Query 011567
Match_columns 483
No_of_seqs 364 out of 3033
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 10:49:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w8t_A SPT, serine palmitoyltr 100.0 8.4E-48 2.9E-52 394.5 38.6 369 93-480 47-417 (427)
2 3tqx_A 2-amino-3-ketobutyrate 100.0 4.9E-44 1.7E-48 362.4 40.6 369 92-478 26-396 (399)
3 3kki_A CAI-1 autoinducer synth 100.0 1.3E-44 4.4E-49 368.6 32.9 357 97-477 46-403 (409)
4 1fc4_A 2-amino-3-ketobutyrate 100.0 1.9E-42 6.3E-47 351.4 39.5 370 91-478 26-397 (401)
5 4ao9_A Beta-phenylalanine amin 100.0 2.2E-43 7.6E-48 359.6 30.7 372 68-478 46-446 (454)
6 1bs0_A Protein (8-amino-7-oxon 100.0 3.1E-42 1.1E-46 347.8 37.9 360 92-474 22-383 (384)
7 4atq_A 4-aminobutyrate transam 100.0 4.1E-42 1.4E-46 351.8 36.2 378 67-477 28-454 (456)
8 3a2b_A Serine palmitoyltransfe 100.0 3.8E-41 1.3E-45 341.5 38.6 368 91-478 25-392 (398)
9 4e3q_A Pyruvate transaminase; 100.0 9.6E-42 3.3E-46 350.4 34.2 361 90-481 47-471 (473)
10 3i5t_A Aminotransferase; pyrid 100.0 2E-40 6.7E-45 344.0 36.2 357 92-480 36-456 (476)
11 2bwn_A 5-aminolevulinate synth 100.0 1.2E-40 4.1E-45 338.2 33.3 352 107-477 44-399 (401)
12 3hmu_A Aminotransferase, class 100.0 6.1E-41 2.1E-45 347.3 30.8 359 91-479 36-453 (472)
13 2oat_A Ornithine aminotransfer 100.0 2.3E-39 7.9E-44 332.8 32.5 365 63-477 37-438 (439)
14 3tfu_A Adenosylmethionine-8-am 100.0 4.8E-39 1.7E-43 331.8 32.7 374 63-478 27-453 (457)
15 3gju_A Putative aminotransfera 100.0 7.2E-39 2.5E-43 331.2 33.1 361 92-480 33-458 (460)
16 1z7d_A Ornithine aminotransfer 100.0 1.1E-38 3.7E-43 327.3 33.2 345 93-479 48-430 (433)
17 3dxv_A Alpha-amino-epsilon-cap 100.0 3.8E-39 1.3E-43 331.2 29.5 377 64-478 4-425 (439)
18 4a6r_A Omega transaminase; tra 100.0 1.6E-38 5.6E-43 328.5 33.4 358 91-480 31-451 (459)
19 3dod_A Adenosylmethionine-8-am 100.0 4.7E-39 1.6E-43 331.5 28.6 358 91-481 25-446 (448)
20 4ffc_A 4-aminobutyrate aminotr 100.0 9.1E-38 3.1E-42 322.2 36.1 363 91-480 45-451 (453)
21 3oks_A 4-aminobutyrate transam 100.0 1.8E-37 6E-42 319.9 35.7 357 91-477 42-450 (451)
22 3l44_A Glutamate-1-semialdehyd 100.0 1.6E-37 5.3E-42 318.8 35.0 354 91-480 36-432 (434)
23 3n5m_A Adenosylmethionine-8-am 100.0 1.8E-37 6.2E-42 320.0 33.4 360 91-477 30-451 (452)
24 2epj_A Glutamate-1-semialdehyd 100.0 1.3E-37 4.5E-42 319.3 32.1 353 92-479 38-432 (434)
25 4e77_A Glutamate-1-semialdehyd 100.0 2E-37 6.7E-42 317.6 31.8 351 91-477 34-428 (429)
26 3k28_A Glutamate-1-semialdehyd 100.0 4.3E-37 1.5E-41 315.1 32.1 373 68-478 9-427 (429)
27 3fq8_A Glutamate-1-semialdehyd 100.0 5.4E-37 1.9E-41 314.1 32.1 351 91-477 33-426 (427)
28 3nx3_A Acoat, acetylornithine 100.0 6E-37 2.1E-41 310.4 31.8 342 91-477 17-394 (395)
29 3i4j_A Aminotransferase, class 100.0 6.7E-37 2.3E-41 313.7 31.8 365 91-479 10-429 (430)
30 2pb2_A Acetylornithine/succiny 100.0 5.2E-37 1.8E-41 313.6 29.0 345 92-479 39-419 (420)
31 2e7u_A Glutamate-1-semialdehyd 100.0 1.8E-36 6.1E-41 310.0 31.1 348 92-474 34-423 (424)
32 1ohv_A 4-aminobutyrate aminotr 100.0 1.6E-37 5.3E-42 321.9 23.2 349 92-477 45-470 (472)
33 4a0g_A Adenosylmethionine-8-am 100.0 9.3E-39 3.2E-43 348.7 14.6 360 92-478 356-828 (831)
34 2yky_A Beta-transaminase; tran 100.0 1.7E-40 5.9E-45 340.6 0.0 347 92-478 82-460 (465)
35 3ruy_A Ornithine aminotransfer 100.0 6.1E-36 2.1E-40 302.6 28.5 337 92-475 18-391 (392)
36 1sff_A 4-aminobutyrate aminotr 100.0 3.8E-35 1.3E-39 300.0 33.1 356 93-478 24-424 (426)
37 2cjg_A L-lysine-epsilon aminot 100.0 3.7E-35 1.3E-39 302.4 31.6 364 63-478 14-448 (449)
38 3a8u_X Omega-amino acid--pyruv 100.0 3.2E-35 1.1E-39 302.9 30.8 354 92-478 32-447 (449)
39 1zod_A DGD, 2,2-dialkylglycine 100.0 4.2E-35 1.4E-39 300.5 30.2 359 92-478 25-432 (433)
40 2cy8_A D-phgat, D-phenylglycin 100.0 7.5E-35 2.6E-39 300.5 31.2 349 92-479 39-436 (453)
41 4adb_A Succinylornithine trans 100.0 1.3E-34 4.3E-39 294.1 30.2 347 92-480 21-402 (406)
42 3nra_A Aspartate aminotransfer 100.0 2.9E-34 9.9E-39 291.4 29.0 359 94-478 20-405 (407)
43 2eo5_A 419AA long hypothetical 100.0 1.6E-33 5.4E-38 287.7 34.2 341 92-477 24-417 (419)
44 1s0a_A Adenosylmethionine-8-am 100.0 1.1E-33 3.8E-38 289.6 33.2 345 93-477 25-423 (429)
45 2ord_A Acoat, acetylornithine 100.0 4.4E-34 1.5E-38 289.5 27.5 342 91-477 21-396 (397)
46 1vef_A Acetylornithine/acetyl- 100.0 1.4E-33 4.8E-38 285.5 26.9 338 92-475 27-394 (395)
47 3l8a_A METC, putative aminotra 100.0 3.1E-32 1.1E-36 278.2 31.7 354 93-476 42-420 (421)
48 3dzz_A Putative pyridoxal 5'-p 100.0 7.8E-32 2.7E-36 271.9 32.3 355 94-478 11-389 (391)
49 3fdb_A Beta C-S lyase, putativ 100.0 3.6E-32 1.2E-36 273.1 25.3 345 96-477 9-375 (377)
50 3kax_A Aminotransferase, class 100.0 7.3E-31 2.5E-35 264.0 32.3 352 93-475 6-382 (383)
51 2eh6_A Acoat, acetylornithine 100.0 3.2E-31 1.1E-35 266.1 26.4 333 92-474 10-374 (375)
52 2zc0_A Alanine glyoxylate tran 100.0 1.5E-30 5.1E-35 264.2 31.1 349 108-480 33-406 (407)
53 4dq6_A Putative pyridoxal phos 100.0 1.8E-30 6.1E-35 261.9 29.4 350 94-475 11-390 (391)
54 2z61_A Probable aspartate amin 100.0 6.3E-31 2.1E-35 263.7 25.8 330 107-476 27-369 (370)
55 1j32_A Aspartate aminotransfer 100.0 1.4E-30 4.9E-35 262.7 28.4 340 107-478 28-387 (388)
56 1kmj_A Selenocysteine lyase; p 100.0 9.1E-30 3.1E-34 257.8 33.8 342 106-478 19-405 (406)
57 3ly1_A Putative histidinol-pho 100.0 6.8E-30 2.3E-34 254.4 32.0 332 100-477 6-351 (354)
58 1t3i_A Probable cysteine desul 100.0 6.8E-30 2.3E-34 260.0 32.0 342 106-478 24-413 (420)
59 1c7n_A Cystalysin; transferase 100.0 2.8E-30 9.5E-35 261.6 28.8 352 95-480 9-395 (399)
60 2dou_A Probable N-succinyldiam 100.0 1.4E-29 4.7E-34 254.5 31.1 332 107-475 23-375 (376)
61 1o4s_A Aspartate aminotransfer 100.0 5.6E-30 1.9E-34 258.7 27.8 328 107-476 39-387 (389)
62 1d2f_A MALY protein; aminotran 100.0 6.2E-29 2.1E-33 251.0 34.9 348 96-478 9-389 (390)
63 3dyd_A Tyrosine aminotransfera 100.0 1.7E-29 5.9E-34 258.4 30.7 342 107-479 52-425 (427)
64 3h14_A Aminotransferase, class 100.0 1E-29 3.4E-34 256.9 28.1 333 106-478 28-382 (391)
65 3aow_A Putative uncharacterize 100.0 1.7E-29 5.9E-34 259.9 30.2 348 108-480 75-447 (448)
66 2gb3_A Aspartate aminotransfer 100.0 6.6E-30 2.3E-34 259.9 26.7 336 107-480 41-404 (409)
67 1gd9_A Aspartate aminotransfer 100.0 3.1E-29 1.1E-33 253.0 31.1 333 110-477 27-385 (389)
68 1vp4_A Aminotransferase, putat 100.0 1.2E-29 4.2E-34 259.3 28.1 351 108-481 42-421 (425)
69 3ffh_A Histidinol-phosphate am 100.0 6.6E-29 2.2E-33 248.2 31.7 319 108-474 31-362 (363)
70 2zyj_A Alpha-aminodipate amino 100.0 1.1E-29 3.8E-34 257.2 26.1 343 108-480 31-395 (397)
71 1v2d_A Glutamine aminotransfer 100.0 2.1E-29 7.3E-34 253.6 27.8 328 110-479 26-372 (381)
72 1xi9_A Putative transaminase; 100.0 1.6E-29 5.3E-34 256.9 26.8 338 107-479 36-404 (406)
73 2x5d_A Probable aminotransfera 100.0 3.3E-29 1.1E-33 255.0 29.3 344 106-478 34-398 (412)
74 3lws_A Aromatic amino acid bet 100.0 2.7E-30 9.4E-35 257.6 19.4 335 109-475 3-356 (357)
75 3piu_A 1-aminocyclopropane-1-c 100.0 5.7E-29 2E-33 255.1 29.0 309 156-479 88-433 (435)
76 1yiz_A Kynurenine aminotransfe 100.0 7.6E-29 2.6E-33 253.6 29.1 349 109-475 37-426 (429)
77 1eg5_A Aminotransferase; PLP-d 100.0 3.9E-28 1.3E-32 243.9 32.1 336 110-479 3-377 (384)
78 3ei9_A LL-diaminopimelate amin 100.0 3.7E-29 1.3E-33 256.2 24.8 339 106-475 53-425 (432)
