Query 011565
Match_columns 483
No_of_seqs 481 out of 1484
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 10:47:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011565.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011565hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.5E-46 5.2E-51 368.3 40.5 427 43-482 5-479 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 4.9E-41 1.7E-45 325.6 14.1 392 45-465 23-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 1E-38 3.5E-43 308.1 23.7 355 52-457 28-424 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 1.5E-34 5.3E-39 283.0 30.6 389 80-471 49-477 (491)
5 2gfp_A EMRD, multidrug resista 100.0 2E-35 6.7E-40 279.0 6.4 359 54-458 4-368 (375)
6 2cfq_A Lactose permease; trans 100.0 5.3E-32 1.8E-36 258.7 2.6 367 67-471 24-405 (417)
7 2xut_A Proton/peptide symporte 100.0 7.7E-30 2.6E-34 251.7 17.5 393 75-474 38-511 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.5 5.7E-14 1.9E-18 135.4 11.3 152 69-220 271-433 (451)
9 2cfq_A Lactose permease; trans 99.4 5.3E-13 1.8E-17 127.1 7.2 142 83-224 257-404 (417)
10 3o7q_A L-fucose-proton symport 99.4 6.8E-12 2.3E-16 120.3 13.8 134 298-440 41-177 (438)
11 4gc0_A D-xylose-proton symport 99.3 3.3E-12 1.1E-16 124.4 8.5 154 70-224 297-467 (491)
12 2gfp_A EMRD, multidrug resista 99.3 7.4E-12 2.5E-16 117.4 10.5 159 300-470 17-179 (375)
13 2xut_A Proton/peptide symporte 99.3 3.4E-11 1.2E-15 118.3 14.5 134 318-463 57-196 (524)
14 4aps_A DI-OR tripeptide H+ sym 99.2 2E-11 6.9E-16 118.9 9.9 139 313-463 49-194 (491)
15 3mkt_A Multi antimicrobial ext 67.4 78 0.0027 29.2 18.1 26 161-186 147-172 (460)
16 2g9p_A Antimicrobial peptide l 65.7 3 0.0001 19.7 1.3 14 104-117 2-15 (26)
17 4dve_A Biotin transporter BIOY 28.1 1.5E+02 0.0051 23.9 6.3 25 91-115 99-123 (198)
18 4f4c_A Multidrug resistance pr 24.6 6E+02 0.021 27.6 12.2 17 196-212 233-249 (1321)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.5e-46 Score=368.35 Aligned_cols=427 Identities=28% Similarity=0.499 Sum_probs=339.2
Q ss_pred CchhHHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcC--------chhHHHHHHHHHHHHHHHHHHhHHHhhhhhch
Q 011565 43 DSLYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSL--------SLAEYSVFGSILTFGAMIGAITSGPIADFIGR 114 (483)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Gr 114 (483)
.++++.+.+.++.+++.+.++++.+.++..+|.+.++++. ++.+.|++.+++.+|..++++++|+++||+||
T Consensus 5 ~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GR 84 (491)
T 4gc0_A 5 YNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGR 84 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCH
T ss_pred cChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456778888888899999999999999999999988743 34567999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHH------------------HhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHH
Q 011565 115 KGAMRVSSFVCIAGWLAIY------------------FSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALT 176 (483)
Q Consensus 115 r~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~ 176 (483)
|++++++.+++.+++++++ +++|+++++++|+++|++.|+..+...++++|+.|+++|++..
T Consensus 85 k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~ 164 (491)
T 4gc0_A 85 RDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV 164 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence 9999999999999999999 4789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhc------------cchhHHHHHHhHHHHHHHHHHhhcCCCChhHHHhhCCHHHHHHHHHHHh
Q 011565 177 SANQLLIVIGASTFFIIGT------------VATWRTLALVGVIPCAVLLLGLFLIPESPRWLAKIGKHEEFEAALQKLR 244 (483)
Q Consensus 177 ~~~~~~~~iG~~~~~~l~~------------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~ 244 (483)
++.+.+..+|..+++.++. ..+||+.+.+..+..++.++..+++||+|+|+..+++.+++.+.+++..
T Consensus 165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~ 244 (491)
T 4gc0_A 165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIM 244 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhc
Confidence 9999999999998887764 2368999999998888888889999999999999999999999888775
Q ss_pred cCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCc---hHH
Q 011565 245 GKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPS---TGT 321 (483)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 321 (483)
.++...++..+..+...+.++ ...... ....++..+......+..+.....+..|.+.+.+..+.+.. ...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (491)
T 4gc0_A 245 GNTLATQAVQEIKHSLDHGRK---TGGRLL---MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQT 318 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HTTHHH---HSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHhhhh---hhhHHH---HhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHH
Confidence 443222221111111111111 111111 12233445555556666666777888888888887776643 344
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccch
Q 011565 322 ISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATP 401 (483)
Q Consensus 322 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (483)
...++..+++.++++++.||+|||+.+..+...+.++++.+...... .......+....++...+..+..++.
