Query 011563
Match_columns 483
No_of_seqs 96 out of 106
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 02:45:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14778 ODR4-like: Olfactory 100.0 3.9E-94 8.5E-99 744.4 37.8 343 29-405 1-358 (362)
2 KOG4703 Uncharacterized conser 100.0 3.1E-50 6.6E-55 393.5 8.3 354 22-475 4-425 (431)
3 KOG4703 Uncharacterized conser 91.9 0.12 2.6E-06 52.6 2.9 55 101-155 1-73 (431)
4 cd08057 MPN_euk_non_mb Mpr1p, 89.1 7.4 0.00016 35.9 12.0 107 24-167 22-134 (157)
5 cd08065 MPN_eIF3h Mpr1p, Pad1p 85.7 16 0.00034 37.0 12.9 131 3-167 1-134 (266)
6 PF01398 JAB: JAB1/Mov34/MPN/P 84.1 3.3 7.1E-05 35.8 6.4 90 2-118 3-93 (114)
7 cd08060 MPN_UPF0172 Mov34/MPN/ 77.2 17 0.00037 34.9 9.2 95 23-154 17-111 (182)
8 smart00232 JAB_MPN JAB/MPN dom 76.4 19 0.00042 31.3 8.8 79 12-117 9-87 (135)
9 cd08069 MPN_RPN11_CSN5 Mov34/M 71.5 97 0.0021 31.4 13.5 115 3-155 10-128 (268)
10 cd08072 MPN_archaeal Mov34/MPN 71.5 31 0.00067 30.4 8.8 21 101-121 54-74 (117)
11 cd08063 MPN_CSN6 Mpr1p, Pad1p 68.0 90 0.002 31.9 12.5 71 24-121 28-98 (288)
12 PF03665 UPF0172: Uncharacteri 66.7 70 0.0015 31.0 10.9 120 1-157 1-120 (196)
13 cd08062 MPN_RPN7_8 Mpr1p, Pad1 63.3 83 0.0018 32.2 11.2 69 24-117 25-93 (280)
14 cd08070 MPN_like Mpr1p, Pad1p 50.6 57 0.0012 28.8 6.7 68 26-121 18-85 (128)
15 PF15345 TMEM51: Transmembrane 48.0 24 0.00052 35.2 4.1 56 421-476 24-80 (233)
16 cd07767 MPN Mpr1p, Pad1p N-ter 37.4 2.2E+02 0.0047 23.9 8.1 20 100-119 57-76 (116)
17 PLN03246 26S proteasome regula 37.2 1.3E+02 0.0029 31.1 7.8 69 24-117 30-98 (303)
18 PRK01844 hypothetical protein; 34.0 52 0.0011 27.1 3.4 24 458-481 4-27 (72)
19 cd08064 MPN_eIF3f Mpr1p, Pad1p 33.0 4.9E+02 0.011 26.1 11.1 66 23-116 21-86 (265)
20 cd08066 MPN_AMSH_like Mov34/MP 29.7 4.1E+02 0.009 25.1 9.3 34 3-37 2-38 (173)
21 cd08068 MPN_BRCC36 Mov34/MPN/P 28.5 3.4E+02 0.0074 27.4 8.8 36 84-119 64-102 (244)
22 PRK00523 hypothetical protein; 26.3 85 0.0018 25.9 3.4 23 459-481 6-28 (72)
23 PF15168 TRIQK: Triple QxxK/R 25.5 83 0.0018 26.2 3.2 23 460-482 53-75 (79)
24 PF00556 LHC: Antenna complex 22.9 96 0.0021 22.4 2.8 25 456-480 10-34 (40)
25 cd08058 MPN_euk_mb Mpr1p, Pad1 20.6 4.6E+02 0.01 22.7 7.3 24 99-122 58-82 (119)
No 1
>PF14778 ODR4-like: Olfactory receptor 4-like
Probab=100.00 E-value=3.9e-94 Score=744.38 Aligned_cols=343 Identities=35% Similarity=0.594 Sum_probs=300.6
Q ss_pred EEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHhhhccCcceEE
Q 011563 29 GLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQVSRMLLGGIKV 108 (483)
Q Consensus 29 GLLIGq~s~~~~rd~Vv~li~TP~~d~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~iD~eWVaeHArQVsRMLPGGi~V 108 (483)
||||||+++ .+||||||++|||+++++++. ++ +.+ +..++++||++|||||||||+|||||||+|
T Consensus 1 GLlIGq~~s-~~kd~Vv~l~~tP~~d~~~~~-----~~-~~~--------~~~~~~~id~~WVaeHA~qVsRMLPGGi~V 65 (362)
T PF14778_consen 1 GLLIGQSSS-SQKDYVVHLARTPPEDTDDEE-----SD-VRT--------SDSSIKDIDEEWVAEHARQVSRMLPGGISV 65 (362)
T ss_pred CeEeccccC-CCcceEEEecCCCCccccccc-----cc-ccc--------ccccccccCHHHHHHHHHHHHhhCCCCcEE
Confidence 899999954 499999999999999998740 00 000 235688999999999999999999999999
Q ss_pred EEEEEEecchhhccch--HHHHHHHHHHHHhcCcccCCCCceEEEEEecCC-CeEEEEEeeecCCCCCCCCCcceeeecc
Q 011563 109 VGIYVWATDSAFKNST--IELCQTVNAAAKAVPILEIDSDERLLVHIGYSP-RRYTCRNCTITSNITSSCLRPCDLKTGL 185 (483)
Q Consensus 109 lGifv~~~~~~~~~~~--~~L~qll~~v~~a~~l~~~~~~e~l~Lhi~~st-kk~~Ck~~dv~~~~~~ss~kPaDwK~q~ 185 (483)
|||||+++++.|++++ +.|+++++....+...++.+++|+++||||++| ||++||+|++.++ ++++||||||||+
T Consensus 66 lGifvv~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~l~i~~st~kk~~Ck~~~~~~~--~~~~kpad~K~~~ 143 (362)
T PF14778_consen 66 LGIFVVAPDDAFKDSSTLNKLKKLLFSSNSLWSVYNDDVSERLLLHICSSTSKKLTCKSYDVADP--KSSLKPADWKFQN 143 (362)
T ss_pred EEEEEEcCHHHhccchHHHHHHHHHhhhcccccccCCCcccceEEEEEcccCceEEEEEEEecCC--CCCCCCccEEecc
Confidence 9999999999999876 667777773122336678899999999999999 9999999999976 9999999999999
Q ss_pred cccceeEEEEEeeeceeeeeeecCCCCcchHHHHHHHHHHHHHHhhhcceEEEcCeeccCCCCCC---------CCCceE
Q 011563 186 VLKTLRTFKCTYNFSLRLPIRLVGASNTQTFSDILRQGISVHANELRGAKAVVDGNFVVNDEPCS---------TDGLHE 256 (483)
Q Consensus 186 ~~~sw~~l~c~~~~d~~lPl~~~~~~~~~~l~~~l~~~l~~~~~~l~~s~~lidG~~~~~d~~l~---------~~g~~~ 256 (483)
+.++|++|+|+|+||+++|+.+. ....+++++||+++|+.|+++|++|++||||++++++++|. .+++|+
T Consensus 144 ~~~~w~~l~c~~~~d~~~pl~~~-~~~~~~~~~~l~~~l~~~~~~l~~s~~lidG~~~~~~~~l~~~~~~~~~~~~~~~~ 222 (362)
T PF14778_consen 144 KPTSWIQLECSYDFDLVIPLSDG-KSSKETLEKQLKNILEPWAKQLESSVVLIDGEVRDDDEDLESSSKSSKNSSDSIFD 222 (362)
T ss_pred ccceEEEEEEEEEEeeeeeccCC-ccchHHHHHHHHHHHHHHHHHhhccEEEECCEEcCCcchhhcccCCcccCCCCcEE
Confidence 99999999999999999999932 22357999999999999999999999999999999999984 245789
Q ss_pred EEEeeccCCCCCccccccccceeeEEEEeEEEEEEEeCCCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccccCCCCCCCC
Q 011563 257 VELLLPLLNDTSAEACSQKDVVGLLILSGSVCSFAFLTPKEPISQAFSEIKGDIIMSLQSRLDVICDEVDEDLAPTAGGG 336 (483)
Q Consensus 257 v~ll~p~~~~~~~~~~~~~~~~G~l~~~G~v~~rAyv~~k~~v~eAi~aIK~DIirSL~sR~ei~~d~l~~~~~~~~~~~ 336 (483)
|++|+|+.++..+++++++.|+|+++|+|.|+||||+|+|++|++|++|||+||||||++|+|||||+|++++++.....
