Query 011566
Match_columns 483
No_of_seqs 214 out of 1574
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 02:47:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011566.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011566hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 4.4E-66 9.6E-71 530.3 43.7 395 27-483 20-429 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 7.2E-57 1.6E-61 464.3 34.3 310 91-483 108-449 (482)
3 KOG1339 Aspartyl protease [Pos 100.0 1.8E-55 3.8E-60 449.6 34.5 342 93-483 36-397 (398)
4 cd05490 Cathepsin_D2 Cathepsin 100.0 6.9E-55 1.5E-59 435.0 28.1 304 99-479 2-325 (325)
5 cd05478 pepsin_A Pepsin A, asp 100.0 4.1E-55 8.9E-60 435.0 26.2 298 95-479 2-317 (317)
6 cd06098 phytepsin Phytepsin, a 100.0 2.2E-54 4.7E-59 429.5 28.4 294 94-479 1-317 (317)
7 cd05487 renin_like Renin stimu 100.0 2.6E-54 5.6E-59 430.8 27.8 305 97-480 2-326 (326)
8 cd05472 cnd41_like Chloroplast 100.0 1.2E-53 2.6E-58 421.2 32.1 290 103-482 1-299 (299)
9 cd05486 Cathespin_E Cathepsin 100.0 1.8E-54 3.8E-59 430.3 25.8 294 104-479 1-316 (316)
10 cd05488 Proteinase_A_fungi Fun 100.0 5.3E-54 1.2E-58 427.4 27.4 300 94-479 1-320 (320)
11 cd05477 gastricsin Gastricsins 100.0 1.2E-53 2.6E-58 424.8 27.4 300 101-480 1-318 (318)
12 cd05485 Cathepsin_D_like Cathe 100.0 2.2E-53 4.7E-58 424.3 27.2 308 94-479 2-329 (329)
13 cd06096 Plasmepsin_5 Plasmepsi 100.0 8.8E-53 1.9E-57 419.6 29.6 290 102-483 2-326 (326)
14 PTZ00147 plasmepsin-1; Provisi 100.0 2.1E-52 4.5E-57 428.0 27.3 302 91-481 127-450 (453)
15 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.2E-51 2.7E-56 421.4 27.8 302 91-481 126-449 (450)
16 cd05473 beta_secretase_like Be 100.0 4.3E-51 9.2E-56 413.6 29.4 314 102-483 2-348 (364)
17 cd05489 xylanase_inhibitor_I_l 100.0 1.2E-50 2.6E-55 407.4 32.1 326 110-480 2-361 (362)
18 cd05476 pepsin_A_like_plant Ch 100.0 3.4E-49 7.4E-54 382.6 28.0 256 103-482 1-265 (265)
19 cd05475 nucellin_like Nucellin 100.0 1.9E-48 4.2E-53 378.7 27.8 253 102-482 1-273 (273)
20 cd06097 Aspergillopepsin_like 100.0 1.4E-48 3E-53 381.1 21.6 258 104-479 1-278 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 2.6E-47 5.7E-52 375.5 22.3 272 103-480 2-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 2.1E-47 4.6E-52 379.9 14.6 296 103-480 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 3E-43 6.4E-48 344.2 24.3 264 104-479 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 8.4E-29 1.8E-33 221.4 9.7 152 104-287 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 5.2E-26 1.1E-30 203.2 15.0 157 317-479 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 8.5E-22 1.8E-26 164.3 10.1 102 106-248 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.1 6.1E-06 1.3E-10 66.3 5.5 93 102-250 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.7 0.0047 1E-07 52.1 6.4 98 97-250 5-103 (121)
29 PF13650 Asp_protease_2: Aspar 95.9 0.024 5.2E-07 44.5 6.3 38 211-249 52-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.2 0.08 1.7E-06 44.8 7.3 25 453-477 100-124 (124)
31 cd05479 RP_DDI RP_DDI; retrope 95.0 0.093 2E-06 44.4 7.2 91 101-250 14-107 (124)
32 PF08284 RVP_2: Retroviral asp 94.8 0.097 2.1E-06 45.0 6.7 27 453-479 105-131 (135)
33 PF11925 DUF3443: Protein of u 94.5 0.32 7E-06 48.2 10.3 23 204-226 82-104 (370)
34 TIGR03698 clan_AA_DTGF clan AA 89.9 1.2 2.7E-05 36.5 6.6 23 453-475 85-107 (107)
35 cd05484 retropepsin_like_LTR_2 89.9 0.29 6.3E-06 38.7 2.8 28 104-134 1-28 (91)
36 COG3577 Predicted aspartyl pro 86.8 1.2 2.5E-05 40.6 4.8 103 92-250 94-197 (215)
37 TIGR02281 clan_AA_DTGA clan AA 85.9 1.9 4.2E-05 36.1 5.6 36 315-368 9-44 (121)
38 PF13975 gag-asp_proteas: gag- 83.4 1.6 3.5E-05 32.9 3.6 31 101-134 6-36 (72)
39 PF13650 Asp_protease_2: Aspar 81.6 2.1 4.6E-05 33.1 3.9 21 348-368 11-31 (90)
40 cd05484 retropepsin_like_LTR_2 81.1 3.1 6.6E-05 32.8 4.7 29 325-368 5-33 (91)
41 PF00077 RVP: Retroviral aspar 77.2 2.6 5.7E-05 33.7 3.2 28 104-134 6-33 (100)
42 cd05483 retropepsin_like_bacte 74.1 6.2 0.00013 30.8 4.6 21 348-368 15-35 (96)
43 PF13975 gag-asp_proteas: gag- 73.8 5.7 0.00012 29.8 4.1 20 349-368 22-41 (72)
44 PF02160 Peptidase_A3: Caulifl 73.6 3.1 6.7E-05 38.0 3.0 51 404-478 66-116 (201)
45 PF12384 Peptidase_A2B: Ty3 tr 70.9 12 0.00025 33.0 5.6 22 347-368 46-67 (177)
46 cd06094 RP_Saci_like RP_Saci_l 68.8 23 0.00049 27.9 6.3 20 346-365 9-28 (89)
47 cd06095 RP_RTVL_H_like Retrope 68.5 7.2 0.00016 30.3 3.7 20 349-368 12-31 (86)
48 PF09668 Asp_protease: Asparty 65.2 9 0.0002 32.3 3.8 90 101-249 22-114 (124)
49 cd05482 HIV_retropepsin_like R 63.5 7.1 0.00015 30.7 2.7 25 107-134 2-26 (87)
50 cd06095 RP_RTVL_H_like Retrope 60.7 8.1 0.00018 30.1 2.6 25 107-134 2-26 (86)
51 PF07172 GRP: Glycine rich pro 60.0 7.5 0.00016 31.1 2.3 22 1-23 1-22 (95)
52 PF00077 RVP: Retroviral aspar 56.9 9.4 0.0002 30.4 2.5 17 348-364 18-34 (100)
53 COG3577 Predicted aspartyl pro 48.0 84 0.0018 28.9 7.2 35 315-367 103-137 (215)
54 cd05481 retropepsin_like_LTR_1 47.9 22 0.00048 28.1 3.3 22 347-368 11-32 (93)
55 COG5550 Predicted aspartyl pro 46.2 15 0.00031 30.8 2.0 20 349-368 29-49 (125)
56 PF09668 Asp_protease: Asparty 38.0 39 0.00085 28.4 3.4 30 324-368 28-57 (124)
57 PF12384 Peptidase_A2B: Ty3 tr 35.7 42 0.00091 29.6 3.2 29 103-134 34-62 (177)
58 PF15240 Pro-rich: Proline-ric 27.0 39 0.00085 30.2 1.7 6 8-13 2-7 (179)
59 TIGR03698 clan_AA_DTGF clan AA 24.0 82 0.0018 25.6 3.0 26 106-132 2-32 (107)
60 cd06098 phytepsin Phytepsin, a 22.7 68 0.0015 31.6 2.7 17 347-363 24-40 (317)
61 cd06097 Aspergillopepsin_like 21.3 88 0.0019 30.0 3.2 16 348-363 15-30 (278)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=4.4e-66 Score=530.35 Aligned_cols=395 Identities=29% Similarity=0.506 Sum_probs=314.6
Q ss_pred CCCceEEEecccCCcCC-cCCCCCCChHHHHHHHHhhhHhhHHhhhccCCCCCCCCCCCCCcccccccccccccCcccEE
Q 011566 27 SSAATVTVPLTPLSTKH-YLHHSDSDPLKILHSLASSSLSRARHLKTKTKPKTKDSNIGSNYSNSLIKTPLSVHSYGGYS 105 (483)
Q Consensus 27 ~~~~~~~lpl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~ 105 (483)
.+...++++|.|+..++ |+++++.++.+++++.++|+.+|++++.++. . ....+..++.. +++.|+
T Consensus 20 ~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~---------~~~~~~~~~~~-~~~~Y~ 86 (431)
T PLN03146 20 APKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTD---A---------SPNDPQSDLIS-NGGEYL 86 (431)
T ss_pred ccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcc---c---------cCCccccCccc-CCccEE
Confidence 34568999999987653 3556777888999999999999999886541 1 01123334433 357999
Q ss_pred EEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCcCCCCCCCCCCCCCC
Q 011566 106 ISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNVESRC 185 (483)
Q Consensus 106 ~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c~~~~~~~~~~~c 185 (483)
++|.||||||+ +.|++||||+++||+|. +|..|.. +..+.|||++|+||+.++|.++.|+.+...
T Consensus 87 v~i~iGTPpq~-~~vi~DTGS~l~Wv~C~---~C~~C~~-----~~~~~fdps~SST~~~~~C~s~~C~~~~~~------ 151 (431)
T PLN03146 87 MNISIGTPPVP-ILAIADTGSDLIWTQCK---PCDDCYK-----QVSPLFDPKKSSTYKDVSCDSSQCQALGNQ------ 151 (431)
T ss_pred EEEEcCCCCce-EEEEECCCCCcceEcCC---CCccccc-----CCCCcccCCCCCCCcccCCCCcccccCCCC------
Confidence 99999999999 99999999999999999 9999976 457899999999999999999999876532
Q ss_pred CCCCCCCCCCCCCCCcceeecccee-EEEEEEEEEEEeCCc-----CcCceeeeccccCC----CCCceEeecCCCCCCc
Q 011566 186 KGCSPRNKTCPLACPSYLLQYGLGF-TAGLLLSETLRFPSK-----TVPNFLAGCSILSD----RQPAGIAGFGRSSESL 255 (483)
Q Consensus 186 ~~c~~~~~~c~~~c~~~~~~Yg~g~-~~G~~~~D~v~~~~~-----~~~~~~fg~~~~~~----~~~~GIlGLg~~~~S~ 255 (483)
..|..+ +.| .|.+.|++|+ +.|.+++|+|+|++. +++++.|||++... ...+||||||++.+|+
T Consensus 152 ~~c~~~-~~c-----~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl 225 (431)
T PLN03146 152 ASCSDE-NTC-----TYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSL 225 (431)
T ss_pred CCCCCC-CCC-----eeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccH
Confidence 123222 235 9999999998 799999999999873 58899999998543 2359999999999999
Q ss_pred cccccc---ceeeeecccCcCCCCCCccceEEccCCCCCCCCC-CCceeeeceeCCCCCCCCCCcceeEEeeEEEECcEE
Q 011566 256 PSQLGL---KKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKT-PGLSYTPFYKNPVGSSSAFGEFYYVGLRQIIVGSKH 331 (483)
Q Consensus 256 ~~Ql~~---~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~-g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~vg~~~ 331 (483)
++|+.. ++|||||.+.. +.....|.|+||+. .+ +. +.+.|+|++.+.. ..+|+|+|++|+||++.
T Consensus 226 ~sql~~~~~~~FSycL~~~~--~~~~~~g~l~fG~~--~~-~~~~~~~~tPl~~~~~------~~~y~V~L~gIsVgg~~ 294 (431)
T PLN03146 226 ISQLGSSIGGKFSYCLVPLS--SDSNGTSKINFGTN--AI-VSGSGVVSTPLVSKDP------DTFYYLTLEAISVGSKK 294 (431)
T ss_pred HHHhhHhhCCcEEEECCCCC--CCCCCcceEEeCCc--cc-cCCCCceEcccccCCC------CCeEEEeEEEEEECCEE
Confidence 999864 58999997631 11234689999984 33 43 4589999986421 47899999999999999
Q ss_pred eeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCccCcccccCCCccccCeEEEE
Q 011566 332 VKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSVYLPELILK 411 (483)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~ 411 (483)
++++...+. ..+.+++||||||++++||+++|++|+++|...+...... .....+..|+.... ...+|+|+|+
T Consensus 295 l~~~~~~~~--~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~---~~~~~~~~C~~~~~--~~~~P~i~~~ 367 (431)
T PLN03146 295 LPYTGSSKN--GVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVS---DPQGLLSLCYSSTS--DIKLPIITAH 367 (431)
T ss_pred CcCCccccc--cCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCC---CCCCCCCccccCCC--CCCCCeEEEE
Confidence 988776654 2344689999999999999999999999999887632211 12234679997532 2578999999
Q ss_pred EcCCcEEEcCCCCceEEeCCceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeCCCCEEEEEeCCCC
Q 011566 412 FKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAKQKCA 483 (483)
Q Consensus 412 f~gg~~~~l~~~~y~~~~~~~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~igfa~~~C~ 483 (483)
| +|+++.|++++|++...++..|++++.. ...||||+.|||++|+|||++++|||||+++|+
T Consensus 368 F-~Ga~~~l~~~~~~~~~~~~~~Cl~~~~~---------~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~ 429 (431)
T PLN03146 368 F-TGADVKLQPLNTFVKVSEDLVCFAMIPT---------SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT 429 (431)
T ss_pred E-CCCeeecCcceeEEEcCCCcEEEEEecC---------CCceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence 9 6899999999999987767789987642 135999999999999999999999999999996
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=7.2e-57 Score=464.32 Aligned_cols=310 Identities=20% Similarity=0.326 Sum_probs=251.4
Q ss_pred cccccccccCcccEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCC
Q 011566 91 LIKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQN 170 (483)
Q Consensus 91 ~~~~~l~~~~~~~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~ 170 (483)
....+|.++.+..|+++|+||||||+ |.|+|||||+++||+|. .|..| .|+.++.|||++|+||+.+.++.
T Consensus 108 ~~~~~l~n~~d~~Y~~~I~IGTPpQ~-f~Vv~DTGSS~lWVps~---~C~~~-----~C~~~~~yd~s~SSTy~~~~~~~ 178 (482)
T PTZ00165 108 YLQQDLLNFHNSQYFGEIQVGTPPKS-FVVVFDTGSSNLWIPSK---ECKSG-----GCAPHRKFDPKKSSTYTKLKLGD 178 (482)
T ss_pred ccceecccccCCeEEEEEEeCCCCce-EEEEEeCCCCCEEEEch---hcCcc-----cccccCCCCccccCCcEecCCCC
Confidence 36788999999999999999999999 99999999999999998 88642 23457899999999999854211
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeccceeEEEEEEEEEEEeCCcCcCceeeeccccCCC------CCce
Q 011566 171 PKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSDR------QPAG 244 (483)
Q Consensus 171 ~~c~~~~~~~~~~~c~~c~~~~~~c~~~c~~~~~~Yg~g~~~G~~~~D~v~~~~~~~~~~~fg~~~~~~~------~~~G 244 (483)
. .. .+.+.||+|++.|.++.|+|+|++..+++|.||+++.... ..||
T Consensus 179 ~----------------------~~-----~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~~~s~~~f~~~~~DG 231 (482)
T PTZ00165 179 E----------------------SA-----ETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLAIEESLHPFADLPFDG 231 (482)
T ss_pred c----------------------cc-----eEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEEEeccccccccccccc
Confidence 0 00 4679999999999999999999999999999999875421 2499
Q ss_pred EeecCCCCCCc---------c----cc--cccceeeeecccCcCCCCCCccceEEccCCCCCCCC--CCCceeeeceeCC
Q 011566 245 IAGFGRSSESL---------P----SQ--LGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSK--TPGLSYTPFYKNP 307 (483)
Q Consensus 245 IlGLg~~~~S~---------~----~Q--l~~~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~--~g~l~~~p~~~~~ 307 (483)
|||||++.++. . +| +..+.||+||.++ ...+|+++|||+|+.+ + .+++.|+|+..
T Consensus 232 ILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~-----~~~~G~l~fGGiD~~~-~~~~g~i~~~Pv~~-- 303 (482)
T PTZ00165 232 LVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKD-----LNQPGSISFGSADPKY-TLEGHKIWWFPVIS-- 303 (482)
T ss_pred eeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccC-----CCCCCEEEeCCcCHHH-cCCCCceEEEEccc--
Confidence 99999987532 1 22 3458999999753 2247899999999866 5 57899999976
Q ss_pred CCCCCCCCcceeEEeeEEEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccc
Q 011566 308 VGSSSAFGEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEK 387 (483)
Q Consensus 308 ~~~~~~~~~~w~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~ 387 (483)
..||+|.+++|+||++.+... .+...+|+||||+++++|++++++|.++++.
T Consensus 304 -------~~yW~i~l~~i~vgg~~~~~~--------~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~------------- 355 (482)
T PTZ00165 304 -------TDYWEIEVVDILIDGKSLGFC--------DRKCKAAIDTGSSLITGPSSVINPLLEKIPL------------- 355 (482)
T ss_pred -------cceEEEEeCeEEECCEEeeec--------CCceEEEEcCCCccEeCCHHHHHHHHHHcCC-------------
Confidence 579999999999999877652 1236799999999999999999999887632
Q ss_pred cCCccCcccccCCCccccCeEEEEEcCCc-----EEEcCCCCceEEe----CCceEEEEEEecCCCCCCCCCCCceeeCc
Q 011566 388 KSGLRPCFDISGKKSVYLPELILKFKGGA-----KMALPPENYFALV----GNEVLCLILFTDNAAGPALGRGPAIILGD 458 (483)
Q Consensus 388 ~~~~~~C~~~~~~~~~~~P~i~f~f~gg~-----~~~l~~~~y~~~~----~~~~~C~~~i~~~~~~~~~~~~~~~IlG~ 458 (483)
..+|+.. ..+|+|+|+| +|. +|.|+|++|+.+. ..+..|+..+...+. +...++.||||+
T Consensus 356 ---~~~C~~~-----~~lP~itf~f-~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~--~~~~g~~~ILGd 424 (482)
T PTZ00165 356 ---EEDCSNK-----DSLPRISFVL-EDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDV--PAPRGPLFVLGN 424 (482)
T ss_pred ---ccccccc-----ccCCceEEEE-CCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCC--CCCCCceEEEch
Confidence 1378865 6789999999 543 8999999999874 235689988875542 122346799999
Q ss_pred cceeeeEEEEeCCCCEEEEEeCCCC
Q 011566 459 FQLQNFYLEFDLANDRFGFAKQKCA 483 (483)
Q Consensus 459 ~fl~~~yvvfD~~~~~igfa~~~C~ 483 (483)
+|||++|+|||.+|+|||||+++|.
T Consensus 425 ~Flr~yy~VFD~~n~rIGfA~a~~~ 449 (482)
T PTZ00165 425 NFIRKYYSIFDRDHMMVGLVPAKHD 449 (482)
T ss_pred hhheeEEEEEeCCCCEEEEEeeccC
Confidence 9999999999999999999999984
No 3
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-55 Score=449.59 Aligned_cols=342 Identities=38% Similarity=0.676 Sum_probs=282.2
Q ss_pred cccccccCcccEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCcceecCCCc
Q 011566 93 KTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCV-DCNFPNVDPSRIPAFIPKRSSSSQLIGCQNP 171 (483)
Q Consensus 93 ~~~l~~~~~~~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~-~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~ 171 (483)
..++....++.|+++|.||||||+ |.|++||||+++||+|. +|. .|... ..+.|+|++|+||+.+.|.+.
