Query 011563
Match_columns 483
No_of_seqs 96 out of 106
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 10:45:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011563.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011563hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2q1ma1 b.22.1.1 (A:57-172) Gl 58.2 3.4 0.00025 32.6 3.3 91 178-292 1-96 (116)
2 d2q8oa1 b.22.1.1 (A:49-173) Gl 56.9 4.7 0.00034 32.2 3.9 92 177-291 2-99 (125)
3 d1xrda1 f.3.1.1 (A:1-52) Light 44.2 7.7 0.00056 27.0 2.9 26 455-480 9-34 (52)
4 d1dt9a3 d.91.1.1 (A:5-142) N-t 20.3 19 0.0013 29.9 1.7 27 358-388 109-135 (138)
5 d1oi0a_ c.97.3.1 (A:) Hypothet 16.5 1.2E+02 0.0085 23.6 5.9 21 101-121 58-78 (121)
6 d1tkea1 d.15.10.1 (A:1-62) Thr 9.8 1E+02 0.0075 21.1 3.1 25 235-261 37-61 (62)
7 d1jb0m_ f.23.19.1 (M:) Subunit 8.9 1.6E+02 0.012 17.6 3.2 21 460-480 7-27 (31)
8 d1wgga_ d.15.1.1 (A:) Ubiquiti 8.7 1.9E+02 0.014 21.1 4.6 38 364-401 9-46 (96)
9 d2dmda1 g.37.1.1 (A:34-61) Zin 8.2 14 0.0011 22.0 -1.9 15 158-172 2-16 (28)
10 d1v5ta_ d.15.1.1 (A:) 8430435i 7.7 2.1E+02 0.015 20.5 4.3 38 365-402 10-47 (90)
No 1
>d2q1ma1 b.22.1.1 (A:57-172) Glucocorticoid-induced TNF-related ligand, TNFSF18 {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.25 E-value=3.4 Score=32.62 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=54.4
Q ss_pred cceeeecccccceeEEEEEeeeceeeeeeecCCCCcchHHHHHHHHHHHHHHhhhcceEEEcCeeccCCCCCCCCCceEE
Q 011563 178 PCDLKTGLVLKTLRTFKCTYNFSLRLPIRLVGASNTQTFSDILRQGISVHANELRGAKAVVDGNFVVNDEPCSTDGLHEV 257 (483)
Q Consensus 178 PaDwK~q~~~~sw~~l~c~~~~d~~lPl~~~~~~~~~~l~~~l~~~l~~~~~~l~~s~~lidG~~~~~d~~l~~~g~~~v 257 (483)
||=.||...+++|+.-.-. .|-.+..+ .+.+ +-|+++++||=|++.++..- ....||.|
T Consensus 1 pC~~KF~~l~SKWqm~sp~------p~CVn~ts--D~~L------------~ILQnGlYLIYGQV~Pn~~Y-k~~APF~V 59 (116)
T d2q1ma1 1 PCMAKFGPLPSKWQMASSE------PPCVNKVS--DWKL------------EILQNGLYLIYGQVAPNANY-NDVAPFEV 59 (116)
T ss_dssp CCEEEECSTTCCEEEECCS------SCSEEEEE--TTEE------------EECSCEEEEEEEEECBCTTC-CSSSCCCE
T ss_pred CcceeeccCCcccccCCCC------CCcccccc--hHHh------------HhhhCceEEEEEEEcCCccc-CCCCCeEE
Confidence 7888999999999853210 01111100 1121 35699999999999995543 34558899
Q ss_pred EEeeccCCCCCc----cccccccceeeEEE-EeEEEEEEE
Q 011563 258 ELLLPLLNDTSA----EACSQKDVVGLLIL-SGSVCSFAF 292 (483)
Q Consensus 258 ~ll~p~~~~~~~----~~~~~~~~~G~l~~-~G~v~~rAy 292 (483)
+++-. +... ..+.++.++|.-.| .|.+.-..|
T Consensus 60 ~l~kn---~d~iQtLtN~~~i~~vGG~YElhaGD~i~L~F 96 (116)
T d2q1ma1 60 RLYKN---KDMIQTLTNKSKIQNVGGTYELHVGDTIDLIF 96 (116)
T ss_dssp EEEET---TEEEEEECCSSSCEECCEEEEECTTCEEEEEE