T Consensus 319 ~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (491)
T 4gc0_A 319 IIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-------QAPGIVALLSMLFYVAAFAMSWGPVC 391 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-------TCCHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-------ccchHHHHHHHHHHHHHHHhHHHHHH
Confidence 56677888999999999999999999998888887777666554321 11333444445555556666777888
Q ss_pred hhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHHhcccCCCCCCH
Q 011565 402 WVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-------WSSYGTFLLYAAVNILGIVFITTVVPETKGRTL 474 (483)
Q Consensus 402 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (483)
+.+.+|++|++.|+++.|+.+..+++++++++.+.+.+.+ .+....+++++++++++.++.++++||||+|+.
T Consensus 392 ~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tL 471 (491)
T 4gc0_A 392 WVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL 471 (491)
T ss_dssp HHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCH
T ss_pred HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCH
Confidence 8999999999999999999999999999999988877654 233456788888999998888999999999999
Q ss_pred HHHHHhhc
Q 011565 475 EEIQATMN 482 (483)
Q Consensus 475 ~~~~~~~~ 482 (483)
||+|+.||
T Consensus 472 eei~~~f~ 479 (491)
T 4gc0_A 472 EELEALWE 479 (491)
T ss_dssp HHHGGGTC
T ss_pred HHHHHHhC
Confidence 99998886
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=4.9e-41 Score=325.61 Aligned_cols=392 Identities=13% Similarity=0.083 Sum_probs=291.2
Q ss_pred hhHHHHHHHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHH
Q 011565 45 LYMVYLSTLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFV 124 (483)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~ 124 (483)
++.++......++..+...++.....+.+|.+.+++ .++.+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 345566677777788888888888999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH----hhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----c
Q 011565 125 CIAGWLAIYF----SEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----V 196 (483)
Q Consensus 125 ~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~ 196 (483)
.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++ .
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999988876 4
Q ss_pred ch-hHHHHHHhHHHHHHH-HHHhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHH
Q 011565 197 AT-WRTLALVGVIPCAVL-LLGLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLD 274 (483)
Q Consensus 197 ~~-wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (483)
.+ ||+.|++.+++.++. ++.++++||+|++...+++.+. ....+.+ .++..+++....+...++
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~---~~~~~~~~~~~~~~~~~~ 247 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYPDD---YNEKAEQELTAKQIFMQY 247 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC----------------CCTHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------ccccccc---chhhhhcccccccchHHH
Confidence 57 999999988877664 4456778888753211111100 0000000 000001111112222456
Q ss_pred hhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHH-cCCCC---chHHHHHHHHHHHHHHHHHHHHhhc--CCccch
Q 011565 275 LFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQT-AGLSP---STGTISYALLQVVVTFFNIIMIDRA--GRKPLL 348 (483)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~ 348 (483)
.++++.++...+..++..+. ......+.+.++++ .+.+. +.......++.+++.++.+++.||+ +||+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 323 (451)
T 1pw4_A 248 VLPNKLLWYIAIANVFVYLL----RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 323 (451)
T ss_dssp TSSCHHHHHHHHHHHHHHHH----HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence 67776666555554444443 33445556666555 46665 3455566778889999999999999 998887
Q ss_pred hhHhHHHH-HHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHH
Q 011565 349 LFAATGLL-LGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWF 427 (483)
Q Consensus 349 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 427 (483)
..+..+.. ++++++.. .+..+.+......++.+.+.....+....+..|.+|++.|+++.|+.+...++
T Consensus 324 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 393 (451)
T 1pw4_A 324 GVFFMTLVTIATIVYWM----------NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 393 (451)
T ss_dssp HHHHHHHHHHHHHHTTS----------CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------hcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence 76665554 44333322 11123444555555666666666677778999999999999999999999999
Q ss_pred -HHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHhc
Q 011565 428 -GAWAISYTFNFLET-WSSYGTFLLYAAVNILGIVFITTV 465 (483)
Q Consensus 428 -g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 465 (483)
|..++|.+.|.+.+ .++...+.+.+++.+++.++.++.