T Consensus 223 v~ll~p~~~~~~~~~~~~~~~~g~i~~~G~v~~rAyv~~K~sv~eA~~alK~DIirSL~sR~ei~~d~l~~~~~~~~~~~ 302 (362)
T PF14778_consen 223 VDLLLPFQNSNPRSTIKVQSCSGSIRFSGSVSCRAYVHSKESVAEAIQALKRDIIRSLSSRLEILCDDLEDDEEEESDSS 302 (362)
T ss_pred EEEEecccCCCCcccceeeecceEEEEEEEEEEEEEECCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 99999998888888899999999999999999999999999999999999999999999999999999998876433211
Q ss_pred CCcCCCCCchhhhhhhcccccCCCCCceEEeecCC--ceeeeeecCCCCCHHHHHHHHHHHhCCCCCCC-Cc
Q 011563 337 EEASNEKPVSKLILHSLRKTCGLSFPRRVFVPWLA--DTYICDYLQPSETLEVLKEHCVELMSMEALSD-SS 405 (483)
Q Consensus 337 ~~~~~~~p~~~~~~~~~~~~~~~~lPRRV~vp~~~--~v~~cDYLF~~E~~~d~~~~~~ElLdl~~~~e-~~ 405 (483)
+ ... +.|+|||||||||++ +++||||||+||+++|+++||+||||++++++ ++
T Consensus 303 ~--------~~~--------~~~~lPrRv~~p~~~~~~v~~cDYlF~~E~~~d~~~~~~ElLd~~~~~~~i~ 358 (362)
T PF14778_consen 303 E--------EEI--------EVHELPRRVFVPWPSSPSVQFCDYLFPDETAEDAVERFKELLDLEVPEEDIE 358 (362)
T ss_pred c--------ccc--------ccccCCceEEEecCCCCceEEEEecCCCCCHHHHHHHHHHHHCCCCCHHHhh
Confidence 0 111 368999999999997 79999999999999999999999999999976 55
No 2
>KOG4703 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.1e-50 Score=393.48 Aligned_cols=354 Identities=21% Similarity=0.284 Sum_probs=274.2
Q ss_pred cCCcceEEEEeeecCCCCCccEEEEec-CCCCCc--ccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHh
Q 011563 22 SGLSAQVGLLIGKLSPTLDRGFIFDFI-PTPQND--AGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQV 98 (483)
Q Consensus 22 ~~~~~~~GLLIGq~s~~~~rd~Vv~li-~TP~~d--~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~iD~eWVaeHArQV 98 (483)
.|.+....+|||.... ..||.++++ +.|--- -++.+ ..++..+..+|+.+||...
T Consensus 4 ~Gi~a~a~Fiigsfc~--~gD~h~A~askcpvh~salee~A--------------------tEkS~mledeWm~d~aErl 61 (431)
T KOG4703|consen 4 GGILALAVFIIGSFCL--AGDFHNALASKCPVHRSALEEFA--------------------TEKSIMLEDEWMFDEAERL 61 (431)
T ss_pred CcceEEEEEeeeehhh--cccHHHHHhhcCcchhHHHHHhh--------------------hhhhHhHHHhhcccHHHHH
Confidence 3667777899999987 889999988 333322 22222 1224567789999999999
Q ss_pred hhccCcceEEEEEEEEecchhhccchHHHHHHHHHHHHhcCcccCCCCceEEEEEecCCCeEEEEEeeecCCCCCCCCCc
Q 011563 99 SRMLLGGIKVVGIYVWATDSAFKNSTIELCQTVNAAAKAVPILEIDSDERLLVHIGYSPRRYTCRNCTITSNITSSCLRP 178 (483)
Q Consensus 99 sRMLPGGi~VlGifv~~~~~~~~~~~~~L~qll~~v~~a~~l~~~~~~e~l~Lhi~~stkk~~Ck~~dv~~~~~~ss~kP 178 (483)
.||||||++|+||.|.+ +||+.||++++.++ |+..||
T Consensus 62 ~RmlpggiHi~giaw~S-----------------------------------------dKK~F~rdr~~H~h--Ksl~Ri 98 (431)
T KOG4703|consen 62 ERMLPGGIHICGIAWAS-----------------------------------------DKKIFCRDRDIHDH--KSLARI 98 (431)
T ss_pred HhhccCceEEEeeeccc-----------------------------------------ccceeeccccccCc--hhhcch
Confidence 99999999999999863 57789999999877 999999
Q ss_pred ceeeec-ccccceeEE-EEEeeeceeeeeeecC-CCCcchHHHHHHHHHHH-----HHHhhhcc-------eEEEcCeec
Q 011563 179 CDLKTG-LVLKTLRTF-KCTYNFSLRLPIRLVG-ASNTQTFSDILRQGISV-----HANELRGA-------KAVVDGNFV 243 (483)
Q Consensus 179 aDwK~q-~~~~sw~~l-~c~~~~d~~lPl~~~~-~~~~~~l~~~l~~~l~~-----~~~~l~~s-------~~lidG~~~ 243 (483)
+|||+| +..++|..+ .|++.+...+|+.... +.-..|++++-+++... |++.++++ +.++||++.
T Consensus 99 a~mknQi~~an~ddSisd~mi~iffe~P~sapigaiidvT~~gNdka~k~qfqkleW~k~i~NasarivhnVpldnGqpk 178 (431)
T KOG4703|consen 99 ADMKNQIGLANSDDSISDCMIHIFFEIPLSAPIGAIIDVTLEGNDKAGKTQFQKLEWAKEIENASARIVHNVPLDNGQPK 178 (431)
T ss_pred HhhhccccccccccchhhcEEEEEEecCCCCcccceEEEEeccCccccchhhhHHHHHHHhhcccceeeeeeeccCCCcC
Confidence 999999 789999999 9999999999998642 33346888888888887 99999999 899999999
Q ss_pred cCCCCCC------CCCc------------------------------eEEEEeeccCCCCCccc-cccccceeeEEEEeE
Q 011563 244 VNDEPCS------TDGL------------------------------HEVELLLPLLNDTSAEA-CSQKDVVGLLILSGS 286 (483)
Q Consensus 244 ~~d~~l~------~~g~------------------------------~~v~ll~p~~~~~~~~~-~~~~~~~G~l~~~G~ 286 (483)
+.+++|- ..|. +..++++.++-..+++. +..+.|+|...+.|.
