BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011567
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A2B|A Chain A, Crystal Structure Of Serine Palmitoyltransferase From
Sphingobacterium Multivorum With Substrate L-Serine
Length = 398
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 112/406 (27%), Positives = 198/406 (48%), Gaps = 47/406 (11%)
Query: 85 IIEEMRCEP------PVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEK 138
I+EE++ + P+ +S I G+ V+ F S +YLGL +++++ ALEK
Sbjct: 14 IVEELKAKGLYAYFRPI-QSKQDTEVKIDGRRVLMFGSNSYLGLTTDTRIIKAAQDALEK 72
Query: 139 YGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVA 198
YG G G R GT+D+H++ E +++ ++G +IL+S G + + C + D I+
Sbjct: 73 YGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGRNDYILL 132
Query: 199 DEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS 258
DE H I +G LS S V+ + HN+M+ LR L R+ D+ + I + ++
Sbjct: 133 DERDHASIIDGSRLSFSKVIKYGHNNMEDLRAKLSRLPEDSA------KLICTDGIFSME 186
Query: 259 GQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL 318
G I L EL + ++ V +D+++S GV+G G G H G+ D +D++ +L
Sbjct: 187 GDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLN-DDVDLIMGTFSKSL 245
Query: 319 ATEGGFCTGSARVVDHQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTA 378
A+ GGF G A V+D + ++ +F + A+++++ P+ I KL KNT
Sbjct: 246 ASLGGFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTD 305
Query: 379 ILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWA---LKEDGVFV- 434
+ L D HG + + ESPI+ + + + + W L++DGVFV
Sbjct: 306 YAKAQLLD-HGFDLGAT-ESPILPIFIRSNEKTF------------WVTKMLQDDGVFVN 351
Query: 435 ------VTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 474
V ++ S+ IR + A H+ + +A E + ++
Sbjct: 352 PVVSPAVPAEESL---------IRFSLMATHTYDQIDEAIEKMVKV 388
>pdb|3TQX|A Chain A, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase
(Kbl) From Coxiella Burnetii
pdb|3TQX|B Chain B, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase
(Kbl) From Coxiella Burnetii
Length = 399
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 189/385 (49%), Gaps = 26/385 (6%)
Query: 95 VLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTID 154
++ S + KEV+NF + NYLGL H L+++ + +E+YG G R GT
Sbjct: 29 IITSPQNAEIKVGEKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGXASVRFICGTQT 88
Query: 155 VHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSR 214
+H + E I++FLGT D+ILYS D I++DE H I +G+ L +
Sbjct: 89 IHKELEKDISEFLGTDDTILYSSCFDANGGLFETLLGPEDAIISDELNHASIIDGIRLCK 148
Query: 215 STVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKY 274
+ +K+N L L+ AD K A+ + I + V+ G IA L + L +KY
Sbjct: 149 AQRYRYKNNAXGDLEAKLKE--ADEKGAR--FKLIATDGVFSXDGIIADLKSICDLADKY 204
Query: 275 RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGSARVVD 333
V +D+S++ G +G +GRG E+CGV D++DI+T +G AL GG+ +G +++
Sbjct: 205 NALVXVDDSHAVGFIGENGRGTPEYCGV-ADRVDILTGTLGKALGGASGGYTSGHKEIIE 263
Query: 334 HQRLSSSGYVFXXXXXXXXXXXXITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSI 392
R S Y+F + +++L+ E P L +L++N+ R G + +
Sbjct: 264 WLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGXEKLGFQLV 323
Query: 393 ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVG-- 450
N PI+ + L D QL + AD L+E G++VV + +P G
Sbjct: 324 PGN--HPIIPVXL--------GDAQLATNXADHLLQE-GIYVVGFSYPV-----VPXGKA 367
Query: 451 -IRLFVSAAHSEADLVKACESLKRI 474
IR+ SA H++ L +A E+ ++
Sbjct: 368 RIRVQXSAVHTQQQLDRAIEAFGQV 392
>pdb|2X8U|A Chain A, Sphingomonas Wittichii Serine Palmitoyltransferase
pdb|2X8U|B Chain B, Sphingomonas Wittichii Serine Palmitoyltransferase
Length = 412
