .. +..++++.|++ .|+ +.|+||-|... . +++.+ +
T Consensus 149 Ea~~L~g~~~~~~~~~~~~~~~aA~~l~~~~G~--~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~~~~~~ 226 (321)
T PTZ00493 149 ECKVILEALDCQMDLSKANMTELCKLVTEKLNI--NACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQQIDAG 226 (321)
T ss_pred HHHHHhCCCcccCCCCHHHHHHHHHHHHHhcCC--CEEEECcCCCcccccccccccceeEEecCCccccccccccccccc
Confidence 9999997 22 35677888886 466 88999987632 1 23221 1
Q ss_pred ------eeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Q 011562 347 ------SISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAMG 399 (483)
Q Consensus 347 ------~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~~ 399 (483)
..+.+...+++..++.|.||+|.+++++.|++|+++++|++.|...-..++..
T Consensus 227 ~~~~~~~~~~~~~~ri~~~~~hGTGc~fASAIAa~LA~G~~l~~Av~~A~~fv~~aI~~ 285 (321)
T PTZ00493 227 GVTYLYDVYKLRSKRKPGKDIHGTGCTLSTAIACYLAKKHNILQSCIESKKYIYNCIRY 285 (321)
T ss_pred cccccceEEEEEecccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 13445555556677899999999999999999999999999998876666643
No 77
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=98.98 E-value=3e-08 Score=95.53 Aligned_cols=161 Identities=20% Similarity=0.125 Sum_probs=108.0
Q ss_pred ccHHHHHhhcCCcEEEEe-cCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc--CCCEEE
Q 011562 223 LSAEVKTAIKHSKVLFCN-GYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS--TSDVLL 299 (483)
Q Consensus 223 l~~~~~~~l~~~~~v~is-G~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~--~~dil~ 299 (483)
..++..+.++.++.+++. |.. ..-..+.+..+++.+++.++++++||...... ....+....+++ ++++++
T Consensus 39 ~~~e~~~~~~~~~al~ik~G~l-~~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~s-----~~r~~~~~~Ll~~~~~~vIT 112 (249)
T TIGR00694 39 AEEEVAELAKIAGALVINIGTL-DKESIEAMIAAGKSANELGVPVVLDPVGVGAT-----KFRTETALELLSEGRFAAIR 112 (249)
T ss_pred CHHHHHHHHHHcCceEEeCCCC-CHHHHHHHHHHHHHHHhcCCCEEEcccccccc-----hhHHHHHHHHHhhcCCceeC
Confidence 345566667788888887 432 11123456666777788899999999654321 111233355666 479999
Q ss_pred cCHHHHHHhhCCC-------------CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchH
Q 011562 300 LTSDEAESLTGLR-------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGD 366 (483)
Q Consensus 300 ~N~~Ea~~l~g~~-------------~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGD 366 (483)
||..|+..|+|.. +..++++++.+++ + ..|++|-+ .- +++++++.+.+.......-..+|.||
T Consensus 113 pN~~E~~~L~g~~~~~~gvd~~~~~~d~~~~a~~la~~~-~-~~VllkG~-~D-~i~~~~~~~~~~~g~~~~~~~~GtGc 188 (249)
T TIGR00694 113 GNAGEIASLAGETGLMKGVDSGEGAADAIRAAQQAAQKY-G-TVVVITGE-VD-YVSDGTSVYTIHNGTELLGKITGSGC 188 (249)
T ss_pred CCHHHHHHHhCCCCCCCCcCCccchHHHHHHHHHHHHHh-C-CEEEEECC-Cc-EEEeCCEEEEECCCChHHhCCccchH
Confidence 9999999998843 3456788888774 3 45777644 32 45555555554432221222579999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011562 367 SFVAAVAFGFIHNMPTVNTLTIANAVG 393 (483)
Q Consensus 367 aF~Ag~l~gl~~g~~l~~al~~A~aaA 393 (483)
++.+.+.+.++.|.++.+|+..|...-
T Consensus 189 ~LssaIaa~LA~g~~~~~A~~~A~~~~ 215 (249)
T TIGR00694 189 LLGSVVAAFCAVEEDPLDAAISACLLY 215 (249)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999999999999999999999887543
No 78
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=98.56 E-value=1.7e-06 Score=80.99 Aligned_cols=158 Identities=18% Similarity=0.104 Sum_probs=102.1
Q ss_pred hcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcC--CeEEEcCCCCCCCCCCCChHHHHHHHhhhc-CCCEEEcCHHHHHH
Q 011562 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVG--TSIFFDPGPRGKSLSSGTPEEQRALSYFLS-TSDVLLLTSDEAES 307 (483)
Q Consensus 231 l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g--~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~-~~dil~~N~~Ea~~ 307 (483)
+...+.+ ++||.+.......+.++.+..++.+ ...++||.--...-.+-.++.....++++. .+|++.||.-|++.
T Consensus 79 ~~~Y~~v-LTGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~~i~~ladiiTPNqFE~Ei 157 (308)
T KOG2599|consen 79 LNKYDAV-LTGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRDLIIPLADIITPNQFEAEI 157 (308)
T ss_pred cccccee-eeeccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHHHhhcchhhhcCCcchhhhh
Confidence 4455655 5789876666677888888777755 455679842111001123344444455554 59999999999999
Q ss_pred hhCCC-----CHHHHHHHHHHcCCCccEEEEEeCCC----cEEEE----E-CCeeEEecCccccccCCCCchHHHHHHHH
Q 011562 308 LTGLR-----NPITAGQELLRKGLRTKWVVVKMGPR----GSILV----T-KSSISCAPAFKVNVTDTVGCGDSFVAAVA 373 (483)
Q Consensus 308 l~g~~-----~~~~~~~~l~~~g~~~~~vVvT~G~~----G~~~~----~-~~~~~~vpa~~v~vvDttGAGDaF~Ag~l 373 (483)
|+|.. +..++.+.|+++|+ +.||||...- |..++ . +.+.+.+..++++.+ -||.||-|.|-++
T Consensus 158 Ltg~~I~t~eda~~a~~~lhq~~v--~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~ipki~~~-FtGTGDLfsaLLl 234 (308)
T KOG2599|consen 158 LTGMEIRTEEDAKRAVEKLHQKGV--KTVVITSFDLGEFTGETLRCIGSSCGSERFRYLIPKIDGV-FTGTGDLFSALLL 234 (308)
T ss_pred hcCCeeccHHHHHHHHHHHHHhCC--CEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEecccceE-EecccHHHHHHHH
Confidence 99974 56778889999986 7899997543 41122 2 223455555444444 4799999998887
Q ss_pred HHHHcC---CCHHHHHHHHHHH
Q 011562 374 FGFIHN---MPTVNTLTIANAV 392 (483)
Q Consensus 374 ~gl~~g---~~l~~al~~A~aa 392 (483)
+-+.+- .++..|+..+...
T Consensus 235 a~~~~~~~~~~l~~a~e~~ls~ 256 (308)
T KOG2599|consen 235 AWLHESPDNDDLSKAVEQVLSS 256 (308)
T ss_pred HHHhcCCCcchHHHHHHHHHHH
Confidence 776654 4566666655443
No 79
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=98.26 E-value=1.4e-05 Score=79.66 Aligned_cols=133 Identities=17% Similarity=0.106 Sum_probs=99.5
Q ss_pred cCCeEEEcCCC---CCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC-----------CHHHHHHHHHHcCCC
Q 011562 262 VGTSIFFDPGP---RGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----------NPITAGQELLRKGLR 327 (483)
Q Consensus 262 ~g~~v~~D~~~---~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~-----------~~~~~~~~l~~~g~~ 327 (483)
+-.++++||-- .+. ...+.+-..-..+++++.+|++.||..|+-.|.+.. +....+..+.+.|+
T Consensus 118 ~~~klVvDPVivatsG~-~l~~~divsl~~e~l~P~adiltPNI~Ea~~Ll~~~~~~~~~i~~v~di~~~~~~ihk~gp- 195 (523)
T KOG2598|consen 118 NIPKLVVDPVIVATSGS-SLAGKDIVSLFIEELLPFADILTPNIPEAFILLKKEKREISKIQSVFDIAKDAAKIHKLGP- 195 (523)
T ss_pred cCcceeecceEEeccCC-cccCCccHHHHHHHhhhhHHHhCCChHHHHHHHhhcccCCcccccHHHHHHHHHHHHhcCc-
Confidence 34568889831 111 122233334456889999999999999999998731 45667888888887
Q ss_pred ccEEEEEeCCCcE-----------------EEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHH
Q 011562 328 TKWVVVKMGPRGS-----------------ILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIAN 390 (483)
Q Consensus 328 ~~~vVvT~G~~G~-----------------~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~ 390 (483)
|.|+++-|.-.. +++.+.+.+.++.+-+....+-|.|-++.+++++-|+.|.++.+|++.|.
T Consensus 196 -k~VlvkGghiP~~~~~~~s~d~~~~~~~DvlydG~~F~~f~~~~~~t~~tHGtgCtLaSAIASnLA~g~sl~qAv~~ai 274 (523)
T KOG2598|consen 196 -KNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLYDGKEFYIFKSPYLATKHTHGTGCTLASAIASNLARGYSLLQAVQGAI 274 (523)
T ss_pred -ceEEEeCCCcCccccccccCcccCCceEEEEEecceEEEecccccccccccCccchHHHHHHHHHhhcCCHHHHHHHHH
Confidence 889999875321 34456667888888888899999999999999999999999999999887
Q ss_pred HHHHHHh
Q 011562 391 AVGAATA 397 (483)
Q Consensus 391 aaAa~~v 397 (483)
..--.++
T Consensus 275 ~yvq~Ai 281 (523)
T KOG2598|consen 275 EYVQNAI 281 (523)
T ss_pred HHHHHHH
Confidence 6643333
No 80
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=98.15 E-value=0.00012 Score=69.53 Aligned_cols=159 Identities=19% Similarity=0.153 Sum_probs=102.2
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhh--cCCCEEEcCH
Q 011562 225 AEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFL--STSDVLLLTS 302 (483)
Q Consensus 225 ~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll--~~~dil~~N~ 302 (483)
++..+..+.++.++++=-.+.....+.+....+.|++.++|+++||-..+. .+--.+...+++ .+.++|+.|.
T Consensus 41 ~E~~e~~~~a~al~iNiGTl~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGa-----s~~R~~~~~~LL~~~~~~vIrGN~ 115 (246)
T PF02110_consen 41 EEVEEFASIADALVINIGTLTDERIEAMKKAAKAANELGIPVVLDPVGVGA-----SKFRTEFALELLNNYKPTVIRGNA 115 (246)
T ss_dssp TTHHHHHHCTSEEEEESTTSSHHHHHHHHHHHHHHHHTT--EEEE-TTBTT-----BHHHHHHHHHHHCHS--SEEEEEH
T ss_pred HHHHHHHHHcCEEEEECCCCCHhHHHHHHHHHHHHHHcCCCEEEeCcccCC-----cHHHHHHHHHHHHhCCCcEEEeCH
Confidence 344555677889999821122222367788888999999999999976542 233355667788 4789999999
Q ss_pred HHHHHhhCCC-------------CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHH
Q 011562 303 DEAESLTGLR-------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFV 369 (483)
Q Consensus 303 ~Ea~~l~g~~-------------~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~ 369 (483)
.|...|.|.. +..+.++++.++. + .+|+-.|+.-.+ .++...+.++--..-.-..||.|+...
T Consensus 116 sEI~aLag~~~~~kGVDs~~~~~~~~~~a~~lA~k~-~--~vVvvTG~~D~I-sdg~~~~~i~nG~~~l~~itGtGC~lg 191 (246)
T PF02110_consen 116 SEIAALAGEDSKAKGVDSGDSDEDAIEAAKQLAQKY-N--CVVVVTGEVDYI-SDGNRVYRIPNGSPLLSKITGTGCMLG 191 (246)
T ss_dssp HHHHHHHTCCCCSCSSSSSCGSHHHHHHHHHHHHHT-T--SEEEEESSSEEE-EESSCEEEECSSSGGGGGSTTHHHHHH
T ss_pred HHHHHHhCcCCCCCCcCcCCcchHHHHHHHHHHHhc-C--CEEEEecCCcEE-ECCCeEEEeCCCChHhcceeccchHHH
Confidence 9999998753 1457788888874 3 366666776654 455556666644434455699998876
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Q 011562 370 AAVAFGFIHNMPTVNTLTIANAV 392 (483)
Q Consensus 370 Ag~l~gl~~g~~l~~al~~A~aa 392 (483)
+-+.+.+....+..++...|...
T Consensus 192 aliaaf~av~~d~~~aa~~a~~~ 214 (246)
T PF02110_consen 192 ALIAAFLAVAEDPLEAAVAAVAL 214 (246)
T ss_dssp HHHHHHHCCCSSHHHHHHHHHHH
T ss_pred HHHHHHHhccccchHHHHHHHHH
Confidence 66666665656666665544443
No 81
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=97.91 E-value=0.00095 Score=63.01 Aligned_cols=158 Identities=20% Similarity=0.148 Sum_probs=101.4
Q ss_pred cHHHHHhhcCCcEEEEe-cCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcC--CCEEEc
Q 011562 224 SAEVKTAIKHSKVLFCN-GYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLST--SDVLLL 300 (483)
Q Consensus 224 ~~~~~~~l~~~~~v~is-G~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~--~dil~~ 300 (483)
.++..+..+-++.++++ |.+ ..-..+.+..+++.|++.|.|+++||-..+. ...-++...++|.+ .++|..
T Consensus 46 ~eE~~e~~kia~AL~INIGTL-~~~~~~~m~~A~~~An~~~~PvvLDPVgvgA-----t~~R~~~~~~LL~~~~~~~IrG 119 (265)
T COG2145 46 PEEVEEFAKIADALLINIGTL-SAERIQAMRAAIKAANESGKPVVLDPVGVGA-----TKFRTKFALELLAEVKPAAIRG 119 (265)
T ss_pred HHHHHHHHHhccceEEeeccC-ChHHHHHHHHHHHHHHhcCCCEEecCccCCc-----hHHHHHHHHHHHHhcCCcEEec
Confidence 35556666778888888 433 3444578888999999999999999975443 12234456777763 699999
Q ss_pred CHHHHHHhhCCC-------------CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHH
Q 011562 301 TSDEAESLTGLR-------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDS 367 (483)
Q Consensus 301 N~~Ea~~l~g~~-------------~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDa 367 (483)
|..|...|.|.. +..+.++.+.++. ..+|+-.|+.-. +.++++.+.+.--..-.-..||+|+.
T Consensus 120 N~sEI~~Lag~~~~~kGVDa~~~~~~~~~~a~~~A~~~---~~vvvvTG~vD~-Isdg~~~~~i~nG~pll~~ItGtGCl 195 (265)
T COG2145 120 NASEIAALAGEAGGGKGVDAGDGAADAIEAAKKAAQKY---GTVVVVTGEVDY-ISDGTRVVVIHNGSPLLGKITGTGCL 195 (265)
T ss_pred cHHHHHHHhcccccccccccccchhhHHHHHHHHHHHh---CcEEEEECCeeE-EEcCCeEEEEECCCcHHhhhhccccH
Confidence 999999998642 3556666666653 235555566543 33344444444333234456899987
Q ss_pred HHHHHHHHHHcCCC-HHHHHHHHHH
Q 011562 368 FVAAVAFGFIHNMP-TVNTLTIANA 391 (483)
Q Consensus 368 F~Ag~l~gl~~g~~-l~~al~~A~a 391 (483)
..|-..+.+.-..+ .-+|+.-|+.
T Consensus 196 lgav~aaF~av~~d~~~~A~~~A~~ 220 (265)
T COG2145 196 LGAVVAAFLAVEKDPLLDAAAEACA 220 (265)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 66666666666666 4555544443
No 82
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=97.75 E-value=0.0018 Score=66.63 Aligned_cols=259 Identities=12% Similarity=0.064 Sum_probs=135.0
Q ss_pred CCccccCCcHHHHHHHHHHcCCceEE-EEEecCChhhHHHHHHHHHcCCCccceee--------------cCCCCccccC
Q 011562 122 DKQYWEAGGNCNVAIAAARLGLDCVT-IGHVGNEIYGRFLLDVLQDEGIGMVGMSE--------------DTDGVDTSSA 186 (483)
Q Consensus 122 ~~~~~~GGg~~NvA~~larLG~~v~l-ig~vG~D~~g~~i~~~L~~~gId~~~v~~--------------~~~~~~~~~~ 186 (483)
....+.||.+.-+|..++++|+++.+ .+.. .++..++.|.+.+|-.-.+.. .+....+...
T Consensus 85 ~~~~rmGGnAgimAn~la~lg~~~Vi~~~~~----lsk~q~~lf~~~~i~~p~~~~~~~l~~~~~~~a~~~~~d~IH~If 160 (453)
T PRK14039 85 NSEIRMGGNAGIMANVLSELGASRVVPNVAV----PSKTQLSLFSKKAVYFPGMPLQASETDGEKVGASSSDQEPIHFVF 160 (453)
T ss_pred CceEEeCChHHHHHHHHHhcCCceEEEcCCC----CCHHHHHhcCCCCEEeccccccccccCccccccccCCCCCceEEE
Confidence 45677899999999999999999654 3321 223445555333333322100 0000000122
Q ss_pred cccceeEEE-----EECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecCCCC-CC------CHHHHHH
Q 011562 187 SYETLLCWV-----LVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFD-EL------SPALIIS 254 (483)
Q Consensus 187 ~~~T~~~~v-----~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~~~~-~~------~~~~~~~ 254 (483)
.|+.+..|- ++-+-..|-+.+....+. .....+.+.+.+.+...+.|.++++|+.+- +. ..+.+.+
T Consensus 161 Ey~~G~~~~l~~~~~~aPRaNRfI~s~D~~N~--~l~i~e~f~~~l~e~~~~~D~avlSG~q~l~d~y~dg~~~~e~l~~ 238 (453)
T PRK14039 161 DFREGETFSLYGTRIRAPRENRFIATFDHLNF--RLFINPAFEQYALEHAGEMDGALISGFHLLLETYPDGSTYREKLED 238 (453)
T ss_pred EeCCCCEEecCCccEecCCCCeEEEecCCCCc--cceecHHHHHHHHhhccCCCEEEEechhhhhhhcCCcccHHHHHHH
Confidence 333443332 111111122222211111 111112222223333447999999999742 21 1233434
Q ss_pred HHHHHHH-----cCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCC---C----------CHHH
Q 011562 255 ALEYAAQ-----VGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL---R----------NPIT 316 (483)
Q Consensus 255 li~~a~~-----~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~---~----------~~~~ 316 (483)
+.+..+. .++++-+..+.... ..-....+..+++++|.+-+|++|+..+... . +..+
T Consensus 239 ~~~~i~~l~~~~~~i~iH~E~As~~~-----~~i~~~v~~~Ilp~VDSlGmNEqELa~l~~~~g~~~~~i~~~~~~~v~e 313 (453)
T PRK14039 239 SLAQLKWWKSKNEKLRIHAELGHFAS-----KEIANSVFLILAGIVDSIGMNEDELAMLANLHGIPAEGILEMNAEAIGE 313 (453)
T ss_pred HHHHHHHHHhcCCCceEEEEecCccc-----HHHHHHHHHHhhcccccccCCHHHHHHHHHHcccchhhHhhcCHHHHHH
Confidence 3333322 45788888865321 2223445568999999999999999987643 1 2345
Q ss_pred HHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 011562 317 AGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAAT 396 (483)
Q Consensus 317 ~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~ 396 (483)
++..|.+. .+.+.++|.. .+-++ .+... |. -+.+..+ +|+.+|+.+||..
T Consensus 314 a~~~l~~~-~~le~l~vHT--~~y~l-------~i~~~-----~~--------------~~~~~~~-~aL~fg~~~Aa~~ 363 (453)
T PRK14039 314 AACQLASE-SGLQRLIIHT--REFVL-------CVSKP-----DV--------------KMAKKKI-EAMEFGLKCAGVY 363 (453)
T ss_pred HHHHHHHH-cCCCEEEEEe--cceEE-------EEecC-----CC--------------CccHHHH-HHHHHHHHHHHHH
Confidence 66666665 2334444432 22111 11111 11 1223445 9999999998877
Q ss_pred hcccCCCCCCCCHHHHHHHHHhcCCCcch
Q 011562 397 AMGCGAGRNVATLERVIELMRASNLNEDN 425 (483)
Q Consensus 397 v~~~G~~~~~p~~~ev~~~l~~~~~~~~~ 425 (483)
+.. | .+++++++++.-.+...++..
T Consensus 364 A~~-G---~i~~~~~~~~~~~~~~~~~~g 388 (453)
T PRK14039 364 AAS-G---SLDGREFVEKEASKLQESDFG 388 (453)
T ss_pred Hhc-C---CCCChHHHHHhhccCCcchhH
Confidence 654 4 478889998666666666554
No 83
>PRK10565 putative carbohydrate kinase; Provisional
Probab=97.72 E-value=0.0019 Score=68.71 Aligned_cols=143 Identities=13% Similarity=0.178 Sum_probs=90.0
Q ss_pred hhcCCcEEEEe-cCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhh--hcCCCEEEcCHHHHH
Q 011562 230 AIKHSKVLFCN-GYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYF--LSTSDVLLLTSDEAE 306 (483)
Q Consensus 230 ~l~~~~~v~is-G~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~l--l~~~dil~~N~~Ea~ 306 (483)
.++.++.+++. |.. . .+....+++.+++.+.++++|+..- ..+... .....+|+||..|+.
T Consensus 317 ~~~~~~a~viGpGlg---~-~~~~~~~~~~~~~~~~P~VLDAdaL------------~ll~~~~~~~~~~VLTPh~gE~~ 380 (508)
T PRK10565 317 SLEWADVVVIGPGLG---Q-QEWGKKALQKVENFRKPMLWDADAL------------NLLAINPDKRHNRVITPHPGEAA 380 (508)
T ss_pred HhhcCCEEEEeCCCC---C-CHHHHHHHHHHHhcCCCEEEEchHH------------HHHhhCccccCCeEECCCHHHHH
Confidence 34678888887 321 1 2333455577778889999999531 111100 112469999999999
Q ss_pred HhhCCC------CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCC
Q 011562 307 SLTGLR------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNM 380 (483)
Q Consensus 307 ~l~g~~------~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~ 380 (483)
.|++.. +..+.++.+.++. + ..||+ -|..- ++.++++..++........-++|.||.+.|.+.+.+.+|.
T Consensus 381 rL~~~~~~~v~~~~~~~a~~~a~~~-~-~~vvl-KG~~~-iI~~~~~~~~~~~~G~~~ma~~GsGDvLaGiIaalla~g~ 456 (508)
T PRK10565 381 RLLGCSVAEIESDRLLSARRLVKRY-G-GVVVL-KGAGT-VIAAEPDALAIIDVGNAGMASGGMGDVLSGIIGALLGQKL 456 (508)
T ss_pred HHhCCChhhhhhhHHHHHHHHHHHh-C-CEEEE-eCCCc-EEEcCCceEEEECCCCCCCCCCChHHHHHHHHHHHHHcCC
Confidence 999743 3445667776653 2 23444 44433 4444433333333333455669999999988888888899
Q ss_pred CHHHHHHHHHHH
Q 011562 381 PTVNTLTIANAV 392 (483)
Q Consensus 381 ~l~~al~~A~aa 392 (483)
++.+|+..|+..
T Consensus 457 ~~~~Aa~~a~~l 468 (508)
T PRK10565 457 SPYDAACAGCVA 468 (508)
T ss_pred CHHHHHHHHHHH
Confidence 998888887754
No 84
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=97.67 E-value=0.0014 Score=67.68 Aligned_cols=72 Identities=14% Similarity=0.130 Sum_probs=46.4
Q ss_pred cCCcEEEEecCCCC-C-----CC----HHHHHHHHHHH--HHcCCeEEEcCCCCCCCCCCCChHH-HHHHHhhhcCCCEE
Q 011562 232 KHSKVLFCNGYGFD-E-----LS----PALIISALEYA--AQVGTSIFFDPGPRGKSLSSGTPEE-QRALSYFLSTSDVL 298 (483)
Q Consensus 232 ~~~~~v~isG~~~~-~-----~~----~~~~~~li~~a--~~~g~~v~~D~~~~~~~l~~~~~~~-~~~l~~ll~~~dil 298 (483)
...|.++++|+..- + .. .+...+.++.. ...++++-+..+... ..+. ...+..+++++|.+
T Consensus 221 ~~~D~avlSG~q~i~~~y~dg~~~~~~l~r~~~~i~~L~~~~~~i~iH~E~As~~------~~~ir~~i~~~ilp~vDSl 294 (463)
T PRK03979 221 KMVDGAILSGYQGIKEEYSDGKTAEYYLKRAKEDIKLLKKKNKDIKIHVEFASIQ------NREIRKKIITYILPHVDSV 294 (463)
T ss_pred cCCCEEEEechhhhhccccccccHHHHHHHHHHHHHHHhhCCCCceEEEEecccc------CHHHHHHHHHhhccccccc
Confidence 45999999999742 2 11 12223333334 235788888876432 2333 34456789999999
Q ss_pred EcCHHHHHHhh
Q 011562 299 LLTSDEAESLT 309 (483)
Q Consensus 299 ~~N~~Ea~~l~ 309 (483)
-+|+.|+..+.