T Consensus 179 D~~~DLl~aqKkf~n~lfQ~ef~l~DgeiRddkeplikdikknkkttieaQLfLNplflD~RelgAiddIaS~mhel~f~ 258 (431)
T KOG4703|consen 179 DEDCDLLEAQKKFSNGLFQAEFHLFDGEIRDDKEPLIKDIKKNKKTTIEAQLFLNPLFLDHRELGAIDDIASGMHELKFA 258 (431)
T ss_pred ccchhHHHHHHhhcCCceeEEEeeccchhccccchhhhhhhhcccceehHhhhhCchhccchhhhhHHHHhccchhhhee
Confidence 9988761 1121 22333332222455544 556889999999999
Q ss_pred EEEEEEeCCCCC-HHHHHHHHHHHHHHhHHHHHHHHhhhccccCCCCCCCCCCcCCCCCchhhhhhhcccccCCCCCc-e
Q 011563 287 VCSFAFLTPKEP-ISQAFSEIKGDIIMSLQSRLDVICDEVDEDLAPTAGGGEEASNEKPVSKLILHSLRKTCGLSFPR-R 364 (483)
Q Consensus 287 v~~rAyv~~k~~-v~eAi~aIK~DIirSL~sR~ei~~d~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lPR-R 364 (483)
|.||||+|+-+| |++|+||||+||+|+|.+|||||+|+|..++++ ++|++.+.+ |.||| |
T Consensus 259 ie~RAai~sik~kVKDAiqAiKh~il~nl~aR~ElhfE~lel~Eee----------~k~~s~i~~--------HqLPrpa 320 (431)
T KOG4703|consen 259 IECRAAIHSIKPKVKDAIQAIKHDILNNLAARCELHFEDLELNEEE----------EKKDSEIEF--------HQLPRPA 320 (431)
T ss_pred eeeeeecccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc----------cCCCcCceE--------EecCCcc
Confidence 999999997666 999999999999999999999999999877653 456677755 59999 9
Q ss_pred EEeecCCc-eeeeeecCCCCCHHHHHHHHHHHhCCCCCCC-Cccccc-----ccccCCccccccccccccCCCCCCCCCC
Q 011563 365 VFVPWLAD-TYICDYLQPSETLEVLKEHCVELMSMEALSD-SSSILD-----VEVEAPSVISKSFWDVVVPFSSGGSSSS 437 (483)
Q Consensus 365 V~vp~~~~-v~~cDYLF~~E~~~d~~~~~~ElLdl~~~~e-~~~i~e-----~E~~~~~~~~~s~~d~~~~~~~~~~~~~ 437 (483)
+|+|.+++ +.+|||+|.+|+++|++++|.||||+.+++| .++-+| .|++++..+++++-.+--.
T Consensus 321 t~Vl~~~paili~Df~FdadnaEdaq~~FddMlD~q~qIE~lde~~Eralnp~~Mea~~npi~dL~f~D~d--------- 391 (431)
T KOG4703|consen 321 TFVLLPGPAILICDFKFDADNAEDAQDHFDDMLDHQIQIEDLDEAEERALNPACMEASMNPIADLDFTDDD--------- 391 (431)
T ss_pred eEEecCCCeEEEeecccCcccHHHHHHHHHHHhhhhcchhhhhHHHHhcCCHHHHhhhcCchhhccccCCC---------
Confidence 99999975 9999999999999999999999999999987 665554 4577777666655433100
Q ss_pred CCCccccCCcccCcCCCc----cchHHHHHHHHHHHHHHHHH
Q 011563 438 SASKGIETSKEKTEYPVK----TANFNIMAAVFFLLLSILVG 475 (483)
Q Consensus 438 ~~~~~~~~~~~~s~~~~~----~~~~~~~~a~~~ll~~i~~~ 475 (483)
.+..+-++++ ..+|+|++|++|-|++-.+.
T Consensus 392 --------g~kd~~cTTkllkiqqnI~i~~A~ii~lLAa~I~ 425 (431)
T KOG4703|consen 392 --------GPKDPICTTKLLKIQQNIGIIAAFIIALLAAGIS 425 (431)
T ss_pred --------CCCCchhhhhHHhhhhhhhHHHHHHHHHHhhheE
Confidence 0112222221 23899999999887765443
No 3
>KOG4703 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.92 E-value=0.12 Score=52.59 Aligned_cols=55 Identities=24% Similarity=0.295 Sum_probs=41.0
Q ss_pred ccCcceEEEEEEEEecchhhccchHHHH------H---HHHHHHHhc------CcccCCCCceEE---EEEec
Q 011563 101 MLLGGIKVVGIYVWATDSAFKNSTIELC------Q---TVNAAAKAV------PILEIDSDERLL---VHIGY 155 (483)
Q Consensus 101 MLPGGi~VlGifv~~~~~~~~~~~~~L~------q---ll~~v~~a~------~l~~~~~~e~l~---Lhi~~ 155 (483)
|||||+-++|+|++++--...+-.+.|+ + ..+++++++ ...+.+..+|++ +|||-
T Consensus 1 l~d~Gi~a~a~Fiigsfc~~gD~h~A~askcpvh~salee~AtEkS~mledeWm~d~aErl~RmlpggiHi~g 73 (431)
T KOG4703|consen 1 LLDGGILALAVFIIGSFCLAGDFHNALASKCPVHRSALEEFATEKSIMLEDEWMFDEAERLERMLPGGIHICG 73 (431)
T ss_pred CCCCcceEEEEEeeeehhhcccHHHHHhhcCcchhHHHHHhhhhhhHhHHHhhcccHHHHHHhhccCceEEEe
Confidence 8999999999999998755555555554 3 556777776 345567788888 99983
No 4
>cd08057 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic. This family contains MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains variants lacking key residues in the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif and are unable to coordinate a metal ion. Comparisons of key catalytic and metal binding residues explain why the MPN-containing proteins Rpn7/PSMD7, Rpn8/PSMD8, CSN6, Prp8p, and the translation initiation factor 3 subunits f and h do not show catalytic isopeptidase activity. It has been proposed that the MPN domain in these proteins has a primarily structural function. Rpn7 is known to be critical for the integrity of the 26S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. CSN6 is a highly conserved protein complex with diverse functions, including several import
Probab=89.12 E-value=7.4 Score=35.90 Aligned_cols=107 Identities=16% Similarity=0.299 Sum_probs=69.1
Q ss_pred CcceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHhhhccC
Q 011563 24 LSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQVSRMLL 103 (483)
Q Consensus 24 ~~~~~GLLIGq~s~~~~rd~Vv~li~TP~~d~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~iD~eWVaeHArQVsRMLP 103 (483)
...++|+|+|.... +.=-|.+-.+.|.+.+++ ...+|.+|..+=-++-.+.-|
T Consensus 22 ~~~v~G~LlG~~~~--~~veV~nsF~lp~~~~~~-------------------------~~~~d~~y~~~m~~~~~~v~~ 74 (157)
T cd08057 22 IKRVIGVLLGYVDG--DKIEVTNSFELPFDEEEE-------------------------SIFIDTEYLEKRYNLHKKVYP 74 (157)
T ss_pred CCeEEEEEEeEEeC--CEEEEEEeEEccccCCCc-------------------------chhhhHHHHHHHHHHHHHhCC
Confidence 46799999999975 555566777888855432 024788998888888888878
Q ss_pred cceEEEEEEEEecchh--hccchHHHHHHHHHHHHhcCcccCCCCceEEEEEec----CCCeEEEEEeee
Q 011563 104 GGIKVVGIYVWATDSA--FKNSTIELCQTVNAAAKAVPILEIDSDERLLVHIGY----SPRRYTCRNCTI 167 (483)
Q Consensus 104 GGi~VlGifv~~~~~~--~~~~~~~L~qll~~v~~a~~l~~~~~~e~l~Lhi~~----stkk~~Ck~~dv 167 (483)
...|||-|.+++... .......+.+.+... ....-+.|-+++ ++++..-+.|-.