T Consensus 36 ~~~~~~~~~~~Y~~~i~IGTPpq~-f~v~~DTGS~~lWV~c~---~c~~~C~~~-----~~~~f~p~~SSt~~~~~c~~~ 106 (398)
T KOG1339|consen 36 PESLSSYSSGEYYGNISIGTPPQS-FTVVLDTGSDLLWVPCA---PCSSACYSQ-----HNPIFDPSASSTYKSVGCSSP 106 (398)
T ss_pred ccccccccccccEEEEecCCCCee-eEEEEeCCCCceeeccc---ccccccccc-----CCCccCccccccccccCCCCc
Confidence 444555667899999999999999 99999999999999999 998 78752 245599999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeecccee-EEEEEEEEEEEeCC---cCcCceeeeccccCC------CC
Q 011566 172 KCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGF-TAGLLLSETLRFPS---KTVPNFLAGCSILSD------RQ 241 (483)
Q Consensus 172 ~c~~~~~~~~~~~c~~c~~~~~~c~~~c~~~~~~Yg~g~-~~G~~~~D~v~~~~---~~~~~~~fg~~~~~~------~~ 241 (483)
.|...... | .+++.| .|.+.||+|+ +.|++++|+|+|++ ..++++.|||+.... ..
T Consensus 107 ~c~~~~~~--------~-~~~~~C-----~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~ 172 (398)
T KOG1339|consen 107 RCKSLPQS--------C-SPNSSC-----PYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGSFGLFAA 172 (398)
T ss_pred cccccccC--------c-ccCCcC-----ceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccccccccc
Confidence 99987531 1 223445 9999999965 99999999999998 788889999988653 23
Q ss_pred CceEeecCCCCCCccccccc-----ceeeeecccCcCCCCCCccceEEccCCCCCCCCCCCceeeeceeCCCCCCCCCCc
Q 011566 242 PAGIAGFGRSSESLPSQLGL-----KKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGE 316 (483)
Q Consensus 242 ~~GIlGLg~~~~S~~~Ql~~-----~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~ 316 (483)
.+||||||++.+|++.|+.. ++||+||.+...+. ..+|.|+||++|+.+ +.+.+.|+|+...+ ..
T Consensus 173 ~dGIlGLg~~~~S~~~q~~~~~~~~~~FS~cL~~~~~~~--~~~G~i~fG~~d~~~-~~~~l~~tPl~~~~-------~~ 242 (398)
T KOG1339|consen 173 FDGILGLGRGSLSVPSQLPSFYNAINVFSYCLSSNGSPS--SGGGSIIFGGVDSSH-YTGSLTYTPLLSNP-------ST 242 (398)
T ss_pred cceEeecCCCCccceeecccccCCceeEEEEeCCCCCCC--CCCcEEEECCCcccC-cCCceEEEeeccCC-------Cc
Confidence 59999999999999999876 45999999863211 358999999999998 89999999999864 35
Q ss_pred ceeEEeeEEEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCccCccc
Q 011566 317 FYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFD 396 (483)
Q Consensus 317 ~w~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 396 (483)
+|+|.+++|+||++. .++...+..+ ..++||||||++++||+++|++|.++|.+.+.. ......+.+.|+.
T Consensus 243 ~y~v~l~~I~vgg~~-~~~~~~~~~~---~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~-----~~~~~~~~~~C~~ 313 (398)
T KOG1339|consen 243 YYQVNLDGISVGGKR-PIGSSLFCTD---GGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV-----VGTDGEYFVPCFS 313 (398)
T ss_pred cEEEEEeEEEECCcc-CCCcceEecC---CCCEEEECCcceeeccHHHHHHHHHHHHhheec-----cccCCceeeeccc
Confidence 999999999999987 6665555422 478999999999999999999999999887400 1233456789998
Q ss_pred ccCCCccccCeEEEEEcCCcEEEcCCCCceEEeCCceE-EEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeCC-CCE
Q 011566 397 ISGKKSVYLPELILKFKGGAKMALPPENYFALVGNEVL-CLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLA-NDR 474 (483)
Q Consensus 397 ~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~-C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~-~~~ 474 (483)
..... ..+|+|+|+|.+|+.|.+++++|+++...+.. |++++...+. .+.||||+.|||+++++||.. ++|
T Consensus 314 ~~~~~-~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~~Cl~~~~~~~~------~~~~ilG~~~~~~~~~~~D~~~~~r 386 (398)
T KOG1339|consen 314 ISTSG-VKLPDITFHFGGGAVFSLPPKNYLVEVSDGGGVCLAFFNGMDS------GPLWILGDVFQQNYLVVFDLGENSR 386 (398)
T ss_pred CCCCc-ccCCcEEEEECCCcEEEeCccceEEEECCCCCceeeEEecCCC------CceEEEchHHhCCEEEEEeCCCCCE
Confidence 74322 34899999995589999999999998766444 9999975431 157999999999999999999 999
Q ss_pred EEEEe--CCCC
Q 011566 475 FGFAK--QKCA 483 (483)
Q Consensus 475 igfa~--~~C~ 483 (483)
||||+ .+|+
T Consensus 387 iGfa~~~~~c~ 397 (398)
T KOG1339|consen 387 VGFAPALTNCS 397 (398)
T ss_pred EEeccccccCC
Confidence 99999 7885
No 4
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=6.9e-55 Score=435.00 Aligned_cols=304 Identities=26% Similarity=0.377 Sum_probs=245.2
Q ss_pred cCcccEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCcCCCCCCC
Q 011566 99 HSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFG 178 (483)
Q Consensus 99 ~~~~~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c~~~~~ 178 (483)
+.+.+|+++|.||||||+ +.|+|||||+++||+|. .|..|. ..|..++.|+|++|+||+...
T Consensus 2 ~~~~~Y~~~i~iGtP~q~-~~v~~DTGSs~~Wv~~~---~C~~~~---~~C~~~~~y~~~~SsT~~~~~----------- 63 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQT-FTVVFDTGSSNLWVPSV---HCSLLD---IACWLHHKYNSSKSSTYVKNG----------- 63 (325)
T ss_pred CcCCEEEEEEEECCCCcE-EEEEEeCCCccEEEEcC---CCCCCC---ccccCcCcCCcccCcceeeCC-----------
Confidence 346899999999999999 99999999999999998 886431 123457899999999998633
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcceeeccceeEEEEEEEEEEEeCCcCcCceeeeccccCC------CCCceEeecCCCC
Q 011566 179 PNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSD------RQPAGIAGFGRSS 252 (483)
Q Consensus 179 ~~~~~~c~~c~~~~~~c~~~c~~~~~~Yg~g~~~G~~~~D~v~~~~~~~~~~~fg~~~~~~------~~~~GIlGLg~~~ 252 (483)
| .|.+.|++|++.|.+++|+|+|++.+++++.|||++... ...+||||||++.
T Consensus 64 ----------------~-----~~~i~Yg~G~~~G~~~~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~ 122 (325)
T cd05490 64 ----------------T-----EFAIQYGSGSLSGYLSQDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPR 122 (325)
T ss_pred ----------------c-----EEEEEECCcEEEEEEeeeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCcc
Confidence 1 899999999999999999999999999999999987532 1249999999987
Q ss_pred CCccc------c------cccceeeeecccCcCCCCCCccceEEccCCCCCCCCCCCceeeeceeCCCCCCCCCCcceeE
Q 011566 253 ESLPS------Q------LGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYV 320 (483)
Q Consensus 253 ~S~~~------Q------l~~~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~w~v 320 (483)
++... + +..+.||+||.++. ....+|.|+|||+|+++ +.+++.|+|+.. ..+|.|
T Consensus 123 ~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~---~~~~~G~l~~Gg~d~~~-~~g~l~~~~~~~---------~~~w~v 189 (325)
T cd05490 123 ISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDP---DAQPGGELMLGGTDPKY-YTGDLHYVNVTR---------KAYWQI 189 (325)
T ss_pred ccccCCCCHHHHHHhcCCCCCCEEEEEEeCCC---CCCCCCEEEECccCHHH-cCCceEEEEcCc---------ceEEEE
Confidence 66432 2 33489999998531 12246899999999998 999999999965 569999
Q ss_pred EeeEEEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCccCcccccCC
Q 011566 321 GLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGK 400 (483)
Q Consensus 321 ~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 400 (483)
++++|+||++.... .....+||||||+++++|++++++|.+++.+. . ...+.+.++|+..
T Consensus 190 ~l~~i~vg~~~~~~---------~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~----~----~~~~~~~~~C~~~--- 249 (325)
T cd05490 190 HMDQVDVGSGLTLC---------KGGCEAIVDTGTSLITGPVEEVRALQKAIGAV----P----LIQGEYMIDCEKI--- 249 (325)
T ss_pred EeeEEEECCeeeec---------CCCCEEEECCCCccccCCHHHHHHHHHHhCCc----c----ccCCCEEeccccc---
Confidence 99999999864321 12367999999999999999999999887542 1 1223566788865
Q ss_pred CccccCeEEEEEcCCcEEEcCCCCceEEeCC--ceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeCCCCEEEEE
Q 011566 401 KSVYLPELILKFKGGAKMALPPENYFALVGN--EVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFA 478 (483)
Q Consensus 401 ~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~--~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~igfa 478 (483)
..+|+|+|+| +|+.|+|+|++|+++... ...|++.++..+. .......||||+.|||++|+|||++++|||||
T Consensus 250 --~~~P~i~f~f-gg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~--~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA 324 (325)
T cd05490 250 --PTLPVISFSL-GGKVYPLTGEDYILKVSQRGTTICLSGFMGLDI--PPPAGPLWILGDVFIGRYYTVFDRDNDRVGFA 324 (325)
T ss_pred --ccCCCEEEEE-CCEEEEEChHHeEEeccCCCCCEEeeEEEECCC--CCCCCceEEEChHhheeeEEEEEcCCcEeecc
Confidence 6789999999 899999999999987543 4579988765432 11234579999999999999999999999999
Q ss_pred e
Q 011566 479 K 479 (483)
Q Consensus 479 ~ 479 (483)
+
T Consensus 325 ~ 325 (325)
T cd05490 325 K 325 (325)
T ss_pred C
Confidence 6
No 5
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=4.1e-55 Score=434.99 Aligned_cols=298 Identities=26% Similarity=0.394 Sum_probs=249.5
Q ss_pred cccccCcccEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCcCCC
Q 011566 95 PLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCS 174 (483)
Q Consensus 95 ~l~~~~~~~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c~ 174 (483)
||.++.+..|+++|.||||||+ +.|+|||||+++||+|. .|..|. |+.++.|+|++|+|++...|
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~-~~v~~DTGS~~~wv~~~---~C~~~~-----c~~~~~f~~~~Sst~~~~~~------ 66 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQD-FTVIFDTGSSNLWVPSV---YCSSQA-----CSNHNRFNPRQSSTYQSTGQ------ 66 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcE-EEEEEeCCCccEEEecC---CCCccc-----ccccCcCCCCCCcceeeCCc------
Confidence 6788888999999999999999 99999999999999998 886531 34478999999999987552
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcceeeccceeEEEEEEEEEEEeCCcCcCceeeeccccCC------CCCceEeec
Q 011566 175 WIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSD------RQPAGIAGF 248 (483)
Q Consensus 175 ~~~~~~~~~~c~~c~~~~~~c~~~c~~~~~~Yg~g~~~G~~~~D~v~~~~~~~~~~~fg~~~~~~------~~~~GIlGL 248 (483)
.+.+.|++|++.|.++.|+|++++..++++.|||+.... ...+|||||
T Consensus 67 --------------------------~~~~~yg~gs~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGL 120 (317)
T cd05478 67 --------------------------PLSIQYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGL 120 (317)
T ss_pred --------------------------EEEEEECCceEEEEEeeeEEEECCEEECCEEEEEEEecCccccccccccceeee
Confidence 899999999999999999999999999999999997542 124999999
Q ss_pred CCCCCC------ccccc------ccceeeeecccCcCCCCCCccceEEccCCCCCCCCCCCceeeeceeCCCCCCCCCCc
Q 011566 249 GRSSES------LPSQL------GLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGE 316 (483)
Q Consensus 249 g~~~~S------~~~Ql------~~~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~ 316 (483)
|++.++ +..|| ..+.||+||.++ ...+|.|+|||+|+++ +.|+++|+|+.. ..
T Consensus 121 g~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~-----~~~~g~l~~Gg~d~~~-~~g~l~~~p~~~---------~~ 185 (317)
T cd05478 121 AYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSN-----GQQGSVVTFGGIDPSY-YTGSLNWVPVTA---------ET 185 (317)
T ss_pred ccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCC-----CCCCeEEEEcccCHHH-ccCceEEEECCC---------Cc
Confidence 987644 33443 348999999874 2246899999999988 999999999975 57
Q ss_pred ceeEEeeEEEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCccCccc
Q 011566 317 FYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFD 396 (483)
Q Consensus 317 ~w~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 396 (483)
+|.|.+++|+|+++.+... ....+||||||++++||++++++|++++..... ..+.+.++|+.
T Consensus 186 ~w~v~l~~v~v~g~~~~~~---------~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~--------~~~~~~~~C~~ 248 (317)
T cd05478 186 YWQITVDSVTINGQVVACS---------GGCQAIVDTGTSLLVGPSSDIANIQSDIGASQN--------QNGEMVVNCSS 248 (317)
T ss_pred EEEEEeeEEEECCEEEccC---------CCCEEEECCCchhhhCCHHHHHHHHHHhCCccc--------cCCcEEeCCcC
Confidence 8999999999999987532 235799999999999999999999988854321 22345678876
Q ss_pred ccCCCccccCeEEEEEcCCcEEEcCCCCceEEeCCceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeCCCCEEE
Q 011566 397 ISGKKSVYLPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFG 476 (483)
Q Consensus 397 ~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~ig 476 (483)
. ..+|.|+|+| +|++|+||+++|+... ...|++.++..+ ....||||++|||++|+|||++++|||
T Consensus 249 ~-----~~~P~~~f~f-~g~~~~i~~~~y~~~~--~~~C~~~~~~~~------~~~~~IlG~~fl~~~y~vfD~~~~~iG 314 (317)
T cd05478 249 I-----SSMPDVVFTI-NGVQYPLPPSAYILQD--QGSCTSGFQSMG------LGELWILGDVFIRQYYSVFDRANNKVG 314 (317)
T ss_pred c-----ccCCcEEEEE-CCEEEEECHHHheecC--CCEEeEEEEeCC------CCCeEEechHHhcceEEEEeCCCCEEe
Confidence 5 5789999999 8999999999999865 568999887532 235699999999999999999999999
Q ss_pred EEe
Q 011566 477 FAK 479 (483)
Q Consensus 477 fa~ 479 (483)
||+
T Consensus 315 ~A~ 317 (317)
T cd05478 315 LAP 317 (317)
T ss_pred ecC
Confidence 996
No 6
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2.2e-54 Score=429.47 Aligned_cols=294 Identities=26% Similarity=0.410 Sum_probs=242.9
Q ss_pred ccccccCcccEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCcceecCCC
Q 011566 94 TPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCV---DCNFPNVDPSRIPAFIPKRSSSSQLIGCQN 170 (483)
Q Consensus 94 ~~l~~~~~~~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~---~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~ 170 (483)
++|.++.+..|+++|.||||||+ +.|+|||||+++||+|. .|. .|. .++.|+|++|+||+...+
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~-~~v~~DTGSs~lWv~~~---~C~~~~~C~-------~~~~y~~~~SsT~~~~~~-- 67 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQK-FTVIFDTGSSNLWVPSS---KCYFSIACY-------FHSKYKSSKSSTYKKNGT-- 67 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeE-EEEEECCCccceEEecC---CCCCCcccc-------ccCcCCcccCCCcccCCC--
Confidence 36778888999999999999999 99999999999999998 885 464 368999999999987541
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeccceeEEEEEEEEEEEeCCcCcCceeeeccccCC------CCCce
Q 011566 171 PKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSD------RQPAG 244 (483)
Q Consensus 171 ~~c~~~~~~~~~~~c~~c~~~~~~c~~~c~~~~~~Yg~g~~~G~~~~D~v~~~~~~~~~~~fg~~~~~~------~~~~G 244 (483)
.+.+.||+|++.|.+++|+|++++.+++++.||+++... ...+|
T Consensus 68 ------------------------------~~~i~Yg~G~~~G~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dG 117 (317)
T cd06098 68 ------------------------------SASIQYGTGSISGFFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDG 117 (317)
T ss_pred ------------------------------EEEEEcCCceEEEEEEeeEEEECCEEECCEEEEEEEecCCccccccccce
Confidence 789999999999999999999999999999999987432 23499
Q ss_pred EeecCCCCCCc----------ccc--cccceeeeecccCcCCCCCCccceEEccCCCCCCCCCCCceeeeceeCCCCCCC
Q 011566 245 IAGFGRSSESL----------PSQ--LGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSS 312 (483)
Q Consensus 245 IlGLg~~~~S~----------~~Q--l~~~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~ 312 (483)
|||||++..+. .+| +..++||+||.+.. ....+|.|+|||+|+++ +.|+++|+|+..