T Consensus 295 GmNE~ELa~l~ 305 (463)
T PRK03979 295 GMDETEIANIL 305 (463)
T ss_pred cCCHHHHHHHH
Confidence 99999998654
No 85
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=97.65 E-value=0.0056 Score=58.64 Aligned_cols=167 Identities=16% Similarity=0.131 Sum_probs=103.6
Q ss_pred HHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHh---hhcCCCEEEcCHHH
Q 011562 228 KTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSY---FLSTSDVLLLTSDE 304 (483)
Q Consensus 228 ~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~---ll~~~dil~~N~~E 304 (483)
.+.++++|.+++. -.+ ... +...++++...+...++++|... ...+.. ....--|++|+.-|
T Consensus 62 ~~~~~~~~av~iG-PGl-g~~-~~~~~~~~~~~~~~~p~VlDADa------------L~~l~~~~~~~~~~~IlTPH~gE 126 (242)
T PF01256_consen 62 LELLEKADAVVIG-PGL-GRD-EETEELLEELLESDKPLVLDADA------------LNLLAENPKKRNAPVILTPHPGE 126 (242)
T ss_dssp HHHHCH-SEEEE--TT--SSS-HHHHHHHHHHHHHCSTEEEECHH------------HHCHHHCCCCSSSCEEEE-BHHH
T ss_pred HhhhccCCEEEee-cCC-CCc-hhhHHHHHHHHhhcceEEEehHH------------HHHHHhccccCCCCEEECCCHHH
Confidence 3456788999987 111 112 33345666666678889999842 111222 23455688999999
Q ss_pred HHHhhCCC-----CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcC
Q 011562 305 AESLTGLR-----NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHN 379 (483)
Q Consensus 305 a~~l~g~~-----~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g 379 (483)
+..|++.. +..+.++++.++. ..+|+=-|..-.++..+++.+..+.-. .-.-+-|.||.++|-+..-+.++
T Consensus 127 ~~rL~~~~~~~~~~~~~~a~~~a~~~---~~~vvLKG~~t~I~~p~~~~~~n~~gn-~~la~gGsGDvLaGii~~llaq~ 202 (242)
T PF01256_consen 127 FARLLGKSVEIQEDRIEAAREFAKEY---GAVVVLKGAVTIIASPGGRVYVNPTGN-PGLATGGSGDVLAGIIAGLLAQG 202 (242)
T ss_dssp HHHHHTTTCHHCCSHHHHHHHHHHHH---TSEEEEESTSSEEEEETSEEEEE-----GGGSSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCcccchhhHHHHHHHHHhhc---CcEEEEeCCCcEEEecCcceeEeCCCC-CCCCCCCcccHHHHHHHHHHHcc
Confidence 99999864 4677888887763 235666666666555566666555432 45678899999988888888999
Q ss_pred CCHHHHHHHHHHHHHHH----hcccCCCCCCCCHHHHHHHH
Q 011562 380 MPTVNTLTIANAVGAAT----AMGCGAGRNVATLERVIELM 416 (483)
Q Consensus 380 ~~l~~al~~A~aaAa~~----v~~~G~~~~~p~~~ev~~~l 416 (483)
.++.+|+..|...=+.+ .+..|. + -...|+.+.+
T Consensus 203 ~~~~~Aa~~av~lHg~Ag~~~~~~~~~--~-~~a~dli~~i 240 (242)
T PF01256_consen 203 YDPFEAACLAVYLHGRAGDLAAEKYGR--G-MLASDLIDNI 240 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHCTTCSS--C---HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCC--c-CcHHHHHHhc
Confidence 99999999888653332 333332 2 3555665544
No 86
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=97.46 E-value=0.019 Score=59.30 Aligned_cols=157 Identities=17% Similarity=0.134 Sum_probs=97.6
Q ss_pred HHHHHhhcCCcEEEEecCCC-CCCC-HHHHHHHHH---HHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEE
Q 011562 225 AEVKTAIKHSKVLFCNGYGF-DELS-PALIISALE---YAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLL 299 (483)
Q Consensus 225 ~~~~~~l~~~~~v~isG~~~-~~~~-~~~~~~li~---~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~ 299 (483)
+.+.+.....|.++++|+.. .+.+ .+.+.++.+ ..+..++++-++.+... ....++.+..+++++|-+-
T Consensus 216 ~~l~ei~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i~iH~EfAs~~------d~~~r~~i~~ilp~vDSlG 289 (453)
T PRK14038 216 ERFEEIAKKAELAIISGLQALTEENYREPFETVREHLKVLNERGIPAHLEFAFTP------DETVREEILGLLGKFYSVG 289 (453)
T ss_pred HHHHhhccCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCceEEEEeeccc------hHHHHHHHHhhCccccccc
Confidence 33445567899999999975 2222 233333333 33346788888886432 3445666667999999999
Q ss_pred cCHHHHHHhhC---CC---------------CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCC
Q 011562 300 LTSDEAESLTG---LR---------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDT 361 (483)
Q Consensus 300 ~N~~Ea~~l~g---~~---------------~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDt 361 (483)
+|++|+..+.. .+ +..+++..|++. .+.+.+.|.. .+-+++ +...
T Consensus 290 mNE~ELa~ll~~lg~~~l~~~i~~~~~~~~~~v~e~~~~L~~~-~gleri~vHT--~~y~l~-------i~~~------- 352 (453)
T PRK14038 290 LNEVELASIMEVMGEKTLAEKLLAKDPVDPIAVTEAMLKLAEK-TGVKRIHFHT--YGYYLA-------LTKY------- 352 (453)
T ss_pred cCHHHHHHHHHHhccchhhhhhhhcCccCHHHHHHHHHHHHHH-cCCCEEEEEe--cceeEE-------EecC-------
Confidence 99999988763 21 245566667765 2334444432 221111 1110
Q ss_pred CCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhcCCCcch
Q 011562 362 VGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAMGCGAGRNVATLERVIELMRASNLNEDN 425 (483)
Q Consensus 362 tGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~~~G~~~~~p~~~ev~~~l~~~~~~~~~ 425 (483)
.+..+.+|+.+|+.+||..+. .| .+.+.++++. ..+...++..
T Consensus 353 ----------------~~~~~~~aL~f~~~~AaarA~-~G---~i~~~~d~~~-~l~vp~~e~g 395 (453)
T PRK14038 353 ----------------RGEHVRDALLFAALAAAAKAM-LG---NIEKIDDVRK-ALDVPVNEKA 395 (453)
T ss_pred ----------------CHHHHHHHHHHHHHHHHHHHH-cC---CCCCHHHHHH-HhcCCcchhh
Confidence 467899999999999998875 35 3678888888 4444555553
No 87
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=97.39 E-value=0.01 Score=61.06 Aligned_cols=156 Identities=15% Similarity=0.100 Sum_probs=91.2
Q ss_pred HhhcCCcEEEEecCCCCCC------C----HHHHHHHHHHHHH-cCCeEEEcCCCCCCCCCCCChHH-HHHHHhhhcCCC
Q 011562 229 TAIKHSKVLFCNGYGFDEL------S----PALIISALEYAAQ-VGTSIFFDPGPRGKSLSSGTPEE-QRALSYFLSTSD 296 (483)
Q Consensus 229 ~~l~~~~~v~isG~~~~~~------~----~~~~~~li~~a~~-~g~~v~~D~~~~~~~l~~~~~~~-~~~l~~ll~~~d 296 (483)
+.-..+|.++++|+..-.. . .+...+.++..++ .++++-+..+... ..+. ...+..+++++|
T Consensus 205 ~i~~~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~~~i~~L~~~~~i~iH~E~As~~------~~~l~~~i~~~ilp~vD 278 (446)
T TIGR02045 205 EIGEPVDGAILSGYQGIKEEYSDGKTAKYYLERAKEDIELLKKNKDLKIHVEFASIQ------NREIRKKVVTNIFPHVD 278 (446)
T ss_pred hhhhcccEEEEEchhhhhhhccCCccHhHHHHHHHHHHHHHhhCCCCeEEEEecccc------cHHHHHHHHHhhccccc
Confidence 3345699999999974221 1 2333444444433 7788888876432 2333 344567899999
Q ss_pred EEEcCHHHHHHhh---CCC-------------CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccC
Q 011562 297 VLLLTSDEAESLT---GLR-------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTD 360 (483)
Q Consensus 297 il~~N~~Ea~~l~---g~~-------------~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvD 360 (483)
.+-+|+.|+..+. |.. ++.+++..|++. .+.+.+.|.. .+-+++ +.... ++.
T Consensus 279 SlGMNE~ELa~ll~~lg~~~l~~~i~~~~~i~~vi~a~~~l~~~-~~leri~vHT--~~y~l~-------i~~~~-~p~- 346 (446)
T TIGR02045 279 SVGMDEAEIANVLSVLGYDELSDRIFRYNRIEDLILGAKILLDE-LNLEVVQVHT--IYYIMY-------ITHAD-NPL- 346 (446)
T ss_pred cccCCHHHHHHHHHHhcCCchhhhhhccccHHHHHHHHHHHHHH-cCCCEEEEEe--cceeEE-------EeccC-CCC-
Confidence 9999999998875 321 345566667665 2334444432 121111 11100 000
Q ss_pred CCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhcCCCcc
Q 011562 361 TVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAMGCGAGRNVATLERVIELMRASNLNED 424 (483)
Q Consensus 361 ttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~~~G~~~~~p~~~ev~~~l~~~~~~~~ 424 (483)
....+.+|+.+|+.+||... ..| .+.++++++.- .+...++.
T Consensus 347 -----------------~~~~~~~aL~f~~~~Aa~rA-~~G---~i~~~~d~~~~-l~vp~~~~ 388 (446)
T TIGR02045 347 -----------------SEEELRRSLEFSTILAATRA-SLG---NIENPDDAEAG-LEVPYNER 388 (446)
T ss_pred -----------------CHHHHHHHHHHHHHHHHHHH-hcC---CCCCHHHHHHH-hcCCchhh
Confidence 01467899999999988777 335 36778888775 33444444
No 88
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=96.73 E-value=0.021 Score=53.80 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=97.4
Q ss_pred HhhcCCcEEEEe-cCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc-C-CCEEEcCHHHH
Q 011562 229 TAIKHSKVLFCN-GYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS-T-SDVLLLTSDEA 305 (483)
Q Consensus 229 ~~l~~~~~v~is-G~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~-~-~dil~~N~~Ea 305 (483)
+.+..-+.+++. |-.-.+.-...+..+++.++.+++|+++|..+ +|-.. + ..+.++. + .-++.||.-|+
T Consensus 97 k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDG----L~Lv~-q---~~e~l~~~~~~viLTPNvvEF 168 (306)
T KOG3974|consen 97 KLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADG----LWLVE-Q---LPERLIGGYPKVILTPNVVEF 168 (306)
T ss_pred HHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCc----eEehh-h---chhhhhccCceeeeCCcHHHH
Confidence 345666777776 32222333467888999999999999999864 22111 1 1111332 2 25778999999
Q ss_pred HHhhCCC----CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHc---
Q 011562 306 ESLTGLR----NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIH--- 378 (483)
Q Consensus 306 ~~l~g~~----~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~--- 378 (483)
..|++.. +-...+..|...-. ...|+--|+.-.++...++.+..+. +-...-.=|-||...|.+..-+..
T Consensus 169 kRLcd~~l~~~d~~~~~~~L~~~l~--nv~vvqKG~~D~ils~~~ev~~~s~-eGs~kRcGGQGDiLaGsla~fl~w~k~ 245 (306)
T KOG3974|consen 169 KRLCDAELDKVDSHSQMQHLAAELM--NVTVVQKGESDKILSPDSEVRVCST-EGSLKRCGGQGDILAGSLATFLSWAKL 245 (306)
T ss_pred HHHHHHhhccccchHHHHHHHHHhc--CeEEEEecCCceeeCCCCeeEEccC-CCCccccCCCcchhhhHHHHHHHHHHh
Confidence 9998752 23344555554433 3477878887775544444443332 334556678899988876654322
Q ss_pred -CCCHHHHHHHHHHHHHHHhcccC
Q 011562 379 -NMPTVNTLTIANAVGAATAMGCG 401 (483)
Q Consensus 379 -g~~l~~al~~A~aaAa~~v~~~G 401 (483)
.....+++-.|..+++..+.+.|
T Consensus 246 ~~~e~~~~~~~a~~a~s~~vr~a~ 269 (306)
T KOG3974|consen 246 LSGEQDSAAFLAAVAGSIMVRRAG 269 (306)
T ss_pred ccCCccchhhhhhhhhHHHHHHHH
Confidence 23444666667666666665554
No 89
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=96.25 E-value=0.16 Score=49.66 Aligned_cols=167 Identities=19% Similarity=0.163 Sum_probs=87.4
Q ss_pred hcCCcEEEEe-cCCCCCCCHHHHHHHHHHHHHcC-CeEEEcCCCCCCCCCCCChHHHHHHHhhhc-CCCEEEcCHHHHHH
Q 011562 231 IKHSKVLFCN-GYGFDELSPALIISALEYAAQVG-TSIFFDPGPRGKSLSSGTPEEQRALSYFLS-TSDVLLLTSDEAES 307 (483)
Q Consensus 231 l~~~~~v~is-G~~~~~~~~~~~~~li~~a~~~g-~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~-~~dil~~N~~Ea~~ 307 (483)
....|.+++. |..... ...++++..-... .++++|...-.. ......++. ..-|+.|+.-|++.
T Consensus 99 ~~~~~avviGpGlG~~~----~~~~~~~~~l~~~~~p~ViDADaL~~---------la~~~~~~~~~~~VlTPH~gEf~r 165 (284)
T COG0063 99 VERADAVVIGPGLGRDA----EGQEALKELLSSDLKPLVLDADALNL---------LAELPDLLDERKVVLTPHPGEFAR 165 (284)
T ss_pred hccCCEEEECCCCCCCH----HHHHHHHHHHhccCCCEEEeCcHHHH---------HHhCcccccCCcEEECCCHHHHHH
Confidence 4678888887 332222 2223333333333 899999853110 000111221 22678899999999
Q ss_pred hhCCC------CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCC-
Q 011562 308 LTGLR------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNM- 380 (483)
Q Consensus 308 l~g~~------~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~- 380 (483)
|++.+ +..++++++.++. ..+||=-|..-++...+++.+..+ .--.-.-+=|.||+.+|-+.+-|+++.
T Consensus 166 L~g~~~~~~~~~r~~~a~~~a~~~---~~vvVLKG~~tvI~~~~g~~~~n~-~G~~~ma~GGtGDvLaGii~alLAq~~~ 241 (284)
T COG0063 166 LLGTEVDEIEVDRLEAARELAAKY---GAVVVLKGAVTVIADPDGEVFVNP-TGNPGMATGGTGDVLAGIIGALLAQGPA 241 (284)
T ss_pred hcCCcccccccchHHHHHHHHHHc---CCEEEEeCCCCEEEcCCCcEEEcC-CCCHHhccCcchHHHHHHHHHHHhCCCC
Confidence 99832 3467788888763 235555566555444232333322 222334466899997655555555551
Q ss_pred CHHHHHHHHHHH---HH-HHhcccCCCCCCCCHHHHHHHHHh
Q 011562 381 PTVNTLTIANAV---GA-ATAMGCGAGRNVATLERVIELMRA 418 (483)
Q Consensus 381 ~l~~al~~A~aa---Aa-~~v~~~G~~~~~p~~~ev~~~l~~ 418 (483)
++.+|+..|+.. |+ +.....| -.+..|+.+.+.+
T Consensus 242 ~~~~Aa~~g~~~h~~ag~la~~~~g----~~~a~Dl~~~ip~ 279 (284)
T COG0063 242 DPLEAAAAGAWLHGRAGELAAKKHG----GLTATDLIEAIPR 279 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhccC----CCCHHHHHHHHHH
Confidence 344555544432 22 2233333 2355666555543
No 90
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=96.12 E-value=0.022 Score=59.46 Aligned_cols=77 Identities=12% Similarity=0.117 Sum_probs=45.9
Q ss_pred HHHhhcCCcEEEEecCCCCC------CCH-H---HHHHHHHHHH-HcCCeEEEcCCCCCCCCCCCChHH-HHHHHhhhcC
Q 011562 227 VKTAIKHSKVLFCNGYGFDE------LSP-A---LIISALEYAA-QVGTSIFFDPGPRGKSLSSGTPEE-QRALSYFLST 294 (483)
Q Consensus 227 ~~~~l~~~~~v~isG~~~~~------~~~-~---~~~~li~~a~-~~g~~v~~D~~~~~~~l~~~~~~~-~~~l~~ll~~ 294 (483)
+.+...+.|.++++|+.+.. -.. + .+.+.++..+ ..+++|-+..+... ..+. +..+..++++
T Consensus 203 l~~~~~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~l~~~~~~~iH~E~As~~------d~~l~~~i~~~ilp~ 276 (444)
T PF04587_consen 203 LEEIAFKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKLLKSNPDIPIHLELASFA------DEELRKEILEKILPH 276 (444)
T ss_dssp HHHHHTT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHHHH-HTT-EEEEE----S------SHHHHHHHHHHHGGG
T ss_pred HHhhccCCCEEEEeccccchhhccchhHHHHHHHHHHHHHHhccCCCCCceEEEecccc------CHHHHHHHHHHhhcc
Confidence 33445569999999997533 122 2 2233333444 58899999886532 2443 4455689999
Q ss_pred CCEEEcCHHHHHHhh
Q 011562 295 SDVLLLTSDEAESLT 309 (483)
Q Consensus 295 ~dil~~N~~Ea~~l~ 309 (483)
+|.+-+|++|+..+.
T Consensus 277 vDSlGmNEqEL~~l~ 291 (444)
T PF04587_consen 277 VDSLGMNEQELANLL 291 (444)
T ss_dssp SSEEEEEHHHHHHHH
T ss_pred ccccccCHHHHHHHH
Confidence 999999999999764
No 91
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=95.06 E-value=0.29 Score=51.00 Aligned_cols=172 Identities=13% Similarity=0.068 Sum_probs=85.1
Q ss_pred CCccccCCcHHHHHHHHHHcCC-ceEEEEEecCChhhHHHHHHHHHcCCCcccee--ecCCCCccccCcccceeEEEEE-
Q 011562 122 DKQYWEAGGNCNVAIAAARLGL-DCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMS--EDTDGVDTSSASYETLLCWVLV- 197 (483)
Q Consensus 122 ~~~~~~GGg~~NvA~~larLG~-~v~lig~vG~D~~g~~i~~~L~~~gId~~~v~--~~~~~~~~~~~~~~T~~~~v~v- 197 (483)
....+.||.+.-+|..++++|. +|.+.+.+... .....+.+.+|-.-... .+++. ......|+.+..|--+
T Consensus 100 ~~~~~mGGnAgimAn~la~~g~~~Vil~~p~~~k----~~~~L~~d~~i~~p~~e~~~~~d~-IHlIlEy~~G~~~~~~~ 174 (445)
T cd01938 100 WDELRMGGNAGLMANRLAGEGDLKVLLGVPQSSK----LQAELFLDGPIVVPTFENLIEEDE-IHLILEYPRGESWGDFV 174 (445)
T ss_pred CceEEeCChHHHHHHHHHhcCCceEEEecCCCcH----HHHHhCCCCCeeecccccCCCCCc-cEEEEEcCCCCEecceE
Confidence 4567789999999999999999 87777765543 22222222222221111 00000 0011122222222111
Q ss_pred CCCCCcccccccCCCCChhhhhhhhccHHHHHhhc-CCcEEEEecCCCC-CCC--HHHHHHHHHHHHH------cCCeEE
Q 011562 198 DPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIK-HSKVLFCNGYGFD-ELS--PALIISALEYAAQ------VGTSIF 267 (483)
Q Consensus 198 d~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~-~~~~v~isG~~~~-~~~--~~~~~~li~~a~~------~g~~v~ 267 (483)
-+-..|-+. ..+... + ....+.+ +....+ +.|.++++|+.+. +.+ .....+.++.+++ ..+++-
T Consensus 175 aPraNRfI~-~~d~~n-~-l~~~ee~---~~~i~~~~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH 248 (445)
T cd01938 175 APRANRFIF-HDDDNN-P-MLMREEF---FSSILEFQPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIH 248 (445)
T ss_pred cCCCCeEEE-ecCCcc-h-hhhhHHH---HHHHhhcCCCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEE
Confidence 111112121 111111 1 1111111 222233 3899999999752 221 2233333333322 347788
Q ss_pred EcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhh
Q 011562 268 FDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLT 309 (483)
Q Consensus 268 ~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~ 309 (483)
+..+.... ..-....+..+++++|-+=+|+.|+..+.
T Consensus 249 ~E~As~~d-----~~l~~~i~~~ilp~VDSlGmNEqEL~~l~ 285 (445)
T cd01938 249 LELASTVD-----EELREEILHEVVPYVDSLGLNEQELANLL 285 (445)
T ss_pred EEeccccc-----HHHHHHHHHHhcccccccccCHHHHHHHH
Confidence 87764321 22234455678999999999999998775
No 92
>PRK09330 cell division protein FtsZ; Validated
Probab=87.28 E-value=36 Score=34.90 Aligned_cols=142 Identities=13% Similarity=0.106 Sum_probs=73.1
Q ss_pred CCcHHHHHHHHHHcCCc-eEEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccc
Q 011562 128 AGGNCNVAIAAARLGLD-CVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFC 206 (483)
Q Consensus 128 GGg~~NvA~~larLG~~-v~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~ 206 (483)
||+|.|+.-.+.+.|.+ |.|+. +-.| .+.|.....+... .+.+.-.++.-
T Consensus 22 GG~G~Nav~~m~~~~~~~v~fia-~NTD------~q~L~~~~a~~ki----------------------~lG~~~t~GlG 72 (384)
T PRK09330 22 GGGGGNAVNRMIEEGIQGVEFIA-ANTD------AQALLKSKAPVKI----------------------QLGEKLTRGLG 72 (384)
T ss_pred CCcHHHHHHHHHHcCCCCceEEE-EeCc------HHHHhcCCCCeEE----------------------EcCCcccccCC
Confidence 78899999999998844 55443 5566 3466654444321 11111001110
Q ss_pred cccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEE-EcCCCCCCCCCCCChHHH
Q 011562 207 SRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIF-FDPGPRGKSLSSGTPEEQ 285 (483)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~-~D~~~~~~~l~~~~~~~~ 285 (483)
++...+......+...+.+...++.+|.|++..-+-+.......--+.+.+++.++.++ +=+.|....-........
T Consensus 73 --aG~~pe~G~~aaee~~e~I~~~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF~fEG~~r~~nA~ 150 (384)
T PRK09330 73 --AGANPEVGRKAAEESREEIREALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPFSFEGKKRMKQAE 150 (384)
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCccccchhHHHHHH
Confidence 01111112222233335667788999999887443333333344456677888886543 222222110000112345
Q ss_pred HHHHhhhcCCCEEEc
Q 011562 286 RALSYFLSTSDVLLL 300 (483)
Q Consensus 286 ~~l~~ll~~~dil~~ 300 (483)
..++.+.+++|.+++
T Consensus 151 ~gL~~L~~~~D~vIv 165 (384)
T PRK09330 151 EGIEELRKHVDTLIV 165 (384)
T ss_pred HHHHHHHHHCCEEEE
Confidence 567888889996653
No 93
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=86.52 E-value=9.4 Score=35.76 Aligned_cols=84 Identities=12% Similarity=0.119 Sum_probs=58.8
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEc-----CHHHHHH
Q 011562 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLL-----TSDEAES 307 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~-----N~~Ea~~ 307 (483)
...-|.+||--+ -+..+.+.++++.+++.|+.+.+|.++... .+.+..+++.+|.+.+ +.+..+.
T Consensus 38 sggGVt~SGGEP-llq~~fl~~l~~~~k~~gi~~~leTnG~~~---------~~~~~~l~~~~D~~l~DiK~~d~~~~~~ 107 (213)
T PRK10076 38 SGGGVTLSGGEV-LMQAEFATRFLQRLRLWGVSCAIETAGDAP---------ASKLLPLAKLCDEVLFDLKIMDATQARD 107 (213)
T ss_pred CCCEEEEeCchH-HcCHHHHHHHHHHHHHcCCCEEEECCCCCC---------HHHHHHHHHhcCEEEEeeccCCHHHHHH
Confidence 456788886332 245678899999999999999999987532 3456677888887654 6666778
Q ss_pred hhCCC--CHHHHHHHHHHcCC
Q 011562 308 LTGLR--NPITAGQELLRKGL 326 (483)
Q Consensus 308 l~g~~--~~~~~~~~l~~~g~ 326 (483)
++|.. ...+-++.+.+.|.
