BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011566
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 131/285 (45%), Gaps = 50/285 (17%)
Query: 226 TVPNFLAGCSILSDRQP-----AGIAGFGRSSESLPSQLG-----LKKFSYCLLSRKFDD 275
TVP F+ C+ S Q G+AG GR+ +LPSQ +KF+ CL
Sbjct: 130 TVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCL------S 183
Query: 276 APVSSNLVLDTGPGSGDSKT---------PGLSYTPFYKNPVGSS--SAFGE---FYYVG 321
SSN V+ G D T L+YTP NPV +S S GE Y++G
Sbjct: 184 GSTSSNSVIIFG---NDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIG 240
Query: 322 LRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSR 381
++ I + SK V + S L S G GG + + + +T +E +++AV + FI++ S
Sbjct: 241 VKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKE----SA 296
Query: 382 AADVEKKSGLRP---CFDISGKKSVYL----PELILKFKGGAKM-ALPPENYFALVGNEV 433
A ++ + + + P CF S L P + L + + + + N + + V
Sbjct: 297 ARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNV 356
Query: 434 LCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFA 478
+CL + G L +I++G QL++ ++FDLA R GF+
Sbjct: 357 VCLGVVD---GGSNL--RTSIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 131/285 (45%), Gaps = 50/285 (17%)
Query: 226 TVPNFLAGCSILSDRQP-----AGIAGFGRSSESLPSQLG-----LKKFSYCLLSRKFDD 275
TVP F+ C+ S Q G+AG GR+ +LPSQ +KF+ CL
Sbjct: 130 TVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCL------S 183
Query: 276 APVSSNLVLDTGPGSGDSKT---------PGLSYTPFYKNPVGSS--SAFGE---FYYVG 321
SSN V+ G D T L+YTP NPV +S S GE Y++G
Sbjct: 184 GSTSSNSVIIFG---NDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIG 240
Query: 322 LRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSR 381
++ I + SK V + S L S G GG + + + +T +E +++AV + FI++ S
Sbjct: 241 VKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKE----SA 296
Query: 382 AADVEKKSGLRP---CFDISGKKSVYL----PELILKFKGGAKM-ALPPENYFALVGNEV 433
A ++ + + + P CF S L P + L + + + + N + + V
Sbjct: 297 ARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNV 356
Query: 434 LCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFA 478
+CL + G L +I++G QL++ ++FDLA R GF+
Sbjct: 357 VCLGVVD---GGSNL--RTSIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 101/254 (39%), Gaps = 31/254 (12%)
Query: 240 RQPAGIAGFGRSSESLPSQLG-----LKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSK 294
R G+AG S +LP+Q+ +F CL + A + GP
Sbjct: 135 RGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVA------IFGGGPVPWPQF 188
Query: 295 TPGLSYTPFYKNPVGSSSAFGEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSG 354
T + YTP G S A +Y+ R I+VG V +P L GGV++ +
Sbjct: 189 TQSMPYTPLVTK--GGSPA----HYISARSIVVGDTRVPVPEGALA-----TGGVMLSTR 237
Query: 355 STFTFME----GPLFEAVAKEFIRQMGNYSRAAD-VEKKSGLRPCFDI----SGKKSVYL 405
+ + PL +A K Q N + A VE + C+D + +
Sbjct: 238 LPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAV 297
Query: 406 PELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFY 465
P + L GG+ + +N V C+ GR PA+ILG Q+++F
Sbjct: 298 PNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFV 357
Query: 466 LEFDLANDRFGFAK 479
L+FD+ R GF++
Sbjct: 358 LDFDMEKKRLGFSR 371
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 99/254 (38%), Gaps = 31/254 (12%)
Query: 240 RQPAGIAGFGRSSESLPSQLG-----LKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSK 294
R G+AG S +LP+Q+ +F CL + A + GP
Sbjct: 135 RGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVA------IFGGGPVPWPQF 188
Query: 295 TPGLSYTPFYKNPVGSSSAFGEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSG 354
T + YTP G S A +Y+ R I+VG V +P L GGV++ +