T Consensus 394 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 394 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 566666777777666666555443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1e-38 Score=308.11 Aligned_cols=355 Identities=15% Similarity=0.072 Sum_probs=270.3
Q ss_pred HHHHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHH
Q 011565 52 TLVAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLA 131 (483)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~ 131 (483)
..++++..+..+++.....+.+|.+.+++|+++.+.|++.+.+.+++.++++++|+++||+|||++++++.++.+++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 107 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 34445555666667778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred H---HHhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhccc-----h-----
Q 011565 132 I---YFSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGTVA-----T----- 198 (483)
Q Consensus 132 ~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~~~-----~----- 198 (483)
+ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.. +
T Consensus 108 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 187 (438)
T 3o7q_A 108 FWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQD 187 (438)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHH
T ss_pred HHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 9 88999999999999999999999999999999999999999999999999999999999887732 2
Q ss_pred --------------------hHHHHHHhHHHHHHHHHHh--hcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHH
Q 011565 199 --------------------WRTLALVGVIPCAVLLLGL--FLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATE 256 (483)
Q Consensus 199 --------------------wr~~f~~~~~~~~~~~~~~--~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (483)
||+.|++.++..++..+.. ...||+++. ++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~----------------------- 241 (438)
T 3o7q_A 188 VLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHSD----------------------- 241 (438)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCCC-----------------------
T ss_pred ccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cccc-----------------------
Confidence 9999988766655544333 334555421 0000
Q ss_pred HHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhccchhhhHHhHHHH-HHHc-CCCC---chHHHHHHHHHHHH
Q 011565 257 IQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANI-FQTA-GLSP---STGTISYALLQVVV 331 (483)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~---~~~~~~~~~~~~~~ 331 (483)
++++..+.++++++|++.++...+..++...... ....+.+.+ .++. |.+. +.......++.+++
T Consensus 242 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 311 (438)
T 3o7q_A 242 ------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQT----ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIG 311 (438)
T ss_dssp ------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHH
Confidence 0112234556778888877776666555555433 333444544 4444 6664 34555667788899
Q ss_pred HHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCC
Q 011565 332 TFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPI 411 (483)
Q Consensus 332 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 411 (483)
+++.+++.||++||+.+..+..+..++++++... ... .......+.+++.+...+...++..|.+|+
T Consensus 312 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 378 (438)
T 3o7q_A 312 RFTGTWLISRFAPHKVLAAYALIAMALCLISAFA------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQ 378 (438)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC------------CHH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGG
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc------------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999888887777766555442 222 233334556666677778888888899996
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hh-hhHHHHHHHHHHHH
Q 011565 412 NIKGVGGSLTTLVNWFGAWAISYTFNFLET-WS-SYGTFLLYAAVNIL 457 (483)
Q Consensus 412 ~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~-~~~~~~~~~~~~~~ 457 (483)
+ ++.+.++.. ...+|..++|.+.|++.+ .+ ....+.+.+++.++
T Consensus 379 ~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 424 (438)
T 3o7q_A 379 D-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_dssp G-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred c-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 6 888888877 678999999999999998 44 45555554443333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=1.5e-34 Score=283.00 Aligned_cols=389 Identities=15% Similarity=0.038 Sum_probs=254.9
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHhHHHhhhh-hchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhcccccccc
Q 011565 80 LSLSLAEYSVFGSILTFGAMIGAITSGPIADF-IGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYV 158 (483)
Q Consensus 80 ~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 158 (483)
+|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred cchhhhcccCccc--hhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHHhh-cCCCCh----hHH
Q 011565 159 VPVFTAEIAPKEL--RGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLGLF-LIPESP----RWL 227 (483)
Q Consensus 159 ~~~~i~~~~~~~~--rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p----~~~ 227 (483)
..+++.|++|+++ |+.++++.+.+.++|..++|.+++ ..+||+.|++.++..++..+..+ ..|+.. +..
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRP 208 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCC
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCC
Confidence 9999999999988 777888888999999998888877 46899999998776666544432 222110 000
Q ss_pred HhhCCHHHHHHHHHH---------------HhcCcccchHHHHHHHH--------HHHHHccCchhhhHHhhhcCCcchH
Q 011565 228 AKIGKHEEFEAALQK---------------LRGKDADISQEATEIQE--------YIETLERLPKARLLDLFQKRYLHSV 284 (483)
Q Consensus 228 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (483)
.++.+.++.++..+. ......+.++....... ......+..+....+..+.......