T Consensus 108 ~tG~~~~~il~nl~~l~~~g~ 128 (213)
T PRK10076 108 VVKMNLPRVLENLRLLVSEGV 128 (213)
T ss_pred HHCCCHHHHHHHHHHHHhCCC
Confidence 88864 23455566666654
No 94
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=84.89 E-value=23 Score=35.55 Aligned_cols=149 Identities=14% Similarity=0.132 Sum_probs=77.8
Q ss_pred CCcHHHHHHHHHHcCCc-eEEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccc
Q 011562 128 AGGNCNVAIAAARLGLD-CVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFC 206 (483)
Q Consensus 128 GGg~~NvA~~larLG~~-v~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~ 206 (483)
||++.|+.-.+.+-|.+ +.++ ++..| .+.|+...++.... ..... | ++.
T Consensus 20 Gg~G~n~v~~m~~~~~~gve~i-a~nTD------~q~L~~~~a~~ki~-iG~~~---------t------------~Gl- 69 (338)
T COG0206 20 GGAGGNAVNRMIEEGVEGVEFI-AINTD------AQALKSSKADRKIL-IGESI---------T------------RGL- 69 (338)
T ss_pred CCcchHHHHHHHHhhhCceEEE-EeccC------HHHHhccccCeEEE-eccce---------e------------ecc-
Confidence 78899999999999988 5555 47778 46666655443322 11110 0 000
Q ss_pred cccCCCCChhhhhhhhccHHHHHhhcCCcEEEEe-cCCCCCCCHHHHHHHHHHHHHcCCeEE-EcCCCCCCCCCCCChHH
Q 011562 207 SRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCN-GYGFDELSPALIISALEYAAQVGTSIF-FDPGPRGKSLSSGTPEE 284 (483)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~is-G~~~~~~~~~~~~~li~~a~~~g~~v~-~D~~~~~~~l~~~~~~~ 284 (483)
.++...+......+...+++.+.++.+|.+++. |..- ..-....--+.+.+++.|..++ +..-|....-.......
T Consensus 70 -GaGa~P~vG~~aAee~~~~I~~~l~g~dmvfitaG~GG-GTGtGaaPVvakiake~g~ltvavvt~Pf~~EG~~r~~~A 147 (338)
T COG0206 70 -GAGANPEVGRAAAEESIEEIEEALKGADMVFVTAGMGG-GTGTGAAPVVAEIAKELGALTVAVVTLPFSFEGSPRMENA 147 (338)
T ss_pred -CCCCCcHHHHHHHHHHHHHHHHHhccCCeEEEEeeecC-CccccccHHHHHHHHhcCCcEEEEEEecchhcCchHHHHH
Confidence 111111222222233346677889999966655 4432 2222223345566667776644 33322221111112344
Q ss_pred HHHHHhhhcCCC--EEEcCHHHHHHh
Q 011562 285 QRALSYFLSTSD--VLLLTSDEAESL 308 (483)
Q Consensus 285 ~~~l~~ll~~~d--il~~N~~Ea~~l 308 (483)
.+.++.+-+++| ++++|+.-++..
T Consensus 148 ~~gi~~L~~~~DtlIvi~Ndkll~~~ 173 (338)
T COG0206 148 EEGIEELREVVDTLIVIPNDKLLKGK 173 (338)
T ss_pred HHHHHHHHHhCCcEEEEecHHHHhcc
Confidence 556778888888 445676655544
No 95
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=82.47 E-value=37 Score=34.41 Aligned_cols=147 Identities=11% Similarity=0.086 Sum_probs=73.7
Q ss_pred CCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCccccc
Q 011562 128 AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCS 207 (483)
Q Consensus 128 GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~ 207 (483)
||+|.|+.-.+.+.|..-.-+-++-.| .+.|.....+.... +...-.++.-.
T Consensus 26 Gg~G~n~v~~l~~~~~~~~~~iainTD------~~~L~~~~a~~ki~----------------------iG~~~t~G~Ga 77 (349)
T TIGR00065 26 GGGGNNTVNRMLEEGVEGVEFIAINTD------AQHLKTTKADKKIL----------------------IGKKLTRGLGA 77 (349)
T ss_pred CCcHHHHHHHHHHcCCCceEEEEEECC------HHHHhcCCCCeEEE----------------------cCCCCCCCCCC
Confidence 788999999999998654444446667 25565544332211 11110011000
Q ss_pred ccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEE-EcCCCCCCCCCCCChHHHH
Q 011562 208 RADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIF-FDPGPRGKSLSSGTPEEQR 286 (483)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~-~D~~~~~~~l~~~~~~~~~ 286 (483)
+-.........+...+.+...++++|.+++...+-+........-+.+.+++.++.++ +-+.|....-.........
T Consensus 78 --G~~~~~G~~~aee~~d~Ir~~le~~D~vfI~aglGGGTGSG~apvia~~ake~~~l~vaivt~Pf~~Eg~~r~~nA~~ 155 (349)
T TIGR00065 78 --GGNPEIGRKAAEESRDEIRKLLEGADMVFITAGMGGGTGTGAAPVVAKIAKELGALTVAVVTKPFKFEGLKRRKKAEE 155 (349)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEeccCccchhHHHHHHHHHHHcCCCEEEEEeCCccccchhhHHHHHH
Confidence 0001112222233335566778999998876433333333344455566777775543 3222221100111223455
Q ss_pred HHHhhhcCCCEEEc--CHHH
Q 011562 287 ALSYFLSTSDVLLL--TSDE 304 (483)
Q Consensus 287 ~l~~ll~~~dil~~--N~~E 304 (483)
.+..+.+.+|.+++ |+.=
T Consensus 156 ~l~~L~~~~D~vividNd~L 175 (349)
T TIGR00065 156 GLERLKQAVDTLIVIPNDKL 175 (349)
T ss_pred HHHHHHHhCCEEEEEeCHHH
Confidence 67888888996654 5443
No 96
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=81.72 E-value=24 Score=34.18 Aligned_cols=83 Identities=22% Similarity=0.200 Sum_probs=58.4
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEc-----CHHHHHH
Q 011562 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLL-----TSDEAES 307 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~-----N~~Ea~~ 307 (483)
..+.|.++|-- +.+..+.+.++++.|++.|+.+.+|.++... .+.+..+++.+|.+.+ +.+-.+.
T Consensus 83 ~~~gvt~SGGE-P~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~---------~~~~~~l~~~~D~v~~DlK~~~~~~y~~ 152 (260)
T COG1180 83 SGGGVTFSGGE-PTLQAEFALDLLRAAKERGLHVALDTNGFLP---------PEALEELLPLLDAVLLDLKAFDDELYRK 152 (260)
T ss_pred CCCEEEEECCc-chhhHHHHHHHHHHHHHCCCcEEEEcCCCCC---------HHHHHHHHhhcCeEEEeeccCChHHHHH
Confidence 67888888632 2355689999999999999999999987542 2334566777776654 4444788
Q ss_pred hhCCCC--HHHHHHHHHHcC
Q 011562 308 LTGLRN--PITAGQELLRKG 325 (483)
Q Consensus 308 l~g~~~--~~~~~~~l~~~g 325 (483)
++|... ..+.++.+.+.|
T Consensus 153 ~tg~~~~~vl~~~~~l~~~g 172 (260)
T COG1180 153 LTGADNEPVLENLELLADLG 172 (260)
T ss_pred HhCCCcHHHHHHHHHHHcCC
Confidence 887653 455666666655
No 97
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=81.06 E-value=39 Score=33.51 Aligned_cols=143 Identities=13% Similarity=0.092 Sum_probs=70.9
Q ss_pred cCCcHHHHHHHHHHcCCc-eEEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCccc
Q 011562 127 EAGGNCNVAIAAARLGLD-CVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGF 205 (483)
Q Consensus 127 ~GGg~~NvA~~larLG~~-v~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~ 205 (483)
.||+|.|+.-.+.+.|.+ +.++. +-.| .+.|+....+.... +.+.-.++.
T Consensus 8 vGg~G~n~v~~l~~~~~~~~~~~a-~ntD------~~~L~~~~~~~k~~----------------------ig~~~t~g~ 58 (304)
T cd02201 8 VGGGGGNAVNRMIESGLEGVEFIA-ANTD------AQALAKSKAPNKIQ----------------------LGKELTRGL 58 (304)
T ss_pred eCCcHHHHHHHHHHcCCCCceEEE-EECC------HHHHhcCCCCcEEE----------------------cCCCCCCCC
Confidence 378899999999999864 44443 5556 35565544332221 111100000
Q ss_pred ccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEE-EcCCCCCCCCCCCChHH
Q 011562 206 CSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIF-FDPGPRGKSLSSGTPEE 284 (483)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~-~D~~~~~~~l~~~~~~~ 284 (483)
-. +-..+......+...+.+.+.++++|.+++...+-+.........+.+.+++.+..++ +-+.|....-.......
T Consensus 59 Ga--g~~~~~g~~~a~~~~~~I~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~~Eg~~~~~nA 136 (304)
T cd02201 59 GA--GGDPEVGRKAAEESREEIKEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFSFEGKKRMRQA 136 (304)
T ss_pred CC--CCCHHHHHHHHHHHHHHHHHHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCccccchhHHHHH
Confidence 00 0000112222233335566778899998877433333333344446677788776432 33332211000111233
Q ss_pred HHHHHhhhcCCCEEEc
Q 011562 285 QRALSYFLSTSDVLLL 300 (483)
Q Consensus 285 ~~~l~~ll~~~dil~~ 300 (483)
...+..+.+.+|.+++
T Consensus 137 ~~~l~~L~~~~d~~iv 152 (304)
T cd02201 137 EEGLEELRKHVDTLIV 152 (304)
T ss_pred HHHHHHHHHhCCEEEE
Confidence 4457778888886654
No 98
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=80.80 E-value=48 Score=32.85 Aligned_cols=143 Identities=12% Similarity=0.059 Sum_probs=72.7
Q ss_pred cCCcHHHHHHHHHHcCCc-eEEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCccc
Q 011562 127 EAGGNCNVAIAAARLGLD-CVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGF 205 (483)
Q Consensus 127 ~GGg~~NvA~~larLG~~-v~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~ 205 (483)
.||+|.|++-.+.+.|.+ +.++ ++-.| .+.|.....+.. +++.+.-.++.
T Consensus 8 vGg~G~n~v~~~~~~~~~~~~~i-ainTd------~~~L~~~~a~~k----------------------i~iG~~~t~g~ 58 (303)
T cd02191 8 FGGAGGNIVDKFLEYDKEGRSAV-AVNTD------AQDLLGLEAENR----------------------VLIGQARTKGL 58 (303)
T ss_pred ECchHHHHHHHHHHcCCCCccEE-EEECc------HHHHhcCCCCcE----------------------EecCCccccCC
Confidence 378899999999998854 4444 46667 245544333221 11111100000
Q ss_pred ccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEE-EcCCCCCCCCCCCChHH
Q 011562 206 CSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIF-FDPGPRGKSLSSGTPEE 284 (483)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~-~D~~~~~~~l~~~~~~~ 284 (483)
- .+-..+...+..+...+.+...++.+|.|++...+-...-......+++.+++.+..++ +-+.|....-.......
T Consensus 59 G--aG~~~~~G~~~a~e~~~~I~~~le~~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~~~~~vvt~Pf~~Eg~~~~~NA 136 (303)
T cd02191 59 G--AGANPELGAEAAEEVQEAIDNIPVHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVTLPFSDEGGIRMLNA 136 (303)
T ss_pred C--CCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCccchhHHHHHHHHHHHhCCCEEEEEeCCcccCCccchhhH
Confidence 0 00111112222333445667778899998887444344444555566777777665432 33322211001112234
Q ss_pred HHHHHhhhcCCCEEEc
Q 011562 285 QRALSYFLSTSDVLLL 300 (483)
Q Consensus 285 ~~~l~~ll~~~dil~~ 300 (483)
...+..+.+.+|.+++
T Consensus 137 ~~~l~~L~~~~D~~iv 152 (303)
T cd02191 137 AEGFQTLVREVDNLMV 152 (303)
T ss_pred HHHHHHHHHhCCEEEE
Confidence 4567788888886654
No 99
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=76.67 E-value=30 Score=27.71 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=32.3
Q ss_pred HHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcC
Q 011562 227 VKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDP 270 (483)
Q Consensus 227 ~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~ 270 (483)
+...+.++|+|++-- ..++.+....+-+.|++.++|+++--
T Consensus 42 l~~~i~~aD~VIv~t---~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 42 LPSKIKKADLVIVFT---DYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHhcCCCCEEEEEe---CCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 445678999887651 35678889999999999999998854
No 100
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=76.45 E-value=94 Score=31.73 Aligned_cols=80 Identities=11% Similarity=0.031 Sum_probs=51.4
Q ss_pred HHhhcCCcEEEEecCCC------CCCCH----HHHHHHHHHHHH-cCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCC
Q 011562 228 KTAIKHSKVLFCNGYGF------DELSP----ALIISALEYAAQ-VGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSD 296 (483)
Q Consensus 228 ~~~l~~~~~v~isG~~~------~~~~~----~~~~~li~~a~~-~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~d 296 (483)
.+..+..|..++|||.. .+.+. +...+-++..++ .++++-+...... +..-.+..+..+++.++
T Consensus 220 ~~i~~~vDgaiiSGyq~l~eey~dg~t~~~yle~s~e~i~~lk~~~~irvHlEfas~~-----d~~irk~i~~~il~~v~ 294 (466)
T COG4809 220 DEIAKEVDGAIISGYQGLKEEYSDGSTYKYYLERSREDIKALKDRENIRVHLEFASIQ-----DRKIRKEILTNILSIVY 294 (466)
T ss_pred HHHhhhcceeeeechhhhhhhcCCCCcHHHHHHHHHHHHHHHhccccceEEEEecccc-----cHHHHHHHHHHHHhhhh
Confidence 34556799999999974 12211 222333444555 7788888775422 22333455667999999
Q ss_pred EEEcCHHHHHHhhCCC
Q 011562 297 VLLLTSDEAESLTGLR 312 (483)
Q Consensus 297 il~~N~~Ea~~l~g~~ 312 (483)
=+=+|+.|...+...-
T Consensus 295 SvGldE~ElA~vl~vl 310 (466)
T COG4809 295 SVGLDEVELANVLNVL 310 (466)
T ss_pred hcCCCHHHHHHHHHhh
Confidence 9999999988776543
No 101
>PRK13018 cell division protein FtsZ; Provisional
Probab=75.39 E-value=1e+02 Score=31.61 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=75.1
Q ss_pred CCcHHHHHHHHHHcCCc-eEEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccc
Q 011562 128 AGGNCNVAIAAARLGLD-CVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFC 206 (483)
Q Consensus 128 GGg~~NvA~~larLG~~-v~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~ 206 (483)
||+|.|+.-.+.+.|.+ +.++. +-.|. +.|.....+.. + .+.+.-.++.
T Consensus 37 GGaG~N~v~~m~~~~~~~v~~ia-iNTD~------q~L~~~~a~~k-i---------------------~iG~~~t~G~- 86 (378)
T PRK13018 37 GGAGNNTINRLYEIGIEGAETIA-INTDA------QHLAMIKADKK-I---------------------LIGKSLTRGL- 86 (378)
T ss_pred CCcHHHHHHHHHHcCCCCceEEE-EECCH------HHHhcCCCCcE-E---------------------ecCCccCCCC-
Confidence 78899999999998865 55444 66673 56655444322 1 1111100000
Q ss_pred cccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEE-cCCCCCCCCCCCChHHH
Q 011562 207 SRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFF-DPGPRGKSLSSGTPEEQ 285 (483)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~-D~~~~~~~l~~~~~~~~ 285 (483)
.++-..+......+...+.+.+.++.+|.|++...+-+........-+++.+++.+..++- =.-|+...-........
T Consensus 87 -GaG~dp~~G~~aaee~~d~I~~~le~~D~vfI~aGLGGGTGSGaapvIa~iake~g~ltv~vVt~Pf~~EG~~r~~nA~ 165 (378)
T PRK13018 87 -GAGGDPEVGRKAAEESRDEIKEVLKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGALVVGVVTKPFKFEGRARMQKAE 165 (378)
T ss_pred -CCCCChHHHHHHHHHHHHHHHHHhcCCCEEEEEeeccCcchhhHHHHHHHHHHHcCCCeEEEEEcCcccccHhHHHHHH
Confidence 0011111122222333355677789999988874443344444555667778887765331 11111100000011233
Q ss_pred HHHHhhhcCCCEEEc--CHHHHH
Q 011562 286 RALSYFLSTSDVLLL--TSDEAE 306 (483)
Q Consensus 286 ~~l~~ll~~~dil~~--N~~Ea~ 306 (483)
..++.+.+++|.+++ |+.=.+
T Consensus 166 ~gL~~L~e~~D~vividNd~L~~ 188 (378)
T PRK13018 166 EGIERLREAADTVIVIDNNRLLD 188 (378)
T ss_pred HHHHHHHHhCCEEEEEecHHHHH
Confidence 567888888996654 554333
No 102
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=74.25 E-value=32 Score=30.77 Aligned_cols=115 Identities=15% Similarity=0.174 Sum_probs=68.6
Q ss_pred cCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCCh------hhhhhh-hcc
Q 011562 152 GNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEP------AFSWMN-KLS 224 (483)
Q Consensus 152 G~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~------~~~~~~-~l~ 224 (483)
|.-..-..+.+.|++.|...-++...+=+ ..+..+++.++-++ +|+.+...+.++.... ..+.++ ...
T Consensus 17 GKtTl~~ki~e~L~~~g~kvgGf~t~EVR----~gGkR~GF~Ivdl~-tg~~~~la~~~~~~~rvGkY~V~v~~le~i~~ 91 (179)
T COG1618 17 GKTTLVLKIAEKLREKGYKVGGFITPEVR----EGGKRIGFKIVDLA-TGEEGILARVGFSRPRVGKYGVNVEGLEEIAI 91 (179)
T ss_pred cHHHHHHHHHHHHHhcCceeeeEEeeeee----cCCeEeeeEEEEcc-CCceEEEEEcCCCCcccceEEeeHHHHHHHhH
Confidence 34445667888888888777776533211 11223555555444 2555554444432111 111222 333
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCC
Q 011562 225 AEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPG 271 (483)
Q Consensus 225 ~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~ 271 (483)
+.+..+++.+|+++++-..+.+.......++++..-+.+.++++-..
T Consensus 92 ~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlH 138 (179)
T COG1618 92 PALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLH 138 (179)
T ss_pred HHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEe
Confidence 55666778899999997777777667778888888778887776553
No 103
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=72.86 E-value=24 Score=30.96 Aligned_cols=58 Identities=14% Similarity=0.068 Sum_probs=43.8
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHH
Q 011562 234 SKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDE 304 (483)
Q Consensus 234 ~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~E 304 (483)
.+.|.++| ++...+.+.++++.+++.|.++.++.++.. .+...++++.+|+++....+
T Consensus 62 ~~gVt~SG---GEl~~~~l~~ll~~lk~~Gl~i~l~Tg~~~----------~~~~~~il~~iD~l~~g~y~ 119 (147)
T TIGR02826 62 ISCVLFLG---GEWNREALLSLLKIFKEKGLKTCLYTGLEP----------KDIPLELVQHLDYLKTGRWI 119 (147)
T ss_pred CCEEEEec---hhcCHHHHHHHHHHHHHCCCCEEEECCCCC----------HHHHHHHHHhCCEEEEChHH
Confidence 35678886 456667889999999999999999987432 12345778899999987754
No 104
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=65.50 E-value=12 Score=28.76 Aligned_cols=46 Identities=24% Similarity=0.329 Sum_probs=35.8
Q ss_pred cCCc--HHHHHHHHHHcCCceEEEEEecC------ChhhHHHHHHHHHcCCCcc
Q 011562 127 EAGG--NCNVAIAAARLGLDCVTIGHVGN------EIYGRFLLDVLQDEGIGMV 172 (483)
Q Consensus 127 ~GGg--~~NvA~~larLG~~v~lig~vG~------D~~g~~i~~~L~~~gId~~ 172 (483)
.||| ++=.|..++++|.++.++..-.. ....+.+.+.|++.||+..
T Consensus 5 iGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 5 IGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp ESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEE
T ss_pred ECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 3666 67899999999999999975442 2357778899999998864
No 105
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=63.04 E-value=20 Score=34.50 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=23.8
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcC
Q 011562 225 AEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDP 270 (483)
Q Consensus 225 ~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~ 270 (483)
+.+....+++|+|+++|-+ +....+...+.+ |+..|.+..+|+
T Consensus 52 ~~l~~a~~r~D~vI~tGGL-GPT~DDiT~e~v--Aka~g~~lv~~~ 94 (255)
T COG1058 52 EALREASERADVVITTGGL-GPTHDDLTAEAV--AKALGRPLVLDE 94 (255)
T ss_pred HHHHHHHhCCCEEEECCCc-CCCccHhHHHHH--HHHhCCCcccCH
Confidence 4444555668888888643 233334444443 344566777664
No 106
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=58.14 E-value=1.5e+02 Score=28.96 Aligned_cols=81 Identities=16% Similarity=0.233 Sum_probs=50.8
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEc-----CHHHHHHhh
Q 011562 235 KVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLL-----TSDEAESLT 309 (483)
Q Consensus 235 ~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~-----N~~Ea~~l~ 309 (483)
..|.++| .-+-+.++.+.++++.+++.|..+.++.++.. . .+.+..+++..|++.+ +.+....+.
T Consensus 127 ~~V~~sG-GEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~---~------~~~~~~ll~~~d~~~isl~~~~~~~~~~~~ 196 (295)
T TIGR02494 127 GGVTLSG-GEPLLQPEFALALLQACHERGIHTAVETSGFT---P------WETIEKVLPYVDLFLFDIKHLDDERHKEVT 196 (295)
T ss_pred CcEEeeC-cchhchHHHHHHHHHHHHHcCCcEeeeCCCCC---C------HHHHHHHHhhCCEEEEeeccCChHHHHHHh
Confidence 5677776 22234566778999999999999999887642 1 1345566666776543 455556666
Q ss_pred CCC--CHHHHHHHHHHcC
Q 011562 310 GLR--NPITAGQELLRKG 325 (483)
Q Consensus 310 g~~--~~~~~~~~l~~~g 325 (483)
|.. ...+.++.|.+.+
T Consensus 197 g~~~~~vl~~i~~l~~~~ 214 (295)
T TIGR02494 197 GVDNEPILENLEALAAAG 214 (295)
T ss_pred CCChHHHHHHHHHHHhCC
Confidence 653 2344555566654
No 107
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=57.54 E-value=18 Score=24.98 Aligned_cols=28 Identities=36% Similarity=0.563 Sum_probs=25.1
Q ss_pred EcCHHHHHHhhCCCCHHHHHHHHHHcCC
Q 011562 299 LLTSDEAESLTGLRNPITAGQELLRKGL 326 (483)
Q Consensus 299 ~~N~~Ea~~l~g~~~~~~~~~~l~~~g~ 326 (483)
+++.+|+..|+|.......++.|.+.|+
T Consensus 2 fLT~~El~elTG~k~~~~Q~~~L~~~Gi 29 (47)
T PF13986_consen 2 FLTDEELQELTGYKRPSKQIRWLRRNGI 29 (47)
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHCCC
Confidence 4688999999999999999999999986
No 108
>PF06626 DUF1152: Protein of unknown function (DUF1152); InterPro: IPR010581 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=55.74 E-value=2.2e+02 Score=28.18 Aligned_cols=87 Identities=22% Similarity=0.281 Sum_probs=56.9
Q ss_pred EEECCceeEEEecCCCCCCCCh--hhhhH--HhhhhccCCCCCccccCCc--HHHHHHHHHHcCCceEEEE-EecCChhh
Q 011562 85 ATLGNLCVDIVLNVPQLPPPSR--DARKA--YMDQLSASPPDKQYWEAGG--NCNVAIAAARLGLDCVTIG-HVGNEIYG 157 (483)
Q Consensus 85 lviG~~~iD~~~~v~~~p~~~~--~~~~~--~~~~~~~~~~~~~~~~GGg--~~NvA~~larLG~~v~lig-~vG~D~~g 157 (483)
.++|+..++.++ +|..|.|-. ..+.. ..+.+....+......||. -...|..+..+|.++..+. ..|-....