Sbjct: 189 TQSMPYTPLVTK--GGSPA----HYISARSIVVGDTRVPVPEGALA-----TGGVMLSTR 237
Query: 355 STFTFME----GPLFEAVAKEFIRQMGN-YSRAADVEKKSGLRPCFDI----SGKKSVYL 405
+ + PL +A K Q N A V + C+D + +
Sbjct: 238 LPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVVAVAPFGVCYDTKTLGNNLGGYAV 297
Query: 406 PELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFY 465
P + L GG+ + +N V C+ GR PA+ILG Q+++F
Sbjct: 298 PNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFV 357
Query: 466 LEFDLANDRFGFAK 479
L+FD+ R GF++
Sbjct: 358 LDFDMEKKRLGFSR 371
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 101/254 (39%), Gaps = 31/254 (12%)
Query: 240 RQPAGIAGFGRSSESLPSQLGL-----KKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSK 294
R G+AG S +LPSQ+ KF CL + A + GP
Sbjct: 137 RGSTGVAGLAGSGLALPSQVASAQKVPNKFLLCLPTGGPGVA------IFGGGPLPWPQF 190
Query: 295 TPGLSYTPFYKNPVGSSSAFGEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSG 354
T + YTP G S A +Y+ R I V + V I L GGV++ +
Sbjct: 191 TQSMDYTPLVAK--GGSPA----HYISARSIKVENTRVPISERALA-----TGGVMLSTR 239
Query: 355 STFTFMEG----PLFEAVAKEFIRQMGNYSRAAD-VEKKSGLRPCFDI----SGKKSVYL 405
+ + PL +A K Q N + A V+ + C+D + ++
Sbjct: 240 LPYVLLRRDVYRPLVDAFTKALAAQPANGAPVARAVKPVAPFELCYDTKTLGNNPGGYWV 299
Query: 406 PELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFY 465
P ++L+ GG+ A+ +N V C+ G PA+ILG Q+++F
Sbjct: 300 PNVLLELDGGSDWAMTGKNSMVDVKPGTACVAFVEMKGVDAGDGSAPAVILGGAQMEDFV 359
Query: 466 LEFDLANDRFGFAK 479
L+FD+ R GF +
Sbjct: 360 LDFDMEKKRLGFLR 373
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 87/383 (22%), Positives = 141/383 (36%), Gaps = 84/383 (21%)
Query: 108 LSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIG 167
+S GTPPQ + +FDTGSS +W P +
Sbjct: 18 ISIGTPPQ-NFLVLFDTGSSNLWVPS--------------------------------VY 44
Query: 168 CQNPKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTV 227
CQ+ C+ S + + T ++ LQYG G G +TL S V
Sbjct: 45 CQSQACT--------SHSRFNPSESSTYSTNGQTFSLQYGSGSLTGFFGYDTLTVQSIQV 96
Query: 228 PNFLAGCSILSDRQPA---------GIAGFGRSSESLPSQLGLKKFSYCLLSRKFDDAPV 278
PN G LS+ +P GI G + S+ + ++ +PV
Sbjct: 97 PNQEFG---LSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQ---GMVQEGALTSPV 150
Query: 279 SSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYY-VGLRQIIVGSKHVKIPYS 337
S + + SG + G + Y + + E Y+ +G+ + ++G +
Sbjct: 151 FSVYLSNQQGSSGGAVVFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQ------- 203
Query: 338 YLVPGSDGNG-GVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFD 396
G G IVD+G++ V ++++ + + A + E L C
Sbjct: 204 --ASGWCSEGCQAIVDTGTSLL--------TVPQQYMSALLQATGAQEDEYGQFLVNCNS 253
Query: 397 ISGKKSVYLPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIIL 456
I LP L G + LPP +Y ++ N C + G+ P IL
Sbjct: 254 IQN-----LPSLTFIING-VEFPLPPSSY--ILSNNGYCTVGVEPTYLSSQNGQ-PLWIL 304
Query: 457 GDFQLQNFYLEFDLANDRFGFAK 479
GD L+++Y +DL N+R GFA
Sbjct: 305 GDVFLRSYYSVYDLGNNRVGFAT 327
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 98/433 (22%), Positives = 161/433 (37%), Gaps = 92/433 (21%)
Query: 76 PKTKDSNIGSNYSNSLIKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTS 135
P D + G +++N +TPL P + D + +W C
Sbjct: 13 PVQNDGSTGLHWANLQKRTPL-------------------MQVPVLVDLNGNHLWVNCEQ 53
Query: 136 RYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNVESRCKGCSPRNKTC 195
+Y P ++ R+++ Q + C P S GC TC
Sbjct: 54 QYSSKTYQAPFCHSTQC-----SRANTHQCLSC--PAASR----------PGC--HKNTC 94
Query: 196 PLACPSYLLQY-GLGFTAGLLL-------SETLRFPSKTVPNFLAGC--SILSD----RQ 241
L + + Q GLG +L S P TVP FL C S L R
Sbjct: 95 GLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRN 154