T Consensus 75 -~~~vVGWY~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~v~L~~D~~~~~~~~~l~i~ay~~ 134 (157)
T cd08057 75 -QEKIVGWYSIGSNNSNEISKSDNSLHSQFSLI---------SEENPLILILDPSLQSDSEKLEISTFTS 134 (157)
T ss_pred -CCCEEEEEeecCCCCCCCChhHHHHHHHHHhc---------cCCCCEEEEEcCCcccCCCcccEEEEEE
Confidence 789999999998853 222223333333331 113346777765 235555555443
No 5
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h. Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different
Probab=85.67 E-value=16 Score=37.00 Aligned_cols=131 Identities=14% Similarity=0.110 Sum_probs=75.7
Q ss_pred cEEEecChhhHHHHHHHhhcCCcceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcc
Q 011563 3 NTVVVEKPQLLSAEDRLSQSGLSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSI 82 (483)
Q Consensus 3 Rtvi~ee~~v~~y~~~L~~~~~~~~~GLLIGq~s~~~~rd~Vv~li~TP~~d~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 82 (483)
++|.++...+-+-++-+.+....-++|+|+|...+ +.=-|....|.|..++++.. .
T Consensus 1 ~~V~I~~~vllkIv~H~~~~~p~~v~G~LLG~~~~--~~leVtn~Fp~P~~~~~~~~----------------------~ 56 (266)
T cd08065 1 TSVQIDGLVVLKIIKHCKEELPELVQGQLLGLDVG--GTLEVTNCFPFPKSEEDDSD----------------------R 56 (266)
T ss_pred CEEEEeHHHHHHHHHHHhcCCCcEEEEEEeeeEcC--CEEEEEeccCCCCCCCCCcc----------------------h
Confidence 46777766555555555554456789999999975 55566688899987775411 0
Q ss_pred cccCCHHHHHHHHHHhhhccCcceEEEEEEEEecchhhccchHHHHHHHHHHHHhcCcccCCCCceEEEEEecC---CCe
Q 011563 83 SLVIDKDWIAEHARQVSRMLLGGIKVVGIYVWATDSAFKNSTIELCQTVNAAAKAVPILEIDSDERLLVHIGYS---PRR 159 (483)
Q Consensus 83 ~~~iD~eWVaeHArQVsRMLPGGi~VlGifv~~~~~~~~~~~~~L~qll~~v~~a~~l~~~~~~e~l~Lhi~~s---tkk 159 (483)
...+|.++-.+.-+..-+.=| .-.|||.|-.+|-..|.++ .+....++- .....+.+.|-+++. +.+
T Consensus 57 ~~~~~~~yq~~m~~~~r~v~~-~e~iVGWY~S~p~~~~~~~--s~id~~~~~-------q~~~~~~v~Li~D~~~s~~g~ 126 (266)
T cd08065 57 ADEDIADYQLEMMRLLREVNV-DHNHVGWYQSTYLGSFFTR--DLIETQYNY-------QEAIEESVVLVYDPSKTSQGS 126 (266)
T ss_pred hhhhHHHHHHHHHHHHHHhCC-CCcEEEeEeecCCCCcCCH--HHHHHHHHH-------hccCCCCEEEEECCCcccccc
Confidence 112333333333222222211 3399999999995555442 233444442 223345677777774 455
Q ss_pred EEEEEeee
Q 011563 160 YTCRNCTI 167 (483)
Q Consensus 160 ~~Ck~~dv 167 (483)
...|.|-.
T Consensus 127 l~lkAyrl 134 (266)
T cd08065 127 LSLKAYRL 134 (266)
T ss_pred eeeEEEEE
Confidence 66666643
No 6
>PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. This family is also known as the MPN domain [] and PAD-1-like domain []. It has been shown that this domain occurs in prokaryotes []. Mov34 proteins act as the regulatory subunit of the 26 proteasome, which is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of this domain is unclear, but it is found in the N terminus of the proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. A number of the proteins associated with this family belong to MEROPS peptidase family M67 (clan M-). This includes the Poh1 peptidase of Saccharomyces cerevisiae (Baker's yeast) which is a component of the 19S proteasome regulatory particle.; GO: 0005515 protein binding; PDB: 2ZNV_D 2ZNR_A 4E0Q_A 2P87_A 2P8R_A 2O96_B 2O95_A 3RZU_F 3RZV_A.
Probab=84.11 E-value=3.3 Score=35.76 Aligned_cols=90 Identities=22% Similarity=0.329 Sum_probs=54.6
Q ss_pred ccEEEecChhhHHHHHHHhhcCCcceEEEEeeecCCCCC-ccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCC
Q 011563 2 VNTVVVEKPQLLSAEDRLSQSGLSAQVGLLIGKLSPTLD-RGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSD 80 (483)
Q Consensus 2 gRtvi~ee~~v~~y~~~L~~~~~~~~~GLLIGq~s~~~~-rd~Vv~li~TP~~d~~~~~~~~~~~~~~~~~~k~~~~~~~ 80 (483)
+++|.++...+-+..+-.......-++|+|+|.... . .=-|....+.|....++.
T Consensus 3 ~~~V~i~p~vll~i~~h~~r~~~~~v~G~LlG~~~~--~~~v~I~~~f~~p~~~~~~~---------------------- 58 (114)
T PF01398_consen 3 VQTVQIHPLVLLKIIDHATRSSPNEVIGLLLGTQDG--DNTVEITNSFPVPHSESEDD---------------------- 58 (114)
T ss_dssp CEEEEEEHHHHHHHHHHHHHHHCTEEEEEEEEEEET--T-EEEEEEEEEESEEEESSE----------------------
T ss_pred cEEEEECHHHHHHHHHHHhcCCCCEEEEEEEEEecC--ceEEEEEEEEEeeEecCccc----------------------
Confidence 456666666444444443332333689999999977 5 334555667777766542
Q ss_pred cccccCCHHHHHHHHHHhhhccCcceEEEEEEEEecch
Q 011563 81 SISLVIDKDWIAEHARQVSRMLLGGIKVVGIYVWATDS 118 (483)
Q Consensus 81 ~~~~~iD~eWVaeHArQVsRMLPGGi~VlGifv~~~~~ 118 (483)
....+.++. .....-.+++-+-..+||-|-.+|.-
T Consensus 59 --~~~~~~~~~-~~~~~~~~~~~~~~~iVGWY~s~p~~ 93 (114)
T PF01398_consen 59 --CDMDDEDFQ-KKMIELLKKVNPNLEIVGWYHSHPNI 93 (114)
T ss_dssp --EEEECCHHH-HHHHHHHHHCSTTSEEEEEEEEESSS
T ss_pred --cccchhhHH-HHHHhhhccccccceEEEEEEccCCc
Confidence 122444555 33434444443449999999999875
No 7
>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p). This family includes Noc4p (neighbor of COX4; neighbor of Cytochrome c Oxidase 4; nucleolar complex associated 4 homolog) which belongs to the family of unknown function, UPF0172, with MPN/JAMM-like domains. Proteins in this family are homologs of the NOC4 gene which is conserved in eukaryotic members including human, dog, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.pombe, K.lactis, E.gossypii, M.grisea, N.crassa, A.thaliana, and rice. NOC4 highly expressed in the pancreas and moderately in liver, heart, lung, kidney, brain, skeletal muscle, and placenta. This nucleolar protein forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits. This family of eukaryotic MPN-like domains lacks the key residues that coordinate a metal ion and therefore does not show catalytic isopeptidase activity.