T Consensus 28 ~~lg~~~WeR~v-~Dp~PGP~~~~~~~~~~~i~~~~~~v~~~s~~~r~g~~~~pqla~~~~~l~~~v~~~d~~~Gv~~l~ 106 (297)
T PF06626_consen 28 VVLGSVVWERYV-VDPVPGPRPLEEFRGAEWINPHLALVTPDSYAIRGGRFVEPQLARVLRALGEPVYAFDPTGGVQGLA 106 (297)
T ss_pred eEEEEeeeEeee-cCCCCCCcCHHHhccceeecCceEEeCCcccccCCCceehhHHHHHHHhcCCcEEEECCCCCcHHHH
Confidence 578999999987 566665422 11110 0011222223444444553 4578889999999998887 56777788
Q ss_pred HHHHHHHHHcCCCcc
Q 011562 158 RFLLDVLQDEGIGMV 172 (483)
Q Consensus 158 ~~i~~~L~~~gId~~ 172 (483)
+.+.+..++.++|..
T Consensus 107 ~al~~l~~~~~iD~I 121 (297)
T PF06626_consen 107 RALRELAEKLGIDAI 121 (297)
T ss_pred HHHHHHHHHcCCCEE
Confidence 888888899999874
No 109
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=54.08 E-value=1.4e+02 Score=30.81 Aligned_cols=48 Identities=21% Similarity=0.135 Sum_probs=32.9
Q ss_pred HHHhhcC-CcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCC
Q 011562 227 VKTAIKH-SKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRG 274 (483)
Q Consensus 227 ~~~~l~~-~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~ 274 (483)
++..+++ .++|++..-.-+-.....+..+.+.|+++|+.|++|-...+
T Consensus 155 ~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~ 203 (409)
T KOG0053|consen 155 ILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGS 203 (409)
T ss_pred HHHhhccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCc
Confidence 3334444 88999985432223334678889999999999999985443
No 110
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=53.76 E-value=57 Score=29.41 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=50.8
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHH
Q 011562 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAE 306 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~ 306 (483)
+++.+...|+. ++.+.+..+-+..+++|+.|+.||.+.+ ..-+..+.+.++.+-..++...++.
T Consensus 22 d~~~I~T~Gs~---i~~~~i~~i~~~~~~rgVIIfTDpD~~G-------ekIRk~i~~~vp~~khafi~~~~a~ 85 (174)
T TIGR00334 22 DVDVIETNGSA---LKDETINLIKKAQKKQGVIILTDPDFPG-------EKIRKKIEQHLPGYENCFIPKHLAK 85 (174)
T ss_pred CceEEEECCCc---cCHHHHHHHHHHhhcCCEEEEeCCCCch-------HHHHHHHHHHCCCCeEEeeeHHhcC
Confidence 47888888864 5677888887888889999999997655 3457778888888888888888875
No 111
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=53.71 E-value=95 Score=31.61 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=69.0
Q ss_pred HHHHHHHHcCCceEEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCC
Q 011562 133 NVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFS 212 (483)
Q Consensus 133 NvA~~larLG~~v~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~ 212 (483)
++-..+++-|-.+.--+.+=.. .-..+...|++.||++.++ |.+
T Consensus 92 ~ai~~la~aGD~iVss~~LYGG-T~~lf~~tl~~~Gi~v~fv-----------------------d~~------------ 135 (426)
T COG2873 92 YAILNLAGAGDNIVSSSKLYGG-TYNLFSHTLKRLGIEVRFV-----------------------DPD------------ 135 (426)
T ss_pred HHHHHhccCCCeeEeeccccCc-hHHHHHHHHHhcCcEEEEe-----------------------CCC------------
Confidence 4444556667766655554333 2355677789999988665 221
Q ss_pred CChhhhhhhhccHHHHHh-hcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhh
Q 011562 213 KEPAFSWMNKLSAEVKTA-IKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYF 291 (483)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~-l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~l 291 (483)
.. +.+.+. -++.+.|++....-+....-.+..+.+.|+++|+++++|-......+ ++++
T Consensus 136 ---d~-------~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl----------~rP~ 195 (426)
T COG2873 136 ---DP-------ENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYL----------CRPI 195 (426)
T ss_pred ---CH-------HHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCccee----------cchh
Confidence 00 111111 24677888775543444444577888999999999999986543322 2345
Q ss_pred hcCCCEEEcCH
Q 011562 292 LSTSDVLLLTS 302 (483)
Q Consensus 292 l~~~dil~~N~ 302 (483)
--.+||++-+.
T Consensus 196 ~hGADIVvHS~ 206 (426)
T COG2873 196 EHGADIVVHSA 206 (426)
T ss_pred hcCCCEEEEee
Confidence 55788887543
No 112
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=48.54 E-value=2.2e+02 Score=29.64 Aligned_cols=129 Identities=16% Similarity=0.248 Sum_probs=74.0
Q ss_pred HHHHHHHH--cC-CceEEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCccccccc
Q 011562 133 NVAIAAAR--LG-LDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRA 209 (483)
Q Consensus 133 NvA~~lar--LG-~~v~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~ 209 (483)
.+|+-+++ +| ..-.=+-.+|-.+.|..+...|.+.|+....|. +.+-++.
T Consensus 163 saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~Ia----------------------NRT~erA----- 215 (414)
T COG0373 163 SAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIA----------------------NRTLERA----- 215 (414)
T ss_pred HHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEE----------------------cCCHHHH-----
Confidence 45555544 45 454555667777899999999999998654331 1111111
Q ss_pred CCCCChhhhhhhhc------cHHHHHhhcCCcEEEEecCCC-CCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCCh
Q 011562 210 DFSKEPAFSWMNKL------SAEVKTAIKHSKVLFCNGYGF-DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTP 282 (483)
Q Consensus 210 ~~~~~~~~~~~~~l------~~~~~~~l~~~~~v~isG~~~-~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~ 282 (483)
.++...+ .+++...+..+|+|+.+-..+ .-+..+.+.+.++.-+. .+++|.+-+. ++.
T Consensus 216 -------~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~---~livDiavPR-die---- 280 (414)
T COG0373 216 -------EELAKKLGAEAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKR---LLIVDIAVPR-DVE---- 280 (414)
T ss_pred -------HHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccC---eEEEEecCCC-CCC----
Confidence 1111111 145567789999999884333 44555555555543222 6899996432 121
Q ss_pred HHHHHHHhhhcCCCEEEcCHHHHHHhh
Q 011562 283 EEQRALSYFLSTSDVLLLTSDEAESLT 309 (483)
Q Consensus 283 ~~~~~l~~ll~~~dil~~N~~Ea~~l~ 309 (483)
...-...++...|.++++.+.
T Consensus 281 ------~~v~~l~~v~l~~iDDL~~iv 301 (414)
T COG0373 281 ------PEVGELPNVFLYTIDDLEEIV 301 (414)
T ss_pred ------ccccCcCCeEEEehhhHHHHH
Confidence 123334567777778877764
No 113
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=48.46 E-value=3.8e+02 Score=28.89 Aligned_cols=36 Identities=31% Similarity=0.360 Sum_probs=24.5
Q ss_pred HHHHHHHcCCceEEEEEecCC-hhhHHHHHHHHHcCCCc
Q 011562 134 VAIAAARLGLDCVTIGHVGNE-IYGRFLLDVLQDEGIGM 171 (483)
Q Consensus 134 vA~~larLG~~v~lig~vG~D-~~g~~i~~~L~~~gId~ 171 (483)
+|..+|..|.+|...|.-+-. ..|. .+.|+..||+.
T Consensus 293 aa~v~A~~Gv~V~kHG~r~~ss~~Gs--advlealGi~~ 329 (531)
T PRK09522 293 SAFVAAACGLKVAKHGNRSVSSKSGS--SDLLAAFGINL 329 (531)
T ss_pred HHHHHHhCCCcEEEeCCCCCCCCccH--HHHHHHcCCCC
Confidence 456778889999888865533 1333 57777778765
No 114
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=47.83 E-value=68 Score=30.34 Aligned_cols=63 Identities=14% Similarity=0.237 Sum_probs=48.8
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHH-HcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEE----cCHHHHH
Q 011562 232 KHSKVLFCNGYGFDELSPALIISALEYAA-QVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLL----LTSDEAE 306 (483)
Q Consensus 232 ~~~~~v~isG~~~~~~~~~~~~~li~~a~-~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~----~N~~Ea~ 306 (483)
...|.+.+.|+. +...+.+.++++.++ ..++|+++.|+... .+.+++|.++ +|.....
T Consensus 40 ~GTDaImIGGS~--gvt~~~~~~~v~~ik~~~~lPvilfP~~~~---------------~is~~aDavff~svLNS~n~~ 102 (240)
T COG1646 40 AGTDAIMIGGSD--GVTEENVDNVVEAIKERTDLPVILFPGSPS---------------GISPYADAVFFPSVLNSDNPY 102 (240)
T ss_pred cCCCEEEECCcc--cccHHHHHHHHHHHHhhcCCCEEEecCChh---------------ccCccCCeEEEEEEecCCCcc
Confidence 568999999874 677788889999888 89999999997532 4566788664 3777777
Q ss_pred HhhCC
Q 011562 307 SLTGL 311 (483)
Q Consensus 307 ~l~g~ 311 (483)
++.|.
T Consensus 103 ~i~ga 107 (240)
T COG1646 103 WIVGA 107 (240)
T ss_pred cccch
Confidence 77764
No 115
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=47.43 E-value=2.2e+02 Score=26.67 Aligned_cols=36 Identities=8% Similarity=-0.016 Sum_probs=23.5
Q ss_pred HHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEE
Q 011562 228 KTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFF 268 (483)
Q Consensus 228 ~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~ 268 (483)
.+.++++|+|+.+ .-..+.-..+-+.|++++++++.
T Consensus 106 ~~~~~~~DvVi~~-----~d~~~~r~~l~~~~~~~~ip~i~ 141 (228)
T cd00757 106 EELIAGYDLVLDC-----TDNFATRYLINDACVKLGKPLVS 141 (228)
T ss_pred HHHHhCCCEEEEc-----CCCHHHHHHHHHHHHHcCCCEEE
Confidence 3456778988876 22344555677778888887764
No 116
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=45.03 E-value=1.4e+02 Score=27.86 Aligned_cols=90 Identities=19% Similarity=0.132 Sum_probs=54.4
Q ss_pred hcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEc--CHHHHHHh
Q 011562 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLL--TSDEAESL 308 (483)
Q Consensus 231 l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~--N~~Ea~~l 308 (483)
-..+||+.+.| -.+.+++...++.|++.|..+.+|.-.. |+ ..+..+.++. -.+|++.. +.+. +.
T Consensus 78 ~aGAd~~tV~g----~A~~~TI~~~i~~A~~~~~~v~iDl~~~----~~-~~~~~~~l~~--~gvd~~~~H~g~D~-q~- 144 (217)
T COG0269 78 EAGADWVTVLG----AADDATIKKAIKVAKEYGKEVQIDLIGV----WD-PEQRAKWLKE--LGVDQVILHRGRDA-QA- 144 (217)
T ss_pred HcCCCEEEEEe----cCCHHHHHHHHHHHHHcCCeEEEEeecC----CC-HHHHHHHHHH--hCCCEEEEEecccH-hh-
Confidence 36899999986 4567899999999999999999998321 11 1222223333 35666654 4332 22
Q ss_pred hCCCC---HHHHHHHHHHcCCCccEEEEEeC
Q 011562 309 TGLRN---PITAGQELLRKGLRTKWVVVKMG 336 (483)
Q Consensus 309 ~g~~~---~~~~~~~l~~~g~~~~~vVvT~G 336 (483)
.|... ..+..+++.+.|. .+-|+-|
T Consensus 145 ~G~~~~~~~l~~ik~~~~~g~---~vAVaGG 172 (217)
T COG0269 145 AGKSWGEDDLEKIKKLSDLGA---KVAVAGG 172 (217)
T ss_pred cCCCccHHHHHHHHHhhccCc---eEEEecC
Confidence 55543 2445556666553 3556544
No 117
>PRK05967 cystathionine beta-lyase; Provisional
Probab=44.16 E-value=2.9e+02 Score=28.46 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=31.9
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCC
Q 011562 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPR 273 (483)
Q Consensus 232 ~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~ 273 (483)
++.++|+++.-.-+......+.++.+.|+++|+.+++|-.+.
T Consensus 148 ~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 148 PNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred cCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 357788888433234566788999999999999999998643
No 118
>PRK06739 pyruvate kinase; Validated
Probab=41.88 E-value=3.9e+02 Score=27.13 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=51.8
Q ss_pred HHHHhhcCCcEEEEe-cCCCCCCCH----HHHHHHHHHHHHcCCeEEEcCCCCCCCCCCC---ChHHHHHHHhhhcCCCE
Q 011562 226 EVKTAIKHSKVLFCN-GYGFDELSP----ALIISALEYAAQVGTSIFFDPGPRGKSLSSG---TPEEQRALSYFLSTSDV 297 (483)
Q Consensus 226 ~~~~~l~~~~~v~is-G~~~~~~~~----~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~---~~~~~~~l~~ll~~~di 297 (483)
.+.+.+..+|.+.+. |-+-.+++. ....++++.|++.|.+|++-.+--..+.... ..+.-+.....+..+|-
T Consensus 222 nl~eI~~~sDgimVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~ 301 (352)
T PRK06739 222 NFQDICKEADGIMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNA 301 (352)
T ss_pred HHHHHHHhcCEEEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcE
Confidence 345567788999888 665555554 4667899999999999998664322211111 22333444566778888
Q ss_pred EEcCHHHH
Q 011562 298 LLLTSDEA 305 (483)
Q Consensus 298 l~~N~~Ea 305 (483)
+.++.+-+
T Consensus 302 vMLS~ETA 309 (352)
T PRK06739 302 VMLSAESA 309 (352)
T ss_pred EEEccccc
Confidence 88876543
No 119
>PRK08114 cystathionine beta-lyase; Provisional
Probab=41.56 E-value=2.2e+02 Score=29.41 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=26.7
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHHc--CCeEEEcCCCC
Q 011562 233 HSKVLFCNGYGFDELSPALIISALEYAAQV--GTSIFFDPGPR 273 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~~~~~~li~~a~~~--g~~v~~D~~~~ 273 (483)
+.++|++....-......-+.++.+.|+++ |+.+++|-...
T Consensus 147 ~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a 189 (395)
T PRK08114 147 NTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWA 189 (395)
T ss_pred CceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCc
Confidence 467888884332222223467788888887 49999998643
No 120
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=41.27 E-value=2.6e+02 Score=26.40 Aligned_cols=84 Identities=13% Similarity=0.196 Sum_probs=49.7
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEc-----CHHHHHHhh
Q 011562 235 KVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLL-----TSDEAESLT 309 (483)
Q Consensus 235 ~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~-----N~~Ea~~l~ 309 (483)
+.|.++|- -+-+..+.+.++++.+++.|..+.++.++.... ..+.+..+++.+|.+.+ +++....+.
T Consensus 72 ~~V~~sGG-EPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~~-------~~~~~~~ll~~~d~v~islk~~~~e~~~~~~ 143 (246)
T PRK11145 72 GGVTASGG-EAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR-------YDPVIDELLDVTDLVMLDLKQMNDEIHQNLV 143 (246)
T ss_pred CeEEEeCc-cHhcCHHHHHHHHHHHHHcCCCEEEECCCCCCc-------chHHHHHHHHhCCEEEECCCcCChhhccccc
Confidence 46777762 123456777899999999999999988764310 12345566667786544 333445566
Q ss_pred CCCC--HHHHHHHHHHcCC
Q 011562 310 GLRN--PITAGQELLRKGL 326 (483)
Q Consensus 310 g~~~--~~~~~~~l~~~g~ 326 (483)
|... ..+..+.+.+.|.
T Consensus 144 g~~~~~~l~~i~~l~~~g~ 162 (246)
T PRK11145 144 GVSNHRTLEFARYLAKRNQ 162 (246)
T ss_pred CCChHHHHHHHHHHHhCCC
Confidence 6432 2333445555543
No 121
>PTZ00300 pyruvate kinase; Provisional
Probab=41.11 E-value=3.8e+02 Score=28.29 Aligned_cols=140 Identities=11% Similarity=0.096 Sum_probs=81.0
Q ss_pred HHHcCCceEEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhh
Q 011562 138 AARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAF 217 (483)
Q Consensus 138 larLG~~v~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~ 217 (483)
+..+|.+...++.|-+-+.-+.+++.+.+.|-++.. +.-++. ...
T Consensus 156 ald~gvd~I~~SfVrsaeDv~~vr~~l~~~~~~~~I--------------------iaKIEt--------------~ea- 200 (454)
T PTZ00300 156 GVEQGVDMIFASFIRSAEQVGEVRKALGAKGGDIMI--------------------ICKIEN--------------HQG- 200 (454)
T ss_pred HHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCceE--------------------EEEECC--------------HHH-
Confidence 335788888888888766677777777553321111 111221 001
Q ss_pred hhhhhccHHHHHhhcCCcEEEEe-cCCCCCCC----HHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCC---ChHHHHHHH
Q 011562 218 SWMNKLSAEVKTAIKHSKVLFCN-GYGFDELS----PALIISALEYAAQVGTSIFFDPGPRGKSLSSG---TPEEQRALS 289 (483)
Q Consensus 218 ~~~~~l~~~~~~~l~~~~~v~is-G~~~~~~~----~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~---~~~~~~~l~ 289 (483)
.+.+.+.+..+|.+++. |-+-.+++ +....++++.|+++|+++++-.+--..+.... ..+.-+...
T Consensus 201 ------v~nldeI~~~~DgImVaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVan 274 (454)
T PTZ00300 201 ------VQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVAN 274 (454)
T ss_pred ------HHhHHHHHHhCCEEEEecchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHH
Confidence 13344556889999988 43322333 34777889999999999998664222111111 223344456
Q ss_pred hhhcCCCEEEcCHHHHHHhhCCCCHHHHHHHHH
Q 011562 290 YFLSTSDVLLLTSDEAESLTGLRNPITAGQELL 322 (483)
Q Consensus 290 ~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~~l~ 322 (483)
.++..+|-+.++.+-+. |. -+.++.+.+.
T Consensus 275 Av~dG~DavMLS~ETA~---G~-yP~eaV~~m~ 303 (454)
T PTZ00300 275 AVFNGADCVMLSGETAK---GK-YPNEVVQYMA 303 (454)
T ss_pred HHHhCCcEEEEechhcC---CC-CHHHHHHHHH
Confidence 67889999998776543 22 3445544444
No 122
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=40.23 E-value=3.1e+02 Score=26.37 Aligned_cols=80 Identities=19% Similarity=0.104 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcC------HHHHHHhh--CC------
Q 011562 246 ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLT------SDEAESLT--GL------ 311 (483)
Q Consensus 246 ~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N------~~Ea~~l~--g~------ 311 (483)
+...+-+..+.+.+++.|++++-++-. .+.++.+.+++|++++- .+=++++. |.
T Consensus 62 G~G~~gl~~L~~~~~~~Gl~~~Tev~d------------~~~v~~~~e~vdilqIgs~~~~n~~LL~~va~tgkPVilk~ 129 (250)
T PRK13397 62 GLGLQGIRYLHEVCQEFGLLSVSEIMS------------ERQLEEAYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKR 129 (250)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeeCC------------HHHHHHHHhcCCEEEECcccccCHHHHHHHHccCCeEEEeC
Confidence 445577888888999999999988732 22334455679999863 33233332 11
Q ss_pred ------CCHHHHHHHHHHcCCCccEEEEEe-CCCc
Q 011562 312 ------RNPITAGQELLRKGLRTKWVVVKM-GPRG 339 (483)
Q Consensus 312 ------~~~~~~~~~l~~~g~~~~~vVvT~-G~~G 339 (483)
.++..+++++.+.|. +.+++.. |-.+
T Consensus 130 G~~~t~~e~~~A~e~i~~~Gn--~~i~L~eRg~~~ 162 (250)
T PRK13397 130 GLMATIEEYLGALSYLQDTGK--SNIILCERGVRG 162 (250)
T ss_pred CCCCCHHHHHHHHHHHHHcCC--CeEEEEccccCC
Confidence 145667788887775 4455554 5433
No 123
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=38.77 E-value=1e+02 Score=29.22 Aligned_cols=62 Identities=13% Similarity=0.249 Sum_probs=37.5
Q ss_pred hcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEE----cCHHHHH
Q 011562 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLL----LTSDEAE 306 (483)
Q Consensus 231 l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~----~N~~Ea~ 306 (483)
-...|.+++.|+. .+...+.+..+++.. .++|+++.|+... .+.+.+|.++ +|-....
T Consensus 30 ~~gtDai~VGGS~-~~~~~d~vv~~ik~~--~~lPvilfPg~~~---------------~vs~~aDail~~svlNs~n~~ 91 (230)
T PF01884_consen 30 ESGTDAIIVGGSD-TGVTLDNVVALIKRV--TDLPVILFPGSPS---------------QVSPGADAILFPSVLNSRNPY 91 (230)
T ss_dssp CTT-SEEEEE-ST-HCHHHHHHHHHHHHH--SSS-EEEETSTCC---------------G--TTSSEEEEEEETTBSSTT
T ss_pred hcCCCEEEECCCC-CccchHHHHHHHHhc--CCCCEEEeCCChh---------------hcCcCCCEEEEEEEecCCCcc
Confidence 3789999999976 344445555555544 8899999997532 4567788654 3666655
Q ss_pred HhhC
Q 011562 307 SLTG 310 (483)
Q Consensus 307 ~l~g 310 (483)
++.|
T Consensus 92 ~iig 95 (230)
T PF01884_consen 92 WIIG 95 (230)
T ss_dssp TTTH
T ss_pred hHhh
Confidence 5544
No 124
>PLN02762 pyruvate kinase complex alpha subunit
Probab=38.58 E-value=5.3e+02 Score=27.67 Aligned_cols=82 Identities=11% Similarity=0.095 Sum_probs=54.4
Q ss_pred HHHHHhhcCCcEEEEe-cCCCCCCCH----HHHHHHHHHHHHcCCeEEEcCCCCCCCCCCC---ChHHHHHHHhhhcCCC
Q 011562 225 AEVKTAIKHSKVLFCN-GYGFDELSP----ALIISALEYAAQVGTSIFFDPGPRGKSLSSG---TPEEQRALSYFLSTSD 296 (483)
Q Consensus 225 ~~~~~~l~~~~~v~is-G~~~~~~~~----~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~---~~~~~~~l~~ll~~~d 296 (483)
+.+.+.+..+|.+.+. |-+-.+++. .....+++.|++.|.+|++-.+--..+.... ..+.-+....++..+|
T Consensus 260 ~nl~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtD 339 (509)
T PLN02762 260 KNLEEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRAD 339 (509)
T ss_pred HHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHHhCCC
Confidence 3455677889999988 655556664 3667889999999999998654222111111 2334444566788999
Q ss_pred EEEcCHHHHH
Q 011562 297 VLLLTSDEAE 306 (483)
Q Consensus 297 il~~N~~Ea~ 306 (483)
-+.++.+-+.
T Consensus 340 avMLSgETA~ 349 (509)
T PLN02762 340 ALMLSGESAM 349 (509)
T ss_pred EEEEcchhcC
Confidence 9999876544
No 125
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=37.15 E-value=90 Score=27.81 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=40.9
Q ss_pred ccCCc-HHHHHHHHHHcCCceEEEEE-ecCChhhHHHHHHHHHcCCCccceee
Q 011562 126 WEAGG-NCNVAIAAARLGLDCVTIGH-VGNEIYGRFLLDVLQDEGIGMVGMSE 176 (483)
Q Consensus 126 ~~GGg-~~NvA~~larLG~~v~lig~-vG~D~~g~~i~~~L~~~gId~~~v~~ 176 (483)
+.||+ ..=.|..|.+||.++.+++. +|=-+.++..++.-+..|.+...++.
T Consensus 7 fSGGKDSSLaA~iL~klgyev~LVTvnFGv~d~~k~A~~tA~~lgF~h~vl~L 59 (198)
T COG2117 7 FSGGKDSSLAALILDKLGYEVELVTVNFGVLDSWKYARETAAILGFPHEVLQL 59 (198)
T ss_pred ecCCCchhHHHHHHHHhCCCcEEEEEEeccccchhhHHHHHHHhCCCcceecc
Confidence 45787 66799999999999999995 77544788888888888888876643
No 126
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=36.95 E-value=4e+02 Score=25.86 Aligned_cols=178 Identities=16% Similarity=0.203 Sum_probs=97.2
Q ss_pred EEEecCChhhHHHHHHHHHcC-CCccceeecCCCCccccCcccceeEEEEECCCCCcc--cccccCCCCChhhhhhhhcc
Q 011562 148 IGHVGNEIYGRFLLDVLQDEG-IGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHG--FCSRADFSKEPAFSWMNKLS 224 (483)
Q Consensus 148 ig~vG~D~~g~~i~~~L~~~g-Id~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~--~~~~~~~~~~~~~~~~~~l~ 224 (483)
|+.+|....|+.+..-|.+.| ++-..|.. .+++.+.. +....+.. ..