Query: 242 PAGIAGFGRSSESLPSQL----GLKK-FSYCLLSRK--------FDDAPVSSNLVLDTGP 288
G+AG G + SLP+QL GL++ F+ CL SR F DAP + +
Sbjct: 155 TQGVAGLGHAPISLPNQLASHFGLQRQFTTCL-SRYPTSKGAIIFGDAPNNMRQFQN--- 210
Query: 289 GSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGLRQIIVGSKHVKIPYSYL---VPGSDG 345
L++TP G Y V + I + ++H P + + + GS
Sbjct: 211 ---QDIFHDLAFTPLTITLQGE-------YNVRVNSIRI-NQHSVFPLNKISSTIVGST- 258
Query: 346 NGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSVYL 405
+GG ++ + + ++ +++A + F +Q+ + A V+ + CF+ + +
Sbjct: 259 SGGTMISTSTPHMVLQQSVYQAFTQVFAQQL---PKQAQVKSVAPFGLCFNSNKINAYPS 315
Query: 406 PELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFY 465
+L++ G + E+ V CL + A I LG QL+
Sbjct: 316 VDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRA-----EITLGARQLEENL 370
Query: 466 LEFDLANDRFGFA 478
+ FDLA R GF+
Sbjct: 371 VVFDLARSRVGFS 383
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 350 IVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSVYLPELI 409
IVD+G++ M GP+ E +R++ A + + + PC +S LP +
Sbjct: 124 IVDTGTSL--MVGPVDE------VRELQKAIGAVPLIQGEYMIPCEKVS-----TLPAIT 170
Query: 410 LKFKGGAKMALPPENYFALV--GNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLE 467
LK GG L PE+Y V + LCL F P GP ILGD + +Y
Sbjct: 171 LKL-GGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPP--SGPLWILGDVFIGRYYTV 227
Query: 468 FDLANDRFGFAK 479
FD N+R GFA+
Sbjct: 228 FDRDNNRVGFAE 239
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 93/405 (22%), Positives = 150/405 (37%), Gaps = 98/405 (24%)
Query: 93 KTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRI 152
K PL + Y ++S G+PPQ T IFDTGSS +W P
Sbjct: 14 KEPLINYLDMEYFGTISIGSPPQNFT-VIFDTGSSNLWVPS------------------- 53
Query: 153 PAFIPKRSSSSQLIGCQNPKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTA 212
+ C +P C SR + + P S+ +QYG G +
Sbjct: 54 -------------VYCTSPAC------KTHSRFQPSQSSTYSQP--GQSFSIQYGTGSLS 92
Query: 213 GLLLSETLRFPSKTVPNFLAGCSILS------DRQPAGIAGFGRSSESLPSQLGLKKFSY 266
G++ ++ + TV G S+ D + GI G G S ++ G+
Sbjct: 93 GIIGADQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGYPSLAVG---GVTPVFD 149
Query: 267 CLLSRKFDDAPVSSNLVLDTGPGSGDSK-----------TPGLSYTPFYKNPVGSSSAFG 315
++++ D P+ S + G S+ + L++ P K
Sbjct: 150 NMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWVPVTKQ--------- 200
Query: 316 EFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQ 375
++ + L I VG ++ S+G IVD+G+ + + GP + I+Q
Sbjct: 201 AYWQIALDNIQVGGT--------VMFCSEGC-QAIVDTGT--SLITGP------SDKIKQ 243
Query: 376 MGNYSRAADVEKKSGLRPCFDISGKKSVYLPELILKFKGGAKMALPPENYFAL--VGNEV 433
+ N AA V+ + + C +++ +P++ G L P Y L V
Sbjct: 244 LQNAIGAAPVDGEYAVE-CANLN-----VMPDVTFTIN-GVPYTLSPTAYTLLDFVDGMQ 296
Query: 434 LCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFA 478
C F P GP ILGD ++ FY FD N+R G A
Sbjct: 297 FCSSGFQGLDIHPP--AGPLWILGDVFIRQFYSVFDRGNNRVGLA 339
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 414 GGAKMALPPENYFALVGN--EVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLA 471
GG K AL PE Y VG C+ FT P RGP ILGD + ++ FD
Sbjct: 411 GGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPP--RGPLWILGDVFMGPYHTVFDYG 468
Query: 472 NDRFGFAK 479
R GFAK
Sbjct: 469 KLRIGFAK 476
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 107 SLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDC 142
+ GTPPQ T IFDTGSS +W P Y + C
Sbjct: 57 EIGVGTPPQKFT-VIFDTGSSNLWVPSAKCYFSIAC 91
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 26/141 (18%)
Query: 346 NGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSVYL 405