T Consensus 118 ilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~---~~~~~G~l~fGg~d~~~-~~g~l~~~pv~~------- 186 (317)
T cd06098 118 ILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNP---DEEEGGELVFGGVDPKH-FKGEHTYVPVTR------- 186 (317)
T ss_pred eccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCC---CCCCCcEEEECccChhh-cccceEEEecCc-------
Confidence 99999987654 233 44579999998631 12347899999999999 999999999975
Q ss_pred CCCcceeEEeeEEEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCcc
Q 011566 313 AFGEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLR 392 (483)
Q Consensus 313 ~~~~~w~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 392 (483)
..||.|.+++|+|+++.+.... ....+||||||+++++|++++++|. +.+
T Consensus 187 --~~~w~v~l~~i~v~g~~~~~~~--------~~~~aivDTGTs~~~lP~~~~~~i~--------------------~~~ 236 (317)
T cd06098 187 --KGYWQFEMGDVLIGGKSTGFCA--------GGCAAIADSGTSLLAGPTTIVTQIN--------------------SAV 236 (317)
T ss_pred --CcEEEEEeCeEEECCEEeeecC--------CCcEEEEecCCcceeCCHHHHHhhh--------------------ccC
Confidence 5689999999999998876432 2367999999999999998776552 246
Q ss_pred CcccccCCCccccCeEEEEEcCCcEEEcCCCCceEEeCC--ceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeC
Q 011566 393 PCFDISGKKSVYLPELILKFKGGAKMALPPENYFALVGN--EVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDL 470 (483)
Q Consensus 393 ~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~--~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~ 470 (483)
+|+.. ..+|+|+|+| +|+.|+|++++|+++..+ ...|++.++..+. ....+..||||+.|||++|+|||+
T Consensus 237 ~C~~~-----~~~P~i~f~f-~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~--~~~~~~~~IlGd~Flr~~y~VfD~ 308 (317)
T cd06098 237 DCNSL-----SSMPNVSFTI-GGKTFELTPEQYILKVGEGAAAQCISGFTALDV--PPPRGPLWILGDVFMGAYHTVFDY 308 (317)
T ss_pred Ccccc-----ccCCcEEEEE-CCEEEEEChHHeEEeecCCCCCEEeceEEECCC--CCCCCCeEEechHHhcccEEEEeC
Confidence 89865 5689999999 899999999999987543 4589988865431 112345799999999999999999
Q ss_pred CCCEEEEEe
Q 011566 471 ANDRFGFAK 479 (483)
Q Consensus 471 ~~~~igfa~ 479 (483)
+++|||||+
T Consensus 309 ~~~~iGfA~ 317 (317)
T cd06098 309 GNLRVGFAE 317 (317)
T ss_pred CCCEEeecC
Confidence 999999996
No 7
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2.6e-54 Score=430.76 Aligned_cols=305 Identities=22% Similarity=0.359 Sum_probs=249.2
Q ss_pred cccCcccEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCcCCCCC
Q 011566 97 SVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWI 176 (483)
Q Consensus 97 ~~~~~~~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c~~~ 176 (483)
.++.+..|+++|+||||+|+ ++|+|||||+++||++. .|..|. ..|..++.|+|++|+||+...|
T Consensus 2 ~~~~~~~y~~~i~iGtP~q~-~~v~~DTGSs~~Wv~~~---~C~~~~---~~c~~~~~y~~~~SsT~~~~~~-------- 66 (326)
T cd05487 2 TNYLDTQYYGEIGIGTPPQT-FKVVFDTGSSNLWVPSS---KCSPLY---TACVTHNLYDASDSSTYKENGT-------- 66 (326)
T ss_pred cccCCCeEEEEEEECCCCcE-EEEEEeCCccceEEccC---CCcCcc---hhhcccCcCCCCCCeeeeECCE--------
Confidence 45667899999999999999 99999999999999988 786532 1245578999999999987542
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcceeeccceeEEEEEEEEEEEeCCcCcCceeeeccccCC------CCCceEeecCC
Q 011566 177 FGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSD------RQPAGIAGFGR 250 (483)
Q Consensus 177 ~~~~~~~~c~~c~~~~~~c~~~c~~~~~~Yg~g~~~G~~~~D~v~~~~~~~~~~~fg~~~~~~------~~~~GIlGLg~ 250 (483)
.|++.|++|++.|.+++|+|++++..+. +.||++.... ...+||||||+
T Consensus 67 ------------------------~~~~~Yg~g~~~G~~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~ 121 (326)
T cd05487 67 ------------------------EFTIHYASGTVKGFLSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGY 121 (326)
T ss_pred ------------------------EEEEEeCCceEEEEEeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCC
Confidence 8999999999999999999999998874 8899987532 23499999999
Q ss_pred CCCC----------cccc--cccceeeeecccCcCCCCCCccceEEccCCCCCCCCCCCceeeeceeCCCCCCCCCCcce
Q 011566 251 SSES----------LPSQ--LGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFY 318 (483)
Q Consensus 251 ~~~S----------~~~Q--l~~~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~w 318 (483)
+..+ +.+| +..++||+||.+.. .....|.|+|||+|+++ +.|+++|+|+.. ..+|
T Consensus 122 ~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~---~~~~~G~l~fGg~d~~~-y~g~l~~~~~~~---------~~~w 188 (326)
T cd05487 122 PKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDS---SHSLGGEIVLGGSDPQH-YQGDFHYINTSK---------TGFW 188 (326)
T ss_pred hhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCC---CCCCCcEEEECCcChhh-ccCceEEEECCc---------CceE
Confidence 7655 3444 45589999998641 23357899999999999 999999999865 5689
Q ss_pred eEEeeEEEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCccCccccc
Q 011566 319 YVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDIS 398 (483)
Q Consensus 319 ~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 398 (483)
.|++++|+|+++.+... ....+||||||++++||+++++++++++.+... .+.+.++|+..
T Consensus 189 ~v~l~~i~vg~~~~~~~---------~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~---------~~~y~~~C~~~- 249 (326)
T cd05487 189 QIQMKGVSVGSSTLLCE---------DGCTAVVDTGASFISGPTSSISKLMEALGAKER---------LGDYVVKCNEV- 249 (326)
T ss_pred EEEecEEEECCEEEecC---------CCCEEEECCCccchhCcHHHHHHHHHHhCCccc---------CCCEEEecccc-
Confidence 99999999999876532 125799999999999999999999988754311 23456788865
Q ss_pred CCCccccCeEEEEEcCCcEEEcCCCCceEEeCC--ceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeCCCCEEE
Q 011566 399 GKKSVYLPELILKFKGGAKMALPPENYFALVGN--EVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFG 476 (483)
Q Consensus 399 ~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~--~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~ig 476 (483)
..+|.|+|+| +|+.++|++++|+++..+ ...|+..++..+. ....++.||||++|||++|+|||++++|||
T Consensus 250 ----~~~P~i~f~f-gg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~--~~~~~~~~ilG~~flr~~y~vfD~~~~~IG 322 (326)
T cd05487 250 ----PTLPDISFHL-GGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDI--PPPTGPLWVLGATFIRKFYTEFDRQNNRIG 322 (326)
T ss_pred ----CCCCCEEEEE-CCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCC--CCCCCCeEEEehHHhhccEEEEeCCCCEEe
Confidence 6789999999 899999999999987643 5689988875432 112335799999999999999999999999
Q ss_pred EEeC
Q 011566 477 FAKQ 480 (483)
Q Consensus 477 fa~~ 480 (483)
||+|
T Consensus 323 fA~a 326 (326)
T cd05487 323 FALA 326 (326)
T ss_pred eeeC
Confidence 9986
No 8
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.2e-53 Score=421.22 Aligned_cols=290 Identities=38% Similarity=0.667 Sum_probs=237.7
Q ss_pred cEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCcCCCCCCCCCCC
Q 011566 103 GYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNVE 182 (483)
Q Consensus 103 ~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c~~~~~~~~~ 182 (483)
+|+++|.||||||+ +.|+|||||+++||+|. +| |
T Consensus 1 ~Y~~~i~iGtP~q~-~~v~~DTGSs~~Wv~c~---~c----------------------------~-------------- 34 (299)
T cd05472 1 EYVVTVGLGTPARD-QTVIVDTGSDLTWVQCQ---PC----------------------------C-------------- 34 (299)
T ss_pred CeEEEEecCCCCcc-eEEEecCCCCcccccCC---CC----------------------------C--------------
Confidence 59999999999999 99999999999999876 44 1
Q ss_pred CCCCCCCCCCCCCCCCCCcceeecccee-EEEEEEEEEEEeCCc-CcCceeeeccccCCC---CCceEeecCCCCCCccc
Q 011566 183 SRCKGCSPRNKTCPLACPSYLLQYGLGF-TAGLLLSETLRFPSK-TVPNFLAGCSILSDR---QPAGIAGFGRSSESLPS 257 (483)
Q Consensus 183 ~~c~~c~~~~~~c~~~c~~~~~~Yg~g~-~~G~~~~D~v~~~~~-~~~~~~fg~~~~~~~---~~~GIlGLg~~~~S~~~ 257 (483)
.|.+.|++|+ +.|.+++|+|+|++. .++++.|||+..... ..+||||||+..+|++.
T Consensus 35 ------------------~~~i~Yg~Gs~~~G~~~~D~v~ig~~~~~~~~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ 96 (299)
T cd05472 35 ------------------LYQVSYGDGSYTTGDLATDTLTLGSSDVVPGFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPS 96 (299)
T ss_pred ------------------eeeeEeCCCceEEEEEEEEEEEeCCCCccCCEEEECCccCCCccCCCCEEEECCCCcchHHH
Confidence 8999999998 799999999999998 899999999985532 45999999999999999
Q ss_pred cccc---ceeeeecccCcCCCCCCccceEEccCCCCCCCCCCCceeeeceeCCCCCCCCCCcceeEEeeEEEECcEEeee
Q 011566 258 QLGL---KKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGLRQIIVGSKHVKI 334 (483)
Q Consensus 258 Ql~~---~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~vg~~~~~~ 334 (483)
|+.. ++||+||.+.. ...+|.|+|||+|+. .+++.|+|+..++.. ..+|.|+|++|+||++.+.+
T Consensus 97 ql~~~~~~~FS~~L~~~~----~~~~G~l~fGg~d~~---~g~l~~~pv~~~~~~-----~~~y~v~l~~i~vg~~~~~~ 164 (299)
T cd05472 97 QTASSYGGVFSYCLPDRS----SSSSGYLSFGAAASV---PAGASFTPMLSNPRV-----PTFYYVGLTGISVGGRRLPI 164 (299)
T ss_pred HhhHhhcCceEEEccCCC----CCCCceEEeCCcccc---CCCceECCCccCCCC-----CCeEEEeeEEEEECCEECCC
Confidence 8864 79999998631 235789999999985 789999999876421 46899999999999998875
Q ss_pred CCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCccCcccccCCCccccCeEEEEEcC
Q 011566 335 PYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSVYLPELILKFKG 414 (483)
Q Consensus 335 ~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g 414 (483)
++.. .....+||||||++++||+++|++|.+++.+.+....... ....+..|+..++.....+|+|+|+|++
T Consensus 165 ~~~~-----~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~---~~~~~~~C~~~~~~~~~~~P~i~f~f~~ 236 (299)
T cd05472 165 PPAS-----FGAGGVIIDSGTVITRLPPSAYAALRDAFRAAMAAYPRAP---GFSILDTCYDLSGFRSVSVPTVSLHFQG 236 (299)
T ss_pred Cccc-----cCCCCeEEeCCCcceecCHHHHHHHHHHHHHHhccCCCCC---CCCCCCccCcCCCCcCCccCCEEEEECC
Confidence 4321 2236799999999999999999999999988765322111 1122235987765545689999999955
Q ss_pred CcEEEcCCCCceEEe-CCceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeCCCCEEEEEeCCC
Q 011566 415 GAKMALPPENYFALV-GNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAKQKC 482 (483)
Q Consensus 415 g~~~~l~~~~y~~~~-~~~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~igfa~~~C 482 (483)
|++|.|++++|++.. ..+..|++++... .....||||+.|||++|+|||++++|||||+++|
T Consensus 237 g~~~~l~~~~y~~~~~~~~~~C~~~~~~~------~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 237 GADVELDASGVLYPVDDSSQVCLAFAGTS------DDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CCEEEeCcccEEEEecCCCCEEEEEeCCC------CCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 899999999999843 3467898766432 1234699999999999999999999999999999
No 9
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.8e-54 Score=430.28 Aligned_cols=294 Identities=25% Similarity=0.377 Sum_probs=241.1
Q ss_pred EEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCcceecCCCcCCCCCCCCCC
Q 011566 104 YSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCV--DCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNV 181 (483)
Q Consensus 104 Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~--~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c~~~~~~~~ 181 (483)
|+++|+||||||+ ++|+|||||+++||+|. .|. .|. .++.|+|++|+||+...|
T Consensus 1 Y~~~i~iGtP~Q~-~~v~~DTGSs~~Wv~s~---~C~~~~C~-------~~~~y~~~~SsT~~~~~~------------- 56 (316)
T cd05486 1 YFGQISIGTPPQN-FTVIFDTGSSNLWVPSI---YCTSQACT-------KHNRFQPSESSTYVSNGE------------- 56 (316)
T ss_pred CeEEEEECCCCcE-EEEEEcCCCccEEEecC---CCCCcccC-------ccceECCCCCcccccCCc-------------
Confidence 8999999999999 99999999999999998 886 353 468999999999987542
Q ss_pred CCCCCCCCCCCCCCCCCCCcceeeccceeEEEEEEEEEEEeCCcCcCceeeeccccCC------CCCceEeecCCCCCCc
Q 011566 182 ESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSD------RQPAGIAGFGRSSESL 255 (483)
Q Consensus 182 ~~~c~~c~~~~~~c~~~c~~~~~~Yg~g~~~G~~~~D~v~~~~~~~~~~~fg~~~~~~------~~~~GIlGLg~~~~S~ 255 (483)
.|.+.|++|++.|.+++|+|++++..++++.|||+.... ...+||||||++.++.
T Consensus 57 -------------------~~~i~Yg~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~ 117 (316)
T cd05486 57 -------------------AFSIQYGTGSLTGIIGIDQVTVEGITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAV 117 (316)
T ss_pred -------------------EEEEEeCCcEEEEEeeecEEEECCEEEcCEEEEEeeccCcccccccccceEeccCchhhcc
Confidence 899999999999999999999999999999999976431 2349999999987653
Q ss_pred ----------ccc--cccceeeeecccCcCCCCCCccceEEccCCCCCCCCCCCceeeeceeCCCCCCCCCCcceeEEee
Q 011566 256 ----------PSQ--LGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGLR 323 (483)
Q Consensus 256 ----------~~Q--l~~~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~ 323 (483)
.+| +..+.||+||.++. .....|.|+|||+|+++ +.|++.|+|+.. ..+|.|+++
T Consensus 118 ~~~~p~~~~l~~qg~i~~~~FS~~L~~~~---~~~~~g~l~fGg~d~~~-~~g~l~~~pi~~---------~~~w~v~l~ 184 (316)
T cd05486 118 DGVTPVFDNMMAQNLVELPMFSVYMSRNP---NSADGGELVFGGFDTSR-FSGQLNWVPVTV---------QGYWQIQLD 184 (316)
T ss_pred CCCCCHHHHHHhcCCCCCCEEEEEEccCC---CCCCCcEEEEcccCHHH-cccceEEEECCC---------ceEEEEEee
Confidence 223 34489999998631 12346899999999998 999999999975 579999999
Q ss_pred EEEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCccCcccccCCCcc
Q 011566 324 QIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSV 403 (483)
Q Consensus 324 ~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 403 (483)
+|+|+++.+..+ ....+||||||+++++|++++++|.+++... ...+.+.++|... .
T Consensus 185 ~i~v~g~~~~~~---------~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~---------~~~~~~~~~C~~~-----~ 241 (316)
T cd05486 185 NIQVGGTVIFCS---------DGCQAIVDTGTSLITGPSGDIKQLQNYIGAT---------ATDGEYGVDCSTL-----S 241 (316)
T ss_pred EEEEecceEecC---------CCCEEEECCCcchhhcCHHHHHHHHHHhCCc---------ccCCcEEEecccc-----c
Confidence 999999876432 1267999999999999999999998776432 1123456788765 5
Q ss_pred ccCeEEEEEcCCcEEEcCCCCceEEe--CCceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeCCCCEEEEEe
Q 011566 404 YLPELILKFKGGAKMALPPENYFALV--GNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAK 479 (483)
Q Consensus 404 ~~P~i~f~f~gg~~~~l~~~~y~~~~--~~~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~igfa~ 479 (483)
.+|+|+|+| +|+.|+|++++|++.. .....|++.++..+. ....+..||||++|||++|+|||++++|||||+
T Consensus 242 ~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~--~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 242 LMPSVTFTI-NGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDI--PPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred cCCCEEEEE-CCEEEEeCHHHeEEecccCCCCEEeeEEEECCC--CCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 789999999 8999999999999864 235689988865432 112345799999999999999999999999996
No 10
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=5.3e-54 Score=427.41 Aligned_cols=300 Identities=26% Similarity=0.401 Sum_probs=248.5
Q ss_pred ccccccCcccEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCcceecCCCc
Q 011566 94 TPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVD--CNFPNVDPSRIPAFIPKRSSSSQLIGCQNP 171 (483)
Q Consensus 94 ~~l~~~~~~~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~--C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~ 171 (483)
+||.++.+..|+++|+||||+|+ +.|+|||||+++||+|. .|.. |. .++.|+|++|+|++...|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~-~~v~~DTGSs~~wv~~~---~C~~~~C~-------~~~~y~~~~Sst~~~~~~--- 66 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQK-FKVILDTGSSNLWVPSV---KCGSIACF-------LHSKYDSSASSTYKANGT--- 66 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcE-EEEEEecCCcceEEEcC---CCCCcccC-------CcceECCCCCcceeeCCC---
Confidence 36778788999999999999999 99999999999999999 8864 54 367999999999986442
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeccceeEEEEEEEEEEEeCCcCcCceeeeccccCC------CCCceE
Q 011566 172 KCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSD------RQPAGI 245 (483)
Q Consensus 172 ~c~~~~~~~~~~~c~~c~~~~~~c~~~c~~~~~~Yg~g~~~G~~~~D~v~~~~~~~~~~~fg~~~~~~------~~~~GI 245 (483)
.+.+.|++|++.|.+++|+|++++..++++.|||+.... ...+||
T Consensus 67 -----------------------------~~~~~y~~g~~~G~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGi 117 (320)
T cd05488 67 -----------------------------EFKIQYGSGSLEGFVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGI 117 (320)
T ss_pred -----------------------------EEEEEECCceEEEEEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceE
Confidence 899999999999999999999999999999999997442 134999
Q ss_pred eecCCCCCCcccc------------cccceeeeecccCcCCCCCCccceEEccCCCCCCCCCCCceeeeceeCCCCCCCC
Q 011566 246 AGFGRSSESLPSQ------------LGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSA 313 (483)
Q Consensus 246 lGLg~~~~S~~~Q------------l~~~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~ 313 (483)
||||++..+...+ +..++||+||.+.. ..+|.|+|||+|+++ +.++++|+|+..
T Consensus 118 lGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~-----~~~G~l~fGg~d~~~-~~g~l~~~p~~~-------- 183 (320)
T cd05488 118 LGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE-----EDGGEATFGGIDESR-FTGKITWLPVRR-------- 183 (320)
T ss_pred EecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC-----CCCcEEEECCcCHHH-cCCceEEEeCCc--------
Confidence 9999988765421 34589999998741 246899999999988 999999999975
Q ss_pred CCcceeEEeeEEEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCccC
Q 011566 314 FGEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRP 393 (483)
Q Consensus 314 ~~~~w~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (483)
..+|.|++++|+||++.+..+ ...++|||||++++||++++++|.+++.+.. ...+.+.++
T Consensus 184 -~~~w~v~l~~i~vg~~~~~~~----------~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~--------~~~~~~~~~ 244 (320)
T cd05488 184 -KAYWEVELEKIGLGDEELELE----------NTGAAIDTGTSLIALPSDLAEMLNAEIGAKK--------SWNGQYTVD 244 (320)
T ss_pred -CcEEEEEeCeEEECCEEeccC----------CCeEEEcCCcccccCCHHHHHHHHHHhCCcc--------ccCCcEEee
Confidence 468999999999999877532 2569999999999999999999988774321 122345567
Q ss_pred cccccCCCccccCeEEEEEcCCcEEEcCCCCceEEeCCceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeCCCC
Q 011566 394 CFDISGKKSVYLPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLAND 473 (483)
Q Consensus 394 C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~ 473 (483)
|+.. ..+|.|+|+| +|++|.||+++|+.+. ...|++.+...+. ....+..||||++|||++|+|||++++
T Consensus 245 C~~~-----~~~P~i~f~f-~g~~~~i~~~~y~~~~--~g~C~~~~~~~~~--~~~~~~~~ilG~~fl~~~y~vfD~~~~ 314 (320)
T cd05488 245 CSKV-----DSLPDLTFNF-DGYNFTLGPFDYTLEV--SGSCISAFTGMDF--PEPVGPLAIVGDAFLRKYYSVYDLGNN 314 (320)
T ss_pred cccc-----ccCCCEEEEE-CCEEEEECHHHheecC--CCeEEEEEEECcC--CCCCCCeEEEchHHhhheEEEEeCCCC
Confidence 8764 5789999999 8999999999999854 3579998875432 111234799999999999999999999
Q ss_pred EEEEEe
Q 011566 474 RFGFAK 479 (483)
Q Consensus 474 ~igfa~ 479 (483)
|||||+
T Consensus 315 ~iG~a~ 320 (320)
T cd05488 315 AVGLAK 320 (320)
T ss_pred EEeecC
Confidence 999996
No 11
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.2e-53 Score=424.77 Aligned_cols=300 Identities=24% Similarity=0.375 Sum_probs=245.2
Q ss_pred cccEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCcCCCCCCCCC
Q 011566 101 YGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPN 180 (483)
Q Consensus 101 ~~~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c~~~~~~~ 180 (483)
|..|+++|.||||||+ +.|+|||||+++||+|. .|..+ .|..++.|+|++|+||+...|
T Consensus 1 ~~~y~~~i~iGtP~q~-~~v~~DTGS~~~wv~~~---~C~~~-----~C~~~~~f~~~~SsT~~~~~~------------ 59 (318)
T cd05477 1 DMSYYGEISIGTPPQN-FLVLFDTGSSNLWVPSV---LCQSQ-----ACTNHTKFNPSQSSTYSTNGE------------ 59 (318)
T ss_pred CcEEEEEEEECCCCcE-EEEEEeCCCccEEEccC---CCCCc-----cccccCCCCcccCCCceECCc------------
Confidence 3689999999999999 99999999999999998 88642 234478999999999987542
Q ss_pred CCCCCCCCCCCCCCCCCCCCcceeeccceeEEEEEEEEEEEeCCcCcCceeeeccccCC------CCCceEeecCCCCC-
Q 011566 181 VESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSD------RQPAGIAGFGRSSE- 253 (483)
Q Consensus 181 ~~~~c~~c~~~~~~c~~~c~~~~~~Yg~g~~~G~~~~D~v~~~~~~~~~~~fg~~~~~~------~~~~GIlGLg~~~~- 253 (483)
.|++.|++|++.|.+++|+|++++..++++.|||++... ...+||||||++..