T Consensus 4 IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v--------------------~~~~~e~~~~l~~~~g~~----------~~ 53 (266)
T COG0345 4 IGFIGAGNMGEAILSGLLKSGALPPEEIIV--------------------TNRSEEKRAALAAEYGVV----------TT 53 (266)
T ss_pred EEEEccCHHHHHHHHHHHhcCCCCcceEEE--------------------eCCCHHHHHHHHHHcCCc----------cc
Confidence 788898889999999999888 45344422 22221110 10000000 01
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHH---cCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEE--E
Q 011562 225 AEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQ---VGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVL--L 299 (483)
Q Consensus 225 ~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~---~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil--~ 299 (483)
.+.......+|+|+++ +-|..+.+++...+. ....|++-.+-. .+.++.+++..-++ .
T Consensus 54 ~~~~~~~~~advv~La------vKPq~~~~vl~~l~~~~~~~lvISiaAGv~-----------~~~l~~~l~~~~vvR~M 116 (266)
T COG0345 54 TDNQEAVEEADVVFLA------VKPQDLEEVLSKLKPLTKDKLVISIAAGVS-----------IETLERLLGGLRVVRVM 116 (266)
T ss_pred CcHHHHHhhCCEEEEE------eChHhHHHHHHHhhcccCCCEEEEEeCCCC-----------HHHHHHHcCCCceEEeC
Confidence 2233456789999997 345566777776662 334455544321 34566666544444 3
Q ss_pred cCHHHHHH--hhCC---C----CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccc-cccCCCCchHHHH
Q 011562 300 LTSDEAES--LTGL---R----NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKV-NVTDTVGCGDSFV 369 (483)
Q Consensus 300 ~N~~Ea~~--l~g~---~----~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v-~vvDttGAGDaF~ 369 (483)
||-.-.-. .++. . +..+.+..|++. + |..++++-... -+...+|+|-+|+
T Consensus 117 PNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~-~-------------------G~v~~v~E~~~da~TaisGSgPAyv 176 (266)
T COG0345 117 PNTPALVGAGVTAISANANVSEEDKAFVEALLSA-V-------------------GKVVEVEESLMDAVTALSGSGPAYV 176 (266)
T ss_pred CChHHHHcCcceeeecCccCCHHHHHHHHHHHHh-c-------------------CCeEEechHHhhHHHHHhcCCHHHH
Confidence 55432211 0100 0 122244445443 1 22344441112 2456789999999
Q ss_pred HHHHHHH-----HcCCCHHHHHHHHHHH
Q 011562 370 AAVAFGF-----IHNMPTVNTLTIANAV 392 (483)
Q Consensus 370 Ag~l~gl-----~~g~~l~~al~~A~aa 392 (483)
.-|+-++ ..|.+.++|.+++...
T Consensus 177 ~~~iEal~~agv~~Gl~~~~A~~l~~~t 204 (266)
T COG0345 177 FLFIEALADAGVRLGLPREEARELAAQT 204 (266)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9888655 4689999999888754
No 127
>PRK09028 cystathionine beta-lyase; Provisional
Probab=36.78 E-value=2.5e+02 Score=28.96 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=31.5
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCC
Q 011562 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPR 273 (483)
Q Consensus 232 ~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~ 273 (483)
++.++|+++.-.-+......+.++.+.|+++|+.+++|-.+.
T Consensus 145 ~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 145 PNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred cCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 457888888433333445678899999999999999998653
No 128
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=36.16 E-value=3e+02 Score=25.30 Aligned_cols=36 Identities=11% Similarity=0.031 Sum_probs=21.8
Q ss_pred HHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEE
Q 011562 228 KTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFF 268 (483)
Q Consensus 228 ~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~ 268 (483)
.+.++++|+|+.+ .-..+.-..+-+.|++.+++++.
T Consensus 106 ~~~~~~~D~Vi~~-----~d~~~~r~~l~~~~~~~~ip~i~ 141 (202)
T TIGR02356 106 ELLINNVDLVLDC-----TDNFATRYLINDACVALGTPLIS 141 (202)
T ss_pred HHHHhCCCEEEEC-----CCCHHHHHHHHHHHHHcCCCEEE
Confidence 3456778877655 12234445566677777777654
No 129
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=35.32 E-value=2.2e+02 Score=26.61 Aligned_cols=55 Identities=22% Similarity=0.114 Sum_probs=36.1
Q ss_pred hhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHHHHHHcCCCc
Q 011562 115 QLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGM 171 (483)
Q Consensus 115 ~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~~L~~~gId~ 171 (483)
.+...+++.....|.|..+.|..+|++..+|.-+=.++ ...+..++.|+..|++.
T Consensus 67 ~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~--~L~~~A~~~L~~lg~~n 121 (209)
T COG2518 67 LLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIE--ELAEQARRNLETLGYEN 121 (209)
T ss_pred HhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcH--HHHHHHHHHHHHcCCCc
Confidence 33444445555567666667777888877665555543 46677788899988854
No 130
>PHA00438 hypothetical protein
Probab=35.10 E-value=30 Score=26.48 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=14.8
Q ss_pred CCCchHHHHHHHHHHHH
Q 011562 361 TVGCGDSFVAAVAFGFI 377 (483)
Q Consensus 361 ttGAGDaF~Ag~l~gl~ 377 (483)
..|..++|++||++|+-
T Consensus 46 ~~G~SE~~IaGfl~Gl~ 62 (81)
T PHA00438 46 QAGYSEAFIAGFLAGLQ 62 (81)
T ss_pred HcCCcHHHHHHHHHHHH
Confidence 36999999999999984
No 131
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=34.76 E-value=3e+02 Score=27.83 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=42.1
Q ss_pred CCcEEEEecCCCCCCCH-HHHHHHHHHHHH------cCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHH
Q 011562 233 HSKVLFCNGYGFDELSP-ALIISALEYAAQ------VGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEA 305 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~-~~~~~li~~a~~------~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea 305 (483)
+.|+|+++|-.+.+... +.-.+=++..+. .|+++-++.++.. ...-.......+++++|-+=+|+.|+
T Consensus 238 qPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlElaS~~-----~~~l~~~i~h~VlPyVdSLGlNEQEL 312 (478)
T KOG4184|consen 238 QPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELASMT-----NRELMSSIVHQVLPYVDSLGLNEQEL 312 (478)
T ss_pred CCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHhHHH-----HHHHHHHHHHHhhhhccccCCCHHHH
Confidence 57999999987644332 222222222221 4556655554321 11122334456789999999999999
Q ss_pred HHhh
Q 011562 306 ESLT 309 (483)
Q Consensus 306 ~~l~ 309 (483)
..|.
T Consensus 313 ~fL~ 316 (478)
T KOG4184|consen 313 LFLT 316 (478)
T ss_pred HHHH
Confidence 8774
No 132
>COG4034 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.70 E-value=4.4e+02 Score=25.64 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=53.7
Q ss_pred EECCceeEEEecCCCCCCC--Chhhhh--HHhhhhccCCCCCccccCCc--HHHHHHHHHHcCCceEEEEEecCC-hhhH
Q 011562 86 TLGNLCVDIVLNVPQLPPP--SRDARK--AYMDQLSASPPDKQYWEAGG--NCNVAIAAARLGLDCVTIGHVGNE-IYGR 158 (483)
Q Consensus 86 viG~~~iD~~~~v~~~p~~--~~~~~~--~~~~~~~~~~~~~~~~~GGg--~~NvA~~larLG~~v~lig~vG~D-~~g~ 158 (483)
+.|++.+|.++. |..|.| -...+. ...+.+....+..+...||- ..++.+++.+||.++..+...++- ...+
T Consensus 43 vlGsvvWER~Vv-DP~PGP~p~~~i~g~~~i~e~~~i~~~~t~~~rg~~~~~pqi~raaralg~e~v~v~~~~gv~gl~e 121 (328)
T COG4034 43 VLGSVVWERYVV-DPEPGPRPPDEIRGVVRINEGLYIANGRTRAERGGRRVKPQIVRAARALGKEAVAVDLVDGVRGLAE 121 (328)
T ss_pred ccccceeeEEee-CCCCCCCChHHhhhhhhhcccceeecccchhhcCCceecHHHHHHHHHhCceeEEEeccCCcccHHH
Confidence 779999999985 333322 111111 12223333334455555665 469999999999988887776643 2456
Q ss_pred HHHHHHHHcCCCcc
Q 011562 159 FLLDVLQDEGIGMV 172 (483)
Q Consensus 159 ~i~~~L~~~gId~~ 172 (483)
-++...+++|+|..
T Consensus 122 ~lk~lv~~~~id~I 135 (328)
T COG4034 122 GLKALVEKEGIDLI 135 (328)
T ss_pred HHHHHHHhhCccEE
Confidence 67777788898863
No 133
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=33.81 E-value=1e+02 Score=26.71 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCceEEEEEecCChhhHHHHHHHHH
Q 011562 131 NCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQD 166 (483)
Q Consensus 131 ~~NvA~~larLG~~v~lig~vG~D~~g~~i~~~L~~ 166 (483)
+...+..+.++|.++...+.+++|. +.|.+.+++
T Consensus 29 ~~~l~~~l~~~G~~v~~~~~v~Dd~--~~i~~~l~~ 62 (144)
T TIGR00177 29 GPLLAALLEEAGFNVSRLGIVPDDP--EEIREILRK 62 (144)
T ss_pred HHHHHHHHHHCCCeEEEEeecCCCH--HHHHHHHHH
Confidence 3445566666677777777777663 334444443
No 134
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=33.78 E-value=4.6e+02 Score=27.42 Aligned_cols=41 Identities=10% Similarity=0.161 Sum_probs=27.1
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCC
Q 011562 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGP 272 (483)
Q Consensus 232 ~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~ 272 (483)
++.++|++.....+....-.+.++.+.|+++|+.+++|...
T Consensus 146 ~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~ 186 (432)
T PRK06702 146 DKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTL 186 (432)
T ss_pred cCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCC
Confidence 34667777632211111113788899999999999999964
No 135
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=33.70 E-value=4e+02 Score=24.91 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=57.6
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcC-CCEEEc-----CHHHHH
Q 011562 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLST-SDVLLL-----TSDEAE 306 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~-~dil~~-----N~~Ea~ 306 (483)
.+|++=+. -....+.+.++++.+++.+.++++.-...... ...++....+...... +|++++ +..+..
T Consensus 92 ~~d~vDiE----l~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~t--p~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~ 165 (228)
T TIGR01093 92 GPDFVDIE----LFLPDDAVKELINIAKKGGTKIIMSYHDFQKT--PSWEEIVERLEKALSYGADIVKIAVMANSKEDVL 165 (228)
T ss_pred CCCEEEEE----ccCCHHHHHHHHHHHHHCCCEEEEeccCCCCC--CCHHHHHHHHHHHHHhCCCEEEEEeccCCHHHHH
Confidence 36888887 24456777888888889999998855322211 1123344555555554 899886 334433
Q ss_pred HhhCCCCHHHHHHHHHHcCCCccEEEEEeCCCcEEE
Q 011562 307 SLTGLRNPITAGQELLRKGLRTKWVVVKMGPRGSIL 342 (483)
Q Consensus 307 ~l~g~~~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~ 342 (483)
.+. +...++.+. ...+.+.+.+|+.|.+-
T Consensus 166 ~ll------~~~~~~~~~-~~~p~i~~~MG~~G~~S 194 (228)
T TIGR01093 166 TLL------EITNKVDEH-ADVPLITMSMGDRGKIS 194 (228)
T ss_pred HHH------HHHHHHHhc-CCCCEEEEeCCCCChhH
Confidence 332 233333322 23367899999999543
No 136
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=33.52 E-value=3.1e+02 Score=27.95 Aligned_cols=42 Identities=21% Similarity=0.117 Sum_probs=31.3
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCC
Q 011562 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPR 273 (483)
Q Consensus 232 ~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~ 273 (483)
++.++|+++.-.........+.++.+.|+++|+.+++|-...
T Consensus 134 ~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 134 PNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred CCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 356788887443334455678899999999999999998643
No 137
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=33.15 E-value=1.1e+02 Score=28.88 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=47.1
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEE----cCHHHHHH
Q 011562 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLL----LTSDEAES 307 (483)
Q Consensus 232 ~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~----~N~~Ea~~ 307 (483)
...|.+++.|+. +...+.+.++++..|+..+|+++-|+... .+.+++|.++ +|.....+
T Consensus 26 ~gtdai~vGGS~--~vt~~~~~~~v~~ik~~~lPvilfp~~~~---------------~i~~~aDa~l~~svlNs~~~~~ 88 (223)
T TIGR01768 26 SGTDAILIGGSQ--GVTYEKTDTLIEALRRYGLPIILFPSNPT---------------NVSRDADALFFPSVLNSDDPYW 88 (223)
T ss_pred cCCCEEEEcCCC--cccHHHHHHHHHHHhccCCCEEEeCCCcc---------------ccCcCCCEEEEEEeecCCCchH
Confidence 457999999874 56778888999999999999999886421 4567788654 36666666
Q ss_pred hhCC
Q 011562 308 LTGL 311 (483)
Q Consensus 308 l~g~ 311 (483)
+.|.
T Consensus 89 iig~ 92 (223)
T TIGR01768 89 IIGA 92 (223)
T ss_pred HHhH
Confidence 6653
No 138
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=32.47 E-value=1.1e+02 Score=29.15 Aligned_cols=74 Identities=12% Similarity=0.163 Sum_probs=51.8
Q ss_pred hcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEE----cCHHHHH
Q 011562 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLL----LTSDEAE 306 (483)
Q Consensus 231 l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~----~N~~Ea~ 306 (483)
....|.+++.|+. ++..+.+.++++..++..+|+++.|+... .+.+++|.++ +|.+...
T Consensus 30 ~~gtdai~vGGS~--~vt~~~~~~~v~~ik~~~lPvilfp~~~~---------------~i~~~aDa~l~~svlNs~~~~ 92 (232)
T PRK04169 30 ESGTDAIIVGGSD--GVTEENVDELVKAIKEYDLPVILFPGNIE---------------GISPGADAYLFPSVLNSRNPY 92 (232)
T ss_pred hcCCCEEEEcCCC--ccchHHHHHHHHHHhcCCCCEEEeCCCcc---------------ccCcCCCEEEEEEEecCCCcc
Confidence 3678999999974 56678888999998888899999886432 4566788664 3766666
Q ss_pred HhhCCCCHHHHHHHHHH
Q 011562 307 SLTGLRNPITAGQELLR 323 (483)
Q Consensus 307 ~l~g~~~~~~~~~~l~~ 323 (483)
++.|.. .+++..+..
T Consensus 93 ~iig~~--~~~~~~~~~ 107 (232)
T PRK04169 93 WIIGAH--VEAAPIIKK 107 (232)
T ss_pred hHhhHH--HHHHHHHhh
Confidence 666532 344555533
No 139
>PLN02461 Probable pyruvate kinase
Probab=32.28 E-value=6.5e+02 Score=27.02 Aligned_cols=82 Identities=12% Similarity=0.095 Sum_probs=52.8
Q ss_pred HHHHHhhcCCcEEEEe-cCCCCCCCH----HHHHHHHHHHHHcCCeEEEcCCCCCCCCCCC---ChHHHHHHHhhhcCCC
Q 011562 225 AEVKTAIKHSKVLFCN-GYGFDELSP----ALIISALEYAAQVGTSIFFDPGPRGKSLSSG---TPEEQRALSYFLSTSD 296 (483)
Q Consensus 225 ~~~~~~l~~~~~v~is-G~~~~~~~~----~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~---~~~~~~~l~~ll~~~d 296 (483)
+.+.+.+..+|.+.+. |-+-.+++. ....++++.|++.|.+|++-.+--..+.... ..+.-+....++..+|
T Consensus 249 ~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~dG~D 328 (511)
T PLN02461 249 DNFDDILAESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTD 328 (511)
T ss_pred HHHHHHHHhcCEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHHhCCc
Confidence 3455677889999888 665555554 3566889999999999998654211111111 2233444556778899
Q ss_pred EEEcCHHHHH
Q 011562 297 VLLLTSDEAE 306 (483)
Q Consensus 297 il~~N~~Ea~ 306 (483)
-+.++.+-+.
T Consensus 329 ~vMLS~ETA~ 338 (511)
T PLN02461 329 CVMLSGETAA 338 (511)
T ss_pred EEEEechhcC
Confidence 9988766543
No 140
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=32.22 E-value=5.3e+02 Score=25.87 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=26.8
Q ss_pred HHHHHHHcCCceEEEEEecCC-hhhHHHHHHHHHcCCCcc
Q 011562 134 VAIAAARLGLDCVTIGHVGNE-IYGRFLLDVLQDEGIGMV 172 (483)
Q Consensus 134 vA~~larLG~~v~lig~vG~D-~~g~~i~~~L~~~gId~~ 172 (483)
+|..+|..|.+|...|.-+-. ..| ..+.|+..||+..
T Consensus 95 ~a~vlA~~G~~V~kHG~~~~~s~~G--sadvLe~lGi~~~ 132 (339)
T PRK00188 95 AAFVAAAAGVKVAKHGNRSVSSKSG--SADVLEALGVNLD 132 (339)
T ss_pred HHHHHHhCCCEEEEECCCCCCCCcC--HHHHHHHcCCCCC
Confidence 577789999999999975532 234 3478888888763
No 141
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=31.40 E-value=3.2e+02 Score=25.23 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=30.8
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEE
Q 011562 225 AEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFF 268 (483)
Q Consensus 225 ~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~ 268 (483)
+.+...++++|.|++.-........+....+++.|++.|++.++
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v 99 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFV 99 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEE
Confidence 34556788999988773322234456778899999999998887
No 142
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=31.31 E-value=1.4e+02 Score=27.84 Aligned_cols=63 Identities=11% Similarity=0.182 Sum_probs=45.9
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHH-cCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEE----cCHHHHH
Q 011562 232 KHSKVLFCNGYGFDELSPALIISALEYAAQ-VGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLL----LTSDEAE 306 (483)
Q Consensus 232 ~~~~~v~isG~~~~~~~~~~~~~li~~a~~-~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~----~N~~Ea~ 306 (483)
..+|.+.++|+ .+...+.+.++++.+|+ .++||++.|+... .+.+++|.++ +|...-.
T Consensus 23 ~gtDaI~VGGS--~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~---------------~i~~~aD~~~~~sllns~~~~ 85 (205)
T TIGR01769 23 AGTDAIMVGGS--LGIVESNLDQTVKKIKKITNLPVILFPGNVN---------------GLSRYADAVFFMSLLNSADTY 85 (205)
T ss_pred cCCCEEEEcCc--CCCCHHHHHHHHHHHHhhcCCCEEEECCCcc---------------ccCcCCCEEEEEEeecCCCcc
Confidence 34799999987 35778888889988888 6799999886432 4567788654 3666666
Q ss_pred HhhCC
Q 011562 307 SLTGL 311 (483)
Q Consensus 307 ~l~g~ 311 (483)
++.|.
T Consensus 86 ~i~g~ 90 (205)
T TIGR01769 86 FIVGA 90 (205)
T ss_pred hhhhH
Confidence 66653
No 143
>PTZ00066 pyruvate kinase; Provisional
Probab=31.27 E-value=5.1e+02 Score=27.76 Aligned_cols=82 Identities=12% Similarity=0.138 Sum_probs=53.4
Q ss_pred HHHHHhhcCCcEEEEe-cCCCCCCCH----HHHHHHHHHHHHcCCeEEEcCCCCCCCCCCC---ChHHHHHHHhhhcCCC
Q 011562 225 AEVKTAIKHSKVLFCN-GYGFDELSP----ALIISALEYAAQVGTSIFFDPGPRGKSLSSG---TPEEQRALSYFLSTSD 296 (483)
Q Consensus 225 ~~~~~~l~~~~~v~is-G~~~~~~~~----~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~---~~~~~~~l~~ll~~~d 296 (483)
+.+.+.++.+|.+.+. |-+-.+++. ....++++.|++.|.+|++-.+--..+.... ..+.-+....++..+|
T Consensus 265 ~NldeIl~~sDGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~D 344 (513)
T PTZ00066 265 INFDEILAESDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTD 344 (513)
T ss_pred HHHHHHHHhcCEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCc
Confidence 3455677889999988 665445554 4677899999999999998654211111111 2233444566778899
Q ss_pred EEEcCHHHHH
Q 011562 297 VLLLTSDEAE 306 (483)
Q Consensus 297 il~~N~~Ea~ 306 (483)
-+.++.+-+.
T Consensus 345 avMLSgETA~ 354 (513)
T PTZ00066 345 CVMLSGETAN 354 (513)
T ss_pred EEEecchhcC
Confidence 9988766543
No 144
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=31.17 E-value=1.2e+02 Score=27.26 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=12.5
Q ss_pred ChhhHHHHHHHHHcCCCcc
Q 011562 154 EIYGRFLLDVLQDEGIGMV 172 (483)
Q Consensus 154 D~~g~~i~~~L~~~gId~~ 172 (483)
|.++.++.+.|++.|++..
T Consensus 18 d~n~~~l~~~L~~~G~~v~ 36 (170)
T cd00885 18 DTNAAFLAKELAELGIEVY 36 (170)
T ss_pred EhHHHHHHHHHHHCCCEEE
Confidence 5566677777777776553
No 145
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=31.15 E-value=37 Score=25.92 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=15.5
Q ss_pred CCCCchHHHHHHHHHHHH
Q 011562 360 DTVGCGDSFVAAVAFGFI 377 (483)
Q Consensus 360 DttGAGDaF~Ag~l~gl~ 377 (483)
...|..|+|++||+.|+.
T Consensus 45 r~~G~SE~~I~Gfl~Gl~ 62 (77)
T PF10911_consen 45 RKQGWSESYILGFLAGLQ 62 (77)
T ss_pred HHccccHHHHHHHHHHHH
Confidence 346999999999999984
No 146
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=30.86 E-value=2.8e+02 Score=22.95 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=27.4
Q ss_pred hcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCC
Q 011562 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPR 273 (483)
Q Consensus 231 l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~ 273 (483)
+.++|+++++ .+.+...++...+.+.|+ .++|.+..
T Consensus 64 ~~~~Dvvf~a------~~~~~~~~~~~~~~~~g~-~ViD~s~~ 99 (121)
T PF01118_consen 64 LSDVDVVFLA------LPHGASKELAPKLLKAGI-KVIDLSGD 99 (121)
T ss_dssp HTTESEEEE-------SCHHHHHHHHHHHHHTTS-EEEESSST
T ss_pred hhcCCEEEec------CchhHHHHHHHHHhhCCc-EEEeCCHH
Confidence 4789999986 466778888888888888 66687654
No 147
>PRK07582 cystathionine gamma-lyase; Validated
Probab=30.84 E-value=3.7e+02 Score=27.16 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=26.9
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCC
Q 011562 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGP 272 (483)
Q Consensus 232 ~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~ 272 (483)
.+.++|++..-.-+......+.++.+.|+++|+.+++|-.+
T Consensus 131 ~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~ 171 (366)
T PRK07582 131 AGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTT 171 (366)
T ss_pred cCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCC
Confidence 34567776632211222334678888999999999999864
No 148
>PRK07050 cystathionine beta-lyase; Provisional
Probab=30.82 E-value=4.1e+02 Score=27.24 Aligned_cols=41 Identities=10% Similarity=0.070 Sum_probs=30.5
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCC
Q 011562 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGP 272 (483)
Q Consensus 232 ~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~ 272 (483)
.+.++|+++.-.........+.++.+.|+++|+.+++|-.+
T Consensus 149 ~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~ 189 (394)
T PRK07050 149 PNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTY 189 (394)
T ss_pred CCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCc
Confidence 35678887643323345677889999999999999999864
No 149
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=30.70 E-value=85 Score=24.87 Aligned_cols=39 Identities=28% Similarity=0.318 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHHcCCceEEEEEecCChhhHHHHHHHHHcCCCcc
Q 011562 129 GGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMV 172 (483)
Q Consensus 129 Gg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~~L~~~gId~~ 172 (483)
|.+...+..+...|+++.+++.+|.. ....|++.||...
T Consensus 48 ~~~~~~~~~l~~~~v~~vi~~~iG~~-----a~~~l~~~gI~v~ 86 (102)
T cd00562 48 GEGKLAARLLALEGCDAVLVGGIGGP-----AAAKLEAAGIKPI 86 (102)
T ss_pred ccchHHHHHHHHCCCcEEEEcccCcc-----HHHHHHHcCCEEE
Confidence 55678899999999999999998877 5678888899763
No 150
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=30.40 E-value=1.9e+02 Score=29.34 Aligned_cols=140 Identities=16% Similarity=0.239 Sum_probs=77.9
Q ss_pred HHHcCCceEEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhh
Q 011562 138 AARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAF 217 (483)
Q Consensus 138 larLG~~v~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~ 217 (483)
+...|.+...+++|.+-..=..+++.|.+.|=+. .+. .-++. ...