N V++DSG+T T+++ L + + K F N D S ++SG
Sbjct: 212 NVDVLLDSGTTITYLQQDLADQIIKAF-----NGKLTQDSNGNSFYEVDCNLSG------ 260
Query: 406 PELILKFKGGAKMALPPENYFA-LVGNE----VLCLILFTDNAAGPALGRGPAIILGDFQ 460
+++ F AK+++P + A L G++ C +LF N A ILGD
Sbjct: 261 -DVVFNFSKNAKISVPASEFAASLQGDDGQPYDKCQLLFDVNDAN---------ILGDNF 310
Query: 461 LQNFYLEFDLANDRFGFAKQK 481
L++ Y+ +DL ++ A+ K
Sbjct: 311 LRSAYIVYDLDDNEISLAQVK 331
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 26/141 (18%)
Query: 346 NGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSVYL 405
N V++DSG+T T+++ L + + K F N D S ++SG
Sbjct: 212 NVDVLLDSGTTITYLQQDLADQIIKAF-----NGKLTQDSNGNSFYEVDCNLSG------ 260
Query: 406 PELILKFKGGAKMALPPENYFALVGNE-----VLCLILFTDNAAGPALGRGPAIILGDFQ 460
+++ F AK+++P ++ A + C +LF N A ILGD
Sbjct: 261 -DVVFNFSKNAKISVPASDFAASTQGDDGQPYDKCQLLFDVNKAN---------ILGDNF 310
Query: 461 LQNFYLEFDLANDRFGFAKQK 481
L++ Y+ +DL ++ A+ K
Sbjct: 311 LRSAYIVYDLDDNEISIAQVK 331
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 23/136 (16%)
Query: 346 NGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSVYL 405
N V++DSG+T T+ ++ A +F R +G D + P D+SG
Sbjct: 212 NADVVLDSGTTITYFS----QSTADKFARIVG---ATWDSRNEIYRLPSCDLSG------ 258
Query: 406 PELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFY 465
+ + F G K+ +P + +C + R A ILGD L+ Y
Sbjct: 259 -DAVFNFDQGVKITVPLSELILKDSDSSICYF---------GISRNDANILGDNFLRRAY 308
Query: 466 LEFDLANDRFGFAKQK 481
+ +DL + A+ K
Sbjct: 309 IVYDLDDKTISLAQVK 324
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 84/405 (20%), Positives = 139/405 (34%), Gaps = 101/405 (24%)
Query: 94 TPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIP 153
PL+ + Y ++ GTPPQ + I DTGSS +W P
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQ-NFKVILDTGSSNLWVPSNE------------------ 45
Query: 154 AFIPKRSSSSQLIGCQNPKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTAG 213
C + C + N T + +QYG G G
Sbjct: 46 --------------CGSLAC--FLHSKYDHEASSSYKANGT------EFAIQYGTGSLEG 83
Query: 214 LLLSETLRFPSKTVP--NFLAGCS----ILSDRQPAGIAGFGRSSESLP----------- 256
+ +TL T+P +F S + + GI G G + S+
Sbjct: 84 YISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQ 143
Query: 257 -SQLGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPG-LSYTPFYKNPVGSSSAF 314
L K+F++ L D + + N T G +SK G +++ P +
Sbjct: 144 QDLLDEKRFAFYL----GDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKA------- 192
Query: 315 GEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIR 374
++ V I +G ++ ++ + G +D+G++ + L E +
Sbjct: 193 --YWEVKFEGIGLGDEYAELE----------SHGAAIDTGTSLITLPSGLAEMIN----- 235
Query: 375 QMGNYSRAADVEKKSGLRPCFDISGKKSVYLPELILKFKGGAKMALPPENYFALVGNEVL 434
A++ K G + + LP+LI F G + P +Y V +
Sbjct: 236 --------AEIGAKKGWTGQYTLDCNTRDNLPDLIFNFNG-YNFTIGPYDYTLEVSGSCI 286
Query: 435 CLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAK 479
I D P GP I+GD L+ +Y +DL N+ G AK
Sbjct: 287 SAITPMDFPE-PV---GPLAIVGDAFLRKYYSIYDLGNNAVGLAK 327
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 83/405 (20%), Positives = 139/405 (34%), Gaps = 101/405 (24%)
Query: 94 TPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIP 153
PL+ + Y ++ GTPPQ + I DTGSS +W P
Sbjct: 5 VPLTNYLNAQYYTDITLGTPPQ-NFKVILDTGSSNLWVPSNE------------------ 45
Query: 154 AFIPKRSSSSQLIGCQNPKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTAG 213
C + C + N T + +QYG G G
Sbjct: 46 --------------CGSLAC--FLHSKYDHEASSSYKANGT------EFAIQYGTGSLEG 83
Query: 214 LLLSETLRFPSKTVP--NFLAGCS----ILSDRQPAGIAGFGRSSESLP----------- 256
+ +TL T+P +F S + + GI G G + S+