T Consensus 60 --------------------~~~~~Yg~Gs~~G~~~~D~i~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s 119 (318)
T cd05477 60 --------------------TFSLQYGSGSLTGIFGYDTVTVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSIS 119 (318)
T ss_pred --------------------EEEEEECCcEEEEEEEeeEEEECCEEEcCEEEEEEEecccccccccceeeEeecCccccc
Confidence 899999999999999999999999999999999998542 23499999998653
Q ss_pred -----Cccccc------ccceeeeecccCcCCCCCCccceEEccCCCCCCCCCCCceeeeceeCCCCCCCCCCcceeEEe
Q 011566 254 -----SLPSQL------GLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGL 322 (483)
Q Consensus 254 -----S~~~Ql------~~~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~w~v~l 322 (483)
++++|| ..++||+||.++. ...+|.|+|||+|+++ +.+++.|+|+.. ..+|.|++
T Consensus 120 ~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~----~~~~g~l~fGg~d~~~-~~g~l~~~pv~~---------~~~w~v~l 185 (318)
T cd05477 120 AGGATTVMQGMMQQNLLQAPIFSFYLSGQQ----GQQGGELVFGGVDNNL-YTGQIYWTPVTS---------ETYWQIGI 185 (318)
T ss_pred ccCCCCHHHHHHhcCCcCCCEEEEEEcCCC----CCCCCEEEEcccCHHH-cCCceEEEecCC---------ceEEEEEe
Confidence 344444 3489999998641 2346899999999998 999999999975 57999999
Q ss_pred eEEEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCccCcccccCCCc
Q 011566 323 RQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKS 402 (483)
Q Consensus 323 ~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 402 (483)
++|+|+++.+.+. .....+||||||++++||++++++|++++..... ..+.+.++|+..
T Consensus 186 ~~i~v~g~~~~~~--------~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~--------~~~~~~~~C~~~----- 244 (318)
T cd05477 186 QGFQINGQATGWC--------SQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQD--------QYGQYVVNCNNI----- 244 (318)
T ss_pred eEEEECCEEeccc--------CCCceeeECCCCccEECCHHHHHHHHHHhCCccc--------cCCCEEEeCCcc-----
Confidence 9999999887532 1235799999999999999999999988865422 224556788865
Q ss_pred cccCeEEEEEcCCcEEEcCCCCceEEeCCceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeCCCCEEEEEeC
Q 011566 403 VYLPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAKQ 480 (483)
Q Consensus 403 ~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~igfa~~ 480 (483)
..+|.|+|+| +|+++.||+++|+... ...|++.+...... .......||||++|||++|+|||++++|||||++
T Consensus 245 ~~~p~l~~~f-~g~~~~v~~~~y~~~~--~~~C~~~i~~~~~~-~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 245 QNLPTLTFTI-NGVSFPLPPSAYILQN--NGYCTVGIEPTYLP-SQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred ccCCcEEEEE-CCEEEEECHHHeEecC--CCeEEEEEEecccC-CCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 6789999999 8899999999999865 45799887643210 1112346999999999999999999999999986
No 12
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=2.2e-53 Score=424.28 Aligned_cols=308 Identities=26% Similarity=0.413 Sum_probs=249.8
Q ss_pred ccccccCcccEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCcCC
Q 011566 94 TPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKC 173 (483)
Q Consensus 94 ~~l~~~~~~~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c 173 (483)
.+|.++.+..|+++|+||||+|+ +.|+|||||+++||+|. .|..|. ..|..++.|+|++|+|++...|
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~-~~v~~DTGSs~~Wv~~~---~C~~~~---~~c~~~~~y~~~~Sst~~~~~~----- 69 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQS-FKVVFDTGSSNLWVPSK---KCSWTN---IACLLHNKYDSTKSSTYKKNGT----- 69 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcE-EEEEEcCCCccEEEecC---CCCCCC---ccccCCCeECCcCCCCeEECCe-----
Confidence 35788888999999999999999 99999999999999998 886432 1233467899999999987553
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeccceeEEEEEEEEEEEeCCcCcCceeeeccccCC------CCCceEee
Q 011566 174 SWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSD------RQPAGIAG 247 (483)
Q Consensus 174 ~~~~~~~~~~~c~~c~~~~~~c~~~c~~~~~~Yg~g~~~G~~~~D~v~~~~~~~~~~~fg~~~~~~------~~~~GIlG 247 (483)
.|.+.|++|++.|.+++|+|+|++..++++.|||+.... ...+||||
T Consensus 70 ---------------------------~~~i~Y~~g~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilG 122 (329)
T cd05485 70 ---------------------------EFAIQYGSGSLSGFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILG 122 (329)
T ss_pred ---------------------------EEEEEECCceEEEEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEE
Confidence 899999999999999999999999999999999986432 22499999
Q ss_pred cCCCCCCc----------ccc--cccceeeeecccCcCCCCCCccceEEccCCCCCCCCCCCceeeeceeCCCCCCCCCC
Q 011566 248 FGRSSESL----------PSQ--LGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFG 315 (483)
Q Consensus 248 Lg~~~~S~----------~~Q--l~~~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~ 315 (483)
||++..+. .+| +..+.||+||.+.. ....+|.|+|||+|+++ +.|+++|+|+.. .
T Consensus 123 Lg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~---~~~~~G~l~fGg~d~~~-~~g~l~~~p~~~---------~ 189 (329)
T cd05485 123 MGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDP---SAKEGGELILGGSDPKH-YTGNFTYLPVTR---------K 189 (329)
T ss_pred cCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCC---CCCCCcEEEEcccCHHH-cccceEEEEcCC---------c
Confidence 99987664 222 23489999998631 22346899999999988 899999999965 5
Q ss_pred cceeEEeeEEEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCccCcc
Q 011566 316 EFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCF 395 (483)
Q Consensus 316 ~~w~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~ 395 (483)
.+|.|.+++++|+++.+. .....+||||||++++||++++++|.+++.+.. ...+.+.++|+
T Consensus 190 ~~~~v~~~~i~v~~~~~~----------~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~--------~~~~~~~~~C~ 251 (329)
T cd05485 190 GYWQFKMDSVSVGEGEFC----------SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAKP--------IIGGEYMVNCS 251 (329)
T ss_pred eEEEEEeeEEEECCeeec----------CCCcEEEEccCCcceeCCHHHHHHHHHHhCCcc--------ccCCcEEEecc
Confidence 799999999999997653 123579999999999999999999988875421 11234567887
Q ss_pred cccCCCccccCeEEEEEcCCcEEEcCCCCceEEeCC--ceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeCCCC
Q 011566 396 DISGKKSVYLPELILKFKGGAKMALPPENYFALVGN--EVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLAND 473 (483)
Q Consensus 396 ~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~--~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~ 473 (483)
.. ..+|+|+|+| ||+.+.|++++|+++... ...|++.+...+. ....++.||||++|||++|+|||++++
T Consensus 252 ~~-----~~~p~i~f~f-gg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~--~~~~~~~~IlG~~fl~~~y~vFD~~~~ 323 (329)
T cd05485 252 AI-----PSLPDITFVL-GGKSFSLTGKDYVLKVTQMGQTICLSGFMGIDI--PPPAGPLWILGDVFIGKYYTEFDLGNN 323 (329)
T ss_pred cc-----ccCCcEEEEE-CCEEeEEChHHeEEEecCCCCCEEeeeEEECcC--CCCCCCeEEEchHHhccceEEEeCCCC
Confidence 64 5679999999 899999999999987643 4689987764332 112345699999999999999999999
Q ss_pred EEEEEe
Q 011566 474 RFGFAK 479 (483)
Q Consensus 474 ~igfa~ 479 (483)
|||||+
T Consensus 324 ~ig~a~ 329 (329)
T cd05485 324 RVGFAT 329 (329)
T ss_pred EEeecC
Confidence 999985
No 13
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=8.8e-53 Score=419.58 Aligned_cols=290 Identities=28% Similarity=0.519 Sum_probs=235.8
Q ss_pred ccEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCcCCCCCCCCCC
Q 011566 102 GGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNV 181 (483)
Q Consensus 102 ~~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c~~~~~~~~ 181 (483)
+.|+++|+||||+|+ +.|+|||||+++||+|. +|..|.. ...+.|+|++|+|++.+.|.+..|..
T Consensus 2 ~~Y~~~i~vGtP~Q~-~~v~~DTGS~~~wv~~~---~C~~c~~-----~~~~~y~~~~Sst~~~~~C~~~~c~~------ 66 (326)
T cd06096 2 AYYFIDIFIGNPPQK-QSLILDTGSSSLSFPCS---QCKNCGI-----HMEPPYNLNNSITSSILYCDCNKCCY------ 66 (326)
T ss_pred ceEEEEEEecCCCeE-EEEEEeCCCCceEEecC---CCCCcCC-----CCCCCcCcccccccccccCCCccccc------
Confidence 689999999999999 99999999999999999 9999865 33679999999999999999988842
Q ss_pred CCCCCCCCCCCCCCCCCCCcceeecccee-EEEEEEEEEEEeCCcCcC-------ceeeeccccCC-----CCCceEeec
Q 011566 182 ESRCKGCSPRNKTCPLACPSYLLQYGLGF-TAGLLLSETLRFPSKTVP-------NFLAGCSILSD-----RQPAGIAGF 248 (483)
Q Consensus 182 ~~~c~~c~~~~~~c~~~c~~~~~~Yg~g~-~~G~~~~D~v~~~~~~~~-------~~~fg~~~~~~-----~~~~GIlGL 248 (483)
|..| .++.| .|.+.|++|+ +.|.+++|+|+|++..+. ++.|||+.... ...+|||||
T Consensus 67 ---~~~~--~~~~~-----~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGL 136 (326)
T cd06096 67 ---CLSC--LNNKC-----EYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGL 136 (326)
T ss_pred ---cCcC--CCCcC-----cEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEc
Confidence 1112 22345 9999999998 999999999999987653 47899987543 234999999
Q ss_pred CCCCCC-cc-------cc--cc--cceeeeecccCcCCCCCCccceEEccCCCCCCCCC----------CCceeeeceeC
Q 011566 249 GRSSES-LP-------SQ--LG--LKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKT----------PGLSYTPFYKN 306 (483)
Q Consensus 249 g~~~~S-~~-------~Q--l~--~~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~----------g~l~~~p~~~~ 306 (483)
|+...+ +. .| .. .++||+||.+ .+|.|+|||+|+++ +. +++.|+|+..
T Consensus 137 g~~~~~~~~~~~~~l~~~~~~~~~~~~FS~~l~~--------~~G~l~~Gg~d~~~-~~~~~~~~~~~~~~~~~~p~~~- 206 (326)
T cd06096 137 SLTKNNGLPTPIILLFTKRPKLKKDKIFSICLSE--------DGGELTIGGYDKDY-TVRNSSIGNNKVSKIVWTPITR- 206 (326)
T ss_pred cCCcccccCchhHHHHHhcccccCCceEEEEEcC--------CCeEEEECccChhh-hcccccccccccCCceEEeccC-
Confidence 997643 11 22 11 2899999986 25899999999988 65 7899999976
Q ss_pred CCCCCCCCCcceeEEeeEEEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCcccccc
Q 011566 307 PVGSSSAFGEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVE 386 (483)
Q Consensus 307 ~~~~~~~~~~~w~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~ 386 (483)
..+|.|.+++|+|+++..... ......+||||||++++||+++|++|.+++
T Consensus 207 --------~~~y~v~l~~i~vg~~~~~~~-------~~~~~~aivDSGTs~~~lp~~~~~~l~~~~-------------- 257 (326)
T cd06096 207 --------KYYYYVKLEGLSVYGTTSNSG-------NTKGLGMLVDSGSTLSHFPEDLYNKINNFF-------------- 257 (326)
T ss_pred --------CceEEEEEEEEEEccccccee-------cccCCCEEEeCCCCcccCCHHHHHHHHhhc--------------
Confidence 468999999999998761110 123478999999999999999999887654
Q ss_pred ccCCccCcccccCCCccccCeEEEEEcCCcEEEcCCCCceEEeCCceEEEEEEecCCCCCCCCCCCceeeCccceeeeEE
Q 011566 387 KKSGLRPCFDISGKKSVYLPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYL 466 (483)
Q Consensus 387 ~~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yv 466 (483)
|+|+|+|.+|++|+++|++|++...+.. |...+... ...+|||++|||++|+
T Consensus 258 -------------------P~i~~~f~~g~~~~i~p~~y~~~~~~~~-c~~~~~~~--------~~~~ILG~~flr~~y~ 309 (326)
T cd06096 258 -------------------PTITIIFENNLKIDWKPSSYLYKKESFW-CKGGEKSV--------SNKPILGASFFKNKQI 309 (326)
T ss_pred -------------------CcEEEEEcCCcEEEECHHHhccccCCce-EEEEEecC--------CCceEEChHHhcCcEE
Confidence 7899999558999999999998765443 55544321 2469999999999999
Q ss_pred EEeCCCCEEEEEeCCCC
Q 011566 467 EFDLANDRFGFAKQKCA 483 (483)
Q Consensus 467 vfD~~~~~igfa~~~C~ 483 (483)
|||++++|||||+++|+
T Consensus 310 vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 310 IFDLDNNRIGFVESNCP 326 (326)
T ss_pred EEECcCCEEeeEcCCCC
Confidence 99999999999999996
No 14
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=2.1e-52 Score=428.03 Aligned_cols=302 Identities=20% Similarity=0.279 Sum_probs=243.7
Q ss_pred cccccccccCcccEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCC
Q 011566 91 LIKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQN 170 (483)
Q Consensus 91 ~~~~~l~~~~~~~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~ 170 (483)
...++|.++.+.+|+++|+||||||+ +.|+|||||+++||+|. .|..| .|..++.|||++|+||+...|
T Consensus 127 ~~~v~L~n~~n~~Y~~~I~IGTP~Q~-f~Vi~DTGSsdlWVps~---~C~~~-----~C~~~~~yd~s~SsT~~~~~~-- 195 (453)
T PTZ00147 127 FDNVELKDLANVMSYGEAKLGDNGQK-FNFIFDTGSANLWVPSI---KCTTE-----GCETKNLYDSSKSKTYEKDGT-- 195 (453)
T ss_pred CCeeeccccCCCEEEEEEEECCCCeE-EEEEEeCCCCcEEEeec---CCCcc-----cccCCCccCCccCcceEECCC--
Confidence 45678888888999999999999999 99999999999999998 88642 234478999999999987652
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeccceeEEEEEEEEEEEeCCcCcCceeeeccccCC--------CCC
Q 011566 171 PKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSD--------RQP 242 (483)
Q Consensus 171 ~~c~~~~~~~~~~~c~~c~~~~~~c~~~c~~~~~~Yg~g~~~G~~~~D~v~~~~~~~~~~~fg~~~~~~--------~~~ 242 (483)
.|.+.||+|++.|.+++|+|++|+.+++ ..|+++.... ...
T Consensus 196 ------------------------------~f~i~Yg~GsvsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~ 244 (453)
T PTZ00147 196 ------------------------------KVEMNYVSGTVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDF 244 (453)
T ss_pred ------------------------------EEEEEeCCCCEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccc
Confidence 8999999999999999999999999887 5788765321 134
Q ss_pred ceEeecCCCCCCcc------cc------cccceeeeecccCcCCCCCCccceEEccCCCCCCCCCCCceeeeceeCCCCC
Q 011566 243 AGIAGFGRSSESLP------SQ------LGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGS 310 (483)
Q Consensus 243 ~GIlGLg~~~~S~~------~Q------l~~~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~ 310 (483)
+||||||++.++.. .+ +..++||+||.+. ....|.|+|||+|+++ +.|++.|+|+..
T Consensus 245 DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~-----~~~~G~L~fGGiD~~k-y~G~l~y~pl~~----- 313 (453)
T PTZ00147 245 DGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPE-----DKHKGYLTIGGIEERF-YEGPLTYEKLNH----- 313 (453)
T ss_pred cceecccCCccccccCCCHHHHHHHcCCCCccEEEEEecCC-----CCCCeEEEECCcChhh-cCCceEEEEcCC-----
Confidence 99999999876532 22 3347999999863 2247899999999999 999999999964
Q ss_pred CCCCCcceeEEeeEEEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCC
Q 011566 311 SSAFGEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSG 390 (483)
Q Consensus 311 ~~~~~~~w~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 390 (483)
..+|.|.++ +.+|+... ....+||||||+++++|+++++++++++..... .....+
T Consensus 314 ----~~~W~V~l~-~~vg~~~~------------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~-------~~~~~y 369 (453)
T PTZ00147 314 ----DLYWQVDLD-VHFGNVSS------------EKANVIVDSGTSVITVPTEFLNKFVESLDVFKV-------PFLPLY 369 (453)
T ss_pred ----CceEEEEEE-EEECCEec------------CceeEEECCCCchhcCCHHHHHHHHHHhCCeec-------CCCCeE
Confidence 568999998 47776431 136799999999999999999999988754211 112335
Q ss_pred ccCcccccCCCccccCeEEEEEcCCcEEEcCCCCceEEeCC--ceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEE
Q 011566 391 LRPCFDISGKKSVYLPELILKFKGGAKMALPPENYFALVGN--EVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEF 468 (483)
Q Consensus 391 ~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~--~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvf 468 (483)
.++|+. ..+|+|+|+| +|+.++|+|++|+.+..+ ...|++.+...+. ..+.||||++|||++|+||
T Consensus 370 ~~~C~~------~~lP~~~f~f-~g~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~-----~~~~~ILGd~FLr~~YtVF 437 (453)
T PTZ00147 370 VTTCNN------TKLPTLEFRS-PNKVYTLEPEYYLQPIEDIGSALCMLNIIPIDL-----EKNTFILGDPFMRKYFTVF 437 (453)
T ss_pred EEeCCC------CCCCeEEEEE-CCEEEEECHHHheeccccCCCcEEEEEEEECCC-----CCCCEEECHHHhccEEEEE
Confidence 678985 4579999999 789999999999976432 4579987765331 1246999999999999999
Q ss_pred eCCCCEEEEEeCC
Q 011566 469 DLANDRFGFAKQK 481 (483)
Q Consensus 469 D~~~~~igfa~~~ 481 (483)
|++++|||||+++
T Consensus 438 D~~n~rIGfA~a~ 450 (453)
T PTZ00147 438 DYDNHTVGFALAK 450 (453)
T ss_pred ECCCCEEEEEEec
Confidence 9999999999985
No 15
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.2e-51 Score=421.44 Aligned_cols=302 Identities=21% Similarity=0.276 Sum_probs=242.1
Q ss_pred cccccccccCcccEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCC
Q 011566 91 LIKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQN 170 (483)
Q Consensus 91 ~~~~~l~~~~~~~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~ 170 (483)
...+++.++.+.+|+++|+||||||+ +.|+|||||+++||+|. .|..+ .|..++.|+|++|+|++...|
T Consensus 126 ~~~~~l~d~~n~~Yy~~i~IGTP~Q~-f~vi~DTGSsdlWV~s~---~C~~~-----~C~~~~~yd~s~SsT~~~~~~-- 194 (450)
T PTZ00013 126 NDVIELDDVANIMFYGEGEVGDNHQK-FMLIFDTGSANLWVPSK---KCDSI-----GCSIKNLYDSSKSKSYEKDGT-- 194 (450)
T ss_pred CCceeeeccCCCEEEEEEEECCCCeE-EEEEEeCCCCceEEecc---cCCcc-----ccccCCCccCccCcccccCCc--
Confidence 35667878888899999999999999 99999999999999998 88631 134478999999999987552
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeccceeEEEEEEEEEEEeCCcCcCceeeeccccCC--------CCC
Q 011566 171 PKCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSD--------RQP 242 (483)
Q Consensus 171 ~~c~~~~~~~~~~~c~~c~~~~~~c~~~c~~~~~~Yg~g~~~G~~~~D~v~~~~~~~~~~~fg~~~~~~--------~~~ 242 (483)
.+.+.||+|++.|.+++|+|++|+.+++ ..|+++.... ...