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 159/335 (47%), Gaps = 18/335 (5%)
Query: 105 IISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIA 164
+I+G++ + + NY+G+ ++ + AL+++G G+ G R GT H CE +
Sbjct: 40 MINGRKTILLGTYNYMGMTFDPDVIAAGKQALDEFGSGTTGSRVLNGTYQGHKACEDALK 99
Query: 165 KFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHND 224
+F GT +I++S G I KGD I+ D H I +G +L + +V F+HN
Sbjct: 100 EFYGTEHAIVFSTGYQANLGMISTLAGKGDYIILDADSHASIYDGCWLGDAEIVRFRHNS 159
Query: 225 MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESN 284
++ L L R+ A+ A KL +V+E VY G IAPL E++ + +K+ + +DE++
Sbjct: 160 VEDLDKRLGRLPAE---AGKL---VVLEGVYSMMGDIAPLQEMVAVSKKHGAMILVDEAH 213
Query: 285 SFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVF 344
G G GRG+ E GV D +D V ++ T GGFC + + RL YVF
Sbjct: 214 GMGFFGEHGRGVFEEAGVEAD-VDFVVGTFSXSVGTVGGFCVSNHPKFEVLRLVCRPYVF 272
Query: 345 XXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLI 404
T+I L D L KN+ L GL D+ +S I+ +I
Sbjct: 273 TASLPPSVVATAATSIRKLMHAGDKRAHLWKNSRRLHQGLRDMGYKLGTETAQSAIIAVI 332
Query: 405 LEKSTGSMKNDLQLLEDIADW-ALKEDGVFVVTSK 438
L + + +A W L E G++V T++
Sbjct: 333 LT----------DMAQAVALWQGLLEAGLYVNTAR 357
>pdb|2W8T|A Chain A, Spt With Plp, N100c
Length = 427
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 149/314 (47%), Gaps = 10/314 (3%)
Query: 95 VLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
V+E P +I GK+ + + NY+G+ ++ + ALEK+G G+CG R GT
Sbjct: 49 VMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTF 108
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
H++ E + F GT +I++S G I KG+ ++ D H I +G
Sbjct: 109 HDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG 168
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
+ +V F+HN ++ L L R+ K+ + +V+E VY G IAPL E++ + +K
Sbjct: 169 NAEIVRFRHNSVEDLDKRLGRLP------KEPAKLVVLEGVYSMLGDIAPLKEMVAVAKK 222
Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
+ V +DE++S G G +GRG+ E G+ +ID V ++ T GGF + +
Sbjct: 223 HGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSXSVGTVGGFVVSNHPKFE 281
Query: 334 HQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA 393
RL+ Y+F T+I L + +L N L GL + G +
Sbjct: 282 AVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLG 340
Query: 394 SNP-ESPIVFLILE 406
+ +S IV ++LE
Sbjct: 341 TETCDSAIVAVMLE 354
>pdb|2W8V|A Chain A, Spt With Plp, N100w
Length = 427
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 148/314 (47%), Gaps = 10/314 (3%)
Query: 95 VLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
V+E P +I GK+ + + NY+G+ ++ + ALEK+G G+ G R GT
Sbjct: 49 VMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTWGSRMLNGTF 108
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
H++ E + F GT +I++S G I KG+ ++ D H I +G
Sbjct: 109 HDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG 168
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
+ +V F+HN ++ L L R+ K+ + +V+E VY G IAPL E++ + +K
Sbjct: 169 NAEIVRFRHNSVEDLDKRLGRLP------KEPAKLVVLEGVYSMLGDIAPLKEMVAVAKK 222
Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
+ V +DE++S G G +GRG+ E G+ +ID V ++ T GGF + +
Sbjct: 223 HGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSXSVGTVGGFVVSNHPKFE 281
Query: 334 HQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA 393
RL+ Y+F T+I L + +L N L GL + G +
Sbjct: 282 AVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLG 340
Query: 394 SNP-ESPIVFLILE 406
+ +S IV ++LE
Sbjct: 341 TETCDSAIVAVMLE 354
>pdb|2W8W|A Chain A, N100y Spt With Plp-Ser
Length = 427
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 148/314 (47%), Gaps = 10/314 (3%)
Query: 95 VLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