Sbjct: 84 YISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQ 143
Query: 257 -SQLGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPG-LSYTPFYKNPVGSSSAF 314
L K+F++ L D + + N T G +SK G +++ P +
Sbjct: 144 QDLLDEKRFAFYL----GDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKA------- 192
Query: 315 GEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIR 374
++ V I +G ++ ++ + G +D+G++ + L E +
Sbjct: 193 --YWEVKFEGIGLGDEYAELE----------SHGAAIDTGTSLITLPSGLAEMIN----- 235
Query: 375 QMGNYSRAADVEKKSGLRPCFDISGKKSVYLPELILKFKGGAKMALPPENYFALVGNEVL 434
A++ K G + + LP+LI F G + P +Y V +
Sbjct: 236 --------AEIGAKKGWTGQYTLDCNTRDNLPDLIFNFNG-YNFTIGPYDYTLEVSGSCI 286
Query: 435 CLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAK 479
I D P GP I+GD L+ +Y +D+ N+ G AK
Sbjct: 287 SAITPMDFPE-PV---GPLAIVGDAFLRKYYSIYDIGNNAVGLAK 327
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 84/404 (20%), Positives = 139/404 (34%), Gaps = 101/404 (25%)
Query: 95 PLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPA 154
PL+ + Y ++ GTPPQ + I DTGSS +W P
Sbjct: 6 PLTNYLNAQYYTDITLGTPPQ-NFKVILDTGSSNLWVPSNE------------------- 45
Query: 155 FIPKRSSSSQLIGCQNPKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGL 214
C + C + N T + +QYG G G
Sbjct: 46 -------------CGSLAC--FLHSKYDHEASSSYKANGT------EFAIQYGTGSLEGY 84
Query: 215 LLSETLRFPSKTVP--NFLAGCS----ILSDRQPAGIAGFGRSSESLP------------ 256
+ +TL T+P +F S + + GI G G + S+
Sbjct: 85 ISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQ 144
Query: 257 SQLGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPG-LSYTPFYKNPVGSSSAFG 315
L K+F++ L D + + N T G +SK G +++ P +
Sbjct: 145 DLLDEKRFAFYL----GDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKA-------- 192
Query: 316 EFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQ 375
++ V I +G ++ ++ + G +D+G++ + L E +
Sbjct: 193 -YWEVKFEGIGLGDEYAELE----------SHGAAIDTGTSLITLPSGLAEMIN------ 235
Query: 376 MGNYSRAADVEKKSGLRPCFDISGKKSVYLPELILKFKGGAKMALPPENYFALVGNEVLC 435
A++ K G + + LP+LI F G + P +Y V +
Sbjct: 236 -------AEIGAKKGSTGQYTLDCNTRDNLPDLIFNFNG-YNFTIGPYDYTLEVSGSCIS 287
Query: 436 LILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAK 479
I D P GP I+GD L+ +Y +DL N+ G AK
Sbjct: 288 AITPMDFPE-PV---GPLAIVGDAFLRKYYSIYDLGNNAVGLAK 327
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 26/143 (18%)
Query: 344 DGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSV 403
+GN V++DSG+T T+++ + + + F ++ K G F ++ ++
Sbjct: 209 NGNIDVLLDSGTTITYLQQDVAQDIIDAFQAEL----------KSDGQGHTFYVTDCQTS 258
Query: 404 YLPELILKFKGGAKMALPPENYFALVGNEV-----LCLILFTDNAAGPALGRGPAIILGD 458
+ F AK+++P + A + C +L LG A ILGD
Sbjct: 259 GTVDF--NFDNNAKISVPASEFTAPLSYANGQPYPKCQLL---------LGISDANILGD 307
Query: 459 FQLQNFYLEFDLANDRFGFAKQK 481
L++ YL +DL +D+ A+ K
Sbjct: 308 NFLRSAYLVYDLDDDKISLAQVK 330
>pdb|1B5F|B Chain B, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|D Chain D, Native Cardosin A From Cynara Cardunculus L
Length = 87
Score = 35.8 bits (81), Expect = 0.058, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 414 GGAKMALPPENYFALVGN--EVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLA 471
GG K L PE Y VG C+ FT A A GP ILGD ++ ++ FD
Sbjct: 21 GGKKFGLTPEQYILKVGKGEATQCISGFT---AMDATLLGPLWILGDVFMRPYHTVFDYG 77
Query: 472 NDRFGFAK 479
N GFA+
Sbjct: 78 NLLVGFAE 85
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 104 YSISLSFGTPPQASTPFIFDTGSSLVWFP---CTSRYRCVDCNFPNVDPSRIPAF 155
Y+I +S GTP Q +FDTGSS W P CT CV F DPS F
Sbjct: 20 YAIPVSIGTPGQ-DFLLLFDTGSSDTWVPHKGCTKSEGCVGSRF--FDPSASSTF 71
