Query 011562
Match_columns 483
No_of_seqs 338 out of 1772
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 10:43:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iq0_A Putative ribokinase II; 100.0 1.3E-46 4.5E-51 377.0 28.3 320 79-429 1-323 (330)
2 3pl2_A Sugar kinase, ribokinas 100.0 2E-45 6.8E-50 366.5 31.2 310 79-418 6-317 (319)
3 3ry7_A Ribokinase; transferase 100.0 4.8E-46 1.7E-50 368.4 26.0 295 81-414 2-303 (304)
4 3ljs_A Fructokinase; fructokia 100.0 1.9E-46 6.6E-51 377.0 20.5 308 80-419 3-329 (338)
5 1rkd_A Ribokinase; carbohydrat 100.0 4.4E-45 1.5E-49 362.4 29.8 300 80-418 3-307 (309)
6 3ktn_A Carbohydrate kinase, PF 100.0 7.8E-45 2.7E-49 366.4 29.9 317 81-430 2-345 (346)
7 4du5_A PFKB; structural genomi 100.0 9E-45 3.1E-49 364.6 29.8 304 80-415 25-334 (336)
8 2rbc_A Sugar kinase, AGR_C_456 100.0 5.4E-45 1.8E-49 367.1 28.2 304 80-424 28-334 (343)
9 3h49_A Ribokinase; transferase 100.0 1.5E-44 5E-49 361.4 31.0 304 79-421 3-317 (325)
10 3kzh_A Probable sugar kinase; 100.0 4.2E-45 1.4E-49 365.8 26.4 304 80-423 5-314 (328)
11 3go6_A Ribokinase RBSK; phosph 100.0 5.3E-45 1.8E-49 362.1 25.9 287 78-420 16-306 (310)
12 4e3a_A Sugar kinase protein; s 100.0 9.6E-45 3.3E-49 366.5 27.6 311 78-414 22-348 (352)
13 2c4e_A Sugar kinase MJ0406; tr 100.0 8.4E-45 2.9E-49 359.4 24.0 297 80-420 4-301 (302)
14 3hj6_A Fructokinase, FRK; fruc 100.0 2.7E-46 9.4E-51 374.2 13.3 306 80-417 20-326 (327)
15 3ikh_A Carbohydrate kinase; tr 100.0 7.1E-45 2.4E-49 359.4 22.6 289 81-422 2-292 (299)
16 2qcv_A Putative 5-dehydro-2-de 100.0 2.2E-43 7.4E-48 353.8 32.5 311 79-419 9-326 (332)
17 3vas_A Putative adenosine kina 100.0 7.8E-45 2.7E-49 369.6 22.2 305 78-413 21-365 (370)
18 2v78_A Fructokinase; transfera 100.0 6.9E-44 2.4E-48 354.5 27.8 305 81-419 1-311 (313)
19 3ie7_A LIN2199 protein; phosph 100.0 1.5E-43 5.2E-48 353.1 29.5 301 82-424 3-309 (320)
20 2fv7_A Ribokinase; structural 100.0 4.5E-44 1.5E-48 358.8 25.1 297 80-414 23-328 (331)
21 2jg1_A Tagatose-6-phosphate ki 100.0 1.2E-43 3.9E-48 355.6 27.7 300 80-421 19-327 (330)
22 2dcn_A Hypothetical fructokina 100.0 1.7E-43 5.7E-48 351.4 26.2 302 82-419 2-309 (311)
23 1tyy_A Putative sugar kinase; 100.0 1.8E-44 6.3E-49 362.7 19.4 302 81-420 24-331 (339)
24 1vm7_A Ribokinase; TM0960, str 100.0 4.9E-43 1.7E-47 348.2 29.1 291 81-418 14-310 (311)
25 3umo_A 6-phosphofructokinase i 100.0 8.8E-43 3E-47 345.9 30.6 295 84-419 4-307 (309)
26 2f02_A Tagatose-6-phosphate ki 100.0 2.8E-43 9.6E-48 351.8 26.8 299 82-422 3-311 (323)
27 1v1a_A 2-keto-3-deoxygluconate 100.0 5.3E-43 1.8E-47 347.5 27.5 300 81-418 1-303 (309)
28 2ajr_A Sugar kinase, PFKB fami 100.0 1.4E-43 4.7E-48 355.2 23.1 303 80-421 11-327 (331)
29 2nwh_A AGR_C_3442P, carbohydra 100.0 5E-43 1.7E-47 349.0 26.9 303 81-420 3-309 (317)
30 3cqd_A 6-phosphofructokinase i 100.0 1.8E-42 6.1E-47 343.7 30.4 295 83-419 3-307 (309)
31 3lhx_A Ketodeoxygluconokinase; 100.0 9E-43 3.1E-47 347.4 27.6 287 82-403 5-303 (319)
32 4e69_A 2-dehydro-3-deoxyglucon 100.0 1.2E-42 4.1E-47 347.9 28.3 289 80-403 22-316 (328)
33 3otx_A Adenosine kinase, putat 100.0 3.8E-43 1.3E-47 354.2 24.7 306 80-408 6-341 (347)
34 2abq_A Fructose 1-phosphate ki 100.0 4.4E-42 1.5E-46 340.4 29.9 296 83-424 2-303 (306)
35 4e84_A D-beta-D-heptose 7-phos 100.0 1.1E-42 3.6E-47 351.4 25.8 291 78-413 50-351 (352)
36 3loo_A Anopheles gambiae adeno 100.0 2E-43 6.9E-48 358.7 19.1 305 79-403 21-354 (365)
37 3b1n_A Ribokinase, putative; r 100.0 3.9E-42 1.4E-46 343.9 27.4 291 82-418 1-305 (326)
38 2pkf_A Adenosine kinase; trans 100.0 1.7E-42 6E-47 347.6 23.9 297 81-419 10-320 (334)
39 3ewm_A Uncharacterized sugar k 100.0 6.5E-42 2.2E-46 340.3 27.0 299 81-421 1-303 (313)
40 4gm6_A PFKB family carbohydrat 100.0 3.4E-42 1.2E-46 347.7 24.2 311 80-419 23-345 (351)
41 2jg5_A Fructose 1-phosphate ki 100.0 1.5E-41 5E-46 336.5 27.3 295 82-422 1-301 (306)
42 1bx4_A Protein (adenosine kina 100.0 1.9E-41 6.4E-46 341.5 21.8 302 80-403 5-337 (345)
43 3uq6_A Adenosine kinase, putat 100.0 6E-41 2E-45 341.3 25.0 315 81-415 26-369 (372)
44 2hlz_A Ketohexokinase; non-pro 100.0 1E-39 3.4E-44 324.4 29.2 282 79-402 15-308 (312)
45 2afb_A 2-keto-3-deoxygluconate 100.0 2.8E-39 9.6E-44 326.4 32.6 303 80-418 11-343 (351)
46 2qhp_A Fructokinase; NP_810670 100.0 5.4E-40 1.9E-44 323.7 26.4 278 81-407 3-288 (296)
47 3bf5_A Ribokinase related prot 100.0 2E-41 6.8E-46 335.7 13.8 280 80-419 19-301 (306)
48 3kd6_A Carbohydrate kinase, PF 100.0 4.5E-40 1.5E-44 327.1 23.3 298 81-430 2-311 (313)
49 2abs_A Adenosine kinase, AK; r 100.0 2.8E-39 9.4E-44 330.4 24.7 298 80-403 31-375 (383)
50 1vk4_A PFKB carbohydrate kinas 100.0 1.9E-35 6.4E-40 291.7 19.5 277 84-413 14-293 (298)
51 2ddm_A Pyridoxine kinase; pyri 99.9 5.7E-24 2E-28 207.9 16.4 230 141-400 19-267 (283)
52 2yxt_A Pyridoxal kinase; beta 99.9 8.1E-24 2.8E-28 209.7 16.1 223 144-399 12-269 (312)
53 1jxh_A Phosphomethylpyrimidine 99.9 7.3E-22 2.5E-26 193.4 15.9 160 233-400 94-269 (288)
54 1ub0_A THID, phosphomethylpyri 99.9 1.3E-20 4.5E-25 181.4 20.1 160 233-400 70-244 (258)
55 2i5b_A Phosphomethylpyrimidine 99.8 7E-20 2.4E-24 177.6 22.1 162 233-400 74-250 (271)
56 3pzs_A PM kinase, pyridoxamine 99.8 1.1E-19 3.8E-24 177.9 15.0 166 231-399 75-259 (289)
57 3mbh_A Putative phosphomethylp 99.8 2E-18 7E-23 169.0 18.5 163 233-399 77-258 (291)
58 3h74_A Pyridoxal kinase; PSI-I 99.8 1.2E-17 4.1E-22 162.7 18.9 161 233-399 74-248 (282)
59 3zs7_A Pyridoxal kinase; trans 99.8 1.3E-17 4.6E-22 163.8 19.2 175 219-399 60-261 (300)
60 1ekq_A Hydroxyethylthiazole ki 99.6 1.8E-14 6.2E-19 139.4 16.0 159 230-398 55-234 (272)
61 3rm5_A Hydroxymethylpyrimidine 99.5 2.5E-13 8.5E-18 144.1 15.4 153 233-393 91-269 (550)
62 1v8a_A Hydroxyethylthiazole ki 99.2 6.4E-11 2.2E-15 113.9 12.9 155 227-392 50-220 (265)
63 2r3b_A YJEF-related protein; p 99.0 7.5E-09 2.6E-13 101.5 15.2 144 230-397 108-266 (310)
64 3bgk_A SMU.573, putative uncha 99.0 2.1E-09 7.1E-14 105.5 10.9 163 230-418 122-304 (311)
65 3dzv_A 4-methyl-5-(beta-hydrox 98.9 3.6E-08 1.2E-12 94.5 18.1 159 225-392 50-229 (273)
66 3rpz_A ADP/ATP-dependent NAD(P 98.8 9.7E-08 3.3E-12 92.0 17.2 167 231-418 96-273 (279)
67 3rss_A Putative uncharacterize 98.8 1.5E-07 5.1E-12 98.0 18.2 175 226-418 313-495 (502)
68 3nl6_A Thiamine biosynthetic b 98.3 3.6E-05 1.2E-09 80.7 20.5 158 223-392 295-495 (540)
69 3hpd_A Hydroxyethylthiazole ki 98.3 1.1E-05 3.6E-10 76.7 13.9 156 226-391 49-219 (265)
70 3drw_A ADP-specific phosphofru 98.1 1.3E-05 4.5E-10 81.8 11.5 176 123-310 112-318 (474)
71 1ua4_A Glucokinase, ADP-depend 97.9 4.3E-05 1.5E-09 78.1 10.3 171 125-309 108-300 (455)
72 1l2l_A ADP-dependent glucokina 97.6 0.0002 6.8E-09 73.0 9.2 74 229-308 224-302 (457)
73 3k5w_A Carbohydrate kinase; 11 97.5 0.00047 1.6E-08 71.0 10.9 166 232-420 291-468 (475)
74 1gc5_A ADP-dependent glucokina 97.4 0.001 3.5E-08 67.9 12.2 168 126-308 117-312 (467)
75 2l82_A Designed protein OR32; 78.4 20 0.00068 28.2 9.5 121 134-304 18-139 (162)
76 3can_A Pyruvate-formate lyase- 62.4 67 0.0023 27.3 10.8 82 235-326 5-93 (182)
77 4fk1_A Putative thioredoxin re 48.8 14 0.00049 34.6 4.3 19 131-149 18-36 (304)
78 2lbf_A 60S acidic ribosomal pr 43.7 67 0.0023 23.2 6.1 56 387-446 6-61 (69)
79 2cul_A Glucose-inhibited divis 43.0 23 0.0008 31.7 4.6 23 128-150 10-34 (232)
80 3iwt_A 178AA long hypothetical 39.4 59 0.002 27.9 6.4 21 154-174 39-59 (178)
81 4dxd_A Cell division protein F 39.3 38 0.0013 33.4 5.6 139 128-300 26-169 (396)
82 1w5f_A Cell division protein F 39.3 87 0.003 30.4 8.2 78 220-300 92-173 (353)
83 4h3d_A 3-dehydroquinate dehydr 39.0 1.8E+02 0.0061 26.7 10.0 97 233-341 113-215 (258)
84 2vap_A FTSZ, cell division pro 37.9 1.2E+02 0.0041 29.5 9.0 81 221-304 109-195 (364)
85 3o1n_A 3-dehydroquinate dehydr 37.3 1.9E+02 0.0066 26.8 10.0 95 234-340 134-234 (276)
86 3c8f_A Pyruvate formate-lyase 36.9 1.9E+02 0.0065 25.3 9.9 85 234-326 70-161 (245)
87 3oz2_A Digeranylgeranylglycero 36.7 23 0.00079 34.0 3.7 21 128-148 11-33 (397)
88 1qyd_A Pinoresinol-lariciresin 36.7 2.2E+02 0.0074 26.0 10.6 20 131-150 17-36 (313)
89 2fcj_A Small toprim domain pro 35.5 28 0.00097 28.1 3.3 78 233-325 26-105 (119)
90 3kbq_A Protein TA0487; structu 35.4 58 0.002 28.1 5.6 20 154-173 22-41 (172)
91 3i6i_A Putative leucoanthocyan 35.4 1.2E+02 0.0041 28.5 8.7 22 131-152 23-44 (346)
92 3iz5_t 60S acidic ribosomal pr 29.7 42 0.0014 26.7 3.4 61 387-451 5-65 (110)
93 1ztd_A Hypothetical protein PF 29.4 56 0.0019 25.8 3.9 30 359-388 64-94 (133)
94 1rq2_A Cell division protein F 28.7 1.3E+02 0.0043 29.6 7.4 78 220-300 82-163 (382)
95 2ywl_A Thioredoxin reductase r 27.9 51 0.0017 27.8 4.0 44 128-171 8-73 (180)
96 2vxy_A FTSZ, cell division pro 26.1 74 0.0025 31.2 5.2 88 220-310 82-174 (382)
97 3qtg_A Pyruvate kinase, PK; TI 26.0 3.2E+02 0.011 27.4 9.9 140 138-322 192-339 (461)
98 1sfl_A 3-dehydroquinate dehydr 25.4 3.7E+02 0.013 24.1 10.6 96 233-341 97-200 (238)
99 3mvn_A UDP-N-acetylmuramate:L- 24.4 2.8E+02 0.0095 23.0 8.1 26 313-339 124-149 (163)
100 3rp8_A Flavoprotein monooxygen 24.2 58 0.002 31.6 4.2 20 131-150 35-54 (407)
101 3izc_t 60S acidic ribosomal pr 23.2 76 0.0026 25.0 3.8 57 387-447 4-60 (106)
102 1jw9_B Molybdopterin biosynthe 22.8 3E+02 0.01 24.7 8.6 36 228-268 116-151 (249)
103 2yci_X 5-methyltetrahydrofolat 22.7 4.5E+02 0.015 24.1 9.9 91 231-339 45-137 (271)
104 2re2_A Uncharacterized protein 22.7 36 0.0012 28.1 1.9 39 128-172 65-103 (136)
105 3i3l_A Alkylhalidase CMLS; fla 22.3 63 0.0021 33.7 4.1 38 131-169 35-79 (591)
106 1zud_1 Adenylyltransferase THI 22.3 4.2E+02 0.014 23.8 9.4 35 228-267 113-147 (251)
107 4ei7_A Plasmid replication pro 22.2 1.8E+02 0.006 28.6 7.1 40 229-268 107-146 (389)
108 1y5e_A Molybdenum cofactor bio 22.2 1.1E+02 0.0039 25.8 5.2 21 153-173 29-49 (169)
109 4hv4_A UDP-N-acetylmuramate--L 22.0 88 0.003 31.7 5.1 39 128-171 31-70 (494)
110 3a1y_A 50S ribosomal protein P 21.9 1.1E+02 0.0038 21.1 4.0 51 390-444 3-53 (58)
111 3r3s_A Oxidoreductase; structu 21.5 4.6E+02 0.016 23.8 11.6 40 131-170 62-101 (294)
112 4gmf_A Yersiniabactin biosynth 21.4 5.2E+02 0.018 24.8 10.4 42 228-273 88-129 (372)
113 4g81_D Putative hexonate dehyd 20.4 2.9E+02 0.01 25.0 7.9 42 131-174 22-63 (255)
114 3s55_A Putative short-chain de 20.4 4.7E+02 0.016 23.4 11.6 20 131-150 23-42 (281)
115 1qyc_A Phenylcoumaran benzylic 20.3 3.2E+02 0.011 24.8 8.4 20 131-150 17-36 (308)
116 3ihm_A Styrene monooxygenase A 20.1 62 0.0021 32.0 3.4 23 128-150 29-53 (430)
No 1
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} SCOP: c.72.1.0 PDB: 3k9e_A
Probab=100.00 E-value=1.3e-46 Score=376.96 Aligned_cols=320 Identities=21% Similarity=0.254 Sum_probs=250.8
Q ss_pred CCCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhH
Q 011562 79 VKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGR 158 (483)
Q Consensus 79 ~~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~ 158 (483)
|+|++|+|+|++++|++...+. .+.... . .....++||+++|+|+++++||.++.++|.+|+|.+|+
T Consensus 1 m~m~~i~viG~~~~D~~~~~~~---~~~~~~-----~-----~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~ 67 (330)
T 3iq0_A 1 MSLSKVFTIGEILVEIMASKIG---QPFDQP-----G-----IWNGPYPSGAPAIFIDQVTRLGVPCGIISCVGNDGFGD 67 (330)
T ss_dssp ---CEEEEESCCEEEEEEEEET---CCSSSC-----E-----EEEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHH
T ss_pred CCCCCEEEEcceeEEEeccCCC---CCcccc-----c-----cccCcCCCCHHHHHHHHHHHCCCcEEEEEEeCCChHHH
Confidence 4567899999999999986322 111100 0 01134568999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCccc-ccccC-CCCChhhhhhhhccHHHHHhhcCCcE
Q 011562 159 FLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGF-CSRAD-FSKEPAFSWMNKLSAEVKTAIKHSKV 236 (483)
Q Consensus 159 ~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~-~~~~~-~~~~~~~~~~~~l~~~~~~~l~~~~~ 236 (483)
++++.|++.||+++++.+.++. +|+.+++.++++|++.+ +.+.. ....... +.+. ...++++++
T Consensus 68 ~i~~~l~~~gv~~~~v~~~~~~--------~T~~~~i~~~~~g~~~~~~~~~~~a~~~~~~---~~~~---~~~~~~~~~ 133 (330)
T 3iq0_A 68 INIHRLAADGVDIRGISVLPLE--------ATGSAFVTYHNSGDRDFIFNIKNAACGKLSA---QHVD---ENILKDCTH 133 (330)
T ss_dssp HHHHHHHHTTCBCTTEEEETTS--------CCEEEEEEECC---CEEEEECTTSGGGGCCG---GGCC---GGGGTTEEE
T ss_pred HHHHHHHHcCCCeeeEEEcCCC--------CceEEEEEECCCCCeeEEEeccCChhhhCCH---hhCC---HhHhccCCE
Confidence 9999999999999999776554 38889999998888843 22221 1111111 1111 135788999
Q ss_pred EEEecCCC-CCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHH
Q 011562 237 LFCNGYGF-DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPI 315 (483)
Q Consensus 237 v~isG~~~-~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~ 315 (483)
+|++|+.+ .+...+.+.++++.++++|+++++||+++... |. .+..++.+.++++++|++++|++|++.|+|..++.
T Consensus 134 v~~sg~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~-~~-~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~ 211 (330)
T 3iq0_A 134 FHIMGSSLFSFHMVDAVKKAVTIVKANGGVISFDPNIRKEM-LD-IPEMRDALHFVLELTDIYMPSEGEVLLLSPHSTPE 211 (330)
T ss_dssp EEEEGGGCSSHHHHHHHHHHHHHHHHTTCEEEEECCCCGGG-GG-SHHHHHHHHHHHHTCSEECCBGGGTTTTCSCSSHH
T ss_pred EEEechhhcCcchHHHHHHHHHHHHHcCCEEEEcCCCCccc-cC-cHHHHHHHHHHHhhCCEEecCHHHHHHHhCCCCHH
Confidence 99999875 23334678899999999999999999877642 22 23456778899999999999999999999999999
Q ss_pred HHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 011562 316 TAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAA 395 (483)
Q Consensus 316 ~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~ 395 (483)
++++.|++.|+ +.||||+|++|++++++++.+++|+++++++|||||||+|+|||+++|++|+++++|+++|+++|++
T Consensus 212 ~~~~~l~~~g~--~~vvvT~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~aa~ 289 (330)
T 3iq0_A 212 RAIAGFLEEGV--KEVIVKRGNQGASYYSANEQFHVESYPVEEVDPTGAGDCFGGAWIACRQLGFDAHRALQYANACGAL 289 (330)
T ss_dssp HHHHHHHHHTC--SEEEEECGGGCEEEECSSCEEEECCCCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--CEEEEEeCCCceEEEECCceEEecCCCCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999876 7899999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCCCCHHHHHHHHHhcCCCcchhhHH
Q 011562 396 TAMGCGAGRNVATLERVIELMRASNLNEDNAFWN 429 (483)
Q Consensus 396 ~v~~~G~~~~~p~~~ev~~~l~~~~~~~~~~~~~ 429 (483)
++++.|+..++|+++||++++++...+.+...|.
T Consensus 290 ~v~~~G~~~~~p~~~ev~~~~~~~~~~i~~~~~~ 323 (330)
T 3iq0_A 290 AVTRRGPMEGTSRLMEIETFIQRHDMSIREAAQE 323 (330)
T ss_dssp HTTSCSSSTTCCCHHHHHHHHHHC----------
T ss_pred HHcCcCCCCCCCCHHHHHHHHHhcccchhHHHhc
Confidence 9999998778999999999999987766655564
No 2
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} SCOP: c.72.1.0
Probab=100.00 E-value=2e-45 Score=366.54 Aligned_cols=310 Identities=24% Similarity=0.346 Sum_probs=252.0
Q ss_pred CCCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhH
Q 011562 79 VKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGR 158 (483)
Q Consensus 79 ~~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~ 158 (483)
|++++|+|+|++++|++...+..|.... ......+||++.|+|++|++||.++.++|.+|+|.+|+
T Consensus 6 ~~~~~v~~iG~~~~D~~~~~~~~p~~~~--------------~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~ 71 (319)
T 3pl2_A 6 TSTHEVLAIGRLGVDIYPLQSGVGLADV--------------QSFGKYLGGSAANVSVAAARHGHNSALLSRVGNDPFGE 71 (319)
T ss_dssp -CCCSEEEESCCEEEECBSSSSCCGGGC--------------CCBCCEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHH
T ss_pred ccCCCEEEEChhheeeecccCCCCcccc--------------ceeeecCCCcHHHHHHHHHHCCCceEEEEEeCCCHHHH
Confidence 4678999999999999987766654211 23456678989999999999999999999999999999
Q ss_pred HHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCC-ChhhhhhhhccHHHHHhhcCCcEE
Q 011562 159 FLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSK-EPAFSWMNKLSAEVKTAIKHSKVL 237 (483)
Q Consensus 159 ~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~~v 237 (483)
++++.|+++||+++++.+.++. +|+.+++.+++++++.+........ ..... .+.+. ...+.+++++
T Consensus 72 ~i~~~l~~~gv~~~~v~~~~~~--------~t~~~~~~~~~~g~~~~~~~~~~~a~~~~~~-~~~~~---~~~~~~~~~~ 139 (319)
T 3pl2_A 72 YLLAELERLGVDNQYVATDQTF--------KTPVTFCEIFPPDDFPLYFYREPKAPDLNIE-SADVS---LDDVREADIL 139 (319)
T ss_dssp HHHHHHHHTTEECTTEEEESSS--------CCCEEEECCBTTTBCCEEEECCSCCGGGGCC-GGGSC---HHHHHHCSEE
T ss_pred HHHHHHHHcCCccccEEecCCC--------CceEEEEEEcCCCCeeEEEecCCCcccccCC-hhhCC---HHHhccCCEE
Confidence 9999999999999999766554 3888888888777776543211100 00000 01111 2356789999
Q ss_pred EEecCCCCCCC-HHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHHH
Q 011562 238 FCNGYGFDELS-PALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPIT 316 (483)
Q Consensus 238 ~isG~~~~~~~-~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~ 316 (483)
|++|+.+...+ .+.+..+++.+++ +.++++|++++.. +|.......+.+.++++++|++++|++|++.++|..++.+
T Consensus 140 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~v~~D~~~~~~-~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~ 217 (319)
T 3pl2_A 140 WFTLTGFSEEPSRGTHREILTTRAN-RRHTIFDLDYRPM-FWESPEEATKQAEWALQHSTVAVGNKEECEIAVGETEPER 217 (319)
T ss_dssp EEEGGGGSSTTHHHHHHHHHHHHTT-CSCEEEECCCCGG-GSSCHHHHHHHHHHHHTTCSEEEECHHHHHHHHSCCSHHH
T ss_pred EEecccccCchhHHHHHHHHHHHHH-CCcEEEeCCCChh-hcCCHHHHHHHHHHHHHhCCEEEcCHHHHHHHcCCCCHHH
Confidence 99998764433 3556667766655 6778999998765 3444345567888999999999999999999999999999
Q ss_pred HHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 011562 317 AGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAAT 396 (483)
Q Consensus 317 ~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~ 396 (483)
+++.|++.|+ +.||||+|++|++++++++.+++|+++++++||+||||+|+|||+++|++|+++++|+++|+++|+++
T Consensus 218 ~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~aa~~ 295 (319)
T 3pl2_A 218 AGRALLERGV--ELAIVKQGPKGVMAMTKDETVEVPPFFVDVINGLGAGDAFGGALCHGLLSEWPLEKVLRFANTAGALV 295 (319)
T ss_dssp HHHHHHHTTC--SEEEEEEETTEEEEECSSCEEEECCCCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--CEEEEEECCCCeEEEECCceEEeCCcccCCCCCcCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 9999999876 78999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCHHHHHHHHHh
Q 011562 397 AMGCGAGRNVATLERVIELMRA 418 (483)
Q Consensus 397 v~~~G~~~~~p~~~ev~~~l~~ 418 (483)
+++.|+..++|+++||++++++
T Consensus 296 v~~~G~~~~~p~~~ev~~~l~~ 317 (319)
T 3pl2_A 296 ASRLECSTAMPTTDEVEASLNQ 317 (319)
T ss_dssp HTSSCSGGGCCCHHHHHHHCC-
T ss_pred HhccCCcCCCCCHHHHHHHHhc
Confidence 9999987789999999998754
No 3
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}
Probab=100.00 E-value=4.8e-46 Score=368.41 Aligned_cols=295 Identities=23% Similarity=0.330 Sum_probs=249.6
Q ss_pred CccEEEECCceeEEEecCCCCCCCChhh-hhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHH
Q 011562 81 SIDVATLGNLCVDIVLNVPQLPPPSRDA-RKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (483)
Q Consensus 81 ~~~VlviG~~~iD~~~~v~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~ 159 (483)
|++|+|+|++++|+++.++++|.+++.. +. ......+||++.|+|++|++||.++.++|.+|+|.+|++
T Consensus 2 m~~v~viG~~~~D~~~~~~~~p~~g~~~~~~----------~~~~~~~GG~~~NvA~~la~lG~~~~~~~~vG~D~~g~~ 71 (304)
T 3ry7_A 2 TNKVVILGSTNVDQFLTVERYAQPGETLHVE----------EAQKAFGGGKGANQAIATARMQADTTFITKIGTDGVADF 71 (304)
T ss_dssp CCEEEEECCCEEEEEEECSSCCCTTCCCCCS----------SCCEEEEECHHHHHHHHHHHTTCEEEEECEEESSCTTHH
T ss_pred CCcEEEEccceeEEEEeccCCCCCCCceecc----------cceeecCCCHHHHHHHHHHHCCCCeEEEEEeCCChHHHH
Confidence 5689999999999999999999877643 21 245667788899999999999999999999999999999
Q ss_pred HHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEE
Q 011562 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (483)
Q Consensus 160 i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~i 239 (483)
+++.|+++||+++++...++. +|+.++++++++|++.++...........+.+ +...+.+++++++++
T Consensus 72 i~~~l~~~gv~~~~v~~~~~~--------~T~~~~~~~~~~g~~~~~~~~ga~~~~~~~~~----~~~~~~~~~~~~v~~ 139 (304)
T 3ry7_A 72 ILEDFKVAHIDTSYIIKTAEA--------KTGQAFITVNAEGQNTIYVYGGANMTMTPEDV----INAKDAIINADFVVA 139 (304)
T ss_dssp HHHHHHHTTCBCTTCEEESSS--------CCEEEEEEECSSCCEEEEEECGGGGGCCHHHH----HTTHHHHHTCSEEEE
T ss_pred HHHHHHHcCCcchhEEEcCCC--------CCcEEEEEECCCCCEEEEEecCchhcCCHHHH----HHHHHHhccCCEEEE
Confidence 999999999999999765543 48999999998888876543322111111111 112245788999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC-----CH
Q 011562 240 NGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NP 314 (483)
Q Consensus 240 sG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~-----~~ 314 (483)
++ +.+.+.+.++++.++++|+++++||++... .+..+++++|++++|++|++.++|.. +.
T Consensus 140 ~~----~~~~~~~~~~~~~a~~~~~~v~~D~~~~~~-----------~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~ 204 (304)
T 3ry7_A 140 QL----EVPIPAIISAFEIAKAHGVTTVLNPAPAKA-----------LPNELLSLIDIIVPNETEAELLSGIKVTNEQSM 204 (304)
T ss_dssp ET----TSCHHHHHHHHHHHHHTTCEEEEECCSCCC-----------CCHHHHTTCSEECCBHHHHHHHHSCCCCSHHHH
T ss_pred cC----CCCHHHHHHHHHHHHHcCCEEEEeCCcccc-----------ccHHHHHhCCEEecCHHHHHHHhCCCCCChhHH
Confidence 84 567889999999999999999999976422 12468899999999999999999874 46
Q ss_pred HHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcC-CCHHHHHHHHHHHH
Q 011562 315 ITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHN-MPTVNTLTIANAVG 393 (483)
Q Consensus 315 ~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g-~~l~~al~~A~aaA 393 (483)
.+++++|++.|+ +.||||+|++|++++++++.+++|+++++++||+||||+|+|||+++|++| +++++|+++|+++|
T Consensus 205 ~~~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~vdttGAGDaf~a~~~~~l~~g~~~~~~a~~~A~~~a 282 (304)
T 3ry7_A 205 KDNANYFLSIGI--KTVLITLGKQGTYFATKNQSQHIEAYKVNAIDTTAAGDTFIGAFVSRLNKSQDNLADAIDFGNKAS 282 (304)
T ss_dssp HHHHHHHHHTTC--CEEEEECGGGCEEEECSSCEEEECCSSCCSSCCSSHHHHHHHHHHHHCCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CEEEEEeCCCceEEEECCeeEEecCCCcccCCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 778889998876 789999999999999988999999999999999999999999999999999 99999999999999
Q ss_pred HHHhcccCCCCCCCCHHHHHH
Q 011562 394 AATAMGCGAGRNVATLERVIE 414 (483)
Q Consensus 394 a~~v~~~G~~~~~p~~~ev~~ 414 (483)
+.++++.|+..++|+++|+++
T Consensus 283 a~~~~~~G~~~~~p~~~ev~~ 303 (304)
T 3ry7_A 283 SLTVQKHGAQASIPLLEEVNQ 303 (304)
T ss_dssp HTTSCCCCTGGGCCCHHHHHT
T ss_pred HHHhCCCCccccCCCHHHHhh
Confidence 999999999878999999975
No 4
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} SCOP: c.72.1.0 PDB: 3lki_A*
Probab=100.00 E-value=1.9e-46 Score=376.99 Aligned_cols=308 Identities=22% Similarity=0.290 Sum_probs=241.1
Q ss_pred CCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHH
Q 011562 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (483)
Q Consensus 80 ~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~ 159 (483)
++++|+|+|++++|++...+..|... ......+||++.|+|++|++||.++.++|.+|+|.+|++
T Consensus 3 ~~~~v~viG~~~iD~~~~~~~~~~~~---------------~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~g~~ 67 (338)
T 3ljs_A 3 LKKTILCFGEALIDMLAQPLVKKGMP---------------RAFLQCAGGAPANVAVAVARLGGAVQFVGMLGSDMFGDF 67 (338)
T ss_dssp -CCEEEEESCCEEEEEECCCSSTTSC---------------CCEEEEEECHHHHHHHHHHHHTCCEEEESEEESSHHHHH
T ss_pred CCCCEEEEChhhhheeccCCCCccch---------------hceeecCCChHHHHHHHHHhCCCCEEEEeeccCCHHHHH
Confidence 46789999999999999887765431 234556789999999999999999999999999999999
Q ss_pred HHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCccccccc--CCCCChhhhhhhhccHHHHHhhcCCcEE
Q 011562 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRA--DFSKEPAFSWMNKLSAEVKTAIKHSKVL 237 (483)
Q Consensus 160 i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~l~~~~~v 237 (483)
+++.|+++||+++++.+.++. +|+.+++.++++|++.+.... ........ +.+.. ..+++++++
T Consensus 68 l~~~l~~~gV~~~~v~~~~~~--------~T~~~~v~~~~~g~r~~~~~~~~~a~~~l~~---~~~~~---~~~~~~~~~ 133 (338)
T 3ljs_A 68 LFDSFAEAGVVTDGIVRTSTA--------KTALAFVALDAHGERSFSFYRPPAADLLFRV---EHFQD---ASFSDALIF 133 (338)
T ss_dssp HHHHHHHHTCBCTTCEEESSS--------CCCEEEEECCSTTCCEEEEECSSCGGGGCCG---GGCCH---HHHHTEEEE
T ss_pred HHHHHHHcCCCceeEEEcCCC--------CceEEEEEECCCCCeEEEEeCCCChhHhCCH---hhcCH---hHhcCCCEE
Confidence 999999999999999775544 388999999988888754321 11101111 11222 346789999
Q ss_pred EEecCCC-CCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHHH
Q 011562 238 FCNGYGF-DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPIT 316 (483)
Q Consensus 238 ~isG~~~-~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~ 316 (483)
|++++.+ .+.+.+.+.++++.++++|+++++||+.+.. +|.......+.+.++++++|++++|++|++.|+|..+..+
T Consensus 134 ~~~~~~l~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~-~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~ 212 (338)
T 3ljs_A 134 HACSNSMTDADIAEVTFEGMRRAQAAGAIVSFDLNFRPM-LWPNGENPASRLWKGLSLADVVKLSSEELDYLANTLAADA 212 (338)
T ss_dssp EEEGGGGSSHHHHHHHHHHHHHHHHTTCEEEEECCCCGG-GSCTTCCTHHHHHHHHHTCSEEEEEHHHHHHHHHHHTSCH
T ss_pred EECChHhcCchHHHHHHHHHHHHHHcCCEEEEECCCChh-hcCCHHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCChhH
Confidence 9998754 3445678899999999999999999998765 3333334467788999999999999999999998655444
Q ss_pred --HHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcC--------------C
Q 011562 317 --AGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHN--------------M 380 (483)
Q Consensus 317 --~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g--------------~ 380 (483)
+++.|++.|+ +.||||+|++|++++++++.+++|+++++++|||||||+|+|||+++|++| +
T Consensus 213 ~~~~~~l~~~g~--~~vvvT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~a~~~~~l~~g~~~~~~~~~~~~~~~ 290 (338)
T 3ljs_A 213 NAVIQQLWQGRA--QLLLVTDAAGPVHWYTRTAGGEVPTFRVQVQDSNAAGDAFVGGMLYTFAQQFDDAAALIDFCHDPE 290 (338)
T ss_dssp HHHHHHHTTTTC--CEEEEEETTEEEEEEESSCEEEECC-----------CHHHHHHHHHHHHHHCSSTHHHHHHHTCHH
T ss_pred HHHHHHHHhcCC--CEEEEeeCCCceEEEECCceEEeCCCCCccCCCCCccHHHHHHHHHHHHhCCCcccchhccccChH
Confidence 8888888766 889999999999999999999999999999999999999999999999999 8
Q ss_pred CHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhc
Q 011562 381 PTVNTLTIANAVGAATAMGCGAGRNVATLERVIELMRAS 419 (483)
Q Consensus 381 ~l~~al~~A~aaAa~~v~~~G~~~~~p~~~ev~~~l~~~ 419 (483)
++++|+++|+++|++++++.|+..++|+++||+++++++
T Consensus 291 ~l~~al~~A~~~aa~~v~~~Ga~~~~p~~~ev~~~~~~~ 329 (338)
T 3ljs_A 291 SIVSTLRFAAAVGALAVTRQGAFTAMPMLSEVLSLIQEQ 329 (338)
T ss_dssp HHHHHHHHHHHHHGGGC----CCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHhhh
Confidence 999999999999999999999988899999999999865
No 5
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*
Probab=100.00 E-value=4.4e-45 Score=362.43 Aligned_cols=300 Identities=23% Similarity=0.327 Sum_probs=249.4
Q ss_pred CCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHH
Q 011562 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (483)
Q Consensus 80 ~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~ 159 (483)
++++|+|+|++++|++..++++|.+++..+. ......+||++.|+|+++++||.++.++|.+|+|.+|++
T Consensus 3 ~~~~v~viG~~~iD~~~~~~~~p~~g~~~~~----------~~~~~~~GG~~~N~A~~la~lG~~~~~~~~vG~D~~g~~ 72 (309)
T 1rkd_A 3 NAGSLVVLGSINADHILNLQSFPTPGETVTG----------NHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGES 72 (309)
T ss_dssp -CCEEEEECCCEEEEEEECSSCCCTTCCCCC----------CCEEEEEECHHHHHHHHHHHHTCEEEEEEEEESSTTHHH
T ss_pred CCCeEEEECcceEeEEEecCCCCCCCCeeec----------CceeecCCCHHHHHHHHHHhCCCceEEEEEECCCHHHHH
Confidence 3568999999999999999999887764321 134556788899999999999999999999999999999
Q ss_pred HHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEE
Q 011562 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (483)
Q Consensus 160 i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~i 239 (483)
+++.|+++||+++++...++. +|+.++++++++|++.+............+.++ ...+.+..++++|+
T Consensus 73 i~~~L~~~gv~~~~v~~~~~~--------~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~v~~ 140 (309)
T 1rkd_A 73 VRQQLATDNIDITPVSVIKGE--------STGVALIFVNGEGENVIGIHAGANAALSPALVE----AQRERIANASALLM 140 (309)
T ss_dssp HHHHHHTTTEECTTEEEETTC--------CCEEEEEEECTTSCEEEEEECGGGGGCCHHHHH----TTHHHHHHCSEEEE
T ss_pred HHHHHHHcCCCccceEecCCC--------CCceEEEEECCCCCeEEEEeCCchhcCCHHHHH----HHHHhcccCCEEEE
Confidence 999999999999999765543 489999999988888765432221111111111 11234678999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC-----CH
Q 011562 240 NGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NP 314 (483)
Q Consensus 240 sG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~-----~~ 314 (483)
++ ..+.+.+..+++.++++|+++++||+++.. + ...+++++|++++|++|++.|+|.. +.
T Consensus 141 ~~----~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-~----------~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~ 205 (309)
T 1rkd_A 141 QL----ESPLESVMAAAKIAHQNKTIVALNPAPARE-L----------PDELLALVDIITPNETEAEKLTGIRVENDEDA 205 (309)
T ss_dssp CS----SSCHHHHHHHHHHHHHTTCEEEECCCSCCC-C----------CHHHHTTCSEECCCHHHHHHHHSCCCSSHHHH
T ss_pred eC----CCCHHHHHHHHHHHHHcCCEEEEECCcccc-c----------hHHHHhhCCEEEcCHHHHHHHhCCCCCCHHHH
Confidence 84 456788889999999999999999987532 1 1367899999999999999999873 46
Q ss_pred HHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011562 315 ITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGA 394 (483)
Q Consensus 315 ~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa 394 (483)
.++++.|++.|+ +.||||+|++|++++++++.+++|+++++++||+||||+|+|||+++|++|+++++|+++|+++|+
T Consensus 206 ~~~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~~a~~~aa 283 (309)
T 1rkd_A 206 AKAAQVLHEKGI--RTVLITLGSRGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAA 283 (309)
T ss_dssp HHHHHHHHHTTC--SEEEEECGGGCEEEEETTEEEEECCCCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CEEEEEECCCcEEEEeCCceEEcCCCCCCcCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 677888988876 789999999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCCCCHHHHHHHHHh
Q 011562 395 ATAMGCGAGRNVATLERVIELMRA 418 (483)
Q Consensus 395 ~~v~~~G~~~~~p~~~ev~~~l~~ 418 (483)
.++++.|+...+|+++|+++++++
T Consensus 284 ~~~~~~G~~~~~p~~~ev~~~~~~ 307 (309)
T 1rkd_A 284 IAVTRKGAQPSVPWREEIDAFLDR 307 (309)
T ss_dssp HHHTSSSSGGGCCCHHHHHHHHHT
T ss_pred HHcCCCCccCCCCCHHHHHHHHhc
Confidence 999999987779999999998864
No 6
>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis}
Probab=100.00 E-value=7.8e-45 Score=366.41 Aligned_cols=317 Identities=14% Similarity=0.149 Sum_probs=250.7
Q ss_pred CccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHH
Q 011562 81 SIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (483)
Q Consensus 81 ~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i 160 (483)
|++|+|+|++++|++.. .++...+ .......+||++.|+|++|++||.++.++|.+|+|.+|+++
T Consensus 2 ~~~v~viG~~~~D~~~~-----~~~~~~~----------~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i 66 (346)
T 3ktn_A 2 SLKIAAFGEVMLRFTPP-----EYLMLEQ----------TEQLRMNFVGTGVNLLANLAHFQLETALITKLPANRLGEAG 66 (346)
T ss_dssp CCEEEEECCCEEEEECS-----TTCCTTT----------CSCCEEEEECHHHHHHHHHHHTTCEEEEEEEECSSHHHHHH
T ss_pred CCcEEEeChhhhhhcCC-----CCCcccc----------cceeEEeccCHHHHHHHHHHHcCCCeEEEEecCCCHHHHHH
Confidence 56899999999999842 1122111 12456677899999999999999999999999999999999
Q ss_pred HHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccc---cC-CCCChhhhhhhhccHHHHHhhcCCcE
Q 011562 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSR---AD-FSKEPAFSWMNKLSAEVKTAIKHSKV 236 (483)
Q Consensus 161 ~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~---~~-~~~~~~~~~~~~l~~~~~~~l~~~~~ 236 (483)
++.|++.||+++++...+ . +|+.+++.++.+++++++.. .. .......+. +. +...+.++++
T Consensus 67 ~~~l~~~gv~~~~v~~~~-~--------~t~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~---~~--~~~~~~~~~~ 132 (346)
T 3ktn_A 67 KAALRKLGISDQWVGEKG-D--------HIGSFFAEMGYGIRPTQVTYQNRHQSAFGISEAKD---YD--FEAFLAEVDM 132 (346)
T ss_dssp HHHHHHTTCBCTTEEECC-S--------CCEEEEEECCBTTBCCEEEECCCTTSTTTTCCGGG---SC--HHHHHTTCSE
T ss_pred HHHHHHcCCcceEEEeCC-C--------ceEEEEEEecCCCCCceEEecCCCCChhhhCChhh---cC--hHHHhCCCCE
Confidence 999999999999997642 2 48888888776666554332 11 111111111 11 2346789999
Q ss_pred EEEecCCCC--CCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCC--hHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC
Q 011562 237 LFCNGYGFD--ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGT--PEEQRALSYFLSTSDVLLLTSDEAESLTGLR 312 (483)
Q Consensus 237 v~isG~~~~--~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~--~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~ 312 (483)
+|++|+.+. +...+.+.++++.++++|+++++||+++... |... ....+.+.++++++|++++|++|+..|+|..
T Consensus 133 v~~~g~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~r~~~-~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~ 211 (346)
T 3ktn_A 133 VHICGISLSLTEKTRDAALILAQKAHAYQKKVCFDFNYRPSL-NTANSALFMRQQYERILPYCDIVFGSRRDLVELLGFI 211 (346)
T ss_dssp EEECTHHHHHCHHHHHHHHHHHHHHHHTTCEEEEECCCCGGG-CCHHHHHHHHHHHHHHGGGCSEEECCHHHHHHTSCCC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHHHcCCEEEEeCCCChHH-cCCccHHHHHHHHHHHHHhCCEEEccHHHHHHHhCCC
Confidence 999988652 2233788899999999999999999877653 3221 3456778899999999999999999999876
Q ss_pred ---------CHHHHHHHHHHc-CCCccEEEEEeCCCc-------EEEEECCeeEEecCccccccCCCCchHHHHHHHHHH
Q 011562 313 ---------NPITAGQELLRK-GLRTKWVVVKMGPRG-------SILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFG 375 (483)
Q Consensus 313 ---------~~~~~~~~l~~~-g~~~~~vVvT~G~~G-------~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~g 375 (483)
+..++++.|++. |+ +.||||+|++| ++++++++.+++|+++++++||+||||+|+|||+++
T Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~g~--~~vvvT~G~~G~~~~~~g~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~~~~ 289 (346)
T 3ktn_A 212 PREDLEGEAQETELIQRFMSQYNL--EWFAGTTRSHSQNQNYLSGYLYTQNEYQQSEKRPLLNLDRIGAGDAYAAGILYG 289 (346)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHTC--SEEEEEEEEECSSCEEEEEEEECSSCEEECCCEECCCSCCTTHHHHHHHHHHHH
T ss_pred CCccccchHHHHHHHHHHHHhcCC--CEEEEecCccccccCcceEEEEECCceEEeCCCccccCCCCchhHHHHHHHHHH
Confidence 356778888875 66 78999999998 999988889999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhcCCCc--chhhHHH
Q 011562 376 FIHNMPTVNTLTIANAVGAATAMGCGAGRNVATLERVIELMRASNLNE--DNAFWNE 430 (483)
Q Consensus 376 l~~g~~l~~al~~A~aaAa~~v~~~G~~~~~p~~~ev~~~l~~~~~~~--~~~~~~~ 430 (483)
|++|+++++|+++|+++|++++++.|+.. +|+++||++++++.+... +...|.+
T Consensus 290 l~~g~~l~~a~~~A~a~aa~~v~~~G~~~-~p~~~ev~~~l~~~~~~~~~~~~~~~~ 345 (346)
T 3ktn_A 290 YSQNWSLEKAVTFATVNGVLAHTIQGDIP-LTTVKQVNHVLEHPNIDLIREGHHHHH 345 (346)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHTTSSSSCC-CCCHHHHHHHHHCTTCCCCCCCC----
T ss_pred HHcCCCHHHHHHHHHHHHHHHhccCCCCC-CCCHHHHHHHHhcCCceEeeccccccC
Confidence 99999999999999999999999999876 999999999999877553 3566653
No 7
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP}
Probab=100.00 E-value=9e-45 Score=364.56 Aligned_cols=304 Identities=22% Similarity=0.267 Sum_probs=237.9
Q ss_pred CCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHH
Q 011562 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (483)
Q Consensus 80 ~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~ 159 (483)
++++|+|+|++++|++...+ +...+. ......+||++.|+|++|++||.++.++|.+|+|.+|++
T Consensus 25 ~~~~vlviG~~~iD~~~~~~-----g~~~~~----------~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~G~~ 89 (336)
T 4du5_A 25 SALDVITFGEAMMLLVADRP-----GPLEHA----------EAFHKRTAGAETNVAIGLARLGLKVGWASRLGTDSMGRY 89 (336)
T ss_dssp -CEEEEEECCCEEEEEESSS-----SCGGGC----------CEEEEEEECHHHHHHHHHHHTTCCEEEEEEECSSHHHHH
T ss_pred CCCCEEEEChhhhhccCCCC-----Cccchh----------hheeecCCCHHHHHHHHHHhCCCcEEEEEEeCCCHHHHH
Confidence 45799999999999997642 222211 134556788899999999999999999999999999999
Q ss_pred HHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccc-c-ccC-CCCChhhhhhhhccHHHHHhhcCCcE
Q 011562 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFC-S-RAD-FSKEPAFSWMNKLSAEVKTAIKHSKV 236 (483)
Q Consensus 160 i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~-~-~~~-~~~~~~~~~~~~l~~~~~~~l~~~~~ 236 (483)
+++.|++.||+++++.+.++.+ |+.+++.++++|++..+ . +.. ....... +.+.. ..++.+++
T Consensus 90 i~~~L~~~GV~~~~v~~~~~~~--------T~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~---~~~~~---~~l~~~~~ 155 (336)
T 4du5_A 90 LLAAMAAEGIDCSHVVCDATQK--------TGFQFKGKVTDGSDPPVEYHRKGSAASHMGV---ADIDE---AWLLSARH 155 (336)
T ss_dssp HHHHHHTTTCEEEEEEECTTSC--------CCEEEECCCSCC--CCEEEECTTCTGGGCCG---GGCCH---HHHTTEEE
T ss_pred HHHHHHHcCCCcceEEEcCCCC--------cEEEEEEEcCCCCcceEEEECCCChhHhCCh---hhCCH---hHhccCCE
Confidence 9999999999999998766543 88888888888844322 1 111 1111111 11221 35678999
Q ss_pred EEEecCCC--CCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCH
Q 011562 237 LFCNGYGF--DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNP 314 (483)
Q Consensus 237 v~isG~~~--~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~ 314 (483)
+|++|+.+ .+...+.+.++++.++++|+++++||+.++.. |.......+.+.++++++|++++|++|++.|+|..++
T Consensus 156 v~~~g~~~~~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~-~~~~~~~~~~~~~ll~~~dil~pN~~Ea~~l~g~~~~ 234 (336)
T 4du5_A 156 LHATGVFPAISATTLPAARKTMDLMRAAGRSVSFDPNLRPTL-WATPELMRDAINDLATRADWVLPGMEEGRFLTGETTP 234 (336)
T ss_dssp EEEESSGGGSCTTHHHHHHHHHHHHHHTTCEEEEECCCCGGG-SSSHHHHHHHHHHHHTTCSEECCBHHHHHHHHCCCSH
T ss_pred EEEcCchhhCChHHHHHHHHHHHHHHHCCCEEEEeCcCCchh-cCChHHHHHHHHHHHHhCCEEECCHHHHHHHhCCCCH
Confidence 99999865 44455788899999999999999999977653 3333344677889999999999999999999999999
Q ss_pred HHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCcccc-ccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011562 315 ITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVN-VTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVG 393 (483)
Q Consensus 315 ~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~-vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaA 393 (483)
.++++.|++.|+ +.||||+|++|++++++++.+++|+++++ ++||+||||+|+|||+++|++|+++++|+++|+++|
T Consensus 235 ~~~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~vvdttGAGDaf~a~~~~~l~~g~~l~~a~~~A~~~a 312 (336)
T 4du5_A 235 EGVARFYRQLGA--KLVVVKLGAEGAYFDGEAGSGRVAGFPVAEVVDTVGAGDGFAVGVISALLDGLGVPEAVKRGAWIG 312 (336)
T ss_dssp HHHHHHHHHTTC--SEEEEECGGGCEEEEETTEEEEECCCCC-------CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CEEEEEecCCceEEEECCeEEEeCCccCCCCCCCccchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999876 88999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCCCCCHHHHHHH
Q 011562 394 AATAMGCGAGRNVATLERVIEL 415 (483)
Q Consensus 394 a~~v~~~G~~~~~p~~~ev~~~ 415 (483)
++++++.|+..++|+++||+++
T Consensus 313 a~~v~~~G~~~~~p~~~ev~~~ 334 (336)
T 4du5_A 313 ARAVQVLGDSEGLPTRAELNAA 334 (336)
T ss_dssp HHHHC------CCCCHHHHHCC
T ss_pred HHHhccCCCccCCCCHHHHHhc
Confidence 9999999988889999999863
No 8
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=5.4e-45 Score=367.08 Aligned_cols=304 Identities=18% Similarity=0.233 Sum_probs=252.6
Q ss_pred CCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHH
Q 011562 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (483)
Q Consensus 80 ~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~ 159 (483)
++++|+|+|++++|+++.++++|..++..+. ......+||++.|+|++|++||.++.++|.+|+|.+|++
T Consensus 28 ~~~~i~viG~~~iD~~~~~~~~p~~~~~~~~----------~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~ 97 (343)
T 2rbc_A 28 GGKHVLCVGAAVLDTLFRVADMPKGEGKVLP----------YEVLQIAEGMASSAAYAVHRMGGRASLWGAVGDDETGTR 97 (343)
T ss_dssp CCCEEEEESCCEEEEEEECSSCCCSSSCCCC----------SEEEEEEECHHHHHHHHHHHTTCEEEEECEEESSHHHHH
T ss_pred cCCeEEEECcceEEEEeecCCCCCCCCeEee----------eeeEEcCCcHHHHHHHHHHHcCCceEEEEEeCCCHHHHH
Confidence 4578999999999999999998876653321 133456788899999999999999999999999999999
Q ss_pred HHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEE
Q 011562 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (483)
Q Consensus 160 i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~i 239 (483)
+++.|+++||+++++.+.++. +|+.++++++++|++.++........... +.+. ...+..+++||+
T Consensus 98 i~~~L~~~GVd~~~v~~~~~~--------~T~~~~v~~~~~g~r~~~~~~~~~~~~~~---~~l~---~~~l~~~~~v~~ 163 (343)
T 2rbc_A 98 ILRDLSESGIDTSGMTVAPGA--------RSALSTIIIDNRGERLIVPFYDHRLHEKK---RACT---PEDIALFDAVLV 163 (343)
T ss_dssp HHHHHHHTTEECTTCEEETTC--------CCEEEEEEECTTSCEEEEEECCGGGGSSC---CCCC---HHHHTTCSEEEE
T ss_pred HHHHHHHcCCceeeEEEcCCC--------CCceEEEEECCCCCEEEEEcCCCcccCCh---hHhc---HhhhCCCCEEEE
Confidence 999999999999998765543 48899999998888877543322111111 1121 234678999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHh-hhcCCCEEEcCHHHHHHhhCCCCHHHHH
Q 011562 240 NGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSY-FLSTSDVLLLTSDEAESLTGLRNPITAG 318 (483)
Q Consensus 240 sG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~-ll~~~dil~~N~~Ea~~l~g~~~~~~~~ 318 (483)
+++. ++.+.++++.+++.++++++||... .+.+.+ +++++|++++|++|++.|+|..++.+++
T Consensus 164 ~~~~-----~~~~~~~~~~a~~~g~~v~~Dp~~~-----------~~~~~~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~ 227 (343)
T 2rbc_A 164 DVRW-----PELALDVLTVARALGKPAILDGDVA-----------PVETLEGLAPAATHIVFSEPAATRLTGLETVKDML 227 (343)
T ss_dssp CSSS-----HHHHHHHHHHHHHTTCCEEEEECSC-----------CHHHHHHHGGGCSEEEEEHHHHHHHHCCSSHHHHH
T ss_pred cCCC-----HHHHHHHHHHHHHCCCEEEEECCcc-----------ccccHHHHHhcCCEEEeCHHHHHHHcCCCCHHHHH
Confidence 9653 4678899999999999999999632 234566 8999999999999999999998999999
Q ss_pred HHHHHcCCCccEEEEEeCCCcEEEEECC--eeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 011562 319 QELLRKGLRTKWVVVKMGPRGSILVTKS--SISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAAT 396 (483)
Q Consensus 319 ~~l~~~g~~~~~vVvT~G~~G~~~~~~~--~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~ 396 (483)
+.|++.|+ .+.||||+|++|+++++++ +.+++|+++++++||+||||+|+|||+++|++|+++++|+++|+++|+.+
T Consensus 228 ~~l~~~g~-~~~VvvT~G~~G~~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~ag~~~~l~~g~~~~~a~~~A~~~aa~~ 306 (343)
T 2rbc_A 228 PVLHARYP-QTFIAVTAGPAGCWWTEADDPTVHFQTTMQVEAVDTLAAGDIFHGTFALAMAEGMQSRAAVRLSSVAAALK 306 (343)
T ss_dssp HHHHHHST-TSEEEEECGGGCEEEECTTCCCEEEECCCCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC-CceEEEEECCcceEEEeCCCceeEEecCCCCccccCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99998864 1579999999999999887 78899999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCHHHHHHHHHhcCCCcc
Q 011562 397 AMGCGAGRNVATLERVIELMRASNLNED 424 (483)
Q Consensus 397 v~~~G~~~~~p~~~ev~~~l~~~~~~~~ 424 (483)
+++.|+..++|+++|+++++++...++.