V+E P +I GK+ + + NY+G+ ++ + ALEK+G G+ G R GT
Sbjct: 49 VMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTYGSRMLNGTF 108
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
H++ E + F GT +I++S G I KG+ ++ D H I +G
Sbjct: 109 HDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG 168
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
+ +V F+HN ++ L L R+ K+ + +V+E VY G IAPL E++ + +K
Sbjct: 169 NAEIVRFRHNSVEDLDKRLGRLP------KEPAKLVVLEGVYSMLGDIAPLKEMVAVAKK 222
Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
+ V +DE++S G G +GRG+ E G+ +ID V ++ T GGF + +
Sbjct: 223 HGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVGGFVVSNHPKFE 281
Query: 334 HQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA 393
RL+ Y+F T+I L + +L N L GL + G +
Sbjct: 282 AVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLG 340
Query: 394 SNP-ESPIVFLILE 406
+ +S IV ++LE
Sbjct: 341 TETCDSAIVAVMLE 354
>pdb|2JGT|A Chain A, Low Resolution Structure Of Spt
pdb|2JGT|B Chain B, Low Resolution Structure Of Spt
Length = 422
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 148/314 (47%), Gaps = 10/314 (3%)
Query: 95 VLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
V+E P +I GK+ + + NY+G+ ++ + ALEK+G G+ G R GT
Sbjct: 50 VMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTNGSRMLNGTF 109
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
H++ E + F GT +I++S G I KG+ ++ D H I +G
Sbjct: 110 HDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG 169
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
+ +V F+HN ++ L L R+ K+ + +V+E VY G IAPL E++ + +K
Sbjct: 170 NAEIVRFRHNSVEDLDKRLGRLP------KEPAKLVVLEGVYSMLGDIAPLKEMVAVAKK 223
Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
+ V +DE++S G G +GRG+ E G+ +ID V ++ T GGF + +
Sbjct: 224 HGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVGGFVVSNHPKFE 282
Query: 334 HQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA 393
RL+ Y+F T+I L + +L N L GL + G +
Sbjct: 283 AVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLG 341
Query: 394 SNP-ESPIVFLILE 406
+ +S IV ++LE
Sbjct: 342 TETCDSAIVAVMLE 355
>pdb|2W8J|A Chain A, Spt With Plp-Ser
pdb|2XBN|A Chain A, Inhibition Of The Plp-Dependent Enzyme Serine
Palmitoyltransferase By Cycloserine: Evidence For A
Novel Decarboxylative Mechanism Of Inactivation
Length = 427
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 148/314 (47%), Gaps = 10/314 (3%)
Query: 95 VLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
V+E P +I GK+ + + NY+G+ ++ + ALEK+G G+ G R GT
Sbjct: 49 VMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTNGSRMLNGTF 108
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
H++ E + F GT +I++S G I KG+ ++ D H I +G
Sbjct: 109 HDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG 168
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
+ +V F+HN ++ L L R+ K+ + +V+E VY G IAPL E++ + +K
Sbjct: 169 NAEIVRFRHNSVEDLDKRLGRLP------KEPAKLVVLEGVYSMLGDIAPLKEMVAVAKK 222
Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
+ V +DE++S G G +GRG+ E G+ +ID V ++ T GGF + +
Sbjct: 223 HGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVGGFVVSNHPKFE 281
Query: 334 HQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA 393
RL+ Y+F T+I L + +L N L GL + G +
Sbjct: 282 AVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLG 340
Query: 394 SNP-ESPIVFLILE 406
+ +S IV ++LE
Sbjct: 341 TETCDSAIVAVMLE 354
>pdb|2W8U|A Chain A, Spt With Plp, N100y
Length = 427
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 148/314 (47%), Gaps = 10/314 (3%)
Query: 95 VLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