T Consensus 209 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (491)
T 4aps_A 209 TDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPL 288 (491)
T ss_dssp SCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHH
T ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 011122222222221 00011111110000000 0000000000000011111111222
Q ss_pred HHHHHhhhhhhccchhhhHHhHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCccchh-----hHhHHHHHHH
Q 011565 285 TIGVGLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLL-----FAATGLLLGC 359 (483)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-----~~~~~~~~~~ 359 (483)
.+...+...........++.|.....+......+.......+..+++.++.+++.||++||+... .+..+.++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~ 368 (491)
T 4aps_A 289 FIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSF 368 (491)
T ss_dssp HHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHH
Confidence 22333333333333333444443332222234567777788888999999999999999987655 5555555555
Q ss_pred HHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 011565 360 LLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFL 439 (483)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~ 439 (483)
+++........ .....+........++.+.+.....+....++.|.+|++.|+++.|+.+....+|..++|.+.+++
T Consensus 369 ~~~~~~~~~~~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~ 445 (491)
T 4aps_A 369 LLMAIPGALYG---TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLY 445 (491)
T ss_dssp TTTHHHHHHCC---CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHhcC---CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444321111 011234555566666777777777788889999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhcccCCCC
Q 011565 440 ETWSSYGTFLLYAAVNILGIVFITTVVPETKG 471 (483)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (483)
.+.+....+...+++++++.++.++..++.++
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 446 NAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp GGSSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777888887777777776666655444
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=2e-35 Score=278.98 Aligned_cols=359 Identities=14% Similarity=0.064 Sum_probs=268.5
Q ss_pred HHHHhhhhhcccccccCcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHH
Q 011565 54 VAVSGSYSFGTGVGYSSPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIY 133 (483)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~ 133 (483)
++++..+...++.....+.+|.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 34555566677778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhchhHHHHHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----cchhHHHHHHhHHH
Q 011565 134 FSEGALSLDLGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----VATWRTLALVGVIP 209 (483)
Q Consensus 134 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~ 209 (483)
++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++ ..+||+.|++.++.
T Consensus 84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877 45899999998888
Q ss_pred HHHHHH-HhhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHH
Q 011565 210 CAVLLL-GLFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGV 288 (483)
Q Consensus 210 ~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (483)
.++..+ .++++||++++. ++ +++.+.++++.+|+|..+...+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~---~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 208 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRPVD---AP--------------------------------RTRLLTSYKTLFGNSGFNCYLLML 208 (375)
T ss_dssp HHHHHCCCCCSSCCCSTTT---CC--------------------------------CCCTTTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccCCCC---cc--------------------------------cccHHHHHHHHhcCcchHHHHHHH
Confidence 777655 567788875420 00 111233455677777777666666
Q ss_pred HhhhhhhccchhhhHHhHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHH-HHHHHHHHHHHHH
Q 011565 289 GLMVIQQFGGINAIAFYAANIFQTAGLSPSTGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATG-LLLGCLLLAAAFF 367 (483)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 367 (483)
.+..........+.+.|..+..+......+.......++.+++.++.+++.||.+++ +..+... ...+...+.....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~ 286 (375)
T 2gfp_A 209 IGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF 286 (375)
T ss_dssp HHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh
Confidence 666655555555556665554433322334555666777788888888888888762 2222222 2222221111110
Q ss_pred HHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 011565 368 LKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWSSYGT 447 (483)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 447 (483)
. ..+.+......++.+.+.+...+...++..|..| ++|+++.|+.+...++|..++|.+.|.+.+.+.+..
T Consensus 287 ~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~ 357 (375)
T 2gfp_A 287 G--------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSL 357 (375)
T ss_dssp H--------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHH
T ss_pred c--------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccH
Confidence 0 0123334445555666666677888899999998 899999999999999999999999999988554544
Q ss_pred HHHHHHHHHHH
Q 011565 448 FLLYAAVNILG 458 (483)
Q Consensus 448 ~~~~~~~~~~~ 458 (483)
.+...++.+++
T Consensus 358 ~~~~~~~~~~~ 368 (375)
T 2gfp_A 358 GLLMTLMGLLI 368 (375)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.97 E-value=5.3e-32 Score=258.66 Aligned_cols=367 Identities=13% Similarity=0.046 Sum_probs=224.3
Q ss_pred cccCcchHH-HHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHH---HHHHHhhch-hHH
Q 011565 67 GYSSPTQNA-IREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGW---LAIYFSEGA-LSL 141 (483)
Q Consensus 67 ~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~---~~~~~~~~~-~~l 141 (483)
+...|.+|. +++++|+|+.+.|++.+.+.+++.++++++|+++||+|||++++++..+++++. ....+++.. ..+
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI 103 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566665 556799999999999999999999999999999999999999999888776532 212233322 123
Q ss_pred HHHHHHhhhcccccccccchhhhcccCc--cchhhHHhHHHHHHHHHHHHHHHhhc---cchhHHHHHHhHHHHHHHHHH
Q 011565 142 DLGRLATGYGMGIFSYVVPVFTAEIAPK--ELRGALTSANQLLIVIGASTFFIIGT---VATWRTLALVGVIPCAVLLLG 216 (483)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~rg~~~~~~~~~~~iG~~~~~~l~~---~~~wr~~f~~~~~~~~~~~~~ 216 (483)
+..+++.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++ ..+||+.|++.++..++..+.