T Consensus 195 ------------------------------~~~i~YG~Gsv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~ 243 (450)
T PTZ00013 195 ------------------------------KVDITYGSGTVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEF 243 (450)
T ss_pred ------------------------------EEEEEECCceEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccc
Confidence 8999999999999999999999999887 5788765321 234
Q ss_pred ceEeecCCCCCCc------ccc------cccceeeeecccCcCCCCCCccceEEccCCCCCCCCCCCceeeeceeCCCCC
Q 011566 243 AGIAGFGRSSESL------PSQ------LGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGS 310 (483)
Q Consensus 243 ~GIlGLg~~~~S~------~~Q------l~~~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~ 310 (483)
+||||||++.++. +.| +..++||+||... ...+|.|+|||+|+++ +.|+++|+|+..
T Consensus 244 dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~-----~~~~G~L~fGGiD~~~-y~G~L~y~pv~~----- 312 (450)
T PTZ00013 244 DGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVH-----DVHAGYLTIGGIEEKF-YEGNITYEKLNH----- 312 (450)
T ss_pred cceecccCCccccccCCCHHHHHHhccCcCCcEEEEEecCC-----CCCCCEEEECCcCccc-cccceEEEEcCc-----
Confidence 9999999987653 223 3347899999863 2247899999999999 999999999964
Q ss_pred CCCCCcceeEEeeEEEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCC
Q 011566 311 SSAFGEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSG 390 (483)
Q Consensus 311 ~~~~~~~w~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 390 (483)
..+|.|.++ +.+|.... ....+||||||+++++|+++++++.+++..... ...+.+
T Consensus 313 ----~~yW~I~l~-v~~G~~~~------------~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~-------~~~~~y 368 (450)
T PTZ00013 313 ----DLYWQIDLD-VHFGKQTM------------QKANVIVDSGTTTITAPSEFLNKFFANLNVIKV-------PFLPFY 368 (450)
T ss_pred ----CceEEEEEE-EEECceec------------cccceEECCCCccccCCHHHHHHHHHHhCCeec-------CCCCeE
Confidence 579999998 66765432 126799999999999999999999887754211 112345
Q ss_pred ccCcccccCCCccccCeEEEEEcCCcEEEcCCCCceEEeC--CceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEE
Q 011566 391 LRPCFDISGKKSVYLPELILKFKGGAKMALPPENYFALVG--NEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEF 468 (483)
Q Consensus 391 ~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~--~~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvf 468 (483)
..+|+. ..+|+|+|+| +|++++|+|++|+.+.. ++..|+..+...+ ...+.||||++|||++|+||
T Consensus 369 ~~~C~~------~~lP~i~F~~-~g~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~-----~~~~~~ILGd~FLr~~Y~VF 436 (450)
T PTZ00013 369 VTTCDN------KEMPTLEFKS-ANNTYTLEPEYYMNPLLDVDDTLCMITMLPVD-----IDDNTFILGDPFMRKYFTVF 436 (450)
T ss_pred EeecCC------CCCCeEEEEE-CCEEEEECHHHheehhccCCCCeeEEEEEECC-----CCCCCEEECHHHhccEEEEE
Confidence 678874 4679999999 78999999999987532 2468998886532 12346999999999999999
Q ss_pred eCCCCEEEEEeCC
Q 011566 469 DLANDRFGFAKQK 481 (483)
Q Consensus 469 D~~~~~igfa~~~ 481 (483)
|++++|||||+++
T Consensus 437 D~~n~rIGfA~a~ 449 (450)
T PTZ00013 437 DYDKESVGFAIAK 449 (450)
T ss_pred ECCCCEEEEEEeC
Confidence 9999999999985
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=4.3e-51 Score=413.57 Aligned_cols=314 Identities=21% Similarity=0.281 Sum_probs=236.4
Q ss_pred ccEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCcCCCCCCCCCC
Q 011566 102 GGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNV 181 (483)
Q Consensus 102 ~~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c~~~~~~~~ 181 (483)
..|+++|.||||+|+ +.|+|||||+++||+|. +|..| ++.|+|++|+||+...|
T Consensus 2 ~~Y~~~i~iGtP~Q~-~~v~~DTGSs~lWv~~~---~~~~~---------~~~f~~~~SsT~~~~~~------------- 55 (364)
T cd05473 2 QGYYIEMLIGTPPQK-LNILVDTGSSNFAVAAA---PHPFI---------HTYFHRELSSTYRDLGK------------- 55 (364)
T ss_pred CceEEEEEecCCCce-EEEEEecCCcceEEEcC---CCccc---------cccCCchhCcCcccCCc-------------
Confidence 369999999999999 99999999999999988 77332 57899999999998663
Q ss_pred CCCCCCCCCCCCCCCCCCCcceeeccceeEEEEEEEEEEEeCCcCcCc--eeeeccccCC------CCCceEeecCCCCC
Q 011566 182 ESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPN--FLAGCSILSD------RQPAGIAGFGRSSE 253 (483)
Q Consensus 182 ~~~c~~c~~~~~~c~~~c~~~~~~Yg~g~~~G~~~~D~v~~~~~~~~~--~~fg~~~~~~------~~~~GIlGLg~~~~ 253 (483)
.|++.||+|++.|.+++|+|+|++..... +.|+++.... ...+||||||++.+
T Consensus 56 -------------------~~~i~Yg~Gs~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l 116 (364)
T cd05473 56 -------------------GVTVPYTQGSWEGELGTDLVSIPKGPNVTFRANIAAITESENFFLNGSNWEGILGLAYAEL 116 (364)
T ss_pred -------------------eEEEEECcceEEEEEEEEEEEECCCCccceEEeeEEEeccccceecccccceeeeeccccc
Confidence 89999999999999999999998642111 2244543221 13499999999876
Q ss_pred C------------ccccccc-ceeeeecccCcCC----CCCCccceEEccCCCCCCCCCCCceeeeceeCCCCCCCCCCc
Q 011566 254 S------------LPSQLGL-KKFSYCLLSRKFD----DAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGE 316 (483)
Q Consensus 254 S------------~~~Ql~~-~~Fs~~L~~~~~~----~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~ 316 (483)
+ +++|... ++||+||...... .....+|.|+|||+|+++ +.|++.|+|+.. ..
T Consensus 117 ~~~~~~~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~-~~g~l~~~p~~~---------~~ 186 (364)
T cd05473 117 ARPDSSVEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSL-YKGDIWYTPIRE---------EW 186 (364)
T ss_pred ccCCCCCCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhh-cCCCceEEecCc---------ce
Confidence 3 4455443 5899988532110 112347899999999998 999999999976 46
Q ss_pred ceeEEeeEEEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCccCccc
Q 011566 317 FYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFD 396 (483)
Q Consensus 317 ~w~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 396 (483)
+|.|.+++|+|+++.+.++...+ ....+||||||++++||+++|++|++++.++... ..........+.++|+.
T Consensus 187 ~~~v~l~~i~vg~~~~~~~~~~~-----~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~C~~ 260 (364)
T cd05473 187 YYEVIILKLEVGGQSLNLDCKEY-----NYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLI-EDFPDGFWLGSQLACWQ 260 (364)
T ss_pred eEEEEEEEEEECCEecccccccc-----cCccEEEeCCCcceeCCHHHHHHHHHHHHhhccc-ccCCccccCcceeeccc
Confidence 89999999999999887543221 1246999999999999999999999999887532 11111111123468987
Q ss_pred ccCCCccccCeEEEEEcCC-----cEEEcCCCCceEEeC---CceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEE
Q 011566 397 ISGKKSVYLPELILKFKGG-----AKMALPPENYFALVG---NEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEF 468 (483)
Q Consensus 397 ~~~~~~~~~P~i~f~f~gg-----~~~~l~~~~y~~~~~---~~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvf 468 (483)
........+|+|+|+|+|+ .++.|+|++|+.... ....|+.+.... ..+.||||+.|||++|+||
T Consensus 261 ~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~-------~~~~~ILG~~flr~~yvvf 333 (364)
T cd05473 261 KGTTPWEIFPKISIYLRDENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQ-------STNGTVIGAVIMEGFYVVF 333 (364)
T ss_pred ccCchHhhCCcEEEEEccCCCCceEEEEECHHHhhhhhccCCCcceeeEEeeec-------CCCceEEeeeeEcceEEEE
Confidence 5332224689999999542 478999999987542 245798632211 1235999999999999999
Q ss_pred eCCCCEEEEEeCCCC
Q 011566 469 DLANDRFGFAKQKCA 483 (483)
Q Consensus 469 D~~~~~igfa~~~C~ 483 (483)
|++++|||||+++|+
T Consensus 334 D~~~~rIGfa~~~C~ 348 (364)
T cd05473 334 DRANKRVGFAVSTCA 348 (364)
T ss_pred ECCCCEEeeEecccc
Confidence 999999999999995
No 17
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.2e-50 Score=407.43 Aligned_cols=326 Identities=26% Similarity=0.449 Sum_probs=251.2
Q ss_pred eCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCcCCCCCCCCCCCCCCC-CC
Q 011566 110 FGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNVESRCK-GC 188 (483)
Q Consensus 110 iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c~~~~~~~~~~~c~-~c 188 (483)
+|+|--+-+.|+|||||+++||+|. + .+|+||+.++|+++.|+..... .|. .|
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~---~-------------------~~sst~~~~~C~s~~C~~~~~~----~~~~~~ 55 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD---A-------------------GHSSTYQTVPCSSSVCSLANRY----HCPGTC 55 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC---C-------------------CCcCCCCccCcCChhhcccccc----CCCccc
Confidence 4666333279999999999999988 3 2588999999999999865432 222 22
Q ss_pred CC-CCCCCC-CCCCcceee-cccee-EEEEEEEEEEEeCC--------cCcCceeeeccccCC-----CCCceEeecCCC
Q 011566 189 SP-RNKTCP-LACPSYLLQ-YGLGF-TAGLLLSETLRFPS--------KTVPNFLAGCSILSD-----RQPAGIAGFGRS 251 (483)
Q Consensus 189 ~~-~~~~c~-~~c~~~~~~-Yg~g~-~~G~~~~D~v~~~~--------~~~~~~~fg~~~~~~-----~~~~GIlGLg~~ 251 (483)
.. ++..|. +.| .|... |++|+ +.|++++|+|+|+. .+++++.|||+.... ...+||||||++
T Consensus 56 ~~~~~~~c~~~~C-~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~ 134 (362)
T cd05489 56 GGAPGPGCGNNTC-TAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRS 134 (362)
T ss_pred cCCCCCCCCCCcC-eeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCC
Confidence 11 122342 346 77654 88896 99999999999964 268899999997542 124999999999
Q ss_pred CCCccccccc-----ceeeeecccCcCCCCCCccceEEccCCCCCCCC------CCCceeeeceeCCCCCCCCCCcceeE
Q 011566 252 SESLPSQLGL-----KKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSK------TPGLSYTPFYKNPVGSSSAFGEFYYV 320 (483)
Q Consensus 252 ~~S~~~Ql~~-----~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~------~g~l~~~p~~~~~~~~~~~~~~~w~v 320 (483)
.+|++.||.. ++|||||.++ ...+|.|+||+.++.+ + .+.++|+|+..++.. ..+|+|
T Consensus 135 ~lSl~sql~~~~~~~~~FS~CL~~~-----~~~~g~l~fG~~~~~~-~~~~~~~~~~~~~tPl~~~~~~-----~~~Y~v 203 (362)
T cd05489 135 PLSLPAQLASAFGVARKFALCLPSS-----PGGPGVAIFGGGPYYL-FPPPIDLSKSLSYTPLLTNPRK-----SGEYYI 203 (362)
T ss_pred ccchHHHhhhhcCCCcceEEEeCCC-----CCCCeeEEECCCchhc-ccccccccCCccccccccCCCC-----CCceEE
Confidence 9999999865 7899999863 1247899999998765 4 378999999986421 578999
Q ss_pred EeeEEEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCccCcccccC-
Q 011566 321 GLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISG- 399 (483)
Q Consensus 321 ~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~- 399 (483)
+|++|+||++.+.+++..+.+...+.+++||||||++++||+++|++|.++|.+++........ .......||....
T Consensus 204 ~l~~IsVg~~~l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~--~~~~~~~C~~~~~~ 281 (362)
T cd05489 204 GVTSIAVNGHAVPLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPA--AAVFPELCYPASAL 281 (362)
T ss_pred EEEEEEECCEECCCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCC--CCCCcCccccCCCc
Confidence 9999999999998877766655556678999999999999999999999999988764322211 1122368987542
Q ss_pred ---CCccccCeEEEEEcC-CcEEEcCCCCceEEeCCceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeCCCCEE
Q 011566 400 ---KKSVYLPELILKFKG-GAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRF 475 (483)
Q Consensus 400 ---~~~~~~P~i~f~f~g-g~~~~l~~~~y~~~~~~~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~i 475 (483)
.....+|+|+|+|.| |++|.|++++|+++..++..|++++.... ...+.||||+.|||++|++||++++||
T Consensus 282 ~~~~~~~~~P~it~~f~g~g~~~~l~~~ny~~~~~~~~~Cl~f~~~~~-----~~~~~~IlG~~~~~~~~vvyD~~~~ri 356 (362)
T cd05489 282 GNTRLGYAVPAIDLVLDGGGVNWTIFGANSMVQVKGGVACLAFVDGGS-----EPRPAVVIGGHQMEDNLLVFDLEKSRL 356 (362)
T ss_pred CCcccccccceEEEEEeCCCeEEEEcCCceEEEcCCCcEEEEEeeCCC-----CCCceEEEeeheecceEEEEECCCCEe
Confidence 113678999999965 69999999999998777778987764321 113579999999999999999999999
Q ss_pred EEEeC
Q 011566 476 GFAKQ 480 (483)
Q Consensus 476 gfa~~ 480 (483)
|||+.
T Consensus 357 Gfa~~ 361 (362)
T cd05489 357 GFSSS 361 (362)
T ss_pred ecccC
Confidence 99974
No 18
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=3.4e-49 Score=382.59 Aligned_cols=256 Identities=46% Similarity=0.833 Sum_probs=219.2
Q ss_pred cEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCcCCCCCCCCCCC
Q 011566 103 GYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNVE 182 (483)
Q Consensus 103 ~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c~~~~~~~~~ 182 (483)
+|+++|+||||||+ +.|+|||||+++||+| |
T Consensus 1 ~Y~~~i~iGtP~q~-~~v~~DTGSs~~wv~~--------~---------------------------------------- 31 (265)
T cd05476 1 EYLVTLSIGTPPQP-FSLIVDTGSDLTWTQC--------C---------------------------------------- 31 (265)
T ss_pred CeEEEEecCCCCcc-eEEEecCCCCCEEEcC--------C----------------------------------------
Confidence 59999999999999 9999999999999953 1
Q ss_pred CCCCCCCCCCCCCCCCCCcceeecccee-EEEEEEEEEEEeCCc--CcCceeeeccccCC----CCCceEeecCCCCCCc
Q 011566 183 SRCKGCSPRNKTCPLACPSYLLQYGLGF-TAGLLLSETLRFPSK--TVPNFLAGCSILSD----RQPAGIAGFGRSSESL 255 (483)
Q Consensus 183 ~~c~~c~~~~~~c~~~c~~~~~~Yg~g~-~~G~~~~D~v~~~~~--~~~~~~fg~~~~~~----~~~~GIlGLg~~~~S~ 255 (483)
.|.+.|++|+ +.|.+++|+|+|++. .++++.|||+.... ...+||||||+...|+
T Consensus 32 ------------------~~~~~Y~dg~~~~G~~~~D~v~~g~~~~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~ 93 (265)
T cd05476 32 ------------------SYEYSYGDGSSTSGVLATETFTFGDSSVSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSL 93 (265)
T ss_pred ------------------ceEeEeCCCceeeeeEEEEEEEecCCCCccCCEEEEecccccCCccCCCCEEEECCCCcccH
Confidence 7889999876 999999999999998 89999999998653 2349999999999999
Q ss_pred ccccccc--eeeeecccCcCCCCCCccceEEccCCCCCCCCCCCceeeeceeCCCCCCCCCCcceeEEeeEEEECcEEee
Q 011566 256 PSQLGLK--KFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGLRQIIVGSKHVK 333 (483)
Q Consensus 256 ~~Ql~~~--~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~i~vg~~~~~ 333 (483)
+.||... +||+||.+.. .....|.|+|||+|++ +.+++.|+|+..++. ...+|.|+|++|+|+++.+.