V+E P +I GK+ + + NY+G+ ++ + ALEK+G G+ G R GT
Sbjct: 49 VMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTYGSRMLNGTF 108
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
H++ E + F GT +I++S G I KG+ ++ D H I +G
Sbjct: 109 HDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG 168
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
+ +V F+HN ++ L L R+ K+ + +V+E VY G IAPL E++ + +K
Sbjct: 169 NAEIVRFRHNSVEDLDKRLGRLP------KEPAKLVVLEGVYSMLGDIAPLKEMVAVAKK 222
Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
+ V +DE++S G G +GRG+ E G+ +ID V ++ T GGF + +
Sbjct: 223 HGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSXSVGTVGGFVVSNHPKFE 281
Query: 334 HQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA 393
RL+ Y+F T+I L + +L N L GL + G +
Sbjct: 282 AVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLG 340
Query: 394 SNP-ESPIVFLILE 406
+ +S IV ++LE
Sbjct: 341 TETCDSAIVAVMLE 354
>pdb|2JG2|A Chain A, High Resolution Structure Of Spt With Plp Internal
Aldimine
Length = 422
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 148/314 (47%), Gaps = 10/314 (3%)
Query: 95 VLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
V+E P +I GK+ + + NY+G+ ++ + ALEK+G G+ G R GT
Sbjct: 50 VMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTNGSRMLNGTF 109
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
H++ E + F GT +I++S G I KG+ ++ D H I +G
Sbjct: 110 HDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG 169
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
+ +V F+HN ++ L L R+ K+ + +V+E VY G IAPL E++ + +K
Sbjct: 170 NAEIVRFRHNSVEDLDKRLGRLP------KEPAKLVVLEGVYSMLGDIAPLKEMVAVAKK 223
Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
+ V +DE++S G G +GRG+ E G+ +ID V ++ T GGF + +
Sbjct: 224 HGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSXSVGTVGGFVVSNHPKFE 282
Query: 334 HQRLSSSGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA 393
RL+ Y+F T+I L + +L N L GL + G +
Sbjct: 283 AVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLG 341
Query: 394 SNP-ESPIVFLILE 406
+ +S IV ++LE
Sbjct: 342 TETCDSAIVAVMLE 355
>pdb|1FC4|A Chain A, 2-Amino-3-Ketobutyrate Coa Ligase
pdb|1FC4|B Chain B, 2-Amino-3-Ketobutyrate Coa Ligase
Length = 401
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/372 (27%), Positives = 167/372 (44%), Gaps = 19/372 (5%)
Query: 104 TIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARI 163
T+ G V+NF + NYLGL H L+ + + + +G G R GT D H + E ++
Sbjct: 40 TVADGSHVINFCANNYLGLANHPDLIAAAKAGXDSHGFGXASVRFICGTQDSHKELEQKL 99
Query: 164 AKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN 223
A FLG D+ILYS D I++D H I +G+ L ++ + +N
Sbjct: 100 AAFLGXEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANN 159
Query: 224 DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDES 283
D L L+ + + A I + V+ G IA L + L +KY V +D+S
Sbjct: 160 DXQELEARLK----EAREAGARHVLIATDGVFSXDGVIANLKGVCDLADKYDALVXVDDS 215
Query: 284 NSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGSARVVDHQRLSSSGY 342
++ G +G +GRG E+C V ++DI+T +G AL GG+ VV+ R S Y
Sbjct: 216 HAVGFVGENGRGSHEYCDV-XGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPY 274
Query: 343 VFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVF 402
+F I ++ +E +L +L N R S G ++A + I+
Sbjct: 275 LFSNSLAPAIVAASIKVLEXVEAGSELRDRLWANARQFREQXS-AAGFTLA-GADHAIIP 332
Query: 403 LILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEA 462
+ L + + K + L+++G++V ++ K + IR SAAH+
Sbjct: 333 VXLGDAVVAQKFARE---------LQKEGIYVTGFFYPVVPKGQAR--IRTQXSAAHTPE 381
Query: 463 DLVKACESLKRI 474
+ +A E+ RI
Sbjct: 382 QITRAVEAFTRI 393