Probab=77.19 E-value=17 Score=34.86 Aligned_cols=95 Identities=18% Similarity=0.136 Sum_probs=56.0
Q ss_pred CCcceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHhhhcc
Q 011563 23 GLSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQVSRML 102 (483)
Q Consensus 23 ~~~~~~GLLIGq~s~~~~rd~Vv~li~TP~~d~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~iD~eWVaeHArQVsRML 102 (483)
....+.|||+|+... .+.-.|+..+|.+..--. . .....|...-|-.||++-
T Consensus 17 p~~evcGlLlG~~~~-~~~~~V~d~vPl~h~~~~-------l----------------~P~~Eval~~ve~~~~~~---- 68 (182)
T cd08060 17 PHCAVNGLLLGKKSS-GGSVEITDAVPLFHSCLA-------L----------------APMLEVALALVDAYCKSS---- 68 (182)
T ss_pred CCchheEEEEeeecC-CCCEEEEEEEEcCCCccc-------c----------------CHHHHHHHHHHHHHHHHC----
Confidence 334689999999863 255678899888763110 0 012334456677788773
Q ss_pred CcceEEEEEEEEecchhhccchHHHHHHHHHHHHhcCcccCCCCceEEEEEe
Q 011563 103 LGGIKVVGIYVWATDSAFKNSTIELCQTVNAAAKAVPILEIDSDERLLVHIG 154 (483)
Q Consensus 103 PGGi~VlGifv~~~~~~~~~~~~~L~qll~~v~~a~~l~~~~~~e~l~Lhi~ 154 (483)
|+.|+|+|-..|.-.=..+...-.++..+|.+. .+.-+++.|+
T Consensus 69 --gl~IvG~Yhsh~~~~d~~~~~~a~kIadki~~~-------~~~a~ll~vd 111 (182)
T cd08060 69 --GLVIVGYYQANERLDDSSPSPVAKKIADKIAEN-------FSNACLLMVD 111 (182)
T ss_pred --CCEEEEEEecCCcccCCCCcHHHHHHHHHHHHh-------CCCCEEEEEe
Confidence 999999999877643222223233444444332 2355555555
No 8
>smart00232 JAB_MPN JAB/MPN domain. Domain in Jun kinase activation domain binding protein and proteasomal subunits. Domain at Mpr1p and Pad1p N-termini. Domain of unknown function.
Probab=76.43 E-value=19 Score=31.28 Aligned_cols=79 Identities=19% Similarity=0.297 Sum_probs=49.4
Q ss_pred hHHHHHHHhhcCCcceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHH
Q 011563 12 LLSAEDRLSQSGLSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWI 91 (483)
Q Consensus 12 v~~y~~~L~~~~~~~~~GLLIGq~s~~~~rd~Vv~li~TP~~d~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~iD~eWV 91 (483)
+.+-++........-.+|+|+|+... ++-.|....+.|....... ...++.++.
T Consensus 9 ~~~i~~h~~~~~p~e~~G~L~G~~~~--~~~~i~~~~~~p~~~~~~~------------------------~~~~~~~~~ 62 (135)
T smart00232 9 PLNILKHAIRDGPEEVCGVLLGKSNK--DRPEVKEVFAVPNEPQDDS------------------------VQEYDEDYS 62 (135)
T ss_pred HHHHHHHHhcCCCcEEEEEEEEEEcC--CEEEEEEEEecCcCCCCcc------------------------hhhhhhhHH
Confidence 44444444443445689999999865 5555666677765332210 113556666
Q ss_pred HHHHHHhhhccCcceEEEEEEEEecc
Q 011563 92 AEHARQVSRMLLGGIKVVGIYVWATD 117 (483)
Q Consensus 92 aeHArQVsRMLPGGi~VlGifv~~~~ 117 (483)
.+...+.. -..-|..+||.|-..|.
T Consensus 63 ~~~~~~~~-~~~~~~~~vGwyhshp~ 87 (135)
T smart00232 63 HLMDEELK-KVNKDLEIVGWYHSHPD 87 (135)
T ss_pred HHHHHHHH-hhCCCceEEEEEEcCCC
Confidence 66655543 36678899999999986
No 9
>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5. This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations i
Probab=71.51 E-value=97 Score=31.44 Aligned_cols=115 Identities=16% Similarity=0.180 Sum_probs=66.7
Q ss_pred cEEEecChhhHHHHHHHhhcCCcceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcc
Q 011563 3 NTVVVEKPQLLSAEDRLSQSGLSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSI 82 (483)
Q Consensus 3 Rtvi~ee~~v~~y~~~L~~~~~~~~~GLLIGq~s~~~~rd~Vv~li~TP~~d~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 82 (483)
++|.++...+.+-+.-.......-++|+|+|.... +.-.|....|.|....+...
T Consensus 10 ~~V~Is~~allkil~Ha~~~~p~Ev~GlLlG~~~~--~~v~Vt~~fp~p~~~t~~~v----------------------- 64 (268)
T cd08069 10 EKVYISSLALLKMLKHARAGGPIEVMGLMLGKVDD--YTIIVVDVFALPVEGTETRV----------------------- 64 (268)
T ss_pred cEEEECHHHHHHHHHHHhccCCceEEEEEEeeecC--CeEEEEEEEECCcCCCCCce-----------------------
Confidence 56666666566666555443445689999999654 55567788899865443211
Q ss_pred cccCCH---HHHHHHHHHhhhccCcceEEEEEEEEecc-hhhccchHHHHHHHHHHHHhcCcccCCCCceEEEEEec
Q 011563 83 SLVIDK---DWIAEHARQVSRMLLGGIKVVGIYVWATD-SAFKNSTIELCQTVNAAAKAVPILEIDSDERLLVHIGY 155 (483)
Q Consensus 83 ~~~iD~---eWVaeHArQVsRMLPGGi~VlGifv~~~~-~~~~~~~~~L~qll~~v~~a~~l~~~~~~e~l~Lhi~~ 155 (483)
..+. +-+.++ +..|+.-=|..|||.|=.+|. ..+-.......|..+.- ...+.|.|-|++
T Consensus 65 --~~~~e~~~~m~~~--~~~~~~~~~~~vVGWYHSHP~~g~~~S~~Dv~tq~~yq~---------~~~~~V~lViDP 128 (268)
T cd08069 65 --NAQDEFQEYMVQY--EMLKQTGRPENVVGWYHSHPGYGCWLSGIDVNTQQLNQQ---------LQDPFVAVVVDP 128 (268)
T ss_pred --eccHHHHHHHHHH--HHHHHhCCCceeEeeeccCCCcCCcCCHHHHHHHHHHHh---------cCCCcEEEEEeC
Confidence 1121 333331 233344446899999999994 44444444444443331 124467777775
No 10
>cd08072 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1/MPN/Mov34 metalloenzyme. This family contains only archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=71.50 E-value=31 Score=30.45 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=17.7
Q ss_pred ccCcceEEEEEEEEecchhhc
Q 011563 101 MLLGGIKVVGIYVWATDSAFK 121 (483)
Q Consensus 101 MLPGGi~VlGifv~~~~~~~~ 121 (483)
|++-|+.++|+|-..|.....