T Consensus 94 ~~ql~~~~~~Fs~~l~~~~---~~~~~G~l~fGg~d~~--~~~~l~~~p~~~~~~-----~~~~~~v~l~~i~v~~~~~~ 163 (265)
T cd05476 94 VSQLGSTGNKFSYCLVPHD---DTGGSSPLILGDAADL--GGSGVVYTPLVKNPA-----NPTYYYVNLEGISVGGKRLP 163 (265)
T ss_pred HHHhhcccCeeEEEccCCC---CCCCCCeEEECCcccc--cCCCceEeecccCCC-----CCCceEeeeEEEEECCEEec
Confidence 9999875 9999998732 1335789999999986 789999999987542 15789999999999999987
Q ss_pred eCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCccCcccccCCCccccCeEEEEEc
Q 011566 334 IPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSVYLPELILKFK 413 (483)
Q Consensus 334 ~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~ 413 (483)
++...+.........+||||||++++||+++| |+|+|+|+
T Consensus 164 ~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~~----------------------------------------P~i~~~f~ 203 (265)
T cd05476 164 IPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAY----------------------------------------PDLTLHFD 203 (265)
T ss_pred CCchhcccccCCCCcEEEeCCCcceEcCcccc----------------------------------------CCEEEEEC
Confidence 66544433334457899999999999999976 77999995
Q ss_pred CCcEEEcCCCCceEEeCCceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeCCCCEEEEEeCCC
Q 011566 414 GGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAKQKC 482 (483)
Q Consensus 414 gg~~~~l~~~~y~~~~~~~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~igfa~~~C 482 (483)
+|++|.+++++|+.....+..|++++... ..+.||||++|||++|++||.+++|||||+++|
T Consensus 204 ~~~~~~i~~~~y~~~~~~~~~C~~~~~~~-------~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 204 GGADLELPPENYFVDVGEGVVCLAILSSS-------SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CCCEEEeCcccEEEECCCCCEEEEEecCC-------CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 48999999999999766677999877531 245799999999999999999999999999999
No 19
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.9e-48 Score=378.70 Aligned_cols=253 Identities=27% Similarity=0.605 Sum_probs=207.9
Q ss_pred ccEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCcCCCCCCCCCC
Q 011566 102 GGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNV 181 (483)
Q Consensus 102 ~~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c~~~~~~~~ 181 (483)
+.|+++|.||||||+ +.|++||||+++||+|.. +|..|
T Consensus 1 ~~Y~~~i~iGtP~q~-~~v~~DTGS~~~Wv~c~~--~c~~c--------------------------------------- 38 (273)
T cd05475 1 GYYYVTINIGNPPKP-YFLDIDTGSDLTWLQCDA--PCTGC--------------------------------------- 38 (273)
T ss_pred CceEEEEEcCCCCee-EEEEEccCCCceEEeCCC--CCCCC---------------------------------------
Confidence 479999999999999 999999999999998841 45443
Q ss_pred CCCCCCCCCCCCCCCCCCCcceeecccee-EEEEEEEEEEEeCC----cCcCceeeeccccCC-------CCCceEeecC
Q 011566 182 ESRCKGCSPRNKTCPLACPSYLLQYGLGF-TAGLLLSETLRFPS----KTVPNFLAGCSILSD-------RQPAGIAGFG 249 (483)
Q Consensus 182 ~~~c~~c~~~~~~c~~~c~~~~~~Yg~g~-~~G~~~~D~v~~~~----~~~~~~~fg~~~~~~-------~~~~GIlGLg 249 (483)
.| .|.+.|++|+ +.|.+++|+|+|++ ..++++.|||+.... ...+||||||
T Consensus 39 ------------~c-----~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg 101 (273)
T cd05475 39 ------------QC-----DYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLG 101 (273)
T ss_pred ------------cC-----ccEeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECC
Confidence 12 8999999765 99999999999963 477899999986431 2349999999
Q ss_pred CCCCCccccccc-----ceeeeecccCcCCCCCCccceEEccCCCCCCCCCCCceeeeceeCCCCCCCCCCcceeEEeeE
Q 011566 250 RSSESLPSQLGL-----KKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGLRQ 324 (483)
Q Consensus 250 ~~~~S~~~Ql~~-----~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~ 324 (483)
++..++++||.. ++||+||.+. .+|.|+||+ ..+ +.+++.|+|+..++. ..+|.|++.+
T Consensus 102 ~~~~s~~~ql~~~~~i~~~Fs~~l~~~-------~~g~l~~G~--~~~-~~g~i~ytpl~~~~~------~~~y~v~l~~ 165 (273)
T cd05475 102 RGKISLPSQLASQGIIKNVIGHCLSSN-------GGGFLFFGD--DLV-PSSGVTWTPMRRESQ------KKHYSPGPAS 165 (273)
T ss_pred CCCCCHHHHHHhcCCcCceEEEEccCC-------CCeEEEECC--CCC-CCCCeeecccccCCC------CCeEEEeEeE
Confidence 999999998764 6899999762 357888874 445 678899999987531 4689999999
Q ss_pred EEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCccCcccccCCCccc
Q 011566 325 IIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSVY 404 (483)
Q Consensus 325 i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 404 (483)
|+||++... .....+||||||++++||+++|
T Consensus 166 i~vg~~~~~----------~~~~~~ivDTGTt~t~lp~~~y--------------------------------------- 196 (273)
T cd05475 166 LLFNGQPTG----------GKGLEVVFDSGSSYTYFNAQAY--------------------------------------- 196 (273)
T ss_pred EEECCEECc----------CCCceEEEECCCceEEcCCccc---------------------------------------
Confidence 999998532 2236799999999999999865
Q ss_pred cCeEEEEEcCC---cEEEcCCCCceEEeCCceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeCCCCEEEEEeCC
Q 011566 405 LPELILKFKGG---AKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAKQK 481 (483)
Q Consensus 405 ~P~i~f~f~gg---~~~~l~~~~y~~~~~~~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~igfa~~~ 481 (483)
+|+|+|+|+++ ++++||+++|+....++..|++++...+ ......||||+.|||++|+|||++++|||||+++
T Consensus 197 ~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~----~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~ 272 (273)
T cd05475 197 FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCLGILNGSE----IGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSD 272 (273)
T ss_pred cccEEEEECCCCceeEEEeCCCceEEEcCCCCEEEEEecCCC----cCCCceEEECceEEEeeEEEEECcCCEeCcccCC
Confidence 38899999443 7999999999987666678999986532 1223579999999999999999999999999999
Q ss_pred C
Q 011566 482 C 482 (483)
Q Consensus 482 C 482 (483)
|
T Consensus 273 C 273 (273)
T cd05475 273 C 273 (273)
T ss_pred C
Confidence 9
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.4e-48 Score=381.11 Aligned_cols=258 Identities=24% Similarity=0.346 Sum_probs=213.9
Q ss_pred EEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCcCCCCCCCCCCCC
Q 011566 104 YSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNVES 183 (483)
Q Consensus 104 Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c~~~~~~~~~~ 183 (483)
|+++|+||||||+ +.|+|||||+++||+|. .|..|.. ..++.|+|++|+|++...
T Consensus 1 Y~~~i~vGtP~Q~-~~v~~DTGS~~~wv~~~---~c~~~~~-----~~~~~y~~~~Sst~~~~~---------------- 55 (278)
T cd06097 1 YLTPVKIGTPPQT-LNLDLDTGSSDLWVFSS---ETPAAQQ-----GGHKLYDPSKSSTAKLLP---------------- 55 (278)
T ss_pred CeeeEEECCCCcE-EEEEEeCCCCceeEeeC---CCCchhh-----ccCCcCCCccCccceecC----------------
Confidence 8999999999999 99999999999999999 8988754 346789999999998653
Q ss_pred CCCCCCCCCCCCCCCCCcceeecccee-EEEEEEEEEEEeCCcCcCceeeeccccCC------CCCceEeecCCCCCCcc
Q 011566 184 RCKGCSPRNKTCPLACPSYLLQYGLGF-TAGLLLSETLRFPSKTVPNFLAGCSILSD------RQPAGIAGFGRSSESLP 256 (483)
Q Consensus 184 ~c~~c~~~~~~c~~~c~~~~~~Yg~g~-~~G~~~~D~v~~~~~~~~~~~fg~~~~~~------~~~~GIlGLg~~~~S~~ 256 (483)
.| .|.+.|++|+ +.|.+++|+|+|++.+++++.||+++... ...+||||||+...+..
T Consensus 56 ----------~~-----~~~i~Y~~G~~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~ 120 (278)
T cd06097 56 ----------GA-----TWSISYGDGSSASGIVYTDTVSIGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTV 120 (278)
T ss_pred ----------Cc-----EEEEEeCCCCeEEEEEEEEEEEECCEEECCeEEEEEeecCccccccccccceeeecccccccc
Confidence 12 8999999997 99999999999999999999999998543 24599999999876532
Q ss_pred -------------cccccceeeeecccCcCCCCCCccceEEccCCCCCCCCCCCceeeeceeCCCCCCCCCCcceeEEee
Q 011566 257 -------------SQLGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGLR 323 (483)
Q Consensus 257 -------------~Ql~~~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~ 323 (483)
+|+..+.||+||.+. ..|.|+|||+|+++ +.|+++|+|+... ..+|.|+++
T Consensus 121 ~~~~~~~~~~~l~~~~~~~~Fs~~l~~~-------~~G~l~fGg~D~~~-~~g~l~~~pi~~~--------~~~w~v~l~ 184 (278)
T cd06097 121 QPPKQKTFFENALSSLDAPLFTADLRKA-------APGFYTFGYIDESK-YKGEISWTPVDNS--------SGFWQFTST 184 (278)
T ss_pred ccCCCCCHHHHHHHhccCceEEEEecCC-------CCcEEEEeccChHH-cCCceEEEEccCC--------CcEEEEEEe
Confidence 233347999999752 46899999999998 9999999999763 468999999
Q ss_pred EEEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCccCcccccCCCcc
Q 011566 324 QIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSV 403 (483)
Q Consensus 324 ~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 403 (483)
+|+|+++.... .....+||||||+++++|++++++|.+++.+... +...+.+.++|..
T Consensus 185 ~i~v~~~~~~~---------~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~~------~~~~~~~~~~C~~------- 242 (278)
T cd06097 185 SYTVGGDAPWS---------RSGFSAIADTGTTLILLPDAIVEAYYSQVPGAYY------DSEYGGWVFPCDT------- 242 (278)
T ss_pred eEEECCcceee---------cCCceEEeecCCchhcCCHHHHHHHHHhCcCCcc------cCCCCEEEEECCC-------
Confidence 99999874322 1236799999999999999999999888843211 1123456678874
Q ss_pred ccCeEEEEEcCCcEEEcCCCCceEEeCCceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeCCCCEEEEEe
Q 011566 404 YLPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAK 479 (483)
Q Consensus 404 ~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~igfa~ 479 (483)
.+|+|+|+| .||||++|||++|+|||++|+|||||+
T Consensus 243 ~~P~i~f~~----------------------------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 243 TLPDLSFAV----------------------------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred CCCCEEEEE----------------------------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 279999999 299999999999999999999999996
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=2.6e-47 Score=375.52 Aligned_cols=272 Identities=25% Similarity=0.383 Sum_probs=225.6
Q ss_pred cEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCcCCCCCCCCCCC
Q 011566 103 GYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNVE 182 (483)
Q Consensus 103 ~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c~~~~~~~~~ 182 (483)
.|+++|.||||+|+ +.|+|||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~-~~v~~DTgS~~~wv~-------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQK-VTVLLDTGSSDLWVP-------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcE-EEEEEeCCCCcceee--------------------------------------------------
Confidence 69999999999999 999999999999995
Q ss_pred CCCCCCCCCCCCCCCCCCcceeecccee-EEEEEEEEEEEeCCcCcCceeeeccccCCCCCceEeecCCCCC--------
Q 011566 183 SRCKGCSPRNKTCPLACPSYLLQYGLGF-TAGLLLSETLRFPSKTVPNFLAGCSILSDRQPAGIAGFGRSSE-------- 253 (483)
Q Consensus 183 ~~c~~c~~~~~~c~~~c~~~~~~Yg~g~-~~G~~~~D~v~~~~~~~~~~~fg~~~~~~~~~~GIlGLg~~~~-------- 253 (483)
.|++.|++|+ +.|.+++|+|+|++.+++++.|||++... ..+||||||+...
T Consensus 31 ------------------~~~~~Y~~g~~~~G~~~~D~v~~g~~~~~~~~fg~~~~~~-~~~GilGLg~~~~~~~~~~~~ 91 (295)
T cd05474 31 ------------------DFSISYGDGTSASGTWGTDTVSIGGATVKNLQFAVANSTS-SDVGVLGIGLPGNEATYGTGY 91 (295)
T ss_pred ------------------eeEEEeccCCcEEEEEEEEEEEECCeEecceEEEEEecCC-CCcceeeECCCCCcccccCCC
Confidence 3678899965 99999999999999999999999998753 4599999999876
Q ss_pred ---Ccccccc------cceeeeecccCcCCCCCCccceEEccCCCCCCCCCCCceeeeceeCCCCCCCCCCcceeEEeeE
Q 011566 254 ---SLPSQLG------LKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGLRQ 324 (483)
Q Consensus 254 ---S~~~Ql~------~~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~ 324 (483)
+++.||. .+.||+||.+. ....|.|+|||+|+.+ +.+++.|+|+...+.. ....+|.|++++
T Consensus 92 ~~~s~~~~L~~~g~i~~~~Fsl~l~~~-----~~~~g~l~~Gg~d~~~-~~g~~~~~p~~~~~~~---~~~~~~~v~l~~ 162 (295)
T cd05474 92 TYPNFPIALKKQGLIKKNAYSLYLNDL-----DASTGSILFGGVDTAK-YSGDLVTLPIVNDNGG---SEPSELSVTLSS 162 (295)
T ss_pred cCCCHHHHHHHCCcccceEEEEEeCCC-----CCCceeEEEeeeccce-eeceeEEEeCcCcCCC---CCceEEEEEEEE
Confidence 4666653 37899999863 1246899999999988 9999999999875421 113789999999
Q ss_pred EEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCccCcccccCCCccc
Q 011566 325 IIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSVY 404 (483)
Q Consensus 325 i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 404 (483)
|+|+++.+..+.. .....++|||||++++||++++++|++++.+.... ..+.+..+|+.. ..
T Consensus 163 i~v~~~~~~~~~~------~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~-------~~~~~~~~C~~~-----~~ 224 (295)
T cd05474 163 ISVNGSSGNTTLL------SKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDS-------DEGLYVVDCDAK-----DD 224 (295)
T ss_pred EEEEcCCCccccc------CCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcC-------CCcEEEEeCCCC-----CC
Confidence 9999988654211 23478999999999999999999999998765331 134567899875 34
Q ss_pred cCeEEEEEcCCcEEEcCCCCceEEeC----CceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeCCCCEEEEEeC
Q 011566 405 LPELILKFKGGAKMALPPENYFALVG----NEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAKQ 480 (483)
Q Consensus 405 ~P~i~f~f~gg~~~~l~~~~y~~~~~----~~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~igfa~~ 480 (483)
|+|+|+| +|++++||+++|+.+.. ....|+..++..+ ...||||++|||++|++||.+++|||||+|
T Consensus 225 -p~i~f~f-~g~~~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~-------~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 225 -GSLTFNF-GGATISVPLSDLVLPASTDDGGDGACYLGIQPST-------SDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred -CEEEEEE-CCeEEEEEHHHhEeccccCCCCCCCeEEEEEeCC-------CCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 9999999 78999999999998764 2678988776432 146999999999999999999999999986
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2.1e-47 Score=379.87 Aligned_cols=296 Identities=27% Similarity=0.468 Sum_probs=244.3
Q ss_pred cEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCcCCCCCCCCCCC
Q 011566 103 GYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNVE 182 (483)
Q Consensus 103 ~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c~~~~~~~~~ 182 (483)
+|+++|.||||+|+ ++|++||||+++||++. .|..| ..|.....|++.+|+|++...+
T Consensus 1 ~Y~~~v~iGtp~q~-~~~~iDTGS~~~wv~~~---~c~~~----~~~~~~~~y~~~~S~t~~~~~~-------------- 58 (317)
T PF00026_consen 1 QYYINVTIGTPPQT-FRVLIDTGSSDTWVPSS---NCNSC----SSCASSGFYNPSKSSTFSNQGK-------------- 58 (317)
T ss_dssp EEEEEEEETTTTEE-EEEEEETTBSSEEEEBT---TECSH----THHCTSC-BBGGGSTTEEEEEE--------------
T ss_pred CeEEEEEECCCCeE-EEEEEecccceeeecee---ccccc----ccccccccccccccccccccee--------------
Confidence 59999999999999 99999999999999988 88776 1123468999999999998752
Q ss_pred CCCCCCCCCCCCCCCCCCcceeeccceeEEEEEEEEEEEeCCcCcCceeeeccccC------CCCCceEeecCCCCC---
Q 011566 183 SRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILS------DRQPAGIAGFGRSSE--- 253 (483)
Q Consensus 183 ~~c~~c~~~~~~c~~~c~~~~~~Yg~g~~~G~~~~D~v~~~~~~~~~~~fg~~~~~------~~~~~GIlGLg~~~~--- 253 (483)
.+.+.|++|++.|.++.|+|+|++..+.++.||++... ....+||||||+...
T Consensus 59 ------------------~~~~~y~~g~~~G~~~~D~v~ig~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~ 120 (317)
T PF00026_consen 59 ------------------PFSISYGDGSVSGNLVSDTVSIGGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSS 120 (317)
T ss_dssp ------------------EEEEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGG
T ss_pred ------------------eeeeeccCcccccccccceEeeeeccccccceeccccccccccccccccccccccCCccccc
Confidence 89999999999999999999999999999999998863 234499999997543
Q ss_pred ----Ccccc------cccceeeeecccCcCCCCCCccceEEccCCCCCCCCCCCceeeeceeCCCCCCCCCCcceeEEee
Q 011566 254 ----SLPSQ------LGLKKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGLR 323 (483)
Q Consensus 254 ----S~~~Q------l~~~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~ 323 (483)
+++.| +..++||++|.+.. ...|.|+|||+|+++ +.++++|+|+.. ..+|.|.++
T Consensus 121 ~~~~~~~~~l~~~g~i~~~~fsl~l~~~~-----~~~g~l~~Gg~d~~~-~~g~~~~~~~~~---------~~~w~v~~~ 185 (317)
T PF00026_consen 121 STYPTFLDQLVQQGLISSNVFSLYLNPSD-----SQNGSLTFGGYDPSK-YDGDLVWVPLVS---------SGYWSVPLD 185 (317)
T ss_dssp GTS-SHHHHHHHTTSSSSSEEEEEEESTT-----SSEEEEEESSEEGGG-EESEEEEEEBSS---------TTTTEEEEE
T ss_pred ccCCcceecchhhccccccccceeeeecc-----cccchheeecccccc-ccCceeccCccc---------ccccccccc
Confidence 34444 34489999998852 467899999999999 999999999984 679999999
Q ss_pred EEEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCccCcccccCCCcc
Q 011566 324 QIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSV 403 (483)
Q Consensus 324 ~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 403 (483)
+|.+++...... ....++||||+++++||++++++|++++...... ..+.++|... .
T Consensus 186 ~i~i~~~~~~~~---------~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~---------~~~~~~c~~~-----~ 242 (317)
T PF00026_consen 186 SISIGGESVFSS---------SGQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD---------GVYSVPCNST-----D 242 (317)
T ss_dssp EEEETTEEEEEE---------EEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC---------SEEEEETTGG-----G
T ss_pred cccccccccccc---------cceeeecccccccccccchhhHHHHhhhcccccc---------eeEEEecccc-----c
Confidence 999999832221 1246999999999999999999999998765331 4456778765 6
Q ss_pred ccCeEEEEEcCCcEEEcCCCCceEEeCC--ceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeCCCCEEEEEeC
Q 011566 404 YLPELILKFKGGAKMALPPENYFALVGN--EVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAKQ 480 (483)
Q Consensus 404 ~~P~i~f~f~gg~~~~l~~~~y~~~~~~--~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~igfa~~ 480 (483)
.+|.|+|+| ++.+|+||+++|+..... ...|+..+...+. ......+|||.+|||++|++||.+++|||||+|
T Consensus 243 ~~p~l~f~~-~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~---~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 243 SLPDLTFTF-GGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDS---SDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp GSEEEEEEE-TTEEEEEEHHHHEEEESSTTSSEEEESEEEESS---TTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ccceEEEee-CCEEEEecchHhcccccccccceeEeeeecccc---cccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 789999999 799999999999988765 3489999976321 234567999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=3e-43 Score=344.20 Aligned_cols=264 Identities=33% Similarity=0.563 Sum_probs=215.5
Q ss_pred EEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCcceecCCCcCCCCCCCCCC
Q 011566 104 YSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIP--AFIPKRSSSSQLIGCQNPKCSWIFGPNV 181 (483)
Q Consensus 104 Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~--~f~p~~SsT~~~~~c~~~~c~~~~~~~~ 181 (483)
|+++|.||+|+|+ +.|+|||||+++||+|. .|..|.... .. .|++..|+++....
T Consensus 1 Y~~~i~iGtp~q~-~~l~~DTGS~~~wv~~~---~c~~~~~~~-----~~~~~~~~~~s~~~~~~~-------------- 57 (283)
T cd05471 1 YYGEITIGTPPQK-FSVIFDTGSSLLWVPSS---NCTSCSCQK-----HPRFKYDSSKSSTYKDTG-------------- 57 (283)
T ss_pred CEEEEEECCCCcE-EEEEEeCCCCCEEEecC---CCCcccccc-----CCCCccCccCCceeecCC--------------
Confidence 8899999999999 99999999999999999 888775421 22 26676666655432
Q ss_pred CCCCCCCCCCCCCCCCCCCcceeeccceeEEEEEEEEEEEeCCcCcCceeeeccccCC-----CCCceEeecCCCC----
Q 011566 182 ESRCKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSD-----RQPAGIAGFGRSS---- 252 (483)
Q Consensus 182 ~~~c~~c~~~~~~c~~~c~~~~~~Yg~g~~~G~~~~D~v~~~~~~~~~~~fg~~~~~~-----~~~~GIlGLg~~~---- 252 (483)
| .|.+.|++|++.|.+++|+|+|++..++++.|||++... ...+||||||+..