>pdb|4IW7|A Chain A, Crystal Structure Of 8-amino-7-oxononanoate Synthase
(biof) From Francisella Tularensis
Length = 399
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 136/317 (42%), Gaps = 15/317 (4%)
Query: 105 IISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIA 164
I +++F +++YL L L + + +KYG GS G G D E A
Sbjct: 47 FIKDDSIIDFTTSDYLNLSSAHNLKHAIVNGFDKYGFGSKGSNIVCGYTDETQQFEHEFA 106
Query: 165 KFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHND 224
KF+ P +I +S G + K D I AD+ +H I +G+ LS++ + +KH
Sbjct: 107 KFINYPRAIFFSSGFMANLAIYSTLFSKHDSIFADKYIHASIIDGIKLSQAKLRRYKHQQ 166
Query: 225 MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESN 284
+ L++ + + +I E V+ SG I LD+L ++ + ++ +DE++
Sbjct: 167 LSQLQDIYDG-----------KSFITTEGVFSTSGSITQLDKLAKITPE---KLIVDEAH 212
Query: 285 SFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVF 344
SFGVLG++GRG + I +G A G + + ++ + Y++
Sbjct: 213 SFGVLGKNGRGAINSFRISYKNCLICVFPLGKAFGGVGAVVCTTEAIAEYLIQFARNYIY 272
Query: 345 XXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLI 404
+ + LE D +L++N L D L + S SPI +
Sbjct: 273 TTALPPMILKAALIQLKNLENVNDNRARLQQNITFFNE-LCDAKDLELVSKDLSPIRSIQ 331
Query: 405 LEKSTGSMKNDLQLLED 421
L + +++ +L E+
Sbjct: 332 LNNANLAIRLKDKLFEN 348
>pdb|2BWO|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWP|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
Length = 401
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 115/243 (47%), Gaps = 19/243 (7%)
Query: 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG 168
+++ + +YLG+ H +L + ALE G GS G R GT H EA IA
Sbjct: 46 QDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ 105
Query: 169 TPDSILYSYG-------LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFK 221
++++S LST+ P G +I +D H + G+ + F+
Sbjct: 106 KEAALVFSSAYNANDATLSTLRVLFP-----GLIIYSDSLNHASMIEGIKRNAGPKRIFR 160
Query: 222 HNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLD 281
HND+ LR E + AD+ A KL I E+VY G P+ E+ + E++ ++D
Sbjct: 161 HNDVAHLR---ELIAADDPAAPKL---IAFESVYSMDGDFGPIKEICDIAEEFGALTYID 214
Query: 282 ESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSG 341
E ++ G+ G G G+ E G+ + +IDI + A GG+ SAR+VD R + G
Sbjct: 215 EVHAVGMYGPRGAGVAERDGL-MHRIDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPG 273
Query: 342 YVF 344
++F
Sbjct: 274 FIF 276
>pdb|2BWN|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWO|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
Length = 401
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 115/243 (47%), Gaps = 19/243 (7%)
Query: 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG 168
+++ + +YLG+ H +L + ALE G GS G R GT H EA IA
Sbjct: 46 QDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ 105
Query: 169 TPDSILYSYG-------LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFK 221
++++S LST+ P G +I +D H + G+ + F+
Sbjct: 106 KEAALVFSSAYNANDATLSTLRVLFP-----GLIIYSDSLNHASMIEGIKRNAGPKRIFR 160
Query: 222 HNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLD 281
HND+ LR E + AD+ A KL I E+VY G P+ E+ + E++ ++D
Sbjct: 161 HNDVAHLR---ELIAADDPAAPKL---IAFESVYSMDGDFGPIKEICDIAEEFGALTYID 214
Query: 282 ESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSG 341
E ++ G+ G G G+ E G+ + +IDI + A GG+ SAR+VD R + G
Sbjct: 215 EVHAVGMYGPRGAGVAERDGL-MHRIDIFNGTLAXAYGVFGGYIAASARMVDAVRSYAPG 273
Query: 342 YVF 344
++F
Sbjct: 274 FIF 276
>pdb|1DJ9|A Chain A, Crystal Structure Of 8-Amino-7-Oxonanoate Synthase (Or
7-Keto- 8aminipelargonate Or Kapa Synthase) Complexed
With Plp And The Product 8(S)-Amino-7-Oxonanonoate (Or
Kapa). The Enzyme Of Biotin Biosynthetic Pathway.