79 2dr1_A PH1308 protein, 386AA l 100.0 3.8E-28 1.3E-32 244.3 31.8 325 110-478 21-379 (386)
80 3op7_A Aminotransferase class 100.0 1.9E-29 6.7E-34 253.2 22.3 328 109-478 27-371 (375)
81 3g0t_A Putative aminotransfera 100.0 1E-28 3.4E-33 253.1 27.9 335 106-477 41-436 (437)
82 2o1b_A Aminotransferase, class 100.0 1.4E-28 4.8E-33 249.8 28.6 335 107-476 45-401 (404)
83 3jtx_A Aminotransferase; NP_28 100.0 3.6E-28 1.2E-32 245.7 31.2 345 100-475 20-395 (396)
84 3qgu_A LL-diaminopimelate amin 100.0 3.2E-29 1.1E-33 258.0 23.6 342 106-477 66-439 (449)
85 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 8.2E-30 2.8E-34 255.2 18.0 323 124-477 21-369 (371)
86 3get_A Histidinol-phosphate am 100.0 2.8E-28 9.7E-33 243.8 28.6 320 108-475 29-364 (365)
87 1u08_A Hypothetical aminotrans 100.0 6.1E-28 2.1E-32 243.3 31.2 336 110-473 31-385 (386)
88 3f9t_A TDC, L-tyrosine decarbo 100.0 2.7E-28 9.2E-33 245.9 28.4 317 124-476 42-396 (397)
89 1bw0_A TAT, protein (tyrosine 100.0 2.5E-28 8.5E-33 248.7 28.4 342 109-478 33-413 (416)
90 3hdo_A Histidinol-phosphate am 100.0 3.7E-28 1.3E-32 242.6 29.0 327 107-478 24-355 (360)
91 3cai_A Possible aminotransfera 100.0 5.1E-28 1.8E-32 245.4 30.1 331 108-474 26-405 (406)
92 3fvs_A Kynurenine--oxoglutarat 100.0 3.1E-28 1.1E-32 248.3 28.6 349 108-477 27-421 (422)
93 3lvm_A Cysteine desulfurase; s 100.0 1.8E-28 6.3E-33 250.0 26.5 336 109-479 23-400 (423)
94 2o0r_A RV0858C (N-succinyldiam 100.0 5.9E-28 2E-32 245.6 29.6 342 110-478 26-396 (411)
95 3ezs_A Aminotransferase ASPB; 100.0 2.4E-28 8.3E-33 245.2 26.2 333 107-477 22-374 (376)
96 4hvk_A Probable cysteine desul 100.0 4.4E-28 1.5E-32 243.0 27.4 334 111-480 3-375 (382)
97 3euc_A Histidinol-phosphate am 100.0 1.4E-27 4.8E-32 238.9 30.5 320 109-475 30-365 (367)
98 3ftb_A Histidinol-phosphate am 100.0 1.4E-27 5E-32 238.1 30.0 321 106-476 23-359 (361)
99 1elu_A L-cysteine/L-cystine C- 100.0 5.5E-28 1.9E-32 243.4 27.1 317 120-474 25-388 (390)
100 1m32_A 2-aminoethylphosphonate 100.0 4.6E-28 1.6E-32 241.6 26.0 323 110-476 4-363 (366)
101 3e2y_A Kynurenine-oxoglutarate 100.0 1.1E-27 3.8E-32 243.3 28.8 341 109-473 23-408 (410)
102 1lc5_A COBD, L-threonine-O-3-p 100.0 1.3E-27 4.4E-32 239.1 28.8 327 106-478 21-360 (364)
103 3b46_A Aminotransferase BNA3; 100.0 3.3E-28 1.1E-32 250.4 24.9 348 107-473 55-442 (447)
104 3cq5_A Histidinol-phosphate am 100.0 5.4E-27 1.8E-31 235.1 32.8 317 112-476 33-366 (369)
105 1vjo_A Alanine--glyoxylate ami 100.0 1.7E-27 5.8E-32 240.5 29.0 323 109-475 34-392 (393)
106 3fkd_A L-threonine-O-3-phospha 100.0 3.8E-27 1.3E-31 234.3 29.7 330 98-477 3-341 (350)
107 4eb5_A Probable cysteine desul 100.0 1.9E-27 6.4E-32 238.9 26.8 335 111-480 3-375 (382)
108 3ele_A Amino transferase; RER0 100.0 2.1E-27 7.3E-32 240.2 27.4 334 107-478 33-396 (398)
109 1b5p_A Protein (aspartate amin 100.0 9.3E-27 3.2E-31 234.7 31.0 333 108-476 30-383 (385)
110 2vi8_A Serine hydroxymethyltra 100.0 2E-27 6.7E-32 240.9 26.0 338 109-478 24-387 (405)
111 3isl_A Purine catabolism prote 100.0 4.4E-27 1.5E-31 239.1 28.6 317 126-478 20-390 (416)
112 3b1d_A Betac-S lyase; HET: PLP 99.9 6.2E-31 2.1E-35 265.9 0.0 348 95-476 14-391 (392)
113 3nnk_A Ureidoglycine-glyoxylat 100.0 1.1E-26 3.9E-31 235.6 31.0 315 124-478 24-390 (411)
114 1v72_A Aldolase; PLP-dependent 100.0 1.4E-27 4.8E-32 237.5 23.7 331 109-478 7-353 (356)
115 3zrp_A Serine-pyruvate aminotr 100.0 8E-27 2.7E-31 234.3 29.4 311 124-479 13-364 (384)
116 1qz9_A Kynureninase; kynurenin 100.0 7.1E-27 2.4E-31 237.7 28.2 326 107-478 27-402 (416)
117 2z9v_A Aspartate aminotransfer 100.0 9.9E-27 3.4E-31 234.7 28.7 326 110-478 10-371 (392)
118 3t18_A Aminotransferase class 100.0 5.2E-27 1.8E-31 238.8 26.5 335 108-479 36-411 (413)
119 1iay_A ACC synthase 2, 1-amino 100.0 3.3E-26 1.1E-30 234.0 32.5 336 110-477 37-426 (428)
120 3kgw_A Alanine-glyoxylate amin 100.0 1.2E-26 4.1E-31 233.8 28.1 317 124-480 34-390 (393)
121 1jg8_A L-ALLO-threonine aldola 100.0 4.4E-27 1.5E-31 233.4 24.3 330 109-478 3-346 (347)
122 1svv_A Threonine aldolase; str 100.0 2.8E-27 9.6E-32 235.4 21.9 329 110-478 14-358 (359)
123 2huf_A Alanine glyoxylate amin 100.0 3.1E-26 1.1E-30 231.1 29.6 316 124-479 30-384 (393)
124 2r2n_A Kynurenine/alpha-aminoa 100.0 9.2E-26 3.1E-30 230.6 33.2 315 149-478 77-424 (425)
125 3rq1_A Aminotransferase class 100.0 1.5E-26 5.1E-31 235.8 27.2 337 108-478 37-415 (418)
126 3gbx_A Serine hydroxymethyltra 100.0 6E-27 2.1E-31 238.3 23.8 328 124-477 42-395 (420)
127 2x5f_A Aspartate_tyrosine_phen 100.0 2.4E-27 8.3E-32 242.6 20.9 335 109-478 47-429 (430)
128 3p1t_A Putative histidinol-pho 100.0 1.2E-25 4E-30 222.0 32.3 311 107-476 14-335 (337)
129 3tcm_A Alanine aminotransferas 100.0 7.7E-26 2.6E-30 235.8 32.2 346 125-481 108-497 (500)
130 1iug_A Putative aspartate amin 100.0 2.6E-26 8.9E-31 227.9 27.0 311 124-480 12-350 (352)
131 2dkj_A Serine hydroxymethyltra 100.0 1.4E-26 4.9E-31 234.7 25.4 336 109-477 23-387 (407)
132 2rfv_A Methionine gamma-lyase; 100.0 1.4E-26 4.6E-31 234.7 24.8 290 152-474 62-396 (398)
133 3ecd_A Serine hydroxymethyltra 99.9 5.6E-26 1.9E-30 231.6 28.5 339 110-478 33-397 (425)
134 3mad_A Sphingosine-1-phosphate 99.9 4.9E-26 1.7E-30 238.3 28.8 340 111-480 93-471 (514)
135 3asa_A LL-diaminopimelate amin 99.9 2.5E-26 8.7E-31 232.8 25.4 341 108-478 32-393 (400)
136 3vax_A Putative uncharacterize 99.9 3.3E-27 1.1E-31 238.8 18.5 335 107-477 19-399 (400)
137 3h7f_A Serine hydroxymethyltra 99.9 3.8E-26 1.3E-30 235.0 26.4 338 110-477 46-413 (447)
138 2a7v_A Serine hydroxymethyltra 99.9 1.5E-26 5.1E-31 238.5 22.4 335 111-477 56-440 (490)
139 1ax4_A Tryptophanase; tryptoph 99.9 1.1E-25 3.7E-30 232.7 28.7 350 107-478 41-441 (467)
140 1fg7_A Histidinol phosphate am 99.9 1.4E-25 4.7E-30 223.8 28.2 308 109-474 29-354 (356)
141 3mc6_A Sphingosine-1-phosphate 99.9 6.2E-26 2.1E-30 236.5 25.7 336 116-480 66-439 (497)
142 1b9h_A AHBA synthase, protein 99.9 2.4E-25 8.2E-30 224.5 29.0 315 125-477 16-387 (388)
143 3f0h_A Aminotransferase; RER07 99.9 1.2E-25 4.2E-30 225.3 26.0 313 124-477 30-373 (376)
144 2yrr_A Aminotransferase, class 99.9 7.7E-26 2.6E-30 224.3 24.2 311 124-477 11-352 (353)
145 1gc0_A Methionine gamma-lyase; 99.9 1.7E-25 5.7E-30 226.7 26.3 288 152-474 63-397 (398)
146 2oga_A Transaminase; PLP-depen 99.9 8.3E-26 2.8E-30 228.9 24.0 323 109-478 30-396 (399)
147 3e9k_A Kynureninase; kynurenin 99.9 8.7E-26 3E-30 233.5 23.9 324 118-478 74-461 (465)
148 3n0l_A Serine hydroxymethyltra 99.9 3.5E-25 1.2E-29 225.2 28.0 336 110-477 26-388 (417)
149 4eu1_A Mitochondrial aspartate 99.9 2.1E-26 7.2E-31 234.0 18.8 321 109-475 41-408 (409)
150 2ez2_A Beta-tyrosinase, tyrosi 99.9 9.3E-25 3.2E-29 225.1 31.3 343 107-478 40-431 (456)
151 1e5e_A MGL, methionine gamma-l 99.9 1.1E-24 3.6E-29 221.2 30.4 290 153-481 61-398 (404)
152 2ay1_A Aroat, aromatic amino a 99.9 1.1E-26 3.8E-31 234.7 15.7 324 108-474 25-392 (394)
153 2q7w_A Aspartate aminotransfer 99.9 2.5E-26 8.5E-31 232.2 18.0 325 107-474 24-395 (396)
154 1qgn_A Protein (cystathionine 99.9 7.5E-25 2.6E-29 224.0 29.1 288 153-477 113-444 (445)
155 1cs1_A CGS, protein (cystathio 99.9 8.9E-25 3E-29 220.3 29.2 285 154-474 52-383 (386)
156 2qma_A Diaminobutyrate-pyruvat 99.9 4.9E-25 1.7E-29 229.8 27.9 346 112-477 96-495 (497)
157 1ajs_A Aspartate aminotransfer 99.9 8.4E-26 2.9E-30 229.6 21.5 327 107-477 28-410 (412)