T Consensus 185 a~~~~vD~IalSFVrsa~dV~~lr~~l~~~~~~~-~ii-------------------aKIE~--------------~~~- 229 (348)
T PF00224_consen 185 AVENGVDFIALSFVRSAEDVKELRKILGEKGKDI-KII-------------------AKIET--------------KEA- 229 (348)
T ss_dssp HHHTT-SEEEETTE-SHHHHHHHHHHHTCTTTTS-EEE-------------------EEE-S--------------HHH-
T ss_pred HHHcCCCEEEecCCCchHHHHHHHHHhhhcCccc-cee-------------------ecccc--------------HHH-
Confidence 3456788888888876655666777777766211 110 11110 001
Q ss_pred hhhhhccHHHHHhhcCCcEEEEe-cCCCCCCC----HHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCCh---HHHHHHH
Q 011562 218 SWMNKLSAEVKTAIKHSKVLFCN-GYGFDELS----PALIISALEYAAQVGTSIFFDPGPRGKSLSSGTP---EEQRALS 289 (483)
Q Consensus 218 ~~~~~l~~~~~~~l~~~~~v~is-G~~~~~~~----~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~---~~~~~l~ 289 (483)
.+.+.+.+..+|.+.++ |.+..+++ +.....+++.|++.|.||++-.+--..+.....| +.-+...
T Consensus 230 ------v~nl~eI~~~sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~n 303 (348)
T PF00224_consen 230 ------VENLDEILEASDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVAN 303 (348)
T ss_dssp ------HHTHHHHHHHSSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHH
T ss_pred ------HhhHHHHhhhcCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHH
Confidence 12344566778999998 65433333 3467789999999999999977643322222222 2223334
Q ss_pred hhhcCCCEEEcCHHHHHHhhCCCCHHHHHHHHH
Q 011562 290 YFLSTSDVLLLTSDEAESLTGLRNPITAGQELL 322 (483)
Q Consensus 290 ~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~~l~ 322 (483)
.++..+|-+.++.+-+. |. -+.++++.+.
T Consensus 304 av~dg~d~vmLs~ETa~---G~-~p~~~v~~~~ 332 (348)
T PF00224_consen 304 AVLDGADAVMLSGETAI---GK-YPVEAVKTMA 332 (348)
T ss_dssp HHHHT-SEEEESHHHHT---SS-SHHHHHHHHH
T ss_pred HHHcCCCEEEecCCcCC---CC-CHHHHHHHHH
Confidence 56789999999965432 32 3455555443
No 151
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=30.15 E-value=1.5e+02 Score=30.45 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=28.1
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHHcC-CeEEEcCCC
Q 011562 233 HSKVLFCNGYGFDELSPALIISALEYAAQVG-TSIFFDPGP 272 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~~~~~~li~~a~~~g-~~v~~D~~~ 272 (483)
+.++|++..-.-+.+..--+..+.+.|+++| +.+++|-..
T Consensus 140 ~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~ 180 (386)
T PF01053_consen 140 NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTF 180 (386)
T ss_dssp TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTT
T ss_pred cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccc
Confidence 6788998854433444557888999999999 999999864
No 152
>PRK15452 putative protease; Provisional
Probab=30.00 E-value=4.3e+02 Score=27.76 Aligned_cols=42 Identities=7% Similarity=0.165 Sum_probs=32.7
Q ss_pred hcCCcEEEEecCCC------CCCCHHHHHHHHHHHHHcCCeEEEcCCC
Q 011562 231 IKHSKVLFCNGYGF------DELSPALIISALEYAAQVGTSIFFDPGP 272 (483)
Q Consensus 231 l~~~~~v~isG~~~------~~~~~~~~~~li~~a~~~g~~v~~D~~~ 272 (483)
-..+|.|++.+-.+ .+...+.+.++++.|+++|+++++-.+.
T Consensus 21 ~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~ 68 (443)
T PRK15452 21 AYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNI 68 (443)
T ss_pred HCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecC
Confidence 36899999975432 2456688999999999999999987653
No 153
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=29.96 E-value=5.9e+02 Score=25.68 Aligned_cols=202 Identities=17% Similarity=0.123 Sum_probs=111.1
Q ss_pred HHHHHHHcCCceEEEEEecC-ChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCC
Q 011562 134 VAIAAARLGLDCVTIGHVGN-EIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFS 212 (483)
Q Consensus 134 vA~~larLG~~v~lig~vG~-D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~ 212 (483)
.|+.+|..|++|.-.|.-+- ...|. .+.|+..||++..-
T Consensus 97 aA~v~A~~Gv~VaKHGnrs~sSksGs--aDvleaLGv~l~~~-------------------------------------- 136 (338)
T COG0547 97 AAIVAAAAGVPVAKHGNRSVSSKSGS--ADVLEALGVNLELS-------------------------------------- 136 (338)
T ss_pred HHHHHHhCCCcEEeECCCCCCCCCcH--HHHHHHcCCCCCCC--------------------------------------
Confidence 57788899999998886552 23454 78899999987521
Q ss_pred CChhhhhhhhccHHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhh
Q 011562 213 KEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFL 292 (483)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll 292 (483)
.+...+.+++..+.++- .......+..+...-++.|++.+|+.-.. ++. ++-
T Consensus 137 -----------~e~~~~~l~~~g~~Flf----Ap~~hp~~k~v~~vR~~LG~RTifN~LGP---L~N----------Pa~ 188 (338)
T COG0547 137 -----------PEQAARALEETGIGFLF----APAYHPAMKHVAPVRKELGVRTIFNLLGP---LLN----------PAR 188 (338)
T ss_pred -----------HHHHHHHHHhcCeEEEE----ccccCHHHHHHHHHHHHcCCCchHHhhcc---ccC----------CCC
Confidence 01122334445554443 23333567788888889999999887321 111 111
Q ss_pred cCCCEEEcCHHHHHHhhCCCCHHHHHHHHHHcCCCccEEEEEeCCCcE-----------EEEECCee--EEecCccc---
Q 011562 293 STSDVLLLTSDEAESLTGLRNPITAGQELLRKGLRTKWVVVKMGPRGS-----------ILVTKSSI--SCAPAFKV--- 356 (483)
Q Consensus 293 ~~~dil~~N~~Ea~~l~g~~~~~~~~~~l~~~g~~~~~vVvT~G~~G~-----------~~~~~~~~--~~vpa~~v--- 356 (483)
...-++-+...++. ...++.|...|. +..+|-.|.+|. +...++++ |.+.+...
T Consensus 189 ~~~qliGV~~p~~~--------~~~A~~l~~LG~--~ralvV~G~~GlDE~~~~~~t~v~~l~~g~i~~~~l~pe~~Gl~ 258 (338)
T COG0547 189 AKLQLIGVYHPELV--------ELLAEALRLLGV--ERALVVHGLEGLDEVTPTGTTLVAELKDGEIREYTLTPEDFGLE 258 (338)
T ss_pred CCceEEEEeCHHHH--------HHHHHHHHHhCc--ceEEEEECCCCcccccCCCCceEEEEcCCceEEEEeCHHhcCCC
Confidence 12223323333322 234566667675 556777777663 22333332 33443322
Q ss_pred --cccCCCCchHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHh
Q 011562 357 --NVTDTVGCGDSFVAAVAFGFIHNMP-TVNTLTIANAVGAATAMGCGAGRNVATLERVIELMRA 418 (483)
Q Consensus 357 --~vvDttGAGDaF~Ag~l~gl~~g~~-l~~al~~A~aaAa~~v~~~G~~~~~p~~~ev~~~l~~ 418 (483)
+..|-.|..=.-.+.++-..+.|.. ...-.-..|+++++.+... ..+.+|=.+...+
T Consensus 259 ~~~~~~l~~~~~~ena~~~~~vL~G~~~~~~d~v~~Naa~~L~~~g~-----a~~l~eg~~~A~~ 318 (338)
T COG0547 259 RAPLEDLPGGDPEENAEILRAVLAGEEGPARDAVALNAAAALYAAGK-----AESLKEGIALALE 318 (338)
T ss_pred CCchhhcCCCCHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHcCc-----cCCHHHHHHHHHH
Confidence 2234455544556788888899855 4433444555556665442 3455665555444
No 154
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=29.96 E-value=6.3e+02 Score=25.96 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=36.6
Q ss_pred hhcCCcEEEEecCCC--C--CCCHHHHHHHHHHHHHcCCeEEEcCCCCC
Q 011562 230 AIKHSKVLFCNGYGF--D--ELSPALIISALEYAAQVGTSIFFDPGPRG 274 (483)
Q Consensus 230 ~l~~~~~v~isG~~~--~--~~~~~~~~~li~~a~~~g~~v~~D~~~~~ 274 (483)
.+...++|++.+.++ + +++.+...++++..++++...++|..+.+
T Consensus 168 ~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQG 216 (396)
T COG1448 168 TAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQG 216 (396)
T ss_pred hCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhh
Confidence 356778988888775 2 45678999999999999999999997654
No 155
>PRK03673 hypothetical protein; Provisional
Probab=29.82 E-value=1.2e+02 Score=31.28 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCCceEEEEEecCChhhHHHHHHHHHc
Q 011562 131 NCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDE 167 (483)
Q Consensus 131 ~~NvA~~larLG~~v~lig~vG~D~~g~~i~~~L~~~ 167 (483)
+...+..|..+|.++...+.+|+| -+.|.+.+++.
T Consensus 23 ~~~la~~L~~~G~~v~~~~~v~D~--~~~i~~~l~~a 57 (396)
T PRK03673 23 AAWLADFFFHQGLPLSRRNTVGDN--LDALVAILRER 57 (396)
T ss_pred HHHHHHHHHHCCCEEEEEEEcCCC--HHHHHHHHHHH
Confidence 456677777888888888888887 34466666654
No 156
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=28.92 E-value=7.6e+02 Score=26.60 Aligned_cols=154 Identities=13% Similarity=0.085 Sum_probs=78.9
Q ss_pred hhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc----CCCEEEcCHHHH
Q 011562 230 AIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS----TSDVLLLTSDEA 305 (483)
Q Consensus 230 ~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~----~~dil~~N~~Ea 305 (483)
.+++..+.++. .......+..++..-++.|++.+|+.-. +++. ..-++=....+.
T Consensus 334 ~l~~~g~~fl~----ap~~~p~l~~~~~~R~~Lg~rTifN~lg-----------------pL~NP~~~~~~v~Gv~~~~~ 392 (534)
T PRK14607 334 VLRETGFSFLF----APLFHPAMKHAAPARRELGIRTAFNLLG-----------------PLTNPARVKYQIVGVFDPSY 392 (534)
T ss_pred HHHHhCcEEee----ccccCHHHHHHHHHHHHhCCCcHHHhHH-----------------hccCCCCCCcEEEeeCCHHH
Confidence 34455555554 2223346677888888889988876521 2221 112222222332
Q ss_pred HHhhCCCCHHHHHHHHHHcCCCccEEEEEeCCCcE-----------EEEECCee--EEecCccc-----cccCCCCchHH
Q 011562 306 ESLTGLRNPITAGQELLRKGLRTKWVVVKMGPRGS-----------ILVTKSSI--SCAPAFKV-----NVTDTVGCGDS 367 (483)
Q Consensus 306 ~~l~g~~~~~~~~~~l~~~g~~~~~vVvT~G~~G~-----------~~~~~~~~--~~vpa~~v-----~vvDttGAGDa 367 (483)
. ...++.+...|. +..+|-.|.+|. +...+++. +.+++... +.-+..|..-.
T Consensus 393 ~--------~~~a~~l~~lg~--~~~~vv~G~~G~dE~s~~~~t~v~~~~~g~i~~~~i~p~~~Gl~~~~~~~~~~~~~~ 462 (534)
T PRK14607 393 A--------EPLAQALQRLGT--ERAMVVSGIDGYDEISTCGPTQILELEDGEIVTYTFDPEELGLKRVDPEELKGGDPQ 462 (534)
T ss_pred H--------HHHHHHHHHcCC--CEEEEEeCCCCCccccCCCceEEEEEcCCEEEEEEEcHHHCCCCCCCHHHcCCCCHH
Confidence 2 223444555565 445666677663 22223432 33444211 22233455567
Q ss_pred HHHHHHHHHHcCCC---HHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhcC
Q 011562 368 FVAAVAFGFIHNMP---TVNTLTIANAVGAATAMGCGAGRNVATLERVIELMRASN 420 (483)
Q Consensus 368 F~Ag~l~gl~~g~~---l~~al~~A~aaAa~~v~~~G~~~~~p~~~ev~~~l~~~~ 420 (483)
..+.++..+++|.. ..+++.+ |+++++.+... ..+.+|-.+..++.-
T Consensus 463 ~na~~~~~vl~G~~~~~~~~~v~l-naA~~L~~~g~-----~~s~~eg~~~a~~~i 512 (534)
T PRK14607 463 ENYRLAEDVLKGEPRRPQRDAVAL-NAGAALYLVGE-----ADSIKEGVGKALDLI 512 (534)
T ss_pred HHHHHHHHHHCCCCCChHHHHHHH-HHHHHHHHcCC-----CCCHHHHHHHHHHHH
Confidence 88899999999863 4555444 44444544332 346666655555543
No 157
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=28.30 E-value=5.3e+02 Score=24.63 Aligned_cols=96 Identities=15% Similarity=0.177 Sum_probs=54.8
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc-CCCEEEc-----CHHHHHH
Q 011562 234 SKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS-TSDVLLL-----TSDEAES 307 (483)
Q Consensus 234 ~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~-~~dil~~-----N~~Ea~~ 307 (483)
+|+|=+.- ..+.+.+.++++.+++.+.++++.-..... .....+..+.+..... .+|++++ +..+...
T Consensus 110 ~d~vDiEl----~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~--tP~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ 183 (253)
T PRK02412 110 PDYIDVEL----FSGKDVVKEMVAFAHEHGVKVVLSYHDFEK--TPPKEEIVERLRKMESLGADIVKIAVMPQSEQDVLT 183 (253)
T ss_pred CCEEEEec----cCChHHHHHHHHHHHHcCCEEEEeeCCCCC--CcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHH
Confidence 58887762 334567888888899999998885432111 1111233344444443 5788876 3344333
Q ss_pred hhCCCCHHHHHHHHHHcCCCccEEEEEeCCCcEE
Q 011562 308 LTGLRNPITAGQELLRKGLRTKWVVVKMGPRGSI 341 (483)
Q Consensus 308 l~g~~~~~~~~~~l~~~g~~~~~vVvT~G~~G~~ 341 (483)
+ ..+.+.+.+.+.+.+.+.+.+|+.|.+
T Consensus 184 l------l~~~~~~~~~~~~~P~i~~~MG~~G~~ 211 (253)
T PRK02412 184 L------LNATREMKELYADQPLITMSMGKLGRI 211 (253)
T ss_pred H------HHHHHHHHhcCCCCCEEEEeCCCCchH
Confidence 3 233333433323346788999999854
No 158
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=28.09 E-value=4.4e+02 Score=27.23 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=30.4
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCC
Q 011562 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRG 274 (483)
Q Consensus 232 ~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~ 274 (483)
.+.++|++..-.-+.+...-+..+.+.|+++|+.+++|-....
T Consensus 148 ~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfat 190 (396)
T COG0626 148 PNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFAT 190 (396)
T ss_pred cCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccc
Confidence 3789999984322222334677889999999999999986443
No 159
>PLN02623 pyruvate kinase
Probab=27.96 E-value=7.2e+02 Score=27.13 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=46.4
Q ss_pred HHHhhcCCcEEEEe-cCCCCCCC----HHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCC---hHHHHHHHhhhcCCCEE
Q 011562 227 VKTAIKHSKVLFCN-GYGFDELS----PALIISALEYAAQVGTSIFFDPGPRGKSLSSGT---PEEQRALSYFLSTSDVL 298 (483)
Q Consensus 227 ~~~~l~~~~~v~is-G~~~~~~~----~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~---~~~~~~l~~ll~~~dil 298 (483)
+.+.+...|.+++. |-+-.+++ +....++++.|+++|+++++-.+--..+..... .+..+.-..+...+|.+
T Consensus 335 ldeIl~g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~v 414 (581)
T PLN02623 335 LHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAV 414 (581)
T ss_pred HHHHHHhCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEE
Confidence 44456688999988 32322333 457888999999999999964421111111111 12233334456788998
Q ss_pred EcCHHH
Q 011562 299 LLTSDE 304 (483)
Q Consensus 299 ~~N~~E 304 (483)
.++.+-
T Consensus 415 mLs~Et 420 (581)
T PLN02623 415 MLSGET 420 (581)
T ss_pred Eecchh
Confidence 887654
No 160
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=27.91 E-value=90 Score=25.45 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=26.2
Q ss_pred cCCCCchHHHHHHHHHHHHcC-CCHHHHHHHH
Q 011562 359 TDTVGCGDSFVAAVAFGFIHN-MPTVNTLTIA 389 (483)
Q Consensus 359 vDttGAGDaF~Ag~l~gl~~g-~~l~~al~~A 389 (483)
.|-.|-||..-|-++|+|++| .+.+||+++=
T Consensus 53 ~dkh~kGd~aEA~iAyAWLeg~it~eEaveil 84 (120)
T PF11469_consen 53 TDKHGKGDIAEALIAYAWLEGKITIEEAVEIL 84 (120)
T ss_dssp GGCCGHHHHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred ccccCccHHHHHHHHHHHHhccccHHHHHHHH
Confidence 588999999999999999998 4888888763
No 161
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=27.81 E-value=1.5e+02 Score=25.37 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=17.8
Q ss_pred CChhhHHHHHHHHHcCCCccce
Q 011562 153 NEIYGRFLLDVLQDEGIGMVGM 174 (483)
Q Consensus 153 ~D~~g~~i~~~L~~~gId~~~v 174 (483)
.|.++.++.+.|++.|++....
T Consensus 15 ~d~n~~~l~~~l~~~G~~v~~~ 36 (144)
T PF00994_consen 15 RDSNGPFLAALLEELGIEVIRY 36 (144)
T ss_dssp EBHHHHHHHHHHHHTTEEEEEE
T ss_pred EEhHHHHHHHHHHHcCCeeeEE
Confidence 4788999999999998866433
No 162
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=27.37 E-value=4.6e+02 Score=26.55 Aligned_cols=75 Identities=13% Similarity=0.183 Sum_probs=48.9
Q ss_pred cCCcEEEEecC--CC----CCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc-CCCEEEcCHHH
Q 011562 232 KHSKVLFCNGY--GF----DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS-TSDVLLLTSDE 304 (483)
Q Consensus 232 ~~~~~v~isG~--~~----~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~-~~dil~~N~~E 304 (483)
..+|.|++++. .. .+.+.+.+.++++.|+++|+++.+-.+.... ....+...+.+..+.. .+|-++++.--
T Consensus 25 ~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~--~~~~~~~~~~l~~l~e~GvDaviv~Dpg 102 (347)
T COG0826 25 AGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLH--NDELETLERYLDRLVELGVDAVIVADPG 102 (347)
T ss_pred cCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccc--cchhhHHHHHHHHHHHcCCCEEEEcCHH
Confidence 34899999854 21 2577888999999999999988876664332 1222333455555554 67877776554
Q ss_pred HHHh
Q 011562 305 AESL 308 (483)
Q Consensus 305 a~~l 308 (483)
+-.+
T Consensus 103 ~i~l 106 (347)
T COG0826 103 LIML 106 (347)
T ss_pred HHHH
Confidence 4443
No 163
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=27.25 E-value=4.7e+02 Score=24.75 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=26.1
Q ss_pred HHHHHHHcCCceEEEE-E----ecCChhhHHHHHHHHHcCCCccce
Q 011562 134 VAIAAARLGLDCVTIG-H----VGNEIYGRFLLDVLQDEGIGMVGM 174 (483)
Q Consensus 134 vA~~larLG~~v~lig-~----vG~D~~g~~i~~~L~~~gId~~~v 174 (483)
.+.+|..+|.++.-++ . .|.+.. ..-++.|++.||...+.
T Consensus 67 ~~~~L~~~G~d~vslANNH~~D~G~~gl-~~Tl~~L~~~gi~~~Ga 111 (250)
T PF09587_consen 67 ILDALKDAGFDVVSLANNHIFDYGEEGL-LDTLEALDKAGIPYVGA 111 (250)
T ss_pred HHHHHHHcCCCEEEecCCCCccccHHHH-HHHHHHHHHCCCcEeEC
Confidence 4888999999976655 1 222211 22456788899988774
No 164
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=27.14 E-value=2.4e+02 Score=25.34 Aligned_cols=18 Identities=22% Similarity=0.584 Sum_probs=15.6
Q ss_pred ChhhHHHHHHHHHcCCCc
Q 011562 154 EIYGRFLLDVLQDEGIGM 171 (483)
Q Consensus 154 D~~g~~i~~~L~~~gId~ 171 (483)
|..|+.+.++|++.|.+.
T Consensus 26 D~sG~~l~~~L~~ag~~~ 43 (169)
T COG0521 26 DKSGPLLVELLEEAGHNV 43 (169)
T ss_pred ccchhHHHHHHHHcCCcc
Confidence 678999999999988776
No 165
>PLN02765 pyruvate kinase
Probab=27.00 E-value=7.2e+02 Score=26.76 Aligned_cols=81 Identities=14% Similarity=0.132 Sum_probs=52.6
Q ss_pred HHHHHhhcCCcEEEEe-cCCCCCCCH----HHHHHHHHHHHHcCCeEEEcCCCCCCCCCCC---ChHHHHHHHhhhcCCC
Q 011562 225 AEVKTAIKHSKVLFCN-GYGFDELSP----ALIISALEYAAQVGTSIFFDPGPRGKSLSSG---TPEEQRALSYFLSTSD 296 (483)
Q Consensus 225 ~~~~~~l~~~~~v~is-G~~~~~~~~----~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~---~~~~~~~l~~ll~~~d 296 (483)
+.+.+.+..+|.+.+. |-+-.+++. ....++++.|++.|.+|+. .+--..+.... ..+.-+....++..+|
T Consensus 263 ~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~-TQmLeSMi~np~PTRAEvsDVaNAV~DGaD 341 (526)
T PLN02765 263 THFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGAD 341 (526)
T ss_pred HHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeEE-ehhhhHHhhCCCCChhhHHHHHHHHHhCCC
Confidence 3455677889999888 665555554 4677899999999999986 54211111111 2233444556778999
Q ss_pred EEEcCHHHHH
Q 011562 297 VLLLTSDEAE 306 (483)
Q Consensus 297 il~~N~~Ea~ 306 (483)
-+.++.+-+.
T Consensus 342 avMLSgETA~ 351 (526)
T PLN02765 342 AILLGAETLR 351 (526)
T ss_pred EEEecchhcC
Confidence 9998866543
No 166
>PRK01215 competence damage-inducible protein A; Provisional
Probab=26.42 E-value=2.4e+02 Score=27.34 Aligned_cols=75 Identities=12% Similarity=0.162 Sum_probs=44.7
Q ss_pred ChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcC
Q 011562 154 EIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKH 233 (483)
Q Consensus 154 D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 233 (483)
|.++.++.+.|++.|++..... .+.++ . +.+.+.+...+..
T Consensus 22 dtn~~~l~~~L~~~G~~v~~~~--------------------~v~Dd----------------~---~~I~~~l~~a~~~ 62 (264)
T PRK01215 22 NTNASWIARRLTYLGYTVRRIT--------------------VVMDD----------------I---EEIVSAFREAIDR 62 (264)
T ss_pred EhhHHHHHHHHHHCCCeEEEEE--------------------EeCCC----------------H---HHHHHHHHHHhcC
Confidence 6689999999999998875442 22211 1 1222444555677
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcC
Q 011562 234 SKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDP 270 (483)
Q Consensus 234 ~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~ 270 (483)
+|+|+++|-. +....+...+++..+ .|.++.+|+
T Consensus 63 ~DlVIttGG~-g~t~dD~t~eaia~~--~g~~l~~~~ 96 (264)
T PRK01215 63 ADVVVSTGGL-GPTYDDKTNEGFAKA--LGVELELNE 96 (264)
T ss_pred CCEEEEeCCC-cCChhhhHHHHHHHH--hCCCCCCCH
Confidence 8999999653 233345555555443 355555554
No 167
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=26.38 E-value=5e+02 Score=26.19 Aligned_cols=41 Identities=15% Similarity=0.104 Sum_probs=29.8
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCC
Q 011562 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGP 272 (483)
Q Consensus 232 ~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~ 272 (483)
++.++|++..-..+......+.++.+.|+++|+.+++|-.+
T Consensus 135 ~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 135 PNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred cCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 35678887633222344567889999999999999999754
No 168
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=26.34 E-value=6.9e+02 Score=26.57 Aligned_cols=91 Identities=13% Similarity=0.126 Sum_probs=52.2
Q ss_pred HHhhcCCcEEEEe-cCCCCCCC----HHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCC---ChHHHHHHHhhhcCCCEEE
Q 011562 228 KTAIKHSKVLFCN-GYGFDELS----PALIISALEYAAQVGTSIFFDPGPRGKSLSSG---TPEEQRALSYFLSTSDVLL 299 (483)
Q Consensus 228 ~~~l~~~~~v~is-G~~~~~~~----~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~---~~~~~~~l~~ll~~~dil~ 299 (483)
.+.++.+|.+++. |-+..+++ +....++++.|+++|+++++-.+--..+.... ..+.-+....++..+|-+.