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 90/396 (22%), Positives = 136/396 (34%), Gaps = 88/396 (22%)
Query: 93 KTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRI 152
+ PL+ + Y + GTPPQ T +FDTGSS +W P V N DP +
Sbjct: 2 REPLTSYLDSQYFGKIYIGTPPQEFT-VVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKS 60
Query: 153 PAFIPKRSSSSQLIGCQNPKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTA 212
F RN PL+ + YG G
Sbjct: 61 STF-----------------------------------RNLGKPLS-----IHYGTGSME 80
Query: 213 GLLLSETLRFPSKTVPNFLAGCSILSDRQPAGIAGFGRSSESLPSQLGL------KKFSY 266
G L +T+ + PN G LS QP + + LGL ++S
Sbjct: 81 GFLGYDTVTVSNIVDPNQTVG---LSTEQPGEVFTYSE----FDGILGLAYPSLASEYSV 133
Query: 267 CLLSRKFDDAPVSSNL--VLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGLRQ 324
+ D V+ +L V G G T G +Y + + Y+ Q
Sbjct: 134 PVFDNMMDRHLVARDLFSVYMDRNGQGSMLTLGAIDPSYYTGSLHWVPVTLQQYW----Q 189
Query: 325 IIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAAD 384
V S + V G I+D+G++ F GP + + +
Sbjct: 190 FTVDSVTINGVAVACVGGCQA----ILDTGTSVLF--GPSSDILKIQM--------AIGA 235
Query: 385 VEKKSGLRPCFDISGKKSVYLPELILKFKGGAKMALPPENYFALVGNEVLCLILFT-DNA 443
E + G FD++ +P ++ + G L P Y + ++ C F DN
Sbjct: 236 TENRYGE---FDVNCGNLRSMPTVVFEIN-GRDYPLSPSAYTS--KDQGFCTSGFQGDNN 289
Query: 444 AGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAK 479
+ ILGD ++ +Y FD AN+R G AK
Sbjct: 290 S-------ELWILGDVFIREYYSVFDRANNRVGLAK 318
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 405 LPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNF 464
LP++ G K LPP Y + G++ C ++G I GD L+N+
Sbjct: 253 LPDITFTING-VKQPLPPSAY--IEGDQAFCTSGL--GSSGVPSNTSELWIFGDVFLRNY 307
Query: 465 YLEFDLANDRFGFA 478
Y +D N++ GFA
Sbjct: 308 YTIYDRTNNKVGFA 321
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 13/57 (22%)
Query: 108 LSFGTPPQASTPFIFDTGSSLVWFPCT--SRYRCVDCNFPNVDPSRIPAFIPKRSSS 162
+S GTPP+ S IFDTGSS +W + S C + N F P++SS+
Sbjct: 18 ISIGTPPE-SFKVIFDTGSSNLWVSSSHCSAQACSNHN----------KFKPRQSST 63
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 79 KDSNIGSNYSNSLIKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFP---CTS 135
K +G+ S+ ++ + YG + GTPPQ + +FDTGSS VW P C+
Sbjct: 42 KRLTLGNTTSSVILTNYMDTQYYG----EIGIGTPPQ-TFKVVFDTGSSNVWVPSSKCSR 96
Query: 136 RYR-CV 140
Y CV
Sbjct: 97 LYTACV 102
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 451 GPAIILGDFQLQNFYLEFDLANDRFGFA 478
GP LG ++ FY EFD N+R GFA
Sbjct: 353 GPTWALGATFIRKFYTEFDRRNNRIGFA 380
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 451 GPAIILGDFQLQNFYLEFDLANDRFGFA 478
GP +LG ++ FY EFD N+R GFA
Sbjct: 305 GPVWVLGATFIRKFYTEFDRHNNRIGFA 332
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 104 YSISLSFGTPPQASTPFIFDTGSSLVWFPCT 134
Y + GTPPQ + IFDTGS+ +W P T
Sbjct: 17 YYGEIGIGTPPQ-TFKVIFDTGSANLWVPST 46
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 82 NIGSNYSNSLIKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFP---CTSRYR 138
+G+ S+ ++ + YG + GTPPQ + +FDTGSS VW P C+ Y
Sbjct: 2 TLGNTTSSVILTNYMDTQYYG----EIGIGTPPQ-TFKVVFDTGSSNVWVPSSKCSRLYT 56
Query: 139 -CV 140
CV
Sbjct: 57 ACV 59
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 451 GPAIILGDFQLQNFYLEFDLANDRFGFA 478
GP LG ++ FY EFD N+R GFA
Sbjct: 310 GPTWALGATFIRKFYTEFDRRNNRIGFA 337
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 82 NIGSNYSNSLIKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFP---CTSRYR 138
+G+ S+ ++ + YG + GTPPQ + +FDTGSS VW P C+ Y
Sbjct: 2 TLGNTTSSVILTNYMDTQYYG----EIGIGTPPQ-TFKVVFDTGSSNVWVPSSKCSRLYT 56
Query: 139 -CV 140
CV
Sbjct: 57 ACV 59