T Consensus 54 ~~~~g~~ivgi~HSHP~~~~~ 74 (117)
T cd08072 54 MLPLDMSIVGSVHSHPSGSPR 74 (117)
T ss_pred HhcCCCeEEEEEEcCCCCCCC
Confidence 678899999999999986444
No 11
>cd08063 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6. CSN6 (COP9 signalosome subunit 6; COP9 subunit 6; MOV34 homolog, 34 kD) is one of the eight subunits of COP9 signalosome, a highly conserved protein complex with diverse functions, including several important intracellular pathways such as the ubiquitin/proteasome system, DNA repair, cell cycle, developmental changes, and some aspects of immune responses. CSN6 is an MPN-domain protein that directly interacts with the MPN+-domain subunit CSN5. It is cleaved during apoptosis by activated caspases. CSN6 processing occurs in CSN/CRL (cullin-RING Ub ligase) complexes and is followed by the cleavage of Rbx1, the direct interaction partner of CSN6. CSN6 cleavage enhances CSN-mediated deneddylating activity (i.e. cleavage of ubiquitin-like protein Nedd8 (neural precursor cell expressed, developmentally downregulated 8)) in the cullin 1 in cells. The cleav
Probab=67.99 E-value=90 Score=31.85 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=51.2
Q ss_pred CcceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHhhhccC
Q 011563 24 LSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQVSRMLL 103 (483)
Q Consensus 24 ~~~~~GLLIGq~s~~~~rd~Vv~li~TP~~d~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~iD~eWVaeHArQVsRMLP 103 (483)
...++|.|+|.... ..=-|..-.+.|..+++. + ...+|.+|..+=-.|--+.-|
T Consensus 28 ~~~v~G~LLG~~~~--~~veItnsF~~p~~~~~~-~-----------------------~~~id~~y~~~m~~~~kkV~~ 81 (288)
T cd08063 28 PPRVVGALLGQQDG--REIEIENSFELKYDTNED-G-----------------------EIVLDKEFLETRLEQFKQVFK 81 (288)
T ss_pred CCcEEEEEEEEEcC--CEEEEEEEEecccccCCC-C-----------------------ceeeCHHHHHHHHHHHHHhcc
Confidence 46799999998754 433344556888765541 0 135889998888888888888
Q ss_pred cceEEEEEEEEecchhhc
Q 011563 104 GGIKVVGIYVWATDSAFK 121 (483)
Q Consensus 104 GGi~VlGifv~~~~~~~~ 121 (483)
. ..|||-|..++...+.
T Consensus 82 ~-~~vVGWY~tg~~~~~~ 98 (288)
T cd08063 82 D-LDFVGWYTTGPGGPTE 98 (288)
T ss_pred C-CceEEEEecCCCCCCH
Confidence 7 8999999999884333
No 12
>PF03665 UPF0172: Uncharacterised protein family (UPF0172); InterPro: IPR005366 This is a small family of proteins of unknown function.
Probab=66.70 E-value=70 Score=31.02 Aligned_cols=120 Identities=17% Similarity=0.114 Sum_probs=65.4
Q ss_pred CccEEEecChhhHHHHHHHhhcCCcceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCC
Q 011563 1 MVNTVVVEKPQLLSAEDRLSQSGLSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSD 80 (483)
Q Consensus 1 MgRtvi~ee~~v~~y~~~L~~~~~~~~~GLLIGq~s~~~~rd~Vv~li~TP~~d~~~~~~~~~~~~~~~~~~k~~~~~~~ 80 (483)
|..-.+-..++++-.+=.+ +.....+.|+|||+.+...++=.|+..+|-=..... .
T Consensus 1 m~~v~is~~AY~K~~LHaa-KyP~~aVnGvLlg~~~~~~~~v~i~DaVPLfH~~~~-----------------------L 56 (196)
T PF03665_consen 1 MSSVEISSRAYAKMILHAA-KYPHCAVNGVLLGKSSKSSSEVEIVDAVPLFHHWLS-----------------------L 56 (196)
T ss_pred CceEEEcHHHHHHHHHHhc-cCCCCceeeEEEeccCCCCceEEEeeceeccccccC-----------------------c
Confidence 4444455555333333333 336678999999998763223567777774331111 1
Q ss_pred cccccCCHHHHHHHHHHhhhccCcceEEEEEEEEecchhhccchHHHHHHHHHHHHhcCcccCCCCceEEEEEecCC
Q 011563 81 SISLVIDKDWIAEHARQVSRMLLGGIKVVGIYVWATDSAFKNSTIELCQTVNAAAKAVPILEIDSDERLLVHIGYSP 157 (483)
Q Consensus 81 ~~~~~iD~eWVaeHArQVsRMLPGGi~VlGifv~~~~~~~~~~~~~L~qll~~v~~a~~l~~~~~~e~l~Lhi~~st 157 (483)
.....+--.-|-.||++ .|+.|+|.|--...-.=..+...-.++-.+|.+ ..++-+++.|+-..
T Consensus 57 ~PmlEvAL~qvd~~~~~------~gl~IvGyY~Ane~~~d~~~~~~a~kiad~I~~-------~~~~a~ll~idn~k 120 (196)
T PF03665_consen 57 SPMLEVALAQVDAYAKS------NGLVIVGYYQANERLDDNSPSPVAEKIADKIAE-------NFSDACLLMIDNKK 120 (196)
T ss_pred chHHHHHHHHHHHHHhh------CCCEEEEEEEeccccccCCCCHHHHHHHHHHHh-------hCCCcEEEEEECcc
Confidence 11334555667788875 689999999875421001111222334444432 34566777776433
No 13
>cd08062 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8. This family includes lid subunits of the 26 S proteasome regulatory particles, Rpn7 (PSMD7; proteasome 26S non-ATPase subunit 7; p44), and Rpn8 (PSMD8; proteasome 26S non-ATPase subunit 8; p40; Mov34). Rpn7 is known to be critical for the integrity of the 26 S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. Rpn7 and Rpn8 are ATP-independent components of the 19S regulator subunit, and contain the MPN structural motif on its N-terminal region. However, while they show a typical MPN metalloprotease fold, they lack the canonical JAMM motif, and therefore do not show catalytic isopeptidase activity. It is suggested that Rpn7 function is primarily structural.
Probab=63.31 E-value=83 Score=32.16 Aligned_cols=69 Identities=14% Similarity=0.215 Sum_probs=50.2
Q ss_pred CcceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHhhhccC
Q 011563 24 LSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQVSRMLL 103 (483)
Q Consensus 24 ~~~~~GLLIGq~s~~~~rd~Vv~li~TP~~d~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~iD~eWVaeHArQVsRMLP 103 (483)
...++|.|+|+... ..=-|.+..+.|.+++++.. +.-.+|.+|..+--.+--+.-|
T Consensus 25 ~~~ViG~LLG~~~~--~~veItnsF~~p~~~~~~~~----------------------~~~~~d~~y~~~m~~~~kkv~~ 80 (280)
T cd08062 25 SKRVVGVLLGSWKK--GVLDVTNSFAVPFEEDEKDP----------------------SVWFLDHNYLENMYGMFKKVNA 80 (280)
T ss_pred CceEEEEEEEEEeC--CEEEEEEeeecCccCCCCCc----------------------chhhhhHHHHHHHHHHHHHhCC
Confidence 46799999999965 44445567788886554310 1235889998877777777777
Q ss_pred cceEEEEEEEEecc
Q 011563 104 GGIKVVGIYVWATD 117 (483)
Q Consensus 104 GGi~VlGifv~~~~ 117 (483)
. ..|||-|-.+|.