T Consensus 232 deI~~~~DgImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vm 311 (480)
T cd00288 232 DEILEASDGIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVM 311 (480)
T ss_pred HHHHHhcCEEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEE
Confidence 3344558999887 32222232 34777889999999999998553211111111 2233444556778899888
Q ss_pred cCHHHHHHhhCCCCHHHHHHHHH
Q 011562 300 LTSDEAESLTGLRNPITAGQELL 322 (483)
Q Consensus 300 ~N~~Ea~~l~g~~~~~~~~~~l~ 322 (483)
++.+-+. |. -+.++.+.+.
T Consensus 312 LS~ETa~---G~-yPveaV~~m~ 330 (480)
T cd00288 312 LSGETAK---GK-YPVEAVKAMA 330 (480)
T ss_pred EechhcC---CC-CHHHHHHHHH
Confidence 8765433 22 3455555444
No 169
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.95 E-value=5.6e+02 Score=26.71 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=35.9
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcC
Q 011562 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLT 301 (483)
Q Consensus 232 ~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N 301 (483)
.+.++|++..........--+.++.+.|+++|+.+++|......... ..+--.+|++..+
T Consensus 148 ~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~----------~pl~~GaD~vv~S 207 (433)
T PRK08134 148 PNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLL----------RPFEHGADLVYHS 207 (433)
T ss_pred CCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccC----------CchhcCCCEEEec
Confidence 35677777643211111123678889999999999999865332111 1222358888776
No 170
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=25.95 E-value=1.6e+02 Score=21.56 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011562 366 DSFVAAVAFGFIHNMPTVNTLTIANAV 392 (483)
Q Consensus 366 DaF~Ag~l~gl~~g~~l~~al~~A~aa 392 (483)
|+|.+|+.+++. +.+....+..+...
T Consensus 4 Daf~vg~~~g~~-~~~~~~~~~~~~~i 29 (67)
T PF02659_consen 4 DAFAVGISYGLR-GISRRIILLIALII 29 (67)
T ss_pred HHHHHHHHHHHH-cCChHHHHHHHHHH
Confidence 999999999998 45544444444443
No 171
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=25.63 E-value=5.8e+02 Score=24.19 Aligned_cols=99 Identities=10% Similarity=0.022 Sum_probs=54.9
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc-CCCEEEc-----CHHHHH
Q 011562 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS-TSDVLLL-----TSDEAE 306 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~-~~dil~~-----N~~Ea~ 306 (483)
.+|+|=+.-.. ....+...++++.+++.|.+|++--..... .....+....+..+.. .+|++++ +..+..
T Consensus 97 ~~d~vDiE~~~--~~~~~~~~~l~~~~~~~~~~vI~S~H~F~~--TP~~~~l~~~~~~m~~~gaDi~KiAv~~~~~~Dvl 172 (238)
T PRK13575 97 GIDMIDIEWQA--DIDIEKHQRLITHLQQYNKEVVISHHNFES--TPPLDELKFIFFKMQKFNPEYVKLAVMPHNKNDVL 172 (238)
T ss_pred CCCEEEEEccc--CCChHHHHHHHHHHHHcCCEEEEecCCCCC--CCCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHH
Confidence 35777665211 124567888899999999999985432211 1112233344455544 4788876 233333
Q ss_pred HhhCCCCHHHHHHHHHHcCCCccEEEEEeCCCcEEE
Q 011562 307 SLTGLRNPITAGQELLRKGLRTKWVVVKMGPRGSIL 342 (483)
Q Consensus 307 ~l~g~~~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~ 342 (483)
.++ ++.....+. .+.+.+.+.+|+.|.+.
T Consensus 173 ~Ll------~~~~~~~~~-~~~p~i~i~MG~~G~iS 201 (238)
T PRK13575 173 NLL------QAMSTFSDT-MDCKVVGISMSKLGLIS 201 (238)
T ss_pred HHH------HHHHHHHhc-cCCCEEEEeCCCCCchh
Confidence 332 222222222 22367999999999643
No 172
>PTZ00058 glutathione reductase; Provisional
Probab=25.44 E-value=84 Score=34.10 Aligned_cols=75 Identities=13% Similarity=0.032 Sum_probs=0.0
Q ss_pred CCCcccccccCCCCCCCccCcccccccCCCCCCCCCCCCCCCccccccccCCCCCccEEEECCceeEEEecCCCCCCCCh
Q 011562 27 PRLTTTVTLPIFPPFPIKSWRNSILHCNGTGVSAPSNSQNGTAHDWKLRSSGVKSIDVATLGNLCVDIVLNVPQLPPPSR 106 (483)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlviG~~~iD~~~~v~~~p~~~~ 106 (483)
++++.++.+-+ +..++..+..-...+++..++...+.-.-......+.||+|||
T Consensus 2 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvvVIG------------------ 55 (561)
T PTZ00058 2 RQLSYFHFLLF--------FALLNPSIKLIRSFSFYHNLEASSAPTHLKKKPRMVYDLIVIG------------------ 55 (561)
T ss_pred Cccchhhhhhh--------hhhhhhhHhhhhhhchhhhhcccCcccccccCCCccccEEEEC------------------
Q ss_pred hhhhHHhhhhccCCCCCccccCCc-HHHHHHHHHHcCCceEEE
Q 011562 107 DARKAYMDQLSASPPDKQYWEAGG-NCNVAIAAARLGLDCVTI 148 (483)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~GGg-~~NvA~~larLG~~v~li 148 (483)
||. |..+|..++++|.+|.+|
T Consensus 56 ---------------------~G~aG~~aA~~aa~~G~~ValI 77 (561)
T PTZ00058 56 ---------------------GGSGGMAAARRAARNKAKVALV 77 (561)
T ss_pred ---------------------cCHHHHHHHHHHHHcCCeEEEE
No 173
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=24.87 E-value=1.6e+02 Score=31.02 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCCceEEEE
Q 011562 131 NCNVAIAAARLGLDCVTIG 149 (483)
Q Consensus 131 ~~NvA~~larLG~~v~lig 149 (483)
|.-.|..|++.|.+|.++=
T Consensus 51 G~~aA~~LA~~G~~VlllE 69 (450)
T PLN00093 51 GACAAETLAKGGIETFLIE 69 (450)
T ss_pred HHHHHHHHHhCCCcEEEEe
Confidence 3456777788888877774
No 174
>PRK04148 hypothetical protein; Provisional
Probab=24.81 E-value=2.5e+02 Score=24.24 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=29.8
Q ss_pred hcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcC
Q 011562 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDP 270 (483)
Q Consensus 231 l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~ 270 (483)
.+++|+++-. ..++|....+++.|++.|+.+++-|
T Consensus 75 y~~a~liysi-----rpp~el~~~~~~la~~~~~~~~i~~ 109 (134)
T PRK04148 75 YKNAKLIYSI-----RPPRDLQPFILELAKKINVPLIIKP 109 (134)
T ss_pred HhcCCEEEEe-----CCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 3678888865 6778999999999999999999876
No 175
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=24.81 E-value=5.4e+02 Score=23.50 Aligned_cols=38 Identities=3% Similarity=-0.020 Sum_probs=27.9
Q ss_pred HHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEc
Q 011562 227 VKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFD 269 (483)
Q Consensus 227 ~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D 269 (483)
..+.++++|+|+.+ ..+.+....+-+.|++++++++.-
T Consensus 107 ~~~~~~~~dvVi~~-----~d~~~~~~~ln~~c~~~~ip~i~~ 144 (198)
T cd01485 107 IEEYLQKFTLVIAT-----EENYERTAKVNDVCRKHHIPFISC 144 (198)
T ss_pred HHHHHhCCCEEEEC-----CCCHHHHHHHHHHHHHcCCCEEEE
Confidence 34567789988876 334667777888999999988763
No 176
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=24.63 E-value=3.1e+02 Score=22.04 Aligned_cols=60 Identities=10% Similarity=0.072 Sum_probs=36.9
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHHcC---CeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEE
Q 011562 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVG---TSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLL 299 (483)
Q Consensus 232 ~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g---~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~ 299 (483)
+++|+++++.....+...+.....++.+++.+ .+|++--=.. ....+.+....+.+|+++
T Consensus 35 e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~a--------q~~~~~l~~~~p~vd~v~ 97 (98)
T PF00919_consen 35 EEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMA--------QRYGEELKKEFPEVDLVV 97 (98)
T ss_pred ccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCcc--------ccChHHHHhhCCCeEEEe
Confidence 67899999866555555555556666666554 6666532111 122456677788888876
No 177
>PRK05826 pyruvate kinase; Provisional
Probab=24.63 E-value=4e+02 Score=28.21 Aligned_cols=129 Identities=16% Similarity=0.164 Sum_probs=75.6
Q ss_pred HHHHcCCceEEEEEecCChhhHHHHHHHHHcCC-CccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCCh
Q 011562 137 AAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGI-GMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEP 215 (483)
Q Consensus 137 ~larLG~~v~lig~vG~D~~g~~i~~~L~~~gI-d~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~ 215 (483)
-+..+|.+-..++.|.+-+.-+.+++.+.+.|- ++..+ .-++. ..
T Consensus 181 ~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~ii--------------------akIEt--------------~e 226 (465)
T PRK05826 181 FAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKII--------------------AKIER--------------AE 226 (465)
T ss_pred HHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEE--------------------EEEcC--------------HH
Confidence 344678999999999887778888888877654 22111 12221 00
Q ss_pred hhhhhhhccHHHHHhhcCCcEEEEecC-CCCCC----CHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCC---CChHHHHH
Q 011562 216 AFSWMNKLSAEVKTAIKHSKVLFCNGY-GFDEL----SPALIISALEYAAQVGTSIFFDPGPRGKSLSS---GTPEEQRA 287 (483)
Q Consensus 216 ~~~~~~~l~~~~~~~l~~~~~v~isG~-~~~~~----~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~---~~~~~~~~ 287 (483)
.. +.+.+.+.-+|.+++.-. +-.++ -+....++++.|+++|+++++-.+--..+... ...+.-+.
T Consensus 227 av-------~nldeI~~~~DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDV 299 (465)
T PRK05826 227 AV-------DNIDEIIEASDGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDV 299 (465)
T ss_pred HH-------HhHHHHHHHcCEEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhH
Confidence 11 223334445888888732 21122 24577889999999999999864311111111 12233334
Q ss_pred HHhhhcCCCEEEcCHHHHH
Q 011562 288 LSYFLSTSDVLLLTSDEAE 306 (483)
Q Consensus 288 l~~ll~~~dil~~N~~Ea~ 306 (483)
....+..+|-+.++.+-+.
T Consensus 300 anav~dG~D~vmLS~ETA~ 318 (465)
T PRK05826 300 ANAVLDGTDAVMLSGETAA 318 (465)
T ss_pred HHHHHcCCcEEEecccccc
Confidence 4566788998888765443
No 178
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=24.53 E-value=3.4e+02 Score=25.81 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=31.7
Q ss_pred HHHHHHHHcCC-ceEEEEEecCChhhHHHHHHHHHcCCCccce
Q 011562 133 NVAIAAARLGL-DCVTIGHVGNEIYGRFLLDVLQDEGIGMVGM 174 (483)
Q Consensus 133 NvA~~larLG~-~v~lig~vG~D~~g~~i~~~L~~~gId~~~v 174 (483)
-+..+|+.||. ++.+++..-+| .-+.+++.|++.|+++..+
T Consensus 110 A~~~AL~alg~~RIalvTPY~~~-v~~~~~~~l~~~G~eV~~~ 151 (239)
T TIGR02990 110 AAVDGLAALGVRRISLLTPYTPE-TSRPMAQYFAVRGFEIVNF 151 (239)
T ss_pred HHHHHHHHcCCCEEEEECCCcHH-HHHHHHHHHHhCCcEEeee
Confidence 35556778885 47777877666 7888999999999998655
No 179
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=24.33 E-value=2.1e+02 Score=29.72 Aligned_cols=21 Identities=19% Similarity=0.397 Sum_probs=17.4
Q ss_pred ChhhHHHHHHHHHcCCCccce
Q 011562 154 EIYGRFLLDVLQDEGIGMVGM 174 (483)
Q Consensus 154 D~~g~~i~~~L~~~gId~~~v 174 (483)
|.++.++.+.|++.|++....
T Consensus 19 dtN~~~l~~~L~~~G~~v~~~ 39 (413)
T TIGR00200 19 NTNAQWLADFLAHQGLPLSRR 39 (413)
T ss_pred EchHHHHHHHHHHCCCeEEEE
Confidence 668999999999999886544
No 180
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=24.33 E-value=2.4e+02 Score=26.38 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=37.7
Q ss_pred hcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcC-CeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEE
Q 011562 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVG-TSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLL 299 (483)
Q Consensus 231 l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g-~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~ 299 (483)
+.++++|++++..-.+.+ +...+.++..+.++ ..++++|-+... |.........+..+++++|.+.
T Consensus 148 ~~~t~vvIiSDg~~~~~~-~~~~~~l~~l~~r~~rviwLnP~~~~~--~~~~~~~~~~~~~~~~~v~~~~ 214 (222)
T PF05762_consen 148 LRRTTVVIISDGWDTNDP-EPLAEELRRLRRRGRRVIWLNPLPRAG--WPGYDPVARGYRAALPYVDACR 214 (222)
T ss_pred ccCcEEEEEecccccCCh-HHHHHHHHHHHHhCCEEEEECCccccc--CCCCChHHHHHHHhCChhhhcC
Confidence 367889999864333333 44445555555555 456678853332 3333333666777888876554
No 181
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=24.28 E-value=94 Score=32.31 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=0.0
Q ss_pred CCCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCc-HHHHHHHHHHcCCceEEE
Q 011562 79 VKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGG-NCNVAIAAARLGLDCVTI 148 (483)
Q Consensus 79 ~~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg-~~NvA~~larLG~~v~li 148 (483)
|+.+||+||| ||. |..+|..++++|.+|.++
T Consensus 1 ~~~~dvvVIG---------------------------------------~GpaG~~aA~~l~~~g~~V~li 32 (438)
T PRK07251 1 MLTYDLIVIG---------------------------------------FGKAGKTLAAKLASAGKKVALV 32 (438)
T ss_pred CCccCEEEEC---------------------------------------CCHHHHHHHHHHHhCCCEEEEE
No 182
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=24.14 E-value=5.2e+02 Score=23.05 Aligned_cols=81 Identities=22% Similarity=0.324 Sum_probs=48.1
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc--CCCEEEc----CHHHHHH
Q 011562 234 SKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS--TSDVLLL----TSDEAES 307 (483)
Q Consensus 234 ~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~--~~dil~~----N~~Ea~~ 307 (483)
.+.+.++|-- +-+.++ +.++++.+++.|..+.+..+... + +.+..++. ..|.+.+ ..++...
T Consensus 63 ~~~i~~sGGE-Pll~~~-l~~li~~~~~~g~~v~i~TNg~~-------~---~~l~~l~~~g~~~~v~isl~~~~~~~~~ 130 (191)
T TIGR02495 63 IDGVVITGGE-PTLQAG-LPDFLRKVRELGFEVKLDTNGSN-------P---RVLEELLEEGLVDYVAMDVKAPPEKYPE 130 (191)
T ss_pred CCeEEEECCc-ccCcHh-HHHHHHHHHHCCCeEEEEeCCCC-------H---HHHHHHHhcCCCcEEEEeccCChHHHHH
Confidence 4567777622 223344 78899999999999998887531 1 23334443 3466544 3344566
Q ss_pred hhCCC-----CHHHHHHHHHHcCC
Q 011562 308 LTGLR-----NPITAGQELLRKGL 326 (483)
Q Consensus 308 l~g~~-----~~~~~~~~l~~~g~ 326 (483)
++|.. ...+.++.+.+.|.
T Consensus 131 ~~g~~~~~~~~~~~~i~~l~~~gi 154 (191)
T TIGR02495 131 LYGLEKNGSNNILKSLEILLRSGI 154 (191)
T ss_pred HHCCCCchHHHHHHHHHHHHHcCC
Confidence 76643 34456667777765
No 183
>PF12770 CHAT: CHAT domain
Probab=23.77 E-value=5.4e+02 Score=24.52 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=52.2
Q ss_pred hcCCCEEEcCHHHHHH--hhCCCCHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHH
Q 011562 292 LSTSDVLLLTSDEAES--LTGLRNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFV 369 (483)
Q Consensus 292 l~~~dil~~N~~Ea~~--l~g~~~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~ 369 (483)
++.++++++|.=+-.. ..+.+.....+..++..|+ +.||.++. +|-| -+...|+
T Consensus 187 l~~~~lVvLsaC~s~~~~~~~~~~~~~l~~~~l~aG~--~~Vi~~~w--------------------~V~d--~~a~~f~ 242 (287)
T PF12770_consen 187 LRGPRLVVLSACESASGDPSDGDEVLGLARAFLQAGA--PAVIGMLW--------------------PVPD--QAAARFM 242 (287)
T ss_pred CCCCCEEEecCcCCcCCCCCCchHHHHHHHHHHHcCC--CEEEeccc--------------------Ccch--HHHHHHH
Confidence 3447888876533221 1122345667888888887 55776541 1112 3455899
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH
Q 011562 370 AAVAFGFIHNMPTVNTLTIANAVGA 394 (483)
Q Consensus 370 Ag~l~gl~~g~~l~~al~~A~aaAa 394 (483)
..|-..|..|.++.+|++.|-....
T Consensus 243 ~~fY~~L~~g~~~~~Al~~Ar~~l~ 267 (287)
T PF12770_consen 243 RRFYRALLQGQSVAEALRQARRALR 267 (287)
T ss_pred HHHHHhhhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999998776643
No 184
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=23.74 E-value=7.4e+02 Score=24.75 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=45.8
Q ss_pred CccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCc---HHHHHHHHHHcCCceEEEEEecCChhh
Q 011562 81 SIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGG---NCNVAIAAARLGLDCVTIGHVGNEIYG 157 (483)
Q Consensus 81 ~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg---~~NvA~~larLG~~v~lig~vG~D~~g 157 (483)
....+-.|...+|..+.+..+|...... +. .++ -.|+ +...+..+++.|..|.++..=+.
T Consensus 32 ~~~~i~TGi~~LD~~Lg~GGlp~G~ite-------I~-G~~-----GsGKTtLaL~~~~~~~~~g~~v~yId~E~~---- 94 (321)
T TIGR02012 32 DVETISTGSLSLDLALGVGGLPRGRIIE-------IY-GPE-----SSGKTTLALHAIAEAQKAGGTAAFIDAEHA---- 94 (321)
T ss_pred cCceecCCCHHHHHHhcCCCCcCCeEEE-------EE-CCC-----CCCHHHHHHHHHHHHHHcCCcEEEEcccch----
Confidence 4456777999999887656777654321 11 110 0143 23556667788999999965332
Q ss_pred HHHHHHHHHcCCCccce
Q 011562 158 RFLLDVLQDEGIGMVGM 174 (483)
Q Consensus 158 ~~i~~~L~~~gId~~~v 174 (483)
.-...+++.|++.+.+
T Consensus 95 -~~~~~a~~lGvd~~~l 110 (321)
T TIGR02012 95 -LDPVYARKLGVDIDNL 110 (321)
T ss_pred -hHHHHHHHcCCCHHHe
Confidence 2224677888887654
No 185
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=23.51 E-value=4.5e+02 Score=26.85 Aligned_cols=39 Identities=21% Similarity=0.089 Sum_probs=25.7
Q ss_pred CCcEEEEecCC-CCCCCHHHHHHHHHHHHHcCCeEEEcCCC
Q 011562 233 HSKVLFCNGYG-FDELSPALIISALEYAAQVGTSIFFDPGP 272 (483)
Q Consensus 233 ~~~~v~isG~~-~~~~~~~~~~~li~~a~~~g~~v~~D~~~ 272 (483)
+.++|+++.-. +... ...+.++.+.|+++|+.+++|-..
T Consensus 146 ~tklV~ie~p~NptG~-v~dl~~I~~la~~~gi~livD~t~ 185 (390)
T PRK08133 146 NTKLFFLETPSNPLTE-LADIAALAEIAHAAGALLVVDNCF 185 (390)
T ss_pred CCeEEEEECCCCCCCC-cCCHHHHHHHHHHcCCEEEEECCC
Confidence 46677775321 1111 123578888899999999999854
No 186
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=23.02 E-value=50 Score=34.49 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=21.5
Q ss_pred cccCCcHHHHHHHHHHcCCce--EEEEEec
Q 011562 125 YWEAGGNCNVAIAAARLGLDC--VTIGHVG 152 (483)
Q Consensus 125 ~~~GGg~~NvA~~larLG~~v--~lig~vG 152 (483)
.+.||.+.-+|..++++|+++ .+.+.++
T Consensus 86 ~rmGGqAgimAn~la~lg~~~vI~~~~~ls 115 (446)
T TIGR02045 86 ERMGGQAGIISNLLGRLGLKKVIAYTPFLS 115 (446)
T ss_pred eeeCCHHHHHHHHHHhcCCceEEEeCCCCC
Confidence 467888999999999999985 3444444
No 187
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=22.95 E-value=1e+02 Score=32.37 Aligned_cols=31 Identities=39% Similarity=0.613 Sum_probs=0.0
Q ss_pred CCCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCc-HHHHHHHHHHcCCceEEE
Q 011562 79 VKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGG-NCNVAIAAARLGLDCVTI 148 (483)
Q Consensus 79 ~~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg-~~NvA~~larLG~~v~li 148 (483)
|+++||+||| ||. |..+|..+++.|.+|.++
T Consensus 1 m~~~DvvVIG---------------------------------------~GpaG~~AA~~aa~~G~~V~li 32 (466)
T PRK06115 1 MASYDVVIIG---------------------------------------GGPGGYNAAIRAGQLGLKVACV 32 (466)
T ss_pred CCcccEEEEC---------------------------------------CCHHHHHHHHHHHhCCCeEEEE
No 188
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=22.95 E-value=4.6e+02 Score=27.41 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=26.0
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCC
Q 011562 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGP 272 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~ 272 (483)
+.++|++...........-+.++.+.|+++|+.+++|...
T Consensus 155 ~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~ 194 (437)
T PRK05613 155 NTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTI 194 (437)
T ss_pred cCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCC
Confidence 3556766533221112234678888889999999999964
No 189
>PRK05968 hypothetical protein; Provisional
Probab=22.89 E-value=1.9e+02 Score=29.55 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=32.0
Q ss_pred hcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCC
Q 011562 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGP 272 (483)
Q Consensus 231 l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~ 272 (483)
+.+.++|++..-.........+.++.+.|+++|+.+++|-..
T Consensus 145 i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~ 186 (389)
T PRK05968 145 LPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSW 186 (389)
T ss_pred cccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 456788888743333445578889999999999999999864
No 190
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=22.73 E-value=8.6e+02 Score=25.11 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=29.7
Q ss_pred cCCcEEEEecCCC-CCCCHHHHHHHHHHHHHcCCeEEEcCCCCC
Q 011562 232 KHSKVLFCNGYGF-DELSPALIISALEYAAQVGTSIFFDPGPRG 274 (483)
Q Consensus 232 ~~~~~v~isG~~~-~~~~~~~~~~li~~a~~~g~~v~~D~~~~~ 274 (483)
++.++|.++.-.. .+. ..-+.++.+.|+++|..|++|.....
T Consensus 161 ~~Tklvais~vSn~tG~-~~pv~~I~~la~~~ga~v~VDaaq~~ 203 (405)
T COG0520 161 PKTKLVALSHVSNVTGT-VNPVKEIAELAHEHGALVLVDAAQAA 203 (405)
T ss_pred CCceEEEEECccccccc-cchHHHHHHHHHHcCCEEEEECcccc
Confidence 3478888884322 222 22478999999999999999996543
No 191
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=22.68 E-value=1.2e+02 Score=32.09 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=40.4
Q ss_pred CCCccccCCc--HHHHHHHHHHcCCceEEEEEec------CChhhHHHHHHHHHcCCCcc
Q 011562 121 PDKQYWEAGG--NCNVAIAAARLGLDCVTIGHVG------NEIYGRFLLDVLQDEGIGMV 172 (483)
Q Consensus 121 ~~~~~~~GGg--~~NvA~~larLG~~v~lig~vG------~D~~g~~i~~~L~~~gId~~ 172 (483)
|.+-...||| +.=.|..+++||.+|+++-.-. +.+..+.+.+.|++.|++..
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~ 232 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKIL 232 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEE
Confidence 4556667888 5679999999999999997654 34578889999999777653
No 192
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=22.47 E-value=2e+02 Score=24.36 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=10.3
Q ss_pred ChhhHHHHHHHHHcCCCc
Q 011562 154 EIYGRFLLDVLQDEGIGM 171 (483)
Q Consensus 154 D~~g~~i~~~L~~~gId~ 171 (483)
|.++..+.+.|++.|.+.