158 3frk_A QDTB; aminotransferase, 99.9 3.2E-25 1.1E-29 222.4 25.2 307 126-478 17-368 (373)
159 2fnu_A Aminotransferase; prote 99.9 1.4E-24 4.9E-29 217.4 29.5 315 124-478 11-372 (375)
160 2c81_A Glutamine-2-deoxy-scyll 99.9 1.6E-24 5.5E-29 220.8 30.2 323 125-478 15-414 (418)
161 3uwc_A Nucleotide-sugar aminot 99.9 4.9E-25 1.7E-29 220.9 25.7 305 128-477 21-370 (374)
162 1pff_A Methionine gamma-lyase; 99.9 3.1E-25 1.1E-29 218.7 23.9 281 158-474 2-330 (331)
163 2cb1_A O-acetyl homoserine sul 99.9 3.3E-24 1.1E-28 218.1 31.5 283 154-473 56-411 (412)
164 3qhx_A Cystathionine gamma-syn 99.9 2E-24 6.8E-29 218.3 29.0 286 153-471 65-391 (392)
165 2ch1_A 3-hydroxykynurenine tra 99.9 2.4E-24 8E-29 217.5 29.5 295 154-480 51-385 (396)
166 3ffr_A Phosphoserine aminotran 99.9 4.1E-24 1.4E-28 212.7 29.8 310 124-475 15-361 (362)
167 3hbx_A GAD 1, glutamate decarb 99.9 1.3E-24 4.4E-29 226.5 26.9 346 106-480 52-446 (502)
168 3ihj_A Alanine aminotransferas 99.9 2.4E-24 8.1E-29 224.3 28.7 346 125-482 103-497 (498)
169 4e1o_A HDC, histidine decarbox 99.9 1E-23 3.5E-28 218.7 33.4 305 154-480 118-480 (481)
170 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 4.3E-24 1.5E-28 219.0 30.3 326 106-476 28-434 (437)
171 2oqx_A Tryptophanase; lyase, p 99.9 5E-25 1.7E-29 227.8 22.9 346 107-478 39-442 (467)
172 1mdo_A ARNB aminotransferase; 99.9 3E-24 1E-28 216.7 28.0 323 110-478 9-386 (393)
173 1yaa_A Aspartate aminotransfer 99.9 2.3E-25 7.8E-30 226.5 19.7 327 108-477 28-410 (412)
174 1rv3_A Serine hydroxymethyltra 99.9 5.6E-25 1.9E-29 228.3 22.9 336 110-477 45-430 (483)
175 3if2_A Aminotransferase; YP_26 99.9 1.6E-24 5.4E-29 222.5 25.6 345 110-481 32-443 (444)
176 4f4e_A Aromatic-amino-acid ami 99.9 5.6E-25 1.9E-29 224.3 22.1 327 109-475 49-419 (420)
177 2bkw_A Alanine-glyoxylate amin 99.9 4E-24 1.4E-28 214.8 28.0 288 155-477 39-383 (385)
178 3vp6_A Glutamate decarboxylase 99.9 1.7E-23 5.8E-28 218.5 33.4 313 154-479 135-506 (511)
179 3k40_A Aromatic-L-amino-acid d 99.9 7.4E-24 2.5E-28 219.3 29.9 304 155-481 114-474 (475)
180 3fsl_A Aromatic-amino-acid ami 99.9 6E-25 2.1E-29 222.1 20.9 323 109-474 26-396 (397)
181 3pj0_A LMO0305 protein; struct 99.9 4.9E-25 1.7E-29 219.7 19.1 313 125-474 28-358 (359)
182 1uu1_A Histidinol-phosphate am 99.9 3.7E-24 1.3E-28 211.5 25.1 303 109-474 19-334 (335)
183 3ke3_A Putative serine-pyruvat 99.9 4.2E-24 1.4E-28 214.9 25.6 295 154-479 35-377 (379)
184 2po3_A 4-dehydrase; external a 99.9 2.4E-23 8.1E-28 212.6 31.4 324 113-478 20-386 (424)
185 3f6t_A Aspartate aminotransfer 99.9 1.6E-24 5.6E-29 227.3 22.6 342 110-480 104-527 (533)
186 3acz_A Methionine gamma-lyase; 99.9 2.1E-23 7.2E-28 210.6 28.5 282 153-471 58-386 (389)
187 3dr4_A Putative perosamine syn 99.9 8.6E-24 3E-28 213.3 25.5 310 125-475 35-390 (391)
188 2fq6_A Cystathionine beta-lyas 99.9 6.5E-24 2.2E-28 215.6 24.4 290 153-473 81-413 (415)
189 3nyt_A Aminotransferase WBPE; 99.9 1.4E-23 4.8E-28 210.1 26.4 303 126-474 16-360 (367)
190 3ndn_A O-succinylhomoserine su 99.9 3E-23 1E-27 210.9 28.5 290 153-475 80-413 (414)
191 3b8x_A WBDK, pyridoxamine 5-ph 99.9 4.8E-23 1.6E-27 207.9 29.6 308 124-471 13-389 (390)
192 1n8p_A Cystathionine gamma-lya 99.9 9.2E-24 3.2E-28 213.4 24.1 286 154-474 55-391 (393)
193 7aat_A Aspartate aminotransfer 99.9 2.9E-24 1E-28 217.5 20.1 322 110-475 29-400 (401)
194 1o69_A Aminotransferase; struc 99.9 4.9E-23 1.7E-27 208.2 29.0 322 125-476 11-385 (394)
195 2aeu_A Hypothetical protein MJ 99.9 5.6E-24 1.9E-28 213.6 21.9 326 108-480 26-373 (374)
196 3meb_A Aspartate aminotransfer 99.9 5.1E-24 1.8E-28 219.1 21.5 330 107-477 46-443 (448)
197 3a9z_A Selenocysteine lyase; P 99.9 1.6E-23 5.3E-28 214.2 24.8 339 107-479 17-429 (432)
198 2ctz_A O-acetyl-L-homoserine s 99.9 3.3E-23 1.1E-27 211.3 26.3 231 153-406 57-345 (421)
199 3ri6_A O-acetylhomoserine sulf 99.9 2.8E-23 9.6E-28 211.7 25.7 230 153-406 81-355 (430)
200 3g7q_A Valine-pyruvate aminotr 99.9 2.9E-23 1E-27 211.1 25.8 340 109-480 31-415 (417)
201 3cog_A Cystathionine gamma-lya 99.9 3.8E-23 1.3E-27 209.6 26.1 285 154-475 67-399 (403)
202 1wyu_B Glycine dehydrogenase s 99.9 3.8E-23 1.3E-27 214.1 26.6 319 124-477 78-440 (474)
203 1w23_A Phosphoserine aminotran 99.9 6.2E-24 2.1E-28 211.6 19.9 320 109-477 2-359 (360)
204 3ez1_A Aminotransferase MOCR f 99.9 2.5E-23 8.7E-28 212.1 24.8 343 111-479 27-416 (423)
205 3ppl_A Aspartate aminotransfer 99.9 1.6E-23 5.5E-28 214.0 22.8 309 150-480 74-422 (427)
206 2c0r_A PSAT, phosphoserine ami 99.9 5E-23 1.7E-27 205.5 24.7 307 124-477 15-360 (362)
207 3nmy_A Xometc, cystathionine g 99.9 1.3E-22 4.4E-27 205.3 27.3 228 153-406 66-321 (400)
208 2jis_A Cysteine sulfinic acid 99.9 1E-21 3.5E-26 205.5 33.7 312 152-477 146-514 (515)
209 2dgk_A GAD-beta, GADB, glutama 99.9 2.6E-22 8.9E-27 206.6 28.4 330 124-480 54-436 (452)
210 2okj_A Glutamate decarboxylase 99.9 1.2E-21 3.9E-26 204.6 33.4 313 154-479 132-503 (504)
211 3d6k_A Putative aminotransfera 99.9 6.6E-23 2.3E-27 209.1 22.3 344 111-480 34-420 (422)
212 3jzl_A Putative cystathionine 99.9 1.3E-22 4.4E-27 205.2 23.3 240 155-426 60-335 (409)
213 3hvy_A Cystathionine beta-lyas 99.9 3.3E-22 1.1E-26 203.0 26.2 242 155-426 75-352 (427)
214 1c4k_A Protein (ornithine deca 99.9 6.4E-23 2.2E-27 220.5 22.0 315 150-478 169-566 (730)
215 3ju7_A Putative PLP-dependent 99.9 1E-21 3.5E-26 197.3 29.4 318 124-477 14-374 (377)
216 1js3_A DDC;, DOPA decarboxylas 99.9 5E-21 1.7E-25 198.9 33.9 304 154-480 113-476 (486)
217 3i16_A Aluminum resistance pro 99.9 3.9E-22 1.3E-26 202.4 24.4 242 155-426 74-352 (427)
218 1ibj_A CBL, cystathionine beta 99.9 4.5E-22 1.5E-26 204.9 24.1 288 154-477 133-461 (464)
219 3n75_A LDC, lysine decarboxyla 99.9 7.1E-22 2.4E-26 210.7 23.5 304 153-477 194-559 (715)
220 2x3l_A ORN/Lys/Arg decarboxyla 99.9 9.6E-22 3.3E-26 201.9 20.4 283 152-477 55-352 (446)
221 2vyc_A Biodegradative arginine 99.9 2.1E-21 7.2E-26 210.5 23.6 315 151-478 202-605 (755)
222 3ht4_A Aluminum resistance pro 99.9 2.1E-21 7.2E-26 197.9 20.3 243 154-428 65-343 (431)
223 2z67_A O-phosphoseryl-tRNA(SEC 99.9 3.7E-20 1.3E-24 190.7 24.3 296 153-475 132-455 (456)
224 2fyf_A PSAT, phosphoserine ami 99.8 3.4E-20 1.2E-24 187.5 21.0 283 154-477 78-397 (398)
225 3bwn_A AT1G70560, L-tryptophan 99.8 2.5E-21 8.6E-26 195.5 12.6 274 157-477 71-386 (391)
226 2zy4_A L-aspartate beta-decarb 99.8 5.2E-20 1.8E-24 193.3 21.9 340 111-480 106-524 (546)
227 3k7y_A Aspartate aminotransfer 99.8 9.1E-20 3.1E-24 184.5 20.6 320 110-477 30-404 (405)
228 1wyu_A Glycine dehydrogenase ( 99.8 4E-19 1.4E-23 182.0 25.6 322 111-475 65-437 (438)
229 3e77_A Phosphoserine aminotran 99.8 1.6E-19 5.4E-24 180.0 19.5 315 124-477 24-374 (377)
230 2hox_A ALLIIN lyase 1; cystein 99.8 3.9E-20 1.3E-24 188.8 14.9 324 106-476 53-423 (427)
231 3ou5_A Serine hydroxymethyltra 99.8 4.4E-18 1.5E-22 168.5 24.5 337 110-476 55-439 (490)
232 3m5u_A Phosphoserine aminotran 99.8 1.1E-17 3.6E-22 166.2 24.9 318 109-477 4-359 (361)
233 3qm2_A Phosphoserine aminotran 99.8 7.5E-19 2.6E-23 176.0 13.0 318 110-477 28-384 (386)
234 4h51_A Aspartate aminotransfer 99.8 3.4E-17 1.2E-21 165.8 20.0 311 126-480 65-419 (420)
235 3bc8_A O-phosphoseryl-tRNA(SEC 99.7 2.2E-15 7.5E-20 151.9 25.6 386 58-481 22-446 (450)
236 3hl2_A O-phosphoseryl-tRNA(SEC 99.7 7.2E-15 2.5E-19 146.3 24.8 297 167-481 129-464 (501)
237 1tks_A 3,4-dihydroxy-2-butanon 48.1 18 0.0006 31.7 4.2 36 245-280 159-194 (204)