T Consensus 104 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~ 183 (417)
T 2cfq_A 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVL 183 (417)
T ss_dssp CHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 4566777776665555555555555543 34565566665555666666666555 247999999877766555555
Q ss_pred hhcCCCChhHHHhhCCHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHccCchhhhHHhhhcCCcchHHHHHHhhhhhhc
Q 011565 217 LFLIPESPRWLAKIGKHEEFEAALQKLRGKDADISQEATEIQEYIETLERLPKARLLDLFQKRYLHSVTIGVGLMVIQQF 296 (483)
Q Consensus 217 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (483)
+++.+|++++ +.+.++ ..+. +.++....+++++++++.++...+..........
T Consensus 184 ~~~~~~~~~~---~~~~~~---------~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (417)
T 2cfq_A 184 LFFAKTDAPS---SATVAN---------AVGA--------------NHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYD 237 (417)
T ss_dssp SCSSCCCCSC---SSCSSS---------SSSS--------------CCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCccccc---cccccc---------cccc--------------ccccccHHHHHHHhcCCchhhHHHHHHHHHHHHH
Confidence 4444443210 000000 0000 0011112344566777666554443333322222
Q ss_pred cchhhhHHhHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCC
Q 011565 297 GGINAIAFYAANIFQTAGLSP---STGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGL 373 (483)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (483)
....+.+.|.+..++..+.+. +.......+..+++.++.++++||++||+.+..+..+.+++.+.+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-------- 309 (417)
T 2cfq_A 238 VFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------- 309 (417)
T ss_dssp HHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 222334444433221111112 233344456777889999999999999998877776666554443321
Q ss_pred cccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHH-HHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHH
Q 011565 374 ALESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSL-TTLVNWFGAWAISYTFNFLET-WSSYGTFLLY 451 (483)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~ 451 (483)
.+...+.....+.+.......+..+.++.|.+|++.|+++.++ .+....+|++++|.+.|++.+ .+....+.+.
T Consensus 310 ----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~ 385 (417)
T 2cfq_A 310 ----TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp ----CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence 2222333333333333333334456889999999999999999 488889999999999999888 5556667777
Q ss_pred HHHHHHHHHHHHhcccCCCC
Q 011565 452 AAVNILGIVFITTVVPETKG 471 (483)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~ 471 (483)
+++.+++.++.+...+|+++
T Consensus 386 ~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 386 GLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHHHHHHHhhhcCCCc
Confidence 77777776665555665443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=7.7e-30 Score=251.73 Aligned_cols=393 Identities=13% Similarity=-0.007 Sum_probs=221.8
Q ss_pred HHHhhhc------CchhHHHHHHHHHHHHHHHHHHhHHHhhhhh-chhHHHHHHHHHHHHHHHHHHHhh-chhHHHHHHH
Q 011565 75 AIREDLS------LSLAEYSVFGSILTFGAMIGAITSGPIADFI-GRKGAMRVSSFVCIAGWLAIYFSE-GALSLDLGRL 146 (483)
Q Consensus 75 ~i~~~~~------~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~ 146 (483)
.+.+++| .++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.+++++++ +++.+++.|+
T Consensus 38 ~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (524)
T 2xut_A 38 FLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLF 117 (524)
T ss_dssp HHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 5678899 9999999999999999999999999999999 999999999999999999999999 9999999999
Q ss_pred HhhhcccccccccchhhhcccCccchhhHHhH---HHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHHhhc
Q 011565 147 ATGYGMGIFSYVVPVFTAEIAPKELRGALTSA---NQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLGLFL 219 (483)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~---~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~~~ 219 (483)
++|++.+...+...+++.|++|+++|+++.+. ...+.++|..++|.+++ ..+||+.|++.++..++..+.+++
T Consensus 118 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 118 LIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876666 88899999999998877 468999999988777665554433
Q ss_pred C-CCChhHHHhhCCHHHHHHHHH-HHhcCcccchHHHHHHH-----------------------------HHHHHHccCc
Q 011565 220 I-PESPRWLAKIGKHEEFEAALQ-KLRGKDADISQEATEIQ-----------------------------EYIETLERLP 268 (483)
Q Consensus 220 ~-~e~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~ 268 (483)
. ++.++...++++..+..+... ..+..... .++..... ...+.+ .