T Consensus 307 v~~~G~~~~~p~~~ev~~~l~~~~~~~~ 334 (343)
T 2rbc_A 307 CTVFGGRIGAPTREETEEAMRQWLERES 334 (343)
T ss_dssp HTSSSGGGGCCCHHHHHHHHHHHHTCC-
T ss_pred hCCCCCccCCCCHHHHHHHHHhccccCC
Confidence 9999987678999999999987544433
No 9
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A*
Probab=100.00 E-value=1.5e-44 Score=361.35 Aligned_cols=304 Identities=22% Similarity=0.260 Sum_probs=244.9
Q ss_pred CCCccEEEECCceeEEEecC--------CCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEE
Q 011562 79 VKSIDVATLGNLCVDIVLNV--------PQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGH 150 (483)
Q Consensus 79 ~~~~~VlviG~~~iD~~~~v--------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~ 150 (483)
|++++|+|+|++++|++... +.+|. ......+||+++|+|++|++||.++.++|.
T Consensus 3 m~~~~v~~iG~~~~D~~~~~~~~~~~~~~~~p~-----------------~~~~~~~GG~~~NvA~~la~LG~~~~~ig~ 65 (325)
T 3h49_A 3 LDNLDVICIGAAIVDIPLQPVSKNIFDVDSYPL-----------------ERIAMTTGGDAINEATIISRLGHRTALMSR 65 (325)
T ss_dssp --CEEEEEESCCEEEEEECSCCGGGGGSSCCCC-----------------SCCCCEEESHHHHHHHHHHHTTCEEEEECE
T ss_pred CCCCeEEEEChhhheeeccCCCCccccccccch-----------------heeEEccCcHHHHHHHHHHHCCCCeEEEEE
Confidence 46789999999999997542 22221 134556788899999999999999999999
Q ss_pred ecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhh-hhhccHHHHH
Q 011562 151 VGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSW-MNKLSAEVKT 229 (483)
Q Consensus 151 vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 229 (483)
+|+|.+|+++++.|++.||+++++...++. +|+.++++++++|++.++...+.. .... .+.+. ..
T Consensus 66 vG~D~~G~~i~~~L~~~gV~~~~v~~~~~~--------~T~~~~~~~~~~g~r~~~~~~~~~---~~~~~~~~~~---~~ 131 (325)
T 3h49_A 66 IGKDAAGQFILDHCRKENIDIQSLKQDVSI--------DTSINVGLVTEDGERTFVTNRNGS---LWKLNIDDVD---FA 131 (325)
T ss_dssp EESSHHHHHHHHHHHHHTCBCSSCEEETTS--------CCCEEEEEECTTSCEEEECCTTSH---HHHCCGGGCC---GG
T ss_pred ECCChHHHHHHHHHHHcCCceeeEEecCCC--------CCceEEEEECCCCceeEEeccCcc---cccCChhhcC---hh
Confidence 999999999999999999999998775543 488899999999998875432211 0000 01111 23
Q ss_pred hhcCCcEEEEecCCCCC-CCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHh
Q 011562 230 AIKHSKVLFCNGYGFDE-LSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESL 308 (483)
Q Consensus 230 ~l~~~~~v~isG~~~~~-~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l 308 (483)
.+..++++|++|+.... .+.+.+.++++.+++++ .+++|++.++.. |. ..+.+.++++++|++++|++|++.|
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~-~~~~d~~~~~~~-~~----~~~~~~~~l~~~dil~~N~~E~~~l 205 (325)
T 3h49_A 132 RFSQAKLLSLASIFNSPLLDGKALTEIFTQAKARQ-MIICADMIKPRL-NE----TLDDICEALSYVDYLFPNFAEAKLL 205 (325)
T ss_dssp GGGGCSEEEEEEETTSTTSCHHHHHHHHHHHHHTT-CEEEEEECCCSS-CC----CHHHHHHHHTTCSEEECBHHHHHHH
T ss_pred hhccCCEEEEecccCCcccCHHHHHHHHHHHHhcC-CEEEecCCchhh-hh----HHHHHHHHHhhCCEEecCHHHHHHH
Confidence 56789999999976533 45678899999999998 566776555432 22 2445678899999999999999999
Q ss_pred hCCCCHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccc-cccCCCCchHHHHHHHHHHHHcCCCHHHHHH
Q 011562 309 TGLRNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKV-NVTDTVGCGDSFVAAVAFGFIHNMPTVNTLT 387 (483)
Q Consensus 309 ~g~~~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v-~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~ 387 (483)
+|..+..++++.|++.|+ +.||||+|++|++++++++.+++|++++ +++|||||||+|+|||+++|++|+++++|++
T Consensus 206 ~g~~~~~~~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~ag~~~~l~~g~~~~~a~~ 283 (325)
T 3h49_A 206 TGKETLDEIADCFLACGV--KTVVIKTGKDGCFIKRGDMTMKVPAVAGITAIDTIGAGDNFASGFIAALLEGKNLRECAR 283 (325)
T ss_dssp HTCSSHHHHHHHHHTTTC--SEEEEECTTSCEEEEETTEEEEECCCSSCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hCCCCHHHHHHHHHHcCC--CEEEEEeCCCCeEEEECCeEEEecCcCCCCCcCCCChhHHHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999998876 7899999999999999999999999986 8999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCCCCCCHHHHHHHHHhcCC
Q 011562 388 IANAVGAATAMGCGAGRNVATLERVIELMRASNL 421 (483)
Q Consensus 388 ~A~aaAa~~v~~~G~~~~~p~~~ev~~~l~~~~~ 421 (483)
+|+++|++++++.|+..++|+++|++++++++.-
T Consensus 284 ~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~~~~ 317 (325)
T 3h49_A 284 FANATAAISVLSVGATTGVKNRKLVEQLLEEYEG 317 (325)
T ss_dssp HHHHHHHHHHTSSSSSSSCSSSHHHHTC------
T ss_pred HHHHHHHHHHcccCCCCCCCCHHHHHHHHHhccC
Confidence 9999999999999998889999999999987653
No 10
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens}
Probab=100.00 E-value=4.2e-45 Score=365.77 Aligned_cols=304 Identities=18% Similarity=0.211 Sum_probs=252.4
Q ss_pred CCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHH
Q 011562 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (483)
Q Consensus 80 ~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~ 159 (483)
++++|+|+|++++|++..++..|.+++..+. .....+||++.|+|++|++||.++.++|.+|+|.+|++
T Consensus 5 ~~~~v~viG~~~vD~~~~~~~~~~~g~~~~~-----------~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~D~~g~~ 73 (328)
T 3kzh_A 5 KEPYLLVFGASVVDVFGFSKASYRPYNSTPG-----------HVKISFGGVCRNIAENMARVGVNTNFMSILGNDEHGKS 73 (328)
T ss_dssp CCCCEEEECCCEEEEEEEESSCCCTTSEEEE-----------EEEEEEECHHHHHHHHHHHTTCCEEEECEECSSHHHHH
T ss_pred CCCcEEEECcEEeeeeeccCCCCCCCCCceE-----------EEEEccCcHHHHHHHHHHHcCCCcEEEEEecCcHHHHH
Confidence 4678999999999999999998887764321 23556788899999999999999999999999999999
Q ss_pred HHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCccccc-ccCCCCChhhhhhhhccHHHHHhhcCCcEEE
Q 011562 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCS-RADFSKEPAFSWMNKLSAEVKTAIKHSKVLF 238 (483)
Q Consensus 160 i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~ 238 (483)
+++.|++.||+++++...++. +|+.++++++++|++.+.. ..........+++ +...+.+..+++++
T Consensus 74 i~~~L~~~gv~~~~v~~~~~~--------~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 141 (328)
T 3kzh_A 74 IVEHSKKIGYHMDDSMVIEGG--------STPTYLAILDENGEMVSAIADMKSIGAMNTDFI----DSKREIFENAEYTV 141 (328)
T ss_dssp HHHHHHHHTEECTTCEECTTC--------CCCEEEEEECTTSCEEEEEEECGGGGGCCHHHH----HHTHHHHHTCSEEE
T ss_pred HHHHHHHcCCCccceEEeCCC--------CCeeEEEEEcCCCCEEEEEEchhhhhhCCHHHH----HHHHHhhccCCEEE
Confidence 999999999999988765543 3889999999988887532 1111111111111 22235678999999
Q ss_pred EecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC-----C
Q 011562 239 CNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----N 313 (483)
Q Consensus 239 isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~-----~ 313 (483)
+++. .+ +.+..+++ +++.++++++||++. ...+.+.++++++|++++|++|++.++|.. +
T Consensus 142 ~~~~----~~-~~~~~l~~-a~~~~~~v~~D~~~~---------~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~~ 206 (328)
T 3kzh_A 142 LDSD----NP-EIMEYLLK-NFKDKTNFILDPVSA---------EKASWVKHLIKDFHTIKPNRHEAEILAGFPITDTDD 206 (328)
T ss_dssp EESS----CH-HHHHHHHH-HHTTTSEEEEECCSH---------HHHHTSTTTGGGCSEECCBHHHHHHHHTSCCCSHHH
T ss_pred EeCC----cH-HHHHHHHH-HhhcCCcEEEEeCCH---------HHHHHHHHHhcCCcEEeCCHHHHHHHHCCCCCCHHH
Confidence 9964 33 67777777 888999999999642 223445678899999999999999999853 5
Q ss_pred HHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011562 314 PITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVG 393 (483)
Q Consensus 314 ~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaA 393 (483)
+.++++.|++.|+ +.||||+|++|++++++++.+++|+++++++|||||||+|+|||+++|++|+++++|+++|+++|
T Consensus 207 ~~~~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaf~ag~~~~l~~g~~~~~a~~~A~a~a 284 (328)
T 3kzh_A 207 LIKASNYFLGLGI--KKVFISLDADGIFYNDGVSCGKIKATEVDVKNVTGAGDSFVAGLGYGYMNKMPIEDIVKFAMTMS 284 (328)
T ss_dssp HHHHHHHHHHHTC--CEEEEECGGGCEEEECSSCEEEEEESSCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CEEEEEeCCCCEEEEeCCceEEecCCCcccCCCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6778888998876 78999999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCCCCCHHHHHHHHHhcCCCc
Q 011562 394 AATAMGCGAGRNVATLERVIELMRASNLNE 423 (483)
Q Consensus 394 a~~v~~~G~~~~~p~~~ev~~~l~~~~~~~ 423 (483)
++++++.|+..+.|++++++++++++...+
T Consensus 285 a~~v~~~G~~~~~~~~~~v~~~~~~~~~~~ 314 (328)
T 3kzh_A 285 NITISHEETIHPDMALDTVLAKLEKTTWEE 314 (328)
T ss_dssp HHHHTSSSSSCTTCSHHHHHHHHHTCCEEE
T ss_pred HHHhcCCCCCCCcCCHHHHHHHhhhcchhh
Confidence 999999999888999999999999876543
No 11
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A*
Probab=100.00 E-value=5.3e-45 Score=362.09 Aligned_cols=287 Identities=22% Similarity=0.310 Sum_probs=244.0
Q ss_pred CCCCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhh
Q 011562 78 GVKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYG 157 (483)
Q Consensus 78 ~~~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g 157 (483)
.++|++|+|+|++++|+++.++++|.+++..+. ......+||++.|+|++|++||.++.++|.+|+|.+|
T Consensus 16 ~~mm~~i~viG~~~iD~~~~v~~~p~~g~~~~~----------~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g 85 (310)
T 3go6_A 16 GPMAPRVCVVGSVNMDLTFVVDALPRPGETVLA----------ASLTRTPGGKGANQAVAAARAGAQVQFSGAFGDDPAA 85 (310)
T ss_dssp ---CCEEEEECCCEEEEEEECSSCCCTTCCCCC----------SEEEEEEECHHHHHHHHHHHTTCEEEEECEECSSHHH
T ss_pred ccccCCEEEECCceEEEEEecCCCCCCCCeEEe----------cceeecCCCHHHHHHHHHHHCCCCeEEEEEECCCHHH
Confidence 346789999999999999999999887754321 1345567888999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEE
Q 011562 158 RFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVL 237 (483)
Q Consensus 158 ~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v 237 (483)
+++++.|+++||+++++...+. +|+.++++++++|++.++....... .+. ++.+.+++++++
T Consensus 86 ~~i~~~L~~~gV~~~~v~~~~~---------~T~~~~~~~~~~g~~~~~~~~ga~~-----~l~----~~~~~l~~~~~v 147 (310)
T 3go6_A 86 AQLRAHLRANAVGLDRTVTVPG---------PSGTAIIVVDASAENTVLVAPGANA-----HLT----PVPSAVANCDVL 147 (310)
T ss_dssp HHHHHHHHHTTCBCTTCEECSS---------CCEEEEEEECTTSCEEEEEECGGGG-----GCC----CCTTTTTTCSEE
T ss_pred HHHHHHHHHcCCccceeEecCC---------CCCEEEEEEcCCCCEEEEecCChhh-----hHH----HHHHHhhcCCEE
Confidence 9999999999999999865332 4999999999888887755432211 111 224467899999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHHHH
Q 011562 238 FCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITA 317 (483)
Q Consensus 238 ~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~ 317 (483)
++++ ..+.+.+.++++.++++|+++++|++++.. ..+.+..+++++|++++|++|++.|++.
T Consensus 148 ~~~~----~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~--------~~~~~~~ll~~~dil~~N~~Ea~~l~g~------ 209 (310)
T 3go6_A 148 LTQL----EIPVATALAAARAAQSADAVVMVNASPAGQ--------DRSSLQDLAAIADVVIANEHEANDWPSP------ 209 (310)
T ss_dssp EECS----SSCHHHHHHHHHHHHHTTCEEEEECCSSSC--------CHHHHHHHHHHCSEEEEEHHHHHHSSSC------
T ss_pred EECC----CCCHHHHHHHHHHHHHcCCEEEEcCCcccc--------chHHHHHHHhhCCEEEeCHHHHHHHhCC------
Confidence 9985 566789999999999999999999986532 2456778999999999999999999874
Q ss_pred HHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHc----CCCHHHHHHHHHHHH
Q 011562 318 GQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIH----NMPTVNTLTIANAVG 393 (483)
Q Consensus 318 ~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~----g~~l~~al~~A~aaA 393 (483)
. +.||||+|++|++++++++.+++|+++++++||+||||+|+|||+++|++ |+++++|+++|+++|
T Consensus 210 --------~--~~vvvt~G~~Ga~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~~~~l~~~~~~g~~l~~a~~~A~~~a 279 (310)
T 3go6_A 210 --------P--THFVITLGVRGARYVGADGVFEVPAPTVTPVDTAGAGDVFAGVLAANWPRNPGSPAERLRALRRACAAG 279 (310)
T ss_dssp --------C--SEEEEECGGGCEEEEETTEEEEECCCCCCCSCCTTHHHHHHHHHHHHCCSSSCCHHHHHHHHHHHHHHH
T ss_pred --------C--CEEEEEECCCCEEEEECCceEEeCCCCCCcCcCCCchHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 2 78999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHhcccCCCCCCCCHHHHHHHHHhcC
Q 011562 394 AATAMGCGAGRNVATLERVIELMRASN 420 (483)
Q Consensus 394 a~~v~~~G~~~~~p~~~ev~~~l~~~~ 420 (483)
++++++.|+..++|+++|+++++++..
T Consensus 280 a~~v~~~G~~~~~p~~~ev~~~l~~~~ 306 (310)
T 3go6_A 280 ALATLVSGVGDCAPAAAAIDAALRANR 306 (310)
T ss_dssp HHHTTSSCSTTCCCCHHHHHHHHHTC-
T ss_pred HHHhCCCCCCCCCCCHHHHHHHHHhcc
Confidence 999999999878999999999998753
No 12
>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A*
Probab=100.00 E-value=9.6e-45 Score=366.51 Aligned_cols=311 Identities=16% Similarity=0.204 Sum_probs=253.8
Q ss_pred CCCCccEEEECCceeEEEecCCC-------CCCCChhhh-----hHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCce
Q 011562 78 GVKSIDVATLGNLCVDIVLNVPQ-------LPPPSRDAR-----KAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDC 145 (483)
Q Consensus 78 ~~~~~~VlviG~~~iD~~~~v~~-------~p~~~~~~~-----~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v 145 (483)
.|++++|+|+|++++|++..++. +++++.... ......+ ......+||++.|+|+++++||.++
T Consensus 22 ~m~~~~v~~iG~~~vD~~~~v~~~~l~~~~l~~g~~~li~~~~~~~l~~~~----~~~~~~~GG~~~N~A~~la~LG~~~ 97 (352)
T 4e3a_A 22 SMTRFDVLTVGNAIVDIISRCNDQFLIDNQITKAAMNLIDAERAELLYSRM----GPALEASGGSAGNTAAGVANLGGKA 97 (352)
T ss_dssp -CCSEEEEEECCCEEEEEEECCHHHHHHTTCCTTSEEECCHHHHHHHHHHS----CSCEEEECCHHHHHHHHHHHHTCCE
T ss_pred HCCcccEEEECCceeeEEEecCHHHHHHcCCCCCcceEeCHHHHHHHHHHh----hhccEecCCHHHHHHHHHHHcCCCe
Confidence 35679999999999999999987 665553221 1111111 1335677888999999999999999
Q ss_pred EEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccH
Q 011562 146 VTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSA 225 (483)
Q Consensus 146 ~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~ 225 (483)
.++|.+|+|.+|+++++.|++.||+++++.+.++. +|+.++++++++|+|++....+.......+ .+.
T Consensus 98 ~~ig~vG~D~~G~~l~~~l~~~GV~~~~~~~~~~~--------~T~~~~v~v~~~g~r~~~~~~ga~~~l~~~---~~~- 165 (352)
T 4e3a_A 98 AYFGNVAADQLGDIFTHDIRAQGVHYQTKPKGAFP--------PTARSMIFVTEDGERSMNTYLGACVELGPE---DVE- 165 (352)
T ss_dssp EEECCCCSSHHHHHHHHHHHHTTCEECCCCCCSSS--------CCEEEEEEECTTSCEEEEEECGGGGGCCGG---GCC-
T ss_pred EEEEEECCChHHHHHHHHHHHcCCccceeeccCCC--------CCeEEEEEEcCCCceEEEeccChhhcCChh---hCC-
Confidence 99999999999999999999999999998655443 499999999999998875433322111111 122
Q ss_pred HHHHhhcCCcEEEEecCCC-CCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc--CCCEEEcCH
Q 011562 226 EVKTAIKHSKVLFCNGYGF-DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS--TSDVLLLTS 302 (483)
Q Consensus 226 ~~~~~l~~~~~v~isG~~~-~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~--~~dil~~N~ 302 (483)
...++.++++|++||.+ .+.+.+.+.++++.++++|+++++|++... .....++.+.++++ ++|++++|+
T Consensus 166 --~~~~~~~~~v~~~G~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~~~l~~ll~~~~~dil~~N~ 238 (352)
T 4e3a_A 166 --ADVVADAKVTYFEGYLWDPPRAKEAILDCARIAHQHGREMSMTLSDSF-----CVDRYRGEFLDLMRSGKVDIVFANR 238 (352)
T ss_dssp --HHHHHTEEEEEEEGGGGSSSSHHHHHHHHHHHHHHTTCEEEEECCCHH-----HHHHHHHHHHHHHHTTSCCEEEEEH
T ss_pred --HHHHhhCCEEEEeeeecCCchHHHHHHHHHHHHHHcCCEEEEECCchh-----hHHHHHHHHHHHhcccCCcEEEeCH
Confidence 23578899999999975 455678899999999999999999996311 11334667888998 899999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCcccc-ccCCCCchHHHHHHHHHHHHcCCC
Q 011562 303 DEAESLTGLRNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVN-VTDTVGCGDSFVAAVAFGFIHNMP 381 (483)
Q Consensus 303 ~Ea~~l~g~~~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~-vvDttGAGDaF~Ag~l~gl~~g~~ 381 (483)
+|++.++|..++.++++.|.+ +. +.||||+|++|++++++++.+++|+++++ ++|||||||+|+|||+++|++|++
T Consensus 239 ~Ea~~l~g~~~~~~a~~~l~~-~~--~~vvvT~G~~G~~~~~~~~~~~~~~~~v~~vvDttGAGDaF~agfl~~l~~g~~ 315 (352)
T 4e3a_A 239 QEALSLYQTDDFEEALNRIAA-DC--KIAAVTMSENGAVILKGRERYYVNAIRIREVVDTTGAGDLFASGFLYGYTQGRS 315 (352)
T ss_dssp HHHHHHTTCSCHHHHHHHHHH-HS--SEEEEECGGGCEEEEETTEEEEECCCCCSCCSCCTTHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCCHHHHHHHHhc-CC--CEEEEEECCCceEEEECCEEEEECCccCCCCcCCCChHHHHHHHHHHHHHcCCC
Confidence 999999999899988888876 44 78999999999999999999999999986 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHH
Q 011562 382 TVNTLTIANAVGAATAMGCGAGRNVATLERVIE 414 (483)
Q Consensus 382 l~~al~~A~aaAa~~v~~~G~~~~~p~~~ev~~ 414 (483)
+++|+++|+++|+.++++.|+.+..|.++++++
T Consensus 316 l~~a~~~A~~aAa~~v~~~G~~~~~~~~~~~~~ 348 (352)
T 4e3a_A 316 LEDCGKLGCLAAGIVIQQIGPRPMTSLSEAAKQ 348 (352)
T ss_dssp HHHHHHHHHHHHHHHTTSSSSSCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHH
Confidence 999999999999999999999888877777664
No 13
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A
Probab=100.00 E-value=8.4e-45 Score=359.37 Aligned_cols=297 Identities=19% Similarity=0.291 Sum_probs=240.9
Q ss_pred CCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHH
Q 011562 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (483)
Q Consensus 80 ~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~ 159 (483)
+|++|+|+|++++|++..++++|.+++..+. ......+||++.|+|+++++||.++.++|.+|+|.+|++
T Consensus 4 ~m~~i~viG~~~iD~~~~~~~~p~~~~~~~~----------~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D~~g~~ 73 (302)
T 2c4e_A 4 KMEKITCVGHTALDYIFNVEKFPEPNTSIQI----------PSARKYYGGAAANTAVGIKKLGVNSELLSCVGYDFKNSG 73 (302)
T ss_dssp CEEEEEEESCCEEEEEEECSSCCCTTCCCCC----------SCEEEEEECHHHHHHHHHHHTTCEEEEECEECTTTTTSH
T ss_pred CcCcEEEECceeEEEEecccccCCCCceeee----------cceeecCCCHHHHHHHHHHHCCCceEEEEEEeCCCchHH
Confidence 4558999999999999999999887754321 134556789999999999999999999999999999999
Q ss_pred HHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEE
Q 011562 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (483)
Q Consensus 160 i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~i 239 (483)
+++.|+++||+++++...++. +|+.++++++++|++.+............ +.+. . .+++++|+
T Consensus 74 i~~~l~~~gv~~~~~~~~~~~--------~T~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~-----~-~~~~~v~~ 136 (302)
T 2c4e_A 74 YERYLKNLDINISKLYYSEEE--------ETPKAWIFTDKDNNQITFFLWGAAKHYKE---LNPP-----N-FNTEIVHI 136 (302)
T ss_dssp HHHHHHHTTCBCTTCEECSSS--------CCCEEEEEECSSCCEECCEECGGGGGGGG---CCCC-----C-CCEEEEEE
T ss_pred HHHHHHHcCCcccceEeeCCC--------CCceEEEEECCCCCEEEEEeCChhhhCCH---hhcC-----c-ccCCEEEE
Confidence 999999999999988765443 38889999988888876543221111111 1111 1 57899999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHHHHHH
Q 011562 240 NGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQ 319 (483)
Q Consensus 240 sG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~ 319 (483)
++. .++.+.++++.++++| ++++||+.+... + ..+.+.++++++|++++|++|++.|+|..+..+.
T Consensus 137 ~~~-----~~~~~~~~~~~a~~~g-~v~~D~~~~~~~-~-----~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~-- 202 (302)
T 2c4e_A 137 ATG-----DPEFNLKCAKKAYGNN-LVSFDPGQDLPQ-Y-----SKEMLLEIIEHTNFLFMNKHEFERASNLLNFEID-- 202 (302)
T ss_dssp CSS-----CHHHHHHHHHHHBTTB-EEEECCGGGGGG-C-----CHHHHHHHHHTCSEEEEEHHHHHHHHHHHTCCHH--
T ss_pred eCC-----CcHHHHHHHHHHHhcC-CEEEeCchhhhh-h-----hHHHHHHHHhcCCEEEcCHHHHHHHhCCCCccHH--
Confidence 853 2378889999999999 999999854221 1 1456778899999999999999999875322222
Q ss_pred HHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCcccc-ccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Q 011562 320 ELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVN-VTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAM 398 (483)
Q Consensus 320 ~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~-vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~ 398 (483)
+|++. + +.||||+|++|++++++++.+++|+++++ ++||+||||+|+|||+++|++|+++++|+++|+++|+.+++
T Consensus 203 ~l~~~-~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~~vdt~GAGDaf~a~~~~~l~~g~~~~~a~~~a~~~aa~~~~ 279 (302)
T 2c4e_A 203 DYLER-V--DALIVTKGSKGSVIYTKDKKIEIPCIKAGKVIDPTGAGDSYRAGFLSAYVKGYDLEKCGLIGAATASFVVE 279 (302)
T ss_dssp HHHTT-C--SEEEEECGGGCEEEECSSCEEEECCCCCSCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHhc-C--CEEEEEECCCceEEEeCCcEEEeCCccCCcCCcCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc
Confidence 56665 4 78999999999999988888999999998 99999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCHHHHHHHHHhcC
Q 011562 399 GCGAGRNVATLERVIELMRASN 420 (483)
Q Consensus 399 ~~G~~~~~p~~~ev~~~l~~~~ 420 (483)
+.|+...+|+++|+++++++..
T Consensus 280 ~~G~~~~~p~~~ev~~~~~~~~ 301 (302)
T 2c4e_A 280 AKGCQTNLPTWDKVVERLEKHR 301 (302)
T ss_dssp SSSSSTTCCCHHHHHHHHHHC-
T ss_pred cccccccCCCHHHHHHHHHhcC
Confidence 9998778999999999988753
No 14
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii}
Probab=100.00 E-value=2.7e-46 Score=374.19 Aligned_cols=306 Identities=24% Similarity=0.374 Sum_probs=226.1
Q ss_pred CCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHH
Q 011562 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (483)
Q Consensus 80 ~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~ 159 (483)
++++|+|+|++++|++...+..|.... ......+||++.|+|+++++||.++.++|.+|+|.+|++
T Consensus 20 ~~~~v~viG~~~~D~~~~~~~~p~~~~--------------~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~g~~ 85 (327)
T 3hj6_A 20 GDLDVVSLGEILVDMISTEEVNSLSQS--------------REYTRHFGGSPANIAVNLSRLGKKVALISRLGADAFGNY 85 (327)
T ss_dssp --CCEEEESCCEEEEECCCCCSSGGGC--------------CEEEEEEECHHHHHHHHHHHTTCCEEEECEEESSHHHHH
T ss_pred CCCCEEEEccceEEEeccCCCCCcccc--------------ceeeeecCcHHHHHHHHHHHcCCcEEEEEEeCCCHHHHH
Confidence 678999999999999988777664211 234556788899999999999999999999999999999
Q ss_pred HHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEE
Q 011562 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (483)
Q Consensus 160 i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~i 239 (483)
+++.|+++||+++++.+.++.+ |+.+++..+ +|++.+........ .+. ..+.....+++++++|+
T Consensus 86 i~~~l~~~gv~~~~v~~~~~~~--------t~~~~v~~~-~g~~~~~~~~~a~~-----~~~-~~~~~~~~~~~~~~v~~ 150 (327)
T 3hj6_A 86 LLDVLKGEQIITDGIQQDKERR--------TTIVYVSKS-TRTPDWLPYREADM-----YLQ-EDDIIFELIKRSKVFHL 150 (327)
T ss_dssp HHHHHHHTTCBCTTCEEESSSC--------CCEEEECCC-TTCCCEEEECSGGG-----GCC-SCCCHHHHHC--CEEEE
T ss_pred HHHHHHHcCCCcccEEEcCCCC--------ceEEEEEec-CCCccEEEecChhh-----hCC-hhhcCHhHhccCCEEEE
Confidence 9999999999999997655433 776666655 46766543322110 110 00112335788999999
Q ss_pred ecCCC-CCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHHHHH
Q 011562 240 NGYGF-DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAG 318 (483)
Q Consensus 240 sG~~~-~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~ 318 (483)
+|+.+ .+.+.+.+.++++.++++|+++++||+++.. +|....+..+.+.++++++|++++|++|++.++|..+..+++
T Consensus 151 ~g~~l~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~~ 229 (327)
T 3hj6_A 151 STFILSRKPARDTAIKAFNYAREQGKIVCFDPCYRKV-LWPEGDDGAGVVEEIISRADFVKPSLDDARHLFGPDSPENYV 229 (327)
T ss_dssp ESHHHHSHHHHHHHHHHHHHHHHTTCEEEEECCCCGG-GSCSSSCSHHHHHHHHTTCSEECCBHHHHHHHHTTSCSSGGG
T ss_pred CchHhcCchhHHHHHHHHHHHHHCCCEEEEECCCchh-hcCCHHHHHHHHHHHHhhCCEEecCHHHHHHHhCCCCHHHHH
Confidence 98753 2345678899999999999999999997764 333334456778899999999999999999999987777788
Q ss_pred HHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Q 011562 319 QELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAM 398 (483)
Q Consensus 319 ~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~ 398 (483)
+.|++.|+ +.||||+|++|++++++++.+++|+++++++|||||||+|+|||+++|++|+++++|+++|+++|+++++
T Consensus 230 ~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaf~ag~~~~l~~g~~~~~a~~~A~a~aa~~v~ 307 (327)
T 3hj6_A 230 KRYLELGV--KAVILTLGEEGVIASDGEEIIRIPAFSEDAVDVTGAGDAFWSGFICGLLDGYTVKRSIKLGNGVAAFKIR 307 (327)
T ss_dssp GGGTTTTC--SEEEEECSTTCEEEECSSCEEESCSSTTC-----CCHHHHHHHHHHTTSSCSTTHHHHHHHHCCCSSCC-
T ss_pred HHHHhCCC--CEEEEEECCCceEEEeCCeeEEcCCcccccCCCcChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 88887766 7899999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCHHHHHHHHH
Q 011562 399 GCGAGRNVATLERVIELMR 417 (483)
Q Consensus 399 ~~G~~~~~p~~~ev~~~l~ 417 (483)
+.|+..++|+++|++++++
T Consensus 308 ~~G~~~~~p~~~ev~~~l~ 326 (327)
T 3hj6_A 308 GVGALSPVPSKEDIIKEYN 326 (327)
T ss_dssp -------------------
T ss_pred CCCCCCCCCCHHHHHHHhc
Confidence 9998878999999998874
No 15
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A*
Probab=100.00 E-value=7.1e-45 Score=359.44 Aligned_cols=289 Identities=20% Similarity=0.293 Sum_probs=239.0
Q ss_pred CccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHH
Q 011562 81 SIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (483)
Q Consensus 81 ~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i 160 (483)
+|+|+|+|++++|+++.++++|.+++..+. ......+||++.|+|++|++||.++.++|.+|+|.+|+++
T Consensus 2 ~~~i~viG~~~iD~~~~~~~~p~~g~~~~~----------~~~~~~~GG~~~NvA~~la~lG~~~~~i~~vG~D~~g~~i 71 (299)
T 3ikh_A 2 SLRVYVTGNITVDETWSIPDIPKKGASIHG----------VKVSQDIGGKGANQAIILSRCGIETRLIAATGNDSNGAWI 71 (299)
T ss_dssp CCCEEEECCCEEEEEEECSSCCCTTCEEEC----------EEEEEEEECHHHHHHHHHHHTTCCEEEECCCCSSHHHHHH
T ss_pred CceEEEECceEEEEEEecCCCCCCCCeEEe----------eeeeeccCCHHHHHHHHHHHCCCCeEEEEEECCCHHHHHH
Confidence 468999999999999999999988765432 1335567888999999999999999999999999999999
Q ss_pred HHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEe
Q 011562 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCN 240 (483)
Q Consensus 161 ~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~is 240 (483)
++.|+++||+++++.. ++ .+|+.++++++++|++.++...........+.+. ...+.+..+++++++
T Consensus 72 ~~~l~~~gv~~~~v~~-~~--------~~T~~~~~~~~~~g~~~~~~~~~a~~~l~~~~~~----~~~~~~~~~~~v~~~ 138 (299)
T 3ikh_A 72 RQQIKNEPLMLLPDGH-FN--------QHSDTSIILNSADGDNAIITTTAAADTFSLDEMI----PHMADAVAGDILLQQ 138 (299)
T ss_dssp HHHGGGSSCEEESSSC-CS--------SCCEEEEEECSSSCSCEEEEECHHHHHCCHHHHG----GGGTTCCTTCEEEEC
T ss_pred HHHHHHcCCceeeeEe-cC--------CCCcEEEEEEcCCCCeEEEEeCCccccCCHHHHH----HHHhhhccCCEEEEC
Confidence 9999999999998842 32 2489999999988888765432110000111111 112356889999998
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHHHHHHH
Q 011562 241 GYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQE 320 (483)
Q Consensus 241 G~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~~ 320 (483)
| ..+.+.+.++++.++++|+++++||++... .+..+++++|++++|++|++.|++
T Consensus 139 g----~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-----------~~~~ll~~~dil~~N~~E~~~l~g---------- 193 (299)
T 3ikh_A 139 G----NFSLDKTRALFQYARSRGMTTVFNPSPVNP-----------DFCHLWPLIDIAVVNESEAELLQP---------- 193 (299)
T ss_dssp S----CSCHHHHHHHHHHHHHTTCEEEECCCSCCG-----------GGGGCGGGCSEEEEEHHHHHHHCC----------
T ss_pred C----CCCHHHHHHHHHHHHHcCCEEEEccccchh-----------hHHHHHhhCCEEEecHHHHHHHhc----------
Confidence 6 456788999999999999999999976431 345789999999999999999987
Q ss_pred HHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHH-HHHHHHHcCCCHHH-HHHHHHHHHHHHhc
Q 011562 321 LLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVA-AVAFGFIHNMPTVN-TLTIANAVGAATAM 398 (483)
Q Consensus 321 l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~A-g~l~gl~~g~~l~~-al~~A~aaAa~~v~ 398 (483)
.|+ +.||||+|++|++++++++.+++|+++++++||+||||+|+| ||+++|++|+++++ |+++|+++|+++++
T Consensus 194 ---~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~a~~~~~~l~~g~~~~~~a~~~a~~~aa~~v~ 268 (299)
T 3ikh_A 194 ---YGV--KTLVITQGAAGAWLVQEGQRQFCPAVPAEALDTTGAGDTFLAVMLASALLRGVAPDALALAHASRAAAITVS 268 (299)
T ss_dssp ---CSC--SEEEEECGGGCEEEECSSCEEEECCCCCCCSCCTTHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred ---CCC--CEEEEEECCCceEEEeCCceEEeCCCCCccCCCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC
Confidence 444 889999999999999988899999999999999999999999 99999999999999 99999999999999
Q ss_pred ccCCCCCCCCHHHHHHHHHhcCCC
Q 011562 399 GCGAGRNVATLERVIELMRASNLN 422 (483)
Q Consensus 399 ~~G~~~~~p~~~ev~~~l~~~~~~ 422 (483)
+.|+..++|+++|+++++++...+
T Consensus 269 ~~G~~~~~p~~~ev~~~l~~~~~~ 292 (299)
T 3ikh_A 269 RRGTLSAFPGSRELAALLTTDGAE 292 (299)
T ss_dssp SSSSTTTSCCHHHHHHHHC-----
T ss_pred CCcccccCCCHHHHHHHHHhcccc
Confidence 999988899999999999876543
No 16
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Probab=100.00 E-value=2.2e-43 Score=353.78 Aligned_cols=311 Identities=20% Similarity=0.316 Sum_probs=244.6
Q ss_pred CCCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhH
Q 011562 79 VKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGR 158 (483)
Q Consensus 79 ~~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~ 158 (483)
+++++|+|+|++++|++......|.. . .......+||++.|+|+++++||.++.++|.+|+|.+|+
T Consensus 9 ~~~~~i~viG~~~~D~~~~~~~~~~~--~------------~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~ 74 (332)
T 2qcv_A 9 DREFDLIAIGRACIDLNAVEYNRPME--E------------TMTFSKYVGGSPANIVIGSSKLGLKAGFIGKIADDQHGR 74 (332)
T ss_dssp CCSEEEEEESCCEEEEEESSCSSCGG--G------------CCCEEEEEESHHHHHHHHHHHTTCCEEEEEEECSSHHHH
T ss_pred ccCCcEEEECcceEEEecCCCCCCcc--c------------cceeEecCCCHHHHHHHHHHHcCCceEEEEEeCCCHHHH
Confidence 35678999999999999876544421 0 013455678889999999999999999999999999999
Q ss_pred HHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCccccc-ccCC-CCChhhhhhhhccHHHHHhhcCCcE
Q 011562 159 FLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCS-RADF-SKEPAFSWMNKLSAEVKTAIKHSKV 236 (483)
Q Consensus 159 ~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~l~~~~~ 236 (483)
++++.|+++||+++++...++. .+|+.+++.++.+|++.+.. +... ...... +.+. ...++++++
T Consensus 75 ~l~~~L~~~gV~~~~v~~~~~~-------~~t~~~~v~~~~~g~~~~~~~~~~~a~~~l~~---~~~~---~~~~~~~~~ 141 (332)
T 2qcv_A 75 FIESYMRGVGVDTSNLVVDQEG-------HKTGLAFTEIKSPEECSILMYRQDVADLYLSP---EEVN---EAYIRRSKL 141 (332)
T ss_dssp HHHHHHHHTTCBCTTEEECSSC-------CCCCEEEEEEEETTEEEEEEECTTCGGGGCCG---GGCC---HHHHTTEEE
T ss_pred HHHHHHHHcCCCCcceEecCCC-------CCceEEEEEEcCCCCccEEEECCcchhhhCCH---hHCC---HHHHccCCE
Confidence 9999999999999999765421 13777777766556554422 2110 000011 1111 124678999
Q ss_pred EEEecCCCC-CCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCC---C
Q 011562 237 LFCNGYGFD-ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL---R 312 (483)
Q Consensus 237 v~isG~~~~-~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~---~ 312 (483)
+|++|+.+. +.+.+.+.++++.++++|+++++||+.+... |.......+.+..+++++|++++|++|++.|+|. .
T Consensus 142 v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~-~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~ 220 (332)
T 2qcv_A 142 LLVSGTALSKSPSREAVLKAIRLAKRNDVKVVFELDYRPYS-WETPEETAVYYSLVAEQSDIVIGTREEFDVLENRTEKG 220 (332)
T ss_dssp EEEEGGGGSSTTHHHHHHHHHHHHHHTTCEEEEECCCCGGG-SSCHHHHHHHHHHHHHHCSEEEEEHHHHHHHTTCSSCC
T ss_pred EEEeCccccCchhHHHHHHHHHHHHHCCCEEEEcCcCchhh-cCCHHHHHHHHHHHHHhCCEEEccHHHHHHHhCCCcCC
Confidence 999998754 3345788899999999999999999876542 3332344566788999999999999999999987 4
Q ss_pred CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEEC-CeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 011562 313 NPITAGQELLRKGLRTKWVVVKMGPRGSILVTK-SSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANA 391 (483)
Q Consensus 313 ~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~-~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~a 391 (483)
+..+++++|++.|+ +.||||+|++|++++++ ++.+++|+++++++||+||||+|+|||+++|++|+++++|+++|++
T Consensus 221 ~~~~~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~v~vvdt~GAGDaf~a~~~~~l~~g~~~~~a~~~A~~ 298 (332)
T 2qcv_A 221 DNDETIRYLFKHSP--ELIVIKHGVEGSFAYTKAGEAYRGYAYKTKVLKTFGAGDSYASAFLYALISGKGIETALKYGSA 298 (332)
T ss_dssp CHHHHHHHHTTSSC--SEEEEECGGGCEEEEETTSCEEEECCBCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC--CEEEEEECCcceEEEecCCceEEcCCCCccccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 67788889988876 78999999999999988 6688999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCCCCHHHHHHHHHhc
Q 011562 392 VGAATAMGCGAGRNVATLERVIELMRAS 419 (483)
Q Consensus 392 aAa~~v~~~G~~~~~p~~~ev~~~l~~~ 419 (483)
+|+.++++.|+...+|+++|+++++++.
T Consensus 299 ~aa~~v~~~G~~~~~p~~~ev~~~l~~~ 326 (332)
T 2qcv_A 299 SASIVVSKHSSSDAMPSVEEIEALIEKD 326 (332)
T ss_dssp HHHHHHHC-----CCCCHHHHHHHHHHT
T ss_pred HHHHHHccCCCccCCCCHHHHHHHHhcC
Confidence 9999999999877899999999998764
No 17
>3vas_A Putative adenosine kinase; ribokinase, enzyme, transferase; HET: ADN; 2.26A {Schistosoma mansoni} PDB: 4dc3_A* 3vaq_A* 3uq6_A* 3uq9_A*
Probab=100.00 E-value=7.8e-45 Score=369.65 Aligned_cols=305 Identities=14% Similarity=0.197 Sum_probs=248.3
Q ss_pred CCCCccEEEECCceeEEEecCCC--------------------CCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHH
Q 011562 78 GVKSIDVATLGNLCVDIVLNVPQ--------------------LPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIA 137 (483)
Q Consensus 78 ~~~~~~VlviG~~~iD~~~~v~~--------------------~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~ 137 (483)
.|++.+|+++|++++|+++.++. +|..++... .......+||++.|+|++
T Consensus 21 ~m~~~~v~~iG~~~vD~~~~v~~~~l~~~~l~~g~~~l~~~~~~P~~ge~~~----------~~~~~~~~GG~~~N~A~~ 90 (370)
T 3vas_A 21 DLSEGYVFGMGNPLLDIIVDADDFMYRKYNLKKDNIVLAEEKHMTIYDEIQK----------KKKLNYIAGGATLNTVKM 90 (370)
T ss_dssp CCCTTCEEEEECCEEEEEEECCTHHHHHTTCCTTEEEECCGGGTHHHHHHTT----------SSSCEEEEECHHHHHHHH
T ss_pred ccCCccEEEECCcceeEEEecCHHHHHHcCCCCCceEEccHHHHHHHHHHhh----------cCCeEEecCCHHHHHHHH
Confidence 35678999999999999999985 443333221 124566778889999999
Q ss_pred HHHc---CCceEEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCC
Q 011562 138 AARL---GLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKE 214 (483)
Q Consensus 138 larL---G~~v~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~ 214 (483)
+++| |.++.++|.+|+|.+|+++++.|++.||+++++...++. +|+.++++++ +|+++++...+....
T Consensus 91 la~L~~~G~~~~~ig~vG~D~~G~~~~~~L~~~GV~~~~~~~~~~~--------~Tg~~~i~v~-~g~rt~~~~~ga~~~ 161 (370)
T 3vas_A 91 IQWIIQKPFVCSYVGCIGADIQGKYIKNDCSALDLVTEFQIAEEPL--------MTGKVAVLVS-EKLRSMVTYLGAACD 161 (370)
T ss_dssp HHHHHCCTTCEEEEEEECSSHHHHHHHHHHHHTTCEECCEECCTTC--------CEEEEEEEEC-SSCEEEEEEEEGGGG
T ss_pred HHHhcCCCCcEEEEEEEcCChhHHHHHHHHHHcCCcccccccCCCC--------CceEEEEEEe-CCceeEEEccchhhh
Confidence 9999 999999999999999999999999999999998653332 4999999998 788887654332222
Q ss_pred hhhhhhhhccHHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcC
Q 011562 215 PAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLST 294 (483)
Q Consensus 215 ~~~~~~~~l~~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~ 294 (483)
...+++.. ..+.+.+.+++++|++||.+. .+.+.+.++++.++++|+++++|+... ++ ....++.+.+++++
T Consensus 162 l~~~~~~~--~~~~~~~~~~~~v~~~g~~~~-~~~~~~~~~~~~a~~~g~~v~ld~~~~---~~--~~~~~~~l~~ll~~ 233 (370)
T 3vas_A 162 LSLAHIEQ--PHVWSLVEKAQVYYIAGFVIN-TCYEGMLKIAKHSLENEKLFCFNLSAP---FL--SQFNTKEVDEMISY 233 (370)
T ss_dssp CCHHHHTS--HHHHHHHHHCSEEEEEGGGHH-HHHHHHHHHHHHHHHTTCEEEEECCCH---HH--HHHCHHHHHHHHTT
T ss_pred CCHHHcCc--hhhHHHHhhCCEEEEEeeecc-CCHHHHHHHHHHHHHcCCEEEEECCcH---HH--HHHHHHHHHHHHhh
Confidence 22222221 223456788999999998754 567889999999999999999999531 11 12335678899999
Q ss_pred CCEEEcCHHHHHHhhCC-----CCHHHHHHHHHHc-------CCCccEEEEEeCCCcEEEEE--CCeeEEecCccc---c
Q 011562 295 SDVLLLTSDEAESLTGL-----RNPITAGQELLRK-------GLRTKWVVVKMGPRGSILVT--KSSISCAPAFKV---N 357 (483)
Q Consensus 295 ~dil~~N~~Ea~~l~g~-----~~~~~~~~~l~~~-------g~~~~~vVvT~G~~G~~~~~--~~~~~~vpa~~v---~ 357 (483)
+|++++|++|++.|++. .++.++++.|.+. |+ +.||||+|++|+++++ +++.+++|++++ +
T Consensus 234 ~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~~~~~~~~g~--~~VvvT~G~~Ga~~~~~~~~~~~~~~~~~v~~~~ 311 (370)
T 3vas_A 234 SNIVFGNESEAEAYGEVHGLLEDTVHATARYIADLPFADGKKRK--RLVIITRGKNPLLYTDSSDSEIHQFMVEQFKDDQ 311 (370)
T ss_dssp CSEEEEEHHHHHHHHHHTTCCSSHHHHHHHHHHHSCCTTCCCCC--CEEEEEETTEEEEEEETTCSSCEEECCCCCCTTT
T ss_pred CCEEEcCHHHHHHHhcccCCCccCHHHHHHHHHhhcccccccCC--CEEEEecCCCceEEEEcCCCeEEEEecccccCCC
Confidence 99999999999999875 5688889999885 55 8899999999999999 788899999987 8
Q ss_pred ccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHH
Q 011562 358 VTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAMGCGAGRNVATLERVI 413 (483)
Q Consensus 358 vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~~~G~~~~~p~~~ev~ 413 (483)
++||+||||+|+|||+++|++|+++++|+++|+++|+.++++.|+. +|+.+++.