T Consensus 18 d~n~~~l~~~l~~~G~~v 35 (133)
T cd00758 18 DTNGPALEALLEDLGCEV 35 (133)
T ss_pred EchHHHHHHHHHHCCCEE
Confidence 445666666666665443
No 193
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=22.23 E-value=45 Score=30.41 Aligned_cols=45 Identities=13% Similarity=0.171 Sum_probs=37.1
Q ss_pred CCCchHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHhcccCCCCC
Q 011562 361 TVGCGDSFVAAVAF-GFIHNMPTVNTLTIANAVGAATAMGCGAGRN 405 (483)
Q Consensus 361 ttGAGDaF~Ag~l~-gl~~g~~l~~al~~A~aaAa~~v~~~G~~~~ 405 (483)
--|.|-+|+=||+- .|-.|+++|||.+|-..+-++++.+-|...+
T Consensus 146 IgGSGStfIYGf~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGsSGG 191 (224)
T KOG0174|consen 146 IGGSGSTFIYGFCDANWRPNMTLEECVRFVKNAVSLAIERDGSSGG 191 (224)
T ss_pred eccCCceeeeeeehhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCC
Confidence 45889999888875 4567999999999999999999988886544
No 194
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=22.14 E-value=6.8e+02 Score=23.70 Aligned_cols=37 Identities=3% Similarity=-0.097 Sum_probs=24.0
Q ss_pred HHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEE
Q 011562 227 VKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFF 268 (483)
Q Consensus 227 ~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~ 268 (483)
..+.++++|+|+.. .-..+.-..+-+.|++.+++++.
T Consensus 108 ~~~~~~~~DlVvd~-----~D~~~~r~~ln~~~~~~~ip~v~ 144 (240)
T TIGR02355 108 LAALIAEHDIVVDC-----TDNVEVRNQLNRQCFAAKVPLVS 144 (240)
T ss_pred HHHHhhcCCEEEEc-----CCCHHHHHHHHHHHHHcCCCEEE
Confidence 34456778887765 22345555566778888888775
No 195
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=22.12 E-value=5.1e+02 Score=25.16 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEc---CHHHHHHhh--CC---------
Q 011562 246 ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLL---TSDEAESLT--GL--------- 311 (483)
Q Consensus 246 ~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~---N~~Ea~~l~--g~--------- 311 (483)
....+.+..+-+.+.+.|.+|+...-. .+.++....++|++-+ |...+..|- |.
T Consensus 92 Glge~gL~~l~~a~~~~Gl~vvtEvm~------------~~~~e~~~~y~DilqvGARNMQNF~LLke~G~~~kPvLLKR 159 (286)
T COG2876 92 GLGEEGLKLLKRAADETGLPVVTEVMD------------VRDVEAAAEYADILQVGARNMQNFALLKEVGRQNKPVLLKR 159 (286)
T ss_pred ccCHHHHHHHHHHHHHcCCeeEEEecC------------HHHHHHHHhhhhHHHhcccchhhhHHHHHhcccCCCeEEec
Confidence 444566666667777899998876521 2356677788998865 444444431 21
Q ss_pred ------CCHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCe
Q 011562 312 ------RNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSS 347 (483)
Q Consensus 312 ------~~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~ 347 (483)
++...++++++..|.+ ..|++ ++|+.-+++..
T Consensus 160 g~~aTieEwL~AAEYI~s~GN~-~vILC---ERGIRtfe~~T 197 (286)
T COG2876 160 GLSATIEEWLNAAEYILSHGNG-NVILC---ERGIRTFEKAT 197 (286)
T ss_pred CccccHHHHHHHHHHHHhCCCC-cEEEE---ecccccccccc
Confidence 1456688899998853 33444 56665555543
No 196
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=21.87 E-value=7.5e+02 Score=25.76 Aligned_cols=74 Identities=12% Similarity=0.121 Sum_probs=46.5
Q ss_pred HHHHhhcCCcEEEEec-CCCCCC-CHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHH
Q 011562 226 EVKTAIKHSKVLFCNG-YGFDEL-SPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSD 303 (483)
Q Consensus 226 ~~~~~l~~~~~v~isG-~~~~~~-~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~ 303 (483)
++...++++|+++..| ..+.+. ....+.. +-.|+..|.++++=+++.++. .....+.....+++++|.+..=+.
T Consensus 110 ~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y-~l~A~l~gkpv~l~gqsiGPf---~~~~~r~l~r~vl~~~~~ItvRD~ 185 (426)
T PRK10017 110 DFVRLLSGYDAIIQVGGSFFVDLYGVPQFEH-ALCAFMAKKPLYMIGHSVGPF---QDEQFNQLANYVFGHCDALILRES 185 (426)
T ss_pred HHHHHHHhCCEEEECCCCccccCcccHHHHH-HHHHHHcCCCEEEECCcCCCc---CCHHHHHHHHHHHhcCCEEEEccH
Confidence 4456789999988764 333322 2122222 335677899988866655431 234557777888999999987443
No 197
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=21.72 E-value=1.8e+02 Score=22.57 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=31.3
Q ss_pred HHHHHHHcCCceEEEEEecCChhhHHHHHHHHHcC
Q 011562 134 VAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEG 168 (483)
Q Consensus 134 vA~~larLG~~v~lig~vG~D~~g~~i~~~L~~~g 168 (483)
.+...+++|.++.|.++-++|-..+.+.+.|.+.|
T Consensus 26 ~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~rg 60 (78)
T PF10678_consen 26 KAAIIEKFGEDARFHTCSAEGMTADELVDFLEERG 60 (78)
T ss_pred HHHHHHHhCCCceEEecCCCCCCHHHHHHHHHHcC
Confidence 45567899999999999999999999999999876
No 198
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=21.69 E-value=6.1e+02 Score=23.51 Aligned_cols=81 Identities=11% Similarity=0.181 Sum_probs=46.5
Q ss_pred HHHHHhhcCCcEEEEecCCC-CCC--CHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcC--CCEEE
Q 011562 225 AEVKTAIKHSKVLFCNGYGF-DEL--SPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLST--SDVLL 299 (483)
Q Consensus 225 ~~~~~~l~~~~~v~isG~~~-~~~--~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~--~dil~ 299 (483)
..+.+.+..+|++++++... ..- ..+.+..++...++.|.++++-....+..+....++ ...++... +.+-.
T Consensus 89 ~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~---L~SRl~~Gl~~~l~~ 165 (219)
T PF00308_consen 89 EEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPD---LRSRLSWGLVVELQP 165 (219)
T ss_dssp HHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HH---HHHHHHCSEEEEE--
T ss_pred hhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChh---hhhhHhhcchhhcCC
Confidence 44556788999999998754 221 246788888889999999988776555444322222 22233222 33444
Q ss_pred cCHHHHHHh
Q 011562 300 LTSDEAESL 308 (483)
Q Consensus 300 ~N~~Ea~~l 308 (483)
|+.++...+
T Consensus 166 pd~~~r~~i 174 (219)
T PF00308_consen 166 PDDEDRRRI 174 (219)
T ss_dssp --HHHHHHH
T ss_pred CCHHHHHHH
Confidence 566665554
No 199
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=21.69 E-value=4.1e+02 Score=24.14 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=37.5
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcC-CCCCCCCCCCChHHHHHHHhhhc-CCCEEEcC
Q 011562 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDP-GPRGKSLSSGTPEEQRALSYFLS-TSDVLLLT 301 (483)
Q Consensus 232 ~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~-~~~~~~l~~~~~~~~~~l~~ll~-~~dil~~N 301 (483)
..+|++.+.+. .+...+.++++.++++|+++.++. ++.. ..+......+ .+|++.++
T Consensus 75 ~Gad~i~vh~~----~~~~~~~~~i~~~~~~g~~~~~~~~~~~t---------~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 75 AGADIVTVLGV----ADDATIKGAVKAAKKHGKEVQVDLINVKD---------KVKRAKELKELGADYIGVH 133 (206)
T ss_pred cCCCEEEEecc----CCHHHHHHHHHHHHHcCCEEEEEecCCCC---------hHHHHHHHHHcCCCEEEEc
Confidence 46888887742 334567889999999999999874 4311 1122333444 78999874
No 200
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=21.65 E-value=1.2e+02 Score=25.66 Aligned_cols=40 Identities=23% Similarity=0.388 Sum_probs=34.4
Q ss_pred CCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHHHHHHcCCCcc
Q 011562 128 AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMV 172 (483)
Q Consensus 128 GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~~L~~~gId~~ 172 (483)
.|.+.-+|..|...|.++.+++.+|.. -.+.|++.||++-
T Consensus 51 ~g~G~~~a~~l~~~gvdvvi~~~iG~~-----a~~~l~~~GIkv~ 90 (121)
T COG1433 51 KGAGIRIAELLVDEGVDVVIASNIGPN-----AYNALKAAGIKVY 90 (121)
T ss_pred CcchHHHHHHHHHcCCCEEEECccCHH-----HHHHHHHcCcEEE
Confidence 477888999999999999999998876 4678999999874
No 201
>PRK03670 competence damage-inducible protein A; Provisional
Probab=21.54 E-value=1.5e+02 Score=28.46 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=9.0
Q ss_pred cEEEEECC-eeEEecCccc
Q 011562 339 GSILVTKS-SISCAPAFKV 356 (483)
Q Consensus 339 G~~~~~~~-~~~~vpa~~v 356 (483)
|.++..++ ..+..|.+|.
T Consensus 144 G~~~~~~~~~v~~lPGvP~ 162 (252)
T PRK03670 144 GAYIEHKGTKIFVLPGMPR 162 (252)
T ss_pred eEEEEECCeEEEEeCCChH
Confidence 44444333 3556666653
No 202
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=21.52 E-value=5.5e+02 Score=23.46 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=26.4
Q ss_pred HHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEE
Q 011562 228 KTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFF 268 (483)
Q Consensus 228 ~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~ 268 (483)
.+.+++.|+++.+ ..+.+....+-+.|++++++++.
T Consensus 105 ~~~~~~~dvVi~~-----~~~~~~~~~ln~~c~~~~ip~i~ 140 (197)
T cd01492 105 EEFFSQFDVVVAT-----ELSRAELVKINELCRKLGVKFYA 140 (197)
T ss_pred HHHHhCCCEEEEC-----CCCHHHHHHHHHHHHHcCCCEEE
Confidence 3456788988876 23466777788889999998754
No 203
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=21.32 E-value=3.1e+02 Score=24.76 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHcCCeEEE
Q 011562 250 ALIISALEYAAQVGTSIFF 268 (483)
Q Consensus 250 ~~~~~li~~a~~~g~~v~~ 268 (483)
+.+..+++.+.+++.++++
T Consensus 35 dl~~~l~~~~~~~~~~vfl 53 (177)
T TIGR00696 35 DLMEELCQRAGKEKLPIFL 53 (177)
T ss_pred HHHHHHHHHHHHcCCeEEE
Confidence 4555555555555555554
No 204
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=21.20 E-value=4.2e+02 Score=29.41 Aligned_cols=91 Identities=18% Similarity=0.206 Sum_probs=45.0
Q ss_pred hcCCcEEEEecCCCCCCCHHHHHHHHHHHHHc-CCe-EEEcCCCCCCCCC----C-CCh-HHHHHHHhhhcCCCEEEcCH
Q 011562 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQV-GTS-IFFDPGPRGKSLS----S-GTP-EEQRALSYFLSTSDVLLLTS 302 (483)
Q Consensus 231 l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~-g~~-v~~D~~~~~~~l~----~-~~~-~~~~~l~~ll~~~dil~~N~ 302 (483)
++++|++++-|..+.+..+-.... +..|+++ |.+ |++||......-. - ..+ .....+..++.++ +.-+.
T Consensus 167 i~nAd~Ili~GsNpae~hPv~~~~-i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~l~irPGTD~All~gmi~~i--i~ytp 243 (649)
T cd02752 167 IKNADVILVMGGNPAEAHPVSFKW-ILEAKEKNGAKLIVVDPRFTRTAAKADLYVPIRSGTDIAFLGGMINYI--IRYTP 243 (649)
T ss_pred HhcCCEEEEECCChHHhCcHHHHH-HHHHHHcCCCeEEEEcCCCCchhHhcCEeeCcCCChHHHHHHHHHHHH--HhCCH
Confidence 578999999887654333323333 4445554 754 6789964321000 0 000 0011111111110 12356
Q ss_pred HHHHHhhCCC--CHHHHHHHHHHc
Q 011562 303 DEAESLTGLR--NPITAGQELLRK 324 (483)
Q Consensus 303 ~Ea~~l~g~~--~~~~~~~~l~~~ 324 (483)
+++..++|.+ ++.++++.+.+.
T Consensus 244 e~v~~itGvp~e~I~~~A~~~a~a 267 (649)
T cd02752 244 EEVEDICGVPKEDFLKVAEMFAAT 267 (649)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhc
Confidence 7788888875 456667767654
No 205
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=21.12 E-value=1.3e+02 Score=23.74 Aligned_cols=39 Identities=31% Similarity=0.482 Sum_probs=31.5
Q ss_pred CcHHHHHHHHHHcCCceEEEEEecCChhhHHHHHHHHHcCCCcc
Q 011562 129 GGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMV 172 (483)
Q Consensus 129 Gg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~~L~~~gId~~ 172 (483)
|.+...+..|...|+++.+++.+|.. ..+.|++.||...
T Consensus 50 ~~~~~~~~~l~~~~v~~vi~~~iG~~-----~~~~l~~~gI~v~ 88 (103)
T cd00851 50 GAGGKAAEFLADEGVDVVIVGGIGPR-----ALNKLRNAGIKVY 88 (103)
T ss_pred CCchHHHHHHHHcCCCEEEeCCCCcC-----HHHHHHHCCCEEE
Confidence 44567888888899999999988866 5788889999764
No 206
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=21.02 E-value=1.2e+02 Score=31.45 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=0.0
Q ss_pred CCCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCc-HHHHHHHHHHcCCceEEE
Q 011562 79 VKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGG-NCNVAIAAARLGLDCVTI 148 (483)
Q Consensus 79 ~~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg-~~NvA~~larLG~~v~li 148 (483)
|+..||+||| ||. |..+|..|++.|.+|.++
T Consensus 1 ~~~yDvvVIG---------------------------------------gGpaGl~aA~~la~~g~~V~li 32 (441)
T PRK08010 1 MNKYQAVIIG---------------------------------------FGKAGKTLAVTLAKAGWRVALI 32 (441)
T ss_pred CCcCCEEEEC---------------------------------------CCHhHHHHHHHHHHCCCeEEEE
No 207
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=20.83 E-value=52 Score=25.71 Aligned_cols=40 Identities=28% Similarity=0.489 Sum_probs=31.6
Q ss_pred CCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHHHHHHcCCCcc
Q 011562 128 AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMV 172 (483)
Q Consensus 128 GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~~L~~~gId~~ 172 (483)
+|.+...+..+...|+++.+++.+|.. ..+.|++.||...
T Consensus 39 ~~~~~~~~~~l~~~~v~~li~~~iG~~-----~~~~L~~~gI~v~ 78 (94)
T PF02579_consen 39 GGGGDKIAKFLAEEGVDVLICGGIGEG-----AFRALKEAGIKVY 78 (94)
T ss_dssp SCHSTHHHHHHHHTTESEEEESCSCHH-----HHHHHHHTTSEEE
T ss_pred cccchhHHHHHHHcCCCEEEEeCCCHH-----HHHHHHHCCCEEE
Confidence 355667788888899999999987655 6788999999763
No 208
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=20.80 E-value=7.4e+02 Score=23.61 Aligned_cols=49 Identities=27% Similarity=0.269 Sum_probs=29.6
Q ss_pred cccCCcHH-HHHHHHHHcCCce---EEEEEecCChhhHHHHHHHHHcCCCccce
Q 011562 125 YWEAGGNC-NVAIAAARLGLDC---VTIGHVGNEIYGRFLLDVLQDEGIGMVGM 174 (483)
Q Consensus 125 ~~~GGg~~-NvA~~larLG~~v---~lig~vG~D~~g~~i~~~L~~~gId~~~v 174 (483)
...|||.. .-....+ .|.+- -.+|.+..=-++..+.+.|++.||++...
T Consensus 49 iVvGGGni~Rg~~~~~-~g~~r~~~D~mGmlaTvmNal~L~~aL~~~~~~~~v~ 101 (238)
T COG0528 49 VVVGGGNIARGYIGAA-AGMDRVTADYMGMLATVMNALALQDALERLGVDTRVQ 101 (238)
T ss_pred EEECCCHHHHhHHHHH-cCCchhhhhHHHHHHHHHHHHHHHHHHHhcCCcceec
Confidence 34566632 2222222 36543 34555556667889999999999998644
No 209
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=20.67 E-value=8.8e+02 Score=24.46 Aligned_cols=74 Identities=12% Similarity=0.035 Sum_probs=37.0
Q ss_pred HHHHHhhcC-----CcEEEEecCCCCCCCHHHHHHHHHHHHHc-C-CeEE--EcCCCCCCCCCCCChHHHHHHHhhhcCC
Q 011562 225 AEVKTAIKH-----SKVLFCNGYGFDELSPALIISALEYAAQV-G-TSIF--FDPGPRGKSLSSGTPEEQRALSYFLSTS 295 (483)
Q Consensus 225 ~~~~~~l~~-----~~~v~isG~~~~~~~~~~~~~li~~a~~~-g-~~v~--~D~~~~~~~l~~~~~~~~~~l~~ll~~~ 295 (483)
+.+.+.++. .|.+++...+-+.........+++.+++. + ..+. .-|..... ..........+..+.+.+
T Consensus 84 e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~~~~~~~~iv~~P~~~eg--~~~~~NA~~~l~~L~~~~ 161 (349)
T cd02202 84 EEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELKERYEEPVYALGVLPAREEG--ERYSANAARSLDALSEEA 161 (349)
T ss_pred HHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHHHhCCccEEEEEEecCCCCC--chhhHHHHHHHHHHHHhC
Confidence 345555655 66777664333333333444556666664 3 2222 23322110 111223455678888899
Q ss_pred CEEEc
Q 011562 296 DVLLL 300 (483)
Q Consensus 296 dil~~ 300 (483)
|.+++
T Consensus 162 D~viv 166 (349)
T cd02202 162 DAIIL 166 (349)
T ss_pred CEEEE
Confidence 97765
No 210
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=20.51 E-value=7.5e+02 Score=23.59 Aligned_cols=28 Identities=29% Similarity=0.579 Sum_probs=20.8
Q ss_pred EEEEecCChhhHHHHHHHHHcCCCccce
Q 011562 147 TIGHVGNEIYGRFLLDVLQDEGIGMVGM 174 (483)
Q Consensus 147 lig~vG~D~~g~~i~~~L~~~gId~~~v 174 (483)
.+|.+|-...|+++.+.+++.-++...+
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v 29 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELV 29 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEE
Confidence 3678888889999999998764555444
No 211
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=20.49 E-value=1.1e+02 Score=33.31 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCceEEEE
Q 011562 131 NCNVAIAAARLGLDCVTIG 149 (483)
Q Consensus 131 ~~NvA~~larLG~~v~lig 149 (483)
|.-+|+.+++.|.+|.++.
T Consensus 15 Gl~AAi~Aa~~G~~V~lie 33 (589)
T PRK08641 15 GLMATIKAAEAGVHVDLFS 33 (589)
T ss_pred HHHHHHHHHHcCCcEEEEE
Confidence 5678888888898888876
No 212
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=20.42 E-value=6.9e+02 Score=23.11 Aligned_cols=84 Identities=19% Similarity=0.289 Sum_probs=50.3
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEc-----CHHHHHHhh
Q 011562 235 KVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLL-----TSDEAESLT 309 (483)
Q Consensus 235 ~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~-----N~~Ea~~l~ 309 (483)
+.|.++| .-+-+.++.+.++++.+++.|..+.+..+.... .. .+.+.+++...|.+.+ +.+....+.
T Consensus 67 ~~I~~~G-GEPll~~~~~~~li~~~~~~g~~~~i~TNG~~~----~~---~~~~~~ll~~~d~v~isl~~~~~~~~~~~~ 138 (235)
T TIGR02493 67 GGVTFSG-GEPLLQPEFLSELFKACKELGIHTCLDTSGFLG----GC---TEAADELLEYTDLVLLDIKHFNPEKYKKLT 138 (235)
T ss_pred CeEEEeC-cccccCHHHHHHHHHHHHHCCCCEEEEcCCCCC----cc---HHHHHHHHHhCCEEEEeCCCCCHHHHHHHH
Confidence 4677776 222345677789999999999988888876311 00 1234455666676654 444445555
Q ss_pred CCC--CHHHHHHHHHHcCC
Q 011562 310 GLR--NPITAGQELLRKGL 326 (483)
Q Consensus 310 g~~--~~~~~~~~l~~~g~ 326 (483)
|.. ...+..+.+.+.|.
T Consensus 139 g~~~~~v~~~i~~l~~~g~ 157 (235)
T TIGR02493 139 GVSLQPTLDFAKYLAKRNK 157 (235)
T ss_pred CCCcHHHHHHHHHHHhCCC
Confidence 542 24455666666654
No 213
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=20.29 E-value=8.6e+02 Score=24.20 Aligned_cols=82 Identities=13% Similarity=0.075 Sum_probs=49.2
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEc-----CHHHHHHh
Q 011562 234 SKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLL-----TSDEAESL 308 (483)
Q Consensus 234 ~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~-----N~~Ea~~l 308 (483)
.+.+.+++..-+-+ ...+.++++.+++.|+.+.++.++.. + +.++.+....|.+.+ +.+....+
T Consensus 130 ~~~v~iSl~GEPlL-~p~l~eli~~~k~~Gi~~~L~TNG~~-------~---e~l~~L~~~~d~i~VSLda~~~e~~~~i 198 (322)
T PRK13762 130 PKHVAISLSGEPTL-YPYLPELIEEFHKRGFTTFLVTNGTR-------P---DVLEKLEEEPTQLYVSLDAPDEETYKKI 198 (322)
T ss_pred CCEEEEeCCccccc-hhhHHHHHHHHHHcCCCEEEECCCCC-------H---HHHHHHHhcCCEEEEEccCCCHHHHHHH
Confidence 45677776542223 34688999999999999999998631 2 234444444555433 45556666
Q ss_pred hCC--C-C---HHHHHHHHHHcCC
Q 011562 309 TGL--R-N---PITAGQELLRKGL 326 (483)
Q Consensus 309 ~g~--~-~---~~~~~~~l~~~g~ 326 (483)
.+. . . ..+.++.+.+.+.
T Consensus 199 ~~~~~~~~~~~vl~~L~~l~~~~~ 222 (322)
T PRK13762 199 NRPVIPDAWERILETLELLPSKKT 222 (322)
T ss_pred hCCCCCCcHHHHHHHHHHHHhCCC
Confidence 652 2 2 3455555655543
No 214
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=20.11 E-value=3.4e+02 Score=27.26 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHHcCCeEEEcC
Q 011562 246 ELSPALIISALEYAAQVGTSIFFDP 270 (483)
Q Consensus 246 ~~~~~~~~~li~~a~~~g~~v~~D~ 270 (483)
+++.+.+..+.+.|++.|+.++-.|
T Consensus 72 ~l~~e~~~~L~~~~~~~Gi~~~stp 96 (329)
T TIGR03569 72 ELSEEDHRELKEYCESKGIEFLSTP 96 (329)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEe
Confidence 5678889999999999999999877
No 215
>PRK15447 putative protease; Provisional
Probab=20.02 E-value=8.4e+02 Score=23.96 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=47.2
Q ss_pred cCCcEEEEecCCC---CCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcC-CC-EEEcCHHHHH
Q 011562 232 KHSKVLFCNGYGF---DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLST-SD-VLLLTSDEAE 306 (483)
Q Consensus 232 ~~~~~v~isG~~~---~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~-~d-il~~N~~Ea~ 306 (483)
..+|.|++..-.. .+...+.+.++++.++++|++|++-...-. . .++..+.+.+++.. .| ++.-|..++.
T Consensus 27 ~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~---~--~~~e~~~l~~~l~~~~~~v~v~d~g~l~ 101 (301)
T PRK15447 27 SPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALV---E--APSELKELRRLVENGEFLVEANDLGAVR 101 (301)
T ss_pred CCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccc---c--CHHHHHHHHHHHhcCCCEEEEeCHHHHH
Confidence 3699999985432 257889999999999999999998553210 0 12234445555543 45 4455777766
Q ss_pred Hhh
Q 011562 307 SLT 309 (483)
Q Consensus 307 ~l~ 309 (483)
.+-
T Consensus 102 ~~~ 104 (301)
T PRK15447 102 LLA 104 (301)
T ss_pred HHH
Confidence 554
Done!