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 273 (524)
T 2xut_A 198 GRKRYIHMPPEPKDPHGFLPVIRSALLTKVEG-KGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFV---G 273 (524)
T ss_dssp SSSSCCCCC--------------------CTT-HHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHH---H
T ss_pred hcccccccCCCCccchhHHHHHHHHHhhhhcc-cCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhccc---c
Confidence 2 221100000000000000000 00000000 00000000 000000 0
Q ss_pred hhhhHHh-----------hhcCCcchHHHHHHhhhhhhccchhhhHHhHHHHHHHcCC----CCchHHHHHHHHHHHHHH
Q 011565 269 KARLLDL-----------FQKRYLHSVTIGVGLMVIQQFGGINAIAFYAANIFQTAGL----SPSTGTISYALLQVVVTF 333 (483)
Q Consensus 269 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 333 (483)
+.++++. .++++.........+.....+........+........+. ..+.......++.+++..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (524)
T 2xut_A 274 AGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIP 353 (524)
T ss_dssp TGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGG
T ss_pred cchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHH
Confidence 1111000 0111111111111111111111111111222222222222 112222222233334444
Q ss_pred HHHHHH----hhcCCc----cchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHhhcccccchhhhc
Q 011565 334 FNIIMI----DRAGRK----PLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLVYIGSFSSGMGATPWVLM 405 (483)
Q Consensus 334 ~~g~l~----d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (483)
+.+++. +|.++| +.+..+..+.+++++++.... .........+.+.+....++.+.+.+...+...+++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 430 (524)
T 2xut_A 354 FNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQ---LMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFA 430 (524)
T ss_dssp GTTTC------------CCHHHHHTHHHHHHHHHHTTTTTT---TTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred HHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443332 333322 234444444444444333210 000000112344555566666777777778888999
Q ss_pred cccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh---h---------hHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 011565 406 SEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLETWS---S---------YGTFLLYAAVNILGIVFITTVVPETKGRT 473 (483)
Q Consensus 406 ~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~---~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (483)
.|..|++.|++++|+.++...+|+.++|.+.+.+.+.. + ...+++.+++++++.++.+++.++.++++
T Consensus 431 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 431 YSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp HHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999887621 0 11255666666666665555555554443
Q ss_pred H
Q 011565 474 L 474 (483)
Q Consensus 474 ~ 474 (483)
.
T Consensus 511 ~ 511 (524)
T 2xut_A 511 H 511 (524)
T ss_dssp -
T ss_pred h
Confidence 3
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.51 E-value=5.7e-14 Score=135.39 Aligned_cols=152 Identities=14% Similarity=0.155 Sum_probs=127.5
Q ss_pred cCcchHHHHhh-hcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhh--chhHHHHHHHHHHH-HHHHHHHHh--hchhHHH
Q 011565 69 SSPTQNAIRED-LSLSLAEYSVFGSILTFGAMIGAITSGPIADFI--GRKGAMRVSSFVCI-AGWLAIYFS--EGALSLD 142 (483)
Q Consensus 69 ~~~~~~~i~~~-~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~--Grr~~~~~~~~~~~-~~~~~~~~~--~~~~~l~ 142 (483)
.....|.+.++ +|.++.+.+++.+.+.++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.
T Consensus 271 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (451)
T 1pw4_A 271 ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM 350 (451)
T ss_dssp HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence 44555656655 899999999999999999999999999999999 99999888877766 666666665 3677788
Q ss_pred HHHHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHH-HHHHHHHhhc----cchhHHHHHHhHHHHHHHHHHh
Q 011565 143 LGRLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVI-GASTFFIIGT----VATWRTLALVGVIPCAVLLLGL 217 (483)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~i-G~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~~ 217 (483)
+..++.|++.+...+...+++.|.+|+++|+++.++.+....+ |..+++.+.+ ..||+..|++.++..++..+..
T Consensus 351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 351 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 8889999998888888899999999999999999999999888 9888887766 5589999999888777765554
Q ss_pred hcC
Q 011565 218 FLI 220 (483)
Q Consensus 218 ~~~ 220 (483)
+++
T Consensus 431 ~~~ 433 (451)
T 1pw4_A 431 IVV 433 (451)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.37 E-value=5.3e-13 Score=127.05 Aligned_cols=142 Identities=8% Similarity=0.021 Sum_probs=116.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhhcccccccccchh
Q 011565 83 SLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSEGALSLDLGRLATGYGMGIFSYVVPVF 162 (483)
Q Consensus 83 s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 162 (483)
+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888889999999999999999999999999998888888788888888888888888888877777777889
Q ss_pred hhcccCccchhhHHhH-HHHHHHHHHHHHHHhhc----cchhHHHHHHhHHHHHHHHHH-hhcCCCCh
Q 011565 163 TAEIAPKELRGALTSA-NQLLIVIGASTFFIIGT----VATWRTLALVGVIPCAVLLLG-LFLIPESP 224 (483)
Q Consensus 163 i~~~~~~~~rg~~~~~-~~~~~~iG~~~~~~l~~----~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p 224 (483)
+.|.+|++.|+.+.++ ++....+|..++|.+++ ..|++..|.+.++.+++..+. ++..||++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999998888 47667777777777666 457888888888777775544 55567654
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.35 E-value=6.8e-12 Score=120.32 Aligned_cols=134 Identities=14% Similarity=0.006 Sum_probs=108.6
Q ss_pred chhhhHHhHHHHHHHcCCCCch---HHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCc
Q 011565 298 GINAIAFYAANIFQTAGLSPST---GTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLA 374 (483)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (483)
.........+.+.++.+.+... ......++..++.++.|+++||+|||+.+..+..+.+++.++.....