T Consensus 312 vvDttGAGDaF~ag~l~~l~~g~~l~~a~~~A~aaAa~~v~~~G~~--~p~~~~~~ 365 (370)
T 3vas_A 312 IIDTNGAGDAFAAGFIADYIRGKPMITSLHAAVKAAAYIICRSGFS--LGSRDSYS 365 (370)
T ss_dssp CSCCTTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHTSSSSC--CCCGGGGC
T ss_pred cCCCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcccCCc--CCCCccce
Confidence 9999999999999999999999999999999999999999999974 77777664
No 18
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A*
Probab=100.00 E-value=6.9e-44 Score=354.52 Aligned_cols=305 Identities=21% Similarity=0.280 Sum_probs=242.5
Q ss_pred CccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHH
Q 011562 81 SIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (483)
Q Consensus 81 ~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i 160 (483)
||+|+|+|++++|++.. .++...+. ......+||++.|+|+++++||.++.++|.+|+|.+|+++
T Consensus 1 m~~v~viG~~~~D~~~~-----~~~~~~~~----------~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D~~g~~~ 65 (313)
T 2v78_A 1 MVDVIALGEPLIQFNSF-----NPGPLRFV----------NYFEKHVAGSELNFCIAVVRNHLSCSLIARVGNDEFGKNI 65 (313)
T ss_dssp -CCEEEECCCEEEEEES-----SSSCGGGC----------CEEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHHH
T ss_pred CCeEEEECcceEEEecC-----CCCccccc----------ceeEecCCChHHHHHHHHHHCCCcEEEEEEeCCCHHHHHH
Confidence 35899999999999962 22222110 1334567888999999999999999999999999999999
Q ss_pred HHHHHHcCCCccceeecCCCCccccCcccceeEEEE--ECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEE
Q 011562 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVL--VDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLF 238 (483)
Q Consensus 161 ~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~--vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~ 238 (483)
++.|+++||+++++...++. +|+.+++. ++++|++.+............. .+.+.. ..+++++++|
T Consensus 66 ~~~l~~~gv~~~~v~~~~~~--------~t~~~~~~~~~~~~g~~~~~~~~~~~a~~~l~-~~~~~~---~~~~~~~~v~ 133 (313)
T 2v78_A 66 IEYSRAQGIDTSHIKVDNES--------FTGIYFIQRGYPIPMKSELVYYRKGSAGSRLS-PEDINE---NYVRNSRLVH 133 (313)
T ss_dssp HHHHHHTTCBCTTEEEETTS--------CCCEEEEEESSSSTTCEEEEEECTTCSGGGCC-GGGCCH---HHHHTSSEEE
T ss_pred HHHHHHcCCcCceEEEcCCC--------CceEEEEEEecCCCCCeeEEEeCCcChhHhCC-hhhCCH---HHhcCCCEEE
Confidence 99999999999999775543 38888888 8877877654221111000100 011222 3467899999
Q ss_pred EecCCC--CCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCC--EEEcCHHHHHHhhCCCCH
Q 011562 239 CNGYGF--DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSD--VLLLTSDEAESLTGLRNP 314 (483)
Q Consensus 239 isG~~~--~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~d--il~~N~~Ea~~l~g~~~~ 314 (483)
++|+.+ .+.+.+.+.++++.++++ ++||+.+.. +|......++.+.++++++| ++++|++|++.++|..++
T Consensus 134 ~~g~~~~~~~~~~~~~~~~~~~a~~~----~~D~~~~~~-~~~~~~~~~~~~~~~l~~~d~~il~~N~~E~~~l~g~~~~ 208 (313)
T 2v78_A 134 STGITLAISDNAKEAVIKAFELAKSR----SLDTNIRPK-LWSSLEKAKETILSILKKYDIEVLITDPDDTKILLDVTDP 208 (313)
T ss_dssp EEHHHHHHCHHHHHHHHHHHHHCSSE----EEECCCCGG-GSSCHHHHHHHHHHHHHHSCEEEEEECHHHHHHHHSCCCH
T ss_pred EcCchhhcChHHHHHHHHHHHHHHHh----CcCCcCChh-hcCCHHHHHHHHHHHHHhcCeeEEECcHHHHHHHhCCCCH
Confidence 998764 233446666777766544 899987654 33322344567788999999 999999999999999899
Q ss_pred HHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011562 315 ITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGA 394 (483)
Q Consensus 315 ~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa 394 (483)
.+++++|++.|+ +.||||+|++|++++++++.+++|+++++++|||||||+|+|||+++|++|+++++|+++|+++|+
T Consensus 209 ~~~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~ag~~~~l~~g~~~~~a~~~a~~~aa 286 (313)
T 2v78_A 209 DEAYRKYKELGV--KVLLYKLGSKGAIAYKDNVKAFKDAYKVPVEDPTGAGDAMAGTFVSLYLQGKDIEYSLAHGIAAST 286 (313)
T ss_dssp HHHHHHHHHTTE--EEEEEECGGGCEEEEETTEEEEECCCCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC--CEEEEEECCCCcEEeeCCcEEEeCCCcCCccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999765 889999999999999888889999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCCCCHHHHHHHHHhc
Q 011562 395 ATAMGCGAGRNVATLERVIELMRAS 419 (483)
Q Consensus 395 ~~v~~~G~~~~~p~~~ev~~~l~~~ 419 (483)
.++++.|+...+|++++++++++++
T Consensus 287 ~~v~~~G~~~~~~~~~~v~~~~~~~ 311 (313)
T 2v78_A 287 LVITVRGDNELTPTLEDAERFLNEF 311 (313)
T ss_dssp HHHTSSSSSTTCCCHHHHHHHHHHC
T ss_pred HHhccCCCCCCCCCHHHHHHHHHhc
Confidence 9999999887789999999998865
No 19
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A
Probab=100.00 E-value=1.5e-43 Score=353.15 Aligned_cols=301 Identities=19% Similarity=0.227 Sum_probs=248.6
Q ss_pred ccEEEECCceeEE-EecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHH
Q 011562 82 IDVATLGNLCVDI-VLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (483)
Q Consensus 82 ~~VlviG~~~iD~-~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i 160 (483)
|.++|.+|+++|+ ++.++++ .+++..+. ......+||++.|+|++|++||.++.++|.+|+| +|+++
T Consensus 3 mi~tvt~np~iD~~~~~v~~~-~~g~~~~~----------~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~d-~g~~i 70 (320)
T 3ie7_A 3 LIYTITLNPAIDRLLFIRGEL-EKRKTNRV----------IKTEFDCGGKGLHVSGVLSKFGIKNEALGIAGSD-NLDKL 70 (320)
T ss_dssp CEEEEESSCEEEEEEEESSSC-CTTSCCCC----------SEEEEEEESHHHHHHHHHHHHTCCEEEEEEEEST-THHHH
T ss_pred eEEEEecchHHeeeEEEcCCc-cCCCeeEe----------ceeeecCCchHHHHHHHHHHcCCCeEEEEEecCc-hHHHH
Confidence 5678889999999 9999998 55654432 1345667888999999999999999999999999 99999
Q ss_pred HHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCC--cccccccCCCCChhhhhhhhccHHHHHhhcCCcEEE
Q 011562 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQR--HGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLF 238 (483)
Q Consensus 161 ~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~ 238 (483)
++.|++.||+++++...++ +|+.++++++ +|+ +.++...+. ....+.+..+.+.+.+.+.+++++|
T Consensus 71 ~~~l~~~gv~~~~v~~~~~---------~t~~~~~~~~-~g~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~v~ 138 (320)
T 3ie7_A 71 YAILKEKHINHDFLVEAGT---------STRECFVVLS-DDTNGSTMIPEAGF--TVSQTNKDNLLKQIAKKVKKEDMVV 138 (320)
T ss_dssp HHHHHHTTCCBCCEEETTC---------CCEEEEEEEE-TTCSCCEEEECCCC--CCCHHHHHHHHHHHHHHCCTTCEEE
T ss_pred HHHHHHcCCceEEEEecCC---------CCceEEEEEE-CCCceeEEEeCCCC--CCCHHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999843332 3888888888 666 665543332 1122223333344556788999999
Q ss_pred EecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc-CCCEEEcCHHHHHHhhCCCC--HH
Q 011562 239 CNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS-TSDVLLLTSDEAESLTGLRN--PI 315 (483)
Q Consensus 239 isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~-~~dil~~N~~Ea~~l~g~~~--~~ 315 (483)
++|+.+...+.+.+.++++.++++|+++++||++ +.+.+.+. ++|++++|++|++.++|... ..
T Consensus 139 ~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~-------------~~l~~~l~~~~dil~~N~~E~~~l~g~~~~~~~ 205 (320)
T 3ie7_A 139 IAGSPPPHYTLSDFKELLRTVKATGAFLGCDNSG-------------EYLNLAVEMGVDFIKPNEDEVIAILDEKTNSLE 205 (320)
T ss_dssp EESCCCTTCCHHHHHHHHHHHHHHTCEEEEECCH-------------HHHHHHHHHCCSEECCBTTGGGGGSCTTCCCHH
T ss_pred EeCCCCCCCCHHHHHHHHHHHHhcCCEEEEECCh-------------HHHHHHHhcCCeEEeeCHHHHHHHhCCCcCCCH
Confidence 9999877778899999999999999999999952 23445554 99999999999999998763 34
Q ss_pred HHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 011562 316 TAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAA 395 (483)
Q Consensus 316 ~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~ 395 (483)
+.+.++.+. ++.||||+|++|++++++++.+++|+++++++||+||||+|+|||+++|++|+++++|+++|+++|++
T Consensus 206 ~~~~~~~~~---~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~~~~l~~g~~~~~a~~~A~a~aa~ 282 (320)
T 3ie7_A 206 ENIRTLAEK---IPYLVVSLGAKGSICAHNGKLYQVIPPKVQERNDTGAGDVFVGAFIAGLAMNMPITETLKVATGCSAS 282 (320)
T ss_dssp HHHHHHTTT---CSEEEEECGGGCEEEEETTEEEEEECCCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh---CCEEEEEcCCCceEEEeCCcEEEEeCCccCCCCCcCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 555556554 38899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCCCCHHHHHHHHHhcCCCcc
Q 011562 396 TAMGCGAGRNVATLERVIELMRASNLNED 424 (483)
Q Consensus 396 ~v~~~G~~~~~p~~~ev~~~l~~~~~~~~ 424 (483)
++++.|+ ..|+++|++++++++++++-
T Consensus 283 ~v~~~G~--~~~~~~ev~~~~~~~~i~~~ 309 (320)
T 3ie7_A 283 KVMQQDS--SSFDLEAAGKLKNQVSIIQL 309 (320)
T ss_dssp HHTSSSS--SCCCHHHHHHHGGGCEEEEC
T ss_pred HHhCcCC--CCCCHHHHHHHhhCeEEEEc
Confidence 9999994 59999999999999887654
No 20
>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1
Probab=100.00 E-value=4.5e-44 Score=358.76 Aligned_cols=297 Identities=25% Similarity=0.335 Sum_probs=243.9
Q ss_pred CCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHH
Q 011562 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (483)
Q Consensus 80 ~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~ 159 (483)
++++|+|+|++++|++..++++|.+++..+. ......+||++.|+|++|++||.++.++|.+|+|.+|++
T Consensus 23 ~~~~vlviG~~~iD~~~~~~~~p~~g~~~~~----------~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~ 92 (331)
T 2fv7_A 23 EVAAVVVVGSCMTDLVSLTSRLPKTGETIHG----------HKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGND 92 (331)
T ss_dssp -CCSEEEECCCEEEEEEECSSCCCTTCCCCC----------SEEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHH
T ss_pred ccCCEEEECcccEEEEEecCCCCCCCceEec----------CceEECcCCHHHHHHHHHHHCCCCeEEEEEECCChhHHH
Confidence 3568999999999999999999887754321 123456788899999999999999999999999999999
Q ss_pred HHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEE
Q 011562 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (483)
Q Consensus 160 i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~i 239 (483)
+++.|+++||+++++.+.++. +|+.++++++++|++.++...........+.+ +...+.+..++++++
T Consensus 93 l~~~L~~~Gv~~~~v~~~~~~--------~T~~~~v~~~~~g~~~~~~~~ga~~~l~~~~~----~~~~~~l~~~~~v~~ 160 (331)
T 2fv7_A 93 YIENLKQNDISTEFTYQTKDA--------ATGTASIIVNNEGQNIIVIVAGANLLLNTEDL----RAAANVISRAKVMVC 160 (331)
T ss_dssp HHHHHHTTTEECTTEEEESSS--------CCEEEEEEECTTSCEEEEEECGGGGGCCHHHH----HHTHHHHHHCSEEEE
T ss_pred HHHHHHHcCCcceeeEecCCC--------CCceEEEEECCCCCeEEEecCCccccCCHHHH----HHHHHhhccCCEEEE
Confidence 999999999999998765543 48999999998888876543322111111111 111234678999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC-----CH
Q 011562 240 NGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NP 314 (483)
Q Consensus 240 sG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~-----~~ 314 (483)
++ ..+.+.+..+++.+++.++++++||+++...+ ...+++++|++++|++|++.|+|.. ++
T Consensus 161 ~~----~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~----------~~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~ 226 (331)
T 2fv7_A 161 QL----EITPATSLEALTMARRSGVKTLFNPAPAIADL----------DPQFYTLSDVFCCNESEAEILTGLTVGSAADA 226 (331)
T ss_dssp CS----SSCHHHHHHHHHHHHHTTCEEEECCCSCCTTC----------CTHHHHTCSEEEEEHHHHHHHHSSCCCSHHHH
T ss_pred ec----CCCHHHHHHHHHHHHHcCCEEEEeCCcccccc----------hHHHHhcCCEEEeCHHHHHHHhCCCCCChhHH
Confidence 84 45668888999999999999999998763222 1267889999999999999999863 46
Q ss_pred HHHHHHHHHcCCCccEEEEEeCCCcEEEEECC--eeEEecCccccccCCCCchHHHHHHHHHHHHcC--CCHHHHHHHHH
Q 011562 315 ITAGQELLRKGLRTKWVVVKMGPRGSILVTKS--SISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHN--MPTVNTLTIAN 390 (483)
Q Consensus 315 ~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~--~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g--~~l~~al~~A~ 390 (483)
.+++++|++.|+ +.||||+|++|+++++++ +.+++|+++++++||+||||+|+|||+++|++| +++++|+++|+
T Consensus 227 ~~~~~~l~~~g~--~~VvvT~G~~G~~~~~~~~~~~~~~~~~~v~vvdttGAGDaf~a~~~~~l~~g~~~~~~~a~~~A~ 304 (331)
T 2fv7_A 227 GEAALVLLKRGC--QVVIITLGAEGCVVLSQTEPEPKHIPTEKVKAVDTTGAGDSFVGALAFYLAYYPNLSLEDMLNRSN 304 (331)
T ss_dssp HHHHHHHHTTTC--SEEEEECGGGCEEEEESSCCSCEEECCCCCCCSCCTTHHHHHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CEEEEEECCCceEEEECCCCceeEecCCCCccCCCCCchHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 678888888876 789999999999999887 788999999999999999999999999999999 99999999999
Q ss_pred HHHHHHhcccCCCCCCCCHHHHHH
Q 011562 391 AVGAATAMGCGAGRNVATLERVIE 414 (483)
Q Consensus 391 aaAa~~v~~~G~~~~~p~~~ev~~ 414 (483)
++|+.++++.|+...+|+++|+++
T Consensus 305 ~~aa~~v~~~G~~~~~p~~~ev~~ 328 (331)
T 2fv7_A 305 FIAAVSVQAAGTQSSYPYKKDLPL 328 (331)
T ss_dssp HHHHHHHTSSSGGGGCCCGGGSCG
T ss_pred HHHHHHhCCCCCccCCCCHHHHhh
Confidence 999999999998777899888754
No 21
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Probab=100.00 E-value=1.2e-43 Score=355.61 Aligned_cols=300 Identities=17% Similarity=0.211 Sum_probs=243.0
Q ss_pred CCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHH
Q 011562 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (483)
Q Consensus 80 ~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~ 159 (483)
.+|.++|+|++++|+++.++++ ..++..+. ......+||++.|+|+++++||.++.++|.+|+ .+|++
T Consensus 19 ~~Mi~~v~G~~~~D~~~~~~~~-~~g~~~~~----------~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~-~~G~~ 86 (330)
T 2jg1_A 19 SHMILTLTLNPSVDISYPLTAL-KLDDVNRV----------QEVSKTAGGKGLNVTRVLAQVGEPVLASGFIGG-ELGQF 86 (330)
T ss_dssp SCCEEEEESSCEEEEEEEESCC-CTTSEEEE----------SCCEEEEECHHHHHHHHHHHHTCCEEEEEEEEH-HHHHH
T ss_pred CcEEEEEecchhheEEEecCCc-cCCceEEe----------ceEEEcCCchHHHHHHHHHHhCCCeEEEEEecc-hhHHH
Confidence 3467889999999999999987 55544322 134566788899999999999999999999996 59999
Q ss_pred HHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEE
Q 011562 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (483)
Q Consensus 160 i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~i 239 (483)
+++.|+++||+++++...++ |+.++++++++ ++.++...... ...+..+.+...+...+++++++|+
T Consensus 87 l~~~L~~~gV~~~~v~~~~~----------t~~~~~~v~~~-~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~v~~ 153 (330)
T 2jg1_A 87 IAKKLDHADIKHAFYNIKGE----------TRNCIAILHEG-QQTEILEQGPE--IDNQEAAGFIKHFEQMMEKVEAVAI 153 (330)
T ss_dssp HHHHHHHTTCEECCEEESSC----------CEEEEEEEETT-EEEEEEECCCB--CCHHHHHHHHHHHHHHGGGCSEEEE
T ss_pred HHHHHHHCCCceeEEEccCC----------CeeEEEEEeCC-CcEEEECCCCC--CCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 99999999999999876432 66667777765 55443332211 1112222222233345789999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc---CCCEEEcCHHHHHHhhCCC----
Q 011562 240 NGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS---TSDVLLLTSDEAESLTGLR---- 312 (483)
Q Consensus 240 sG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~---~~dil~~N~~Ea~~l~g~~---- 312 (483)
+|+.+...+.+.+.++++.++++|+++++||++ +.+.++++ ++|++++|++|++.++|..
T Consensus 154 ~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~-------------~~l~~~l~~~~~~dil~~N~~E~~~l~g~~~~~~ 220 (330)
T 2jg1_A 154 SGSLPKGLNQDYYAQIIERCQNKGVPVILDCSG-------------ATLQTVLENPYKPTVIKPNISELYQLLNQPLDES 220 (330)
T ss_dssp ESCCCBTSCTTHHHHHHHHHHTTTCCEEEECCH-------------HHHHHHHTSSSCCSEECCBHHHHHHHTTSCCCCC
T ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCc-------------HHHHHHHhccCCceEEEeCHHHHHHHhCCCCCCC
Confidence 998766666788999999999999999999962 13456666 8999999999999999873
Q ss_pred --CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHH
Q 011562 313 --NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIAN 390 (483)
Q Consensus 313 --~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~ 390 (483)
+..++++.|++.|+ +.||||+|++|++++++++.+++|+++++++|||||||+|+|||+++|++|+++++|+++|+
T Consensus 221 ~~~~~~~~~~l~~~g~--~~VvvT~G~~Ga~~~~~~~~~~~~~~~v~vvDttGAGDaF~ag~~~~l~~g~~l~~al~~A~ 298 (330)
T 2jg1_A 221 LESLKQAVSQPLFEGI--EWIIVSLGAQGAFAKHNHTFYRVNIPTISVLNPVGSGDSTVAGITSAILNHENDHDLLKKAN 298 (330)
T ss_dssp HHHHHHHHHSGGGTTC--SEEEEECGGGCEEEEETTEEEEEECCCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CEEEEeecCCceEEEeCCCEEEEeCCCccccCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 35567777887766 78999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCCCCHHHHHHHHHhcCC
Q 011562 391 AVGAATAMGCGAGRNVATLERVIELMRASNL 421 (483)
Q Consensus 391 aaAa~~v~~~G~~~~~p~~~ev~~~l~~~~~ 421 (483)
++|++++++.|+. .|+++|++++++++.+
T Consensus 299 a~aa~~v~~~G~~--~~~~~ev~~~~~~i~~ 327 (330)
T 2jg1_A 299 TLGMLNAQEAQTG--YVNLNNYDDLFNQIEV 327 (330)
T ss_dssp HHHHHHHTSSSSS--CCCGGGHHHHHTTCEE
T ss_pred HHHHHHhcCcCCC--CCCHHHHHHHHhceEE
Confidence 9999999999974 7999999999987655
No 22
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*
Probab=100.00 E-value=1.7e-43 Score=351.37 Aligned_cols=302 Identities=20% Similarity=0.281 Sum_probs=241.9
Q ss_pred ccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHH
Q 011562 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (483)
Q Consensus 82 ~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~ 161 (483)
++|+|+|++++|++.. .++...+. ......+||++.|+|+++++||.++.++|.+|+|.+|++++
T Consensus 2 ~~v~viG~~~~D~~~~-----~~~~~~~~----------~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~D~~g~~i~ 66 (311)
T 2dcn_A 2 AKLITLGEILIEFNAL-----SPGPLRHV----------SYFEKHVAGSEANYCVAFIKQGNECGIIAKVGDDEFGYNAI 66 (311)
T ss_dssp CEEEEESCCEEEEEES-----SSSCGGGC----------CEEEEEEECHHHHHHHHHHHTTCEEEEECEEESSHHHHHHH
T ss_pred CCEEEECCceEEEecC-----CCCccccc----------ceeeecCCChHHHHHHHHHHCCCceEEEEEeCCCHHHHHHH
Confidence 5799999999999973 22222110 13345678889999999999999999999999999999999
Q ss_pred HHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCC--cccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEE
Q 011562 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQR--HGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (483)
Q Consensus 162 ~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~i 239 (483)
+.|+++||+++++.+.++. +|+.+++.++++|+ +.+............. .+.+.. ..+++++++|+
T Consensus 67 ~~l~~~gv~~~~v~~~~~~--------~t~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~~~~~---~~~~~~~~v~~ 134 (311)
T 2dcn_A 67 EWLRGQGVDVSHMKIDPSA--------PTGIFFIQRHYPVPLKSESIYYRKGSAGSKLS-PEDVDE---EYVKSADLVHS 134 (311)
T ss_dssp HHHHHTTCBCTTCEEETTS--------CCCEEEEEESCSSTTCEEEEEECTTCTGGGCC-GGGCCH---HHHTTCSEEEE
T ss_pred HHHHHcCCCcceEEEcCCC--------CceEEEEEECCCCCccceEEEecCcChhhhCC-hhhcCh---HHHcCCCEEEE
Confidence 9999999999998765543 38888898888887 6654221110000100 011222 34678999999
Q ss_pred ecCCC--CCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc--CCCEEEcCHHHHHHhhCCCCHH
Q 011562 240 NGYGF--DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS--TSDVLLLTSDEAESLTGLRNPI 315 (483)
Q Consensus 240 sG~~~--~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~--~~dil~~N~~Ea~~l~g~~~~~ 315 (483)
+|+.+ .+.+.+.+.++++.+++. ++||+.+... |. ....++.+.++++ ++|++++|++|++.++|..++.
T Consensus 135 ~g~~~~~~~~~~~~~~~~~~~a~~~----~~D~~~~~~~-~~-~~~~~~~~~~~l~~~~~dil~~N~~E~~~l~g~~~~~ 208 (311)
T 2dcn_A 135 SGITLAISSTAKEAVYKAFEIASNR----SFDTNIRLKL-WS-AEEAKREILKLLSKFHLKFLITDTDDSKIILGESDPD 208 (311)
T ss_dssp EHHHHHSCHHHHHHHHHHHHHCSSE----EEECCCCTTT-SC-HHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHSCCCHH
T ss_pred eCcccccChHHHHHHHHHHHHHHHh----CcCccCchhh-CC-hHHHHHHHHHHHhhcCCcEEECCHHHHHHHhCCCCHH
Confidence 98864 233456677777776554 8999887643 32 2334567788999 9999999999999999998999
Q ss_pred HHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 011562 316 TAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAA 395 (483)
Q Consensus 316 ~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~ 395 (483)
+++++|++. + +.||||+|++|++++++++.+++|+++++++|||||||+|+|||+++|++|+++++|+++|+++|+.
T Consensus 209 ~~~~~l~~~-~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~a~~~aa~ 285 (311)
T 2dcn_A 209 KAAKAFSDY-A--EIIVMKLGPKGAIVYYDGKKYYSSGYQVPVEDVTGAGDALGGTFLSLYYKGFEMEKALDYAIVASTL 285 (311)
T ss_dssp HHHHHHTTT-E--EEEEEEEETTEEEEEETTEEEEEECCCCCCSCCTTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-C--CEEEEEECCCCcEEEeCCcEEEeCCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999998876 4 8899999999999999888899999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCCCCHHHHHHHHHhc
Q 011562 396 TAMGCGAGRNVATLERVIELMRAS 419 (483)
Q Consensus 396 ~v~~~G~~~~~p~~~ev~~~l~~~ 419 (483)
++++.|+...+|++++++++++++
T Consensus 286 ~v~~~G~~~~~~~~~~v~~~~~~~ 309 (311)
T 2dcn_A 286 NVMIRGDQENLPTTKDIETFLREM 309 (311)
T ss_dssp HTTSSSSSTTCCCHHHHHHHHHHC
T ss_pred HhccCCCCCCCCCHHHHHHHHHhc
Confidence 999999887789999999998865
No 23
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A*
Probab=100.00 E-value=1.8e-44 Score=362.70 Aligned_cols=302 Identities=23% Similarity=0.327 Sum_probs=240.5
Q ss_pred CccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHH
Q 011562 81 SIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (483)
Q Consensus 81 ~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i 160 (483)
|.+|+|+|++++|++... . ......+||+++|+|+++++||.++.++|.+|+|.+|+++
T Consensus 24 m~~ilviG~~~~D~~~~~------~---------------~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~G~~i 82 (339)
T 1tyy_A 24 MNKVWVIGDASVDLVPEK------Q---------------NSYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGRFL 82 (339)
T ss_dssp -CCEEEESCCEEEEEECS------S---------------SEEEEEEECHHHHHHHHHHHTTCCEEEEEEECSSHHHHHH
T ss_pred cCCEEEECcceeEEeccC------C---------------CceEEcCCCHHHHHHHHHHHcCCCeEEEEeeCCCHHHHHH
Confidence 458999999999999762 0 0223456888999999999999999999999999999999
Q ss_pred HHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEe
Q 011562 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCN 240 (483)
Q Consensus 161 ~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~is 240 (483)
++.|+++||+++++.+.++. +|+.+++.++++|++.+....... .... +..+....+.++++||++
T Consensus 83 ~~~L~~~gVd~~~v~~~~~~--------~T~~~~v~~~~~g~r~~~~~~~~~---a~~~---l~~~~~~~l~~~~~v~~~ 148 (339)
T 1tyy_A 83 RQVFQDNGVDVTFLRLDADL--------TSAVLIVNLTADGERSFTYLVHPG---ADTY---VSPQDLPPFRQYEWFYFS 148 (339)
T ss_dssp HHHHHTTTEECTTEEECTTS--------CCCEEEEC-------CEEECCSSC---GGGG---CCGGGCCCCCTTCEEEEE
T ss_pred HHHHHHcCCCchheEecCCC--------CCeEEEEEEcCCCCeEEEEecCCC---hhhh---CCcchhhHhccCCEEEEc
Confidence 99999999999999875543 388888888877877653321100 0001 111122346789999999
Q ss_pred cCCC-CCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHHHHHH
Q 011562 241 GYGF-DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQ 319 (483)
Q Consensus 241 G~~~-~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~ 319 (483)
|+.+ .+.+.+.+.++++.++++|+++++||+.+.. +|.......+.+.++++++|++++|++|++.|+|..++.++++
T Consensus 149 ~~~l~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~-~~~~~~~~~~~~~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~ 227 (339)
T 1tyy_A 149 SIGLTDRPAREACLEGARRMREAGGYVLFDVNLRSK-MWGNTDEIPELIARSAALASICKVSADELCQLSGASHWQDARY 227 (339)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHTTCEEEEECCCCGG-GCSCGGGHHHHHHHHHHHCSEEEEEHHHHHHHHCCSSGGGGSS
T ss_pred chhhcCcccHHHHHHHHHHHHHcCCEEEEeCCCCcc-ccCCHHHHHHHHHHHHhhCCEEecCHHHHHHHhCCCCHHHHHH
Confidence 8743 3344578889999999999999999987754 3433344566778899999999999999999999888888888
Q ss_pred HHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHH
Q 011562 320 ELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHN-----MPTVNTLTIANAVGA 394 (483)
Q Consensus 320 ~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g-----~~l~~al~~A~aaAa 394 (483)
+|++.|+ +.||||+|++|++++++++.+++|+++++++|||||||+|+|||+++|++| +++++|+++|+++|+
T Consensus 228 ~l~~~g~--~~VvvT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~ag~~~~l~~g~~~~~~~l~~a~~~A~a~aa 305 (339)
T 1tyy_A 228 YLRDLGC--DTTIISLGADGALLITAEGEFHFPAPRVDVVDTTGAGDAFVGGLLFTLSRANCWDHALLAEAISNANACGA 305 (339)
T ss_dssp TTGGGTC--SCEEEECGGGCEEEESSSCEEEECCCCCCCSCCTTHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCC--CEEEEEECCCceEEEeCCceEEcCCCCCCcCCCCCchHHHHHHHHHHHHhccccccccHHHHHHHHHHHHH
Confidence 8887776 779999999999999888889999999999999999999999999999997 899999999999999
Q ss_pred HHhcccCCCCCCCCHHHHHHHHHhcC
Q 011562 395 ATAMGCGAGRNVATLERVIELMRASN 420 (483)
Q Consensus 395 ~~v~~~G~~~~~p~~~ev~~~l~~~~ 420 (483)
.++++.|+..++|+++++++++++.+
T Consensus 306 ~~v~~~G~~~~~p~~~ev~~~l~~~~ 331 (339)
T 1tyy_A 306 MAVTAKGAMTALPFPDQLNTFLSSHS 331 (339)
T ss_dssp HGGGSSSTTTTCCCHHHHHHHHC---
T ss_pred HHhCCCCCCCCCCCHHHHHHHHhcCc
Confidence 99999998778999999999987654
No 24
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=4.9e-43 Score=348.15 Aligned_cols=291 Identities=22% Similarity=0.334 Sum_probs=238.8
Q ss_pred CccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCc-eEEEEEecCChhhHH
Q 011562 81 SIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLD-CVTIGHVGNEIYGRF 159 (483)
Q Consensus 81 ~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~-v~lig~vG~D~~g~~ 159 (483)
-.+|+|+|++++|+++.++++|.+++..+. ......+||++.|+|+++++||.+ +.++|.+|+|.+|++
T Consensus 14 ~~~v~vvG~~~iD~~~~~~~~p~~g~~~~~----------~~~~~~~GG~~~NvA~~la~LG~~~~~~i~~vG~D~~G~~ 83 (311)
T 1vm7_A 14 FLVISVVGSSNIDIVLKVDHFTKPGETQKA----------IEMNVFPGGKGANQAVTVAKIGEKGCRFVTCIGNDDYSDL 83 (311)
T ss_dssp CCCEEEECCCEEEEEEECSSCCCTTCEEEC----------SEEEEEEECHHHHHHHHHHHHHSSCEEEEEEECSSHHHHH
T ss_pred cCCEEEECcceeeEEEecccCCCCCceEec----------CeeeecCCCHHHHHHHHHHHcCCCceEEEEEECCChHHHH
Confidence 467999999999999999999887764421 134556788899999999999999 999999999999999
Q ss_pred HHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEE
Q 011562 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (483)
Q Consensus 160 i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~i 239 (483)
+++.|+++|| ++.+.++. +|+.++++++++|++.++...........+ .+. .+.++.++++++
T Consensus 84 l~~~L~~~gV---~v~~~~~~--------~T~~~~~~~~~~g~~~~~~~~ga~~~l~~~---~~~---~~~~~~~~~v~~ 146 (311)
T 1vm7_A 84 LIENYEKLGI---TGYIRVSL--------PTGRAFIEVDKTGQNRIIIFPGANAELKKE---LID---WNTLSESDILLL 146 (311)
T ss_dssp HHHHHHHTTE---EEEEECSS--------CCCEEEEEECTTSCEEEEEECGGGGGCCGG---GCC---HHHHTTCSEEEE
T ss_pred HHHHHHHCCC---EEEEcCCC--------CCeEEEEEECCCCCEEEEEecCccccCCHH---HhC---hhhcccCCEEEE
Confidence 9999999999 55543332 488999999988888765433221111111 111 334688999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCC-----CCH
Q 011562 240 NGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL-----RNP 314 (483)
Q Consensus 240 sG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~-----~~~ 314 (483)
++ ..+.+.+.. .+++.++++++||++... .+..+++++|++++|++|++.|+|. .++
T Consensus 147 ~~----~~~~~~~~~---~a~~~~~~v~~Dp~~~~~-----------~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~ 208 (311)
T 1vm7_A 147 QN----EIPFETTLE---CAKRFNGIVIFDPAPAQG-----------INEEIFQYLDYLTPNEKEIEALSKDFFGEFLTV 208 (311)
T ss_dssp CS----SSCHHHHHH---HHHHCCSEEEECCCSCTT-----------CCGGGGGGCSEECCBHHHHHHHHHHHHSCCCCH
T ss_pred eC----CCCHHHHHH---HHHHcCCEEEEeCcchhh-----------hhHHHHhhCCEEeCCHHHHHHHhCCCCCChhHH
Confidence 85 334444433 378899999999986422 1236889999999999999999875 578
Q ss_pred HHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011562 315 ITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGA 394 (483)
Q Consensus 315 ~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa 394 (483)
.++++.|++.|+ +.||||+|++|++++++++.+++|+++++++||+||||+|+|||+++|++|+++++|+++|+++|+
T Consensus 209 ~~~~~~l~~~g~--~~vvvT~G~~G~~~~~~~~~~~~~~~~v~~vdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~aa 286 (311)
T 1vm7_A 209 EKAAEKFLELGV--KNVIVKLGDKGVLLVNKNEKKHFPTFKVKAVDTTAAGDVFNGAFAVALSEGKNPEEAVIFGTAAAA 286 (311)
T ss_dssp HHHHHHHHHTTC--SEEEEECGGGCEEEEETTEEEEECCCCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CEEEEEECCCCeEEEeCCceEEecCCCcccCCCCccHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 889999999876 789999999999999988888999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCCCCHHHHHHHHHh
Q 011562 395 ATAMGCGAGRNVATLERVIELMRA 418 (483)
Q Consensus 395 ~~v~~~G~~~~~p~~~ev~~~l~~ 418 (483)
.++++.|+...+|+++|+++++++
T Consensus 287 ~~v~~~G~~~~~p~~~ev~~~l~~ 310 (311)
T 1vm7_A 287 ISVTRLGAQSSIPAREEVEAFLKN 310 (311)
T ss_dssp HHTTSSSSGGGCCCHHHHHHHHHT
T ss_pred HHhCcCCccccCCCHHHHHHHHhc
Confidence 999999987779999999998864
No 25
>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A*
Probab=100.00 E-value=8.8e-43 Score=345.86 Aligned_cols=295 Identities=22% Similarity=0.242 Sum_probs=241.8
Q ss_pred EEEE-CCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHH
Q 011562 84 VATL-GNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (483)
Q Consensus 84 Vlvi-G~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~ 162 (483)
|+++ +|+++|+++.++++ .+++..+. ......+||++.|+|+++++||.++.++|.+|+| +|+++++
T Consensus 4 i~~v~~n~~~D~~~~v~~~-~~g~~~~~----------~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~d-~g~~i~~ 71 (309)
T 3umo_A 4 IYTLTLAPSLDSATITPQI-YPEGKLRC----------TAPVFEPGGGGINVARAIAHLGGSATAIFPAGGA-TGEHLVS 71 (309)
T ss_dssp EEEECSSCEEEEEEEESCC-CSSSEEEC----------CCCEEEEESHHHHHHHHHHHTTCCEEEEEEECHH-HHHHHHH
T ss_pred EEEEecchhheEEEEcCcc-cCCCeEEe----------ceeeecCCchHHHHHHHHHHcCCCeEEEEEecCc-hHHHHHH
Confidence 5555 79999999999999 56665432 2456777899999999999999999999999999 9999999
Q ss_pred HHHHcCCCccceeecCCCCccccCcccceeEEEEE-CCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEec
Q 011562 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLV-DPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNG 241 (483)
Q Consensus 163 ~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~v-d~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG 241 (483)
.|+++||+++++...+. |+.+++++ +++|++.++...+.. ...+.++.+.+. .+.+..++++|++|
T Consensus 72 ~l~~~gv~~~~v~~~~~----------t~~~~~~~~~~~g~~~~~~~~g~~--~~~~~~~~~~~~-~~~~~~~~~~~~~g 138 (309)
T 3umo_A 72 LLADENVPVATVEAKDW----------TRQNLHVHVEASGEQYRFVMPGAA--LNEDEFRQLEEQ-VLEIESGAILVISG 138 (309)
T ss_dssp HHHHTTCCEEEEECSSC----------CCCCEEEEETTTCCEEEEECCCCC--CCHHHHHHHHHH-HTTSCTTCEEEEES
T ss_pred HHHHcCCceEEEEecCC----------CeeEEEEEECCCCcEEEEEcCCCC--CCHHHHHHHHHH-HHhcCCCCEEEEEc
Confidence 99999999999866432 33333434 446777765544322 111111222111 12246788999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcC--CCEEEcCHHHHHHhhCCC-----CH
Q 011562 242 YGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLST--SDVLLLTSDEAESLTGLR-----NP 314 (483)
Q Consensus 242 ~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~--~dil~~N~~Ea~~l~g~~-----~~ 314 (483)
+.+...+.+.+.++++.++++|+++++||+. +.+.++++. +|++++|++|++.++|.. +.
T Consensus 139 ~~~~~~~~~~~~~~~~~a~~~~~~v~~D~~~-------------~~l~~~l~~~~~dil~~N~~E~~~l~g~~~~~~~~~ 205 (309)
T 3umo_A 139 SLPPGVKLEKLTQLISAAQKQGIRCIVDSSG-------------EALSAALAIGNIELVKPNQKELSALVNRELTQPDDV 205 (309)
T ss_dssp CCCTTCCHHHHHHHHHHHHHTTCEEEEECCH-------------HHHHHHTSSCCBSEECCBHHHHHHHHTSCCCSTTHH
T ss_pred cCCCCCCHHHHHHHHHHHHhcCCEEEEECCc-------------HHHHHHhccCCCeEEEeCHHHHHHHhCCCCCCHHHH
Confidence 9877788899999999999999999999952 345677887 499999999999999864 57
Q ss_pred HHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011562 315 ITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGA 394 (483)
Q Consensus 315 ~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa 394 (483)
.++++.|+++|. .+.||||+|++|++++++++.+++|+++++++||+||||+|+|||+++|++|+++++|+++|+++|+
T Consensus 206 ~~~~~~l~~~g~-~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGD~f~a~~~~~l~~g~~~~~a~~~A~~~aa 284 (309)
T 3umo_A 206 RKAAQEIVNSGK-AKRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENASLEEMVRFGVAAGS 284 (309)
T ss_dssp HHHHHHHHHTTS-BSCEEEECGGGCEEEECSSCEEEECCCSCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CcEEEEEcCcccEEEEECCcEEEEeCCCcCCCCCcChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 788899999874 2579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCCCCHHHHHHHHHhc
Q 011562 395 ATAMGCGAGRNVATLERVIELMRAS 419 (483)
Q Consensus 395 ~~v~~~G~~~~~p~~~ev~~~l~~~ 419 (483)
+++++.|+. .|+++||+++++++
T Consensus 285 ~~v~~~G~~--~~~~~ev~~~l~~~ 307 (309)
T 3umo_A 285 AATLNQGTR--LCSHDDTQKIYAYL 307 (309)
T ss_dssp HHTTSSTTC--CCCHHHHHHHHHHH
T ss_pred HHhcCCCCC--CCCHHHHHHHHHHh
Confidence 999999974 89999999999875
No 26
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Probab=100.00 E-value=2.8e-43 Score=351.76 Aligned_cols=299 Identities=19% Similarity=0.227 Sum_probs=242.2
Q ss_pred ccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHH
Q 011562 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (483)
Q Consensus 82 ~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~ 161 (483)
|+++|+|++++|+++.+++ |..++..+. ......+||++.|+|+++++||.++.++|.+|+ .+|++++
T Consensus 3 m~i~v~g~~~~D~~~~v~~-~~~g~~~~~----------~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~-~~G~~i~ 70 (323)
T 2f02_A 3 LIVTVTMNPSIDISYLLDH-LKLDTVNRT----------SQVTKTPGGKGLNVTRVIHDLGGDVIATGVLGG-FHGAFIA 70 (323)
T ss_dssp CEEEEESSCEEEEEEECSC-CCTTSEEEE----------SCEEEEEESHHHHHHHHHHHHTCCEEEEEEEEH-HHHHHHH
T ss_pred eEEEEecCceeEEEEecCC-cccCCEEEe----------ceEEEcCCcHHHHHHHHHHHcCCCeEEEEEecc-chHHHHH
Confidence 6899999999999999998 566654432 134556788899999999999999999999997 4999999
Q ss_pred HHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEec
Q 011562 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNG 241 (483)
Q Consensus 162 ~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG 241 (483)
+.|++.||+++++...++ |+.++++++++ ++.++...... ...+.++.+.+.+...+..+|+++++|
T Consensus 71 ~~L~~~gV~~~~v~~~~~----------t~~~~~~~~~~-~~~~~~~~g~~--l~~~~~~~~~~~~~~~~~~~~~v~~~g 137 (323)
T 2f02_A 71 NELKKANIPQAFTSIKEE----------TRDSIAILHEG-NQTEILEAGPT--VSPEEISNFLENFDQLIKQAEIVTISG 137 (323)
T ss_dssp HHHHHTTCCBCCEEESSC----------CEEEEEEEETT-EEEEEEECCCB--CCHHHHHHHHHHHHHHHTTCSEEEEES
T ss_pred HHHHHCCCceeEEEcCCC----------CeeEEEEEcCC-CeEEEECCCCC--CCHHHHHHHHHHHHHhccCCCEEEEEC
Confidence 999999999999876432 56666777765 55544332211 122222222223334568999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhh---cCCCEEEcCHHHHHHhhCCC------
Q 011562 242 YGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFL---STSDVLLLTSDEAESLTGLR------ 312 (483)
Q Consensus 242 ~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll---~~~dil~~N~~Ea~~l~g~~------ 312 (483)
+.+...+.+.+.++++.++++|+++++||++. .+.+++ +++|++++|++|++.|+|..
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~-------------~~~~~l~~~~~~dil~~N~~E~~~l~g~~~~~~~~ 204 (323)
T 2f02_A 138 SLAKGLPSDFYQELVQKAHAQEVKVLLDTSGD-------------SLRQVLQGPWKPYLIKPNLEELEGLLGQDFSENPL 204 (323)
T ss_dssp CCCBTSCTTHHHHHHHHHHHTTCEEEEECCTH-------------HHHHHHHSSCCCSEECCBHHHHHHHHTCCCCSSCH
T ss_pred CCCCCCChHHHHHHHHHHHHCCCEEEEECChH-------------HHHHHHhccCCCeEEecCHHHHHHHhCCCCCCCcH
Confidence 88765666788999999999999999999631 233455 58999999999999999864
Q ss_pred -CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 011562 313 -NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANA 391 (483)
Q Consensus 313 -~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~a 391 (483)
+..++++.|++.|+ +.||||+|++|++++++++.+++|+++++++||+||||+|+|||+++|++|+++++|+++|++
T Consensus 205 ~~~~~~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~a~~~~~l~~g~~~~~a~~~A~~ 282 (323)
T 2f02_A 205 AAVQTALTKPMFAGI--EWIVISLGKDGAIAKHHDQFYRVKIPTIQAKNPVGSGDATIAGLAYGLAKDAPAAELLKWGMA 282 (323)
T ss_dssp HHHHHHHTSGGGTTC--SEEEEECGGGCEEEEETTEEEEEECCCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC--CEEEEeecCCceEEEeCCCEEEEcCCCccccCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34456777777766 789999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCCCCHHHHHHHHHhcCCC
Q 011562 392 VGAATAMGCGAGRNVATLERVIELMRASNLN 422 (483)
Q Consensus 392 aAa~~v~~~G~~~~~p~~~ev~~~l~~~~~~ 422 (483)
+|+.++++.|+. +|+++|++++++++.++
T Consensus 283 ~aa~~v~~~G~~--~~~~~ev~~~~~~~~v~ 311 (323)
T 2f02_A 283 AGMANAQERMTG--HVDVENVKKHLMNIQVV 311 (323)
T ss_dssp HHHHHHHSSSSS--CCCHHHHHHHHTTCEEE
T ss_pred HHHHHHcCCCcC--CCCHHHHHHHhhcEEEE
Confidence 999999999974 89999999999887654
No 27
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A
Probab=100.00 E-value=5.3e-43 Score=347.51 Aligned_cols=300 Identities=25% Similarity=0.287 Sum_probs=236.4
Q ss_pred CccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHH
Q 011562 81 SIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (483)
Q Consensus 81 ~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i 160 (483)
||+|+|+|++++|++.. .++...+ .......+||++.|+|++|++||.++.++|.+|+|.+|+++
T Consensus 1 m~~i~viG~~~~D~~~~-----~~~~~~~----------~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~D~~g~~i 65 (309)
T 1v1a_A 1 MLEVVTAGEPLVALVPQ-----EPGHLRG----------KRLLEVYVGGAEVNVAVALARLGVKVGFVGRVGEDELGAMV 65 (309)
T ss_dssp CCSEEEESCCEEEEECS-----SSSCGGG----------CCEEEEEEECHHHHHHHHHHHHTCCEEEEEEECSSHHHHHH
T ss_pred CCcEEEEccceEEEecC-----CCCcccc----------hheeeeecCcHHHHHHHHHHHcCCCeEEEEEeCCCHHHHHH
Confidence 35899999999999852 2222111 01334567888999999999999999999999999999999
Q ss_pred HHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEe
Q 011562 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCN 240 (483)
Q Consensus 161 ~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~is 240 (483)
++.|+++||+++++...++ + |+.+++.++++|++.+.............. +.+. ...+++++++|++
T Consensus 66 ~~~L~~~gv~~~~v~~~~~-~--------t~~~~~~~~~~g~~~~~~~~~~~a~~~~~~-~~~~---~~~~~~~~~v~~~ 132 (309)
T 1v1a_A 66 EERLRAEGVDLTHFRRAPG-F--------TGLYLREYLPLGQGRVFYYRKGSAGSALAP-GAFD---PDYLEGVRFLHLS 132 (309)
T ss_dssp HHHHHHHTCBCTTEEECSS-C--------CCEEEEEECTTSCEEEEEECTTCSGGGCCT-TSSC---GGGGTTCSEEEEE
T ss_pred HHHHHHcCCCCceEEEcCC-C--------CEEEEEEECCCCCceEEEeCCCChhhhCCH-hhCC---hhHhcCCCEEEEe
Confidence 9999999999999976554 4 888888888878766532211110000000 1111 1346789999999
Q ss_pred cCCCC--CCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHHHHH
Q 011562 241 GYGFD--ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAG 318 (483)
Q Consensus 241 G~~~~--~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~ 318 (483)
|+.+. +.+.+.+.++++.++++|+++++||+++... |. .....+.+.++++++|++++|++|++.|+|.. .+++
T Consensus 133 g~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~-~~-~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~--~~~~ 208 (309)
T 1v1a_A 133 GITPALSPEARAFSLWAMEEAKRRGVRVSLDVNYRQTL-WS-PEEARGFLERALPGVDLLFLSEEEAELLFGRV--EEAL 208 (309)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHHTTTCEEEEECCCCTTT-SC-HHHHHHHHHHHGGGCSEEEEEHHHHHHHHSSH--HHHH
T ss_pred CchhccCchHHHHHHHHHHHHHHcCCEEEEeCCCCccc-CC-HHHHHHHHHHHHHhCCEEECcHHHHHHHhCCH--HHHH
Confidence 98753 4455788899999999999999999987643 32 23445677889999999999999999999865 4444
Q ss_pred HHHHHcCCCccEEEEEeCCCcEEEEEC-CeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 011562 319 QELLRKGLRTKWVVVKMGPRGSILVTK-SSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATA 397 (483)
Q Consensus 319 ~~l~~~g~~~~~vVvT~G~~G~~~~~~-~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v 397 (483)
+ +.|+ +.||||+|++|+++ ++ ++.+++|+++++++|||||||+|+|||+++|++|+++++|+++|+++|+.++
T Consensus 209 ~---~~g~--~~vvvt~G~~G~~~-~~~~~~~~~~~~~v~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~a~~~aa~~v 282 (309)
T 1v1a_A 209 R---ALSA--PEVVLKRGAKGAWA-FVDGRRVEGSAFAVEAVDPVGAGDAFAAGYLAGAVWGLPVEERLRLANLLGASVA 282 (309)
T ss_dssp H---HTCC--SEEEEECGGGCEEE-EETTEEEECCCCCCCCSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred H---hcCC--CEEEEEecCCCeeE-ecCCcEEEeCCCCCCcCCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4 5555 88999999999998 65 6788999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCHHHHHHHHHh
Q 011562 398 MGCGAGRNVATLERVIELMRA 418 (483)
Q Consensus 398 ~~~G~~~~~p~~~ev~~~l~~ 418 (483)
++.|+...+|+++++++++++
T Consensus 283 ~~~G~~~~~~~~~~v~~~~~~ 303 (309)
T 1v1a_A 283 ASRGDHEGAPYREDLEVLLKA 303 (309)
T ss_dssp TSSTTTTTCCCHHHHTTCC--
T ss_pred cCCCCCcCCCCHHHHHHHHhh
Confidence 999987778999999887654
No 28
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=1.4e-43 Score=355.17 Aligned_cols=303 Identities=17% Similarity=0.197 Sum_probs=244.6
Q ss_pred CCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHH
Q 011562 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (483)
Q Consensus 80 ~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~ 159 (483)
..|.++|+|++++|+++.+++ |.+++..+.+ .+......+||++.|+|++|++||.++.++|.+|+| +|++
T Consensus 11 ~~~~~~v~G~~~vD~~~~~~~-~~~g~~~~~s-------~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~d-~G~~ 81 (331)
T 2ajr_A 11 HHMVLTVTLNPALDREIFIED-FQVNRLYRIN-------DLSKTQMSPGGKGINVSIALSKLGVPSVATGFVGGY-MGKI 81 (331)
T ss_dssp -CCEEEEESSCEEEEEEECTT-CCSSCEEECC-------SGGGEEEEEESHHHHHHHHHHHTTCCEEEEEEEEHH-HHHH
T ss_pred cceEEEEecchHHeEEEEcCC-ccCCceEEec-------cccceEEecCcHHHHHHHHHHHcCCCeEEEEEecCc-hHHH
Confidence 568899999999999999998 6666654320 011345567888999999999999999999999998 9999
Q ss_pred HHHHHHHcC--CCccceeecCCCCccccCcccceeEEEEECCCCCc-ccccccCCCCChhhhhhhhccHHHHHhhcCCcE
Q 011562 160 LLDVLQDEG--IGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRH-GFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKV 236 (483)
Q Consensus 160 i~~~L~~~g--Id~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 236 (483)
+++.|+++| |+++++...++ |+.++++++++|++ .++...... ...+.+..+...+.+.+..+++
T Consensus 82 i~~~L~~~g~~V~~~~v~~~~~----------t~~~~~~v~~~g~~~~~~~~~g~~--l~~~~~~~~~~~~~~~~~~~~~ 149 (331)
T 2ajr_A 82 LVEELRKISKLITTNFVYVEGE----------TRENIEIIDEKNKTITAINFPGPD--VTDMDVNHFLRRYKMTLSKVDC 149 (331)
T ss_dssp HHHHHHHHCTTEEEEEEEESSC----------CEEEEEEEETTTTEEEEEECCCCC--CCHHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHcCCccceEEEEcCCC----------CeEEEEEEeCCCceEEEEeCCCCC--CCHHHHHHHHHHHHHhcccCCE
Confidence 999999999 99999876432 66777788877777 544333221 1222222222223456789999
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc---CCCEEEcCHHH-HHHhhCCC
Q 011562 237 LFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS---TSDVLLLTSDE-AESLTGLR 312 (483)
Q Consensus 237 v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~---~~dil~~N~~E-a~~l~g~~ 312 (483)
+|++|+.+...+.+.+.++++.++++|+++++||++ +.+.++++ ++|++++|++| ++.++|..