238 3mio_A DHBP synthase, 3,4-dihy 43.4 31 0.0011 30.2 5.1 36 245-280 158-194 (206)
239 1gcy_A Glucan 1,4-alpha-maltot 41.2 30 0.001 35.1 5.5 27 259-285 90-116 (527)
240 1g57_A DHBP synthase, 3,4-dihy 40.0 37 0.0012 30.0 5.0 35 245-280 167-201 (217)
241 3nvt_A 3-deoxy-D-arabino-heptu 39.7 1.2E+02 0.0041 29.3 9.2 80 203-287 238-323 (385)
242 1snn_A DHBP synthase, 3,4-dihy 37.4 36 0.0012 30.3 4.6 35 245-280 178-212 (227)
243 2gjh_A Designed protein; oblig 37.0 47 0.0016 21.4 3.8 28 450-478 3-30 (62)
244 1zco_A 2-dehydro-3-deoxyphosph 36.1 1.2E+02 0.004 27.6 8.1 59 224-287 142-204 (262)
245 3edf_A FSPCMD, cyclomaltodextr 34.9 37 0.0013 35.2 5.0 27 259-285 196-222 (601)
246 3ghf_A Septum site-determining 34.5 1.7E+02 0.0057 23.0 7.9 57 216-279 18-78 (120)
247 3dhu_A Alpha-amylase; structur 33.1 28 0.00097 34.4 3.7 21 264-284 86-106 (449)
248 1vb5_A Translation initiation 33.0 2.8E+02 0.0096 25.2 10.8 119 156-287 96-224 (276)
249 3vup_A Beta-1,4-mannanase; TIM 28.5 57 0.002 29.9 4.9 20 264-283 92-111 (351)
250 1vhx_A Putative holliday junct 28.3 61 0.0021 26.7 4.3 53 224-285 43-101 (150)
251 4gqr_A Pancreatic alpha-amylas 27.9 27 0.00091 34.8 2.5 27 259-285 74-100 (496)
252 1lwj_A 4-alpha-glucanotransfer 27.3 37 0.0013 33.5 3.4 26 259-284 67-92 (441)
253 4aie_A Glucan 1,6-alpha-glucos 26.4 39 0.0013 34.2 3.4 27 259-285 77-103 (549)
254 1k4i_A 3,4-dihydroxy-2-butanon 25.9 65 0.0022 28.7 4.2 36 245-280 167-212 (233)
255 2dh2_A 4F2 cell-surface antige 25.5 45 0.0015 32.7 3.6 34 249-285 72-105 (424)
256 4aee_A Alpha amylase, catalyti 25.3 44 0.0015 35.3 3.6 26 259-284 309-334 (696)
257 3fwt_A Macrophage migration in 24.6 1E+02 0.0034 24.7 4.9 32 451-482 24-55 (133)
258 1wza_A Alpha-amylase A; hydrol 24.3 48 0.0016 33.1 3.6 26 259-284 79-104 (488)
259 1g94_A Alpha-amylase; beta-alp 24.1 32 0.0011 34.0 2.2 26 259-284 62-87 (448)
260 2x4k_A 4-oxalocrotonate tautom 23.8 1.2E+02 0.0042 19.8 4.7 31 451-481 6-36 (63)
261 3t7y_A YOP proteins translocat 23.3 93 0.0032 23.5 4.1 21 264-284 44-64 (97)
262 2z1k_A (NEO)pullulanase; hydro 22.9 48 0.0017 32.9 3.3 26 259-284 94-119 (475)
263 1wpc_A Glucan 1,4-alpha-maltoh 22.7 41 0.0014 33.6 2.7 26 259-284 80-105 (485)
264 2guy_A Alpha-amylase A; (beta- 22.5 52 0.0018 32.7 3.4 27 259-285 95-121 (478)
265 3ff4_A Uncharacterized protein 22.2 54 0.0018 25.9 2.8 22 265-289 95-116 (122)
266 3bh4_A Alpha-amylase; calcium, 22.1 43 0.0015 33.4 2.7 26 259-284 76-101 (483)
267 3t5s_A Gilaa.00834.A, macropha 22.1 1.2E+02 0.004 24.4 4.9 33 450-482 24-56 (135)
268 1ud2_A Amylase, alpha-amylase; 21.9 44 0.0015 33.3 2.7 26 259-284 78-103 (480)
269 1mxg_A Alpha amylase; hyperthe 21.6 46 0.0016 32.8 2.7 26 259-284 84-109 (435)
270 1d3c_A Cyclodextrin glycosyltr 21.4 54 0.0018 34.5 3.4 26 259-284 113-138 (686)
271 1m53_A Isomaltulose synthase; 21.3 53 0.0018 33.6 3.3 26 259-284 90-115 (570)
272 1cyg_A Cyclodextrin glucanotra 21.2 55 0.0019 34.4 3.4 26 259-284 109-134 (680)
273 1zja_A Trehalulose synthase; s 21.2 56 0.0019 33.4 3.4 26 259-284 77-102 (557)
274 2wc7_A Alpha amylase, catalyti 21.1 46 0.0016 33.2 2.7 26 259-284 100-125 (488)
275 1ht6_A AMY1, alpha-amylase iso 20.9 47 0.0016 32.3 2.6 27 259-285 66-92 (405)
276 1qho_A Alpha-amylase; glycosid 20.9 56 0.0019 34.4 3.4 26 259-284 105-130 (686)
277 2aaa_A Alpha-amylase; glycosid 20.8 55 0.0019 32.6 3.2 27 259-285 95-121 (484)
278 1hvx_A Alpha-amylase; hydrolas 20.8 48 0.0016 33.5 2.7 26 259-284 79-104 (515)
279 3ry0_A Putative tautomerase; o 20.5 1.7E+02 0.0058 19.6 4.9 30 451-480 3-32 (65)
280 2jlj_A YSCU, YOP proteins tran 20.4 1E+02 0.0035 25.2 4.1 38 247-284 48-102 (144)
281 1uok_A Oligo-1,6-glucosidase; 20.1 48 0.0016 33.9 2.6 26 259-284 76-101 (558)
No 1
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=100.00 E-value=8.4e-48 Score=394.46 Aligned_cols=369 Identities=28% Similarity=0.484 Sum_probs=322.2
Q ss_pred CCccc-cCCCCeEEECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC
Q 011567 93 PPVLE-SAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD 171 (483)
Q Consensus 93 ~~~i~-~~~g~~~~~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~ 171 (483)
+.+++ +++|.+++.||+++|||++++|+|+..+|++.+++.+++++++.++++++..+|..+.+.++++.|++++|.++
T Consensus 47 ~~~~~~~~~g~~~~~~g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~~~ 126 (427)
T 2w8t_A 47 AIVMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTG 126 (427)
T ss_dssp CCCCSEEEETTEEEETTEEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTCSE
T ss_pred eeeccccCCCceEeeCCceEEEEECcccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCCCc
Confidence 45678 99999999999999999999999976899999999999999888888888888888999999999999999999
Q ss_pred EEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567 172 SILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVV 251 (483)
Q Consensus 172 ~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~ 251 (483)
++++++|++|+..++++++++||.|+++.++|.++..+++..|.+++.++++|+++|++.+++... .++++|++
T Consensus 127 ~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~~d~~~le~~l~~~~~------~~~~~v~~ 200 (427)
T 2w8t_A 127 AIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPK------EPAKLVVL 200 (427)
T ss_dssp EEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECTTCHHHHHHHHHTSCS------SSCEEEEE
T ss_pred eEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCCCCHHHHHHHHHhccC------CCCeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999976422 13789999
Q ss_pred ecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHH
Q 011567 252 EAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARV 331 (483)
Q Consensus 252 e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~ 331 (483)
+++++++|.+.|+++|+++|++||+++|+||+|+.|+++++|+++.+++++. .++|++++|++|++|..|||+++++++
T Consensus 201 ~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~-~~~di~~~s~sK~~g~~gG~v~~~~~l 279 (427)
T 2w8t_A 201 EGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVGGFVVSNHPK 279 (427)
T ss_dssp ESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCT-TCCSEEEEESSSTTCSCCEEEEECCTT
T ss_pred cCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCC-cCCcEEEecchhhhccCCCEEEeCHHH
Confidence 9999999999999999999999999999999999999998889988888886 467999999999999889999999999
Q ss_pred HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCC-CCCEEEEEecCCCC
Q 011567 332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP-ESPIVFLILEKSTG 410 (483)
Q Consensus 332 ~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~-~~~i~~l~l~~~~~ 410 (483)
++.++.....+.|+++.+|..++++.++++.+++.++++++++++.+++++.|+++ |+++..++ .++++++.+.+
T Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~--- 355 (427)
T 2w8t_A 280 FEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLGTETCDSAIVAVMLED--- 355 (427)
T ss_dssp GGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCSSEEEEEESS---
T ss_pred HHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCcccCCCCCCCEEEEEECC---
Confidence 98887665567777788999999999999988765779999999999999999987 88876344 67898888842
Q ss_pred CchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567 411 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 411 ~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~ 480 (483)
.....++++.++++ ||++.+..++.++.. ...+|++++..+|++|+++++++|+++++++..