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 451 GPAIILGDFQLQNFYLEFDLANDRFGFA 478
GP LG ++ FY EFD N+R GFA
Sbjct: 310 GPTWALGATFIRKFYTEFDRRNNRIGFA 337
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 82 NIGSNYSNSLIKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFP---CTSRYR 138
+G+ S+ ++ + YG + GTPPQ + +FDTGSS VW P C+ Y
Sbjct: 2 TLGNTTSSVILTNYMDTQYYG----EIGIGTPPQ-TFKVVFDTGSSNVWVPSSKCSRLYT 56
Query: 139 -CV 140
CV
Sbjct: 57 ACV 59
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 451 GPAIILGDFQLQNFYLEFDLANDRFGFA 478
GP LG ++ FY EFD N+R GFA
Sbjct: 305 GPTWALGATFIRKFYTEFDRRNNRIGFA 332
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 4/34 (11%)
Query: 108 LSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVD 141
+ GTPPQ T IFDTGSS++W P + +C++
Sbjct: 19 IGIGTPPQKFT-VIFDTGSSVLWVPSS---KCIN 48
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 82 NIGSNYSNSLIKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFP---CTSRYR 138
+G+ S+ ++ + YG + GTPPQ + +FDTGSS VW P C+ Y
Sbjct: 2 TLGNTTSSVILTNYMDTQYYG----EIGIGTPPQ-TFKVVFDTGSSNVWVPSSKCSRLYT 56
Query: 139 -CV 140
CV
Sbjct: 57 ACV 59
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 84 GSNYSNSLIKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFP---CTSRYR-C 139
G+ S+ ++ + YG + GTPPQ + +FDTGSS VW P C+ Y C
Sbjct: 1 GNTTSSVILTNYMDTQYYG----EIGIGTPPQ-TFKVVFDTGSSNVWVPSSKCSRLYTAC 55
Query: 140 V 140
V
Sbjct: 56 V 56
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 451 GPAIILGDFQLQNFYLEFDLANDRFGFA 478
GP LG ++ FY EFD N+R GFA
Sbjct: 307 GPTWALGATFIRKFYTEFDRRNNRIGFA 334
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 104 YSISLSFGTPPQASTPFIFDTGSSLVWFP---CTSRYRCVDCNFPNVDPSRIPAF 155
Y+I +S GTP Q +FDTGSS W P C + CV F DPS F
Sbjct: 20 YAIPVSIGTPGQ-DFYLLFDTGSSDTWVPHKGCDNSEGCVGKRF--FDPSSSSTF 71
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 71 KTKTKPKTKDSNIGSNY---SNSLI-KTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGS 126
K K KT N S Y + +LI PL + Y ++ GTP Q T IFDTGS
Sbjct: 21 KLKDFLKTHKHNPASKYFPEAAALIGDEPLENYLDTEYFGTIGIGTPAQDFT-VIFDTGS 79
Query: 127 SLVWFPCT--SRYRCVDCNFPNVDPS 150
S +W P S C D N N D S
Sbjct: 80 SNLWVPSVYCSSLACSDHNQFNPDDS 105
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 71 KTKTKPKTKDSNIGSNY---SNSLI-KTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGS 126
K K KT N S Y + +LI PL + Y ++ GTP Q T IFDTGS
Sbjct: 21 KLKDFLKTHKHNPASKYFPEAAALIGDEPLENYLDTEYFGTIGIGTPAQDFT-VIFDTGS 79
Query: 127 SLVWFPCT--SRYRCVDCNFPNVDPS 150
S +W P S C D N N D S
Sbjct: 80 SNLWVPSVYCSSLACSDHNQFNPDDS 105
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 453 AIILGDFQLQNFYLEFDLANDRFGFAKQKCA 483
A+++G ++ FY+ FD A R GFA CA
Sbjct: 327 ALVIGATVMEGFYVIFDRAQKRVGFAASPCA 357
>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|B Chain B, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|D Chain D, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 176
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 451 GPAIILGDFQLQNFYLEFDLANDRFGFA 478
GP LG ++ FY EFD N+R GFA
Sbjct: 140 GPTWALGATFIRKFYTEFDRRNNRIGFA 167
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 86 NYSNSLIKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFP---CTSRYR-CV 140
N ++S+I T Y G + GTPPQ + +FDTGSS VW P C+ Y CV
Sbjct: 1 NTTSSVILTNYMDTQYYG---EIGIGTPPQ-TFKVVFDTGSSNVWVPSSKCSRLYTACV 55
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 451 GPAIILGDFQLQNFYLEFDLANDRFGFA 478
GP LG ++ FY EFD N+R GFA
Sbjct: 306 GPTWALGATFIRKFYTEFDRRNNRIGFA 333
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 451 GPAIILGDFQLQNFYLEFDLANDRFGFA 478