T Consensus 150 v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~-------------~~~~~~l~~~~~~dil~~N~~E~~~~l~g~~ 216 (331)
T 2ajr_A 150 VVISGSIPPGVNEGICNELVRLARERGVFVFVEQTP-------------RLLERIYEGPEFPNVVKPDLRGNHASFLGVD 216 (331)
T ss_dssp EEEESCCCTTSCTTHHHHHHHHHHHTTCEEEEECCH-------------HHHHHHHHSSCCCSEECCCCTTCCSCBTTBC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCh-------------HHHHHHHhcCCCCeEEEeCccchHHHHhCCC
Confidence 999998765566688899999999999999999962 12445555 49999999999 99998863
Q ss_pred -----CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEec-CccccccCCCCchHHHHHHHHHHHH-cCCCHHHH
Q 011562 313 -----NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAP-AFKVNVTDTVGCGDSFVAAVAFGFI-HNMPTVNT 385 (483)
Q Consensus 313 -----~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vp-a~~v~vvDttGAGDaF~Ag~l~gl~-~g~~l~~a 385 (483)
++.++++.|++. + +.||||+|++|++++++++.+++| +++++++|||||||+|+|||+++|+ +|+++++|
T Consensus 217 ~~~~~~~~~~~~~l~~~-~--~~vvvT~G~~Ga~~~~~~~~~~~~~~~~v~vvDttGAGDaF~ag~l~~l~~~g~~~~~a 293 (331)
T 2ajr_A 217 LKTFDDYVKLAEKLAEK-S--QVSVVSYEVKNDIVATREGVWLIRSKEEIDTSHLLGAGDAYVAGMVYYFIKHGANFLEM 293 (331)
T ss_dssp CCSHHHHHHHHHHHHHH-S--SEEEEEETTTEEEEECSSCEEEEEESSCCCGGGCTTHHHHHHHHHHHHHHHHCSCHHHH
T ss_pred CCCHHHHHHHHHHHHHh-c--CEEEEeecCCceEEEeCCcEEEEecCCcccccCCCchHHHHHHHHHHHHHHcCCCHHHH
Confidence 455678888887 5 789999999999999888888999 9999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhcCC
Q 011562 386 LTIANAVGAATAMGCGAGRNVATLERVIELMRASNL 421 (483)
Q Consensus 386 l~~A~aaAa~~v~~~G~~~~~p~~~ev~~~l~~~~~ 421 (483)
+++|+++|++++++.|+ .+|+++|++++++++.+
T Consensus 294 l~~A~a~aa~~v~~~G~--~~~~~~ev~~~~~~~~~ 327 (331)
T 2ajr_A 294 AKFGFASALAATRRKEK--YMPDLEAIKKEYDHFTV 327 (331)
T ss_dssp HHHHHHHHHHHTTSSSC--CCCCHHHHHTTGGGEEE
T ss_pred HHHHHHHHHHHHcCcCc--CCCCHHHHHHHHhhcEE
Confidence 99999999999999997 48999999998887655
No 29
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=5e-43 Score=348.99 Aligned_cols=303 Identities=18% Similarity=0.171 Sum_probs=242.3
Q ss_pred CccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHH
Q 011562 81 SIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (483)
Q Consensus 81 ~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i 160 (483)
|.+|+|+|++++|++..+++.|.+++..+. .....+||++.|+|++|++||.++.++|.+|+|.+|+++
T Consensus 3 m~~i~viG~~~~D~~~~~~~~~~~~~~~~~-----------~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~l 71 (317)
T 2nwh_A 3 MKKILVLGGAHIDRRGMIETETAPGASNPG-----------SWMEEAGGGGFNAARNLSRLGFEVRIIAPRGGDVTGEVV 71 (317)
T ss_dssp CCEEEEESCCEEEEEEEESSSCCTTSCCCE-----------EEEEEEECHHHHHHHHHHHTTCEEEEECEEESSHHHHHH
T ss_pred CCeEEEECchheEEeeccCCCCCCCCCceE-----------eEEEeCCcHHHHHHHHHHhcCCCcEEEEeecCCchHHHH
Confidence 457999999999999998877776654321 234567888999999999999999999999999999999
Q ss_pred HHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCccccccc-CCCCChhhhhhhhccHHHHHhhcCCcEEEE
Q 011562 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRA-DFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (483)
Q Consensus 161 ~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~v~i 239 (483)
++.|+++||+++++ ..++. +|+.++++++++|++.+.... ........+++... .+.+.+..++++++
T Consensus 72 ~~~L~~~gV~~~~~-~~~~~--------~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~ 140 (317)
T 2nwh_A 72 AEAARQAGVEDTPF-TFLDR--------RTPSYTAILERDGNLVIALADMDLYKLFTPRRLKVR--AVREAIIASDFLLC 140 (317)
T ss_dssp HHHHHHTTCEECCE-EETTS--------CCCEEEEEECTTSCEEEEEEECGGGGGCCHHHHTSH--HHHHHHHHCSEEEE
T ss_pred HHHHHHcCCCCCCc-ccCCC--------CCceEEEEEcCCCCEEEEEcchHHHhhCCHHHhhhh--hhhhHhccCCEEEE
Confidence 99999999999984 43332 488899999988887653211 11111111111110 01145678999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCC--CCHHHH
Q 011562 240 NGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL--RNPITA 317 (483)
Q Consensus 240 sG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~--~~~~~~ 317 (483)
++ ..+.+.+..+++.++++|+++++||+.. ...+.+.++++++|++++|++|++.|+|. .+..++
T Consensus 141 ~~----~~~~~~~~~~~~~a~~~g~~v~~Dp~~~---------~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~ 207 (317)
T 2nwh_A 141 DA----NLPEDTLTALGLIARACEKPLAAIAISP---------AKAVKLKAALGDIDILFMNEAEARALTGETAENVRDW 207 (317)
T ss_dssp ET----TSCHHHHHHHHHHHHHTTCCEEEECCSH---------HHHGGGTTTGGGCSEEEEEHHHHHHHHC-----CTTH
T ss_pred eC----CCCHHHHHHHHHHHHhcCCeEEEeCCCH---------HHHHHHHHHhhhCeEecCCHHHHHHHhCCChhHHHHH
Confidence 84 4567889999999999999999999631 11234567889999999999999999986 455677
Q ss_pred HHHHHHcCCCccEEEEEeCCCcEEEEECCe-eEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 011562 318 GQELLRKGLRTKWVVVKMGPRGSILVTKSS-ISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAAT 396 (483)
Q Consensus 318 ~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~-~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~ 396 (483)
++.|++.|+ +.||||+|++|++++++++ .+++|+++++++||+||||+|+|||+++|++|+++++|+++|+++|+.+
T Consensus 208 ~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~v~~vdt~GAGDaf~a~~~~~l~~g~~~~~a~~~A~~~aa~~ 285 (317)
T 2nwh_A 208 PNILRKAGL--SGGVVTRGASEVVAFNGTEKAILHPPLIREVKDVTGAGDAMASGYLAAIAEGKTIREALRQGAAAAAIT 285 (317)
T ss_dssp HHHHHHTTC--CCEEEEETTTEEEEECSSCEEEECCCCSSSCSCCCCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC--CEEEEEECCCcEEEEcCCCceEEeCCCCccccCCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 888988876 7799999999999988764 6889999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCHHHHHHHHHhcC
Q 011562 397 AMGCGAGRNVATLERVIELMRASN 420 (483)
Q Consensus 397 v~~~G~~~~~p~~~ev~~~l~~~~ 420 (483)
+++.|+....|+++++++++..++
T Consensus 286 v~~~G~~~~~~~~~~v~~~~~~~~ 309 (317)
T 2nwh_A 286 VQSSFATSQDLSKDSVEAMLGLVP 309 (317)
T ss_dssp HSSTTCCGGGCCHHHHHHHHTTSC
T ss_pred HcCCCCCCCCCCHHHHHhHhhhhc
Confidence 999998877899999998766543
No 30
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A*
Probab=100.00 E-value=1.8e-42 Score=343.66 Aligned_cols=295 Identities=22% Similarity=0.233 Sum_probs=234.9
Q ss_pred cEEEE-CCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHH
Q 011562 83 DVATL-GNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (483)
Q Consensus 83 ~Vlvi-G~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~ 161 (483)
+|+++ |++++|+++.+++ +.+++..+. ......+||++.|+|+++++||.++.++|.+|+| +|++++
T Consensus 3 ~I~~v~g~~~~D~~~~~~~-~~~g~~~~~----------~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~d-~g~~i~ 70 (309)
T 3cqd_A 3 RIYTLTLAPSLDSATITPQ-IYPEGKLRC----------TAPVFEPGGGGINVARAIAHLGGSATAIFPAGGA-TGEHLV 70 (309)
T ss_dssp CEEEECSSCEEEEEEEESC-CCSSSEEEC----------CCCEEEEESHHHHHHHHHHHTTCCEEEEEEECHH-HHHHHH
T ss_pred eEEEEeccchheEEEEcCC-CcCCCeeec----------cceeecCCchHHHHHHHHHHcCCCeEEEEEecCc-hHHHHH
Confidence 46655 6999999999998 455654432 1455667898999999999999999999999998 999999
Q ss_pred HHHHHcCCCccceeecCCCCccccCcccceeEEEE-ECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEe
Q 011562 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVL-VDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCN 240 (483)
Q Consensus 162 ~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~-vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~is 240 (483)
+.|+++||+++++...++ |+.++++ ++++|++.++...+.. ...+.+..+.+.+...+++ +++|++
T Consensus 71 ~~l~~~gv~~~~v~~~~~----------t~~~~~~~~~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~-~~v~~~ 137 (309)
T 3cqd_A 71 SLLADENVPVATVEAKDW----------TRQNLHVHVEASGEQYRFVMPGAA--LNEDEFRQLEEQVLEIESG-AILVIS 137 (309)
T ss_dssp HHHHHTTCCEEEEECSSC----------CCCCEEEEETTTCCEEEEECCCCC--CCHHHHHHHHHHHHTSCTT-CEEEEE
T ss_pred HHHHHcCCCceeEEcCCC----------CeeEEEEEEcCCCCEEEEEcCCCC--CCHHHHHHHHHHHHHhhcC-CEEEEE
Confidence 999999999999865432 4444566 7877877654433221 1112222222233345677 999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHh-hhcCC-CEEEcCHHHHHHhhCCC-----C
Q 011562 241 GYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSY-FLSTS-DVLLLTSDEAESLTGLR-----N 313 (483)
Q Consensus 241 G~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~-ll~~~-dil~~N~~Ea~~l~g~~-----~ 313 (483)
|+.+...+.+.+.++++.++++|+++++||++. .+.+ +.+++ |++++|++|++.++|.. +
T Consensus 138 g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~-------------~~~~~l~~~~~dil~~N~~E~~~l~g~~~~~~~~ 204 (309)
T 3cqd_A 138 GSLPPGVKLEKLTQLISAAQKQGIRCIVDSSGE-------------ALSAALAIGNIELVKPNQKELSALVNRELTQPDD 204 (309)
T ss_dssp SCCCTTCCHHHHHHHHHHHHTTTCEEEEECCHH-------------HHHHHTTTCCBSEECCBHHHHHHHHTSCCCSTTH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCeEEEECChH-------------HHHHHHHhCCCEEEeeCHHHHHHHhCCCCCCHHH
Confidence 988766778899999999999999999999631 1233 33788 99999999999999863 5
Q ss_pred HHHHHHHHHHcC-CCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011562 314 PITAGQELLRKG-LRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAV 392 (483)
Q Consensus 314 ~~~~~~~l~~~g-~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aa 392 (483)
+.++++.|++.| + +.||||+|++|++++++++.+++|+++++++||+||||+|+|||+++|++|+++++|+++|+++
T Consensus 205 ~~~~~~~l~~~g~~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~vdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~~~ 282 (309)
T 3cqd_A 205 VRKAAQEIVNSGKA--KRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENASLEEMVRFGVAA 282 (309)
T ss_dssp HHHHHHHHHHTTSB--SCEEEECGGGCEEEECSSCEEEECCCSCCCCCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC--CEEEEEecCCceEEEECCceEEEeCCccccCCCcCcHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 677888999887 6 7799999999999998888889999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCCCCHHHHHHHHHhc
Q 011562 393 GAATAMGCGAGRNVATLERVIELMRAS 419 (483)
Q Consensus 393 Aa~~v~~~G~~~~~p~~~ev~~~l~~~ 419 (483)
|+.++++.|+. .|+++|++++++++
T Consensus 283 aa~~~~~~G~~--~~~~~~v~~~~~~~ 307 (309)
T 3cqd_A 283 GSAATLNQGTR--LCSHDDTQKIYAYL 307 (309)
T ss_dssp HHHHTC-------CCCHHHHHHHHHHH
T ss_pred HHHHHcCcCCC--CCCHHHHHHHHHHh
Confidence 99999999964 79999999998865
No 31
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri}
Probab=100.00 E-value=9e-43 Score=347.44 Aligned_cols=287 Identities=21% Similarity=0.246 Sum_probs=234.0
Q ss_pred ccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcC----CceEEEEEecCChhh
Q 011562 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLG----LDCVTIGHVGNEIYG 157 (483)
Q Consensus 82 ~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG----~~v~lig~vG~D~~g 157 (483)
++|+|+|++++|++...+ .....+||++.|+|+++++|| .++.++|.+|+|.+|
T Consensus 5 ~~i~viG~~~~D~~~~~~----------------------~~~~~~GG~~~NvA~~la~LG~~~~~~~~~ig~vG~D~~G 62 (319)
T 3lhx_A 5 KKIAVIGECMIELSEKGA----------------------DVKRGFGGDTLNTSVYIARQVDPAALTVHYVTALGTDSFS 62 (319)
T ss_dssp EEEEEESCCEEEEEC-------------------------CCEEEEECHHHHHHHHHHTTSCTTTEEEEEECEECSSHHH
T ss_pred CceeeechhhhhhccCCC----------------------ceEEecCChHHHHHHHHHHcCCCCCCcEEEEEEeCCCHHH
Confidence 689999999999985421 224456898999999999999 899999999999999
Q ss_pred HHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhh-hccHHHHHhhcCCcE
Q 011562 158 RFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMN-KLSAEVKTAIKHSKV 236 (483)
Q Consensus 158 ~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~~~~ 236 (483)
+++++.|+++||+++++...++.+ |+.+++.++++|++.++...+... ...++. ...+.+.+.++++++
T Consensus 63 ~~l~~~L~~~GV~~~~v~~~~~~~--------T~~~~i~~~~~g~r~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~ 132 (319)
T 3lhx_A 63 QQMLDAWHGENVDTSLTQRMENRL--------PGLYYIETDSTGERTFYYWRNEAA--AKFWLASEQSAAICEELANFDY 132 (319)
T ss_dssp HHHHHHHHTTTEECTTCEECTTCC--------CCEEEEEC----CCEEEEECTTCG--GGGTTSSSSHHHHHHHHTTCSE
T ss_pred HHHHHHHHHcCCCcceEEEcCCCC--------ceEEEEEeCCCCCeeEEEecCCCH--HHhccCccchhhHHHHhcCCCE
Confidence 999999999999999997766543 888889998888888754332110 011111 111334567889999
Q ss_pred EEEecCCCCC---CCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCC
Q 011562 237 LFCNGYGFDE---LSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRN 313 (483)
Q Consensus 237 v~isG~~~~~---~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~ 313 (483)
+|++|+.+.. .+.+.+.++++.++++|+++++||++++. +|.......+.+.++++++|++++|++|++.++|..+
T Consensus 133 v~~~g~~~~~l~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~-~~~~~~~~~~~~~~ll~~~di~~~n~~E~~~l~g~~~ 211 (319)
T 3lhx_A 133 LYLSGISLAILSPTSREKLLSLLRECRAKGGKVIFDNNYRPR-LWASKEETQQVYQQMLECTDIAFLTLDDEDALWGQQP 211 (319)
T ss_dssp EEEEHHHHHTSCHHHHHHHHHHHHHHHHTTCEEEEECCCCGG-GSSCHHHHHHHHHHHHTTCSEEEEEHHHHHHHHCCCC
T ss_pred EEEcCchhhhcCchhHHHHHHHHHHHHhcCCEEEEeCcCCcc-cccCHHHHHHHHHHHHhhCCcccCCHHHHHHHhCCCC
Confidence 9999986533 33478889999999999999999987654 3444445567788999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeE-EecCc---cccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHH
Q 011562 314 PITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSIS-CAPAF---KVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIA 389 (483)
Q Consensus 314 ~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~-~vpa~---~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A 389 (483)
..++++.|++.|+ +.||||+|++|++++++++.+ ++|++ +++++||+||||+|+|||+++|++|+++++|+++|
T Consensus 212 ~~~~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A 289 (319)
T 3lhx_A 212 VEDVIARTHNAGV--KEVVVKRGADSCLVSIAGEALVDVPAVKLPKEKVIDTTAAGDSFSAGYLAVRLTGGSAENAAKRG 289 (319)
T ss_dssp HHHHHHHHHHTTC--SEEEEEETTEEEEEEETTSCCEEECCCCCCGGGCCCCTTHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CEEEEEECCCCeEEEECCcceEEcccccCCCCccCCCCCccHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999876 789999999999999988755 88886 56899999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCC
Q 011562 390 NAVGAATAMGCGAG 403 (483)
Q Consensus 390 ~aaAa~~v~~~G~~ 403 (483)
+++|+.++++.|+.
T Consensus 290 ~~~aa~~v~~~Ga~ 303 (319)
T 3lhx_A 290 HLTASTVIQYRGAI 303 (319)
T ss_dssp HHHHHHHTTSSSSS
T ss_pred HHHHHhhhccCCCc
Confidence 99999999999975
No 32
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*
Probab=100.00 E-value=1.2e-42 Score=347.94 Aligned_cols=289 Identities=21% Similarity=0.269 Sum_probs=239.9
Q ss_pred CCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHc--CCceEEEEEecCChhh
Q 011562 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARL--GLDCVTIGHVGNEIYG 157 (483)
Q Consensus 80 ~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larL--G~~v~lig~vG~D~~g 157 (483)
+|++|+|+|++++|++... ++ ......+||+++|+|++|++| |.++.++|.+|+|.+|
T Consensus 22 ~m~~i~viG~~~iD~~~~~------~~--------------~~~~~~~GG~~~NvA~~la~Lg~G~~~~~ig~vG~D~~G 81 (328)
T 4e69_A 22 SMMHILSIGECMAELAPAD------LP--------------GTYRLGFAGDTFNTAWYLARLRPESRISYFSAIGDDALS 81 (328)
T ss_dssp SSCEEEEESCCEEEEEECS------ST--------------TEEEEEEECHHHHHHHHHHHHCTTSEEEEECEECSSHHH
T ss_pred cCCcEEEecCcEEEEecCC------CC--------------CceEEecCCHHHHHHHHHHhcCCCCcEEEEEeeCCCHHH
Confidence 4678999999999999851 11 022445689999999999999 8999999999999999
Q ss_pred HHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEE
Q 011562 158 RFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVL 237 (483)
Q Consensus 158 ~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v 237 (483)
+++++.|++.||+++++.+.++.+ |+.+++.++ +|++.+........ ...++. ..+.....++++|++
T Consensus 82 ~~l~~~L~~~GV~~~~v~~~~~~~--------T~~~~v~~~-~g~r~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~v 149 (328)
T 4e69_A 82 QQMRAAMSAAGIDGGGLRVIPGRT--------VGLYLITLE-QGERSFAYWRGQSA--ARELAG-DADALAAAMARADVV 149 (328)
T ss_dssp HHHHHHHHHTTEECTTCEECTTCC--------CEEEEEEEE-TTEEEEEEECTTCG--GGGTTS-CHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHcCCccceEEEcCCCC--------CeEEEEEec-CCceEEEEeCCCCH--HHhhcC-ccccchHHhcCCCEE
Confidence 999999999999999987765543 888999999 88887754332211 001111 111123567899999
Q ss_pred EEecCCCC---CCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCH
Q 011562 238 FCNGYGFD---ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNP 314 (483)
Q Consensus 238 ~isG~~~~---~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~ 314 (483)
|++||.+. +.+.+.+.++++.+++.++++++||+.++. +|.......+.+.++++++|++++|++|++.|+|.++.
T Consensus 150 ~~~g~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~-~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~ 228 (328)
T 4e69_A 150 YFSGITLAILDQCGRATLLRALAQARATGRTIAFDPNLRPR-LWAGTGEMTETIMQGAAVSDIALPSFEDEAAWFGDAGP 228 (328)
T ss_dssp EEEHHHHHTSCHHHHHHHHHHHHHHHHTTCEEEEECCCCGG-GCSCHHHHHHHHHHHHTTCSEECCBHHHHHHHHTCSSH
T ss_pred EECCchhhccCchHHHHHHHHHHHHHhCCCEEEEeCCCChh-hcCCHHHHHHHHHHHHHhCCEEeCCHHHHHHHcCCCCH
Confidence 99998542 334577889999999999999999987664 34444556778889999999999999999999999999
Q ss_pred HHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCcc-ccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011562 315 ITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFK-VNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVG 393 (483)
Q Consensus 315 ~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~-v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaA 393 (483)
.++++.|.+.|+ +.||||+|++|++++++++.+++|+++ ++++||+||||+|+|||+++|++|+++++|+++|+++|
T Consensus 229 ~~~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~l~~a~~~A~~~a 306 (328)
T 4e69_A 229 DATADRYARAGV--RSVVVKNGPHAVHFLQDGRRGRVPVPPVAQVVDTTAAGDSFNAGLLDSVLAGQPLETAIAAAAALA 306 (328)
T ss_dssp HHHHHHHHTTTC--SEEEEBCTTSCEEEEETTEEEEECCCCCCSCCCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CEEEEEeCCCCeEEEeCCceEEecCCCCCCccCCCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 999999998876 889999999999999999999999986 79999999999999999999999999999999999999
Q ss_pred HHHhcccCCC
Q 011562 394 AATAMGCGAG 403 (483)
Q Consensus 394 a~~v~~~G~~ 403 (483)
+.++++.|+.
T Consensus 307 a~~v~~~Ga~ 316 (328)
T 4e69_A 307 GQVVQGKGAL 316 (328)
T ss_dssp HHHHTSSSSS
T ss_pred HHHHccCCCc
Confidence 9999999975
No 33
>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A*
Probab=100.00 E-value=3.8e-43 Score=354.20 Aligned_cols=306 Identities=16% Similarity=0.238 Sum_probs=237.7
Q ss_pred CCccEEEECCceeEEEecCCC-------CCCCChhhhh----HHhhhhccCCCCCccccCCcHHHHHHHHHHc----CCc
Q 011562 80 KSIDVATLGNLCVDIVLNVPQ-------LPPPSRDARK----AYMDQLSASPPDKQYWEAGGNCNVAIAAARL----GLD 144 (483)
Q Consensus 80 ~~~~VlviG~~~iD~~~~v~~-------~p~~~~~~~~----~~~~~~~~~~~~~~~~~GGg~~NvA~~larL----G~~ 144 (483)
+.++|+++|++++|++..++. +.+....... ........ .......+||++.|+|+++++| |.+
T Consensus 6 ~~~~v~~iG~~~lD~~~~v~~~~l~~~~l~~g~~~l~~~~~~p~~~~~~~-~~~~~~~~GG~~~N~a~~la~L~~~~G~~ 84 (347)
T 3otx_A 6 APLRVYVQCNPLLDVSAHVSDEFLVKYGLERGTAILLSERQKGIFDDIEK-MPNVRYVPGGSGLNVARVAQWMQQAYKGK 84 (347)
T ss_dssp CCCCEEEECCCEEEEEEECCHHHHHHTTCCTTCEEECCGGGTTHHHHHHT-STTCEEEECCHHHHHHHHHHHTTGGGTTS
T ss_pred CCCcEEEECCceeeEEEecCHHHHHHcCCCCCceEEcCHHHHHHHHHHhc-cCCeEEecCCHHHHHHHHHHHhcccCCCC
Confidence 467899999999999999985 2211110000 00001111 1245667889999999999999 999
Q ss_pred -eEEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhc
Q 011562 145 -CVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKL 223 (483)
Q Consensus 145 -v~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l 223 (483)
+.++|.+|+|.+|+++++.|++.||+++++.. .+. +|+.++++++ +|+|+++...+.......+.+..
T Consensus 85 ~~~~ig~vG~D~~g~~~~~~l~~~GV~~~~~~~-~~~--------~T~~~~i~~~-~g~r~~~~~~ga~~~~~~~~~~~- 153 (347)
T 3otx_A 85 FVTYVGCIADDRYGKVLKEAAEHEGIVMAVEHT-TKA--------GSGACAVCIT-GKERTLVADLGAANHLSSEHMRS- 153 (347)
T ss_dssp SEEEECEECSSHHHHHHHHHHHHHTCEECCEEC-SSS--------CEEEEEEEEE-TTEEEEEEEEEGGGGCCHHHHTS-
T ss_pred eEEEEEEecCChHHHHHHHHHHHCCCceecccC-CCC--------CCeEEEEEEE-CCceeeeechhhhhcCCHHHcCc-
Confidence 99999999999999999999999999998853 322 4999999998 78887755332221112222221
Q ss_pred cHHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHH
Q 011562 224 SAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSD 303 (483)
Q Consensus 224 ~~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~ 303 (483)
..+.+.+++++++|++||.+. .+.+.+.++++.++++|+++++|++.. ++ ....++.+.++++++|++++|++
T Consensus 154 -~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~a~~~g~~v~~d~~~~---~~--~~~~~~~l~~~l~~~dil~~N~~ 226 (347)
T 3otx_A 154 -PAVVRAMDESRIFYFSGFTLT-VDVNHVLQACRKAREVDGLFMINLSAP---FI--MQFFSAQLGEVLPYTDIIVANRH 226 (347)
T ss_dssp -HHHHHHHHHCSEEEEEGGGGG-TCHHHHHHHHHHHHHTTCEEEEECCCH---HH--HHHCHHHHHHHGGGCSEEEEEHH
T ss_pred -hhhHHHHhhCCEEEEeeeecc-cCHHHHHHHHHHHHHhCCEEEeeCchh---hh--HHHHHHHHHHHHhhCCEEecCHH
Confidence 223456789999999999764 678899999999999999999999631 11 12335678899999999999999
Q ss_pred HHHHhhCC-----CCHHHHHHHHHH------cCCCccEEEEEeCCCcEEEEECCeeEEecCccc---cccCCCCchHHHH
Q 011562 304 EAESLTGL-----RNPITAGQELLR------KGLRTKWVVVKMGPRGSILVTKSSISCAPAFKV---NVTDTVGCGDSFV 369 (483)
Q Consensus 304 Ea~~l~g~-----~~~~~~~~~l~~------~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v---~vvDttGAGDaF~ 369 (483)
|++.+++. .++.++++.|.+ .++ +.||||+|++|++++++++.+++|++++ +++|||||||+|+
T Consensus 227 Ea~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~--~~vvvT~G~~Ga~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ 304 (347)
T 3otx_A 227 EAKEFANMMKWDTDCVEEIARRAVSEVPYTGTKG--RVVVFTRDIESTVLATKDGVETVPVPQLDQDKVIDMNGAGDAFM 304 (347)
T ss_dssp HHHHHHHHHTCCCCCHHHHHHHHHHTSCCCCSSC--CEEEEEETTEEEEEEETTEEEEECCCCCCGGGCCSSCCSHHHHH
T ss_pred HHHHHhcccCCCcCCHHHHHHHHHhhhccccCCC--CEEEEEeCCCCeEEEECCeEEEEEecccCCCCCCCCCChHHHHH
Confidence 99999864 678889999984 444 8899999999999999999899998877 8999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 011562 370 AAVAFGFIHNMPTVNTLTIANAVGAATAMGCGAGRNVAT 408 (483)
Q Consensus 370 Ag~l~gl~~g~~l~~al~~A~aaAa~~v~~~G~~~~~p~ 408 (483)
|||+++|++|+++++|+++|+++|+.+|++.|+. +|+
T Consensus 305 ag~l~~l~~g~~l~~a~~~a~~~aa~~v~~~G~~--~p~ 341 (347)
T 3otx_A 305 GGFLSAYAVGKDLRRCCETGHYTAQEVIQRDGCS--FPE 341 (347)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHTCC------CC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHcccCCC--CCC
Confidence 9999999999999999999999999999999964 554
No 34
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1
Probab=100.00 E-value=4.4e-42 Score=340.40 Aligned_cols=296 Identities=19% Similarity=0.234 Sum_probs=239.8
Q ss_pred cEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHH
Q 011562 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (483)
Q Consensus 83 ~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~ 162 (483)
-++|.|++++|+++.++++ ..++..+. ......+||++.|+|+++++||.++.++|.+|+ .+|+++++
T Consensus 2 i~tv~~n~~~D~~~~~~~~-~~g~~~~~----------~~~~~~~GG~~~N~A~~la~LG~~~~~~~~vG~-~~g~~i~~ 69 (306)
T 2abq_A 2 IYTVTLNPSIDYIVQVENF-QQGVVNRS----------ERDRKQPGGKGINVSRVLKRLGHETKALGFLGG-FTGAYVRN 69 (306)
T ss_dssp EEEEESSCEEEEEEECTTC-CSSSEEEC----------SEEEEEEECHHHHHHHHHHHTTCCCEEEEEEEH-HHHHHHHH
T ss_pred EEEEecCchheEEEEcCCc-ccCCeEEe----------ceeEecCCchHHHHHHHHHHcCCCceEEEEecc-hhHHHHHH
Confidence 4678899999999999997 55554332 134556788899999999999999999999998 79999999
Q ss_pred HHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecC
Q 011562 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (483)
Q Consensus 163 ~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~ 242 (483)
.|++.||+++++...++ |+.++++ .+|++.++...... ...+.+..+.+.+. .+++++++|++|+
T Consensus 70 ~L~~~gv~~~~v~~~~~----------t~~~~~~--~~g~~~~~~~~g~~--~~~~~~~~~~~~~~-~~~~~~~v~~~g~ 134 (306)
T 2abq_A 70 ALEKEEIGLSFIEVEGD----------TRINVKI--KGKQETELNGTAPL--IKKEHVQALLEQLT-ELEKGDVLVLAGS 134 (306)
T ss_dssp HHHHTTCEECCEEESSC----------CEEEEEE--ESSSCEEEBCCCCC--CCHHHHHHHHHHHT-TCCTTCEEEEESC
T ss_pred HHHHcCCceEEEEcCCC----------CceEEEE--eCCceEEEECCCCC--CCHHHHHHHHHHHH-hccCCCEEEEecC
Confidence 99999999999876432 5555555 35666544332211 11111111111111 1578999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc-CCCEEEcCHHHHHHhhCCC-----CHHH
Q 011562 243 GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS-TSDVLLLTSDEAESLTGLR-----NPIT 316 (483)
Q Consensus 243 ~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~-~~dil~~N~~Ea~~l~g~~-----~~~~ 316 (483)
.+...+.+.+.++++.++++|+++++||++ +.+.++++ ++|++++|++|+..++|.. +..+
T Consensus 135 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~-------------~~~~~~l~~~~dil~~N~~E~~~l~g~~~~~~~~~~~ 201 (306)
T 2abq_A 135 VPQAMPQTIYRSMTQIAKERGAFVAVDTSG-------------EALHEVLAAKPSFIKPNHHELSELVSKPIASIEDAIP 201 (306)
T ss_dssp CCTTSCTTHHHHHHHHHHTTTCEEEEECCH-------------HHHHHHGGGCCSEECCBHHHHHHHHTSCCCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCEEEEECCh-------------HHHHHHHhcCCcEEecCHHHHHHHhCCCCCCHHHHHH
Confidence 776666788999999999999999999952 24567888 9999999999999999873 4566
Q ss_pred HHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 011562 317 AGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAAT 396 (483)
Q Consensus 317 ~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~ 396 (483)
+++.|++.|+ +.||||+|++|++++++++.+++|+++++++||+||||+|+|||+++|++|+++++|+++|+++|+.+
T Consensus 202 ~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~a~~~~~l~~g~~~~~a~~~A~a~aa~~ 279 (306)
T 2abq_A 202 HVQRLIGEGI--ESILVSFAGDGALFASAEGMFHVNVPSGEVRNSVGAGDSVVAGFLAALQEGKSLEDAVPFAVAAGSAT 279 (306)
T ss_dssp HHHHHHHTTC--CEEEEECGGGCEEEEETTEEEEECCCCCCCCCCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--CEEEEecCCCceEEEeCCCEEEEeCCCccccCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 7888888876 78999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCHHHHHHHHHhcCCCcc
Q 011562 397 AMGCGAGRNVATLERVIELMRASNLNED 424 (483)
Q Consensus 397 v~~~G~~~~~p~~~ev~~~l~~~~~~~~ 424 (483)
+++. ++|+++|+++++++++++.+
T Consensus 280 v~~~----~~p~~~ev~~~~~~~~~~~~ 303 (306)
T 2abq_A 280 AFSD----GFCTREEVERLQQQLQRTIK 303 (306)
T ss_dssp HHSS----SCCCHHHHHHHHHHHTTCCE
T ss_pred hcCc----CCCCHHHHHHHHhhEEEEec
Confidence 9998 48999999999999887654
No 35
>4e84_A D-beta-D-heptose 7-phosphate kinase; LPS-heptose biosynthesis, beta-clAsp dimerization region, PF carbohydrate kinase, phosphorylation; HET: MSE ANP M7B GMZ; 2.60A {Burkholderia cenocepacia} PDB: 4e8w_A* 4e8y_A* 4e8z_A*
Probab=100.00 E-value=1.1e-42 Score=351.41 Aligned_cols=291 Identities=18% Similarity=0.231 Sum_probs=230.0
Q ss_pred CCCCccEEEECCceeEEEec--C----CCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEe
Q 011562 78 GVKSIDVATLGNLCVDIVLN--V----PQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHV 151 (483)
Q Consensus 78 ~~~~~~VlviG~~~iD~~~~--v----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~v 151 (483)
.+++++|+|+|++++|++.. + ++.|.+.... ......+||+ +|+|+++++||.+|.++|.+
T Consensus 50 ~~~~~~ilvvG~~~~D~~~~g~v~r~~p~~p~~~~~~------------~~~~~~~GG~-~NvA~~la~LG~~v~~ig~v 116 (352)
T 4e84_A 50 QLARSRVLVVGDVMLDRYWFGNVDRISPEAPVPVVHV------------QRQEERLGGA-ANVARNAVTLGGQAGLLCVV 116 (352)
T ss_dssp HHTTCEEEEEECEEEEEEEEEEEEEECSSSSSEEEEE------------EEEEEEEEEH-HHHHHHHHHTTCEEEEEEEE
T ss_pred hcCCCcEEEECccceEEEEeecccccCCCCCcceEEe------------eEEEEecChH-HHHHHHHHHcCCCEEEEEEe
Confidence 46788999999999999986 3 3334432111 1234445665 89999999999999999999
Q ss_pred cCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhh
Q 011562 152 GNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAI 231 (483)
Q Consensus 152 G~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 231 (483)
|+|.+|+++++.|+++||++. +...++. +|+.+++++++++++..+..... ..........+.+.+.+
T Consensus 117 G~D~~G~~i~~~L~~~GV~~~-~~~~~~~--------~T~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l 184 (352)
T 4e84_A 117 GCDEPGERIVELLGSSGVTPH-LERDPAL--------PTTIKLRVLARQQQLLRVDFEAM---PTHEVLLAGLARFDVLL 184 (352)
T ss_dssp ESSHHHHHHHHHHTTTSCEEE-EEEETTS--------CCCEEEEEEESSCEEEEEEECCC---CCHHHHHHHHHHHHHHG
T ss_pred CCChhHHHHHHHHHHcCCcee-eEECCCC--------CCceEEEEEcCCceEEEEEcCCC---CCHHHHHHHHHHHHHhc
Confidence 999999999999999999995 4343332 48888888887655433322111 11222222234455678
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCC
Q 011562 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL 311 (483)
Q Consensus 232 ~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~ 311 (483)
.++++++++||..... +.+.++++.++++|++|++||++.. + .+++++|++++|++|++.++|.
T Consensus 185 ~~~~~v~~~g~~~~~~--~~~~~~~~~a~~~g~~v~~D~~~~~---~-----------~~l~~~dil~pN~~Ea~~l~g~ 248 (352)
T 4e84_A 185 PQHDVVLMSDYAKGGL--THVTTMIEKARAAGKAVLVDPKGDD---W-----------ARYRGASLITPNRAELREVVGQ 248 (352)
T ss_dssp GGCSEEEEECCSSSSC--SSHHHHHHHHHHTTCEEEEECCSSC---C-----------STTTTCSEECCBHHHHHHHHCC
T ss_pred ccCCEEEEeCCCCCCH--HHHHHHHHHHHhcCCEEEEECCCcc---h-----------hhccCCcEEcCCHHHHHHHhCC
Confidence 9999999998864322 3378899999999999999997632 2 4788999999999999999983
Q ss_pred ----CCHHHHHHHHHH-cCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHH
Q 011562 312 ----RNPITAGQELLR-KGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTL 386 (483)
Q Consensus 312 ----~~~~~~~~~l~~-~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al 386 (483)
.+..++++.|++ .|+ +.||||+|++|++++++++.+++|+++++++|||||||+|+|||+++|++|+++++|+
T Consensus 249 ~~~~~~~~~~a~~l~~~~g~--~~VvvT~G~~Ga~~~~~~~~~~~pa~~v~vvDttGAGDaF~ag~l~~l~~g~~l~~al 326 (352)
T 4e84_A 249 WKSEDDLRARVANLRAELDI--DALLLTRSEEGMTLFSAGGELHAPALAREVFDVSGAGDTVIATVATMLGAGVPLVDAV 326 (352)
T ss_dssp CSSHHHHHHHHHHHHHHHTC--SEEEEECGGGCEEEEETTEEEEECCCCSCCSCCTTHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCC--CEEEEEcCCCcEEEEECCceEEecCCCcCccCCccccHHHHHHHHHHHHcCCCHHHHH
Confidence 245667788875 566 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCCHHHHH
Q 011562 387 TIANAVGAATAMGCGAGRNVATLERVI 413 (483)
Q Consensus 387 ~~A~aaAa~~v~~~G~~~~~p~~~ev~ 413 (483)
++|+++|++++++.|+. .++++||+
T Consensus 327 ~~A~aaaa~~v~~~Ga~--~~t~~el~ 351 (352)
T 4e84_A 327 VLANRAAGIVVGKLGTA--TVDYDELF 351 (352)
T ss_dssp HHHHHHHHHHHTSSSSC--CCCHHHHT
T ss_pred HHHHHHHHHHhcCCCCc--cCCHHHhc
Confidence 99999999999999976 47999885
No 36
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae}
Probab=100.00 E-value=2e-43 Score=358.68 Aligned_cols=305 Identities=18% Similarity=0.252 Sum_probs=234.7
Q ss_pred CCCccEEEECCceeEEEecCCC-------CCCCChhhh----h-HHhhhhccCCCCCccccCCcHHHHHHHHHHc---CC
Q 011562 79 VKSIDVATLGNLCVDIVLNVPQ-------LPPPSRDAR----K-AYMDQLSASPPDKQYWEAGGNCNVAIAAARL---GL 143 (483)
Q Consensus 79 ~~~~~VlviG~~~iD~~~~v~~-------~p~~~~~~~----~-~~~~~~~~~~~~~~~~~GGg~~NvA~~larL---G~ 143 (483)
|++.+|+++|++++|+++.++. +.+.+.... . .+.+.... ......+||++.|+|+++++| |.
T Consensus 21 ~~~~~v~~iG~~~vD~~~~v~~~~l~~~~l~~g~~~l~~~~~~p~~~e~~~~--~~~~~~~GG~~~N~a~~~~~L~~lG~ 98 (365)
T 3loo_A 21 LRDGMLVGLGNPLLDISAVVEKDLLNKYDMQPNNAILAEEKHMPMYQELIEK--YQAEYIAGGSVQNSLRVAQWILQRPR 98 (365)
T ss_dssp CCTTSEEEECCCEEEEEEECCHHHHHHTTCCSSEEEECCGGGTHHHHHHHHH--HCCEEEEECHHHHHHHHHHHHHTCTT
T ss_pred CCCccEEEECCCeEeEEEecCHHHHHHcCCCCCCceechhHHHHHHHHHhhc--CCeEEecCCHHHHHHHHHHHhhcCCC
Confidence 4567899999999999999987 222221100 0 00000000 134566789899999999987 99
Q ss_pred ceEEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhc
Q 011562 144 DCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKL 223 (483)
Q Consensus 144 ~v~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l 223 (483)
++.++|.+|+|.+|+++++.|++.||+++++.. ++. +|+.++++++ +++++++...+.......+.+..
T Consensus 99 ~~~~ig~vG~D~~g~~~~~~l~~~GV~~~~~~~-~~~--------~Tg~~~i~~~-~~~r~~~~~~ga~~~~~~~~~~~- 167 (365)
T 3loo_A 99 TAIFFGCVGQDEYARILEERATSNGVNVQYQRS-ATS--------PTGTCAVLVT-GTQRSLCANLAAANDFTPEHLRS- 167 (365)
T ss_dssp SEEEEEEEESBHHHHHHHHHHHHHTCEEEEEEE-SSS--------CCEEEEEEEE-TTEEEEEEECGGGGGCCGGGGGS-
T ss_pred cEEEEEEecCCchHHHHHHHHHHCCCceecccc-CCC--------CCeEEEEEEE-CCceEEEeccchHhhCCHhHcCc-
Confidence 999999999999999999999999999999876 332 4999999998 67777754333222212222211
Q ss_pred cHHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHH
Q 011562 224 SAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSD 303 (483)
Q Consensus 224 ~~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~ 303 (483)
......+.+++++|++||.+. .+++.+.++++.++++|+++++|++.. ++ ....++.+.++++++|++++|++
T Consensus 168 -~~~~~~~~~~~~v~i~G~~~~-~~~~~~~~~~~~a~~~g~~v~~d~~~~---~~--~~~~~~~l~~~l~~~dil~~N~~ 240 (365)
T 3loo_A 168 -DGNRAYLQGAQFFYVSGFFFT-VSFESALSVAKEAAATGRMFMMNLSAP---FV--PQFYKNNLEEIFPYVDVLFGNET 240 (365)
T ss_dssp -HHHHHHHHHCSEEEEEGGGHH-HHHHHHHHHHHHHHHTTCEEEEECCST---HH--HHHCHHHHHHHGGGCSEEEEEHH
T ss_pred -hhhHHHHhhCCEEEEeeeecc-CCHHHHHHHHHHHHHcCCEEEEECCch---hh--hHHHHHHHHHHHHhCCEEecCHH
Confidence 234456788999999998763 456789999999999999999998532 11 12346678899999999999999
Q ss_pred HHHHhhCC-----CCHHHHHHHHHHcC----CCccEEEEEeCCCcEEEE--ECCeeEEecCccc---cccCCCCchHHHH
Q 011562 304 EAESLTGL-----RNPITAGQELLRKG----LRTKWVVVKMGPRGSILV--TKSSISCAPAFKV---NVTDTVGCGDSFV 369 (483)
Q Consensus 304 Ea~~l~g~-----~~~~~~~~~l~~~g----~~~~~vVvT~G~~G~~~~--~~~~~~~vpa~~v---~vvDttGAGDaF~ 369 (483)
|++.+++. .++.++++.|.+.. .+++.||||+|++|++++ .+++.+++|++++ +++|||||||+|+
T Consensus 241 Ea~~l~g~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvT~G~~Ga~~~~~~~~~~~~~~~~~v~~~~vvDttGAGDaF~ 320 (365)
T 3loo_A 241 EAIALAKEFNYGTEDLREIGKRIAALPKENGKRKRIVIITQGSDPVLLIEAGTDNVREFPVQKLAPEQMVDTNGAGDAFV 320 (365)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHTSCCSSTTSCCEEEEEETTEEEEEEETTCSCCEEECCCCCC------CTTHHHHHH
T ss_pred HHHHHhcccCCCCCCHHHHHHHHHhhhhhccCCCCEEEEEeCCCCEEEEEecCCeEEEEeccccCCCCccCCCChHHHHH
Confidence 99999863 57888999998752 134889999999999999 7777889999987 8999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcccCCC
Q 011562 370 AAVAFGFIHNMPTVNTLTIANAVGAATAMGCGAG 403 (483)
Q Consensus 370 Ag~l~gl~~g~~l~~al~~A~aaAa~~v~~~G~~ 403 (483)
|||+++|++|+++++|+++|+++|+.++++.|+.
T Consensus 321 agfl~~l~~g~~l~~a~~~a~~~Aa~~v~~~G~~ 354 (365)
T 3loo_A 321 GGFLAQLLQSRTVDVCIKCGIWAAREIIQRSGCT 354 (365)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999975
No 37
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A*
Probab=100.00 E-value=3.9e-42 Score=343.86 Aligned_cols=291 Identities=18% Similarity=0.213 Sum_probs=234.5
Q ss_pred ccEEEECCceeEEEecC----------CCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEe
Q 011562 82 IDVATLGNLCVDIVLNV----------PQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHV 151 (483)
Q Consensus 82 ~~VlviG~~~iD~~~~v----------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~v 151 (483)
|+|+|+|++++|+++.+ +++|..+++... ......+||++.|+|++|++||.++.++|.+
T Consensus 1 m~i~v~G~~~iD~~~~~~~~~~~~~~~~~~p~~~~~~~~----------~~~~~~~GG~~~NvA~~la~LG~~~~~i~~v 70 (326)
T 3b1n_A 1 MATLICGSIAYDNIMTFEGRFREHILPDQVHLINLSFLV----------PTMRREFGGCAGNIAYALNLLGGDARMMGTL 70 (326)
T ss_dssp -CEEEESCCEEEEEEECSSCGGGGCCTTSSSSCEEEEEC----------CSCCCEEECHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CcEEEECcceEEEEEecchhhhhhccccccCCCCcceec----------ccceeccCCHHHHHHHHHHHcCCCeeEEEEE
Confidence 37999999999999998 777766543211 1345567899999999999999999999999
Q ss_pred cC-ChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHh
Q 011562 152 GN-EIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTA 230 (483)
Q Consensus 152 G~-D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (483)
|+ | +|+ +++.|++.||+++++.+.++. +|+.++++++++|++.+....+....... ..+ ...
T Consensus 71 G~~D-~g~-i~~~L~~~gVd~~~v~~~~~~--------~T~~~~v~~~~~g~~~~~~~~ga~~~~~~---~~~----~~~ 133 (326)
T 3b1n_A 71 GAVD-AQP-YLDRMDALGLSREYVRVLPDT--------YSAQAMITTDLDNNQITAFHPGAMMQSHV---NHA----GEA 133 (326)
T ss_dssp ETTT-CHH-HHHHHHHHTCEEEEEEEETTC--------CCEEEEEEECTTCCCEEEEECGGGGGGGG---SCG----GGC
T ss_pred CCcC-HHH-HHHHHHHcCCcccceEEcCCC--------CceEEEEEECCCCceEEEEecChhhhcCh---hhc----ccc
Confidence 99 9 899 999999999999998765543 38889999998887765332221111010 111 112
Q ss_pred hcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhC
Q 011562 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTG 310 (483)
Q Consensus 231 l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g 310 (483)
.+++++|++++ .++.+.++++.+++.|+++++||+++... +. .+.+.++++++|++++|++|++.++|
T Consensus 134 -~~~~~v~~~~~-----~~~~~~~~~~~a~~~g~~v~~D~~~~~~~-~~-----~~~~~~~l~~~dil~~N~~Ea~~l~g 201 (326)
T 3b1n_A 134 -KDIKLAIVGPD-----GFQGMVQHTEELAQAGVPFIFDPGQGLPL-FD-----GATLRRSIELATYIAVNDYEAKLVCD 201 (326)
T ss_dssp -CSCSEEEECSC-----CHHHHHHHHHHHHHHTCCEEECCGGGGGG-CC-----HHHHHHHHHHCSEEEEEHHHHHHHHH
T ss_pred -cCCCEEEECCc-----cHHHHHHHHHHHHHCCCEEEEeCchhhhh-cc-----HHHHHHHHHhCCEEecCHHHHHHHhC
Confidence 68999999853 35788899999999999999999875432 21 34567889999999999999999986
Q ss_pred CC--CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCcccc-ccCCCCchHHHHHHHHHHHHcCCCHHHHHH
Q 011562 311 LR--NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVN-VTDTVGCGDSFVAAVAFGFIHNMPTVNTLT 387 (483)
Q Consensus 311 ~~--~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~-vvDttGAGDaF~Ag~l~gl~~g~~l~~al~ 387 (483)
.. +.. .+++. + +.||||+|++|++++++++.+++|+++++ ++|||||||+|+|||+++|++|+++++|++
T Consensus 202 ~~~~~~~----~l~~~-~--~~vvvT~G~~Ga~~~~~~~~~~~~~~~v~~vvDttGAGDaF~ag~l~~l~~g~~~~~a~~ 274 (326)
T 3b1n_A 202 KTGWSED----EIASR-V--QALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGR 274 (326)
T ss_dssp HHCCCHH----HHHTT-S--SEEEEECGGGCEEEEETTEEEEECCCCCSCCCCCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCHH----HHHhc-C--CEEEEecCCCceEEEECCcEEEeCCCCCCCCCCCCCchHHHHHHHHHHHHcCCCHHHHHH
Confidence 42 332 34443 3 78999999999999998888999999986 789999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCCCCCCHHHHHHHHHh
Q 011562 388 IANAVGAATAMGCGAGRNVATLERVIELMRA 418 (483)
Q Consensus 388 ~A~aaAa~~v~~~G~~~~~p~~~ev~~~l~~ 418 (483)
+|+++|+.++++.|+....|+++|+++++++
T Consensus 275 ~A~~~aa~~v~~~G~~~~~~~~~ev~~~l~~ 305 (326)
T 3b1n_A 275 LASLMGALKIAHQGPQTYAPTRAEIDARFET 305 (326)
T ss_dssp HHHHHHHHHHTSSSTTCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCCCHHHHHHHHHH
Confidence 9999999999999988788999999999876
No 38
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A*
Probab=100.00 E-value=1.7e-42 Score=347.61 Aligned_cols=297 Identities=17% Similarity=0.192 Sum_probs=237.4
Q ss_pred CccEEEECCceeEEEecC----------CCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEE
Q 011562 81 SIDVATLGNLCVDIVLNV----------PQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGH 150 (483)
Q Consensus 81 ~~~VlviG~~~iD~~~~v----------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~ 150 (483)
+|+|+|+|++++|+++.+ +++|..+++... ......+||++.|+|+++++||.++.++|.
T Consensus 10 ~m~i~v~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~GG~~~NvA~~la~LG~~~~~i~~ 79 (334)
T 2pkf_A 10 HMTIAVTGSIATDHLMRFPGRFSEQLLPEHLHKVSLSFLV----------DDLVMHRGGVAGNMAFAIGVLGGEVALVGA 79 (334)
T ss_dssp SSEEEEESCCEEEEEEECSSCTHHHHTTSCGGGCCCCCCC----------SEEEEEEECHHHHHHHHHHHTTCEEEEECE
T ss_pred CCeEEEECChhheEEEecChHHhhhhchhhcccccccccc----------ccceecCCChHHHHHHHHHHcCCCeEEEEE
Confidence 368999999999999988 666655443210 123456789999999999999999999999
Q ss_pred ecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHh
Q 011562 151 VGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTA 230 (483)
Q Consensus 151 vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (483)
+|+| +|+ +++.|++.||+++++.+.++. +|+.++++++++|++.+....+....... ..+.. ....