T Consensus 356 -----~~~~~~l~~~L~~~-Gi~v~~~~~~~~~~~--~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~~ 417 (427)
T 2w8t_A 356 -----QEQAAMMWQALLDG-GLYVNMARPPATPAG--TFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV 417 (427)
T ss_dssp -----HHHHHHHHHHHHHT-TEECEEECTTTSCTT--CEEEEEECCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred -----HHHHHHHHHHHHHC-CeEEeeeCCCCCCCC--CeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 22345677776654 999998776554221 235999999999999999999999999887643
No 2
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=4.9e-44 Score=362.39 Aligned_cols=369 Identities=30% Similarity=0.550 Sum_probs=318.6
Q ss_pred CCCccccCCCCeEEECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC
Q 011567 92 EPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD 171 (483)
Q Consensus 92 ~~~~i~~~~g~~~~~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~ 171 (483)
.++++++++|.+++.+|++||||++++++|+..+|++.+++.+++++++.++++++..+|+.+...++++++++++|.++
T Consensus 26 ~~~~~~~~~g~~v~~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~ 105 (399)
T 3tqx_A 26 SERIITSPQNAEIKVGEKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTDD 105 (399)
T ss_dssp CCCCBCSCSSSEEEETTEEEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCSE
T ss_pred ccccccCCCCceEeeCCeeEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCCCc
Confidence 36778999999999999999999999999966889999999999999988888888888999999999999999999999
Q ss_pred EEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567 172 SILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVV 251 (483)
Q Consensus 172 ~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~ 251 (483)
.+++++|++|+..+++++.++||.|+++.++|.++..+++..+.+++.++++|+++|++.+++.... ..++++|++
T Consensus 106 ~i~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~----~~~~~~v~~ 181 (399)
T 3tqx_A 106 TILYSSCFDANGGLFETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKNNAMGDLEAKLKEADEK----GARFKLIAT 181 (399)
T ss_dssp EEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECTTCTTHHHHHHHHHHTT----TCSSEEEEE
T ss_pred EEEECchHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCCCCHHHHHHHHHhhhcc----CCCceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999875431 113789999
Q ss_pred ecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeeccHH
Q 011567 252 EAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSAR 330 (483)
Q Consensus 252 e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~~~ 330 (483)
+++++++|.+.|+++|+++|++||+++|+||+|+.|.++.+|.+..+.+++. .++|++++|++|+++ +.|||++++++
T Consensus 182 ~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~di~~~s~sK~~~g~~gG~~~~~~~ 260 (399)
T 3tqx_A 182 DGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVA-DRVDILTGTLGKALGGASGGYTSGHKE 260 (399)
T ss_dssp ESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCT-TCCSEEEEESSSSSCSSCCEEEEECHH
T ss_pred eCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCC-CCCcEEEecchHhcccCceEEEEcCHH
Confidence 9999999999999999999999999999999998887888777777777763 345899999999998 88999999999
Q ss_pred HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCC
Q 011567 331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVL-EENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKST 409 (483)
Q Consensus 331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l-~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~ 409 (483)
+++.++.....+.++++.++..++++.++++.+ +..++.+++++++.+++.+.|+++ |+++. .+.++++++.++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~-- 336 (399)
T 3tqx_A 261 IIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKL-GFQLV-PGNHPIIPVMLGD-- 336 (399)
T ss_dssp HHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCSSSEEEEEEEC--
T ss_pred HHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCEEEEEeCC--
Confidence 999988776677777788999999999999988 444678999999999999999887 77776 4578888888742
Q ss_pred CCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 410 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 410 ~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
.....++++.+++ +||.+.+..++..+.. +..+|++++..+|++|+++++++|+++++++
T Consensus 337 ------~~~~~~~~~~l~~-~gi~v~~~~~~~~~~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 337 ------AQLATNMADHLLQ-EGIYVVGFSYPVVPMG--KARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp ------HHHHHHHHHHHHH-TTEECCEECTTTSCTT--CEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHHH-CCCEEeeeCCCCCCCC--CceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence 1234567777665 5999987665432111 2359999999999999999999999998764
No 3
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=100.00 E-value=1.3e-44 Score=368.58 Aligned_cols=357 Identities=24% Similarity=0.319 Sum_probs=310.3
Q ss_pred ccCCCCeEE-ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEe
Q 011567 97 ESAAGPHTI-ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILY 175 (483)
Q Consensus 97 ~~~~g~~~~-~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~ 175 (483)
.++.+.+++ .+|++||||++++|+|+..+|++.+++.+++++|+.+..+++..+|+.+...++++++++++|.+.++++
T Consensus 46 ~~~~~~~~~~~~g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~ 125 (409)
T 3kki_A 46 KNGKHLVLGKQASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLS 125 (409)
T ss_dssp TTSSCTTCCCCCCTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEEEE
T ss_pred cCCCeeeeCCCCCCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEEEe
Confidence 344555555 5899999999999999988999999999999999988888888899888899999999999999999999
Q ss_pred cccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEeccc
Q 011567 176 SYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVY 255 (483)
Q Consensus 176 ~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~ 255 (483)
++|++++..++++++++||.|+++.++|.++..++...+.+++.++++|+++|++.+++. ++++|++++++
T Consensus 126 ~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~le~~l~~~---------~~~~vi~~~~~ 196 (409)
T 3kki_A 126 QSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQRH---------GPGIIVVDSIY 196 (409)
T ss_dssp SCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECTTCHHHHHHHHHHH---------CSCEEEEESBC
T ss_pred cchHHHHHHHHHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecCCCHHHHHHHHHhc---------CCeEEEECCCC
Confidence 999999999999999999999999999999999999999999999999999999998763 25799999999
Q ss_pred CCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHHHHHH
Q 011567 256 QNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQ 335 (483)
Q Consensus 256 ~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~~ 335 (483)
+++|.+.|+++|+++|++||++||+||+|+.|.+|++|.++.+.+++. .++|++++|++|++++.|||+++++++++.+
T Consensus 197 nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~-~~~di~~~s~sK~~~~~gg~v~~~~~~~~~~ 275 (409)
T 3kki_A 197 STLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLT-REVHFMTASLAKTFAYRAGAIWCNNEVNRCV 275 (409)
T ss_dssp TTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCG-GGCSEEEEESSSTTCSSCEEEEESSSGGGTH
T ss_pred CCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCC-CCCCEEEeecchhhCCCceEEEECHHHHHHH
Confidence 999999999999999999999999999999999999888887777774 4679999999999998899999999998888
Q ss_pred HhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh
Q 011567 336 RLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND 415 (483)
Q Consensus 336 ~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~ 415 (483)
+....++.|+++.++..++++.++++.+++.++++++++++.+++.+.|+++ ++++. +.++++++.+..
T Consensus 276 ~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~-------- 344 (409)
T 3kki_A 276 PFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL-GLTIR--SESQIIGLETGD-------- 344 (409)
T ss_dssp HHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-TCCCC--CSSSEEEEEEES--------
T ss_pred HHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCccC--CCCCEEEEEeCC--------
Confidence 7766677788888999999999999998776778999999999999999987 77765 478889888842
Q ss_pred HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 416 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
.....++++.++++ ||++.+..++..+.. +..+|++++..+|++|+++++++|+++++.
T Consensus 345 ~~~~~~~~~~L~~~-Gv~v~~~~~~~~~~~--~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 345 ERNTEKVRDYLESN-GVFGSVFCRPATSKN--KNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp HHHHHHHHHHHHHT-TEECEEECTTSSCTT--CEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CceEeeeCCCCcCCC--CcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 12344677776655 999988765433211 245999999999999999999999998865
No 4
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=100.00 E-value=1.9e-42 Score=351.43 Aligned_cols=370 Identities=29% Similarity=0.479 Sum_probs=308.4
Q ss_pred cCCCccccCCCCeEE-ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC
Q 011567 91 CEPPVLESAAGPHTI-ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT 169 (483)
Q Consensus 91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~ 169 (483)
..|.++++++|.+++ .+|++||||++++++|+..+|++.+++.+++++|+.++++++..+|+.+...+++++|++++|.