T Consensus 81 ~-e~vVGWY~tg~~ 93 (280)
T cd08062 81 K-EKIVGWYSTGPK 93 (280)
T ss_pred C-CCeEEEecCCCC
Confidence 6 799999999876
No 14
>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding). This family contains archaeal and bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=50.60 E-value=57 Score=28.83 Aligned_cols=68 Identities=24% Similarity=0.287 Sum_probs=39.2
Q ss_pred ceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHhhhccCcc
Q 011563 26 AQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQVSRMLLGG 105 (483)
Q Consensus 26 ~~~GLLIGq~s~~~~rd~Vv~li~TP~~d~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~iD~eWVaeHArQVsRMLPGG 105 (483)
=.+|||+|.... +.-.|....|.|....+. ..--.+|.+......+.. -.-|
T Consensus 18 E~cGlL~G~~~~--~~~~i~~~~p~~n~~~~~-----------------------~~~f~~d~~~~~~~~~~~---~~~g 69 (128)
T cd08070 18 ECCGLLLGKGGG--VTAIVTEVYPVRNVAESP-----------------------RRRFEIDPAEQLAAQREA---RERG 69 (128)
T ss_pred ceEEEEEeecCC--CCceEEEEEEccCCCCCC-----------------------CceEEECHHHHHHHHHHH---HHCC
Confidence 368999999866 544555555555432221 001235654333322222 2448
Q ss_pred eEEEEEEEEecchhhc
Q 011563 106 IKVVGIYVWATDSAFK 121 (483)
Q Consensus 106 i~VlGifv~~~~~~~~ 121 (483)
+.|+|+|=..|.....
T Consensus 70 ~~~vG~~HSHP~~~~~ 85 (128)
T cd08070 70 LEVVGIYHSHPDGPAR 85 (128)
T ss_pred CeEEEEEeCCCCCCCC
Confidence 9999999999985333
No 15
>PF15345 TMEM51: Transmembrane protein 51
Probab=47.96 E-value=24 Score=35.23 Aligned_cols=56 Identities=29% Similarity=0.389 Sum_probs=31.8
Q ss_pred cccccccCCCCCCCCCCCCCccccCC-cccCcCCCccchHHHHHHHHHHHHHHHHHH
Q 011563 421 SFWDVVVPFSSGGSSSSSASKGIETS-KEKTEYPVKTANFNIMAAVFFLLLSILVGF 476 (483)
Q Consensus 421 s~~d~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~a~~~ll~~i~~~~ 476 (483)
-.|.+++++..+.....+++.....+ ..+.+++..-.|+-+.+++++|||||.++.
T Consensus 24 ~vW~~VPg~~~~~~~~~~~~n~~~~~~~~~ksKt~SVAyVLVG~Gv~LLLLSICL~I 80 (233)
T PF15345_consen 24 IVWNLVPGFSSGNKPTPQGSNSTEPSDGNLKSKTFSVAYVLVGSGVALLLLSICLSI 80 (233)
T ss_pred eeeeecccccCCCCCCCCCCCCcCCCCCcccceeEEEEEehhhHHHHHHHHHHHHHH
Confidence 36887655444333333443332222 223333334457788888999999999873
No 16
>cd07767 MPN Mpr1p, Pad1p N-terminal (MPN) domains. MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains are found in the N-terminal termini of proteins with a variety of functions; they are components of the proteasome regulatory subunits, the signalosome (CSN), eukaryotic translation initiation factor 3 (eIF3) complexes, and regulators of transcription factors. These domains are isopeptidases that release ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. Catalytically active MPN domains contain a metalloprotease signature known as the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif. For example, Rpn11 (also known as POH1 or PSMD14), a subunit of the 19S proteasome lid is involved in the ATP-dependent degradation of ubiquitinated proteins, contains the conserved JAMM motif involved in zinc ion coordination. Poh1 is a regulator of c-Jun, an important regulator of cell proliferation, differentiation, survival and death. J
Probab=37.37 E-value=2.2e+02 Score=23.95 Aligned_cols=20 Identities=25% Similarity=0.498 Sum_probs=15.9
Q ss_pred hccCcceEEEEEEEEecchh
Q 011563 100 RMLLGGIKVVGIYVWATDSA 119 (483)
Q Consensus 100 RMLPGGi~VlGifv~~~~~~ 119 (483)
++..=|+.+||.|-..|...
T Consensus 57 ~~~~~~~~iVGwyhshp~~~ 76 (116)
T cd07767 57 KKLNAGLRIVGWYHTHPKPS 76 (116)
T ss_pred HHhcCCCeEEEEEEcCCCCC
Confidence 44456999999999988753
No 17
>PLN03246 26S proteasome regulatory subunit; Provisional
Probab=37.16 E-value=1.3e+02 Score=31.11 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=48.9
Q ss_pred CcceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHhhhccC
Q 011563 24 LSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQVSRMLL 103 (483)
Q Consensus 24 ~~~~~GLLIGq~s~~~~rd~Vv~li~TP~~d~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~iD~eWVaeHArQVsRMLP 103 (483)
...++|.|+|+... ..=-|-+..+.|.+++++. ...-.+|.+|..+--++--+.-|
T Consensus 30 ~~rviG~LLG~~~~--~~ieItnsF~~p~~e~~~~----------------------~~~~~~D~~y~~~m~~~~k~V~~ 85 (303)
T PLN03246 30 RKRVVGVLLGSSFR--GRVDVTNSFAVPFEEDDKD----------------------PSIWFLDHNYLESMFGMFKRINA 85 (303)
T ss_pred CCeeEEEEEeeecC--CEEEEEeccccCcccCCCC----------------------ccceeecHHHHHHHHHHHHHhCC
Confidence 46799999999865 4444555668887544321 01235889998887777777777
Q ss_pred cceEEEEEEEEecc
Q 011563 104 GGIKVVGIYVWATD 117 (483)
Q Consensus 104 GGi~VlGifv~~~~ 117 (483)
.= .|||-|-.+++
T Consensus 86 ~~-~vVGWY~tg~~ 98 (303)
T PLN03246 86 KE-HVVGWYSTGPK 98 (303)
T ss_pred CC-cEEeeecCCCC
Confidence 65 99999998876
No 18
>PRK01844 hypothetical protein; Provisional
Probab=34.03 E-value=52 Score=27.11 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Q 011563 458 NFNIMAAVFFLLLSILVGFVLIAK 481 (483)
Q Consensus 458 ~~~~~~a~~~ll~~i~~~~~~~~~ 481 (483)
.+.|+..++.|++.+++||+++.+
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ark 27 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777788899999999988754
No 19
>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f. Eukaryotic translation initiation factor 3 (eIF3) subunit F (eIF3F; EIF3S5; eIF3-p47; eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa; Mov34/MPN/PAD-1 family protein) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity. It has been shown that eIF3f mRNA expression is significantly decreased in many human tumors including pancreatic cancer and melanoma. EIF3f is a potent inhibitor of HIV-1 replication; it mediates restriction of HIV-1 expression through several factors including the serine/arginine-rich (SR) protein 9G8, and cyclin-dependent kinase 11 (CDK11). EIF3f phosphorylation by CDK11 is important in regulating its function in translation and ap
Probab=33.02 E-value=4.9e+02 Score=26.10 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=44.8
Q ss_pred CCcceEEEEeeecCCCCCccEEEEecCCCCCcccccccccCCCCCCCCCCCCCCCCCCcccccCCHHHHHHHHHHhhhcc
Q 011563 23 GLSAQVGLLIGKLSPTLDRGFIFDFIPTPQNDAGEAACSVSKDDKKKPPSKSKSQPSDSISLVIDKDWIAEHARQVSRML 102 (483)