T Consensus 80 vG~D-~g~-i~~~L~~~gV~~~~v~~~~~~--------~T~~~~~~~~~~g~~~~~~~~ga~~~~~~---~~~~~-~~~~ 145 (334)
T 2pkf_A 80 AGAD-FAD-YRDWLKARGVNCDHVLISETA--------HTARFTCTTDVDMAQIASFYPGAMSEARN---IKLAD-VVSA 145 (334)
T ss_dssp ECGG-GHH-HHHHHHTTTEECTTCEECSSC--------CCEEEEEEECTTCCEEEEEECGGGGGGGG---CCHHH-HHHH
T ss_pred EeCc-hHH-HHHHHHHCCCceeeeEecCCC--------CceEEEEEEcCCCCEEEEECCchhhhCCH---hhcCh-hhhh
Confidence 9999 999 999999999999998765543 38889999998888765332221111111 11111 1134
Q ss_pred hcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhC
Q 011562 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTG 310 (483)
Q Consensus 231 l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g 310 (483)
+++++++|++++ .++.+.++++.++++|+++++||+++... |. .+.+.++++++|++++|++|++.++|
T Consensus 146 l~~~~~v~~~~~-----~~~~~~~~~~~a~~~g~~v~~D~~~~~~~-~~-----~~~l~~~l~~~dil~~N~~E~~~l~g 214 (334)
T 2pkf_A 146 IGKPELVIIGAN-----DPEAMFLHTEECRKLGLAFAADPSQQLAR-LS-----GEEIRRLVNGAAYLFTNDYEWDLLLS 214 (334)
T ss_dssp HCSCSEEEEESC-----CHHHHHHHHHHHHHHTCCEEEECGGGGGT-SC-----HHHHHTTTTTCSEEEEEHHHHHHHHH
T ss_pred hcCCCEEEEcCC-----ChHHHHHHHHHHHhcCCeEEEeccchhhh-hh-----HHHHHHHHhcCCEEecCHHHHHHHhc
Confidence 588999999964 35788899999999999999999876432 21 34567899999999999999999986
Q ss_pred CC--CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCe-eEEecCcccc-ccCCCCchHHHHHHHHHHHHcCCCHHHHH
Q 011562 311 LR--NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSS-ISCAPAFKVN-VTDTVGCGDSFVAAVAFGFIHNMPTVNTL 386 (483)
Q Consensus 311 ~~--~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~-~~~vpa~~v~-vvDttGAGDaF~Ag~l~gl~~g~~l~~al 386 (483)
.. +. +.+++. + +.||||+|++|++++++++ .+++|+++++ ++||+||||+|+|||+++|++|+++++|+
T Consensus 215 ~~~~~~----~~l~~~-~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~v~~vvDttGAGDaF~a~~~~~l~~g~~~~~a~ 287 (334)
T 2pkf_A 215 KTGWSE----ADVMAQ-I--DLRVTTLGPKGVDLVEPDGTTIHVGVVPETSQTDPTGVGDAFRAGFLTGRSAGLGLERSA 287 (334)
T ss_dssp HHCCCH----HHHHTT-C--SCEEEECGGGCEEEECTTSCEEEECCCCCSCCCCCTTHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred cCCCCH----HHHHhc-C--CEEEEEeCCCCeEEEeCCCcEEEeCCcCCCCCCCCCCchHHHHHHHHHHHHcCCCHHHHH
Confidence 42 22 234443 3 7899999999999998887 8899999986 78999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhc
Q 011562 387 TIANAVGAATAMGCGAGRNVATLERVIELMRAS 419 (483)
Q Consensus 387 ~~A~aaAa~~v~~~G~~~~~p~~~ev~~~l~~~ 419 (483)
++|+++|+.++++.|+...+|+++|+++++++.
T Consensus 288 ~~A~~~aa~~v~~~G~~~~~p~~~ev~~~l~~~ 320 (334)
T 2pkf_A 288 QLGSLVAVLVLESTGTQEWQWDYEAAASRLAGA 320 (334)
T ss_dssp HHHHHHHHHHHTSSSSSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcCCCCHHHHHHHHHHH
Confidence 999999999999999987899999999999874
No 39
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A*
Probab=100.00 E-value=6.5e-42 Score=340.34 Aligned_cols=299 Identities=21% Similarity=0.321 Sum_probs=237.0
Q ss_pred CccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHH
Q 011562 81 SIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (483)
Q Consensus 81 ~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i 160 (483)
|++|+|+|++++|++...+ +...+. ......+||++.|+|++|++||.++.++|.+|+|.+|+++
T Consensus 1 M~~v~viG~~~iD~~~~~~-----g~~~~~----------~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~g~~i 65 (313)
T 3ewm_A 1 MSLIASIGELLIDLISVEE-----GDLKDV----------RLFEKHPGGAPANVAVGVSRLGVKSSLISKVGNDPFGEYL 65 (313)
T ss_dssp -CEEEEESCCEEEEEESSS-----SCTTTC----------CEEEEEEECHHHHHHHHHHHTTCEEEEEEEEESSHHHHHH
T ss_pred CCcEEEECceeeeeecCCC-----CCcccc----------cceeecCCCHHHHHHHHHHHCCCCeEEEEEeCCCHHHHHH
Confidence 4679999999999997632 211110 1334567888999999999999999999999999999999
Q ss_pred HHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCC-CChhhhhhhhccHHHHHhhcCCcEEEE
Q 011562 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFS-KEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (483)
Q Consensus 161 ~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~v~i 239 (483)
++.|++.||+++++...++. +|+.+++.++. |++.++...+.. ..... +.+. ...++.++++|+
T Consensus 66 ~~~l~~~gv~~~~v~~~~~~--------~T~~~~~~~~~-g~~~~~~~~~~a~~~l~~---~~~~---~~~l~~~~~~~~ 130 (313)
T 3ewm_A 66 IEELSKENVDTRGIVKDEKK--------HTGIVFVQLKG-ASPSFLLYDDVAYFNMTL---NDIN---WDIVEEAKIVNF 130 (313)
T ss_dssp HHHHHHTTCBCTTEEEESSS--------CCEEEEEECSS-SSCEEEECCSSGGGCCCG---GGCC---HHHHHHCSEEEE
T ss_pred HHHHHHcCCCccceeecCCC--------CceEEEEEecC-CCcceEeeccCHHHhCCh---hhCC---HHHhCCCCEEEE
Confidence 99999999999999765544 38888888876 777765432211 01111 1111 234678999999
Q ss_pred ecCCC-CCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHHHHH
Q 011562 240 NGYGF-DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAG 318 (483)
Q Consensus 240 sG~~~-~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~ 318 (483)
+|+.+ .+.+.+.+.++++.++ .++++++||+++...|........+.+.++++++|++++|++|++.+++....
T Consensus 131 ~g~~~~~~~~~~~~~~~~~~a~-~~~~v~~Dp~~~~~~~~~~~~~~~~~~~~~l~~~di~~~N~~E~~~l~~~~~~---- 205 (313)
T 3ewm_A 131 GSVILARNPSRETVMKVIKKIK-GSSLIAFDVNLRLDLWRGQEEEMIKVLEESIKLADIVKASEEEVLYLENQGVE---- 205 (313)
T ss_dssp ESGGGGSTTHHHHHHHHHHHHB-TTBEEEEECCCCGGGGTTCHHHHHHHHHHHHHHCSEEEEEHHHHHHHHTTTCC----
T ss_pred cCcccCCcchHHHHHHHHHHhc-cCCEEEEeCCCChHHcCCCHHHHHHHHHHHHhhCCEEecCHHHHHHHhccCcc----
Confidence 99865 4556688899999888 57999999987764332233445667888999999999999999998764310
Q ss_pred HHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHH
Q 011562 319 QELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFI--HNMPTVNTLTIANAVGAAT 396 (483)
Q Consensus 319 ~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~--~g~~l~~al~~A~aaAa~~ 396 (483)
..+ .+.||||+|++|++++++++.+++|+++++++||+||||+|+|||+++|+ +|+++++|+++|+++|+++
T Consensus 206 ----~~~--~~~vviT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~a~~~~~l~~~~g~~l~~a~~~A~~~aa~~ 279 (313)
T 3ewm_A 206 ----VKG--SMLTAITLGPKGCRLIKNETVVDVPSYNVNPLDTTGAGDAFMAALLVGILKLKGLDLLKLGKFANLVAALS 279 (313)
T ss_dssp ----CCC--SSEEEEECGGGEEEEEETTEEEEEECCCCCCSCCTTHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred ----ccC--ceEEEEEECCCCeEEEECCeeEEcCCCCcccCCCCCchHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 112 25589999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hcccCCCCCCCCHHHHHHHHHhcCC
Q 011562 397 AMGCGAGRNVATLERVIELMRASNL 421 (483)
Q Consensus 397 v~~~G~~~~~p~~~ev~~~l~~~~~ 421 (483)
+++.|+. .+|+++||++++++...
T Consensus 280 v~~~G~~-~~p~~~ev~~~l~~~~~ 303 (313)
T 3ewm_A 280 TQKRGAW-STPRKDELLKYKEAREV 303 (313)
T ss_dssp TTSCSSC-CCCCHHHHTTSHHHHHH
T ss_pred HccCCCC-CCCCHHHHHHHHHHHHH
Confidence 9999985 49999999999987643
No 40
>4gm6_A PFKB family carbohydrate kinase; enzyme function initiative, transferase; 2.00A {Listeria grayi dsm 20601}
Probab=100.00 E-value=3.4e-42 Score=347.74 Aligned_cols=311 Identities=17% Similarity=0.174 Sum_probs=228.9
Q ss_pred CCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHH
Q 011562 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (483)
Q Consensus 80 ~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~ 159 (483)
+|.||+++|++++|+... -+.+-.. . .......||+++|+|++|+|||.+|.++|.||+|.+|++
T Consensus 23 mm~kv~~~GE~m~~l~p~---~~~~~~~-----------~-~~~~~~~GG~~aNvA~~larLG~~~~~ig~vG~D~~G~~ 87 (351)
T 4gm6_A 23 MMKQVVTIGELLMRLSTQ---QGIPFSQ-----------T-TALDIHIGGAEANVAVNLSKLGHPTRIATVVPANPIGKM 87 (351)
T ss_dssp --CEEEEECCCEEEEECC---TTCCGGG-----------C-SEEEEEEECHHHHHHHHHHHTTCCEEEEEEECSSHHHHH
T ss_pred ccCCEEEEcceeEEecCC---CCCCccc-----------c-CeEEEecCChHHHHHHHHHHcCCCeEEEEEeCCCHHHHH
Confidence 566899999999998632 1111110 0 123455789999999999999999999999999999999
Q ss_pred HHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEE
Q 011562 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (483)
Q Consensus 160 i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~i 239 (483)
+++.|+++||+++++...++.+ |...++..+..+++.+...... ..............+.+++++++|+
T Consensus 88 l~~~L~~~GVdt~~v~~~~~~~--------t~~~~~~~~~~~~~~~~~~~~~---~a~~~~~~~d~~~~~~~~~~~~~~~ 156 (351)
T 4gm6_A 88 AVEHLWRHQVDTAFVVEAGDRL--------GTYYLESGTALKAPSVVYDRQH---SSFARHKSMDWDLSELLKGIRVLHV 156 (351)
T ss_dssp HHHHHHHTTEECTTEEECSSCC--------CEEEEECCBTTBCCEEEEECTT---CHHHHCCCCCCCHHHHHTTEEEEEE
T ss_pred HHHHHHHcCCCcccccccCCcc--------ceeEEEEccCCcceEEEEcccc---chhhhCCccccCHHHHHhhccccee
Confidence 9999999999999998766543 4444343444444444322111 1111111111123456789999999
Q ss_pred ecCCC--CCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCC-HHH
Q 011562 240 NGYGF--DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRN-PIT 316 (483)
Q Consensus 240 sG~~~--~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~-~~~ 316 (483)
+|+.+ .+.+.+.+.++++.|+++|++|+|||++|+.. |. ....++.+.++++++|++++|++|+..+++..+ ..+
T Consensus 157 ~g~~l~~~~~~~~~~~~~~~~ak~~g~~v~~D~n~r~~l-w~-~~~~~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~ 234 (351)
T 4gm6_A 157 SGITIALSTFWLEMVVKIIREAKRNGIKISFDMNYRAKL-WE-LEAAKRAYQQLLPLVDYCSAGQMDAVAFFEISSETTD 234 (351)
T ss_dssp EHHHHHHCHHHHHHHHHHHHHHHHTTCEEEEECCCCTTT-SC-HHHHHHHHHHHGGGCSEEECCHHHHHHTSCCCTTCSC
T ss_pred cccchhhchhHHHHHHHHHHHHHHcCCCcccCCCcCchh-hh-hhhHHHHHHHHHHhCCccccCHHHHHHHhCCCCchhH
Confidence 98764 34445788899999999999999999998874 43 345677889999999999999999999998642 222
Q ss_pred HHHHHHHcCCCc------cEEEEEeC--CCcEEEEECCeeEEecCccc-cccCCCCchHHHHHHHHHHHHcCCCHHHHHH
Q 011562 317 AGQELLRKGLRT------KWVVVKMG--PRGSILVTKSSISCAPAFKV-NVTDTVGCGDSFVAAVAFGFIHNMPTVNTLT 387 (483)
Q Consensus 317 ~~~~l~~~g~~~------~~vVvT~G--~~G~~~~~~~~~~~vpa~~v-~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~ 387 (483)
..+.+.+..... +.++++.+ ..|..++..++.++.+++++ +++|||||||+|+|||+++|++|+++++|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~VvDttGAGDaF~ag~l~~l~~g~~~~~al~ 314 (351)
T 4gm6_A 235 YYQAMHDKYPNIELFYATKRTVISASHHLLQGHLWTQGECWESEEYAIYPIVDRVGGGDAYTAAVLHGILSEWRPDETVK 314 (351)
T ss_dssp HHHHHHHHCTTCCEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEECSCSCCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHhhhhhhhhhhccccceeeeccCCceEEEEeCCceEEeCCCCCCCcCCCCChhHHHHHHHHHHHHCCCCHHHHHH
Confidence 333333332221 23445444 44677888888888888776 8999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCCCCCCHHHHHHHHHhc
Q 011562 388 IANAVGAATAMGCGAGRNVATLERVIELMRAS 419 (483)
Q Consensus 388 ~A~aaAa~~v~~~G~~~~~p~~~ev~~~l~~~ 419 (483)
+|+++||+++++.|+.+.+| .+||++++.+-
T Consensus 315 ~A~aaaal~v~~~Ga~~~~~-~~ev~~~l~~~ 345 (351)
T 4gm6_A 315 FATAAAGLKHSIHGDINPFD-EKTIADFAADK 345 (351)
T ss_dssp HHHHHHHHHTTSSSSSCCCC-HHHHHHHHHC-
T ss_pred HHHHHHHHHhCCCCCCCCCC-HHHHHHHHhCC
Confidence 99999999999999876666 57899999753
No 41
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus}
Probab=100.00 E-value=1.5e-41 Score=336.54 Aligned_cols=295 Identities=20% Similarity=0.249 Sum_probs=236.0
Q ss_pred ccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHH
Q 011562 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (483)
Q Consensus 82 ~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~ 161 (483)
|-++|.|++++|+++.++++ ..++..+. ......+||++.|+|+++++||.++.++|.+|+ .+|++++
T Consensus 1 mi~tvt~n~~~D~~~~~~~~-~~g~~~~~----------~~~~~~~GG~~~N~A~~la~LG~~~~~~~~vG~-~~g~~i~ 68 (306)
T 2jg5_A 1 MIYTVTFNPSIDYVIFTNDF-KIDGLNRA----------TATYKFAGGKGINVSRVLKTLDVESTALGFAGG-FPGKFII 68 (306)
T ss_dssp CEEEEESSCEEEEEEECSSC-CTTSEEEC----------SEEEEEEESHHHHHHHHHHHTTCCCEEEEEECH-HHHHHHH
T ss_pred CEEEEecCceEEEEEEcCCc-ccCceEEe----------ceeEecCCchHHHHHHHHHHcCCCeeEEEEecC-cchHHHH
Confidence 35778899999999999984 55554432 134556788899999999999999999999999 5999999
Q ss_pred HHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEec
Q 011562 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNG 241 (483)
Q Consensus 162 ~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG 241 (483)
+.|++.||+++++...++ |+.++++ ++|++.++...+.. ...+.++.+.+.+.. +++++++|++|
T Consensus 69 ~~l~~~gv~~~~v~~~~~----------t~~~~~~--~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~-~~~~~~v~~~g 133 (306)
T 2jg5_A 69 DTLNNSAIQSNFIEVDED----------TRINVKL--KTGQETEINAPGPH--ITSTQFEQLLQQIKN-TTSEDIVIVAG 133 (306)
T ss_dssp HHHHHTTCEECCEECSSC----------CEEEEEE--ESSSEEEEECCCCC--CCHHHHHHHHHHHTT-CCTTCEEEEES
T ss_pred HHHHHCCCceeEEEcCCC----------CeEEEEE--cCCCEEEEECCCCC--CCHHHHHHHHHHHHh-ccCCCEEEEeC
Confidence 999999999999876432 5555554 35666544333211 111111111111111 57899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc-CCCEEEcCHHHHHHhhCCC-----CHH
Q 011562 242 YGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS-TSDVLLLTSDEAESLTGLR-----NPI 315 (483)
Q Consensus 242 ~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~-~~dil~~N~~Ea~~l~g~~-----~~~ 315 (483)
+.+...+.+.+.++++.++++|+++++||++ ..+.++++ ++|++++|++|++.++|.. ++.
T Consensus 134 ~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~-------------~~~~~~l~~~~dil~~N~~E~~~l~g~~~~~~~~~~ 200 (306)
T 2jg5_A 134 SVPSSIPSDAYAQIAQITAQTGAKLVVDAEK-------------ELAESVLPYHPLFIKPNKDELEVMFNTTVNSDADVI 200 (306)
T ss_dssp CCCTTSCTTHHHHHHHHHHHHCCEEEEECCH-------------HHHHHHGGGCCSEECCBHHHHHHHTTSCCCSHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHCCCEEEEECCh-------------HHHHHHHhcCCeEEecCHHHHHHHhCCCCCCHHHHH
Confidence 8765556678889999999999999999952 13456777 6999999999999999864 456
Q ss_pred HHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 011562 316 TAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAA 395 (483)
Q Consensus 316 ~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~ 395 (483)
++++.|++.|+ +.||||+|++|++++++++.+++|+++++++||+||||+|+|||+++|++|+++++|+++|+++|+.
T Consensus 201 ~~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaf~a~~~~~l~~g~~~~~a~~~A~a~aa~ 278 (306)
T 2jg5_A 201 KYGRLLVDKGA--QSVIVSLGGDGAIYIDKEISIKAVNPQGKVVNTVGSGDSTVAGMVAGIASGLSIEKAFQQAVACGTA 278 (306)
T ss_dssp HHHHHHHHTTC--SCEEEECGGGCEEEECSSEEEEEECCCCCCCCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--CEEEEccCCCceEEEeCCcEEEEeCCcccccCCcChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 77888888776 7799999999999998888889999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCCCCHHHHHHHHHhcCCC
Q 011562 396 TAMGCGAGRNVATLERVIELMRASNLN 422 (483)
Q Consensus 396 ~v~~~G~~~~~p~~~ev~~~l~~~~~~ 422 (483)
++++.| +|+++|++++++++.++
T Consensus 279 ~v~~~G----~~~~~ev~~~~~~~~~~ 301 (306)
T 2jg5_A 279 TAFDED----LATRDAIEKIKSQVTIS 301 (306)
T ss_dssp HHTSSS----SCCHHHHHHHHTTCEEE
T ss_pred HHcCCC----CCCHHHHHHHHhceEEE
Confidence 999998 79999999999876653
No 42
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A*
Probab=100.00 E-value=1.9e-41 Score=341.53 Aligned_cols=302 Identities=14% Similarity=0.205 Sum_probs=234.5
Q ss_pred CCccEEEECCceeEEEecCCC-C-----CCCChhhhh------HHhhhhccCCCCCccccCCcHHHHHHHHHHcC----C
Q 011562 80 KSIDVATLGNLCVDIVLNVPQ-L-----PPPSRDARK------AYMDQLSASPPDKQYWEAGGNCNVAIAAARLG----L 143 (483)
Q Consensus 80 ~~~~VlviG~~~iD~~~~v~~-~-----p~~~~~~~~------~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG----~ 143 (483)
++++|+|+|++++|+++.++. + +.++...+. ...+.... ......+||++.|+|+++++|| .
T Consensus 5 ~~~~v~viG~~~~D~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~--~~~~~~~GG~~~NvA~~la~lgg~~~~ 82 (345)
T 1bx4_A 5 RENILFGMGNPLLDISAVVDKDFLDKYSLKPNDQILAEDKHKELFDELVKK--FKVEYHAGGSTQNSIKVAQWMIQQPHK 82 (345)
T ss_dssp CTTCEEEECCCEEEEEEECCHHHHHHTTCCSSEEEECCGGGHHHHHHHHHH--SCCEEEEECHHHHHHHHHHHHHCSSTT
T ss_pred ccccEEEECCcceeEEEecCHHHHHHcCCCCCcEEEchHHHHHHHHHHhcc--CCceecCCcHHHHHHHHHHHhcCCCCC
Confidence 456899999999999999887 1 233321110 00000100 2445667899999999999996 9
Q ss_pred ceEEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhh-hhhh
Q 011562 144 DCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFS-WMNK 222 (483)
Q Consensus 144 ~v~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~-~~~~ 222 (483)
++.++|.+|+|.+|+++++.|+++||+++++.. .+. +|+.++++++ +|++.++...........+ .+..
T Consensus 83 ~~~~ig~vG~D~~G~~i~~~L~~~gv~~~~v~~-~~~--------~T~~~~~~~~-~g~r~~~~~~~a~~~~~~~~~~~~ 152 (345)
T 1bx4_A 83 AATFFGCIGIDKFGEILKRKAAEAHVDAHYYEQ-NEQ--------PTGTCAACIT-GDNRSLIANLAAANCYKKEKHLDL 152 (345)
T ss_dssp CEEEEEEEESSHHHHHHHHHHHHTTCEEEEEEE-SSS--------CCCEEEEEEE-TTEEEEEEECGGGGGCCGGGTTTS
T ss_pred cEEEEEEeCCChhHHHHHHHHHHcCCceeeeec-CCC--------CCceEEEEEc-CCceEeeeccchHhhcCcccccCc
Confidence 999999999999999999999999999999863 222 4888888887 5666654322211111111 1111
Q ss_pred ccHHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCH
Q 011562 223 LSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTS 302 (483)
Q Consensus 223 l~~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~ 302 (483)
....+.+++++++|++|+.+ ..+.+.+.++++.++++|+++++|+... ++ .....+.+.++++++|++++|+
T Consensus 153 --~~~~~~~~~~~~v~~~g~~~-~~~~~~~~~~~~~a~~~g~~v~~d~~~~---~~--~~~~~~~~~~~l~~~dil~~N~ 224 (345)
T 1bx4_A 153 --EKNWMLVEKARVCYIAGFFL-TVSPESVLKVAHHASENNRIFTLNLSAP---FI--SQFYKESLMKVMPYVDILFGNE 224 (345)
T ss_dssp --HHHHHHHHHCSEEEEEGGGG-GTCHHHHHHHHHHHHHTTCEEEEECCSH---HH--HHHTHHHHHHHGGGCSEEEEEH
T ss_pred --HHHHHHHhhCCEEEEEEEec-cCCHHHHHHHHHHHHHcCCEEEEeCCcH---HH--HHHHHHHHHHHhccCCEEeCCH
Confidence 23345577899999999876 3678899999999999999999998531 11 1223456778999999999999
Q ss_pred HHHHHhhC-----CCCHHHHHHHHHH------cCCCccEEEEEeCCCcEEEEECCeeEEecCccc---cccCCCCchHHH
Q 011562 303 DEAESLTG-----LRNPITAGQELLR------KGLRTKWVVVKMGPRGSILVTKSSISCAPAFKV---NVTDTVGCGDSF 368 (483)
Q Consensus 303 ~Ea~~l~g-----~~~~~~~~~~l~~------~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v---~vvDttGAGDaF 368 (483)
+|++.|+| ..++.++++.|++ .|+ +.||||+|++|++++++++.+++|++++ +++|||||||+|
T Consensus 225 ~E~~~l~g~~~~~~~~~~~~~~~l~~~~~~~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~~~vvDttGAGDaf 302 (345)
T 1bx4_A 225 TEAATFAREQGFETKDIKEIAKKTQALPKMNSKRQ--RIVIFTQGRDDTIMATESEVTAFAVLDQDQKEIIDTNGAGDAF 302 (345)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHTSCCSCTTSC--CEEEEEETTEEEEEECSSCEEEECCCCCCCTTCCCHHHHHHHH
T ss_pred HHHHHHhcccCCCCCCHHHHHHHHHhcccccccCC--CEEEEEeCCCCeEEEECCeEEEEeccccCcCccccCCCcchHH
Confidence 99999975 3478888999988 455 7899999999999998888889999887 899999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccCCC
Q 011562 369 VAAVAFGFIHNMPTVNTLTIANAVGAATAMGCGAG 403 (483)
Q Consensus 369 ~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~~~G~~ 403 (483)
+|||+++|++|+++++|+++|+++|+.++++.|+.
T Consensus 303 ~ag~~~~l~~g~~~~~a~~~A~~~aa~~v~~~G~~ 337 (345)
T 1bx4_A 303 VGGFLSQLVSDKPLTECIRAGHYAASIIIRRTGCT 337 (345)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHTTSSSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999975
No 43
>3uq6_A Adenosine kinase, putative; ribokinase, transferase; HET: ADN AMP; 2.30A {Schistosoma mansoni} PDB: 3uq9_A*
Probab=100.00 E-value=6e-41 Score=341.29 Aligned_cols=315 Identities=15% Similarity=0.190 Sum_probs=237.2
Q ss_pred CccEEEECCceeEEEecCCC-------CCCCChh----hhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCc---eE
Q 011562 81 SIDVATLGNLCVDIVLNVPQ-------LPPPSRD----ARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLD---CV 146 (483)
Q Consensus 81 ~~~VlviG~~~iD~~~~v~~-------~p~~~~~----~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~---v~ 146 (483)
.-.|++|||+.+|+...+++ +++.... .+......+... ....+.+||++.|+|+++++||.+ +.
T Consensus 26 ~~~v~giGnalvDi~~~v~d~~l~~~~l~kg~m~l~~~~~~~~~~~~~~~-~~~~~~~GGsa~N~a~~la~LG~~~~~~~ 104 (372)
T 3uq6_A 26 EGYVFGMGNPLLDIIVDADDFMYRKYNLKKDNIVLAEEKHMTIYDEIQKK-KKLNYIAGGATLNTVKMIQWIIQKPFVCS 104 (372)
T ss_dssp TTCEEEEECCEEEEEEECCTHHHHHTTCCTTEEEECCGGGTTHHHHHHTS-SSCEEEECCHHHHHHHHHHHHHCSTTSEE
T ss_pred CCeEEEECCceeeEEEEeCHHHHHHcCCCCCceEEcCHHHHHHHHHHhcc-CCeEEeCCcHHHHHHHHHHHcCCCCCcEE
Confidence 44599999999999999874 3322211 111111222222 245567899999999999999965 89
Q ss_pred EEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHH
Q 011562 147 TIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAE 226 (483)
Q Consensus 147 lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 226 (483)
|+|.||+|.+|+++++.|++.||+++++...++. +|+.++++++ +++|+++...+.......+.+. ...
T Consensus 105 fiG~VG~D~~G~~l~~~L~~~GV~~~~~~~~~~~--------~T~~~~v~~~-dgert~~~~~ga~~~l~~~~i~--~~~ 173 (372)
T 3uq6_A 105 YVGCIGADIQGKYIKNDCSALDLVTEFQIAEEPL--------MTGKVAVLVS-EKLRSMVTYLGAACDLSLAHIE--QPH 173 (372)
T ss_dssp EEEEECSSHHHHHHHHHHHHTTCEECCEECCTTC--------CEEEEEEEEC-SSCEEEEEEEEGGGGCCHHHHT--SHH
T ss_pred EEeeecCCHHHHHHHHHHHHcCCCceeeeecCCC--------CceEEEEEcC-CCceEEEEeccchhhcchhhhh--hhh
Confidence 9999999999999999999999999998766554 3888888886 6788876544333222222221 233
Q ss_pred HHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHH
Q 011562 227 VKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAE 306 (483)
Q Consensus 227 ~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~ 306 (483)
....++.++++|++||... ...+.+.++++.++++|+++++|++... .....++.+.++++++|++++|++|++
T Consensus 174 ~~~~i~~a~~~~~~g~~~~-~~~~~~~~~~~~a~~~g~~v~ldls~~~-----~~~~~~~~l~~ll~~~Dil~~Ne~Ea~ 247 (372)
T 3uq6_A 174 VWSLVEKAQVYYIAGFVIN-TCYEGMLKIAKHSLENEKLFCFNLSAPF-----LSQFNTKEVDEMISYSNIVFGNESEAE 247 (372)
T ss_dssp HHHHHHHCSEEEEEGGGHH-HHHHHHHHHHHHHHHTTCEEEEECCCHH-----HHHHCHHHHHHHHTTCSEEEEEHHHHH
T ss_pred HHHHhhcccEEEEeccccc-ccHHHHHHHHHHHHHcCCeEeeccccch-----hhhhhHHHHHHHhhcCCcccCCHHHHH
Confidence 4567889999999998753 3467888999999999999999986321 112346678899999999999999999
Q ss_pred HhhCC-----CCHHHHHHHHHHcC-----CCccEEEEEeCCCcEEEEECCe----eEEecCcc-ccccCCCCchHHHHHH
Q 011562 307 SLTGL-----RNPITAGQELLRKG-----LRTKWVVVKMGPRGSILVTKSS----ISCAPAFK-VNVTDTVGCGDSFVAA 371 (483)
Q Consensus 307 ~l~g~-----~~~~~~~~~l~~~g-----~~~~~vVvT~G~~G~~~~~~~~----~~~vpa~~-v~vvDttGAGDaF~Ag 371 (483)
.|++. ++..+.++.+.+.. .+.+.||||+|++|++++.+++ .+.+++.+ .++||||||||+|+||
T Consensus 248 ~l~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~v~~~~~~~vVDTtGAGDaF~ag 327 (372)
T 3uq6_A 248 AYGEVHGLLEDTVHATARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAFAAG 327 (372)
T ss_dssp HHHHHTTCCSSHHHHHHHHHHHSCCTTCCCCCCEEEEEETTEEEEEEESSCSSCEEECCCCCCGGGCCCCTTHHHHHHHH
T ss_pred HHhCCCCCchhHHHHHHHHHhhhhhhhhcCCceEEEEcCCCCceEEecCCCceeeeeeccCCCCCceeCCCchHHHHHHH
Confidence 99763 34666777776632 2347799999999999998764 23344443 3799999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHH
Q 011562 372 VAFGFIHNMPTVNTLTIANAVGAATAMGCGAGRNVATLERVIEL 415 (483)
Q Consensus 372 ~l~gl~~g~~l~~al~~A~aaAa~~v~~~G~~~~~p~~~ev~~~ 415 (483)
|+++|++|+++++|+++|+++|+.+|++.|+. +|+++++.-.
T Consensus 328 fl~~l~~g~~l~~a~~~a~~aAa~vv~~~Ga~--lp~r~~~~lk 369 (372)
T 3uq6_A 328 FIADYIRGKPMITSLHAAVKAAAYIICRSGFS--LGSRDSYSLK 369 (372)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHTSSSSC--CCCGGGCC--
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHcCCCCC--CCChhHHHHH
Confidence 99999999999999999999999999999964 8888876543
No 44
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A
Probab=100.00 E-value=1e-39 Score=324.43 Aligned_cols=282 Identities=17% Similarity=0.231 Sum_probs=223.2
Q ss_pred CCCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhH
Q 011562 79 VKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGR 158 (483)
Q Consensus 79 ~~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~ 158 (483)
+++++|+|+|++++|++..++++|.+++..+. ......+||++.|+|++|++||.++.++|.+|+|.+|+
T Consensus 15 ~~~~~i~viG~~~iD~~~~~~~~p~~~~~~~~----------~~~~~~~GG~~~NvA~~la~LG~~v~~ig~vG~D~~G~ 84 (312)
T 2hlz_A 15 PRGSQILCVGLVVLDVISLVDKYPKEDSEIRC----------LSQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVAD 84 (312)
T ss_dssp --CCEEEEESCCEEEEEEEESSCCCTTCEEEC----------SEEEEEEESHHHHHHHHHHHHTCCEEEEEEECSSHHHH
T ss_pred CCCCcEEEECcceEEEeeccccCCCccceeec----------ccceeccCccHHHHHHHHHHcCCceEEEEEecCchHHH
Confidence 46778999999999999999998877654321 12345678889999999999999999999999999999
Q ss_pred HHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEEC-CCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEE
Q 011562 159 FLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVD-PSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVL 237 (483)
Q Consensus 159 ~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v 237 (483)
++++.|+++||+++++...++. +|+.++++++ ++|++.++...........+.+. ...+..+++|
T Consensus 85 ~l~~~L~~~GV~~~~v~~~~~~--------~T~~~~~~v~~~~g~r~~~~~~~~~~~~~~~~~~------~~~l~~~~~v 150 (312)
T 2hlz_A 85 FVLDDLRRYSVDLRYTVFQTTG--------SVPIATVIINEASGSRTILYYDRSLPDVSATDFE------KVDLTQFKWI 150 (312)
T ss_dssp HHHHHHHHTTCBCTTEEECSSC--------CCCEEEEEEETTTCCEEEEEECCCCCCCCHHHHH------TSCGGGEEEE
T ss_pred HHHHHHHHcCCCCccceeccCC--------CCCeEEEEEECCCCceEEEecCCccccCCHHHhh------HhhhccCCEE
Confidence 9999999999999998765432 3666667665 46777765433222111111111 1146789999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHHc--------CCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhh
Q 011562 238 FCNGYGFDELSPALIISALEYAAQV--------GTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLT 309 (483)
Q Consensus 238 ~isG~~~~~~~~~~~~~li~~a~~~--------g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~ 309 (483)
|++++ .++...++++.++++ ++++++|+.... +.+.++++++|++++|++|++.+
T Consensus 151 ~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~~~~v~~d~~~~~-----------~~~~~~l~~~dil~~n~~ea~~l- 213 (312)
T 2hlz_A 151 HIEGR-----NASEQVKMLQRIDAHNTRQPPEQKIRVSVEVEKPR-----------EELFQLFGYGDVVFVSKDVAKHL- 213 (312)
T ss_dssp EEECS-----SHHHHHHHHHHHHHHHTTSCGGGCCEEEEEECSCC-----------GGGGGGGGSSSEEEECHHHHHHT-
T ss_pred EEecc-----CHHHHHHHHHHHHHhcccccCCCCeEEEEEcccch-----------HHHHHHHhcCCEEEEcHHHHHHc-
Confidence 99976 346677888888776 789999986421 23457899999999999999987
Q ss_pred CCCCHHHHHHHHHHcCC-CccEEEEEeCCCcEEEEEC-CeeEEecCc-cccccCCCCchHHHHHHHHHHHHcCCCHHHHH
Q 011562 310 GLRNPITAGQELLRKGL-RTKWVVVKMGPRGSILVTK-SSISCAPAF-KVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTL 386 (483)
Q Consensus 310 g~~~~~~~~~~l~~~g~-~~~~vVvT~G~~G~~~~~~-~~~~~vpa~-~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al 386 (483)
|..+..++++.+.+.+. + +.||||+|++|++++++ +..+++|++ .++++||+||||+|+|||+++|++|+++++|+
T Consensus 214 g~~~~~~~~~~l~~~~~~g-~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~vvdt~GAGDaf~a~~~~~l~~g~~~~~a~ 292 (312)
T 2hlz_A 214 GFQSAEEALRGLYGRVRKG-AVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEAL 292 (312)
T ss_dssp TCCSHHHHHHHHGGGSCTT-CEEEEECGGGCEEEECTTCCEEEECCCCCSSCCCCTTHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCC-CEEEEEecccCeEEEccCCCEEECCCCCCCCcccCCCchHHHHHHHHHHHHcCCCHHHHH
Confidence 77788888888877642 2 67999999999999875 457889986 46899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCC
Q 011562 387 TIANAVGAATAMGCGA 402 (483)
Q Consensus 387 ~~A~aaAa~~v~~~G~ 402 (483)
++|+++|+.++++.|+
T Consensus 293 ~~a~~~aa~~v~~~G~ 308 (312)
T 2hlz_A 293 RFGCQVAGKKCGLQGF 308 (312)
T ss_dssp HHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHHhhcCc
Confidence 9999999999999985
No 45
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=2.8e-39 Score=326.45 Aligned_cols=303 Identities=19% Similarity=0.267 Sum_probs=237.0
Q ss_pred CCccEEEECCceeEEEecCCCCCCCCh--hhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhh
Q 011562 80 KSIDVATLGNLCVDIVLNVPQLPPPSR--DARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYG 157 (483)
Q Consensus 80 ~~~~VlviG~~~iD~~~~v~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g 157 (483)
..|+|+++|+.+.++.. +++ ..+. ......+||+++|+|++|++||.++.++|.+|+|.+|
T Consensus 11 ~~~~~~~~ge~l~~~~~-------~~~~~~~~~----------~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G 73 (351)
T 2afb_A 11 HHMKVVTFGEIMLRLSP-------PDHKRIFQT----------DSFDVTYGGAEANVAAFLAQMGLDAYFVTKLPNNPLG 73 (351)
T ss_dssp CCCEEEEESCCEEEEEC-------STTCCGGGC----------SEEEEEEECHHHHHHHHHHHTTSEEEEEEEECSSHHH
T ss_pred ccceEEEechhhheecC-------CCCcccccc----------ceeeEecCChHHHHHHHHHHcCCCeEEEEEeCCCHHH
Confidence 57899999999988653 221 1100 1334567888999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCccccc--ccCC-CCChhhhhhhhccHHHHHhhcCC
Q 011562 158 RFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCS--RADF-SKEPAFSWMNKLSAEVKTAIKHS 234 (483)
Q Consensus 158 ~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~--~~~~-~~~~~~~~~~~l~~~~~~~l~~~ 234 (483)
+++++.|++.||+++++... +. +|+.+++.++.++++.++. +... ......+ .+. ....++++
T Consensus 74 ~~i~~~L~~~gv~~~~v~~~-~~--------~t~~~~v~~~~~~r~~~v~~~~~~~a~~~~~~~---~~~--~~~~~~~~ 139 (351)
T 2afb_A 74 DAAAGHLRKFGVKTDYIARG-GN--------RIGIYFLEIGASQRPSKVVYDRAHSAISEAKRE---DFD--WEKILDGA 139 (351)
T ss_dssp HHHHHHHHHTTCBCTTEEEC-SS--------CCCEEEEECCBTTBCCEEEEECTTCTTTTCCGG---GCC--HHHHTTTE
T ss_pred HHHHHHHHHcCCcceeEEEC-CC--------cceEEEEEecCCCCcceEEEeCCCChhhhCChh---hCC--HHHhhcCC
Confidence 99999999999999998753 22 3777777766544443322 1111 0011111 111 12346889
Q ss_pred cEEEEecCCCC--CCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC
Q 011562 235 KVLFCNGYGFD--ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR 312 (483)
Q Consensus 235 ~~v~isG~~~~--~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~ 312 (483)
++||++|+.+. +...+.+.++++.+++.|+++++||+.+... |. ....++.+.++++++|++++|++|+..|+|..
T Consensus 140 ~~v~~~g~~~~~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~-~~-~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~ 217 (351)
T 2afb_A 140 RWFHFSGITPPLGKELPLILEDALKVANEKGVTVSCDLNYRARL-WT-KEEAQKVMIPFMEYVDVLIANEEDIEKVLGIS 217 (351)
T ss_dssp EEEEEETTSGGGSTTHHHHHHHHHHHHHHHTCEEEEECCCCTTT-CC-HHHHHHHHHHHGGGCSEEEECHHHHHHHHCCC
T ss_pred CEEEEeCcccccChhHHHHHHHHHHHHHHcCCEEEEeCCCchhc-CC-hHHHHHHHHHHHhhCCEEEecHHHHHHHhCCC
Confidence 99999998752 3335788899999999999999999977543 32 12445678899999999999999999999865
Q ss_pred C--------------HHHHHHHHHHc-CCCccEEEEEeCCCcE--------EEEECCeeEEecCccccccCCCCchHHHH
Q 011562 313 N--------------PITAGQELLRK-GLRTKWVVVKMGPRGS--------ILVTKSSISCAPAFKVNVTDTVGCGDSFV 369 (483)
Q Consensus 313 ~--------------~~~~~~~l~~~-g~~~~~vVvT~G~~G~--------~~~~~~~~~~vpa~~v~vvDttGAGDaF~ 369 (483)
. +.++++.|++. |+ +.||||+|++|+ +++++++.+++|+++++++|||||||+|+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~--~~vvvT~G~~G~~~~~~~g~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ 295 (351)
T 2afb_A 218 VEGLDLKTGKLNREAYAKIAEEVTRKYNF--KTVGITLRESISATVNYWSVMVFENGQPHFSNRYEIHIVDRVGAGDSFA 295 (351)
T ss_dssp CSCC-------CHHHHHHHHHHHHHHHCC--SEEEEEEEECSCSSEEEEEEEEEETTEEEECCCEEEECSCCTTHHHHHH
T ss_pred cccccccccccchhhHHHHHHHHHHHcCC--CEEEEEeCCcCccccccceeEEEeCCcEEEcCCCCCccCCCCCchHHHH
Confidence 3 45677888775 76 789999999975 77778888899999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHh
Q 011562 370 AAVAFGFIHNMPTVNTLTIANAVGAATAMGCGAGRNVATLERVIELMRA 418 (483)
Q Consensus 370 Ag~l~gl~~g~~l~~al~~A~aaAa~~v~~~G~~~~~p~~~ev~~~l~~ 418 (483)
|||+++|++|+++++|+++|+++|+.++++.|+.. .|+++++++++++
T Consensus 296 ag~~~~l~~g~~l~~a~~~A~~~aa~~v~~~G~~~-~~~~~ev~~~l~~ 343 (351)
T 2afb_A 296 GALIYGSLMGFDSQKKAEFAAAASCLKHTIPGDFV-VLSIEEIEKLASG 343 (351)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTSSSSSC-CCCHHHHHHHHTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHhc
Confidence 99999999999999999999999999999999754 8999999998864
No 46
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=100.00 E-value=5.4e-40 Score=323.70 Aligned_cols=278 Identities=22% Similarity=0.283 Sum_probs=218.6
Q ss_pred CccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHH
Q 011562 81 SIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (483)
Q Consensus 81 ~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i 160 (483)
+++|+|+|++++|++ |. ...+||++.|+|+++++||.++.++|.+|+|.+|+++
T Consensus 3 ~~~v~viG~~~~D~~------p~--------------------~~~~GG~~~N~A~~la~LG~~~~~~~~vG~D~~g~~~ 56 (296)
T 2qhp_A 3 NNIIVGMGEALWDVL------PE--------------------GKKIGGAPANFAYHVSQFGFDSRVVSAVGNDELGDEI 56 (296)
T ss_dssp CCEEEEESCCEEEEE------TT--------------------EEEEECHHHHHHHHHHHTTCEEEEEEEEESSHHHHHH
T ss_pred cceEEEEchhheEec------CC--------------------CCCCCCHHHHHHHHHHHcCCCeeEEEEeCCChHHHHH
Confidence 458999999999997 11 1235888999999999999999999999999999999
Q ss_pred HHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEe
Q 011562 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCN 240 (483)
Q Consensus 161 ~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~is 240 (483)
++.|+++|| +++.+.++. +|+.+++.++++|++.+....+. ..+.+. ..+...+.++++|++|++
T Consensus 57 ~~~l~~~gv--~~v~~~~~~--------~T~~~~v~~~~~g~~~~~~~~~~----~~~~l~-~~~~~~~~~~~~~~v~~g 121 (296)
T 2qhp_A 57 MEVFKEKQL--KNQIERVDY--------PTGTVQVTLDDEGVPCYEIKEGV----AWDNIP-FTDELKRLALNTRAVCFG 121 (296)
T ss_dssp HHHHHHTTC--CEEEEEESS--------CCEEEEEC------CCEEECSSC----GGGCCC-CCHHHHHHHHTEEEEEEC
T ss_pred HHHHHHcCC--CEEeecCCC--------CceEEEEEECCCCCEEEEEecCC----hhhhCC-cchhhHhhhcCCCEEEEC
Confidence 999999999 666554333 48888888887787765432221 111110 123344567889999987
Q ss_pred cCCC-CCCCHHHHHHHHHHHHH-cCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCC-----CC
Q 011562 241 GYGF-DELSPALIISALEYAAQ-VGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL-----RN 313 (483)
Q Consensus 241 G~~~-~~~~~~~~~~li~~a~~-~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~-----~~ 313 (483)
++.. .+.+.+.+.++++.+++ ++.++++||+.+...+ . .+.+.++++++|++++|++|++.|+|. .+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~D~~~~~~~~-~-----~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~~ 195 (296)
T 2qhp_A 122 SLAQRNEVSRATINRFLDTMPDIDGQLKIFDINLRQDFY-T-----KEVLRESFKRCNILKINDEELVTISRMFGYPGID 195 (296)
T ss_dssp SGGGSSHHHHHHHHHHHHHSCCTTSCEEEEECCCCTTCC-C-----HHHHHHHHHHCSEEEEEHHHHHHHHHHTTCTTSC
T ss_pred ChHhcChHHHHHHHHHHHHHHhcCCCEEEEECcCCcccc-C-----HHHHHHHHHHCCEEECCHHHHHHHhcccCCCCCC
Confidence 6532 22345678888888876 6899999998765432 1 346678899999999999999999873 46
Q ss_pred HHHHHHHHHHc-CCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011562 314 PITAGQELLRK-GLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAV 392 (483)
Q Consensus 314 ~~~~~~~l~~~-g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aa 392 (483)
+.+++++++++ |+ +.||||+|++|++++++++.+++|+++++++||+||||+|+|||+++|++|+++++|+++|+++
T Consensus 196 ~~~~~~~l~~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~vdttGAGD~f~a~~~~~l~~g~~~~~a~~~a~~~ 273 (296)
T 2qhp_A 196 LQDKCWILLAKYNL--KMLILTCGINGSYVFTPGVVSFQETPKVPVADTVGAGDSFTAAFCASILNGKSVPEAHKLAVEV 273 (296)
T ss_dssp HHHHHHHHHHHTTC--SEEEEECGGGCEEEEETTEEEEECCCCCCCSCCTTHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CEEEEeecCCCeEEEECCeEEEeCCCCCccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 78888989885 66 7899999999999999888999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCCC
Q 011562 393 GAATAMGCGAGRNVA 407 (483)
Q Consensus 393 Aa~~v~~~G~~~~~p 407 (483)
|+.++++.|+....|
T Consensus 274 aa~~v~~~G~~~~~~ 288 (296)
T 2qhp_A 274 SAYVCTQSGAMPELP 288 (296)
T ss_dssp HHHHHTSSSSSCCCC
T ss_pred HHHHHcCCCCCCCCc
Confidence 999999999865444
No 47
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728}
Probab=100.00 E-value=2e-41 Score=335.74 Aligned_cols=280 Identities=19% Similarity=0.222 Sum_probs=224.4
Q ss_pred CCccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHH
Q 011562 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (483)
Q Consensus 80 ~~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~ 159 (483)
++++|+|+|++++|++..++++| +++..+. ......+||++.|+|+++++||.++.++|.+|+| +|++
T Consensus 19 ~~~~v~viG~~~iD~~~~~~~~p-~g~~~~~----------~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D-~G~~ 86 (306)
T 3bf5_A 19 GMRFLAYFGHLNIDVLISVDSIP-REGSVNV----------KDLRPRFGGTAGNFAIVAQKFRIPFDLYSAVGMK-THRE 86 (306)
T ss_dssp CCEEEEEECCCEEEEEEECSCCC-SSEEEEC----------SEEEEEEEHHHHHHHHHHHHTTCCCEEEEEEETT-TCHH
T ss_pred CCCcEEEECCceEEEEEecCCCC-CCceEEC----------cceEecCCChHHHHHHHHHHcCCCeEEEEEEeCC-hHHH
Confidence 56789999999999999999998 5553321 1234556888999999999999999999999999 9999
Q ss_pred HHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhh-cCCcEEE
Q 011562 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAI-KHSKVLF 238 (483)
Q Consensus 160 i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l-~~~~~v~ 238 (483)
+++.|++.||+++++.+.++. +|+.+++++++ |++.++..... . ..+. +.+ .+++++|
T Consensus 87 i~~~L~~~gV~~~~v~~~~~~--------~T~~~~~~~~~-g~r~~~~~~ga----~-~~~~-------~~l~~~~~~v~ 145 (306)
T 3bf5_A 87 YLAMIESMGINTGHVEKFEDE--------SGPICYIATDG-KKQVSFMHQGA----M-AAWA-------PQLADEYEYVH 145 (306)
T ss_dssp HHHHHHHTTCCCTTEEEETTC--------CCSEEEEEECS-SCEEEEEECTH----H-HHCC-------CCCCSCEEEEE
T ss_pred HHHHHHHcCCCchheEecCCC--------CCceEEEEEcC-CeeEEEEeCCh----h-hhhh-------HhhcCCCCEEE
Confidence 999999999999998655443 38889999988 87766443211 1 1111 112 6789999
Q ss_pred EecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHHHHH
Q 011562 239 CNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAG 318 (483)
Q Consensus 239 isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~ 318 (483)
++++. .+.++++.+++ ++++||+++. +.. ..+.+.++++++|++++|++|++.++|..+..+.
T Consensus 146 ~~~~~-------~~~~~~~~a~~---~v~~D~~~~~---~~~---~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~- 208 (306)
T 3bf5_A 146 FSTGP-------NYLDMAKSIRS---KIIFDPSQEI---HKY---SKDELKKFHEISYMSIFNDHEYRVFREMTGLSSP- 208 (306)
T ss_dssp ECSSS-------SHHHHHHHCCS---EEEECCGGGG---GGS---CHHHHHHHHHHCSEEEEEHHHHHHHHHHHCCSSC-
T ss_pred ECChH-------HHHHHHHHhCC---cEEEcCchhh---hhc---cHHHHHHHHhcCCEEEcCHHHHHHHhCCCCcCcc-
Confidence 99754 45667776654 9999998532 111 1456778899999999999999998764321111
Q ss_pred HHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Q 011562 319 QELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAM 398 (483)
Q Consensus 319 ~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~ 398 (483)
. . . ||||+|++|++++++++.+++|+++++ +|||||||+|+|||+++|++|+++++|+++|+++|+.+++
T Consensus 209 -----~-l--~-vvvT~G~~Ga~~~~~~~~~~~~~~~v~-vDttGAGDaF~ag~~~~l~~g~~~~~a~~~A~~~aa~~v~ 278 (306)
T 3bf5_A 209 -----K-V--T-TIVTNGERGSSLFMDGKKYDFPAIPSS-GDTVGAGDSFRAGLYLALYNRRSIEKGMIYGTIIAHHVID 278 (306)
T ss_dssp -----S-S--C-EEEEEGGGEEEEEETTEEEEEECCCCC-SCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred -----c-E--E-EEEeecccCeEEEeCCcEEEecCCcCC-CCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 1 1 2 999999999999999888999999999 9999999999999999999999999999999999999999
Q ss_pred c--cCCCCCCCCHHHHHHHHHhc
Q 011562 399 G--CGAGRNVATLERVIELMRAS 419 (483)
Q Consensus 399 ~--~G~~~~~p~~~ev~~~l~~~ 419 (483)
+ .|+...+|+++++++++++.