pdb|1DJE|A Chain A, Crystal Structure Of The Plp-Bound Form Of
8-Amino-7-Oxonanoate Synthase
Length = 384
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/391 (24%), Positives = 168/391 (42%), Gaps = 34/391 (8%)
Query: 87 EEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGP 146
+ +R PV + AG + ++ +NF+S +YLGL H +++ + E++G+GS G
Sbjct: 18 DALRRRYPVAQ-GAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGS 76
Query: 147 RGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGI 206
G VH E +A++LG ++L+ G + + I K D I AD H +
Sbjct: 77 GHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASL 136
Query: 207 QNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDE 266
LS S + F HND+ L R+ A +++ +V E V+ G APL E
Sbjct: 137 LEAASLSPSQLRRFAHNDV----THLARLLASPCPGQQM---VVTEGVFSMDGDSAPLAE 189
Query: 267 LIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCT 326
+ ++ +++ + +D+++ GV+G GRG C + K +++ G G
Sbjct: 190 IQQVTQQHNGWLMVDDAHGTGVIGEQGRG---SCWLQKVKPELLVVTFGKGFGVSGAAVL 246
Query: 327 GSARVVDHQRLSSSGYVFXXXXXXXXXXXXITAIDVL--EENPDLITKLKKNTAILRTGL 384
S+ V D+ + ++ ++ V+ +E KL R G+
Sbjct: 247 CSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGV 306
Query: 385 SDI-HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD 443
D+ L+ + + P++ G LQL E L++ G +V +
Sbjct: 307 QDLPFTLADSCSAIQPLI-------VGDNSRALQLAEK-----LRQQGCWVTGIRPPT-- 352
Query: 444 KCRLPVGI---RLFVSAAHSEADLVKACESL 471
+P GI RL ++AAH D+ + E L
Sbjct: 353 ---VPAGIARLRLTLTAAHEMQDIDRLLEVL 380
>pdb|1BS0|A Chain A, Plp-dependent Acyl-coa Synthase
pdb|2G6W|A Chain A, Suicide Inhibition Of A-Oxamine Synthase: Structures Of
The Covalent Adducts Of 8-Amino-7-Oxonanoate Synthase
With Trifluoroalanine
Length = 384
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 92/384 (23%), Positives = 166/384 (43%), Gaps = 34/384 (8%)
Query: 94 PVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
PV + AG + ++ +NF+S +YLGL H +++ + E++G+GS G G
Sbjct: 25 PVAQ-GAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYS 83
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
VH E +A++LG ++L+ G + + I K D I AD H + LS
Sbjct: 84 VVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLS 143
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
S + F HND+ L R+ A +++ +V E V+ G APL E+ ++ ++
Sbjct: 144 PSQLRRFAHNDV----THLARLLASPCPGQQM---VVTEGVFSMDGDSAPLAEIQQVTQQ 196
Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
+ + +D+++ GV+G GRG C + K +++ G G S+ V D
Sbjct: 197 HNGWLMVDDAHGTGVIGEQGRG---SCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVAD 253
Query: 334 HQRLSSSGYVFXXXXXXXXXXXXITAIDVL--EENPDLITKLKKNTAILRTGLSDI-HGL 390
+ + ++ ++ V+ +E KL R G+ D+ L
Sbjct: 254 YLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTL 313
Query: 391 SIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVG 450
+ + + P++ G LQL E L++ G +V + + +P G
Sbjct: 314 ADSCSAIQPLI-------VGDNSRALQLAEK-----LRQQGCWV-----TAIRPPTVPAG 356
Query: 451 ---IRLFVSAAHSEADLVKACESL 471
+RL ++AAH D+ + E L
Sbjct: 357 TARLRLTLTAAHEMQDIDRLLEVL 380
>pdb|3HQT|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3HQT|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
Length = 409
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 119/274 (43%), Gaps = 22/274 (8%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVY 219