GP LG ++ FY EFD N+R GFA
Sbjct: 303 GPTWALGATFIRKFYTEFDRRNNRIGFA 330
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 88 SNSLIKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFP---CTSRYR-CV 140
S+ ++ + YG + GTPPQ + +FDTGSS VW P C+ Y CV
Sbjct: 1 SSVILTNYMDTQYYG----EIGIGTPPQ-TFKVVFDTGSSNVWVPSSKCSRLYTACV 52
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 97
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 91 LIKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFP 132
++K + YG + GTPPQ T +FDTGSS +W P
Sbjct: 6 VLKNYMDAQYYG----EIGIGTPPQCFT-VVFDTGSSNLWVP 42
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 107 SLSFGTPPQASTPFIFDTGSSLVWFPCT--SRYRCVDCNFPNVDPSR 151
++ GTP Q T IFDTGSS +W P S C D N N D S
Sbjct: 17 TIGIGTPAQDFT-VIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSS 62
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 107 SLSFGTPPQASTPFIFDTGSSLVWFPCT--SRYRCVDCNFPNVDPSR 151
++ GTP Q T IFDTGSS +W P S C D N N D S
Sbjct: 17 TIGIGTPAQDFT-VIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSS 62
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 107 SLSFGTPPQASTPFIFDTGSSLVWFPCT--SRYRCVDCNFPNVDPSR 151
++ GTP Q T IFDTGSS +W P S C D N N D S
Sbjct: 17 TIGIGTPAQDFT-VIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSS 62
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 107 SLSFGTPPQASTPFIFDTGSSLVWFPCT--SRYRCVDCNFPNVDPSR 151
++ GTP Q T IFDTGSS +W P S C D N N D S
Sbjct: 17 TIGIGTPAQDFT-VIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSS 62
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 107 SLSFGTPPQASTPFIFDTGSSLVWFPCT--SRYRCVDCNFPNVDPSR 151
++ GTP Q T IFDTGSS +W P S C D N N D S
Sbjct: 17 TIGIGTPAQDFT-VIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSS 62
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 405 LPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNF 464
LP+++ G + +PP Y ++ +E C+ F G ILGD ++ +
Sbjct: 255 LPDIVFTING-VQYPVPPSAY--ILQSEGSCISGF--QGMNVPTESGELWILGDVFIRQY 309
Query: 465 YLEFDLANDRFGFA 478
+ FD AN++ G A
Sbjct: 310 FTVFDRANNQVGLA 323
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 405 LPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNF 464
LP+++ G + +PP Y ++ +E C+ F G ILGD ++ +
Sbjct: 255 LPDIVFTING-VQYPVPPSAY--ILQSEGSCISGF--QGMNLPTESGELWILGDVFIRQY 309
Query: 465 YLEFDLANDRFGFA 478
+ FD AN++ G A
Sbjct: 310 FTVFDRANNQVGLA 323
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 94 TPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFP 132
PL+ + Y + GTPPQ T +FDTGSS W P
Sbjct: 6 VPLTNYLDSQYFGKIYLGTPPQEFT-VLFDTGSSDFWVP 43
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 94 TPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFP 132
PL+ + Y + GTPPQ T +FDTGSS W P
Sbjct: 6 VPLTNYLDSQYFGKIYLGTPPQEFT-VLFDTGSSDFWVP 43
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 78 TKDSNIGSNYSNSLIKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFP---CT 134
TK S +GS + N +K +V S+G G Q F+F T SS VW P CT
Sbjct: 117 TKKSYLGSEFDNVELKDLANVLSFG----EAKLGDNGQKFN-FLFHTASSNVWVPSIKCT 171
Query: 135 SR 136
S
Sbjct: 172 SE 173
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 104 YSISLSFGTPPQASTPFIFDTGSSLVW 130
Y S+S GTP Q P FDTGSS +W
Sbjct: 17 YITSVSIGTPAQV-LPLDFDTGSSDLW 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,202,626
Number of Sequences: 62578
Number of extensions: 604960
Number of successful extensions: 1307
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1219
Number of HSP's gapped (non-prelim): 98
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)