T Consensus 279 ~~~~G~~~~~p~~~ev~~~~~~~ 301 (306)
T 3bf5_A 279 DGIENFSLNMEDLERETENYRRM 301 (306)
T ss_dssp HCSTTCCCCHHHHHHHHHHHHHH
T ss_pred cCCccccccCCCHHHHHHHHHhh
Confidence 9 99877789999999998764
No 48
>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum}
Probab=100.00 E-value=4.5e-40 Score=327.13 Aligned_cols=298 Identities=19% Similarity=0.268 Sum_probs=226.4
Q ss_pred CccEEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCC-ceEEEEEecCChhhHH
Q 011562 81 SIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGL-DCVTIGHVGNEIYGRF 159 (483)
Q Consensus 81 ~~~VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~-~v~lig~vG~D~~g~~ 159 (483)
+++|+|+|++++|++... . + .....+||++.|+|+++++||. ++.++|.+|+| +|++
T Consensus 2 ~~~ilviG~~~iD~~~~~----~-~----------------~~~~~~GG~~~NvA~~la~LG~~~~~~ig~vG~D-~g~~ 59 (313)
T 3kd6_A 2 SLSLLVIGSLAFDDIETP----F-G----------------RSDNTLGGSSTYIALSASYFTDEPIRMVGVVGSD-FGKE 59 (313)
T ss_dssp -CCEEEESCCEEEEEECS----S-C----------------EEEEEEECHHHHHHHHHTTTCSSCEEEEEEEETT-SCHH
T ss_pred CccEEEEeEEEEeeecCC----C-C----------------cccccCCCHHHHHHHHHHHhCCCceEEEEecCCC-cHHH
Confidence 368999999999999642 1 1 1244568999999999999999 99999999999 9999
Q ss_pred HHHHHHHcCCCccceeecCCCCccccCcccceeE--EEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEE
Q 011562 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLC--WVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVL 237 (483)
Q Consensus 160 i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~--~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v 237 (483)
+++.|+++||+++++.+.++.+ |... ...++.++++.+...... ...+...+.+.+++++++
T Consensus 60 ~~~~L~~~gVd~~~v~~~~~~~--------T~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~v 123 (313)
T 3kd6_A 60 HFDLLHAKNIDTRGIQVIEDGK--------TFRWAGRYHYDMNTRDTLDTQLNV--------FAEFDPHVPQYYRDSKFV 123 (313)
T ss_dssp HHHHHHHTTEEEEEEEEETTCC--------CEEEEEEECTTSSCEEEEEEECGG--------GTTCCCCCCGGGTTCSEE
T ss_pred HHHHHHHcCCCccceEEcCCCC--------eeeeeeeeeccccccceeecccch--------HhhcCccchHHHccCCEE
Confidence 9999999999999998766443 2110 011222222222111100 011111122356889999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHHHH
Q 011562 238 FCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITA 317 (483)
Q Consensus 238 ~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~ 317 (483)
|+++ ++++...++++.+ +.+.++++||.. +|. ....+.+.++++++|++++|++|++.|+|..+..++
T Consensus 124 ~~~~-----~~~~~~~~~~~~~-~~~~~v~~Dp~~----~~~--~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~ 191 (313)
T 3kd6_A 124 CLGN-----IDPELQLKVLDQI-DDPKLVVCDTMN----FWI--EGKPEELKKVLARVDVFIVNDSEARLLSGDPNLVKT 191 (313)
T ss_dssp EECS-----SCHHHHHHHHTTC-SSCSEEEEECCH----HHH--HHCHHHHHHHHTTCSEEEEEHHHHHHHHSCSCHHHH
T ss_pred EEcC-----CCHHHHHHHHHHH-hhCCEEEEcChh----hhh--hhhHHHHHHHHhcCCEEEeCHHHHHHHhCCCCHHHH
Confidence 9963 4566677777777 678899999832 121 233567788999999999999999999999999999
Q ss_pred HHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccc-cccCCCCchHHHHHHHHHHHHcCC-----CHHHHHHHHHH
Q 011562 318 GQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKV-NVTDTVGCGDSFVAAVAFGFIHNM-----PTVNTLTIANA 391 (483)
Q Consensus 318 ~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v-~vvDttGAGDaF~Ag~l~gl~~g~-----~l~~al~~A~a 391 (483)
++.|++.|+ +.||||+|++|++++++++.+++|++++ +++||+||||+|+|||+++|++|+ ++++|+++|++
T Consensus 192 ~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGDaf~a~~~~~l~~g~~~~~~~l~~a~~~a~~ 269 (313)
T 3kd6_A 192 ARIIREMGP--KTLIIKKGEHGALLFTDNGIFAAPAFPLESIYDPTGAGDTFAGGFIGHLARCGNTSEAEMRKAVLYGSA 269 (313)
T ss_dssp HHHHHTTSC--SEEEEECTTSCEEEEETTEEEEECCCTTCCCSCCTTHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCC--CEEEEeeCCCcEEEEECCceEEeCCCCCCCcCCCCCccHHHHHHHHHHHHcCCCccccCHHHHHHHHHH
Confidence 999998776 7899999999999999999999999998 799999999999999999999998 89999999999
Q ss_pred HHHHHhcccCCCCC-CCCHHHHHHHHHhcC--CCcchhhHHH
Q 011562 392 VGAATAMGCGAGRN-VATLERVIELMRASN--LNEDNAFWNE 430 (483)
Q Consensus 392 aAa~~v~~~G~~~~-~p~~~ev~~~l~~~~--~~~~~~~~~~ 430 (483)
+|+.++++.|+... .|+++|+++++++.. +...+..|.+
T Consensus 270 ~aa~~v~~~G~~~~~~~~~~ev~~~l~~~~~~~~~~~~~~~~ 311 (313)
T 3kd6_A 270 MASFCVEQFGPYRYNDLDLLEVDDRYQSFLELSRIEEGHHHH 311 (313)
T ss_dssp HHHHHTTSSTTGGGGTCCHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHeecCCCCCCCCCHHHHHHHHHHHHHhhhhhhccccC
Confidence 99999999998642 589999999997653 3333445554
No 49
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A*
Probab=100.00 E-value=2.8e-39 Score=330.36 Aligned_cols=298 Identities=17% Similarity=0.243 Sum_probs=229.7
Q ss_pred CCccEEEECCceeEEEecCCC-C-----CCCChhhhhH-----HhhhhccCCCCCccccCCcHHHHHHHHHHc---CCce
Q 011562 80 KSIDVATLGNLCVDIVLNVPQ-L-----PPPSRDARKA-----YMDQLSASPPDKQYWEAGGNCNVAIAAARL---GLDC 145 (483)
Q Consensus 80 ~~~~VlviG~~~iD~~~~v~~-~-----p~~~~~~~~~-----~~~~~~~~~~~~~~~~GGg~~NvA~~larL---G~~v 145 (483)
++++|+|+|++++|+++.++. + +.+++..... ....+ ........+||+++|+|+++++| |.++
T Consensus 31 ~~~~vlviG~~~lD~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~--~~~~~~~~~GG~~~NvA~~la~Lg~~g~~v 108 (383)
T 2abs_A 31 GPMRVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQMRIYSTL--DQFNPTSLPGGSALNSVRVVQKLLRKPGSA 108 (383)
T ss_dssp CCCCEEEECCCEEEEEEECCHHHHHHTTCCTTCEEECCGGGGGGGGTG--GGGCCEEEEESHHHHHHHHHHHHHCSTTSE
T ss_pred CCceEEEECcchheeEeccCHHHHHhcCCCCCceeechhhHHHHHHhh--ccccceeeCCChHHHHHHHHHHhccCCCcE
Confidence 356899999999999999876 2 4444322100 00000 01134556788899999999999 8999
Q ss_pred EEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccH
Q 011562 146 VTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSA 225 (483)
Q Consensus 146 ~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~ 225 (483)
.++|.+|+|.+|+++++.|+++||+++++.. .+. +|+.++++++ ++++.++....... .+. ..+
T Consensus 109 ~~ig~vG~D~~G~~i~~~L~~~GV~~~~v~~-~~~--------~T~~~~~~~~-~g~r~~~~~~~a~~-----~l~-~~~ 172 (383)
T 2abs_A 109 GYMGAIGDDPRGQVLKELCDKEGLATRFMVA-PGQ--------STGVCAVLIN-EKERTLCTHLGACG-----SFR-LPE 172 (383)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHTCEEEEEEC-TTC--------CCEEEEEEEE-TTEEEEEEECGGGG-----GCC-CCT
T ss_pred EEEEEecCChhHHHHHHHHHHcCCceeeeec-CCC--------CCeEEEEEEc-CCceeEeeccChhh-----hCC-hhh
Confidence 9999999999999999999999999999863 222 4888888887 56776543221111 010 012
Q ss_pred HHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHH-cCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHH
Q 011562 226 EVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQ-VGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDE 304 (483)
Q Consensus 226 ~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~-~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~E 304 (483)
...+.+.+++++|++|+.+ ..+.+.+.++++.+++ +|+++++|+... ++ .....+.+.++++++|++++|++|
T Consensus 173 ~~~~~l~~~~~v~~~g~~~-~~~~~~~~~~~~~a~~~~g~~v~~d~~~~---~~--~~~~~~~l~~ll~~~dil~pN~~E 246 (383)
T 2abs_A 173 DWTTFASGALIFYATAYTL-TATPKNALEVAGYAHGIPNAIFTLNLSAP---FC--VELYKDAMQSLLLHTNILFGNEEE 246 (383)
T ss_dssp THHHHTTTCCEEEEEGGGG-TTCHHHHHHHHHHHHTSTTCEEEEECCCH---HH--HHHCHHHHHHHHHTCSEEEEEHHH
T ss_pred hhHHHhhcCCEEEEeeecc-cCCHHHHHHHHHHHHHhcCCEEEEeCCcH---HH--HHHHHHHHHHHHhhCCEEeCCHHH
Confidence 2334578999999999876 3677899999999999 999999998531 11 123345677899999999999999
Q ss_pred HHHhhCC-----------------CCHHHHHHHHHHc-------CCCccEEEEEeCCCcEEEE-----ECCeeEEecCcc
Q 011562 305 AESLTGL-----------------RNPITAGQELLRK-------GLRTKWVVVKMGPRGSILV-----TKSSISCAPAFK 355 (483)
Q Consensus 305 a~~l~g~-----------------~~~~~~~~~l~~~-------g~~~~~vVvT~G~~G~~~~-----~~~~~~~vpa~~ 355 (483)
++.|++. .+..++++.|++. |+ +.||||+|++|++++ .+++.+++|+++
T Consensus 247 a~~L~g~~~~~~~~~~~~s~~~~~~~~~~~a~~l~~~~~~~~~~g~--~~VvvT~G~~Ga~~~~~~~~~~~~~~~~~~~~ 324 (383)
T 2abs_A 247 FAHLAKVHNLVAAEKTALSTANKEHAVEVCTGALRLLTAGQNTSAT--KLVVMTRGHNPVIAAEQTADGTVVVHEVGVPV 324 (383)
T ss_dssp HHHHHHHHTCC----------CHHHHHHHHHHHHHHHHTTCCCSSC--CEEEEECTTSCEEEEEECTTSCEEEEEECCCC
T ss_pred HHHHhcccCcccccccccccccccccHHHHHHHHHhccccccccCC--CEEEEEcCCCCeEEEEeecCCCCeEEEecCcc
Confidence 9999752 1345677777763 65 789999999999998 556678899887
Q ss_pred c---cccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccCCC
Q 011562 356 V---NVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAMGCGAG 403 (483)
Q Consensus 356 v---~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~~~G~~ 403 (483)
+ +++||+||||+|+|||+++|++|+++++|+++|+++|+.++++.|+.
T Consensus 325 v~~~~vvDttGAGDaF~ag~~~~l~~g~~l~~al~~A~a~aa~~v~~~Ga~ 375 (383)
T 2abs_A 325 VAAEKIVDTNGAGDAFVGGFLYALSQGKTVKQCIMCGNACAQDVIQHVGFS 375 (383)
T ss_dssp CCGGGCCCCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSSCC
T ss_pred CCcCCcCcCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCcc
Confidence 7 89999999999999999999999999999999999999999999975
No 50
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=1.9e-35 Score=291.75 Aligned_cols=277 Identities=17% Similarity=0.144 Sum_probs=208.3
Q ss_pred EEEECCceeEEEecCCCCCCCChhhhhHHhhhhccCCCCCccccCCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHHH
Q 011562 84 VATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDV 163 (483)
Q Consensus 84 VlviG~~~iD~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~~ 163 (483)
|.++|.+..|.+.... .....+||++.|+|+++++||.++.++|.+|+|. +.+++.
T Consensus 14 ~~~~~~~~~~~~~~~~----------------------~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~--~~~~~~ 69 (298)
T 1vk4_A 14 ITFIGHVSKDVNVVDG----------------------KREIAYGGGVVMGAITSSLLGVKTKVITKCTRED--VSKFSF 69 (298)
T ss_dssp EEEECCCEEEEEEETT----------------------EEEEEEECHHHHHHHHHHHTTCEEEEEEEECTTT--GGGGTT
T ss_pred EEEeccccCceEeecC----------------------eEEEecCCHHHHHHHHHHHcCCceEEEEEEcCCH--HHHHHH
Confidence 8899999999987632 2234568889999999999999999999999996 778899
Q ss_pred HHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecCC
Q 011562 164 LQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYG 243 (483)
Q Consensus 164 L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~~ 243 (483)
|++.||+++.+.. + .+|+.+.++ +++|++.+............+.+ .. ..++++|++++.
T Consensus 70 L~~~gVd~~~v~~-~---------~~t~~~~i~-~~~g~~~~~~~~~~~~~l~~~~~--------~~-~~~~~v~~~~~~ 129 (298)
T 1vk4_A 70 LRDNGVEVVFLKS-P---------RTTSIENRY-GSDPDTRESFLISAADPFTESDL--------AF-IEGEAVHINPLW 129 (298)
T ss_dssp TGGGTCEEEEEEC-S---------SCEEEEEEC------CCEEEEEECCCCCCGGGG--------GG-CCSSEEEECCSS
T ss_pred HHHcCCceEEEec-C---------CCcEEEEEE-cCCCCeeEEEeccccccCCHHHc--------Cc-CCCCEEEECCcc
Confidence 9999999998753 1 136655554 44566554332221111111111 11 578999998775
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCC--hHHHHHHHhhhcCCCEEEcCHHHHHHhhCCCCHHHHHHHH
Q 011562 244 FDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGT--PEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQEL 321 (483)
Q Consensus 244 ~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~--~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~~l 321 (483)
..+.. .++++.++++|+++++|+++....+|... +...+.+.++++++|++++|++|++.|+|..++.++++.|
T Consensus 130 ~~~~~----~~~~~~~~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~~~~l 205 (298)
T 1vk4_A 130 YGEFP----EDLIPVLRRKVMFLSADAQGFVRVPENEKLVYRDWEMKEKYLKYLDLFKVDSREAETLTGTNDLRESCRII 205 (298)
T ss_dssp TTSSC----GGGHHHHHHHCSEEEEETHHHHEEEETTEEEECCCTTHHHHGGGCSEEEEEHHHHHHHHSCSCHHHHHHHH
T ss_pred ccccc----HHHHHHHHHcCCEEEEecCccccccccccccccchHHHHhhcccCCEEecCHHHHHHHhCCCCHHHHHHHH
Confidence 44433 35677788889999999973110000000 0001134678899999999999999999998999999999
Q ss_pred HHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhccc
Q 011562 322 LRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIH-NMPTVNTLTIANAVGAATAMGC 400 (483)
Q Consensus 322 ~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~-g~~l~~al~~A~aaAa~~v~~~ 400 (483)
++.|+ +.||||+ ++|++++++ +.+++|+++++++|||||||+|+|||+++|++ |+++++|+++|+++|+.++++.
T Consensus 206 ~~~g~--~~vvvT~-~~G~~~~~~-~~~~~~~~~v~vvDttGAGDaF~a~~~~~l~~~g~~~~~a~~~A~a~aa~~v~~~ 281 (298)
T 1vk4_A 206 RSFGA--KIILATH-ASGVIVFDG-NFYEASFRSWSLEGRTGRGDTCTAAFLVGFVFKKMSIEKATKFAAAVTSVKMRHP 281 (298)
T ss_dssp HHTTC--SSEEEEE-TTEEEEESS-SEEEEECCCSSGGGGTTHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTTSS
T ss_pred HhcCC--CEEEEEc-CCCcEEEeC-CEEEeccCCcccCCCcCccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccC
Confidence 99876 7799999 999999887 78899999999999999999999999999999 9999999999999999999999
Q ss_pred CCCCCCCCHHHHH
Q 011562 401 GAGRNVATLERVI 413 (483)
Q Consensus 401 G~~~~~p~~~ev~ 413 (483)
|+... |+.+|+.
T Consensus 282 G~~~~-~~~~el~ 293 (298)
T 1vk4_A 282 GPLRR-EDLEAIS 293 (298)
T ss_dssp SSCCG-GGGGGCC
T ss_pred CCCCC-CCHHHHh
Confidence 97643 6666653
No 51
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal 5'-phosphate, vitamin B6, phosphorylation, transferase; 2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*
Probab=99.91 E-value=5.7e-24 Score=207.87 Aligned_cols=230 Identities=20% Similarity=0.271 Sum_probs=160.2
Q ss_pred cCCceEE-EEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhh
Q 011562 141 LGLDCVT-IGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSW 219 (483)
Q Consensus 141 LG~~v~l-ig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~ 219 (483)
||..... +|.+|.| .....|++.||++..+. |. ++.+..+.+.+. .. ....++
T Consensus 19 L~i~~~~~~g~~G~d----~~~~~l~~~Gv~~~~v~--------------t~---i~~~~~g~~~~~-g~----~~~~~~ 72 (283)
T 2ddm_A 19 VAVQSQVVYGSVGNS----IAVPAIKQNGLNVFAVP--------------TV---LLSNTPHYDTFY-GG----AIPDEW 72 (283)
T ss_dssp EEEEEEESSSSSTHH----HHHHHHHHTTCCEEEEE--------------EE---EESSCTTSSCCC-EE----ECCHHH
T ss_pred EEEecccCCCcchHH----HHHHHHHHcCCeeeEEe--------------EE---EeccCCCcCcee-ee----eCCHHH
Confidence 4444444 6677776 34578899999998873 21 233434433311 00 111222
Q ss_pred hhhccHHHHH--hhcCCcEEEEecCCCCCCCHHHHHHHHHHHHH--cCCeEEEcCCCCCC--CCCCCChHHHHHHHhhhc
Q 011562 220 MNKLSAEVKT--AIKHSKVLFCNGYGFDELSPALIISALEYAAQ--VGTSIFFDPGPRGK--SLSSGTPEEQRALSYFLS 293 (483)
Q Consensus 220 ~~~l~~~~~~--~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~--~g~~v~~D~~~~~~--~l~~~~~~~~~~l~~ll~ 293 (483)
+....+.+.+ .++++++++++ +.......+.+.++++.+++ .|+++++||+.+.. ..|............+++
T Consensus 73 ~~~~~~~l~~~~~~~~~~~v~~G-~l~~~~~~~~~~~~l~~a~~~~~g~~vv~Dp~~~~~~~~~~~~~~~~~~~~~~ll~ 151 (283)
T 2ddm_A 73 FSGYLRALQERDALRQLRAVTTG-YMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLP 151 (283)
T ss_dssp HHHHHHHHHHTTCCTTCCEEEEC-CCSCHHHHHHHHHHHHHHHTTCTTCEEEECCCCEETTTEECSCTTHHHHHHHTTGG
T ss_pred HHHHHHHHHhcCCcccCCEEEEC-CcCCHHHHHHHHHHHHHHHhcCCCCeEEECCcccCCCCCcccCHHHHHHHHHhhhh
Confidence 2222233333 45678999885 33222234677788888887 79999999986641 122211112223356899
Q ss_pred CCCEEEcCHHHHHHhhCCC-----CHHHHHHHHHHcCCCccEEEEEeCCC-------cEEEEECCeeEEecCccccccCC
Q 011562 294 TSDVLLLTSDEAESLTGLR-----NPITAGQELLRKGLRTKWVVVKMGPR-------GSILVTKSSISCAPAFKVNVTDT 361 (483)
Q Consensus 294 ~~dil~~N~~Ea~~l~g~~-----~~~~~~~~l~~~g~~~~~vVvT~G~~-------G~~~~~~~~~~~vpa~~v~vvDt 361 (483)
++|++++|+.|++.|+|.. +..+++++|++.|. +.||||.|++ |++++++++.++++++++. +|+
T Consensus 152 ~~dil~pN~~E~~~L~g~~~~~~~~~~~~a~~l~~~g~--~~Vvvt~G~~~~~~~~~G~~~~~~~~~~~~~~~~v~-vdt 228 (283)
T 2ddm_A 152 LAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTL--KWVVVTSASGNEENQEMQVVVVTADSVNVISHSRVK-TDL 228 (283)
T ss_dssp GCSEECCBHHHHHHHHTSCCSSHHHHHHHHHHHCCSSC--CEEEEEC-------CEEEEEEEETTEEEEEEEECCC-CCC
T ss_pred hceEecCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--CEEEEccccCccCCCceeEEEEeCCceEEEeeceeC-CCC
Confidence 9999999999999999874 46677888887765 7899999999 8999988888889988886 899
Q ss_pred CCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccc
Q 011562 362 VGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAMGC 400 (483)
Q Consensus 362 tGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~~~ 400 (483)
+||||+|+|+|+++|++|+++++|+++|+++++.++++.
T Consensus 229 ~GAGDaf~a~~~~~l~~g~~~~~A~~~A~a~a~~~v~~~ 267 (283)
T 2ddm_A 229 KGTGDLFCAQLISGLLKGKALTDAVHRAGLRVLEVMRYT 267 (283)
T ss_dssp CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998764
No 52
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A*
Probab=99.91 E-value=8.1e-24 Score=209.75 Aligned_cols=223 Identities=17% Similarity=0.128 Sum_probs=156.9
Q ss_pred ceEEEEEecCChhhHHHHHHHHHcCCCccceeec--CCCCccccCcccceeEEEEECCCCCcccccccCCCCChhhhhhh
Q 011562 144 DCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSED--TDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMN 221 (483)
Q Consensus 144 ~v~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~--~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~~~~~ 221 (483)
++.++|.+|+|. |+++ |+++||+++++... .+ .|+.++ + .| . ....+.+.
T Consensus 12 ~~~~~g~vG~D~-g~~i---L~~~GV~~~~v~~~~~~~---------~t~~~~--~--~g-------~----~l~~~~i~ 63 (312)
T 2yxt_A 12 SHVIRGYVGNRA-ATFP---LQVLGFEIDAVNSVQFSN---------HTGYAH--W--KG-------Q----VLNSDELQ 63 (312)
T ss_dssp EEESSSCSTHHH-HHHH---HHHTTCEEEEEEEEEESS---------CTTSSC--C--CE-------E----ECCHHHHH
T ss_pred cccCCCccchHh-hHHH---HHHcCCeEEEEEEEEecC---------CCCcCC--c--cC-------c----cCCHHHHH
Confidence 567889999997 9998 99999999887542 11 011110 0 00 0 01122222
Q ss_pred hccHHHHHh-hcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCe--EEEcCCCCCC-----CCCCCChHHHHHHHh-hh
Q 011562 222 KLSAEVKTA-IKHSKVLFCNGYGFDELSPALIISALEYAAQVGTS--IFFDPGPRGK-----SLSSGTPEEQRALSY-FL 292 (483)
Q Consensus 222 ~l~~~~~~~-l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~--v~~D~~~~~~-----~l~~~~~~~~~~l~~-ll 292 (483)
.+.+.+... +..++++++ |+.......+.+.++++.++++|.+ +++||+.+.. .+|. .++..+.+.+ ++
T Consensus 64 ~~~~~~~~~~~~~~~~v~~-G~~~~~~~~~~~~~~~~~a~~~g~~~~vv~Dp~~~~~~~~sg~~~~-~~~~~~~l~~~ll 141 (312)
T 2yxt_A 64 ELYEGLRLNNMNKYDYVLT-GYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDGEGSMYV-PEDLLPVYKEKVV 141 (312)
T ss_dssp HHHHHHHHTTCCCCSEEEE-CCCCCHHHHHHHHHHHHHHHHHCTTCEEEECCCCEEC--CCCEESS-CTTHHHHHHHTTG
T ss_pred HHHHHHHhcCCccCCEEEE-CCCCCHHHHHHHHHHHHHHHhhCCCCeEEECCCcCCCCCCCCCeeC-CHHHHHHHHHHhh
Confidence 222222222 678899774 6543211245666888889888864 8899986532 1121 2244556664 89
Q ss_pred cCCCEEEcCHHHHHHhhCCC-----CHHHHHHHHHHcCCCccEEEEEeCCC------cEEEE-------EC-C----eeE
Q 011562 293 STSDVLLLTSDEAESLTGLR-----NPITAGQELLRKGLRTKWVVVKMGPR------GSILV-------TK-S----SIS 349 (483)
Q Consensus 293 ~~~dil~~N~~Ea~~l~g~~-----~~~~~~~~l~~~g~~~~~vVvT~G~~------G~~~~-------~~-~----~~~ 349 (483)
+++|++++|++|++.|+|.. +..+++++|++.|+ +.||||+|+. |++++ ++ + +.+
T Consensus 142 ~~~dil~pN~~Ea~~L~g~~~~~~~~~~~~~~~l~~~g~--~~VvvT~G~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 219 (312)
T 2yxt_A 142 PLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGP--DTVVITSSDLPSPQGSNYLIVLGSQRRRNPAGSVVMERI 219 (312)
T ss_dssp GGCSEECCCHHHHHHHHSCCCCSHHHHHHHHHHHHHHSC--SEEEECCCSCCCTTCTTEEEEEEEEEC----CCCCEEEE
T ss_pred hhCCEEcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--CEEEEecccCCCCCCCceEEEEEeccccccccccccceE
Confidence 99999999999999999863 56778888998876 7899998886 47765 44 2 578
Q ss_pred EecCccccccCCCCchHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcc
Q 011562 350 CAPAFKVNVTDTVGCGDSFVAAVAFGFIH-NMPTVNTLTIANAVGAATAMG 399 (483)
Q Consensus 350 ~vpa~~v~vvDttGAGDaF~Ag~l~gl~~-g~~l~~al~~A~aaAa~~v~~ 399 (483)
+++++++++ ||+||||+|+|||+++|++ |+++++|+++|+++|+.++++
T Consensus 220 ~~~~~~v~v-dttGAGDaf~a~~~~~l~~~g~~l~~a~~~A~a~a~~~v~~ 269 (312)
T 2yxt_A 220 RMDIRKVDA-VFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSTLHHVLQR 269 (312)
T ss_dssp EEEEECCSS-CCSSHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccCC-CCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 888888887 9999999999999999998 999999999999999888754
No 53
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Probab=99.87 E-value=7.3e-22 Score=193.43 Aligned_cols=160 Identities=20% Similarity=0.148 Sum_probs=125.5
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCe-EEEcCCCCCC---CCCCCChHHHHHHHh-hhcCCCEEEcCHHHHHH
Q 011562 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTS-IFFDPGPRGK---SLSSGTPEEQRALSY-FLSTSDVLLLTSDEAES 307 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~-v~~D~~~~~~---~l~~~~~~~~~~l~~-ll~~~dil~~N~~Ea~~ 307 (483)
.++++++. +. .+.+.+..+++.+++.+.+ +++||+++.. .++ .++..+.+.+ +++++|+++||+.|++.
T Consensus 94 ~~~~v~~G-~l---~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~g~~l~--~~~~~~~l~~~ll~~~dil~pN~~Ea~~ 167 (288)
T 1jxh_A 94 RIDTTKIG-ML---AETDIVEAVAERLQRHHVRNVVLDTVMLAKSGDPLL--SPSAIETLRVRLLPQVSLITPNLPEAAA 167 (288)
T ss_dssp CCSEEEEC-CC---CSHHHHHHHHHHHHHTTCCSEEEECCCC------CC--CHHHHHHHHHHTGGGCSEEECBHHHHHH
T ss_pred CCCEEEEC-CC---CCHHHHHHHHHHHHHCCCCeEEEcCcccCCCCCccC--CHHHHHHHHHHHHhhCcEEcCCHHHHHH
Confidence 36777764 32 2678889999999999996 9999987632 122 2333344554 88999999999999999
Q ss_pred hhCC------CCHHHHHHHHHHcCCCccEEEEEeCCCc-----EEEEECCeeEEecCccccccCCCCchHHHHHHHHHHH
Q 011562 308 LTGL------RNPITAGQELLRKGLRTKWVVVKMGPRG-----SILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGF 376 (483)
Q Consensus 308 l~g~------~~~~~~~~~l~~~g~~~~~vVvT~G~~G-----~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl 376 (483)
|+|. .+..+++++|.+.|. +.||||.|++| ++++++++.+++++++++++||+||||+|+|+|+++|
T Consensus 168 L~g~~~~~~~~~~~~~a~~l~~~g~--~~Vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~vdttGAGD~f~a~~~a~l 245 (288)
T 1jxh_A 168 LLDAPHARTEQEMLAQGRALLAMGC--EAVLMKGGHLEDAQSPDWLFTREGEQRFSAPRVNTKNTHGTGCTLSAALAALR 245 (288)
T ss_dssp HHTCCCCCSHHHHHHHHHHHHHTTC--SEEEEBC---------CEEECSSCEEEC---CCCCSCCBTHHHHHHHHHHHHG
T ss_pred HcCCCCCCCHHHHHHHHHHHHHhCC--CEEEEeccCCCCCceeEEEEECCeEEEEeccccCCCCCCCchHHHHHHHHHHH
Confidence 9987 346678888988776 78999999999 8888888888899999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHHHHhccc
Q 011562 377 IHNMPTVNTLTIANAVGAATAMGC 400 (483)
Q Consensus 377 ~~g~~l~~al~~A~aaAa~~v~~~ 400 (483)
++|+++++|+++|+++++.++++.
T Consensus 246 ~~g~~~~~A~~~A~a~a~~~v~~~ 269 (288)
T 1jxh_A 246 PRHRSWGETVNEAKAWLSAALAQA 269 (288)
T ss_dssp GGSSSHHHHHHHHHHHHHHHHTTG
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999665
No 54
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2
Probab=99.86 E-value=1.3e-20 Score=181.39 Aligned_cols=160 Identities=25% Similarity=0.246 Sum_probs=127.5
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHHcC-CeEEEcCCCCCCC---CCCCChHHHHHH-HhhhcCCCEEEcCHHHHHH
Q 011562 233 HSKVLFCNGYGFDELSPALIISALEYAAQVG-TSIFFDPGPRGKS---LSSGTPEEQRAL-SYFLSTSDVLLLTSDEAES 307 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~~~~~~li~~a~~~g-~~v~~D~~~~~~~---l~~~~~~~~~~l-~~ll~~~dil~~N~~Ea~~ 307 (483)
..+.+++ |+. .+.+.+..+++.+++.+ +++++||+++... ++ ..+..+.+ ..+++++|+++||+.|++.
T Consensus 70 ~~~~v~~-G~l---~~~~~~~~~~~~~~~~~~~~vv~Dp~~~~~~g~~l~--~~~~~~~~~~~ll~~~dil~pN~~E~~~ 143 (258)
T 1ub0_A 70 PLHAAKT-GAL---GDAAIVEAVAEAVRRFGVRPLVVDPVMVAKSGDPLL--AKEAAAALKERLFPLADLVTPNRLEAEA 143 (258)
T ss_dssp CCSEEEE-CCC---CSHHHHHHHHHHHHHTTCCSEEECCCC-----------CHHHHHHHHHHTGGGCSEECCBHHHHHH
T ss_pred CCCEEEE-CCc---CCHHHHHHHHHHHHhCCCCcEEECCeeecCCCCccc--ChHHHHHHHHhhcccCeEEeCCHHHHHH
Confidence 4566665 443 25677888899999988 8999999875431 22 12323344 4688999999999999999
Q ss_pred hhCCC-----CHHHHHHHHHHcCCCccEEEEEeCCC-c----EEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHH
Q 011562 308 LTGLR-----NPITAGQELLRKGLRTKWVVVKMGPR-G----SILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFI 377 (483)
Q Consensus 308 l~g~~-----~~~~~~~~l~~~g~~~~~vVvT~G~~-G----~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~ 377 (483)
|+|.. +..+++++|++.|. +.||+|.|++ | ++++++++.+++++++++++||+||||+|+|+|+++++
T Consensus 144 L~g~~~~~~~~~~~~a~~l~~~g~--~~vvvt~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~dt~GaGD~f~a~~~~~l~ 221 (258)
T 1ub0_A 144 LLGRPIRTLKEAEEAAKALLALGP--KAVLLKGGHLEGEEAVDLLATRGGVLRFSAPRVHTRNTHGTGCTLSAAIAALLA 221 (258)
T ss_dssp HHCSCCCSHHHHHHHHHHHHTTSC--SCEEEEEEECC---EEEEEEETTEEEEEEECCCCCSCCTTHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHcCC--CEEEEccCCCCCCceEEEEEeCCeEEEEeccccCCCCCCChHHHHHHHHHHHHH
Confidence 99873 46678888888765 7799999998 9 78888888888999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHhccc
Q 011562 378 HNMPTVNTLTIANAVGAATAMGC 400 (483)
Q Consensus 378 ~g~~l~~al~~A~aaAa~~v~~~ 400 (483)
+|+++++|+++|+++++.++++.
T Consensus 222 ~g~~~~~a~~~a~~~~~~~~~~~ 244 (258)
T 1ub0_A 222 KGRPLAEAVAEAKAYLTRALKTA 244 (258)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998888653
No 55
>2i5b_A Phosphomethylpyrimidine kinase; ADP complex, PDXK, THID, ribokinase superfamily, transferase; HET: ADP; 2.80A {Bacillus subtilis}
Probab=99.85 E-value=7e-20 Score=177.63 Aligned_cols=162 Identities=19% Similarity=0.196 Sum_probs=132.9
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHHcCC-eEEEcCCCCCCCCCCC-ChHHHHHHH-hhhcCCCEEEcCHHHHHHhh
Q 011562 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGT-SIFFDPGPRGKSLSSG-TPEEQRALS-YFLSTSDVLLLTSDEAESLT 309 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~-~v~~D~~~~~~~l~~~-~~~~~~~l~-~ll~~~dil~~N~~Ea~~l~ 309 (483)
..|.+++ |+.. +.+.+..+++.+++.+. ++++||+.+...+... .++..+.+. ++++++|+++||+.|++.|+
T Consensus 74 ~~d~v~~-G~l~---~~~~~~~~~~~~~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~l~~~ll~~~diltpN~~E~~~L~ 149 (271)
T 2i5b_A 74 GVDAMKT-GMLP---TVDIIELAAKTIKEKQLKNVVIDPVMVCKGANEVLYPEHAQALREQLAPLATVITPNLFEASQLS 149 (271)
T ss_dssp CCSEEEE-CCCC---SHHHHHHHHHHHHHTTCSSEEECCCCSSBCSSSBSSHHHHHHHHHHTGGGCSEECCBHHHHHHHH
T ss_pred CCCEEEE-CCCC---CHHHHHHHHHHHHhCCCCCEEEcCCcCCCCCCcCcCHHHHHHHHHHhHhhCcEEcCCHHHHHHHh
Confidence 6788777 4432 36788889999999998 5999998765432211 233345555 78899999999999999999
Q ss_pred CCC------CHHHHHHHHHHcCCCccEEEEEeCC--CcE----EEEECCeeEEecCccccccCCCCchHHHHHHHHHHHH
Q 011562 310 GLR------NPITAGQELLRKGLRTKWVVVKMGP--RGS----ILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFI 377 (483)
Q Consensus 310 g~~------~~~~~~~~l~~~g~~~~~vVvT~G~--~G~----~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~ 377 (483)
|.. +..+++++|.+.|. +.||+|.|+ +|+ +++++++.+++++++++++||+||||+|.|+|+++++
T Consensus 150 g~~~~~~~~~~~~~a~~l~~~g~--~~Vvvt~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~dt~GaGD~f~a~~~~~l~ 227 (271)
T 2i5b_A 150 GMDELKTVDDMIEAAKKIHALGA--QYVVITGGGKLKHEKAVDVLYDGETAEVLESEMIDTPYTHGAGCTFSAAVTAELA 227 (271)
T ss_dssp TCCCCCSHHHHHHHHHHHHTTTC--SEEEEECGGGSCSSSEEEEEECSSCEEEEEECCCCCSCCBTHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC--CEEEEcCCCCCCCCceEEEEEeCCeEEEEeccccCCCCCCChHHHHHHHHHHHHH
Confidence 875 56778888888766 789999999 784 6777777888999989999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHhccc
Q 011562 378 HNMPTVNTLTIANAVGAATAMGC 400 (483)
Q Consensus 378 ~g~~l~~al~~A~aaAa~~v~~~ 400 (483)
+|+++++|+++|+++++.++++.
T Consensus 228 ~g~~~~~A~~~A~~~~~~~~~~~ 250 (271)
T 2i5b_A 228 KGAEVKEAIYAAKEFITAAIKES 250 (271)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999764
No 56
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*
Probab=99.82 E-value=1.1e-19 Score=177.92 Aligned_cols=166 Identities=22% Similarity=0.204 Sum_probs=132.6
Q ss_pred hcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcC--CeEEEcCCCCCCC-CCCCChHHHHHHHh-hhcCCCEEEcCHHHHH
Q 011562 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVG--TSIFFDPGPRGKS-LSSGTPEEQRALSY-FLSTSDVLLLTSDEAE 306 (483)
Q Consensus 231 l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g--~~v~~D~~~~~~~-l~~~~~~~~~~l~~-ll~~~dil~~N~~Ea~ 306 (483)
+.+.|+ +++|+.......+.+.++++.+++++ .++++||...... .....++..+.+.+ +++++|+++||..|++
T Consensus 75 l~~~d~-v~~G~l~~~~~~~~v~~~l~~~~~~~~~~~vv~DPVm~~~~~~~~~~~~~~~~l~~~ll~~~diitpN~~E~~ 153 (289)
T 3pzs_A 75 LKDCDA-VLSGYIGSPEQGSHILAAVAQVKQANPDAWYFCDPVMGHPEKGCIVAPGVAEFFCNEALPASDMIAPNLLELE 153 (289)
T ss_dssp GGGCCE-EEECCCSSHHHHHHHHHHHHHHHHHCTTCEEEECCCCEETTTEECSCHHHHHHHHHTHHHHCSEECCCHHHHH
T ss_pred ccCCCE-EEECCCCCHHHHHHHHHHHHHHHhhCCCCeEEEcCccccCCCCcccCHHHHHHHHHHhhccCCEEeCCHHHHH
Confidence 357888 47788765555678888898888776 8899998543221 01113555666664 8899999999999999
Q ss_pred HhhCCC-----CHHHHHHHHHHcCCCccEEEEEeC-CCcE-------EEEECCeeEEecCccccc--cCCCCchHHHHHH
Q 011562 307 SLTGLR-----NPITAGQELLRKGLRTKWVVVKMG-PRGS-------ILVTKSSISCAPAFKVNV--TDTVGCGDSFVAA 371 (483)
Q Consensus 307 ~l~g~~-----~~~~~~~~l~~~g~~~~~vVvT~G-~~G~-------~~~~~~~~~~vpa~~v~v--vDttGAGDaF~Ag 371 (483)
.|+|.+ +..+++++|++.|. +.||||.| .+|+ +++++++.++++++++++ +|++||||+|.|+
T Consensus 154 ~L~g~~~~~~~~~~~aa~~l~~~g~--~~Vvvt~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dt~GaGD~f~a~ 231 (289)
T 3pzs_A 154 QLSGERVENVEQAVQVARSLCARGP--KVVLVKHLSRAGYHADCFEMLLVTADDAWHICRPLVDFGKRQPVGVGDLTSGL 231 (289)
T ss_dssp HHHTSCCCSHHHHHHHHHHHHTTSC--SEEEECCCGGGSSCTTEEEEEEECSSCEEEEEEECCCCTTSCCTTHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHCC--CEEEEecccCCCCCCCeEEEEEEeCCeEEEEEeeeecCCCCCCCcHHHHHHHH
Confidence 999974 46778889988876 78999985 5787 777777788888877776 9999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcc
Q 011562 372 VAFGFIHNMPTVNTLTIANAVGAATAMG 399 (483)
Q Consensus 372 ~l~gl~~g~~l~~al~~A~aaAa~~v~~ 399 (483)
|++++++|+++++|+++|+++++.++++
T Consensus 232 ~~~~l~~g~~~~~A~~~A~~~~~~~i~~ 259 (289)
T 3pzs_A 232 LLVNLLKGEPLDKALEHVTAAVYEVMLK 259 (289)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987777654
No 57
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A*
Probab=99.79 E-value=2e-18 Score=168.97 Aligned_cols=163 Identities=14% Similarity=0.082 Sum_probs=130.8
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCC-CCC-CChHHHHHHHhhhcCCCEEEcCHHHHHHhhC
Q 011562 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKS-LSS-GTPEEQRALSYFLSTSDVLLLTSDEAESLTG 310 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~-l~~-~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g 310 (483)
..|.+.+ |+..+.-..+.+.++++.+++.++++++||..+... +|. ..++..+.++++++++|+++||..|++.|+|
T Consensus 77 ~~~aik~-G~l~s~~~i~~v~~~l~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~~~ll~~adiitpN~~Ea~~L~g 155 (291)
T 3mbh_A 77 QFDAIYT-GYLGSPRQIQIVSDFIKDFRQPDSLIVADPVLGDNGRLYTNFDMEMVKEMRHLITKADVITPNLTELFYLLD 155 (291)
T ss_dssp CCSEEEE-CCCSSTTHHHHHHHHHHHHCCTTCEEEECCCCEETTEECTTCCHHHHHHHHHHGGGCSEECCBHHHHHHHHT
T ss_pred ccCEEEE-CCCCCHHHHHHHHHHHHHhcCCCCcEEECceeeeCCCCCCCCCHHHHHHHHHHhccCCEEeCCHHHHHHHhC
Confidence 5777776 666544445777777777766789999999876431 222 2466677788999999999999999999998
Q ss_pred CC--------CHHHHHHHHHHcCCCccEEEEEeCC-------CcEEEEECC--eeEEecCccccccCCCCchHHHHHHHH
Q 011562 311 LR--------NPITAGQELLRKGLRTKWVVVKMGP-------RGSILVTKS--SISCAPAFKVNVTDTVGCGDSFVAAVA 373 (483)
Q Consensus 311 ~~--------~~~~~~~~l~~~g~~~~~vVvT~G~-------~G~~~~~~~--~~~~vpa~~v~vvDttGAGDaF~Ag~l 373 (483)
.+ +..+++++|++.|+ +.||||.|. .|+++++++ +.++++.+++. +|++||||+|.|+|+
T Consensus 156 ~~~~~~~~~~~~~~aa~~L~~~g~--~~Vvvtgg~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~-~dt~GaGD~f~aai~ 232 (291)
T 3mbh_A 156 EPYKADSTDEELKEYLRLLSDKGP--QVVIITSVPVHDEPHKTSVYAYNRQGNRYWKVTCPYLP-AHYPGTGDTFTSVIT 232 (291)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTSC--SEEEEEEEEETTEEEEEEEEEEETTTTEEEEEEESCCG-GGSTTHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCC--CEEEEEeccccCCCCcEEEEEEeCCCCeEEEEEecccC-CCCCChHHHHHHHHH
Confidence 64 35678889999876 889999653 577888763 46677877775 899999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHhcc
Q 011562 374 FGFIHNMPTVNTLTIANAVGAATAMG 399 (483)
Q Consensus 374 ~gl~~g~~l~~al~~A~aaAa~~v~~ 399 (483)
++|++|+++++|+++|+++++.++++
T Consensus 233 a~l~~g~~l~~A~~~A~~~~~~ai~~ 258 (291)
T 3mbh_A 233 GSLMQGDSLPMALDRATQFILQGIRA 258 (291)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888755
No 58
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A*
Probab=99.77 E-value=1.2e-17 Score=162.68 Aligned_cols=161 Identities=21% Similarity=0.149 Sum_probs=128.5
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHH-cCCeEEEcCCCCCC-CCCC-CChHHHHHHHhhhcCCCEEEcCHHHHHHhh
Q 011562 233 HSKVLFCNGYGFDELSPALIISALEYAAQ-VGTSIFFDPGPRGK-SLSS-GTPEEQRALSYFLSTSDVLLLTSDEAESLT 309 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~~~~~~li~~a~~-~g~~v~~D~~~~~~-~l~~-~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~ 309 (483)
..|.+.+ |+.. +.+.+..+.+..++ .+.++++||+.+.. .+|. ..++..+.++++++++|+++||..|++.|+
T Consensus 74 ~~daik~-G~l~---s~~~i~~v~~~l~~~~~~~vv~DPv~~~~g~l~~l~~~~~~~~l~~ll~~adiitpN~~Ea~~L~ 149 (282)
T 3h74_A 74 HFDQALI-GYVG---SVALCQQITTYLEQQTLSLLVVDPVLGDLGQLYQGFDQDYVAAMRQLIQQADVILPNTTEAALLT 149 (282)
T ss_dssp CCSEEEE-CCCC---SHHHHHHHHHHHHHSCCSEEEECCCCEETTEECTTCCHHHHHHHHHHGGGCSEECCCHHHHHHHH
T ss_pred ccCEEEE-CCCC---CHHHHHHHHHHHHHCCCCcEEEcCeeecCCCCCCCCCHHHHHHHHHHhccCCEECCCHHHHHHHh
Confidence 6778877 5542 45666666666655 46899999987642 1222 346667778899999999999999999999
Q ss_pred CCC-----CHHHHHHHHHH-cCCCccEEEEEeCC----CcEEEEE-CCeeEEecCccccccCCCCchHHHHHHHHHHHHc
Q 011562 310 GLR-----NPITAGQELLR-KGLRTKWVVVKMGP----RGSILVT-KSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIH 378 (483)
Q Consensus 310 g~~-----~~~~~~~~l~~-~g~~~~~vVvT~G~----~G~~~~~-~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~ 378 (483)
|.+ +..+++++|++ .|++ +.||||.|. .|+++++ +++.++++++++. +|++||||+|.|+|+++|++
T Consensus 150 g~~~~~~~~~~~aa~~L~~~~g~~-~~Vvvt~G~~~~~~g~~~~~~~~~~~~~~~~~v~-~dt~GaGD~fsaai~a~l~~ 227 (282)
T 3h74_A 150 GAPYQVTPDLEVILPALQAQLKTG-AHAVITDVQRADQIGCAWLDEAGHVQYCGARRLP-GHYNGTGDTLAAVIAGLLGR 227 (282)
T ss_dssp TCCCCSSCCHHHHHHHHHTTSCTT-CEECEEEEEETTEEEEEEECTTSCEEEEEEECCS-SCCTTHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCC-CEEEEEecCCCCceEEEEEeCCCeEEEEEecCCC-CCCcCHHHHHHHHHHHHHHC
Confidence 874 78899999998 6541 579999995 7888885 6667778877774 89999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcc
Q 011562 379 NMPTVNTLTIANAVGAATAMG 399 (483)
Q Consensus 379 g~~l~~al~~A~aaAa~~v~~ 399 (483)
|+++++|+++|+++++.++++
T Consensus 228 g~~l~~A~~~A~~~~~~ai~~ 248 (282)
T 3h74_A 228 GYPLAPTLARANQWLNMAVAE 248 (282)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888753
No 59
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei}
Probab=99.77 E-value=1.3e-17 Score=163.78 Aligned_cols=175 Identities=17% Similarity=0.122 Sum_probs=128.5
Q ss_pred hhhhccHHHHHh--hcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcC------CeEEEcCCCCCC-CCCCCChHHHHHHH
Q 011562 219 WMNKLSAEVKTA--IKHSKVLFCNGYGFDELSPALIISALEYAAQVG------TSIFFDPGPRGK-SLSSGTPEEQRALS 289 (483)
Q Consensus 219 ~~~~l~~~~~~~--l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g------~~v~~D~~~~~~-~l~~~~~~~~~~l~ 289 (483)
+++.+.+.+... +.++|+| .+||+.+....+.+.++++..++.+ .++++||..... .++ ..++..+.+.
T Consensus 60 ql~~~~~~~~~~~~~~~~daV-~tG~l~s~~~i~~v~~~l~~~k~~~~~~~~~~~vv~DPVm~d~G~~~-~~~~~~~~~~ 137 (300)
T 3zs7_A 60 EYDELMEGVRANNFLSNYRYI-LTGYINNVDIIGRIRDTLKEVRELREKEDKKLTFICDPVMGDDGIMY-CKKEVLDAYR 137 (300)
T ss_dssp HHHHHHHHHHHTTCGGGCSEE-EECCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEECCCC----------CTHHHHHH
T ss_pred HHHHHHHHHHhcCCcccCCEE-EECCCCCHHHHHHHHHHHHHHHhhCcCcCCCceEEEccccccCCCee-cCHHHHHHHH
Confidence 334444444322 2467874 5588765555577778888777655 789999964432 122 2355667778
Q ss_pred hhhcCCCEEEcCHHHHHHhhCCC-----CHHHHHHHHHHcCCCccEEEEEeCCCc-------EEEEEC------CeeEEe
Q 011562 290 YFLSTSDVLLLTSDEAESLTGLR-----NPITAGQELLRKGLRTKWVVVKMGPRG-------SILVTK------SSISCA 351 (483)
Q Consensus 290 ~ll~~~dil~~N~~Ea~~l~g~~-----~~~~~~~~l~~~g~~~~~vVvT~G~~G-------~~~~~~------~~~~~v 351 (483)
++++++|+++||..|++.|+|.+ +..+++++|++.|+ +.||||.|+.| +++..+ ++.+++
T Consensus 138 ~Ll~~adiitPN~~Ea~~L~g~~~~~~~~~~~aa~~L~~~G~--~~Vvvt~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~ 215 (300)
T 3zs7_A 138 ELVPLADIVTPNYFEASLLSGVTVNDLSSAILAADWFHNCGV--AHVIIKSFREQENPTHLRFLYSVKEGSEAAVRRFSG 215 (300)
T ss_dssp HHGGGCSEECCCHHHHHHHHSSCCCSHHHHHHHHHHHHHHTC--SEEEEEEEC---CCSEEEEEEEECCSTTSCCEEEEE
T ss_pred HHhhhCCEecCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC--CEEEEecCcCCCCCceEEEEEeccccccCCCeEEEE
Confidence 89999999999999999999974 56778899999887 88999999988 333334 467778
Q ss_pred cCccccccCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Q 011562 352 PAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTVNTLTIANAVGAATAMG 399 (483)
Q Consensus 352 pa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~~al~~A~aaAa~~v~~ 399 (483)
+.++++. |++|+||+|.|+|+++| +|+++++|+++|.++...++..
T Consensus 216 ~~~~v~~-~~~GtGD~fsaal~a~l-~g~~~~~Av~~A~~~v~~~i~~ 261 (300)
T 3zs7_A 216 VVPYHEG-RYTGTGDVFAACLLAFS-HSHPMDVAIGKSMAVLQELIIA 261 (300)
T ss_dssp EEECCSS-CBTTHHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHH
T ss_pred EeccCCC-CCcCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHH
Confidence 8887776 89999999999999999 9999999999999997766644
No 60
>1ekq_A Hydroxyethylthiazole kinase; alpha-beta, transferase; 1.50A {Bacillus subtilis} SCOP: c.72.1.2 PDB: 1ekk_A 1c3q_A 1esj_A 1esq_A*
Probab=99.59 E-value=1.8e-14 Score=139.44 Aligned_cols=159 Identities=17% Similarity=0.140 Sum_probs=114.5
Q ss_pred hhcCCcEEEEe-cCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc--CCCEEEcCHHHHH
Q 011562 230 AIKHSKVLFCN-GYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS--TSDVLLLTSDEAE 306 (483)
Q Consensus 230 ~l~~~~~v~is-G~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~--~~dil~~N~~Ea~ 306 (483)
.+..++++++. |. +.....+.+.++++.+++.|+++++||..... .....+...++++ ++|+++||..|+.