T Consensus 58 -------------~-----~~~~~Y~~g~~~g~~~~D~v~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~ 119 (283)
T cd05471 58 -------------C-----TFSITYGDGSVTGGLGTDTVTIGGLTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVD 119 (283)
T ss_pred -------------C-----EEEEEECCCeEEEEEEEeEEEECCEEEeceEEEEEeccCCcccccccceEeecCCcccccc
Confidence 2 999999999999999999999999999999999998653 3449999999988
Q ss_pred --CCccccccc------ceeeeecccCcCCCCCCccceEEccCCCCCCCCCCCceeeeceeCCCCCCCCCCcceeEEeeE
Q 011566 253 --ESLPSQLGL------KKFSYCLLSRKFDDAPVSSNLVLDTGPGSGDSKTPGLSYTPFYKNPVGSSSAFGEFYYVGLRQ 324 (483)
Q Consensus 253 --~S~~~Ql~~------~~Fs~~L~~~~~~~~~~~~g~l~~Gg~d~~~~~~g~l~~~p~~~~~~~~~~~~~~~w~v~l~~ 324 (483)
.+++.||.. ++||+||.+.. .....|.|+|||+|+++ +.+++.|+|+.... ..+|.|.+++
T Consensus 120 ~~~s~~~~l~~~~~i~~~~Fs~~l~~~~---~~~~~g~l~~Gg~d~~~-~~~~~~~~p~~~~~-------~~~~~v~l~~ 188 (283)
T cd05471 120 GVPSFFDQLKSQGLISSPVFSFYLGRDG---DGGNGGELTFGGIDPSK-YTGDLTYTPVVSNG-------PGYWQVPLDG 188 (283)
T ss_pred cCCCHHHHHHHCCCCCCCEEEEEEcCCC---CCCCCCEEEEcccCccc-cCCceEEEecCCCC-------CCEEEEEeCe
Confidence 677777653 89999998742 23467899999999988 89999999998752 5799999999
Q ss_pred EEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCccCcccccCCCccc
Q 011566 325 IIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFDISGKKSVY 404 (483)
Q Consensus 325 i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 404 (483)
|+|+++.... ......++|||||++++||++++++|++++...... ...|+...+.....
T Consensus 189 i~v~~~~~~~--------~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~ 248 (283)
T cd05471 189 ISVGGKSVIS--------SSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS------------SDGGYGVDCSPCDT 248 (283)
T ss_pred EEECCceeee--------cCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc------------cCCcEEEeCcccCc
Confidence 9999975111 123478999999999999999999999998776542 12233333333378
Q ss_pred cCeEEEEEcCCcEEEcCCCCceEEeCCceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeCCCCEEEEEe
Q 011566 405 LPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFAK 479 (483)
Q Consensus 405 ~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~igfa~ 479 (483)
+|+|+|+| .+|||++|||++|++||+++++||||+
T Consensus 249 ~p~i~f~f----------------------------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 249 LPDITFTF----------------------------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred CCCEEEEE----------------------------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 89999999 289999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.95 E-value=8.4e-29 Score=221.45 Aligned_cols=152 Identities=43% Similarity=0.779 Sum_probs=119.2
Q ss_pred EEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCcCCCCCCCCCCCC
Q 011566 104 YSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNVES 183 (483)
Q Consensus 104 Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c~~~~~~~~~~ 183 (483)
|+++|.||||+|+ +.|+|||||+++|++|. .+.|+|.+|+||+.++|.++.|...+..
T Consensus 1 Y~~~~~iGtP~~~-~~lvvDtgs~l~W~~C~-----------------~~~f~~~~Sst~~~v~C~s~~C~~~~~~---- 58 (164)
T PF14543_consen 1 YYVSVSIGTPPQP-FSLVVDTGSDLTWVQCP-----------------DPPFDPSKSSTYRPVPCSSPQCSSAPSF---- 58 (164)
T ss_dssp EEEEEECTCTTEE-EEEEEETT-SSEEEET---------------------STT-TTSSBEC-BTTSHHHHHCTSS----
T ss_pred CEEEEEeCCCCce-EEEEEECCCCceEEcCC-----------------CcccCCccCCcccccCCCCcchhhcccc----
Confidence 8999999999999 99999999999999874 5899999999999999999999876542
Q ss_pred CCCCCCCCCCCCCCCCCcceeecccee-EEEEEEEEEEEeCCc-----CcCceeeeccccCCC---CCceEeecCCCCCC
Q 011566 184 RCKGCSPRNKTCPLACPSYLLQYGLGF-TAGLLLSETLRFPSK-----TVPNFLAGCSILSDR---QPAGIAGFGRSSES 254 (483)
Q Consensus 184 ~c~~c~~~~~~c~~~c~~~~~~Yg~g~-~~G~~~~D~v~~~~~-----~~~~~~fg~~~~~~~---~~~GIlGLg~~~~S 254 (483)
+..|...+..| .|.+.|++|+ +.|.+++|+|+++.. .+.++.|||+..... ..+||||||++++|
T Consensus 59 -~~~~~~~~~~C-----~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~~~~~GilGLg~~~~S 132 (164)
T PF14543_consen 59 -CPCCCCSNNSC-----PYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLFYGADGILGLGRGPLS 132 (164)
T ss_dssp -BTCCTCESSEE-----EEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSSTTEEEEEE-SSSTTS
T ss_pred -cccCCCCcCcc-----cceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCCcCCCcccccCCCccc
Confidence 23334444456 9999999987 999999999999764 577999999886542 44999999999999
Q ss_pred ccccc---ccceeeeecccCcCCCCCCccceEEccC
Q 011566 255 LPSQL---GLKKFSYCLLSRKFDDAPVSSNLVLDTG 287 (483)
Q Consensus 255 ~~~Ql---~~~~Fs~~L~~~~~~~~~~~~g~l~~Gg 287 (483)
|+.|| ..++|||||.+. .....|.|+||+
T Consensus 133 l~sQl~~~~~~~FSyCL~~~----~~~~~g~l~fG~ 164 (164)
T PF14543_consen 133 LPSQLASSSGNKFSYCLPSS----SPSSSGFLSFGD 164 (164)
T ss_dssp HHHHHHHH--SEEEEEB-S-----SSSSEEEEEECS
T ss_pred HHHHHHHhcCCeEEEECCCC----CCCCCEEEEeCc
Confidence 99999 779999999982 244678999985
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.94 E-value=5.2e-26 Score=203.24 Aligned_cols=157 Identities=39% Similarity=0.760 Sum_probs=124.0
Q ss_pred ceeEEeeEEEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHHHHHHHHHhcccCccccccccCCccCccc
Q 011566 317 FYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAVAKEFIRQMGNYSRAADVEKKSGLRPCFD 396 (483)
Q Consensus 317 ~w~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 396 (483)
+|+|+|++|+||++++.+++..++. .++.+++||||||++++||+++|++|+++|.+.+..............+..||.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~ 79 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYN 79 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEE
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceee
Confidence 5899999999999999999998877 667799999999999999999999999999998875421111233466789999
Q ss_pred ccC----CCccccCeEEEEEcCCcEEEcCCCCceEEeCCceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeCCC
Q 011566 397 ISG----KKSVYLPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLAN 472 (483)
Q Consensus 397 ~~~----~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~ 472 (483)
.+. .....+|+|+|+|.+|++++|++++|++...++..|+++.... .......|||+.+|++++++||+++
T Consensus 80 ~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~-----~~~~~~~viG~~~~~~~~v~fDl~~ 154 (161)
T PF14541_consen 80 LSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSD-----ADDDGVSVIGNFQQQNYHVVFDLEN 154 (161)
T ss_dssp GGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEET-----STTSSSEEE-HHHCCTEEEEEETTT
T ss_pred ccccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccC-----CCCCCcEEECHHHhcCcEEEEECCC
Confidence 877 3567999999999889999999999999988889999999761 1234579999999999999999999
Q ss_pred CEEEEEe
Q 011566 473 DRFGFAK 479 (483)
Q Consensus 473 ~~igfa~ 479 (483)
+||||+|
T Consensus 155 ~~igF~~ 161 (161)
T PF14541_consen 155 GRIGFAP 161 (161)
T ss_dssp TEEEEEE
T ss_pred CEEEEeC
Confidence 9999996
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.86 E-value=8.5e-22 Score=164.28 Aligned_cols=102 Identities=30% Similarity=0.534 Sum_probs=87.8
Q ss_pred EEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCcceecCCCcCCCCCCCCCCCCC
Q 011566 106 ISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAF-IPKRSSSSQLIGCQNPKCSWIFGPNVESR 184 (483)
Q Consensus 106 ~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f-~p~~SsT~~~~~c~~~~c~~~~~~~~~~~ 184 (483)
++|.||||||+ +.|+|||||+++||+|. .|..|.. ...+.| +|.+|++++...|
T Consensus 1 ~~i~vGtP~q~-~~~~~DTGSs~~Wv~~~---~c~~~~~-----~~~~~~~~~~~sst~~~~~~---------------- 55 (109)
T cd05470 1 IEIGIGTPPQT-FNVLLDTGSSNLWVPSV---DCQSLAI-----YSHSSYDDPSASSTYSDNGC---------------- 55 (109)
T ss_pred CEEEeCCCCce-EEEEEeCCCCCEEEeCC---CCCCccc-----ccccccCCcCCCCCCCCCCc----------------
Confidence 47999999999 99999999999999999 8887654 224556 9999999887543
Q ss_pred CCCCCCCCCCCCCCCCcceeeccceeEEEEEEEEEEEeCCcCcCceeeeccccCC------CCCceEeec
Q 011566 185 CKGCSPRNKTCPLACPSYLLQYGLGFTAGLLLSETLRFPSKTVPNFLAGCSILSD------RQPAGIAGF 248 (483)
Q Consensus 185 c~~c~~~~~~c~~~c~~~~~~Yg~g~~~G~~~~D~v~~~~~~~~~~~fg~~~~~~------~~~~GIlGL 248 (483)
.|.+.|++|++.|.++.|+|+|++..++++.|||++... ...+|||||
T Consensus 56 ----------------~~~~~Y~~g~~~g~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 56 ----------------TFSITYGTGSLSGGLSTDTVSIGDIEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred ----------------EEEEEeCCCeEEEEEEEEEEEECCEEECCEEEEEEEecCCccccccccccccCC
Confidence 899999999989999999999999999999999998653 234999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.08 E-value=6.1e-06 Score=66.33 Aligned_cols=93 Identities=19% Similarity=0.175 Sum_probs=65.9
Q ss_pred ccEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCcCCCCCCCCCC
Q 011566 102 GGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPNV 181 (483)
Q Consensus 102 ~~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c~~~~~~~~ 181 (483)
+.|++++.|+. ++ ++++||||++.+|+... -...+. . + ....
T Consensus 1 ~~~~v~v~i~~--~~-~~~llDTGa~~s~i~~~---~~~~l~----------~--~-----~~~~--------------- 42 (96)
T cd05483 1 GHFVVPVTING--QP-VRFLLDTGASTTVISEE---LAERLG----------L--P-----LTLG--------------- 42 (96)
T ss_pred CcEEEEEEECC--EE-EEEEEECCCCcEEcCHH---HHHHcC----------C--C-----ccCC---------------
Confidence 36899999996 88 99999999999999765 111110 0 0 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCcceeecccee-EEEEEEEEEEEeCCcCcCceeeeccccCCCCCceEeecCC
Q 011566 182 ESRCKGCSPRNKTCPLACPSYLLQYGLGF-TAGLLLSETLRFPSKTVPNFLAGCSILSDRQPAGIAGFGR 250 (483)
Q Consensus 182 ~~~c~~c~~~~~~c~~~c~~~~~~Yg~g~-~~G~~~~D~v~~~~~~~~~~~fg~~~~~~~~~~GIlGLg~ 250 (483)
. ...+...+|. .......+.+++|+..++++.+..........+||||+.+
T Consensus 43 -------------~-----~~~~~~~~G~~~~~~~~~~~i~ig~~~~~~~~~~v~d~~~~~~~gIlG~d~ 94 (96)
T cd05483 43 -------------G-----KVTVQTANGRVRAARVRLDSLQIGGITLRNVPAVVLPGDALGVDGLLGMDF 94 (96)
T ss_pred -------------C-----cEEEEecCCCccceEEEcceEEECCcEEeccEEEEeCCcccCCceEeChHH
Confidence 0 5666777776 5556668999999999988888877654434699999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.68 E-value=0.0047 Score=52.06 Aligned_cols=98 Identities=12% Similarity=0.076 Sum_probs=63.9
Q ss_pred cccCcccEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCcCCCCC
Q 011566 97 SVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWI 176 (483)
Q Consensus 97 ~~~~~~~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c~~~ 176 (483)
....+|.|++++.|.. ++ +.++||||++.+-+... --.. .+ .++..- .+
T Consensus 5 ~~~~~g~~~v~~~InG--~~-~~flVDTGAs~t~is~~---~A~~----------Lg-l~~~~~-~~------------- 53 (121)
T TIGR02281 5 AKDGDGHFYATGRVNG--RN-VRFLVDTGATSVALNEE---DAQR----------LG-LDLNRL-GY------------- 53 (121)
T ss_pred EEcCCCeEEEEEEECC--EE-EEEEEECCCCcEEcCHH---HHHH----------cC-CCcccC-Cc-------------
Confidence 3345689999999988 68 99999999999988654 1000 00 111100 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcceeecccee-EEEEEEEEEEEeCCcCcCceeeeccccCCCCCceEeecCC
Q 011566 177 FGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGF-TAGLLLSETLRFPSKTVPNFLAGCSILSDRQPAGIAGFGR 250 (483)
Q Consensus 177 ~~~~~~~~c~~c~~~~~~c~~~c~~~~~~Yg~g~-~~G~~~~D~v~~~~~~~~~~~fg~~~~~~~~~~GIlGLg~ 250 (483)
...+.=+.|. ....+.-|.+++|+..+.|+.+.+...... .+|+||+.+
T Consensus 54 ------------------------~~~~~ta~G~~~~~~~~l~~l~iG~~~~~nv~~~v~~~~~~-~~~LLGm~f 103 (121)
T TIGR02281 54 ------------------------TVTVSTANGQIKAARVTLDRVAIGGIVVNDVDAMVAEGGAL-SESLLGMSF 103 (121)
T ss_pred ------------------------eEEEEeCCCcEEEEEEEeCEEEECCEEEeCcEEEEeCCCcC-CceEcCHHH
Confidence 2222223455 445568899999999999999887653322 389999986
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.91 E-value=0.024 Score=44.47 Aligned_cols=38 Identities=16% Similarity=-0.003 Sum_probs=27.5
Q ss_pred EEEEEEEEEEEeCCcCcCceeeeccccCCCCCceEeecC
Q 011566 211 TAGLLLSETLRFPSKTVPNFLAGCSILSDRQPAGIAGFG 249 (483)
Q Consensus 211 ~~G~~~~D~v~~~~~~~~~~~fg~~~~~~~~~~GIlGLg 249 (483)
.......+.+++++..+.++.|-... .....+||||+-
T Consensus 52 ~~~~~~~~~i~ig~~~~~~~~~~v~~-~~~~~~~iLG~d 89 (90)
T PF13650_consen 52 TVYRGRVDSITIGGITLKNVPFLVVD-LGDPIDGILGMD 89 (90)
T ss_pred EEEEEEEEEEEECCEEEEeEEEEEEC-CCCCCEEEeCCc
Confidence 44556667899999988888877665 233449999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.22 E-value=0.08 Score=44.76 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=22.8
Q ss_pred ceeeCccceeeeEEEEeCCCCEEEE
Q 011566 453 AIILGDFQLQNFYLEFDLANDRFGF 477 (483)
Q Consensus 453 ~~IlG~~fl~~~yvvfD~~~~~igf 477 (483)
..|||..||+.+-.+.|+.+++|-|
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEEC
Confidence 4799999999999999999999864
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.02 E-value=0.093 Score=44.38 Aligned_cols=91 Identities=10% Similarity=0.112 Sum_probs=60.2
Q ss_pred cccEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCcCCCCCCCCC
Q 011566 101 YGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPN 180 (483)
Q Consensus 101 ~~~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c~~~~~~~ 180 (483)
...+++++.|+. ++ +.+++|||++.+++... -+..+..+ +....
T Consensus 14 ~~~~~v~~~Ing--~~-~~~LvDTGAs~s~Is~~---~a~~lgl~-----------~~~~~------------------- 57 (124)
T cd05479 14 VPMLYINVEING--VP-VKAFVDSGAQMTIMSKA---CAEKCGLM-----------RLIDK------------------- 57 (124)
T ss_pred eeEEEEEEEECC--EE-EEEEEeCCCceEEeCHH---HHHHcCCc-----------cccCc-------------------
Confidence 467999999998 78 99999999999999755 22222210 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCcce-eeccce-e-EEEEEEEEEEEeCCcCcCceeeeccccCCCCCceEeecCC
Q 011566 181 VESRCKGCSPRNKTCPLACPSYL-LQYGLG-F-TAGLLLSETLRFPSKTVPNFLAGCSILSDRQPAGIAGFGR 250 (483)
Q Consensus 181 ~~~~c~~c~~~~~~c~~~c~~~~-~~Yg~g-~-~~G~~~~D~v~~~~~~~~~~~fg~~~~~~~~~~GIlGLg~ 250 (483)
.+. ...|.| . ..|....+.+.+++..++ +.|.+.... ..++|||+-+
T Consensus 58 --------------------~~~~~~~g~g~~~~~g~~~~~~l~i~~~~~~-~~~~Vl~~~--~~d~ILG~d~ 107 (124)
T cd05479 58 --------------------RFQGIAKGVGTQKILGRIHLAQVKIGNLFLP-CSFTVLEDD--DVDFLIGLDM 107 (124)
T ss_pred --------------------ceEEEEecCCCcEEEeEEEEEEEEECCEEee-eEEEEECCC--CcCEEecHHH
Confidence 222 233323 2 667777889999998765 677665432 4599999976
No 32
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=94.80 E-value=0.097 Score=44.99 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=25.1
Q ss_pred ceeeCccceeeeEEEEeCCCCEEEEEe
Q 011566 453 AIILGDFQLQNFYLEFDLANDRFGFAK 479 (483)
Q Consensus 453 ~~IlG~~fl~~~yvvfD~~~~~igfa~ 479 (483)
..|||.++|+.+...-|+.+++|-|-.
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 489999999999999999999999974
No 33
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=94.54 E-value=0.32 Score=48.16 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=18.9
Q ss_pred eeccceeEEEEEEEEEEEeCCcC
Q 011566 204 LQYGLGFTAGLLLSETLRFPSKT 226 (483)
Q Consensus 204 ~~Yg~g~~~G~~~~D~v~~~~~~ 226 (483)
..|++|.+=|.+.+-.|+|++..