T Consensus 26 ~~~~~~~~~~g~~~~~~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~ 105 (401)
T 1fc4_A 26 KEERIITSAQQADITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGM 105 (401)
T ss_dssp CCCCCBCSCSSSEEEBTTSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTC
T ss_pred eeeeeeccCCCceEEeeCCccEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCC
Confidence 346788999999999 4999999999999999767899999999999998876665555556678889999999999999
Q ss_pred CCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEE
Q 011567 170 PDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYI 249 (483)
Q Consensus 170 e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~i 249 (483)
++.+++++|++++..++++++++||.|+++.++|.++..+++..|.+++.++++|+++|++.+++...+ ..++++|
T Consensus 106 ~~~i~~~sGs~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~----~~~~~~v 181 (401)
T 1fc4_A 106 EDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREA----GARHVLI 181 (401)
T ss_dssp SEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTTCHHHHHHHHHHHHHT----TCSSEEE
T ss_pred CcEEEeCChHHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECCCCHHHHHHHHHHhhcc----CCCceEE
Confidence 888999999999999999999999999999999999999999999999999999999999998764321 0126789
Q ss_pred EEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCCceeecc
Q 011567 250 VVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGS 328 (483)
Q Consensus 250 v~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~GG~i~~~ 328 (483)
+++++++++|.+.|+++|+++|++||+++|+||+|+.|..+++|+++.+++++.+ ++|++++|++|++ |+.|||++++
T Consensus 182 ~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~~di~~~s~sK~~~~~~gG~~~~~ 260 (401)
T 1fc4_A 182 ATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMG-RVDIITGTLGKALGGASGGYTAAR 260 (401)
T ss_dssp EEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTT-CCSEEEEESSSTTCSSSCEEEEEC
T ss_pred EEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCc-CCcEEEecchhhccCCCCEEEEcC
Confidence 9999999999999999999999999999999999986666666776666677764 6799999999999 7779999999
Q ss_pred HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCC
Q 011567 329 ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS 408 (483)
Q Consensus 329 ~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~ 408 (483)
+++++.++.....+.++.+.++..++++.++++.+++.++.+++++++.+++.+.|+++ ++++. ++.++++++.+++
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~- 337 (401)
T 1fc4_A 261 KEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA-GFTLA-GADHAIIPVMLGD- 337 (401)
T ss_dssp HHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCCBC-CSSSSEEEEEEEC-
T ss_pred HHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCCCEEEEEcCC-
Confidence 99999887655455556677899999999999988765678999999999999999987 77776 4578888888742
Q ss_pred CCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 409 ~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
.....++.+.+++ +||.+.+...+..+.. ...+|++++..+|++|+++++++|+++++++
T Consensus 338 -------~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~--~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 338 -------AVVAQKFARELQK-EGIYVTGFFYPVVPKG--QARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp -------HHHHHHHHHHHHH-TTEECCEECTTSSCTT--CEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred -------hHHHHHHHHHHHH-CCcEEeeecCCCCCCC--CceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1224467776555 5999988765433111 2349999999999999999999999998764
No 5
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=100.00 E-value=2.2e-43 Score=359.64 Aligned_cols=372 Identities=15% Similarity=0.155 Sum_probs=279.4
Q ss_pred HHHHHHhhcCCCCCCcccccccccCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCC
Q 011567 68 EIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGS 143 (483)
Q Consensus 68 e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~ 143 (483)
+.-+.-.++.|-..-.++.. -.+.|.++++++|+|+| +|||+||||.++ +.+|| +||+|.+|+.+++++...
T Consensus 46 ~~~~~a~~~~pgg~~~~~~~-~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH-~hp~v~~Av~~q~~~~~~-- 121 (454)
T 4ao9_A 46 RQFEAQARYMPGANSRSVLF-YAPFPLTIARGEGAALWDADGHRYADFIAEYTAGVYGH-SAPEIRDAVIEAMQGGIN-- 121 (454)
T ss_dssp HHHHHHTTTSGGGCSSGGGC-CSSCCCEEEEEETTEEEETTCCEEEESSGGGGTTTTCS-CCHHHHHHHHHHHHTCSC--
T ss_pred HHHHHHhhhCCCCCCCCccc-cCCCCccEEEeecCEEEECCCCEEEEccccHHhhcccC-CCHHHHHHHHHHHhcCCC--
Confidence 34444455555433222111 12358889999999999 899999999986 78999 899999999999987422
Q ss_pred CCCCCcccChHHHHHHHHHHHhhhCC-CCEEEecccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhhhc-----C
Q 011567 144 CGPRGFYGTIDVHLDCEARIAKFLGT-PDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYLS-----R 214 (483)
Q Consensus 144 ~~~~~~~g~~~~~~~l~~~La~~~g~-e~~i~~~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~~s-----~ 214 (483)
+.+....+.+++++|+++++. +.+.+++||++|+++|++. +++|.++|.++..||+.+....... .
T Consensus 122 -----~~~~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~ 196 (454)
T 4ao9_A 122 -----LTGHNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVP 196 (454)
T ss_dssp -----CCSEESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCC
T ss_pred -----ccCCcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCC
Confidence 222345678999999999864 5566669999999999754 6789999999999998765443332 2
Q ss_pred CeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCcccccccc
Q 011567 215 STVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLG 290 (483)
Q Consensus 215 ~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg 290 (483)
.....+++||.+.+++.+++...+ +++|++||+++++|.+.| |++|+++|++||++||+||+++ |++|
T Consensus 197 ~~~~~~p~nd~~~l~~~l~~~~~~-------iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G 268 (454)
T 4ao9_A 197 FDFLVLPYNDAQTARAQIERHGPE-------IAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT-SRLA 268 (454)
T ss_dssp SEEEEECTTCHHHHHHHHHHTGGG-------EEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG-GGGS
T ss_pred CCcccCCCchHHHHHHHHhhcCCc-------eEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc-CCCc
Confidence 356678999999999999886654 899999999999999988 9999999999999999999998 4555
Q ss_pred CCCCccccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceee--cCCCcHHHHHHHHHHHHHHhcC
Q 011567 291 RSGRGLTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVF--SASLPPYLASAAITAIDVLEEN 366 (483)
Q Consensus 291 ~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~f--s~~~~p~~~aaa~~al~~l~~~ 366 (483)
. .|..+++|+.| ||+ +++|++|. +.|.+++++++++.+......+.+ +.+.||++|++++++|+.+++
T Consensus 269 ~--~~a~e~~gv~P---Di~--t~gK~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~- 340 (454)
T 4ao9_A 269 P--HGLANKLGIRS---DLT--TLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT- 340 (454)
T ss_dssp T--TCHHHHHTCCC---SEE--EEEGGGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC-
T ss_pred c--ccchhccCCCC---cEE--EeccccCCCCcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc-
Confidence 3 34468999998 888 79999972 235577899999988654322222 224699999999999999975
Q ss_pred cHHHHHHHHHHHHHHHhhccCC---CceeecCCCCCEEEEEecCCCC-C----chhhHHHHHHHHHHHHHhCCEEEEeec
Q 011567 367 PDLITKLKKNTAILRTGLSDIH---GLSIASNPESPIVFLILEKSTG-S----MKNDLQLLEDIADWALKEDGVFVVTSK 438 (483)
Q Consensus 367 ~~~~~~l~~~~~~l~~~L~~~~---~~~i~~~~~~~i~~l~l~~~~~-~----~~~~~~~~~~i~~~~l~~~Gv~v~~~~ 438 (483)
+++.+++.+++++|+++|+++. ++.......+.++.+.+..... . ...+......+...+++ +||++.+.
T Consensus 341 ~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~Gv~~~p~- 418 (454)
T 4ao9_A 341 PEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLN-EDIYSSPR- 418 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHH-TTEECCTT-
T ss_pred cChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHH-CCEEEcCC-
Confidence 5689999999999999997641 2222223357788887743211 1 11234455667777776 49998643
Q ss_pred ccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 439 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 439 ~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
-++.++..||++|||++++++++++.+.
T Consensus 419 ------------~~~~~s~~~T~~dId~~l~al~~~l~~~ 446 (454)
T 4ao9_A 419 ------------GFVVLSLPLTDADIDRYVAAIGSFIGGH 446 (454)
T ss_dssp ------------CEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred ------------CCEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 2456777899999999999999999764
No 6
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=100.00 E-value=3.1e-42 Score=347.77 Aligned_cols=360 Identities=25% Similarity=0.369 Sum_probs=300.8
Q ss_pred CCCccccCCCCeEEECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC
Q 011567 92 EPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD 171 (483)
Q Consensus 92 ~~~~i~~~~g~~~~~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~ 171 (483)
.|.++++++|.+++.+|++||||+++.++|+..+|++.+++.+++++++.+.+.++..+|..+...++++.|++++|.++
T Consensus 22 ~~~~~~~~~g~~~~~~g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~ 101 (384)
T 1bs0_A 22 RRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSR 101 (384)
T ss_dssp CCCCCSBCSSSEEEETTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSE
T ss_pred ccccccCCCCceEEECCceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCc
Confidence 46778999999999999999999999778865789999999999998877666666666777889999999999999998
Q ss_pred EEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567 172 SILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVV 251 (483)
Q Consensus 172 ~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~ 251 (483)
.+++++|++++..++++++++||.|+++.++|.++..+++..|.+++.++++|+++|++.+++... .+++|++
T Consensus 102 ~i~~~sGt~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~-------~~~~v~~ 174 (384)
T 1bs0_A 102 ALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCP-------GQQMVVT 174 (384)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECTTCHHHHHHHHHSCCS-------SCEEEEE
T ss_pred EEEeCCcHHHHHHHHHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhcCC-------CCeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999998865321 2689999
Q ss_pred ecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHH
Q 011567 252 EAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARV 331 (483)
Q Consensus 252 e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~ 331 (483)
+++++++|.+.|+++|+++|++||+++|+||+|+.|.++++|.++.+.++.. +|++++|++|++|+.|||+++++++
T Consensus 175 ~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~---~di~~~s~sK~~~~~GG~~~~~~~~ 251 (384)
T 1bs0_A 175 EGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVK---PELLVVTFGKGFGVSGAAVLCSSTV 251 (384)
T ss_dssp ESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCC---CSEEEEESSSTTSSCCEEEEECHHH
T ss_pred eCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCC---CcEEEeeccchhhccCcEEEeCHHH
Confidence 9999999999999999999999999999999999887776666655556543 4899999999999889999999999
Q ss_pred HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCC
Q 011567 332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKST 409 (483)
Q Consensus 332 ~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~ 409 (483)
++.++.....+.++++.+++.++++.++++.++ ..++.+++++++.+++.+.|+++ ++++.. +.++++++.++.