E R+AKF G + +L G + + C+ + D H + G + +
Sbjct: 110 EKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHP 169
Query: 220 FKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVF 279
F HN+ D LR ++R IVV+++Y G IAPL EL+ + +++ +
Sbjct: 170 FMHNNCDHLRMLIQRHGPG---------IIVVDSIYSTLGTIAPLAELVNISKEFGCALL 220
Query: 280 LDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSS 339
+DES+S G G +G GL G+ ++ +TA++ A G + V S
Sbjct: 221 VDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRAGAIWCNNEVNRCVPFIS 279
Query: 340 SGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP 399
+F T ++++E + L + LR GLS + GL+I S ES
Sbjct: 280 YPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL-GLTIRS--ESQ 336
Query: 400 IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVF 433
I+ L TG +N E + D+ L+ +GVF
Sbjct: 337 IIGL----ETGDERNT----EKVRDY-LESNGVF 361
>pdb|2WK7|A Chain A, Structure Of Apo Form Of Vibrio Cholerae Cqsa
pdb|2WK7|B Chain B, Structure Of Apo Form Of Vibrio Cholerae Cqsa
Length = 393
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 119/274 (43%), Gaps = 22/274 (8%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVY 219
E R+AKF G + +L G + + C+ + D H + G + +
Sbjct: 90 EKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHP 149
Query: 220 FKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVF 279
F HN+ D LR ++R IVV+++Y G IAPL EL+ + +++ +
Sbjct: 150 FMHNNCDHLRMLIQRHGPG---------IIVVDSIYSTLGTIAPLAELVNISKEFGCALL 200
Query: 280 LDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSS 339
+DES+S G G +G GL G+ ++ +TA++ A G + V S
Sbjct: 201 VDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRAGAIWCNNEVNRCVPFIS 259
Query: 340 SGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP 399
+F T ++++E + L + LR GLS + GL+I S ES
Sbjct: 260 YPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL-GLTIRS--ESQ 316
Query: 400 IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVF 433
I+ L TG +N E + D+ L+ +GVF
Sbjct: 317 IIGL----ETGDERNT----EKVRDY-LESNGVF 341
>pdb|2WK8|A Chain A, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK8|B Chain B, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK9|A Chain A, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WK9|B Chain B, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WKA|A Chain A, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
pdb|2WKA|B Chain B, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
Length = 389
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 119/274 (43%), Gaps = 22/274 (8%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVY 219
E R+AKF G + +L G + + C+ + D H + G + +
Sbjct: 90 EKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHP 149
Query: 220 FKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVF 279
F HN+ D LR ++R IVV+++Y G IAPL EL+ + +++ +
Sbjct: 150 FMHNNCDHLRMLIQRHGPG---------IIVVDSIYSTLGTIAPLAELVNISKEFGCALL 200
Query: 280 LDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSS 339
+DES+S G G +G GL G+ ++ +TA++ A G + V S
Sbjct: 201 VDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRAGAIWCNNEVNRCVPFIS 259
Query: 340 SGYVFXXXXXXXXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP 399
+F T ++++E + L + LR GLS + GL+I S ES