T Consensus 82 ~~F~sgytWGsVr~AdV~igge~ 104 (370)
T PF11925_consen 82 AQFASGYTWGSVRTADVTIGGET 104 (370)
T ss_pred hhccCcccccceEEEEEEEcCee
Confidence 45777778899999999999873
No 34
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=89.88 E-value=1.2 Score=36.45 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.4
Q ss_pred ceeeCccceeeeEEEEeCCCCEE
Q 011566 453 AIILGDFQLQNFYLEFDLANDRF 475 (483)
Q Consensus 453 ~~IlG~~fl~~~yvvfD~~~~~i 475 (483)
..+||+.||+.+-++.|+.++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 57999999999999999988764
No 35
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=89.87 E-value=0.29 Score=38.73 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=25.1
Q ss_pred EEEEEEeCCCCCceeeEEEEcCCCceeeeCC
Q 011566 104 YSISLSFGTPPQASTPFIFDTGSSLVWFPCT 134 (483)
Q Consensus 104 Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~ 134 (483)
|++++.|+. ++ +.+++||||+..++..+
T Consensus 1 ~~~~~~Ing--~~-i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVNG--KP-LKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEECC--EE-EEEEEcCCcceEEeCHH
Confidence 578999998 88 99999999999999765
No 36
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=86.77 E-value=1.2 Score=40.58 Aligned_cols=103 Identities=13% Similarity=0.062 Sum_probs=67.1
Q ss_pred ccccccccCcccEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCc
Q 011566 92 IKTPLSVHSYGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNP 171 (483)
Q Consensus 92 ~~~~l~~~~~~~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~ 171 (483)
..+.|....+|.|.++..|-. |+ +..++|||-+.+-+... .-. .=-|+.+..
T Consensus 94 ~~v~Lak~~~GHF~a~~~VNG--k~-v~fLVDTGATsVal~~~---dA~-----------RlGid~~~l----------- 145 (215)
T COG3577 94 QEVSLAKSRDGHFEANGRVNG--KK-VDFLVDTGATSVALNEE---DAR-----------RLGIDLNSL----------- 145 (215)
T ss_pred eEEEEEecCCCcEEEEEEECC--EE-EEEEEecCcceeecCHH---HHH-----------HhCCCcccc-----------
Confidence 355666677899999999988 89 99999999998888655 110 112333210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeecccee-EEEEEEEEEEEeCCcCcCceeeeccccCCCCCceEeecCC
Q 011566 172 KCSWIFGPNVESRCKGCSPRNKTCPLACPSYLLQYGLGF-TAGLLLSETLRFPSKTVPNFLAGCSILSDRQPAGIAGFGR 250 (483)
Q Consensus 172 ~c~~~~~~~~~~~c~~c~~~~~~c~~~c~~~~~~Yg~g~-~~G~~~~D~v~~~~~~~~~~~fg~~~~~~~~~~GIlGLg~ 250 (483)
+. ++.+.=.+|. ....+..|.|.||+..++|+.--++.... ...-+|||.+
T Consensus 146 ----------------------~y-----~~~v~TANG~~~AA~V~Ld~v~IG~I~~~nV~A~V~~~g~-L~~sLLGMSf 197 (215)
T COG3577 146 ----------------------DY-----TITVSTANGRARAAPVTLDRVQIGGIRVKNVDAMVAEDGA-LDESLLGMSF 197 (215)
T ss_pred ----------------------CC-----ceEEEccCCccccceEEeeeEEEccEEEcCchhheecCCc-cchhhhhHHH
Confidence 01 4444556787 55678899999999988877654442211 1134555544
No 37
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=85.90 E-value=1.9 Score=36.13 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=27.2
Q ss_pred CcceeEEeeEEEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHH
Q 011566 315 GEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAV 368 (483)
Q Consensus 315 ~~~w~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 368 (483)
.++|.++ +.|+|+.+ .++||||++.+.+++++.+++
T Consensus 9 ~g~~~v~---~~InG~~~---------------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNV---------------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEE---------------EEEEECCCCcEEcCHHHHHHc
Confidence 4556554 56778754 479999999999999987654
No 38
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=83.36 E-value=1.6 Score=32.85 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=28.2
Q ss_pred cccEEEEEEeCCCCCceeeEEEEcCCCceeeeCC
Q 011566 101 YGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCT 134 (483)
Q Consensus 101 ~~~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~ 134 (483)
.+.+++.+.||. +. +.+++|||++...|...
T Consensus 6 ~g~~~v~~~I~g--~~-~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 6 PGLMYVPVSIGG--VQ-VKALVDTGATHNFISES 36 (72)
T ss_pred CCEEEEEEEECC--EE-EEEEEeCCCcceecCHH
Confidence 478999999999 88 99999999999988766
No 39
>PF13650 Asp_protease_2: Aspartyl protease
Probab=81.64 E-value=2.1 Score=33.14 Aligned_cols=21 Identities=14% Similarity=0.468 Sum_probs=18.4
Q ss_pred CeEEcccccceecCHHHHHHH
Q 011566 348 GVIVDSGSTFTFMEGPLFEAV 368 (483)
Q Consensus 348 ~~iiDSGTt~~~lp~~~~~~l 368 (483)
.++||||++.+.+.++.++++
T Consensus 11 ~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 11 RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEcCCCCcEEECHHHHHHc
Confidence 489999999999999987765
No 40
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=81.08 E-value=3.1 Score=32.76 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=24.3
Q ss_pred EEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHH
Q 011566 325 IIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAV 368 (483)
Q Consensus 325 i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 368 (483)
+.|+|+.+. +.||||++.+.++++.+..+
T Consensus 5 ~~Ing~~i~---------------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 5 LLVNGKPLK---------------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEECCEEEE---------------EEEcCCcceEEeCHHHHHHh
Confidence 678888764 79999999999999987754
No 41
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=77.15 E-value=2.6 Score=33.66 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=23.1
Q ss_pred EEEEEEeCCCCCceeeEEEEcCCCceeeeCC
Q 011566 104 YSISLSFGTPPQASTPFIFDTGSSLVWFPCT 134 (483)
Q Consensus 104 Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~ 134 (483)
=+.+|.|.. ++ +.+++||||+.+-++..
T Consensus 6 p~i~v~i~g--~~-i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 6 PYITVKING--KK-IKALLDTGADVSIISEK 33 (100)
T ss_dssp SEEEEEETT--EE-EEEEEETTBSSEEESSG
T ss_pred ceEEEeECC--EE-EEEEEecCCCcceeccc
Confidence 356788887 68 99999999999888755
No 42
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=74.06 E-value=6.2 Score=30.78 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=17.8
Q ss_pred CeEEcccccceecCHHHHHHH
Q 011566 348 GVIVDSGSTFTFMEGPLFEAV 368 (483)
Q Consensus 348 ~~iiDSGTt~~~lp~~~~~~l 368 (483)
.++||||++.+.++.+..+.+
T Consensus 15 ~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 15 RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCCCcEEcCHHHHHHc
Confidence 379999999999999876654
No 43
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=73.80 E-value=5.7 Score=29.79 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=18.0
Q ss_pred eEEcccccceecCHHHHHHH
Q 011566 349 VIVDSGSTFTFMEGPLFEAV 368 (483)
Q Consensus 349 ~iiDSGTt~~~lp~~~~~~l 368 (483)
++||||++...++.+.++.+
T Consensus 22 alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 22 ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEeCCCcceecCHHHHHHh
Confidence 89999999999999987765
No 44
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=73.64 E-value=3.1 Score=38.00 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=31.3
Q ss_pred ccCeEEEEEcCCcEEEcCCCCceEEeCCceEEEEEEecCCCCCCCCCCCceeeCccceeeeEEEEeCCCCEEEEE
Q 011566 404 YLPELILKFKGGAKMALPPENYFALVGNEVLCLILFTDNAAGPALGRGPAIILGDFQLQNFYLEFDLANDRFGFA 478 (483)
Q Consensus 404 ~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~C~~~i~~~~~~~~~~~~~~~IlG~~fl~~~yvvfD~~~~~igfa 478 (483)
..+.+.+.+ ++..|.+| ++.+.+ .+...|||++|+|.++=-..++ .+|-|-
T Consensus 66 ~~~~~~i~I-~~~~F~IP---~iYq~~-------------------~g~d~IlG~NF~r~y~Pfiq~~-~~I~f~ 116 (201)
T PF02160_consen 66 KAKNGKIQI-ADKIFRIP---TIYQQE-------------------SGIDIILGNNFLRLYEPFIQTE-DRIQFH 116 (201)
T ss_pred EecCceEEE-ccEEEecc---EEEEec-------------------CCCCEEecchHHHhcCCcEEEc-cEEEEE
Confidence 346677777 66777766 222221 1235899999999877555554 355554
No 45
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=70.90 E-value=12 Score=33.02 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=18.5
Q ss_pred CCeEEcccccceecCHHHHHHH
Q 011566 347 GGVIVDSGSTFTFMEGPLFEAV 368 (483)
Q Consensus 347 ~~~iiDSGTt~~~lp~~~~~~l 368 (483)
-.+++|||++...+..++.+.|
T Consensus 46 i~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 46 IKVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEEeCCCccceeehhhHHhh
Confidence 4589999999999999877765
No 46
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=68.76 E-value=23 Score=27.92 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=17.1
Q ss_pred CCCeEEcccccceecCHHHH
Q 011566 346 NGGVIVDSGSTFTFMEGPLF 365 (483)
Q Consensus 346 ~~~~iiDSGTt~~~lp~~~~ 365 (483)
+...+||||+..+.+|....
T Consensus 9 ~~~fLVDTGA~vSviP~~~~ 28 (89)
T cd06094 9 GLRFLVDTGAAVSVLPASST 28 (89)
T ss_pred CcEEEEeCCCceEeeccccc
Confidence 46789999999999998743
No 47
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=68.51 E-value=7.2 Score=30.34 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=17.9
Q ss_pred eEEcccccceecCHHHHHHH
Q 011566 349 VIVDSGSTFTFMEGPLFEAV 368 (483)
Q Consensus 349 ~iiDSGTt~~~lp~~~~~~l 368 (483)
+++|||.+.+.++++..+.+
T Consensus 12 fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 12 FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEECCCCeEEECHHHhhhc
Confidence 79999999999999987764
No 48
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=65.19 E-value=9 Score=32.26 Aligned_cols=90 Identities=14% Similarity=0.132 Sum_probs=51.0
Q ss_pred cccEEEEEEeCCCCCceeeEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceecCCCcCCCCCCCCC
Q 011566 101 YGGYSISLSFGTPPQASTPFIFDTGSSLVWFPCTSRYRCVDCNFPNVDPSRIPAFIPKRSSSSQLIGCQNPKCSWIFGPN 180 (483)
Q Consensus 101 ~~~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~~~~~C~~C~~~~~~~~~~~~f~p~~SsT~~~~~c~~~~c~~~~~~~ 180 (483)
....|++++|+. ++ +..++|||...+-+... -+..|... ...|.
T Consensus 22 v~mLyI~~~ing--~~-vkA~VDtGAQ~tims~~---~a~r~gL~-------~lid~----------------------- 65 (124)
T PF09668_consen 22 VSMLYINCKING--VP-VKAFVDTGAQSTIMSKS---CAERCGLM-------RLIDK----------------------- 65 (124)
T ss_dssp ----EEEEEETT--EE-EEEEEETT-SS-EEEHH---HHHHTTGG-------GGEEG-----------------------
T ss_pred cceEEEEEEECC--EE-EEEEEeCCCCccccCHH---HHHHcCCh-------hhccc-----------------------
Confidence 368999999999 88 99999999999888755 22445431 00100
Q ss_pred CCCCCCCCCCCCCCCCCCCCcc-eeecccee--EEEEEEEEEEEeCCcCcCceeeeccccCCCCCceEeecC
Q 011566 181 VESRCKGCSPRNKTCPLACPSY-LLQYGLGF--TAGLLLSETLRFPSKTVPNFLAGCSILSDRQPAGIAGFG 249 (483)
Q Consensus 181 ~~~~c~~c~~~~~~c~~~c~~~-~~~Yg~g~--~~G~~~~D~v~~~~~~~~~~~fg~~~~~~~~~~GIlGLg 249 (483)
.+ .+.+|-|. +-|.+..=.+.+++..++ ..|-+.. ....+=+|||-
T Consensus 66 --------------------r~~g~a~GvG~~~i~G~Ih~~~l~ig~~~~~-~s~~Vle--~~~~d~llGld 114 (124)
T PF09668_consen 66 --------------------RFAGVAKGVGTQKILGRIHSVQLKIGGLFFP-CSFTVLE--DQDVDLLLGLD 114 (124)
T ss_dssp --------------------GG-EE-------EEEEEEEEEEEEETTEEEE-EEEEEET--TSSSSEEEEHH
T ss_pred --------------------cccccccCCCcCceeEEEEEEEEEECCEEEE-EEEEEeC--CCCcceeeeHH
Confidence 12 23445554 889999899999986554 4444433 22336777763
No 49
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=63.51 E-value=7.1 Score=30.65 Aligned_cols=25 Identities=16% Similarity=0.192 Sum_probs=20.8
Q ss_pred EEEeCCCCCceeeEEEEcCCCceeeeCC
Q 011566 107 SLSFGTPPQASTPFIFDTGSSLVWFPCT 134 (483)
Q Consensus 107 ~i~iGtP~q~~~~v~iDTGSs~~Wv~~~ 134 (483)
.+.|+. |. +.+++|||.+++-+...
T Consensus 2 ~~~i~g--~~-~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYING--KL-FEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEECC--EE-EEEEEccCCCCeEEccc
Confidence 456665 88 99999999999999754
No 50
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=60.68 E-value=8.1 Score=30.05 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=20.7
Q ss_pred EEEeCCCCCceeeEEEEcCCCceeeeCC
Q 011566 107 SLSFGTPPQASTPFIFDTGSSLVWFPCT 134 (483)
Q Consensus 107 ~i~iGtP~q~~~~v~iDTGSs~~Wv~~~ 134 (483)
.+.|.. ++ +.+++|||++.+-+...
T Consensus 2 ~v~InG--~~-~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVEG--VP-IVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEECC--EE-EEEEEECCCCeEEECHH
Confidence 456666 78 99999999999999765
No 51
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=60.05 E-value=7.5 Score=31.07 Aligned_cols=22 Identities=27% Similarity=0.233 Sum_probs=9.2
Q ss_pred CCCchhhHHHHHHHHHHHHhhhc
Q 011566 1 MAACPFSLICLFSLLILLFTTDA 23 (483)
Q Consensus 1 m~~~~~~~~~l~~l~~~~~~a~a 23 (483)
|+ |-.++|+.++|+++|++++.
T Consensus 1 Ma-SK~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISSE 22 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHhh
Confidence 77 44333333333333333333
No 52
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=56.90 E-value=9.4 Score=30.37 Aligned_cols=17 Identities=12% Similarity=0.343 Sum_probs=15.0
Q ss_pred CeEEcccccceecCHHH
Q 011566 348 GVIVDSGSTFTFMEGPL 364 (483)
Q Consensus 348 ~~iiDSGTt~~~lp~~~ 364 (483)
.++||||+..+.+++..
T Consensus 18 ~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 18 KALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEETTBSSEEESSGG
T ss_pred EEEEecCCCcceecccc
Confidence 38999999999999874
No 53
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=47.99 E-value=84 Score=28.87 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=27.4
Q ss_pred CcceeEEeeEEEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHH
Q 011566 315 GEFYYVGLRQIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEA 367 (483)
Q Consensus 315 ~~~w~v~l~~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~ 367 (483)
.++|.++ ..|||+.+. .++|||.|...|+++..+.
T Consensus 103 ~GHF~a~---~~VNGk~v~---------------fLVDTGATsVal~~~dA~R 137 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD---------------FLVDTGATSVALNEEDARR 137 (215)
T ss_pred CCcEEEE---EEECCEEEE---------------EEEecCcceeecCHHHHHH
Confidence 4566544 778898875 6999999999999986554
No 54
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=47.94 E-value=22 Score=28.15 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=18.9
Q ss_pred CCeEEcccccceecCHHHHHHH
Q 011566 347 GGVIVDSGSTFTFMEGPLFEAV 368 (483)
Q Consensus 347 ~~~iiDSGTt~~~lp~~~~~~l 368 (483)
-.+.||||++...+|...++.+
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l 32 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSL 32 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhh
Confidence 3589999999999999987765
No 55
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=46.18 E-value=15 Score=30.76 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=18.0
Q ss_pred eEEccccc-ceecCHHHHHHH
Q 011566 349 VIVDSGST-FTFMEGPLFEAV 368 (483)
Q Consensus 349 ~iiDSGTt-~~~lp~~~~~~l 368 (483)
.+||||.+ ++.+|+.+++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999999 999999998875
No 56
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=38.04 E-value=39 Score=28.43 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=23.0
Q ss_pred EEEECcEEeeeCCccccCCCCCCCCeEEcccccceecCHHHHHHH
Q 011566 324 QIIVGSKHVKIPYSYLVPGSDGNGGVIVDSGSTFTFMEGPLFEAV 368 (483)
Q Consensus 324 ~i~vg~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 368 (483)
.++++|+.+. ++||||+..+.++...++.+
T Consensus 28 ~~~ing~~vk---------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK---------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE---------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE---------------EEEeCCCCccccCHHHHHHc
Confidence 3678888764 89999999999999987763
No 57
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=35.69 E-value=42 Score=29.64 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=21.4
Q ss_pred cEEEEEEeCCCCCceeeEEEEcCCCceeeeCC
Q 011566 103 GYSISLSFGTPPQASTPFIFDTGSSLVWFPCT 134 (483)
Q Consensus 103 ~Y~~~i~iGtP~q~~~~v~iDTGSs~~Wv~~~ 134 (483)
.+.+.+.+ ...+ ++++|||||....+...
T Consensus 34 T~~v~l~~--~~t~-i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNC--KGTP-IKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEee--cCcE-EEEEEeCCCccceeehh
Confidence 35555554 4477 99999999999888655
No 58
>PF15240 Pro-rich: Proline-rich
Probab=27.04 E-value=39 Score=30.24 Aligned_cols=6 Identities=50% Similarity=0.833 Sum_probs=2.4
Q ss_pred HHHHHH
Q 011566 8 LICLFS 13 (483)
Q Consensus 8 ~~~l~~ 13 (483)
||+||+
T Consensus 2 LlVLLS 7 (179)
T PF15240_consen 2 LLVLLS 7 (179)
T ss_pred hhHHHH
Confidence 444333
No 59
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=23.96 E-value=82 Score=25.59 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=19.5
Q ss_pred EEEEeCCCCC----ceeeEEEEcCCCcee-ee
Q 011566 106 ISLSFGTPPQ----ASTPFIFDTGSSLVW-FP 132 (483)
Q Consensus 106 ~~i~iGtP~q----~~~~v~iDTGSs~~W-v~ 132 (483)
++|.|..|.| + +.+++|||.+..- ++
T Consensus 2 ~~v~~~~p~~~~~~~-v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 2 LDVELSNPKNPEFME-VRALVDTGFSGFLLVP 32 (107)
T ss_pred EEEEEeCCCCCCceE-EEEEEECCCCeEEecC
Confidence 5788888733 5 7899999999654 44
No 60
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=22.66 E-value=68 Score=31.57 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=14.6
Q ss_pred CCeEEcccccceecCHH
Q 011566 347 GGVIVDSGSTFTFMEGP 363 (483)
Q Consensus 347 ~~~iiDSGTt~~~lp~~ 363 (483)
..++||||++.+++|..
T Consensus 24 ~~v~~DTGSs~lWv~~~ 40 (317)
T cd06098 24 FTVIFDTGSSNLWVPSS 40 (317)
T ss_pred EEEEECCCccceEEecC
Confidence 34899999999999964
No 61
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=21.32 E-value=88 Score=30.01 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=14.4
Q ss_pred CeEEcccccceecCHH
Q 011566 348 GVIVDSGSTFTFMEGP 363 (483)
Q Consensus 348 ~~iiDSGTt~~~lp~~ 363 (483)
.++||||++.+++|..
T Consensus 15 ~v~~DTGS~~~wv~~~ 30 (278)
T cd06097 15 NLDLDTGSSDLWVFSS 30 (278)
T ss_pred EEEEeCCCCceeEeeC
Confidence 4899999999999965
Done!