T ss_pred EEeec---CcHHHhhhccceEEEcCcEEEecCCCEEEEEE
Confidence 88752 1111 33456778887666 355544443
No 2
>d2q8oa1 b.22.1.1 (A:49-173) Glucocorticoid-induced TNF-related ligand, TNFSF18 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=56.86 E-value=4.7 Score=32.17 Aligned_cols=92 Identities=11% Similarity=0.115 Sum_probs=54.7
Q ss_pred CcceeeecccccceeEEEEEeeeceeeeeeecCCCCcchHHHHHHHHHHHHHHhhhcceEEEcCeeccCCCCC-CCCCce
Q 011563 177 RPCDLKTGLVLKTLRTFKCTYNFSLRLPIRLVGASNTQTFSDILRQGISVHANELRGAKAVVDGNFVVNDEPC-STDGLH 255 (483)
Q Consensus 177 kPaDwK~q~~~~sw~~l~c~~~~d~~lPl~~~~~~~~~~l~~~l~~~l~~~~~~l~~s~~lidG~~~~~d~~l-~~~g~~ 255 (483)
.||=.||...+++|+.-.- ..|-.+..+ .+.+ +-|+++++||=|++.+-|..- ....||
T Consensus 2 epCm~KF~~l~SKWqm~sp------~p~CVn~ts--D~~L------------~ILQnG~YLIYGQV~Pv~~~~~k~~APF 61 (125)
T d2q8oa1 2 ESCMVKFELSSSKWHMTSP------KPHCVNTTS--DGKL------------KILQSGTYLIYGQVIPVDKKYIKDNAPF 61 (125)
T ss_dssp CCCEEEEETTTTEEEESSS------SCSSEEECT--TSCE------------EECSCEEEEEEEEECBCCGGGCCSCCCE
T ss_pred CcceEEeccCCcccccCCC------CCCcccccc--hHHh------------HhhhCceEEEEEEEecCccccccCCCCe
Confidence 4889999999999984211 001111111 1221 356999999999999855443 344589
Q ss_pred EEEEeeccCCCCCc----cccccccceeeEEE-EeEEEEEE
Q 011563 256 EVELLLPLLNDTSA----EACSQKDVVGLLIL-SGSVCSFA 291 (483)
Q Consensus 256 ~v~ll~p~~~~~~~----~~~~~~~~~G~l~~-~G~v~~rA 291 (483)
.|+++- ++... ..+.++.++|.-.+ .|.+.-..
T Consensus 62 ~V~l~k---~~d~iQtLtN~~~i~~vGG~YElhaGD~i~L~ 99 (125)
T d2q8oa1 62 VVQIYK---KNDVLQTLMNDFQILPIGGVYELHAGDNIYLK 99 (125)
T ss_dssp EEEEEE---TTEEEEEEEESSCCEEEEEEEEECTTCEEEEE
T ss_pred EEEEee---cCcHHHhhhccceEEecCcEEEecCCCEEEEE
Confidence 999975 22111 33456777787666 34444333
No 3
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=44.24 E-value=7.7 Score=27.00 Aligned_cols=26 Identities=23% Similarity=0.521 Sum_probs=21.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhh
Q 011563 455 KTANFNIMAAVFFLLLSILVGFVLIA 480 (483)
Q Consensus 455 ~~~~~~~~~a~~~ll~~i~~~~~~~~ 480 (483)
-|+...++.+++..++++++||+|..
T Consensus 9 DPRr~lva~~~fL~~LAl~IHfiLLS 34 (52)
T d1xrda1 9 DPRQALVGLATFLFVLALLIHFILLS 34 (52)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677888888999999999998853
No 4
>d1dt9a3 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.32 E-value=19 Score=29.90 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=18.6
Q ss_pred CCCCCceEEeecCCceeeeeecCCCCCHHHH
Q 011563 358 GLSFPRRVFVPWLADTYICDYLQPSETLEVL 388 (483)
Q Consensus 358 ~~~lPRRV~vp~~~~v~~cDYLF~~E~~~d~ 388 (483)
.+++|+ |+...++.||=-|.=|..++.