Sbjct: 260 YPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL-GLTIRS--ESQ 316
Query: 400 IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVF 433
I+ L TG +N E + D+ L+ +GVF
Sbjct: 317 IIGL----ETGDERNT----EKVRDY-LESNGVF 341
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 105/266 (39%), Gaps = 36/266 (13%)
Query: 220 FKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIR-LKEKYRFRV 278
++ND + LR L+R R +++ I+ E V N+G + P ++ ++ L E + V
Sbjct: 181 LEYNDPEGLREVLKR------RGEEIAA-IIFEPVVGNAGVLVPTEDFLKALHEAKAYGV 233
Query: 279 FLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLS 338
L + G TE G+ K D+VT +G L + R ++++
Sbjct: 234 LLIADEVMTGFRLAFGGATELLGL---KPDLVT--LGKILGGGLPAAAYAGRREIMEKVA 288
Query: 339 SSGYVFXXXXXX---XXXXXXITAIDVLEENPDLITKLKKNTAILRTGLSDI---HGLSI 392
G V+ + +++LEENP L+ A L GL ++ GL
Sbjct: 289 PLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPH 348
Query: 393 ASNPESPIVFLILEKS-----TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRL 447
N ++ + + + + D +L + L + G++ S
Sbjct: 349 TVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFH-GLLDRGIYWPPSNFEA------ 401
Query: 448 PVGIRLFVSAAHSEADLVKACESLKR 473
F+S AH E D+ K E+L++
Sbjct: 402 -----AFLSVAHREEDVEKTLEALRK 422
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 123/316 (38%), Gaps = 53/316 (16%)
Query: 188 CFCKKGD--LIVADEGVHW-------GIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTAD 238
C+ GD LI A GV G+ G+ + TV Y ND++S++ ++ D
Sbjct: 152 CYHGHGDSLLIKAGSGVATLGLPDSPGVPEGIAKNTITVPY---NDLESVKLAFQQFGED 208
Query: 239 NKRAKKLRRYIVVEAVYQNSGQIAPLDELIR----LKEKYRFRVFLDE-SNSFGVLGRSG 293
++VE V N G + P + ++ + E+Y + DE F V
Sbjct: 209 IAG-------VIVEPVAGNMGVVPPQEGFLQGLRDITEQYGSLLIFDEVMTGFRVDYNCA 261
Query: 294 RGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFXXXXXXXXX 353
+G + GV D + + +G L G G A ++ ++++ SG ++
Sbjct: 262 QG---YFGVTPD-LTCLGKVIGGGLPV--GAYGGKAEIM--EQIAPSGPIYQAGTLSGNP 313
Query: 354 XXXITAIDVLEE-NPDLITKLKKNTAILRTGLS---DIHGLSIASNPESPIVFLILEKS- 408
++ L++ PD K L G+S + HG+ N ++
Sbjct: 314 LAMTAGLETLKQLTPDSYKNFIKKGDRLEEGISKAAEAHGIPHTFNRAGSMIGFFFTNEP 373
Query: 409 ----TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADL 464
+ +DL+L + +GVF+ S+ LF+S AH++ D+
Sbjct: 374 VINYETAKASDLKLFASYYK-GMANEGVFLPPSQFE-----------GLFLSTAHTDEDI 421
Query: 465 VKACESLKRISAVVLR 480
++ +++ A + R
Sbjct: 422 ENTIQAAEKVFAEISR 437
>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|F Chain F, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|I Chain I, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|L Chain L, Structure Of The Haptoglobin-Haemoglobin Complex
Length = 347
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 274 YRFR-----VFLDESNSFGVLGRSGRGLTEH---CGVPVDKIDIVTAAMGHALATEGGFC 325
Y+ R V+ +SN +G L E CG P + +D V MG +L +G F
Sbjct: 56 YKLRTAGDGVYTLDSNKQWTNKVTGEKLPECEAVCGKPKNPVDQVQRIMGGSLDAKGSF- 114
Query: 326 TGSARVVDHQRLSS 339
A+++ H L+S
Sbjct: 115 PWQAKMISHHNLTS 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,003,726
Number of Sequences: 62578
Number of extensions: 517018
Number of successful extensions: 1121
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1065
Number of HSP's gapped (non-prelim): 26
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)