T Consensus 55 ~~~~a~~lvi~~G~-~~~~~~~~~~~~~~~a~~~~~pvVlDp~g~~~-----~~~~~~~~~~ll~~~~~~vitPN~~E~~ 128 (272)
T 1ekq_A 55 MAKIAGALVLNIGT-LSKESVEAMIIAGKSANEHGVPVILDPVGAGA-----TPFRTESARDIIREVRLAAIRGNAAEIA 128 (272)
T ss_dssp HHHHSSEEEEECTT-CCHHHHHHHHHHHHHHHHTTCCEEEECTTBTT-----BHHHHHHHHHHHHHSCCSEEEECHHHHH
T ss_pred HHHhCCEEEEECCC-CCHHHHHHHHHHHHHHHhcCCeEEEeCCCcCc-----ccchHHHHHHHHccCCCeEECCCHHHHH
Confidence 34668888885 43 22222467778888888999999999964321 1211233456676 8999999999999
Q ss_pred HhhCCC--------------CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHH
Q 011562 307 SLTGLR--------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAV 372 (483)
Q Consensus 307 ~l~g~~--------------~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~ 372 (483)
.|+|.. +..+++++|.+++. ..||+| |..+ ++.++++.++++.....+.|++|+||+|.|.+
T Consensus 129 ~L~g~~~~~~~gvd~~~~~~~~~~aa~~l~~~~~--~vVv~~-G~~~-~i~~~~~~~~~~~~~~~~~~ttGaGD~lag~i 204 (272)
T 1ekq_A 129 HTVGVTDWLIKGVDAGEGGGDIIRLAQQAAQKLN--TVIAIT-GEVD-VIADTSHVYTLHNGHKLLTKVTGAGCLLTSVV 204 (272)
T ss_dssp HHCC---------------HHHHHHHHHHHHHHT--SEEEEC-SSSE-EEECSSCEEEECCCCGGGGGSTTHHHHHHHHH
T ss_pred HHhCCCcccccCccCCCCHHHHHHHHHHHHHHcC--CEEEEE-CCCC-EEEeCCEEEEEcCCCccccCccCchHHHHHHH
Confidence 999854 24567788877642 344445 9888 55566677888887777889999999998888
Q ss_pred HHHHHcCCCHHHHHHHHHH----HHHHHhc
Q 011562 373 AFGFIHNMPTVNTLTIANA----VGAATAM 398 (483)
Q Consensus 373 l~gl~~g~~l~~al~~A~a----aAa~~v~ 398 (483)
.+.+..|.++.+|+++|.+ ++.....
T Consensus 205 aa~la~g~~~~~A~~~A~~~~~~A~~~a~~ 234 (272)
T 1ekq_A 205 GAFCAVEENPLFAAIAAISSYGVAAQLAAQ 234 (272)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 8888889999999999996 4444443
No 61
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae}
Probab=99.49 E-value=2.5e-13 Score=144.07 Aligned_cols=153 Identities=16% Similarity=0.116 Sum_probs=113.1
Q ss_pred CCcEEEEecCCCCCCCHHH---HHHHHHHHHHcCCeEEEcCCCCC---CCCCCCChHHHHHHH-hhhcCCCEEEcCHHHH
Q 011562 233 HSKVLFCNGYGFDELSPAL---IISALEYAAQVGTSIFFDPGPRG---KSLSSGTPEEQRALS-YFLSTSDVLLLTSDEA 305 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~~~---~~~li~~a~~~g~~v~~D~~~~~---~~l~~~~~~~~~~l~-~ll~~~dil~~N~~Ea 305 (483)
..|.|.+. ++ +.+. +.++++..++.+.++++||.... ..++ .++..+.+. .+++.+|+++||..|+
T Consensus 91 ~~daIkiG-~l----s~~~i~~v~~~l~~~~~~~~~vVlDPvm~a~~g~~l~--~~~~~~~l~~~Ll~~a~iitPN~~Ea 163 (550)
T 3rm5_A 91 KCNVIKTG-ML----TAAAIEVLHEKLLQLGENRPKLVVDPVLVATSGSSLA--GKDIVSLITEKVAPFADILTPNIPEC 163 (550)
T ss_dssp CCSEEEEC-SC----CHHHHHHHHHHHHHHGGGSCEEEECCCC-----------CTTHHHHHHHHTGGGCSEECCBHHHH
T ss_pred CCCEEEEC-CC----CHHHHHHHHHHHHHhcccCCCEEEecceecCCCCcCC--CHHHHHHHHHHhhCcceEEecCHHHH
Confidence 67888774 43 4444 44444444445899999997542 1122 234455555 7899999999999999
Q ss_pred HHhhCCC-------CHHHHHHHHHHcCCCccEEEEEeCCCc--------E--EEEE--CCeeEEecCccccccCCCCchH
Q 011562 306 ESLTGLR-------NPITAGQELLRKGLRTKWVVVKMGPRG--------S--ILVT--KSSISCAPAFKVNVTDTVGCGD 366 (483)
Q Consensus 306 ~~l~g~~-------~~~~~~~~l~~~g~~~~~vVvT~G~~G--------~--~~~~--~~~~~~vpa~~v~vvDttGAGD 366 (483)
..|+|.. +..+++++|.++|. ++.||||.|..+ + +++. +++.+.++.+.++++|++|+||
T Consensus 164 ~~L~g~~~~i~~~~d~~~aa~~L~~~g~-~~~VvvkgG~~~~~g~~~~~~~d~l~~~~~~~~~~~~~~~v~~~~t~GtGD 242 (550)
T 3rm5_A 164 YKLLGEERKVNGLQDIFQIAKDLAKITK-CSNILVKGGHIPWNDEKEKYITDVLFLGAEQKFIIFKGNFVNTTHTHGTGC 242 (550)
T ss_dssp HHHHSCCCCCCSSHHHHHHHHHHHHHHC-CSCEEEEECC-------CCEEEEEEEETTTTEEEEEEEECCCCSCCBTHHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHhCC-CCEEEEeCCCCCcccCCCCeEEEEEEEcCCCeEEEEEecCcCCCCCcChhH
Confidence 9999863 46778889988763 257999998863 3 4553 4567778888888899999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011562 367 SFVAAVAFGFIHNMPTVNTLTIANAVG 393 (483)
Q Consensus 367 aF~Ag~l~gl~~g~~l~~al~~A~aaA 393 (483)
+|.|+++++|++|+++++|+++|++.-
T Consensus 243 ~fsaaiaa~La~G~~l~eAv~~A~~~v 269 (550)
T 3rm5_A 243 TLASAIASNLARGYSLPQSVYGGIEYV 269 (550)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999643
No 62
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} PDB: 3hpd_A
Probab=99.22 E-value=6.4e-11 Score=113.86 Aligned_cols=155 Identities=21% Similarity=0.121 Sum_probs=108.9
Q ss_pred HHHhhcCCcEEEEe-cCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc-CCCEEEcCHHH
Q 011562 227 VKTAIKHSKVLFCN-GYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS-TSDVLLLTSDE 304 (483)
Q Consensus 227 ~~~~l~~~~~v~is-G~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~-~~dil~~N~~E 304 (483)
..+.++.+|.+++. |.. .....+.+..+++.+++.++++++||..... .....+....+++ .+++++||..|
T Consensus 50 ~~~~~~~~dalvi~~G~~-~~~~~~~~~~~~~~a~~~~~pvVlDpv~~~~-----~~~~~~~~~~ll~~~~~vITPN~~E 123 (265)
T 1v8a_A 50 LEEMIRLADAVVINIGTL-DSGWRRSMVKATEIANELGKPIVLDPVGAGA-----TKFRTRVSLEILSRGVDVLKGNFGE 123 (265)
T ss_dssp HHHHHHHCSEEEEECTTC-CHHHHHHHHHHHHHHHHHTCCEEEECTTBTT-----BHHHHHHHHHHHHHCCSEEEEEHHH
T ss_pred HHHHHHHCCEEEEEECCC-CHHHHHHHHHHHHHHHHcCCcEEEcCccccc-----cccCHHHHHHHHHhCCcEEcCCHHH
Confidence 34456778999996 221 1111235667778888899999999975321 1222233344443 38999999999
Q ss_pred HHHhhCCC--------------CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHH
Q 011562 305 AESLTGLR--------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVA 370 (483)
Q Consensus 305 a~~l~g~~--------------~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~A 370 (483)
+..|+|.. +..+++++|.+++. ..||+| |..+. +++++..+.++.......+++|+||+|.|
T Consensus 124 ~~~L~g~~~~~~gvd~~~~~~~~~~~aa~~la~~~~--~~Vvlk-G~~d~-i~~~~~~~~~~~g~~~~~~~~GtGD~Lsg 199 (265)
T 1v8a_A 124 ISALLGEEGKTRGVDSLEYGEEEAKKLTMNAAREFN--TTVAVT-GAVDY-VSDGRRTFAVYNGHELLGRVTGTGCMVAA 199 (265)
T ss_dssp HHHHHHHHC----------CHHHHHHHHHHHHHHTT--SEEEEE-SSSEE-EECSSCEEEECCCCGGGGGSTTHHHHHHH
T ss_pred HHHHhCCcccccCcCcccccHHHHHHHHHHHHHHhC--cEEEEc-CCCcE-EEcCCEEEEEcCCCcCcCCccChhHHHHH
Confidence 99998632 24567888888753 456666 87774 45666677787765556699999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHH
Q 011562 371 AVAFGFIHNMPTVNTLTIANAV 392 (483)
Q Consensus 371 g~l~gl~~g~~l~~al~~A~aa 392 (483)
.+.+.+.+|.+ .+|+..|...
T Consensus 200 ~iaa~lA~g~~-~~Aa~~a~~~ 220 (265)
T 1v8a_A 200 LTGAFVAVTEP-LKATTSALVT 220 (265)
T ss_dssp HHHHHHTTSCH-HHHHHHHHHH
T ss_pred HHHHHHhcCCC-HHHHHHHHHH
Confidence 99999999999 8888877654
No 63
>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like superfamily, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus faecalis} PDB: 2r3e_A
Probab=98.97 E-value=7.5e-09 Score=101.45 Aligned_cols=144 Identities=16% Similarity=0.139 Sum_probs=89.8
Q ss_pred hhcCCcEEEEecCCCCCCCH---HHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHh---hh--cCCCEEEcC
Q 011562 230 AIKHSKVLFCNGYGFDELSP---ALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSY---FL--STSDVLLLT 301 (483)
Q Consensus 230 ~l~~~~~v~isG~~~~~~~~---~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~---ll--~~~dil~~N 301 (483)
.++..|.+.+. -.+ .... +.+.++++.++ .++++++|+... ..+.. ++ +..++++||
T Consensus 108 ~~~~~dav~IG-~Gl-~~~~~~~~~v~~~l~~~~-~~~pvVlDa~g~------------~ll~~~~~~l~~~~~~viTPN 172 (310)
T 2r3b_A 108 VVEQADVILIG-PGL-GLDATAQQILKMVLAQHQ-KQQWLIIDGSAI------------TLFSQGNFSLTYPEKVVFTPH 172 (310)
T ss_dssp HHHHCSEEEEC-TTC-CSSHHHHHHHHHHHHHCC-TTCEEEEETHHH------------HHHHHTTCCCSSGGGEEEECC
T ss_pred HhccCCEEEEe-CCC-CCCHHHHHHHHHHHHhcC-CCCcEEEcCCcc------------hhcccchhhhcCCCCEEEcCC
Confidence 34568888886 111 1123 33334443322 489999999421 11111 12 357899999
Q ss_pred HHHHHHhhCCC------CH-HHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHH
Q 011562 302 SDEAESLTGLR------NP-ITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAF 374 (483)
Q Consensus 302 ~~Ea~~l~g~~------~~-~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~ 374 (483)
..|+..|+|.. +. .++++++ + + +|+..| .+.++++++.. ++.....+..+++|+||+|.|.+.+
T Consensus 173 ~~E~~~L~g~~~~~~~~~~a~~aA~~l---g--~--~VvlKG-~~~vi~~~~~~-~~~~~g~~~~~t~GtGD~Lag~Iaa 243 (310)
T 2r3b_A 173 QMEWQRLSHLPIEQQTLANNQRQQAKL---G--S--TIVLKS-HRTTIFHAGEP-FQNTGGNPGMATGGTGDTLAGIIAG 243 (310)
T ss_dssp HHHHHHHHCCCGGGCCHHHHHHHHHHH---T--S--EEEECS-TTCEEECSSSC-EECCCCCGGGCSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcccchHHHHHHHHh---C--c--EEEEeC-CceEEEECCEE-EEECCCCCCCCCCChHHHHHHHHHH
Confidence 99999999864 22 4455555 3 2 455555 55666663334 4445566778999999997554444
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHh
Q 011562 375 GFIHNMPTVNTLTIANAVGAATA 397 (483)
Q Consensus 375 gl~~g~~l~~al~~A~aaAa~~v 397 (483)
.+.+|+++.+|+..|.++.+...
T Consensus 244 ~lA~g~~~~eA~~~A~~~~~~ag 266 (310)
T 2r3b_A 244 FLAQFKPTIETIAGAVYLHSLIG 266 (310)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHH
Confidence 45699999999999987766543
No 64
>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer sandwich, unknown function; 2.50A {Streptococcus mutans}
Probab=98.97 E-value=2.1e-09 Score=105.49 Aligned_cols=163 Identities=15% Similarity=0.096 Sum_probs=99.1
Q ss_pred hhcCCcEEEEecCCCCCCCH---HHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHh---h-h-cCCCEEEcC
Q 011562 230 AIKHSKVLFCNGYGFDELSP---ALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSY---F-L-STSDVLLLT 301 (483)
Q Consensus 230 ~l~~~~~v~isG~~~~~~~~---~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~---l-l-~~~dil~~N 301 (483)
.++..|.+.+. -.+ .... +.+.++++.++ .++++++|+... ..+.. + + +..++++||
T Consensus 122 ~~~~~dav~IG-~Gl-~~~~~~~~~v~~~l~~~~-~~~pvVlDa~g~------------~ll~~~~~l~L~~~~~viTPN 186 (311)
T 3bgk_A 122 QITAADVVLMG-PGL-AEDDLAQTTFDVVWQAIE-PKQTLIIDGSAI------------NLLAKRKPAIWPTKQIILTPH 186 (311)
T ss_dssp HHHHCSEEEEC-TTC-CSSHHHHHHHHHHHHHCC-TTSEEEEETHHH------------HHHHHCC-CCCSCSCEEEECC
T ss_pred HhccCCEEEEc-CCC-CCCHHHHHHHHHHHHHcC-CCCeEEEeCChh------------hhhccChhhcCCCCCEEECCc
Confidence 34568888886 111 1123 33333443322 488999999421 11111 1 3 468899999
Q ss_pred HHHHHHhhCCC--C----H-HHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHH
Q 011562 302 SDEAESLTGLR--N----P-ITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAF 374 (483)
Q Consensus 302 ~~Ea~~l~g~~--~----~-~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~ 374 (483)
..|+..|+|.. + . .+++++|.+ + .+|+..| .+.++++ ++.+++.....+..+++|+||+| +|+++
T Consensus 187 ~~E~~~L~g~~~~~~~~d~~~~aa~~l~~-g----~~VvlkG-~~~~i~~-~~~~~~~~~~~~~~~t~GtGD~L-ag~ia 258 (311)
T 3bgk_A 187 QKEWERLSGLTIPEQIEAATQTALAHFPK-E----TILVAKS-HQTKIYQ-GQKIGHIQVGGPYQATGGMGDTL-AGMIA 258 (311)
T ss_dssp SCC-CTTTCCCSTTCCHHHHHHHHTTSCT-T----CEEEECS-SSCEEEE-TTEEEEECCCCGGGCSTTHHHHH-HHHHH
T ss_pred HHHHHHHhCCCCCcchhhHHHHHHHHHhc-C----CEEEEeC-CCeEEEE-CCEEEEECCCCCCCCCCcHHHHH-HHHHH
Confidence 99999999864 1 2 344555544 3 2455445 6667777 44344555667788999999997 55555
Q ss_pred H-HHc-CCCHHHHHHHHHHHHHHHhcc---cCCCCCCCCHHHHHHHHHh
Q 011562 375 G-FIH-NMPTVNTLTIANAVGAATAMG---CGAGRNVATLERVIELMRA 418 (483)
Q Consensus 375 g-l~~-g~~l~~al~~A~aaAa~~v~~---~G~~~~~p~~~ev~~~l~~ 418 (483)
+ +.+ |.++.+|+.+|.++.+...+. .| . --...++.+.+.+
T Consensus 259 a~lA~~g~~~~eA~~~A~~~~~~ag~~a~~~g--~-~~~a~dl~~~l~~ 304 (311)
T 3bgk_A 259 GFVAQFHTDRFEVAAAAVFLHSYIADQLSKEA--Y-VVLPTRISAEITR 304 (311)
T ss_dssp HHHHHCCSCHHHHHHHHHHHHHHHHHHHHTTC--S-SCCHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHhhC--C-CCCHHHHHHHHHH
Confidence 5 568 999999999998776654321 13 2 2356667665543
No 65
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}
Probab=98.94 E-value=3.6e-08 Score=94.46 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=108.8
Q ss_pred HHHHHhhcCCcEEEEe-cCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhh-cCCCEEEcCH
Q 011562 225 AEVKTAIKHSKVLFCN-GYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFL-STSDVLLLTS 302 (483)
Q Consensus 225 ~~~~~~l~~~~~v~is-G~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll-~~~dil~~N~ 302 (483)
++..+..+.++.+++. |.. .....+.+..+++.+++.++++++||..... .....+....++ ...++|.||.
T Consensus 50 ~e~~e~~~~a~alvIn~G~l-~~~~~~~~~~a~~~a~~~~~PvVlDPVg~ga-----s~~r~~~~~~Ll~~~~~VItpN~ 123 (273)
T 3dzv_A 50 REFPQMFQQTSALVLNLGHL-SQEREQSLLAASDYARQVNKLTVVDLVGYGA-----SDIRNEVGEKLVHNQPTVVKGNL 123 (273)
T ss_dssp GGHHHHHTTCSEEEEECCSC-CHHHHHHHHHHHHHHHHTTCCEEEECTTTTS-----CHHHHHHHHHHHHTCCSEEEEEH
T ss_pred HHHHHHHHHCCeEEEecCCC-ChHHHHHHHHHHHHHHHcCCcEEEchhhcCC-----cccCHHHHHHHHhcCCcEECCCH
Confidence 4556667889999998 321 1111246667777888999999999965432 122223333333 3689999999
Q ss_pred HHHHHhhCCC-------------------CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCC
Q 011562 303 DEAESLTGLR-------------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVG 363 (483)
Q Consensus 303 ~Ea~~l~g~~-------------------~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttG 363 (483)
.|+..|+|.. +..++++++.+++ +...|++|- ..- ++++++..+.++.-....-+++|
T Consensus 124 ~E~~~L~g~~~~~~GVds~~~~~~~~~~~d~~~aa~~la~~~-~~~~VvlkG-~~D-~i~dg~~~~~~~~G~~~~~~v~G 200 (273)
T 3dzv_A 124 SEMRTFCQLVSHGRGVDGSPLDQSEEAIEELIQALRQQTQKF-PQTVFLATG-IQD-VLVSQEQVIVLQNGVPELDCFTG 200 (273)
T ss_dssp HHHHHHTTCCCC-------CGGGSHHHHHHHHHHHHHHHHHS-TTCEEEEES-SSE-EEECSSCEEEECCCCGGGGSSTT
T ss_pred HHHHHHhCCcccccccccccccchhhhhHHHHHHHHHHHHHh-CCeEEEEEC-Cee-EEEcCCEEEEeCCCCcccCCcCC
Confidence 9999999853 2235677787764 213466664 332 45555666777655444566799
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011562 364 CGDSFVAAVAFGFIHNMPTVNTLTIANAV 392 (483)
Q Consensus 364 AGDaF~Ag~l~gl~~g~~l~~al~~A~aa 392 (483)
.||++.|.+.+.+..|.++.+|+..|...
T Consensus 201 tGc~Ls~~Iaa~lA~g~~~~~Aa~~A~~~ 229 (273)
T 3dzv_A 201 TGDLVGALVAALLGEGNAPMTAAVAAVSY 229 (273)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999999999887764
No 66
>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics, PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis} PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A* 3rqq_A* 3rqx_A* 1kyh_A
Probab=98.84 E-value=9.7e-08 Score=91.96 Aligned_cols=167 Identities=11% Similarity=0.058 Sum_probs=110.5
Q ss_pred hcCCcEEEEecCCCCCCCH-HHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhh
Q 011562 231 IKHSKVLFCNGYGFDELSP-ALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLT 309 (483)
Q Consensus 231 l~~~~~v~isG~~~~~~~~-~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~ 309 (483)
++.+|++++. +.+.. +...++++.+.+.+.++++|....... . + ......++++||..|+..|+
T Consensus 96 l~~~davviG----PGlg~~~~~~~~~~~~l~~~~p~VlDAdal~~~---~-------l-~~~~~~~vlTPN~~E~~~L~ 160 (279)
T 3rpz_A 96 EETYRAIAIG----PGLPQTESVQQAVDHVLTADCPVILDAGALAKR---T-------Y-PKREGPVILTPHPGEFFRMT 160 (279)
T ss_dssp SSCCSEEEEC----TTCCCCHHHHHHHHHHTTSSSCEEECGGGCCSC---C-------C-CCCSSCEEECCCHHHHHHHH
T ss_pred ccCCCEEEEC----CCCCCCHHHHHHHHHHHhhCCCEEEECCccchh---h-------h-hhccCCEEEecCHHHHHHHh
Confidence 4678999996 23322 345667777777889999998643210 0 0 11245689999999999999
Q ss_pred CCC------CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcCCCHH
Q 011562 310 GLR------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHNMPTV 383 (483)
Q Consensus 310 g~~------~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g~~l~ 383 (483)
|.. +..++++++.+++ + . +|+--|. +.+++++++.+++.....+...+.|+||++.|.+.+.+.+|.++.
T Consensus 161 g~~~~~~~~d~~~aa~~la~~~-~-~-~VvlKG~-~~vi~~~~g~~~~~~~g~~~~at~GtGD~Lag~iaa~lA~g~~~~ 236 (279)
T 3rpz_A 161 GVPVNELQKKRAEYAKEWAAQL-Q-T-VIVLKGN-QTVIAFPDGDCWLNPTGNGALAKGGTGDTLTGMILGMLCCHEDPK 236 (279)
T ss_dssp CCCHHHHTTSHHHHHHHHHHHH-T-S-EEEECST-TCEEECTTSCEEECCCCCGGGCSTTHHHHHHHHHHHHHHHCSSHH
T ss_pred CCCccchHHHHHHHHHHHHHHc-C-e-EEEEeCC-CcEEECCCceEEEeCCCCCCCCCCChHHHHHHHHHHHHHCCCCHH
Confidence 863 5667788888764 2 2 4444454 456666665555555555678899999987666666677999999
Q ss_pred HHHHHHHH----HHHHHhcccCCCCCCCCHHHHHHHHHh
Q 011562 384 NTLTIANA----VGAATAMGCGAGRNVATLERVIELMRA 418 (483)
Q Consensus 384 ~al~~A~a----aAa~~v~~~G~~~~~p~~~ev~~~l~~ 418 (483)
+|+..|.. +|-...+..|.. -....|+.+.+.+
T Consensus 237 ~A~~~a~~lh~~Ag~~a~~~~g~~--~~~a~dl~~~lp~ 273 (279)
T 3rpz_A 237 HAVLNAVYLHGACAELWTDEHSAH--TLLAHELSDILPR 273 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTT--SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC--CcCHHHHHHHHHH
Confidence 99999875 344444555522 2356777665543
No 67
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=98.79 E-value=1.5e-07 Score=98.00 Aligned_cols=175 Identities=13% Similarity=0.089 Sum_probs=113.9
Q ss_pred HHHHhhcCCcEEEEecCCCCCCC-HHHHHHHHH-HHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHH
Q 011562 226 EVKTAIKHSKVLFCNGYGFDELS-PALIISALE-YAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSD 303 (483)
Q Consensus 226 ~~~~~l~~~~~v~isG~~~~~~~-~~~~~~li~-~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~ 303 (483)
++.+.+..+|.+++. ..+. .+...++++ .+++.++++++|+..... .. .+.+ ...+..++++||..
T Consensus 313 ~~~~~~~~~davviG----pGlg~~~~~~~~~~~~l~~~~~pvVlDadgl~~--l~-----~~ll-~~~~~~~vlTPN~~ 380 (502)
T 3rss_A 313 ECLELSKDVDVVAIG----PGLGNNEHVREFVNEFLKTLEKPAVIDADAINV--LD-----TSVL-KERKSPAVLTPHPG 380 (502)
T ss_dssp HHHHHHTTCSEEEEC----TTCCCSHHHHHHHHHHHHHCCSCEEECHHHHHT--CC-----HHHH-HHCSSCEEECCCHH
T ss_pred HHHHHhccCCEEEEe----CCCCCCHHHHHHHHHHHHhcCCCEEEeCcccch--hc-----HHHH-hccCCCEEEeCCHH
Confidence 344556889999997 2222 233344444 456679999999953211 10 1122 22346789999999
Q ss_pred HHHHhhCCC------CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHH
Q 011562 304 EAESLTGLR------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFI 377 (483)
Q Consensus 304 Ea~~l~g~~------~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~ 377 (483)
|+..|+|.. + .++++++.+++ + .+|+..|. +.++++++..+.. ....+..+++|+||+|.|.+.+.+.
T Consensus 381 E~~~L~g~~~~~~~~d-~~aa~~la~~~-~--~~VvlKG~-~~vi~~~~~~~~~-~~g~~~~at~GsGD~Lag~iaa~lA 454 (502)
T 3rss_A 381 EMARLVKKTVGDVKYN-YELAEEFAKEN-D--CVLVLKSA-TTIVTDGEKTLFN-ITGNTGLSKGGSGDVLTGMIAGFIA 454 (502)
T ss_dssp HHHHHHTCCHHHHTTC-HHHHHHHHHHH-T--SEEEECSS-SEEEECSSCEEEE-CCCCGGGSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccchHHH-HHHHHHHHHHc-C--CEEEEeCC-CeEEEcCCEEEEE-CCCCCccccCCchHHHHHHHHHHHh
Confidence 999999853 4 67788888764 2 25665565 4556666644443 3455678999999999888888888
Q ss_pred cCCCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHh
Q 011562 378 HNMPTVNTLTIANAVGAATAMGCGAGRNVATLERVIELMRA 418 (483)
Q Consensus 378 ~g~~l~~al~~A~aaAa~~v~~~G~~~~~p~~~ev~~~l~~ 418 (483)
+|.++.+|+.+|...-+.+......+..--...|+.+.+.+
T Consensus 455 ~g~~~~~Aa~~A~~~hg~Ag~~aa~g~~~~~a~dl~~~lp~ 495 (502)
T 3rss_A 455 QGLSPLEASTVSVYLHGFAAELFEQDERGLTASELLRLIPE 495 (502)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTCSSCGGGCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHH
Confidence 99999999999987766654332111122366777766543
No 68
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=98.31 E-value=3.6e-05 Score=80.68 Aligned_cols=158 Identities=18% Similarity=0.122 Sum_probs=108.1
Q ss_pred ccHHHHHhhcC-CcEEEEe-cCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc--CCCEE
Q 011562 223 LSAEVKTAIKH-SKVLFCN-GYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS--TSDVL 298 (483)
Q Consensus 223 l~~~~~~~l~~-~~~v~is-G~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~--~~dil 298 (483)
..++..+..+. ++.+++. |.. .. .+.+..+++.+++.++++++||..... .....+....+++ ..++|
T Consensus 295 ~~~E~~e~~~~~~~alvin~G~l-~~--~~~~~~a~~~a~~~~~PvVlDPVg~~a-----~~~r~~~~~~Ll~~~~~~vI 366 (540)
T 3nl6_A 295 IQSEVNDLAAIPHATLLLNTGSV-AP--PEMLKAAIRAYNDVKRPIVFDPVGYSA-----TETRLLLNNKLLTFGQFSCI 366 (540)
T ss_dssp CHHHHHHHTTSTTCEEEEESSCS-CC--HHHHHHHHHHHHTTTCCEEEECTTCTT-----SHHHHHHHHHHTTSCCCSEE
T ss_pred CHHHHHHHHhccCCeEEEeCCCC-CH--HHHHHHHHHHHHHcCCCEEEChHHhhc-----ccccHHHHHHHHhhCCCeEE
Confidence 34566677787 9999998 432 22 788888888999999999999965432 2223345567776 78999
Q ss_pred EcCHHHHHHhhCCC----------------CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEEC-----------------
Q 011562 299 LLTSDEAESLTGLR----------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTK----------------- 345 (483)
Q Consensus 299 ~~N~~Ea~~l~g~~----------------~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~----------------- 345 (483)
.+|..|+..|+|.. +..++++.+.++. + . +|+--|+.- ++.++
T Consensus 367 tpN~~E~~~L~g~~~~~~~GVds~~~~~~~d~~~aA~~lA~~~-~-~-vVvlkG~~D-~I~dg~~~~~~~~~~~~~~~~~ 442 (540)
T 3nl6_A 367 KGNSSEILGLAELNKERMKGVDASSGISNELLIQATKIVAFKY-K-T-VAVCTGEFD-FIADGTIEGKYSLSKGTNGTSV 442 (540)
T ss_dssp EECHHHHHHHTTC--------------CCHHHHHHHHHHHHHT-T-S-EEEECSSSE-EEEECCGGGBCCSSSCCSSCCT
T ss_pred CCCHHHHHHHhCCCcccccccccccccCHHHHHHHHHHHHHHh-C-C-EEEEcCCCe-EEECCCcccccccccccccccc
Confidence 99999999998853 1245677787764 2 3 444445443 44444
Q ss_pred --CeeEEecCcc-ccccCCCCchHHHHHHHHHHHHcCC---CHHHHHHHHHHH
Q 011562 346 --SSISCAPAFK-VNVTDTVGCGDSFVAAVAFGFIHNM---PTVNTLTIANAV 392 (483)
Q Consensus 346 --~~~~~vpa~~-v~vvDttGAGDaF~Ag~l~gl~~g~---~l~~al~~A~aa 392 (483)
+..+.++.-. .-.-.++|.||++.|.+.+.+..+. ++.+|+..|...
T Consensus 443 ~~~~~~~~~~G~~~~m~~vtGtGc~Lsg~Iaa~la~~~~~~~~~~Aa~~a~~~ 495 (540)
T 3nl6_A 443 EDIPCVAVEAGPIEIMGDITASGCSLGSTIACMIGGQPSEGNLFHAVVAGVML 495 (540)
T ss_dssp TSSCEEEEECSCCGGGGSSTTHHHHHHHHHHHHHHTCCTTCBHHHHHHHHHHH
T ss_pred CCccEEEECCCChhhccCccCchHHHHHHHHHHHhcCcCCCCHHHHHHHHHHH
Confidence 3455555443 2233479999999988888888887 577777766543
No 69
>3hpd_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, ATP-binding, M metal-binding, nucleotide-binding, thiamine biosynthesis; 1.85A {Pyrococcus horikoshii}
Probab=98.27 E-value=1.1e-05 Score=76.72 Aligned_cols=156 Identities=19% Similarity=0.099 Sum_probs=95.1
Q ss_pred HHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhh-cCCCEEEcCHHH
Q 011562 226 EVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFL-STSDVLLLTSDE 304 (483)
Q Consensus 226 ~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll-~~~dil~~N~~E 304 (483)
+..+..+.++.++++--.+.....+.+....+.+++.++|+++||...+. ...-.+...+++ .+.++|.+|..|
T Consensus 49 E~~e~~~~a~al~iNiGtl~~~~~~~m~~A~~~A~~~~~PvVLDPVg~ga-----s~~R~~~~~~ll~~~~~vIrgN~sE 123 (265)
T 3hpd_A 49 ELEEMIRLADAVVINIGTLDSGWRRSMVKATEIANELGKPIVLDPVGAGA-----TKFRTRVSLEILSRGVDVLKGNFGE 123 (265)
T ss_dssp THHHHHHHCSEEEEECTTCCHHHHHHHHHHHHHHHHHTCCEEEECTTBTT-----BHHHHHHHHHHHHHCCSEEEEEHHH
T ss_pred HHHHHHHHCCeEEEECCCCChHHHHHHHHHHHHHHHcCCCEEEcCCCCCC-----cHHHHHHHHHHHhcCCcEEcCCHHH
Confidence 34445667888999821112222345666678889999999999965432 122223334444 378999999999
Q ss_pred HHHhhCCC--------------CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHH
Q 011562 305 AESLTGLR--------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVA 370 (483)
Q Consensus 305 a~~l~g~~--------------~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~A 370 (483)
...|.|.. +..++++.+.++. + . +|+--|+. -++.++++.+.++.-..-.-..+|.||++.|
T Consensus 124 i~~L~g~~~~~~gvds~~~~~~d~~~~a~~lA~~~-~-~-vVvlkG~~-d~I~dg~~~~~~~~G~~~m~~vtGtGc~Lsg 199 (265)
T 3hpd_A 124 ISALLGEEGKTRGVDSLEYGEEEAKKLTMNAAREF-N-T-TVAVTGAV-DYVSDGRRTFAVYNGHELLGRVTGTGCMVAA 199 (265)
T ss_dssp HHHHHHHHC----------CHHHHHHHHHHHHHHT-T-S-EEEEESSS-EEEECSSCEEEECCCCGGGGGSTTHHHHHHH
T ss_pred HHHHhcccCCCCCccCccccHHHHHHHHHHHHHHh-C-C-EEEEeCCC-eEEEcCCEEEEECCCChHhhcCCccchHHHH
Confidence 99997631 2456677777763 2 2 44444544 4555556666655433333345899999766
Q ss_pred HHHHHHHcCCCHHHHHHHHHH
Q 011562 371 AVAFGFIHNMPTVNTLTIANA 391 (483)
Q Consensus 371 g~l~gl~~g~~l~~al~~A~a 391 (483)
.+.+.+..+ +..+|...|..
T Consensus 200 ~iaa~lA~~-~~~~Aa~~a~~ 219 (265)
T 3hpd_A 200 LTGAFVAVT-EPLKATTSALV 219 (265)
T ss_dssp HHHHHHTTS-CHHHHHHHHHH
T ss_pred HHHHHHhcC-ChHHHHHHHHH
Confidence 555555556 55566655554
No 70
>3drw_A ADP-specific phosphofructokinase; AMP, GLYC kinase, magnesium, metal-binding, transferase, structural G PSI-2, protein structure initiative; HET: AMP; 1.90A {Pyrococcus horikoshii} PDB: 1u2x_A
Probab=98.11 E-value=1.3e-05 Score=81.77 Aligned_cols=176 Identities=10% Similarity=-0.009 Sum_probs=93.3
Q ss_pred CccccCCcHHHHHHHHHHcCC-ceEEEEEecCChhhHHHHHHHHHcCCCccce--------e----ec--CCCCccccCc
Q 011562 123 KQYWEAGGNCNVAIAAARLGL-DCVTIGHVGNEIYGRFLLDVLQDEGIGMVGM--------S----ED--TDGVDTSSAS 187 (483)
Q Consensus 123 ~~~~~GGg~~NvA~~larLG~-~v~lig~vG~D~~g~~i~~~L~~~gId~~~v--------~----~~--~~~~~~~~~~ 187 (483)
...+.||.+.-+|..++++|. +|.+.+..+.. ...+.| ..+|-.-.+ . .. +.......-.
T Consensus 112 ~~~~~GGnA~imAn~La~lg~~~Vi~~~p~~sk----~~~~ll-~~~i~~p~~e~g~l~l~~~~ea~~~~~~~~iH~I~E 186 (474)
T 3drw_A 112 EEERLGGQAGIIANTLAGLKIRKVIAYTPFLPK----RLAELF-KKGVLYPVVENGELQFKPIQEAYREGDPLKINRIFE 186 (474)
T ss_dssp SEEEEESHHHHHHHHHHHTTCSEEEECCSCCCH----HHHTTS-CTTEEEEEESSSSEEEEEGGGCCCTTCCCCEEEEEE
T ss_pred ceEecCChHHHHHHHHHHcCCCcEEEecCcCCH----HHHHhc-CCcceeecccCCceeecCchhhhccCCCCCcEEEEE
Confidence 356789999999999999999 58777766654 334444 333322210 0 00 0000001112
Q ss_pred ccceeEEE-----EECCCCCcccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecCCCCCC------C-HHH---H
Q 011562 188 YETLLCWV-----LVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDEL------S-PAL---I 252 (483)
Q Consensus 188 ~~T~~~~v-----~vd~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~~~~~~------~-~~~---~ 252 (483)
|+.+..+- ++-+-..|-+++....+. ......+.+.+.+.+..+.+|.++++|+....- . .+. .
T Consensus 187 y~~G~~~~~~~~~~~aPraNRfI~s~D~~N~-~~l~~~e~f~~~l~e~~~~~d~~vLSGlq~m~~~y~dg~~~~~~l~~~ 265 (474)
T 3drw_A 187 FRKGLKFKLGDETIEIPNSGRFIVSARFESI-SRIETREDIKPFLGEIGKEVDGAIFSGYQGLRTKYSDGKDANYYLRRA 265 (474)
T ss_dssp ECTTCEEESSSCEEECCSCEEEEEEECCSGG-GCCSCCTTTGGGHHHHHHHCSEEEECCGGGCCSBCTTSCBHHHHHHHH
T ss_pred cCCCCeeecCCceEEccCCCeEEEEcCCCCH-HhccccHHHHHHHHHhhcCCCEEEEeccccccccccccccHHHHHHHH
Confidence 22222222 111111111221111111 001111222233333445799999999975222 2 222 3
Q ss_pred HHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHH-HHHHhhhcCCCEEEcCHHHHHHhhC
Q 011562 253 ISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQ-RALSYFLSTSDVLLLTSDEAESLTG 310 (483)
Q Consensus 253 ~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~-~~l~~ll~~~dil~~N~~Ea~~l~g 310 (483)
.+.++..+..+++|-+..+... ..+.+ ..+..+++++|.+-+|++|+..+.+
T Consensus 266 ~e~i~~l~~~~~~iH~E~As~~------~~~l~~~i~~~i~p~vDSlGmNEqELa~l~~ 318 (474)
T 3drw_A 266 KEDIIEFKEKDVKIHVEFASVQ------DRKLRKKIITNILPFVDSVGIDEAEIAQILS 318 (474)
T ss_dssp HHHHHHHHHTTCEEEEECCCCS------CHHHHHHHHHHTGGGSSEEEEEHHHHHHHHH
T ss_pred HHHHHHhcCCCCeEEEEeCccc------cHHHHHHHHHHhcccccccccCHHHHHHHHH
Confidence 3555555678999999987542 24444 4466899999999999999998764
No 71
>1ua4_A Glucokinase, ADP-dependent glucokinase; transferase; HET: GLC BGC AMP; 1.90A {Pyrococcus furiosus} SCOP: c.72.1.3
Probab=97.88 E-value=4.3e-05 Score=78.08 Aligned_cols=171 Identities=11% Similarity=0.031 Sum_probs=92.9
Q ss_pred cccCCcHHHHHHHHHHcCCceEE--EEEecCChhhHHHHHHHHHcCCCccceeecCC-----CCccccCcccceeEEEEE
Q 011562 125 YWEAGGNCNVAIAAARLGLDCVT--IGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTD-----GVDTSSASYETLLCWVLV 197 (483)
Q Consensus 125 ~~~GGg~~NvA~~larLG~~v~l--ig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~-----~~~~~~~~~~T~~~~v~v 197 (483)
.+.||.+..+|..++++|.++.+ ++.+|.. +.+.|.+.+|..-.+ .... ... .....+....+|+-
T Consensus 108 ~~~GGnA~imAn~la~lg~~~vl~~~~~l~~~-----~~~lf~~~~i~~p~~-~~~~~~l~~~~e-~~~~~~~~iH~I~E 180 (455)
T 1ua4_A 108 LRMGGQAGIMANLLGGVYGVPVIVHVPQLSRL-----QANLFLDGPIYVPTL-ENGEVKLIHPKE-FSGDEENCIHYIYE 180 (455)
T ss_dssp EEEESHHHHHHHHHTTTTCCCEEECCSCCCHH-----HHTTSCSSSEEEEEE-ETTEEEEECGGG-CSCCCCCCEEEEEE
T ss_pred cccCCcHHHHHHHHHHcCCCEEEEeCCCCCHH-----HHHhcCCCCeEeecc-cCCccccccchh-hccCCCCCceEEEE
Confidence 37799999999999999999987 6666643 455554233433101 0000 000 00011233344444
Q ss_pred CCCCCccc----------ccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecCCC-CCCC-HHHHHHHHH---HHHHc
Q 011562 198 DPSQRHGF----------CSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGF-DELS-PALIISALE---YAAQV 262 (483)
Q Consensus 198 d~~g~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~~~-~~~~-~~~~~~li~---~a~~~ 262 (483)
-+.|..-. +...+.. .......+.+.+.+.+...++|.++++|+.. .+.+ .+.....++ .....
T Consensus 181 f~~G~~~~~~~aPraNRfI~s~D~~-n~~l~~~e~f~~~l~e~~~~~dl~vlSG~q~l~~~~~~~~~~~~l~~i~~L~~~ 259 (455)
T 1ua4_A 181 FPRGFRVFEFEAPRENRFIGSADDY-NTTLFIREEFRESFSEVIKNVQLAILSGLQALTKENYKEPFEIVKSNLEVLNER 259 (455)
T ss_dssp ECTTCEETTEECSSCEEEEEECCSS-GGGTCCCGGGSTTHHHHGGGCSEEEECCGGGCCTTTCHHHHHHHHHHHHHHHHT
T ss_pred cCCCCeecceeccccceeEEecCCC-cccCcccHHHHHHHHhhccCCcEEEEechhcccccchHHHHHHHHHHHHHhcCC
Confidence 44443211 1111111 0111112233333444456699999999975 2322 233332222 23667
Q ss_pred CCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhh
Q 011562 263 GTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLT 309 (483)
Q Consensus 263 g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~ 309 (483)
++++-++.+... ..+.+..+..+++++|.+-+|++|+..+.
T Consensus 260 ~~~iH~ElAs~~------~~~~~~~i~~ilp~vDSlGmNE~EL~~l~ 300 (455)
T 1ua4_A 260 EIPVHLEFAFTP------DEKVREEILNVLGMFYSVGLNEVELASIM 300 (455)
T ss_dssp TCCEEEECCCCC------CHHHHHHHHHHGGGCSEEEECHHHHHHHH
T ss_pred CceEEEEeCCcc------CHHHHHHHHhhhccCcccccCHHHHHHHH
Confidence 899999997543 34553433389999999999999998764
No 72
>1l2l_A ADP-dependent glucokinase; ADP glucokinase APO, transferase; 2.00A {Pyrococcus horikoshii} SCOP: c.72.1.3
Probab=97.55 E-value=0.0002 Score=73.00 Aligned_cols=74 Identities=14% Similarity=0.049 Sum_probs=50.1
Q ss_pred HhhcCCcEEEEecCCCCCC--CHH---HHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHH
Q 011562 229 TAIKHSKVLFCNGYGFDEL--SPA---LIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSD 303 (483)
Q Consensus 229 ~~l~~~~~v~isG~~~~~~--~~~---~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~ 303 (483)
+...++|.++++|+..-.. ... ...+.++..+..++++-+..+... ..+.+..+..+++++|.+-+|++
T Consensus 224 e~~~~~d~~vlSG~q~l~~~~~~~~~~~~~~~i~~L~~~~~~iH~E~As~~------~~~l~~~i~~ilp~vDSlGmNEq 297 (457)
T 1l2l_A 224 EIAKRSELAIISGLHPLTQENHGKPIKLVREHLKILNDLGIRAHLEFAFTP------DEVVRLEIVKLLKHFYSVGLNEV 297 (457)
T ss_dssp HHHTTCSEEEEECCTTCCTTTCHHHHHHHHHHHHHHHHTTCEEEEECCCCS------SHHHHHHHHHHGGGCSEEEECHH
T ss_pred hhccCCCEEEEeccccccccchhhhHHHHHHHHHHhcCCCCeEEEEECCcc------cHHHHHHHHhhccccccCccCHH
Confidence 3345699999999975333 222 122233333678999999987532 34544443389999999999999
Q ss_pred HHHHh
Q 011562 304 EAESL 308 (483)
Q Consensus 304 Ea~~l 308 (483)
|+..+
T Consensus 298 ELa~l 302 (457)
T 1l2l_A 298 ELASV 302 (457)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99874
No 73
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, , structural genomics, protein structure initiative; 2.60A {Helicobacter pylori}
Probab=97.47 E-value=0.00047 Score=71.04 Aligned_cols=166 Identities=15% Similarity=0.127 Sum_probs=101.7
Q ss_pred cCCcEEEEe-cCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhC
Q 011562 232 KHSKVLFCN-GYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTG 310 (483)
Q Consensus 232 ~~~~~v~is-G~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g 310 (483)
.++|.+++. |....+ .+ +.++++ .+ ++++|...- .. + .+...++...+++||..|+..|+|
T Consensus 291 ~~~~a~~iGPGlG~~~--~~-l~~~l~----~~-p~VlDADaL----~~--~----~~~~~~~~~~VlTPh~~E~~rL~g 352 (475)
T 3k5w_A 291 NLLSAFALGMGLENIP--KD-FNRWLE----LA-PCVLDAGVF----YH--K----EILQALEKEAVLTPHPKEFLSLLN 352 (475)
T ss_dssp SSCSEEEECTTCSSCC--TT-HHHHHH----HS-CEEEEGGGG----GS--G----GGGTTTTSSEEEECCHHHHHHHHH
T ss_pred cCCCEEEEcCCCCCCH--HH-HHHHHh----cC-CEEEECccc----CC--c----hhhhccCCCEEECCCHHHHHHHhC
Confidence 567888886 333222 12 444442 35 999998532 10 1 112334556899999999999986
Q ss_pred C-----C------CHHHHHHHHHHcCCCccEEEEEeCCCcEEEEECCeeEEecCccccccCCCCchHHHHHHHHHHHHcC
Q 011562 311 L-----R------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVNVTDTVGCGDSFVAAVAFGFIHN 379 (483)
Q Consensus 311 ~-----~------~~~~~~~~l~~~g~~~~~vVvT~G~~G~~~~~~~~~~~vpa~~v~vvDttGAGDaF~Ag~l~gl~~g 379 (483)
. + +..++++++.++.-+ ..|++| |..- ++.+++..+..+. ...-..+.|.||++.|.+.+.+.+|
T Consensus 353 ~~~~~v~~~~~~~d~~~aa~~la~~~g~-~~VvlK-G~~~-vI~~~~~~~~~~~-g~~~mat~GtGdvLsg~Iaa~lA~g 428 (475)
T 3k5w_A 353 LVGINISMLELLDNKLEIARDFSQKYPK-VVLLLK-GANT-LIAHQGQVFINIL-GSVALAKAGSGDVLAGLILSLLSQN 428 (475)
T ss_dssp HTSCCCCTTSGGGSCC--CHHHHHHCTT-EEEEEC-SSSE-EEEETTEEEEECC-CCGGGCSTTHHHHHHHHHHHHHHTT
T ss_pred CccCCCCcchhHHHHHHHHHHHHHHcCC-eEEEEe-CCCC-EEECCCEEEEECC-CCCCCCCCCHHHHHHHHHHHHHHcC
Confidence 4 2 335677788776412 345555 4333 4445555544432 3344568999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhcC
Q 011562 380 MPTVNTLTIANAVGAATAMGCGAGRNVATLERVIELMRASN 420 (483)
Q Consensus 380 ~~l~~al~~A~aaAa~~v~~~G~~~~~p~~~ev~~~l~~~~ 420 (483)
.++.+|+..|...-+.+-.... ...-....|+.+.+.+.+
T Consensus 429 ~~~~~Aa~~a~~lhg~ag~~a~-~~~~~~a~dl~~~l~~~~ 468 (475)
T 3k5w_A 429 YTPLDAAINASLAHALASLEFK-NNYALTPLDLIEKIKQLE 468 (475)
T ss_dssp CCHHHHHHHHHHHHHHGGGGCS-STTCCCHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHhc-cCCCcCHHHHHHHhhhhh
Confidence 9999999887666554443331 112347788888777654
No 74
>1gc5_A ADP-dependent glucokinase; ALFA/beta sandwichs, induced-fitting, transferase; HET: ADP; 2.30A {Thermococcus litoralis} SCOP: c.72.1.3
Probab=97.40 E-value=0.001 Score=67.92 Aligned_cols=168 Identities=11% Similarity=0.063 Sum_probs=88.2
Q ss_pred ccCCcHHHHHHHHHHcCCceEE--EEEecCChhhHHHHHHHHHcCCCccceeecCCCCcc-----ccCcccceeEEEEEC
Q 011562 126 WEAGGNCNVAIAAARLGLDCVT--IGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDT-----SSASYETLLCWVLVD 198 (483)
Q Consensus 126 ~~GGg~~NvA~~larLG~~v~l--ig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~-----~~~~~~T~~~~v~vd 198 (483)
+.||.+.-+|..++++|.++.+ ++.+| +...+.|...+|..-.+ .++.... ....-+.-.-+|+--
T Consensus 117 ~mGGnAgimAn~la~lg~~~vl~~~~~~s-----~~~~~l~~~~~i~~p~~--~~g~l~~~~~~ea~~~~~~~iH~I~Ey 189 (467)
T 1gc5_A 117 RIGGQAGIMANLLGGVYRIPTIVHVPQNP-----KLQAELFVDGPIYVPVF--EGNKLKLVHPKDAIAEEEELIHYIYEF 189 (467)
T ss_dssp EEESHHHHHHHHHHHTSCCCEEECCSCCC-----HHHHTTSCSSSEEEEEE--CSSCEEEECGGGSCCSCCCCEEEEEEE
T ss_pred ccCccHHHHHHHHHhcCCCEEEEcCCCCC-----HHHHHhcCCCCeeeeec--cCCceecccchhhccCCCCcceEEEEc
Confidence 7899999999999999999977 55544 44555554344432111 1110000 000011222233332
Q ss_pred CCCC-----------cccccccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecCCCCCC-------CHHHHHHH---HH
Q 011562 199 PSQR-----------HGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDEL-------SPALIISA---LE 257 (483)
Q Consensus 199 ~~g~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~~~~~~-------~~~~~~~l---i~ 257 (483)
+.|. |-+++....+. .....+.+.+.+.+...++|.++++|+..-.. ..+.+.++ ++
T Consensus 190 ~~G~~~~~~~aPraNRfI~s~D~~N~--~l~~~e~f~~~l~e~~~~~dl~vlSG~q~l~~~y~~g~~~~~~l~~~~~~l~ 267 (467)
T 1gc5_A 190 PRGFQVFDVQAPRENRFIANADDYNA--RVYMRREFREGFEEITRNVELAIISGLQVLKEYYPDGTTYKDVLDRVESHLN 267 (467)
T ss_dssp CSSCEETTEECSSCEEEEEECCSSTT--TTCCCHHHHHSHHHHHTTCSEEEECCGGGCCSBCTTSCBHHHHHHHHHHHHH
T ss_pred CCCCeecceeccCCceEEEecCCCCc--cccccHHHHHHHHhhccCCCEEEEechhcccCccCCchhHHHHHHHHHHHHH
Confidence 2222 11111111110 11111222222333445699999999975222 22333333 33
Q ss_pred HHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHh
Q 011562 258 YAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESL 308 (483)
Q Consensus 258 ~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l 308 (483)
.....++++-+..+... ..+.+..+..+++++|.+-+|++|+..+
T Consensus 268 ~l~~~~~~iH~E~As~~------~~~l~~~i~~ilp~vDSlGmNEqELa~l 312 (467)
T 1gc5_A 268 ILNRYNVKSHFEFAYTA------NRRVREALVELLPKFTSVGLNEVELASI 312 (467)
T ss_dssp HHHHTTCEEEEECCCCC------CHHHHHHHHHHGGGCSEEEECHHHHHHH
T ss_pred hhcCCCCeEEEEECCcc------cHHHHHHHHhhccccccCccCHHHHHHH
Confidence 32557899999987543 3444444449999999999999999843
No 75
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=78.43 E-value=20 Score=28.24 Aligned_cols=121 Identities=17% Similarity=0.175 Sum_probs=70.3
Q ss_pred HHHHHHHcCCceEEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCC
Q 011562 134 VAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSK 213 (483)
Q Consensus 134 vA~~larLG~~v~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~ 213 (483)
+..-+.|.|.++.++-.=-+..--+.-++.+++.|++...+. |
T Consensus 18 ivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtve----------------------d--------------- 60 (162)
T 2l82_A 18 IVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVE----------------------D--------------- 60 (162)
T ss_dssp HHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECC----------------------S---------------
T ss_pred HHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeec----------------------c---------------
Confidence 556678888888776533222223334456666777765331 0
Q ss_pred ChhhhhhhhccHHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhh-
Q 011562 214 EPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFL- 292 (483)
Q Consensus 214 ~~~~~~~~~l~~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll- 292 (483)
..++.+. ..+++.....-|++++- ..-..+.+...++.|+++|+.+++--+.. .....++.-.++-
T Consensus 61 --kedfren-ireiwerypqldvvviv----ttddkewikdfieeakergvevfvvynnk------dddrrkeaqqefrs 127 (162)
T 2l82_A 61 --KEDFREN-IREIWERYPQLDVVVIV----TTDDKEWIKDFIEEAKERGVEVFVVYNNK------DDDRRKEAQQEFRS 127 (162)
T ss_dssp --HHHHHHH-HHHHHHHCTTCCEEEEE----ECCCHHHHHHHHHHHHHTTCEEEEEEECS------CHHHHHHHHHHHCC
T ss_pred --HHHHHHH-HHHHHHhCCCCcEEEEE----ecCcHHHHHHHHHHHHhcCcEEEEEecCC------CchhHHHHHHHhhh
Confidence 1111111 24455566777887765 35568899999999999999988754321 1122223333333
Q ss_pred cCCCEEEcCHHH
Q 011562 293 STSDVLLLTSDE 304 (483)
Q Consensus 293 ~~~dil~~N~~E 304 (483)
..+|+-..+..|
T Consensus 128 dgvdvrtvsdke 139 (162)
T 2l82_A 128 DGVDVRTVSDKE 139 (162)
T ss_dssp SSCEEEEESSHH
T ss_pred cCceeeecCCHH
Confidence 367888776554
No 76
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=62.43 E-value=67 Score=27.30 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=51.0
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEc-----CHHHHHHhh
Q 011562 235 KVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLL-----TSDEAESLT 309 (483)
Q Consensus 235 ~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~-----N~~Ea~~l~ 309 (483)
+.|.++| .-+-+.++.+.++++.+++.|..+.+..++.. . .+.+..+++..|.+.+ +.+....+.