T Consensus 252 ~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~-- 327 (384)
T 1bs0_A 252 ADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFTLAD-SCSAIQPLIVGD-- 327 (384)
T ss_dssp HHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEECS-CCSSBCCEEEES--
T ss_pred HHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-CCcccC-CCCCEEEEEeCC--
Confidence 988876554566666778999999999998886 33568899999999999999987 787763 467777777731
Q ss_pred CCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567 410 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 474 (483)
Q Consensus 410 ~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~ 474 (483)
.....++.+.+++ +||.+.+...+..+.. ...+|++++..+|++|+++++++|+++
T Consensus 328 ------~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~--~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 328 ------NSRALQLAEKLRQ-QGCWVTAIRPPTVPAG--TARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp ------HHHHHHHHHHHHH-TTEECCEECTTSSCTT--CEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHH-CCcEEEeecCCCCCCC--CceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 1224467776655 5999988765432111 245999999989999999999999864
No 7
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=100.00 E-value=4.1e-42 Score=351.84 Aligned_cols=378 Identities=18% Similarity=0.249 Sum_probs=284.1
Q ss_pred HHHHHHHhhcCCCCCCcccccccccCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCC
Q 011567 67 KEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVG 142 (483)
Q Consensus 67 ~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g 142 (483)
+++-+..++..|.... +..|.++++++|.|+| +|||+||||.++ +.+|| +||+|.+|+.+|++++...
T Consensus 28 ~~l~~r~~~~~~~~~~-------~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~~~ 99 (456)
T 4atq_A 28 QALAERRSAVVAAGVA-------SGVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGA-SDPAVVAAVQEAAAHFTHT 99 (456)
T ss_dssp HHHHHHHHHHBCTTCC-------CSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCT-TCHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHhCCCCCC-------CCCCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCC-CCHHHHHHHHHHHhhccCc
Confidence 4555555556554432 3457889999999999 899999999986 78999 8999999999999986432
Q ss_pred CCCCCCcccChHHHHHHHHHHHhhhCC---CCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcCC-
Q 011567 143 SCGPRGFYGTIDVHLDCEARIAKFLGT---PDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRS- 215 (483)
Q Consensus 143 ~~~~~~~~g~~~~~~~l~~~La~~~g~---e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~~- 215 (483)
+ .++.+.+...+|.++|+++++. +.+++++||++|++.|++ .+++|..+|.++..||+.+..++.+++.
T Consensus 100 ~----~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~ 175 (456)
T 4atq_A 100 C----FMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKA 175 (456)
T ss_dssp T----TTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCC
T ss_pred c----cCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCc
Confidence 1 1233457788999999999864 356677999999999975 5678999999999999988766665432
Q ss_pred ------------eEEEecCC-----------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHH
Q 011567 216 ------------TVVYFKHN-----------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELI 268 (483)
Q Consensus 216 ------------~v~~~~~~-----------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~ 268 (483)
.+..++.+ +.+.+++.++..... ..+.++++|++||+++++|.+.| |++|+
T Consensus 176 ~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~--~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr 253 (456)
T 4atq_A 176 MPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQ--IGGDQVAAIIIEPIQGEGGFIVPAEGFLPALS 253 (456)
T ss_dssp TTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHH--TCGGGEEEEEECSSBTTTTCBCCCTTHHHHHH
T ss_pred cccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHh--hcCCceEEEEeccccCCCCccccchhhhHHHH
Confidence 23333322 344444444433211 12235899999999999998876 99999
Q ss_pred HHHHHcCcEEEEeCccccccccCCCCcc-ccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeec
Q 011567 269 RLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFS 345 (483)
Q Consensus 269 ~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs 345 (483)
++|++||++||+||++++ +|++|.++ .+++|+.| ||+ +++|++|. +-|.+++++++++.+....++.+|+
T Consensus 254 ~lc~~~gillI~DEV~tG--~GRtG~~~a~e~~gv~P---Div--t~gK~lggg~P~~av~~~~~i~~~~~~~~~~~Tf~ 326 (456)
T 4atq_A 254 EWAKEKGIVFIADEVQSG--FCRTGEWFAVDHEGVVP---DII--TMAKGIAGGLPLSAITGRADLLDAVHPGGLGGTYG 326 (456)
T ss_dssp HHHHHHTCEEEEECTTTT--TTTTSSSSGGGGTTCCC---SEE--EECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSS
T ss_pred HHHhhcCCceEecccccc--cCCccccccccccCCCC---chh--hhhhcccCcCCceeeEecHHHHhcccccCCCCCCC
Confidence 999999999999999986 46667655 58999998 898 79999971 1245778999999887776676776
Q ss_pred CCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCC------Cceeec--CCCCCEEEEEecCCCCCchhhHH
Q 011567 346 ASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIH------GLSIAS--NPESPIVFLILEKSTGSMKNDLQ 417 (483)
Q Consensus 346 ~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~------~~~i~~--~~~~~i~~l~l~~~~~~~~~~~~ 417 (483)
+ ||+.|++++++|+++++++ +.+++++..++++++|+++. ..++.+ ...+.++.+.+..+. ....+..
T Consensus 327 g--npla~aaala~L~~i~~~~-l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~-~~~~~~~ 402 (456)
T 4atq_A 327 G--NPVACAAALAAIDTMEQHD-LNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPG-SKEPNAE 402 (456)
T ss_dssp S--CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTT-SCCBCHH
T ss_pred C--ChHHHHhhHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCC-CCCcCHH
Confidence 5 8999999999999998754 88999999999998887641 112221 235778888886543 2233455
Q ss_pred HHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 418 LLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 418 ~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
...++...|+++ |+++.+.... ...|||+|++.+|++|||+++++|++++++
T Consensus 403 ~~~~v~~~~~~~-Gvl~~~~g~~-------~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 403 LTKAVAAACLKE-GVIILTCGTY-------GNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp HHHHHHHHHHHT-TEECEEECTT-------SCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCEEEecCCC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 677888887765 9998764321 134999999999999999999999999875
No 8
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=3.8e-41 Score=341.53 Aligned_cols=368 Identities=29% Similarity=0.524 Sum_probs=305.8
Q ss_pred cCCCccccCCCCeEEECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC
Q 011567 91 CEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP 170 (483)
Q Consensus 91 ~~~~~i~~~~g~~~~~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e 170 (483)
..|.++++++|.+++.+|++++||++++++|+..+|.+.+++.+++++++.+.++++...|..+...++++.+++++|.+
T Consensus 25 ~~~~~~~~~~g~~~~~~g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~ 104 (398)
T 3a2b_A 25 AYFRPIQSKQDTEVKIDGRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKE 104 (398)
T ss_dssp CSSCCBCSCSSSEEEETTEEEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCS
T ss_pred cceeeecCCCCceEEECCceEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCC
Confidence 35678999999999999999999999988888778999999999998876655555556677889999999999999998
Q ss_pred CEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567 171 DSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIV 250 (483)
Q Consensus 171 ~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv 250 (483)
+.+++++|++|+..+++++.++||.|+++.++|.++...++..|.+++.++..|+++|++.+++..+ .++++|+
T Consensus 105 ~v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~l~~~~~------~~~~~v~ 178 (398)
T 3a2b_A 105 AAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGHNNMEDLRAKLSRLPE------DSAKLIC 178 (398)
T ss_dssp EEEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECTTCHHHHHHHHHTSCS------SSCEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCCCCHHHHHHHHHhhcc------CCceEEE
Confidence 8888899999999999999999999999999999999999999999999999999999998875321 1368899
Q ss_pred EecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHH
Q 011567 251 VEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSAR 330 (483)
Q Consensus 251 ~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~ 330 (483)
++++++++|.+.|+++|+++|++||+++|+||+|+.|.+++++..+.+.+++. +.+|++++|++|++|+.|||++++++
T Consensus 179 ~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~di~~~s~sK~~~~~GG~~~~~~~ 257 (398)
T 3a2b_A 179 TDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLN-DDVDLIMGTFSKSLASLGGFVAGDAD 257 (398)
T ss_dssp EESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCG-GGCSEEEEESSSTTCSSCEEEEECHH
T ss_pred EeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCC-cCCeEEEecccccccCCCcEEEeCHH
Confidence 99999999999999999999999999999999999887776666665556653 34599999999999988899999999
Q ss_pred HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCC
Q 011567 331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTG 410 (483)
Q Consensus 331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~ 410 (483)
+++.++.....+.++.+.++..++++.++++.++...+.+++++++.+++.+.|+++ |+++.. +.++++++.++.
T Consensus 258 ~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~g~~~~~~~~~--- 332 (398)
T 3a2b_A 258 VIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDH-GFDLGA-TESPILPIFIRS--- 332 (398)
T ss_dssp HHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHT-TCCBCS-CCSSEEEEECCC---
T ss_pred HHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhc-CCCcCC-CCCCEEEEEcCC---
Confidence 998887644345555667788887777888877655678999999999999999987 887764 457888888732
Q ss_pred CchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 411 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 411 ~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
.....++.+.++++ ||.+.+...+..+. .+..+|++++..+|++|+++++++|+++++++
T Consensus 333 -----~~~~~~l~~~l~~~-gi~v~~~~~~~~~~--~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 333 -----NEKTFWVTKMLQDD-GVFVNPVVSPAVPA--EESLIRFSLMATHTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp -----HHHHHHHHHHHHHT-TEECEEECTTTSCG--GGCEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHHC-CcEEEeeCCCCCCC--CCceEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 12244677776665 99999876543211 02449999998899999999999999998764
No 9
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=100.00 E-value=9.6e-42 Score=350.39 Aligned_cols=361 Identities=16% Similarity=0.182 Sum_probs=273.3
Q ss_pred ccCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHh
Q 011567 90 RCEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAK 165 (483)
Q Consensus 90 ~~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~ 165 (483)
...|.+|++++|.|+| +|||+||||.++ +.+|| +||+|.+|+.+|+++....+ ..+..+++...+|+++|++
T Consensus 47 ~~~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~l~~~~---~~~~~~~~~~~~lAe~L~~ 122 (473)
T 4e3q_A 47 QRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGF-DHKGLIDAAKAQYERFPGYH---AFFGRMSDQTVMLSEKLVE 122 (473)
T ss_dssp HHCCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCS-CCHHHHHHHHHHHHHCCCCC---CCTTEEEHHHHHHHHHHHH
T ss_pred cCCCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccC-CCHHHHHHHHHHHHhccccc---ccccccCHHHHHHHHHHHh
Confidence 4458889999999999 899999999987 78999 89999999999999854211 1122246788899999999
Q ss_pred hhC--CCCEEEecccHHHHHhhhhhh---------ccCCcEEEEcCCchhHHHhHhhhcCCe-----------EEEecCC
Q 011567 166 FLG--TPDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHWGIQNGLYLSRST-----------VVYFKHN 223 (483)
Q Consensus 166 ~~g--~e~~i~~~sG~~a~~~ai~~~---------~~~gdiI~~~~~~h~s~~~g~~~s~~~-----------v~~~~~~ 223 (483)
.++ .+.+++.+||++|++.|++.. +++..+|.+...||+.+..++.+++.. ...++..