T Consensus 109 ~iePp~----pi~~~~Y~CD~~F~~e~L~~m 135 (138)
T d1dt9a3 109 DFEPFK----PINTSLYLCDNKFHTEALTAL 135 (138)
T ss_dssp EECCSC----CTTCCEEEEESSCCCHHHHHH
T ss_pred EecCCC----cccceEEEcCCeeehHHHHHH
Confidence 455554 444558999999997766654
No 5
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=16.53 E-value=1.2e+02 Score=23.60 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=14.8
Q ss_pred ccCcceEEEEEEEEecchhhc
Q 011563 101 MLLGGIKVVGIYVWATDSAFK 121 (483)
Q Consensus 101 MLPGGi~VlGifv~~~~~~~~ 121 (483)
|++=|+.|+|+|-..|.....
T Consensus 58 ~~~~~~~ivgi~HSHP~~~a~ 78 (121)
T d1oi0a_ 58 MLPIGMKVFGTVHSHPSPSCR 78 (121)
T ss_dssp ---CCCEEEEEEEEESSSCCS
T ss_pred hhhcCCeEEEEEEecCCCCCC
Confidence 345588999999999975444
No 6
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]}
Probab=9.80 E-value=1e+02 Score=21.07 Aligned_cols=25 Identities=16% Similarity=0.314 Sum_probs=18.5
Q ss_pred eEEEcCeeccCCCCCCCCCceEEEEee
Q 011563 235 KAVVDGNFVVNDEPCSTDGLHEVELLL 261 (483)
Q Consensus 235 ~~lidG~~~~~d~~l~~~g~~~v~ll~ 261 (483)
.+.+||++++-+.++..++ .|++++
T Consensus 37 aa~vng~l~dL~~~l~~d~--~veiiT 61 (62)
T d1tkea1 37 AGRVNGELVDACDLIENDA--QLSIIT 61 (62)
T ss_dssp EEEETTEEEETTCCBCSCE--EEEEEC
T ss_pred EEEECCEEeCCCcCcCCCC--EEEEEe
Confidence 4579999999999886555 555543
No 7
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=8.90 E-value=1.6e+02 Score=17.59 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 011563 460 NIMAAVFFLLLSILVGFVLIA 480 (483)
Q Consensus 460 ~~~~a~~~ll~~i~~~~~~~~ 480 (483)
-+.+|+.|.|+.-+++|-|+.
T Consensus 7 qv~valvial~pg~lafrlat 27 (31)
T d1jb0m_ 7 QVYVALVIALLPAVLAFRLST 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888887654
No 8
>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.69 E-value=1.9e+02 Score=21.13 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=30.7
Q ss_pred eEEeecCCceeeeeecCCCCCHHHHHHHHHHHhCCCCC
Q 011563 364 RVFVPWLADTYICDYLQPSETLEVLKEHCVELMSMEAL 401 (483)
Q Consensus 364 RV~vp~~~~v~~cDYLF~~E~~~d~~~~~~ElLdl~~~ 401 (483)
.|.|-|.++.++.-.+=++++..++++++.+..++...
T Consensus 9 ~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~ 46 (96)
T d1wgga_ 9 SVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPA 46 (96)
T ss_dssp EEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHhhhhcCccce
Confidence 35667766666667788999999999999999987665
No 9
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.24 E-value=14 Score=21.98 Aligned_cols=15 Identities=20% Similarity=0.762 Sum_probs=11.3
Q ss_pred CeEEEEEeeecCCCC
Q 011563 158 RRYTCRNCTITSNIT 172 (483)
Q Consensus 158 kk~~Ck~~dv~~~~~ 172 (483)
|++-|+.||++..|+
T Consensus 2 kp~kck~cdyaaads 16 (28)
T d2dmda1 2 KPYKCKTCDYAAADS 16 (28)
T ss_dssp CSEECSSSCCEESSH
T ss_pred CCcccccccchhcch
Confidence 678899998876643
No 10
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.68 E-value=2.1e+02 Score=20.53 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=27.8
Q ss_pred EEeecCCceeeeeecCCCCCHHHHHHHHHHHhCCCCCC
Q 011563 365 VFVPWLADTYICDYLQPSETLEVLKEHCVELMSMEALS 402 (483)
Q Consensus 365 V~vp~~~~v~~cDYLF~~E~~~d~~~~~~ElLdl~~~~ 402 (483)
|.|-|.+.-+.-.=+-++++..++++++.+..++....
T Consensus 10 i~Vk~~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~ 47 (90)
T d1v5ta_ 10 IIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPER 47 (90)
T ss_dssp EEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTT
T ss_pred EEEEECCeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHH
Confidence 67777443332223788999999999999999877653
Done!