Q Consensus 23 ~~~~~~GLLIGq~s~~~~rd~Vv~li~TP~~d~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~iD~eWVaeHArQVsRML 102 (483)
+...++|.|+|.... +.=-|-+..+.|.+++++. -.+|.+|..+--++--+.-
T Consensus 21 ~~~~V~G~LLG~~~~--~~veItnsF~~p~~~~~~~-------------------------~~~d~~y~~~m~~~~kkv~ 73 (265)
T cd08064 21 GQERVIGTLLGTRSE--GEVEITNCFAVPHNESEDQ-------------------------VAVDMEYHRTMYELHQKVN 73 (265)
T ss_pred CCcEEEEEEEEEEeC--CEEEEEeCeecceeCCCCe-------------------------EEEcHHHHHHHHHHHHHhC
Confidence 346799999999965 4444456678888665431 2477777765555444444
Q ss_pred CcceEEEEEEEEec
Q 011563 103 LGGIKVVGIYVWAT 116 (483)
Q Consensus 103 PGGi~VlGifv~~~ 116 (483)
| ...|||-|-.++
T Consensus 74 ~-~~~vVGWY~tg~ 86 (265)
T cd08064 74 P-KEVIVGWYATGS 86 (265)
T ss_pred C-CCcEEeeeeCCC
Confidence 4 459999999988
No 20
>cd08066 MPN_AMSH_like Mov34/MPN/PAD-1 family. AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM (signal-transducing adapter molecule, also known as STAMBP)) and AMSH-like proteins (AMSH-LP) are members of JAMM/MPN+ deubiquitinases (DUBs), with Zn2+-dependent ubiquitin isopeptidase activity. AMSH specifically cleaves Lys 63 and not Lys48-linked polyubiquitin (poly-Ub) chains, thus facilitating the recycling and subsequent trafficking of receptors to the cell surface. AMSH and AMSH-LP are anchored on the early endosomal membrane via interaction with the clathrin coat. AMSH shares a common SH3-binding site with another endosomal DUB, UBPY (ubiquitin-specific protease Y; also known as USP8), the latter being a cysteine protease that does not discriminate between Lys48 and Lys63-linked ubiquitin. AMSH is involved in the degradation of EGF receptor (EGFR) and possibly other ubiquitinated endocytosed proteins. AMSH also interacts with CHMP1, CHMP2, and CHMP3 proteins, al
Probab=29.68 E-value=4.1e+02 Score=25.11 Aligned_cols=34 Identities=29% Similarity=0.269 Sum_probs=22.3
Q ss_pred cEEEecChhhHHHHHHHhhcCCc---ceEEEEeeecCC
Q 011563 3 NTVVVEKPQLLSAEDRLSQSGLS---AQVGLLIGKLSP 37 (483)
Q Consensus 3 Rtvi~ee~~v~~y~~~L~~~~~~---~~~GLLIGq~s~ 37 (483)
|.++..+..++++++--.. ..+ =++|||+|+...
T Consensus 2 ~~l~Ipk~il~~~l~~A~~-~~~~p~E~cGlL~G~~~~ 38 (173)
T cd08066 2 RQVVVPADLMDKFLQLAEP-NTSRNLETCGILCGKLSN 38 (173)
T ss_pred eEEEECHHHHHHHHHHHHh-CCCCCCeEEEEEEeEcCC
Confidence 5677777766666655433 322 478999999754
No 21
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex. BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai
Probab=28.46 E-value=3.4e+02 Score=27.39 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=24.8
Q ss_pred ccCCHHHHHHHHHHhhh---ccCcceEEEEEEEEecchh
Q 011563 84 LVIDKDWIAEHARQVSR---MLLGGIKVVGIYVWATDSA 119 (483)
Q Consensus 84 ~~iD~eWVaeHArQVsR---MLPGGi~VlGifv~~~~~~ 119 (483)
-.+|.+=.....+++.+ +.==|+.|+|+|=..|.-.
T Consensus 64 ~eidPee~~~a~~ea~~~~~~~~rgl~vVGwYHSHP~~~ 102 (244)
T cd08068 64 VEISPEQLSAASTEAERLTEETGRPMRVVGWYHSHPHIT 102 (244)
T ss_pred EEeCHHHHHHHHHHHHHHHhhccCCceEEEEEecCCCCC
Confidence 35777766555555555 4446899999999999743
No 22
>PRK00523 hypothetical protein; Provisional
Probab=26.29 E-value=85 Score=25.89 Aligned_cols=23 Identities=13% Similarity=0.387 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 011563 459 FNIMAAVFFLLLSILVGFVLIAK 481 (483)
Q Consensus 459 ~~~~~a~~~ll~~i~~~~~~~~~ 481 (483)
+.|+..++.|++.+++||+++.+
T Consensus 6 l~I~l~i~~li~G~~~Gffiark 28 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKK 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677788899999987654
No 23
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=25.48 E-value=83 Score=26.22 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 011563 460 NIMAAVFFLLLSILVGFVLIAKK 482 (483)
Q Consensus 460 ~~~~a~~~ll~~i~~~~~~~~~~ 482 (483)
-+++|+++||+++-.-|+|..++
T Consensus 53 l~l~ail~lL~a~Ya~fyl~ls~ 75 (79)
T PF15168_consen 53 LVLAAILVLLLAFYAFFYLNLSK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 46788999999988888877654
No 24
>PF00556 LHC: Antenna complex alpha/beta subunit; InterPro: IPR000066 The antenna complexes of photosynthetic bacteria function as light-harvesting systems that absorb light and transfer the excitation energy to the reaction centres. The antenna complexes usually comprise 2 polypeptides (alpha- and beta-chains), 2-3 bacteriochlorophyll molecules and some carotenoids [, ]. The alpha- and beta-chains are small proteins of 40-70 residues. Each has an N-terminal hydrophilic cytoplasmic domain, a single transmembrane (TM) region, and a small C-terminal hydrophilic periplasmic domain. In both chains, the TM domain houses a conserved His residue, presumed to be involved in binding the magnesium atom of a bacteriochlorophyll group. The beta-chains are characterised by a further histidine at the C-terminal extremity of the cytoplasmic domain, which is also thought to be involved in bacteriochlorophyll binding.; GO: 0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0019684 photosynthesis, light reaction, 0016021 integral to membrane, 0030077 plasma membrane light-harvesting complex; PDB: 1LGH_J 1XRD_A 1NKZ_D 1KZU_B 2FKW_B 1IJD_E 1DX7_A 1JO5_A 1WRG_A.
Probab=22.94 E-value=96 Score=22.37 Aligned_cols=25 Identities=12% Similarity=0.111 Sum_probs=19.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhh
Q 011563 456 TANFNIMAAVFFLLLSILVGFVLIA 480 (483)
Q Consensus 456 ~~~~~~~~a~~~ll~~i~~~~~~~~ 480 (483)
+++.+++...+++.+|+++|+++..
T Consensus 10 p~~~~~~~~~~~~viAl~~H~lv~~ 34 (40)
T PF00556_consen 10 PRVGLPALFGAFAVIALLAHFLVLS 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666778888999999997764
No 25
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic. This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot
Probab=20.63 E-value=4.6e+02 Score=22.65 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=17.7
Q ss_pred hhccCcceEEEEEEEEecc-hhhcc
Q 011563 99 SRMLLGGIKVVGIYVWATD-SAFKN 122 (483)
Q Consensus 99 sRMLPGGi~VlGifv~~~~-~~~~~ 122 (483)
.++--=|+.+||+|=.+|. ..+-.
T Consensus 58 ~~~~~~g~~~vG~YHSHP~~~~~pS 82 (119)
T cd08058 58 NVQTGRPLLVVGWYHSHPTFTAWLS 82 (119)
T ss_pred HHHhCCCCeEEEEEecCCCCCCccC
Confidence 3556669999999999994 44444
Done!