T Consensus 41 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-------- 112 (438)
T 3o7q_A 41 ANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA-------- 112 (438)
T ss_dssp HHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc--------
Confidence 3345666677777778888644 44555667778999999999999999999999998888887773321
Q ss_pred ccccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011565 375 LESVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLE 440 (483)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~ 440 (483)
...+.+.+.+..++.+.+.+...+...+++.|.+|+++|+.+.++.+....+|..++|.+.+.+.
T Consensus 113 -~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 113 -EIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp -HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred -ccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01456666777777888888888888999999999999999999999999999999999999988
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.30 E-value=3.3e-12 Score=124.44 Aligned_cols=154 Identities=13% Similarity=-0.004 Sum_probs=112.7
Q ss_pred CcchHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhHHHhhhhhchhHHHHHHHHHHHHHHHHHHHhh-----chhHHHHH
Q 011565 70 SPTQNAIREDLSLSLAEYSVFGSILTFGAMIGAITSGPIADFIGRKGAMRVSSFVCIAGWLAIYFSE-----GALSLDLG 144 (483)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~ 144 (483)
....+.+.++.+.+............+...++.++.+++.||+|||+.++.+....+++.+..+... +...++..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 376 (491)
T 4gc0_A 297 LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 376 (491)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3345667888888888888888888899999999999999999999999999888888777665432 11122222
Q ss_pred -HHHhhhcccccccccchhhhcccCccchhhHHhHHHHHHHHHHHHHHHhhc----------cchhHHHHHHhHHHHHHH
Q 011565 145 -RLATGYGMGIFSYVVPVFTAEIAPKELRGALTSANQLLIVIGASTFFIIGT----------VATWRTLALVGVIPCAVL 213 (483)
Q Consensus 145 -r~l~G~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~iG~~~~~~l~~----------~~~wr~~f~~~~~~~~~~ 213 (483)
-+..+++. ...+....+.+|.+|.+.|+.++++......+|..+++.+.. ..++.+.|++.++++++.
T Consensus 377 ~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 455 (491)
T 4gc0_A 377 LFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA 455 (491)
T ss_dssp HHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 22222222 345677789999999999999999998888888877765432 234566788877777765
Q ss_pred H-HHhhcCCCCh
Q 011565 214 L-LGLFLIPESP 224 (483)
Q Consensus 214 ~-~~~~~~~e~p 224 (483)
. +.++++||+.
T Consensus 456 ~i~~~~~~PETk 467 (491)
T 4gc0_A 456 ALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHCCCCT
T ss_pred HHHHHheecCCC
Confidence 4 4578899984
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.30 E-value=7.4e-12 Score=117.40 Aligned_cols=159 Identities=16% Similarity=0.178 Sum_probs=121.9
Q ss_pred hhhHHhHHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhHHHHHHHHHHHHHHHHHhcCCccc
Q 011565 300 NAIAFYAANIFQTAGLSPS---TGTISYALLQVVVTFFNIIMIDRAGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALE 376 (483)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (483)
.......+.+.++.+.+.. .......++..++.+..|+++||+|||+.+..+..+..++..+....
T Consensus 17 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------- 85 (375)
T 2gfp_A 17 TIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT----------- 85 (375)
T ss_dssp HHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-----------
Confidence 3344455666666677764 44455567778999999999999999999999998888888777664
Q ss_pred ccchHHHHHHHHHHHHhhcccccchhhhccccCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHH
Q 011565 377 SVPALTLAGVLVYIGSFSSGMGATPWVLMSEIFPINIKGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVN 455 (483)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~ 455 (483)
.+...+....++.+.+.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+++.+ .++...+.+.++..