T Consensus 5 ~~v~~tG-GEPll~~~~~~~l~~~~~~~g~~~~l~TNG~l------~---~~~~~~l~~~~d~v~isld~~~~~~~~~~~ 74 (182)
T 3can_A 5 GGVTFCG-GEPLLHPEFLIDILKRCGQQGIHRAVDTTLLA------R---KETVDEVMRNCELLLIDLKSMDSTVHQTFC 74 (182)
T ss_dssp CCEEECS-STGGGSHHHHHHHHHHHHHTTCCEEEECTTCC------C---HHHHHHHHHTCSEEEEECCCSCHHHHHHHH
T ss_pred CEEEEEc-ccccCCHHHHHHHHHHHHHCCCcEEEECCCCC------C---HHHHHHHHhhCCEEEEECCCCCHHHHHHHh
Confidence 4566666 22223456667999999999999999987641 1 2345566666787654 455555666
Q ss_pred CCC--CHHHHHHHHHHcCC
Q 011562 310 GLR--NPITAGQELLRKGL 326 (483)
Q Consensus 310 g~~--~~~~~~~~l~~~g~ 326 (483)
|.. ...+..+.+.+.|.
T Consensus 75 g~~~~~i~~~i~~l~~~g~ 93 (182)
T 3can_A 75 DVPNELILKNIRRVAEADF 93 (182)
T ss_dssp SSCSHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhCCC
Confidence 643 23445566666554
No 77
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=48.81 E-value=14 Score=34.57 Aligned_cols=19 Identities=11% Similarity=0.111 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCceEEEE
Q 011562 131 NCNVAIAAARLGLDCVTIG 149 (483)
Q Consensus 131 ~~NvA~~larLG~~v~lig 149 (483)
|..+|..|+|+|.+|.++-
T Consensus 18 GlsAA~~lar~g~~v~lie 36 (304)
T 4fk1_A 18 GLNASLVLGRARKQIALFD 36 (304)
T ss_dssp HHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHCCCCEEEEe
Confidence 4678899999999999885
No 78
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=43.74 E-value=67 Score=23.15 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhcCCCcchhhHHHHhhhcccccCcccccc
Q 011562 387 TIANAVGAATAMGCGAGRNVATLERVIELMRASNLNEDNAFWNELLDQNVNAENITFLSR 446 (483)
Q Consensus 387 ~~A~aaAa~~v~~~G~~~~~p~~~ev~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 446 (483)
++++..||+-+...| ..|+.++|.+.++...++ -+.+|-.+.-+.+++..+.=|+.
T Consensus 6 ela~~YAAllL~~~g---~~~ta~~I~~il~AaGve-ve~~~~~lf~~aL~gk~I~elI~ 61 (69)
T 2lbf_A 6 ELACIYSALILHDDE---VTVTEDKINALIKAAGVN-VEPFWPGLFAKALANVNIGSLIC 61 (69)
T ss_dssp HHHHHHHHHHHHHHT---CCCCHHHHHHHHHHHTCC-CCTHHHHHHHHHTTTSCGGGGGT
T ss_pred HHHHHHHHHHHHcCC---CCCCHHHHHHHHHHcCCC-ccHHHHHHHHHHHCCCCHHHHHH
Confidence 466777777776655 278999999999999985 45677777667688888888876
No 79
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=43.05 E-value=23 Score=31.72 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=19.5
Q ss_pred CCc--HHHHHHHHHHcCCceEEEEE
Q 011562 128 AGG--NCNVAIAAARLGLDCVTIGH 150 (483)
Q Consensus 128 GGg--~~NvA~~larLG~~v~lig~ 150 (483)
||| +.-+|..|+++|.+|.++-.
T Consensus 10 GgG~aGl~aA~~la~~g~~v~lie~ 34 (232)
T 2cul_A 10 GAGFSGAETAFWLAQKGVRVGLLTQ 34 (232)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred CcCHHHHHHHHHHHHCCCCEEEEec
Confidence 555 67899999999999999875
No 80
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=39.39 E-value=59 Score=27.88 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=17.5
Q ss_pred ChhhHHHHHHHHHcCCCccce
Q 011562 154 EIYGRFLLDVLQDEGIGMVGM 174 (483)
Q Consensus 154 D~~g~~i~~~L~~~gId~~~v 174 (483)
|.+|.+|.+.|++.|+++...
T Consensus 39 D~ng~~L~~~L~~~G~~v~~~ 59 (178)
T 3iwt_A 39 DESGDIIKQLLIENGHKIIGY 59 (178)
T ss_dssp CHHHHHHHHHHHHTTCEEEEE
T ss_pred cchHHHHHHHHHHCCCEEEEE
Confidence 888999999999999876543
No 81
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A*
Probab=39.33 E-value=38 Score=33.35 Aligned_cols=139 Identities=13% Similarity=0.144 Sum_probs=70.3
Q ss_pred CCcHHHHHHHHHHcCCc-eEEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccc
Q 011562 128 AGGNCNVAIAAARLGLD-CVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFC 206 (483)
Q Consensus 128 GGg~~NvA~~larLG~~-v~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~ 206 (483)
||+|.|+.-.+.+.|.+ |.|+. +-.| .+.|+.-..+.. +.+...-.++.
T Consensus 26 GG~G~NaVn~m~~~~~~gvefia-iNTD------~qaL~~s~a~~k----------------------i~lG~~~t~Gl- 75 (396)
T 4dxd_A 26 GGGGNNAVNRMIDHGMNNVEFIA-INTD------GQALNLSKAESK----------------------IQIGEKLTRGL- 75 (396)
T ss_dssp HHHHHHHHHHHHHHCCCSEEEEE-EESC------HHHHHTCCCSEE----------------------EECCHHHHTTS-
T ss_pred CCcHHHHHHHHHHhCCCCceEEE-EECC------HHHHhcCCCccE----------------------EEcCccccCCC-
Confidence 67788999888888864 55544 4567 355654333322 11111000000
Q ss_pred cccCCCCChhhhhhhhccHHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEE-EcCCCCCCCCCCCCh---
Q 011562 207 SRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIF-FDPGPRGKSLSSGTP--- 282 (483)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~-~D~~~~~~~l~~~~~--- 282 (483)
.++-......+..+...+.+.+.++.||.|++....-+........-+++.+++.++.++ +=+.|.. ..+..
T Consensus 76 -GAG~np~vG~eaaee~~d~Ir~~le~~D~ffItagmGGGTGSGaapvIaeiake~g~LtvsVVt~Pf~---~Eg~~r~y 151 (396)
T 4dxd_A 76 -GAGANPEIGKKAAEESREQIEDAIQGADMVFVTSGMGGGTGTGAAPVVAKIAKEMGALTVGVVTRPFS---FEGRKRQT 151 (396)
T ss_dssp -CCTTCHHHHHHHHHHTHHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCG---GGCHHHHH
T ss_pred -CCCCChHHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCccccHHHHHHHHHHhcCCceEEEEeCCcc---ccchHHHH
Confidence 001111112233344456677888999998877443333323333345677788886533 2222221 11111
Q ss_pred HHHHHHHhhhcCCCEEEc
Q 011562 283 EEQRALSYFLSTSDVLLL 300 (483)
Q Consensus 283 ~~~~~l~~ll~~~dil~~ 300 (483)
.....+..+.+++|.+++
T Consensus 152 NA~lgl~~L~e~vD~vIv 169 (396)
T 4dxd_A 152 QAAAGVEAMKAAVDTLIV 169 (396)
T ss_dssp HHHHHHHHHHHHSSEEEE
T ss_pred HHHHHHHHHHhhCCEEEE
Confidence 233456778889996654
No 82
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1
Probab=39.31 E-value=87 Score=30.37 Aligned_cols=78 Identities=10% Similarity=0.071 Sum_probs=44.7
Q ss_pred hhhccHHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEE-EcCCCCCCCCCCCC---hHHHHHHHhhhcCC
Q 011562 220 MNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIF-FDPGPRGKSLSSGT---PEEQRALSYFLSTS 295 (483)
Q Consensus 220 ~~~l~~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~-~D~~~~~~~l~~~~---~~~~~~l~~ll~~~ 295 (483)
.+...+.+.+.++.+|.|++....-+......-.-+++.+++.++.++ +=+.|.. ..+. ......+.++.+++
T Consensus 92 aee~~d~I~~~le~~d~~~i~as~GGGTGSG~ap~la~~~ke~g~lt~~Vvt~Pf~---~Eg~~~~~nA~~~l~~L~e~~ 168 (353)
T 1w5f_A 92 ALESEEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVAIVTTPFY---FEGPERLKKAIEGLKKLRKHV 168 (353)
T ss_dssp HHHTHHHHHHHTTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCG---GGCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHccCCEEEEEeccCCCccccHHHHHHHHHHHhCCcEEEEEeCCcc---cccchhHHHHHHHHHHHHhhC
Confidence 344446677888999998877443333333444456777888886543 2222221 1111 12334567888999
Q ss_pred CEEEc
Q 011562 296 DVLLL 300 (483)
Q Consensus 296 dil~~ 300 (483)
|.+++
T Consensus 169 D~~iv 173 (353)
T 1w5f_A 169 DTLIK 173 (353)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 97764
No 83
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=39.01 E-value=1.8e+02 Score=26.65 Aligned_cols=97 Identities=12% Similarity=0.135 Sum_probs=57.6
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc-CCCEEEc-----CHHHHH
Q 011562 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS-TSDVLLL-----TSDEAE 306 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~-~~dil~~-----N~~Ea~ 306 (483)
.+|++=+.- ..+.+...++++.+++.+++|++--..... ....++....+..+.. .+|++++ +.++..
T Consensus 113 ~~d~iDvEl----~~~~~~~~~l~~~a~~~~~kiI~S~Hdf~~--TP~~~el~~~~~~~~~~gaDIvKia~~~~~~~D~l 186 (258)
T 4h3d_A 113 LVDLIDVEL----FMGDEVIDEVVNFAHKKEVKVIISNHDFNK--TPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVL 186 (258)
T ss_dssp CCSEEEEEG----GGCHHHHHHHHHHHHHTTCEEEEEEEESSC--CCCHHHHHHHHHHHHHTTCSEEEEEECCSSHHHHH
T ss_pred CchhhHHhh----hccHHHHHHHHHHHHhCCCEEEEEEecCCC--CCCHHHHHHHHHHHHHhCCCEEEEEEccCCHHHHH
Confidence 378887772 345678888999999999998874321111 1112344444555554 4799875 444444
Q ss_pred HhhCCCCHHHHHHHHHHcCCCccEEEEEeCCCcEE
Q 011562 307 SLTGLRNPITAGQELLRKGLRTKWVVVKMGPRGSI 341 (483)
Q Consensus 307 ~l~g~~~~~~~~~~l~~~g~~~~~vVvT~G~~G~~ 341 (483)
.+ .++...+.+...+.+.+.+.+|+.|.+
T Consensus 187 ~L------l~~~~~~~~~~~~~P~I~~~MG~~G~~ 215 (258)
T 4h3d_A 187 VL------LEATNEMFKIYADRPIITMSMSGMGVI 215 (258)
T ss_dssp HH------HHHHHHHHHHTCSSCBEEEECTGGGGG
T ss_pred HH------HHHHHHHHHhcCCCCEEEEeCCCCChH
Confidence 43 233444444333336788999999853
No 84
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A*
Probab=37.94 E-value=1.2e+02 Score=29.49 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=45.9
Q ss_pred hhccHHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEE-EcCCCCCCCCCCCC---hHHHHHHHhhhcCCC
Q 011562 221 NKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIF-FDPGPRGKSLSSGT---PEEQRALSYFLSTSD 296 (483)
Q Consensus 221 ~~l~~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~-~D~~~~~~~l~~~~---~~~~~~l~~ll~~~d 296 (483)
+...+.+.+.++.+|.+++....-+........-+++.+++.++.++ +=+.|.. ..+. ......+..+..++|
T Consensus 109 ee~~d~Ir~~le~~D~l~i~as~GGGTGSG~ap~lae~lke~~~lt~~Vv~~Pf~---~eg~~~~ynA~~~l~~L~e~~D 185 (364)
T 2vap_A 109 KESAEEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFV---MEGKVRMKNAMEGLERLKQHTD 185 (364)
T ss_dssp HHTHHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCG---GGCHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhcCCEEEEeccCCCCCCCChHHHHHHHHHHhCCcEEEEeCCCcc---ccchhHHHHHHHHHHHHHHhCC
Confidence 34446677788999998876443333334444556677777776533 3232221 1111 123344677889999
Q ss_pred EEEc--CHHH
Q 011562 297 VLLL--TSDE 304 (483)
Q Consensus 297 il~~--N~~E 304 (483)
.+++ |+.=
T Consensus 186 ~~ividNeaL 195 (364)
T 2vap_A 186 TLVVIPNEKL 195 (364)
T ss_dssp EEEEEEGGGH
T ss_pred eEEEEcHHHH
Confidence 7764 5543
No 85
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*
Probab=37.27 E-value=1.9e+02 Score=26.76 Aligned_cols=95 Identities=15% Similarity=0.145 Sum_probs=57.0
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc-CCCEEEc-----CHHHHHH
Q 011562 234 SKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS-TSDVLLL-----TSDEAES 307 (483)
Q Consensus 234 ~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~-~~dil~~-----N~~Ea~~ 307 (483)
+|+|=+.- ..+.+.+.++++.+++.+++|+..--.... ....++..+.+..... .+|++++ +.++...
T Consensus 134 ~dyIDvEl----~~~~~~~~~l~~~a~~~~~kvI~S~Hdf~~--tP~~~el~~~~~~~~~~GaDIvKia~~a~s~~Dvl~ 207 (276)
T 3o1n_A 134 VDMIDLEL----FTGDDEVKATVGYAHQHNVAVIMSNHDFHK--TPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLT 207 (276)
T ss_dssp CSEEEEEG----GGCHHHHHHHHHHHHHTTCEEEEEEEESSC--CCCHHHHHHHHHHHHHTTCSEEEEEECCSSHHHHHH
T ss_pred CCEEEEEC----cCCHHHHHHHHHHHHhCCCEEEEEeecCCC--CcCHHHHHHHHHHHHHcCCCEEEEEecCCChHHHHH
Confidence 78888872 345678889999999999999874321111 1112445555555554 4799986 3444443
Q ss_pred hhCCCCHHHHHHHHHHcCCCccEEEEEeCCCcE
Q 011562 308 LTGLRNPITAGQELLRKGLRTKWVVVKMGPRGS 340 (483)
Q Consensus 308 l~g~~~~~~~~~~l~~~g~~~~~vVvT~G~~G~ 340 (483)
+ ..+...+.+...+.+.+.+.+|+.|.
T Consensus 208 L------l~~~~~~~~~~~~~PlIa~~MG~~G~ 234 (276)
T 3o1n_A 208 L------LTATVEMQERYADRPIITMSMSKTGV 234 (276)
T ss_dssp H------HHHHHHHHHHTCCSCCEEEECSGGGT
T ss_pred H------HHHHHHHHhcCCCCCEEEEECCCchh
Confidence 3 23333333322333679999999984
No 86
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=36.93 E-value=1.9e+02 Score=25.29 Aligned_cols=85 Identities=14% Similarity=0.212 Sum_probs=51.7
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEc-----CHHHHHHh
Q 011562 234 SKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLL-----TSDEAESL 308 (483)
Q Consensus 234 ~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~-----N~~Ea~~l 308 (483)
...|.++| .-+-..++.+.++++.+++.|..+.+..++.. ... .+.+..+++.+|.+.+ +.+....+
T Consensus 70 ~~~i~~~G-GEP~l~~~~l~~l~~~~~~~~~~i~i~Tng~~---~~~----~~~~~~l~~~~~~v~isld~~~~~~~~~~ 141 (245)
T 3c8f_A 70 GGGVTASG-GEAILQAEFVRDWFRACKKEGIHTCLDTNGFV---RRY----DPVIDELLEVTDLVMLDLKQMNDEIHQNL 141 (245)
T ss_dssp TCEEEEEE-SCGGGGHHHHHHHHHHHHTTTCCEEEEECCCC---CCC----CHHHHHHHHTCSEEEEECCCSSHHHHHHH
T ss_pred CCeEEEEC-CCcCCCHHHHHHHHHHHHHcCCcEEEEeCCCc---CcC----HHHHHHHHHhCCEEEEeCCCCCHHHhhhc
Confidence 35677776 22223456678999999999998888886532 001 1234455555676554 56666666
Q ss_pred hCCC--CHHHHHHHHHHcCC
Q 011562 309 TGLR--NPITAGQELLRKGL 326 (483)
Q Consensus 309 ~g~~--~~~~~~~~l~~~g~ 326 (483)
.|.. ...+.++.+.+.|.
T Consensus 142 ~~~~~~~~~~~i~~l~~~g~ 161 (245)
T 3c8f_A 142 VGVSNHRTLEFAKYLANKNV 161 (245)
T ss_dssp HSSCSHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHhcCC
Confidence 6643 34556666777765
No 87
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=36.69 E-value=23 Score=33.99 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=17.7
Q ss_pred CCc--HHHHHHHHHHcCCceEEE
Q 011562 128 AGG--NCNVAIAAARLGLDCVTI 148 (483)
Q Consensus 128 GGg--~~NvA~~larLG~~v~li 148 (483)
||| |.-+|..|++.|++|.++
T Consensus 11 GaGpaGl~~A~~La~~G~~V~v~ 33 (397)
T 3oz2_A 11 GGGPGGSTAARYAAKYGLKTLMI 33 (397)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEE
T ss_pred CcCHHHHHHHHHHHHCCCcEEEE
Confidence 454 568999999999999988
No 88
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=36.67 E-value=2.2e+02 Score=26.03 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcCCceEEEEE
Q 011562 131 NCNVAIAAARLGLDCVTIGH 150 (483)
Q Consensus 131 ~~NvA~~larLG~~v~lig~ 150 (483)
|.+++..|.+.|.+|..++.
T Consensus 17 G~~l~~~L~~~g~~V~~~~R 36 (313)
T 1qyd_A 17 GKRIVNASISLGHPTYVLFR 36 (313)
T ss_dssp HHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHHhCCCcEEEEEC
Confidence 77888888888988876654
No 89
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=35.46 E-value=28 Score=28.14 Aligned_cols=78 Identities=15% Similarity=0.162 Sum_probs=56.8
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEEcCHHHHHHhhCCC
Q 011562 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR 312 (483)
Q Consensus 233 ~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~~N~~Ea~~l~g~~ 312 (483)
.++.+..+|+ ++.+.+..+.+.++.+++.++.||...+ ...+..+.+.++.+...++...++ |.+
T Consensus 26 ~~~iI~t~Gs----i~~~~l~~I~~~~~~r~VIi~TD~D~~G-------ekIRk~i~~~lp~~~hafi~r~~~----gVE 90 (119)
T 2fcj_A 26 PVVIVCTNGT----ISDARLEELADELEGYDVYLLADADEAG-------EKLRRQFRRMFPEAEHLYIDRAYR----EVA 90 (119)
T ss_dssp CCEEEECCSC----CCHHHHHHHHHHTTTSEEEEECCSSHHH-------HHHHHHHHHHCTTSEEECCCTTTC----STT
T ss_pred CCCEEEeCCc----cCHHHHHHHHHHhcCCCEEEEECCCccH-------HHHHHHHHHHCCCCcEEeccCCcc----Ccc
Confidence 6788888874 5777778888887788888899996443 345667788999999888887763 544
Q ss_pred --CHHHHHHHHHHcC
Q 011562 313 --NPITAGQELLRKG 325 (483)
Q Consensus 313 --~~~~~~~~l~~~g 325 (483)
+.....+.|.+..
T Consensus 91 ~a~~~~I~~aL~~~~ 105 (119)
T 2fcj_A 91 AAPIWHLAQVLLRAR 105 (119)
T ss_dssp TSCHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHhcc
Confidence 4566666666653
No 90
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=35.38 E-value=58 Score=28.10 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=14.2
Q ss_pred ChhhHHHHHHHHHcCCCccc
Q 011562 154 EIYGRFLLDVLQDEGIGMVG 173 (483)
Q Consensus 154 D~~g~~i~~~L~~~gId~~~ 173 (483)
|.++.++.+.|++.|++...
T Consensus 22 DtN~~~l~~~L~~~G~~v~~ 41 (172)
T 3kbq_A 22 NTNAAFIGNFLTYHGYQVRR 41 (172)
T ss_dssp CHHHHHHHHHHHHTTCEEEE
T ss_pred eHHHHHHHHHHHHCCCEEEE
Confidence 56777777777777776543
No 91
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=35.36 E-value=1.2e+02 Score=28.54 Aligned_cols=22 Identities=18% Similarity=0.049 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCceEEEEEec
Q 011562 131 NCNVAIAAARLGLDCVTIGHVG 152 (483)
Q Consensus 131 ~~NvA~~larLG~~v~lig~vG 152 (483)
|..++..|.+.|.+|..++.-.
T Consensus 23 G~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 23 GQFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp HHHHHHHHHHTTCCEEEEECSS
T ss_pred HHHHHHHHHHCCCCEEEEECCC
Confidence 6788888988998888777643
No 92
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=29.74 E-value=42 Score=26.71 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhcCCCcchhhHHHHhhhcccccCccccccccccC
Q 011562 387 TIANAVGAATAMGCGAGRNVATLERVIELMRASNLNEDNAFWNELLDQNVNAENITFLSRFGING 451 (483)
Q Consensus 387 ~~A~aaAa~~v~~~G~~~~~p~~~ev~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 451 (483)
.+|+..+++.+..-| ..|+.++|.++++...++ -+.+|-.+.-..+++..+.=|+.++..|
T Consensus 5 ela~~YaaLiL~d~~---~~itad~I~~ilkAaGve-Ve~~~~~lfakaL~gknI~eLI~sv~~g 65 (110)
T 3iz5_t 5 EVACTLAALILHDDG---IPITSEKIATVVKAAGIK-VEAYWPALFAKLLEKRSVDDLILSVGSG 65 (110)
T ss_dssp -CHHHHHHHHHHHHT---CCCSHHHHHHHHHHHTCC-CCSHHHHHHHHHHTTCCHHHHHTCCC--
T ss_pred HHHHHHHHHHHcCCC---CCcChHHHHHHHHHhCCc-ccHHHHHHHHHHcCCCCHHHHHhcCCCc
Confidence 456777777776655 258999999999999885 5567887777778888887777544443
No 93
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=29.40 E-value=56 Score=25.77 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=26.6
Q ss_pred cCCCCchHHHHHHHHHHHHcC-CCHHHHHHH
Q 011562 359 TDTVGCGDSFVAAVAFGFIHN-MPTVNTLTI 388 (483)
Q Consensus 359 vDttGAGDaF~Ag~l~gl~~g-~~l~~al~~ 388 (483)
.|-.|-||..-|-++|+|++| .+.+||+.+
T Consensus 64 ~DKh~kGd~aEA~iAyAWleG~is~eEavei 94 (133)
T 1ztd_A 64 VDKHAKGDYAEALIAKAWLMGLISEREAVEI 94 (133)
T ss_dssp GGTTCHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred ccccCccHHHHHHHHHHHHhccccHHHHHHH
Confidence 578899999999999999998 588888876
No 94
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A*
Probab=28.74 E-value=1.3e+02 Score=29.60 Aligned_cols=78 Identities=10% Similarity=0.158 Sum_probs=43.7
Q ss_pred hhhccHHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEE-EcCCCCCCCCCCCC---hHHHHHHHhhhcCC
Q 011562 220 MNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIF-FDPGPRGKSLSSGT---PEEQRALSYFLSTS 295 (483)
Q Consensus 220 ~~~l~~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~-~D~~~~~~~l~~~~---~~~~~~l~~ll~~~ 295 (483)
.+...+.+.+.++.+|.|++....-+..-...-.-+++.+++.++.++ +=+.+.. ..+. ......+..+.+++
T Consensus 82 aee~~d~Ir~~le~~d~~fi~as~GGGTGSG~ap~laela~e~g~ltvsVv~~Pf~---~Eg~~~~~nA~l~l~~L~e~~ 158 (382)
T 1rq2_A 82 AEDAKDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTVGVVTRPFS---FEGKRRSNQAENGIAALRESC 158 (382)
T ss_dssp HHHTHHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHHTCEEEEEEEECCG---GGCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhCCEEEEEeecCCCccccHHHHHHHHHHHcCCcEEEEEecCcc---cccchHHHHHHHHHHHHHHhC
Confidence 344446677788899998877443333323333445667788886543 2222211 1111 12344577888899
Q ss_pred CEEEc
Q 011562 296 DVLLL 300 (483)
Q Consensus 296 dil~~ 300 (483)
|.+++
T Consensus 159 D~~iv 163 (382)
T 1rq2_A 159 DTLIV 163 (382)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 97765
No 95
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=27.87 E-value=51 Score=27.77 Aligned_cols=44 Identities=25% Similarity=0.248 Sum_probs=32.1
Q ss_pred CCc--HHHHHHHHHHcCCceEEEEEec--------------------CChhhHHHHHHHHHcCCCc
Q 011562 128 AGG--NCNVAIAAARLGLDCVTIGHVG--------------------NEIYGRFLLDVLQDEGIGM 171 (483)
Q Consensus 128 GGg--~~NvA~~larLG~~v~lig~vG--------------------~D~~g~~i~~~L~~~gId~ 171 (483)
||| +.-.|..|+++|.+|.++-.-. .....+.+.+.+++.||+.
T Consensus 8 GgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v 73 (180)
T 2ywl_A 8 GGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEV 73 (180)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEE
Confidence 666 5789999999999999997421 1234566777788888764
No 96
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A*
Probab=26.10 E-value=74 Score=31.23 Aligned_cols=88 Identities=13% Similarity=0.150 Sum_probs=47.8
Q ss_pred hhhccHHHHHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEE-EcCCCCCCCCCCCCh---HHHHHHHhhhcCC
Q 011562 220 MNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIF-FDPGPRGKSLSSGTP---EEQRALSYFLSTS 295 (483)
Q Consensus 220 ~~~l~~~~~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~-~D~~~~~~~l~~~~~---~~~~~l~~ll~~~ 295 (483)
.+...+.+.+.++.+|.|++....-+..-...---+++.+++.++.++ +=+.+.. .++.. .....+..+.+++
T Consensus 82 aee~~d~Ir~~le~~D~ffI~asmGGGTGSG~apvla~~ake~g~ltvsVvt~Pf~---~Eg~~r~~nA~l~l~~L~e~~ 158 (382)
T 2vxy_A 82 AEESKEQIEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDLGALTVGVVTRPFT---FEGRKRQLQAAGGISAMKEAV 158 (382)
T ss_dssp HHHTHHHHHHHHTTCSEEEEEEESSSSHHHHHHHHHHHHHHHTTCEEEEEEEECCG---GGCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhCCEEEEEeccCCCCCCcHHHHHHHHHHHhCCCeEEEEeCCcc---cccchhHHHHHHHHHHHHHhC
Confidence 344456677788999998877443333333334445677777886543 2222211 11111 2344577888899
Q ss_pred CEEEc-CHHHHHHhhC
Q 011562 296 DVLLL-TSDEAESLTG 310 (483)
Q Consensus 296 dil~~-N~~Ea~~l~g 310 (483)
|.+++ .-+-+..++.
T Consensus 159 D~~ividNeaL~~i~~ 174 (382)
T 2vxy_A 159 DTLIVIPNDRILEIVD 174 (382)
T ss_dssp SEEEEEEHHHHHHHSC
T ss_pred CEEEEEccHHHHHHHH
Confidence 97664 2233344443
No 97
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}
Probab=26.00 E-value=3.2e+02 Score=27.40 Aligned_cols=140 Identities=17% Similarity=0.115 Sum_probs=82.6
Q ss_pred HHHcCCceEEEEEecCChhhHHHHHHHHHcCCCccceeecCCCCccccCcccceeEEEEECCCCCcccccccCCCCChhh
Q 011562 138 AARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAF 217 (483)
Q Consensus 138 larLG~~v~lig~vG~D~~g~~i~~~L~~~gId~~~v~~~~~~~~~~~~~~~T~~~~v~vd~~g~~~~~~~~~~~~~~~~ 217 (483)
....|.+...++++-+-+.=..+++.|.+.|-+...+ .-++. ...
T Consensus 192 ~~~~~vD~Ia~SfVr~a~Dv~~~r~~l~~~g~~~~ii--------------------aKIE~--------------~ea- 236 (461)
T 3qtg_A 192 PIRDNIDYVAISLAKSCKDVDSVRSLLTELGFQSQVA--------------------VKIET--------------KGA- 236 (461)
T ss_dssp GGGGGCCEEEECSCCSHHHHHHHHHHHHHTTCCCEEE--------------------EEECS--------------HHH-
T ss_pred HhhcCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEE--------------------EEECC--------------HHH-
Confidence 3456788888888887666777888888876432211 11221 001
Q ss_pred hhhhhccHHHHHhhcCCcEEEEe-cCCCCCCC----HHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCC---ChHHHHHHH
Q 011562 218 SWMNKLSAEVKTAIKHSKVLFCN-GYGFDELS----PALIISALEYAAQVGTSIFFDPGPRGKSLSSG---TPEEQRALS 289 (483)
Q Consensus 218 ~~~~~l~~~~~~~l~~~~~v~is-G~~~~~~~----~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~---~~~~~~~l~ 289 (483)
+ +.+.+.+..+|.+.+. |-+..+++ +....++++.|+++|+++++-.+--..+.... ..+.-+...
T Consensus 237 --v----~nldeIl~~sDgImVaRGDLgvei~~e~v~~~Qk~ii~~~~~~gkpvi~ATQMLeSMi~~p~PTRAEvsDVan 310 (461)
T 3qtg_A 237 --V----NNLEELVQCSDYVVVARGDLGLHYGLDALPIVQRRIVHTSLKYGKPIAVATQLLDSMQSSPIPTRAEINDVFT 310 (461)
T ss_dssp --H----HTHHHHHHTCSEEEEEHHHHTTTSCTTTHHHHHHHHHHHHHHTTCCEEEESSSSGGGGTCSSCCHHHHHHHHH
T ss_pred --H----HhHHHHHHhcccEEEccccccccCCHHHHHHHHHHHHHHHHHhCCCEEEeccchHhhccCCCccHHHHHHHHH
Confidence 1 2233455668888887 33322332 45778899999999999998544222211111 223334455
Q ss_pred hhhcCCCEEEcCHHHHHHhhCCCCHHHHHHHHH
Q 011562 290 YFLSTSDVLLLTSDEAESLTGLRNPITAGQELL 322 (483)
Q Consensus 290 ~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~~l~ 322 (483)
.++..+|.+.++.+-+.- .-+.++.+.+.
T Consensus 311 AV~dGaDavMLSgETA~G----~yPveaV~~m~ 339 (461)
T 3qtg_A 311 TASMGVDSLWLTNETASG----KYPLAAVSWLS 339 (461)
T ss_dssp HHHTTCSEEEECHHHHTS----SCHHHHHHHHH
T ss_pred HHHhCCcEEEEcccccCC----CCHHHHHHHHH
Confidence 678899999999876542 23445544443
No 98
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=25.36 E-value=3.7e+02 Score=24.08 Aligned_cols=96 Identities=11% Similarity=0.044 Sum_probs=56.7
Q ss_pred CCcEEEEecCCCCCC--CHHHHHHHHHHHHHcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc-CCCEEEc-----CHHH
Q 011562 233 HSKVLFCNGYGFDEL--SPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS-TSDVLLL-----TSDE 304 (483)
Q Consensus 233 ~~~~v~isG~~~~~~--~~~~~~~li~~a~~~g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~-~~dil~~-----N~~E 304 (483)
.+|++=+.- .. +.+.+.++++.+++.+.+|+..-..... ....++..+.+..... .+|++++ +.++
T Consensus 97 ~~d~iDvEl----~~~~~~~~~~~l~~~~~~~~~kvI~S~Hdf~~--tp~~~el~~~~~~~~~~gaDivKia~~a~~~~D 170 (238)
T 1sfl_A 97 GIDMIDIEW----QADIDIEKHQRIITHLQQYNKEVIISHHNFES--TPPLDELQFIFFKMQKFNPEYVKLAVMPHNKND 170 (238)
T ss_dssp TCCEEEEEC----CTTSCHHHHHHHHHHHHHTTCEEEEEEEESSC--CCCHHHHHHHHHHHHTTCCSEEEEEECCSSHHH
T ss_pred CCCEEEEEc----cCCCChHHHHHHHHHHHhcCCEEEEEecCCCC--CcCHHHHHHHHHHHHHcCCCEEEEEecCCCHHH
Confidence 478888873 34 6778889999999999998874321111 1112344555555554 5699876 3444
Q ss_pred HHHhhCCCCHHHHHHHHHHcCCCccEEEEEeCCCcEE
Q 011562 305 AESLTGLRNPITAGQELLRKGLRTKWVVVKMGPRGSI 341 (483)
Q Consensus 305 a~~l~g~~~~~~~~~~l~~~g~~~~~vVvT~G~~G~~ 341 (483)
...+ ..+...+ +.+...+.+.+.+|+.|.+
T Consensus 171 ~l~l------l~~~~~~-~~~~~~P~I~~~MG~~G~~ 200 (238)
T 1sfl_A 171 VLNL------LQAMSTF-SDTMDCKVVGISMSKLGLI 200 (238)
T ss_dssp HHHH------HHHHHHH-HHHCSSEEEEEECTGGGHH
T ss_pred HHHH------HHHHHHH-hhcCCCCEEEEECCCCchH
Confidence 3333 2222333 2222336788999999853
No 99
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=24.41 E-value=2.8e+02 Score=23.02 Aligned_cols=26 Identities=4% Similarity=0.006 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHcCCCccEEEEEeCCCc
Q 011562 313 NPITAGQELLRKGLRTKWVVVKMGPRG 339 (483)
Q Consensus 313 ~~~~~~~~l~~~g~~~~~vVvT~G~~G 339 (483)
+..++.+.+.+. .+..-+|+..|+.+
T Consensus 124 d~~eai~~~~~~-~~~gDvVLv~Gsg~ 149 (163)
T 3mvn_A 124 DVDELVMRIVQQ-AKPNDHILIMSNGA 149 (163)
T ss_dssp SHHHHHHHHHHH-CCTTCEEEEECSSC
T ss_pred CHHHHHHHHHHh-CCCCCEEEEECCCC
Confidence 556666666553 11134777777765
No 100
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=24.19 E-value=58 Score=31.65 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCceEEEEE
Q 011562 131 NCNVAIAAARLGLDCVTIGH 150 (483)
Q Consensus 131 ~~NvA~~larLG~~v~lig~ 150 (483)
|.-+|..|++.|.+|.++=.
T Consensus 35 Gl~~A~~La~~G~~V~v~E~ 54 (407)
T 3rp8_A 35 GLSAAVALKQSGIDCDVYEA 54 (407)
T ss_dssp HHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHhCCCCEEEEeC
Confidence 56899999999999888853
No 101
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=23.20 E-value=76 Score=24.99 Aligned_cols=57 Identities=18% Similarity=0.274 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhcCCCcchhhHHHHhhhcccccCccccccc
Q 011562 387 TIANAVGAATAMGCGAGRNVATLERVIELMRASNLNEDNAFWNELLDQNVNAENITFLSRF 447 (483)
Q Consensus 387 ~~A~aaAa~~v~~~G~~~~~p~~~ev~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 447 (483)
++++..+++.+..-| ..|+.++|.++++...++ -+.+|-.+.-..+++..+.=|+..
T Consensus 4 ela~~YaaLiL~d~~---~~~tad~I~~ilkAaGve-Ve~~~~~lfa~aL~gknI~eLI~~ 60 (106)
T 3izc_t 4 ESALSYAALILADSE---IEISSEKLLTLTNAANVP-DENIWADIFAKALDGQNLKDLLVN 60 (106)
T ss_dssp -CHHHHHHHHHHHHT---CCCSHHHHHHHHHHHTCC-CCHHHHHHHHHHHTTCCHHHHTTC
T ss_pred HHHHHHHHHHHcCCC---CCCCHHHHHHHHHHcCCc-ccHHHHHHHHHHhcCCCHHHHHHh
Confidence 567777777775544 248999999999999885 556787777666888888777763
No 102
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=22.77 E-value=3e+02 Score=24.68 Aligned_cols=36 Identities=6% Similarity=-0.114 Sum_probs=22.4
Q ss_pred HHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEE
Q 011562 228 KTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFF 268 (483)
Q Consensus 228 ~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~ 268 (483)
.+.+.++|+|+.. .-..+.-..+.+.+++.+++++.
T Consensus 116 ~~~~~~~DvVi~~-----~d~~~~~~~l~~~~~~~~~p~i~ 151 (249)
T 1jw9_B 116 AALIAEHDLVLDC-----TDNVAVRNQLNAGCFAAKVPLVS 151 (249)
T ss_dssp HHHHHTSSEEEEC-----CSSHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHhCCCEEEEe-----CCCHHHHHHHHHHHHHcCCCEEE
Confidence 3456778888765 22345555666777777776543
No 103
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=22.74 E-value=4.5e+02 Score=24.13 Aligned_cols=91 Identities=11% Similarity=-0.026 Sum_probs=53.5
Q ss_pred hcCCcEEEEecCCCCCCCHHHHHHHHHHHHHc-CCeEEEcCCCCCCCCCCCChHHHHHHHhhhcCCCEEE-cCHHHHHHh
Q 011562 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQV-GTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLL-LTSDEAESL 308 (483)
Q Consensus 231 l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~-g~~v~~D~~~~~~~l~~~~~~~~~~l~~ll~~~dil~-~N~~Ea~~l 308 (483)
-..+|++-+.|.....-..+.+..+++..++. ++++++|.. .++..+.-.+.++.++++- +|..+ ..
T Consensus 45 ~~GAdiIDIg~~s~~~eE~~rv~~vi~~l~~~~~~pisIDT~---------~~~v~~aal~a~~Ga~iINdvs~~~-d~- 113 (271)
T 2yci_X 45 EKGAHYLDVNTGPTADDPVRVMEWLVKTIQEVVDLPCCLDST---------NPDAIEAGLKVHRGHAMINSTSADQ-WK- 113 (271)
T ss_dssp HTTCSEEEEECCSCSSCHHHHHHHHHHHHHHHCCCCEEEECS---------CHHHHHHHHHHCCSCCEEEEECSCH-HH-
T ss_pred HCCCCEEEEcCCcCchhHHHHHHHHHHHHHHhCCCeEEEeCC---------CHHHHHHHHHhCCCCCEEEECCCCc-cc-
Confidence 36799999997553333456777778777665 899999984 1232332223335688885 55543 11
Q ss_pred hCCCCHHHHHHHHHHcCCCccEEEEEeCCCc
Q 011562 309 TGLRNPITAGQELLRKGLRTKWVVVKMGPRG 339 (483)
Q Consensus 309 ~g~~~~~~~~~~l~~~g~~~~~vVvT~G~~G 339 (483)
..+.+....+.|+ ..|+.+++++|
T Consensus 114 -----~~~~~~~~a~~~~--~vv~m~~d~~G 137 (271)
T 2yci_X 114 -----MDIFFPMAKKYEA--AIIGLTMNEKG 137 (271)
T ss_dssp -----HHHHHHHHHHHTC--EEEEESCBTTB
T ss_pred -----cHHHHHHHHHcCC--CEEEEecCCCC
Confidence 1233333444554 55666665565
No 104
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=22.65 E-value=36 Score=28.06 Aligned_cols=39 Identities=10% Similarity=0.255 Sum_probs=31.3
Q ss_pred CCcHHHHHHHHHHcCCceEEEEEecCChhhHHHHHHHHHcCCCcc
Q 011562 128 AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMV 172 (483)
Q Consensus 128 GGg~~NvA~~larLG~~v~lig~vG~D~~g~~i~~~L~~~gId~~ 172 (483)
+|.+...+..|+..|+++.+++.+|.. ..+.|++ ||+..
T Consensus 65 ~g~g~~~~~~L~~~gv~~VI~g~iG~~-----a~~~L~~-GI~v~ 103 (136)
T 2re2_A 65 AARGVFMLKSALDHGANALVLSEIGSP-----GFNFIKN-KMDVY 103 (136)
T ss_dssp SCHHHHHHHHHHHTTCSEEEESCCBHH-----HHHHHTT-TSEEE
T ss_pred CCccHHHHHHHHHcCCCEEEECCCCHh-----HHHHHHC-CCEEE
Confidence 355668888999999999999998765 4588888 99753
No 105
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=22.28 E-value=63 Score=33.74 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCceEEEEEe-------cCChhhHHHHHHHHHcCC
Q 011562 131 NCNVAIAAARLGLDCVTIGHV-------GNEIYGRFLLDVLQDEGI 169 (483)
Q Consensus 131 ~~NvA~~larLG~~v~lig~v-------G~D~~g~~i~~~L~~~gI 169 (483)
|.-+|..|++.|.+|.++-.- |.. ........|++.|+
T Consensus 35 Gl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~-l~p~~~~~l~~lGl 79 (591)
T 3i3l_A 35 GSVAGLTLHKLGHDVTIYERSAFPRYRVGES-LLPGTMSILNRLGL 79 (591)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCSSCCCCCCB-CCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCEEEEcCCCCCCCceeee-ECHHHHHHHHHcCC
Confidence 567888888888888887432 222 22334556666666
No 106
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=22.26 E-value=4.2e+02 Score=23.78 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=21.4
Q ss_pred HHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEE
Q 011562 228 KTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIF 267 (483)
Q Consensus 228 ~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~ 267 (483)
.+.++++|+|+.. .-..+....+.+.+++.+++++
T Consensus 113 ~~~~~~~DvVi~~-----~d~~~~r~~l~~~~~~~~~p~i 147 (251)
T 1zud_1 113 KDAVARADVVLDC-----TDNMATRQEINAACVALNTPLI 147 (251)
T ss_dssp HHHHHHCSEEEEC-----CSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHhcCCEEEEC-----CCCHHHHHHHHHHHHHhCCCEE
Confidence 4456678888754 1234455566667777777654
No 107
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A*
Probab=22.25 E-value=1.8e+02 Score=28.60 Aligned_cols=40 Identities=5% Similarity=-0.010 Sum_probs=26.3
Q ss_pred HhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEE
Q 011562 229 TAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFF 268 (483)
Q Consensus 229 ~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~ 268 (483)
..+..+|+|++..-.-+.......--+++.+++.+.+++.
T Consensus 107 ~~~~~~d~vfi~ag~GGGTGtGa~pvia~~~ke~~~~~~~ 146 (389)
T 4ei7_A 107 QEFEDRDFIWITCGLGGGTGTGALLKAIEMLYEHDYNFGL 146 (389)
T ss_dssp HHTTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhcCCccEEEEEecCCCCCccccHHHHHHHHHHcCCCEEE
Confidence 3446899998874333343345556678888888877654
No 108
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=22.16 E-value=1.1e+02 Score=25.84 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=17.3
Q ss_pred CChhhHHHHHHHHHcCCCccc
Q 011562 153 NEIYGRFLLDVLQDEGIGMVG 173 (483)
Q Consensus 153 ~D~~g~~i~~~L~~~gId~~~ 173 (483)
.|.++.++.+.|++.|++...
T Consensus 29 ~Dsn~~~l~~~L~~~G~~v~~ 49 (169)
T 1y5e_A 29 TDKSGQLLHELLKEAGHKVTS 49 (169)
T ss_dssp TCHHHHHHHHHHHHHTCEEEE
T ss_pred ccChHHHHHHHHHHCCCeEeE
Confidence 477899999999999987643
No 109
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=22.02 E-value=88 Score=31.72 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=26.6
Q ss_pred CCcHH-HHHHHHHHcCCceEEEEEecCChhhHHHHHHHHHcCCCc
Q 011562 128 AGGNC-NVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGM 171 (483)
Q Consensus 128 GGg~~-NvA~~larLG~~v~lig~vG~D~~g~~i~~~L~~~gId~ 171 (483)
||.+. .+|..|.++|.+|... |..-....+.|++.||.+
T Consensus 31 G~sG~s~~A~~l~~~G~~V~~~-----D~~~~~~~~~l~~~gi~~ 70 (494)
T 4hv4_A 31 GGAGMGGIAEVLANEGYQISGS-----DLAPNSVTQHLTALGAQI 70 (494)
T ss_dssp TSTTHHHHHHHHHHTTCEEEEE-----CSSCCHHHHHHHHTTCEE
T ss_pred cHhhHHHHHHHHHhCCCeEEEE-----ECCCCHHHHHHHHCCCEE
Confidence 56666 4799999999998632 322223456788888865
No 110
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=21.87 E-value=1.1e+02 Score=21.12 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=33.6
Q ss_pred HHHHHHHhcccCCCCCCCCHHHHHHHHHhcCCCcchhhHHHHhhhcccccCcccc
Q 011562 390 NAVGAATAMGCGAGRNVATLERVIELMRASNLNEDNAFWNELLDQNVNAENITFL 444 (483)
Q Consensus 390 ~aaAa~~v~~~G~~~~~p~~~ev~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 444 (483)
...|++-+..-| ..|+.++|.+.++..+++ -+.+|-.+.-..+++..+.=|
T Consensus 3 ~~yAallL~~~g---~~~t~~~I~~il~aaGve-ve~~~~~~~~~~L~gk~i~el 53 (58)
T 3a1y_A 3 YVYAALLLHSVG---KEINEENLKAVLQAAGVE-PEEARIKALVAALEGVNIDEV 53 (58)
T ss_dssp HHHHHHHHHHTT---CCCCHHHHHHHHHHTTCC-CCHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHhCC---CCCCHHHHHHHHHHcCCC-ccHHHHHHHHHHHCCCCHHHH
Confidence 344555555545 378999999999999985 445676655554555555433
No 111
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=21.51 E-value=4.6e+02 Score=23.83 Aligned_cols=40 Identities=23% Similarity=0.131 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCceEEEEEecCChhhHHHHHHHHHcCCC
Q 011562 131 NCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIG 170 (483)
Q Consensus 131 ~~NvA~~larLG~~v~lig~vG~D~~g~~i~~~L~~~gId 170 (483)
|..+|..|++.|.+|.++..-.+....+.+.+.+++.|.+
T Consensus 62 G~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (294)
T 3r3s_A 62 GRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRK 101 (294)
T ss_dssp HHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCc
Confidence 7789999999999987655432223345556666665543
No 112
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=21.43 E-value=5.2e+02 Score=24.80 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=34.2
Q ss_pred HHhhcCCcEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEcCCCC
Q 011562 228 KTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPR 273 (483)
Q Consensus 228 ~~~l~~~~~v~isG~~~~~~~~~~~~~li~~a~~~g~~v~~D~~~~ 273 (483)
...++....|++. ..+..+...++++.|+++|+.+.+...++
T Consensus 88 ~~al~aGkhVl~E----KPl~~~ea~~l~~~A~~~g~~~~v~~~yr 129 (372)
T 4gmf_A 88 RHFLARGVHVIQE----HPLHPDDISSLQTLAQEQGCCYWINTFYP 129 (372)
T ss_dssp HHHHHTTCEEEEE----SCCCHHHHHHHHHHHHHHTCCEEEECSGG
T ss_pred HHHHHcCCcEEEe----cCCCHHHHHHHHHHHHHcCCEEEEcCccc
Confidence 3456777888888 45678889999999999999999987654
No 113
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=20.44 E-value=2.9e+02 Score=25.04 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCceEEEEEecCChhhHHHHHHHHHcCCCccce
Q 011562 131 NCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGM 174 (483)
Q Consensus 131 ~~NvA~~larLG~~v~lig~vG~D~~g~~i~~~L~~~gId~~~v 174 (483)
|.-+|..+++.|.+|.+... +.+..+...+.+++.|.+...+
T Consensus 22 G~aia~~la~~Ga~Vvi~~~--~~~~~~~~~~~l~~~g~~~~~~ 63 (255)
T 4g81_D 22 GFAYAEGLAAAGARVILNDI--RATLLAESVDTLTRKGYDAHGV 63 (255)
T ss_dssp HHHHHHHHHHTTCEEEECCS--CHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHHCCCEEEEEEC--CHHHHHHHHHHHHhcCCcEEEE
Confidence 56789999999999877643 2234455667777777655433
No 114
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=20.40 E-value=4.7e+02 Score=23.44 Aligned_cols=20 Identities=25% Similarity=0.227 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCceEEEEE
Q 011562 131 NCNVAIAAARLGLDCVTIGH 150 (483)
Q Consensus 131 ~~NvA~~larLG~~v~lig~ 150 (483)
|..+|..|++.|.+|.+++.
T Consensus 23 G~a~a~~l~~~G~~V~~~~r 42 (281)
T 3s55_A 23 GRSHAVALAEAGADIAICDR 42 (281)
T ss_dssp HHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHCCCeEEEEeC
Confidence 67889999999999887765
No 115
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=20.26 E-value=3.2e+02 Score=24.77 Aligned_cols=20 Identities=25% Similarity=0.194 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCceEEEEE
Q 011562 131 NCNVAIAAARLGLDCVTIGH 150 (483)
Q Consensus 131 ~~NvA~~larLG~~v~lig~ 150 (483)
|..++..|.+.|.+|..++.
T Consensus 17 G~~l~~~L~~~g~~V~~l~R 36 (308)
T 1qyc_A 17 GRHVAKASLDLGHPTFLLVR 36 (308)
T ss_dssp HHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHHhCCCCEEEEEC
Confidence 77888888888988876654
No 116
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=20.14 E-value=62 Score=32.01 Aligned_cols=23 Identities=9% Similarity=0.198 Sum_probs=19.1
Q ss_pred CCc--HHHHHHHHHHcCCceEEEEE
Q 011562 128 AGG--NCNVAIAAARLGLDCVTIGH 150 (483)
Q Consensus 128 GGg--~~NvA~~larLG~~v~lig~ 150 (483)
||| |.-.|..|++.|.+|.++-.
T Consensus 29 GaGpaGl~~A~~La~~G~~V~viE~ 53 (430)
T 3ihm_A 29 GAGTAGLHLGLFLRQHDVDVTVYTD 53 (430)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEcC
Confidence 455 56899999999999999964
Done!