T Consensus 86 -~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (375)
T 2gfp_A 86 -SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLC 164 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3455566666677777777778888999999999999999999999999999999999999887 46666666666666
Q ss_pred HHHHHHHHhcccCCC
Q 011565 456 ILGIVFITTVVPETK 470 (483)
Q Consensus 456 ~~~~~~~~~~~~~~~ 470 (483)
++..+...+..||++
T Consensus 165 ~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 165 AGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHCcccC
Confidence 666554555566543
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.28 E-value=3.4e-11 Score=118.33 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=104.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhc-CCccchhhHhHHHHHHHHHHHHHHHHHhcCCccccc-chHHHHHHHHHHHHhhc
Q 011565 318 STGTISYALLQVVVTFFNIIMIDRA-GRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESV-PALTLAGVLVYIGSFSS 395 (483)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 395 (483)
+.......++..++.++.|+++||+ |||+.+..+.++..++.+++... . +...+....++.+.+.+
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~l~g~~~~ 124 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF------------EHSVQGFYTGLFLIALGSG 124 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT------------SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh------------cccHHHHHHHHHHHHHhcc
Confidence 4455566778889999999999999 99999998888888877776653 3 45556666677777777
Q ss_pred ccccchhhhccccCCCccchhhhHH---HHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHH
Q 011565 396 GMGATPWVLMSEIFPINIKGVGGSL---TTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGIVFIT 463 (483)
Q Consensus 396 ~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 463 (483)
...+...+++.|.+|+++|+...+. .+....+|..++|.+.+.+.+ .++...+.+.+++.++..+...
T Consensus 125 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 125 GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 7788889999999999999876666 889999999999999999887 5666666666666555544433
No 14
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.23 E-value=2e-11 Score=118.89 Aligned_cols=139 Identities=17% Similarity=0.184 Sum_probs=108.9
Q ss_pred cCCCC---chHHHHHHHHHHHHHHHHHHHHhh-cCCccchhhHhHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHH
Q 011565 313 AGLSP---STGTISYALLQVVVTFFNIIMIDR-AGRKPLLLFAATGLLLGCLLLAAAFFLKTYGLALESVPALTLAGVLV 388 (483)
Q Consensus 313 ~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (483)
.+.+. +.......++..++.++.|+++|| +|||+.+..+.++..++.+++... .+...+.+..+
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 116 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP------------FGASALFGSII 116 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC------------CSTTHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHH
Confidence 46664 345566677888999999999999 899999999988888887766542 34555666666
Q ss_pred HHHHhhcccccchhhhccccCCCcc--chhhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHH
Q 011565 389 YIGSFSSGMGATPWVLMSEIFPINI--KGVGGSLTTLVNWFGAWAISYTFNFLET-WSSYGTFLLYAAVNILGIVFIT 463 (483)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 463 (483)
+.+.+.+...+...+++.|.+|+++ |+.+.++.+....+|..++|.+.+.+.+ .++...+.+.++..+++.+...
T Consensus 117 l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 117 LIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777888899999999988 7788888999999999999999999988 6666677666655555544443
No 15
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=67.43 E-value=78 Score=29.24 Aligned_cols=26 Identities=0% Similarity=-0.250 Sum_probs=12.3
Q ss_pred hhhhcccCccchhhHHhHHHHHHHHH
Q 011565 161 VFTAEIAPKELRGALTSANQLLIVIG 186 (483)
Q Consensus 161 ~~i~~~~~~~~rg~~~~~~~~~~~iG 186 (483)
......+..++|.+..........+-
T Consensus 147 ~~~~~~l~~~~~~~~~~~~~~~~~~~ 172 (460)
T 3mkt_A 147 QALRSFTDGMSLTKPAMVIGFIGLLL 172 (460)
T ss_dssp HHHTTTTCTTSCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 34444555555555554444444333
No 16
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=65.75 E-value=3 Score=19.67 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=11.5
Q ss_pred hHHHhhhhhchhHH
Q 011565 104 TSGPIADFIGRKGA 117 (483)
Q Consensus 104 ~~G~l~dr~Grr~~ 117 (483)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36889999999865
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=28.06 E-value=1.5e+02 Score=23.89 Aligned_cols=25 Identities=4% Similarity=-0.076 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhchh
Q 011565 91 GSILTFGAMIGAITSGPIADFIGRK 115 (483)
Q Consensus 91 ~s~~~l~~~~~~~~~G~l~dr~Grr 115 (483)
..-|.+|+.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3457788888899999999987644
No 18
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=24.63 E-value=6e+02 Score=27.60 Aligned_cols=17 Identities=6% Similarity=0.188 Sum_probs=9.6
Q ss_pred cchhHHHHHHhHHHHHH
Q 011565 196 VATWRTLALVGVIPCAV 212 (483)
Q Consensus 196 ~~~wr~~f~~~~~~~~~ 212 (483)
..+|+...+..+.+.+.
T Consensus 233 ~~~~~l~lv~l~~~p~~ 249 (1321)
T 4f4c_A 233 THSWQLTLVMLAVTPIQ 249 (1321)
T ss_dssp HHCHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56888766554433333
Done!