T Consensus 123 ~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p 202 (473)
T 4e3q_A 123 VSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCP 202 (473)
T ss_dssp HSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCC
T ss_pred hCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCC
Confidence 986 456777799999999998753 345678999999999887777666531 1222211
Q ss_pred ------C------------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEe
Q 011567 224 ------D------------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLD 281 (483)
Q Consensus 224 ------d------------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~D 281 (483)
+ .+++++.+.+... ..+++|++||+++++|.+.| |++|+++|++||++||+|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~------~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~D 276 (473)
T 4e3q_A 203 HYWRYGEEGETEEQFVARLARELEETIQREGA------DTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISD 276 (473)
T ss_dssp CHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCG------GGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEE
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHhhCC------CceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEecc
Confidence 1 2344444444322 35899999999999998877 999999999999999999
Q ss_pred CccccccccCCCCccc-cccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHh-------cCCceeecCCCcH
Q 011567 282 ESNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRL-------SSSGYVFSASLPP 350 (483)
Q Consensus 282 Ea~s~g~lg~~G~g~~-~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~-------~~~~~~fs~~~~p 350 (483)
|++++ +|+||.++. +++|+.| ||+ +++|+++. +-|.+++++++++.+.. ..++++|+ .||
T Consensus 277 EV~tG--fGRtG~~fa~e~~gv~P---Di~--t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~--Gnp 347 (473)
T 4e3q_A 277 EVICG--FGRTGNTWGCVTYDFTP---DAI--ISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTAS--GHP 347 (473)
T ss_dssp CTTTS--SSTTSSSCHHHHTTCCC---SEE--EECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTT--TCH
T ss_pred Ccccc--CCcccchhHHHhcCCCC---ChH--HhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCC--CCc
Confidence 99986 577777664 8999998 898 79999972 12446789999887643 23455554 589
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee--cCCCCCEEEEEecCCCCC---chhhHHHHHHHHHH
Q 011567 351 YLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA--SNPESPIVFLILEKSTGS---MKNDLQLLEDIADW 425 (483)
Q Consensus 351 ~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~--~~~~~~i~~l~l~~~~~~---~~~~~~~~~~i~~~ 425 (483)
++|++++++|+++++++ +.++++++.++|+++|+++...+.+ ....+.++.+.+..+... .+.+.....++...
T Consensus 348 la~Aaala~L~~i~~~~-l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~ 426 (473)
T 4e3q_A 348 VGCAIALKAIDVVMNEG-LAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANT 426 (473)
T ss_dssp HHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHH
T ss_pred chhhhhhhhhhhhcccc-HHHHHHHHHHHHHHHHHHHhcCCCeeEEeecceEEEEEEecCccccccccccHHHHHHHHHH
Confidence 99999999999998764 8999999999999999775322111 123567888877433221 12233445677887
Q ss_pred HHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567 426 ALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD 481 (483)
Q Consensus 426 ~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~ 481 (483)
+++ +|+++.+.. ..||++|++.+|++|+|++++++++++++++.+
T Consensus 427 ~~~-~Gll~~~~g----------~~i~l~PPL~it~~eid~~~~~l~~al~~v~ae 471 (473)
T 4e3q_A 427 CTD-LGLICRPLG----------QSVVLCPPFILTEAQMDEMFDKLEKALDKVFAE 471 (473)
T ss_dssp HHH-TTEECEEET----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-CCcEEEecC----------CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 776 599987653 338999999999999999999999999998754
No 10
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=2e-40 Score=343.98 Aligned_cols=357 Identities=17% Similarity=0.204 Sum_probs=275.0
Q ss_pred CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (483)
Q Consensus 92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~ 167 (483)
.|.++++++|.++| .||++||||+++ +.+|| +||+|++|+.+++++++.++. +.++.+.+.+|+++|++++
T Consensus 36 ~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh-~~p~v~~A~~~~l~~~~~~~~----~~~~~~~~~~la~~l~~~~ 110 (476)
T 3i5t_A 36 AQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGY-GRREIVDAMAHQAMVLPYASP----WYMATSPAARLAEKIATLT 110 (476)
T ss_dssp CCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHHHCCCCCT----TTCBCHHHHHHHHHHHTTS
T ss_pred CCeeEEEeecCEEEECCCCEEEECCCchhhccCCC-CCHHHHHHHHHHHHhccCccc----CccCCHHHHHHHHHHHhcC
Confidence 57889999999999 799999999997 78999 799999999999998655432 1346788999999999999
Q ss_pred C--CCCEEEecccHHHHHhhhhhh---------ccCCcEEEEcCCchhHHHhHhhhcCCe------------EEEe--cC
Q 011567 168 G--TPDSILYSYGLSTMFSAIPCF---------CKKGDLIVADEGVHWGIQNGLYLSRST------------VVYF--KH 222 (483)
Q Consensus 168 g--~e~~i~~~sG~~a~~~ai~~~---------~~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~--~~ 222 (483)
+ .+.+++++||++|+..|++++ +++.++|+.+..||+.+..++.+++.. +..+ ++
T Consensus 111 ~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 190 (476)
T 3i5t_A 111 PGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPN 190 (476)
T ss_dssp STTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCC
T ss_pred CCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCc
Confidence 5 567777899999999999877 556778999999999887777655432 2222 22
Q ss_pred -----CC---------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCcc
Q 011567 223 -----ND---------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESN 284 (483)
Q Consensus 223 -----~d---------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~ 284 (483)
++ +++||+.+++...+ ++++|++||+++++|.+.| |++|+++|++||++||+||+|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~le~~i~~~~~~------~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~ 264 (476)
T 3i5t_A 191 PRHAGNRSQEAFLDDLVQEFEDRIESLGPD------TIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVV 264 (476)
T ss_dssp GGGCTTSCHHHHHHHHHHHHHHHHHHHCGG------GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTT
T ss_pred ccccCCCchHHHHHHHHHHHHHHHHhcCCC------CEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecc
Confidence 21 77888888754322 4899999999999998776 999999999999999999999
Q ss_pred ccccccCCCCcc-cc-ccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhc-------CCceeecCCCcHHH
Q 011567 285 SFGVLGRSGRGL-TE-HCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLS-------SSGYVFSASLPPYL 352 (483)
Q Consensus 285 s~g~lg~~G~g~-~~-~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~-------~~~~~fs~~~~p~~ 352 (483)
++ +|++|..+ .+ ++++.| |++ +++|++|+ +-|++++++++++.+... .+++ +.+.||++
T Consensus 265 ~g--~gr~G~~~~~~~~~~v~p---di~--t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~--t~~~np~a 335 (476)
T 3i5t_A 265 TG--FGRCGEWFASEKVFGVVP---DII--TFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGY--TYSNQPVA 335 (476)
T ss_dssp TT--TTTTSSSCHHHHTTCCCC---SEE--EECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCC--TTTTCHHH
T ss_pred cC--CccccCceeeecccCCCc---chh--hhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccC--CCCcCHHH
Confidence 85 56666543 46 889887 787 78999983 126788999999988653 2233 33568999
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee--cCCCCCEEEEEecCCCCCc---hhhHHHHHHHHHHHH
Q 011567 353 ASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA--SNPESPIVFLILEKSTGSM---KNDLQLLEDIADWAL 427 (483)
Q Consensus 353 ~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~--~~~~~~i~~l~l~~~~~~~---~~~~~~~~~i~~~~l 427 (483)
++++.++|+.++++ ++.++++++.+++++.|+++..++.. ..+.+.++.+.+....... ..+.....++++.++
T Consensus 336 ~aAa~aaL~~~~~~-~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 414 (476)
T 3i5t_A 336 CAAALANIELMERE-GIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCF 414 (476)
T ss_dssp HHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceeEEEEecCccccccccchhHHHHHHHHHHH
Confidence 99999999998764 58999999999999999865332211 1346778888875432111 111224567777776
Q ss_pred HhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567 428 KEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 428 ~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~ 480 (483)
+ +||++.+.. ..|||+|++.+|++|+++++++|+++++++..
T Consensus 415 ~-~Gv~v~~~g----------~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~ 456 (476)
T 3i5t_A 415 E-LGLIVRPLG----------DLCVISPPLIISRAQIDEMVAIMRQAITEVSA 456 (476)
T ss_dssp H-TTEECEEET----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred H-CCCEEEecC----------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6 599998742 23999999999999999999999999988754
No 11
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=100.00 E-value=1.2e-40 Score=338.20 Aligned_cols=352 Identities=25% Similarity=0.411 Sum_probs=290.9
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhh
Q 011567 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAI 186 (483)
Q Consensus 107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai 186 (483)
||++++||.+++++|+..+|++.+++.+++++++.++++++..|+..+...+++++||+++|.++.+++++|++++..++
T Consensus 44 ~g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~ 123 (401)
T 2bwn_A 44 GKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATL 123 (401)
T ss_dssp CEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHH
T ss_pred CCCcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHH
Confidence 68999999999998887789999999999999877666667778888899999999999999999999999999888888
Q ss_pred hhhc--cCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccCh
Q 011567 187 PCFC--KKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPL 264 (483)
Q Consensus 187 ~~~~--~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L 264 (483)
.++. ++||.|+++.++|.++..+++..|.+++.++++|+++|++.+++.... ++++|+++++++++|.+.|+
T Consensus 124 ~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~le~~l~~~~~~------~~~~v~~~~~~nptG~~~~l 197 (401)
T 2bwn_A 124 STLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPA------APKLIAFESVYSMDGDFGPI 197 (401)
T ss_dssp HHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTTCHHHHHHHHHHSCTT------SCEEEEEESBCTTTCCBCCH
T ss_pred HHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhhccC------CceEEEEecCcCCCCCcCCH
Confidence 7764 589999999999999999999999999999999999999998764321 37899999999999999999
Q ss_pred HHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCceeeccHHHHHHHHhcCCceee
Q 011567 265 DELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVF 344 (483)
Q Consensus 265 ~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~~~~~~~~~~~~~f 344 (483)
++|+++|++||+++|+||+|+.|.+|++|.|+...+++. +++|++++|++|++|..|||+++++++++.++....++.|
T Consensus 198 ~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~-~~~~i~~~s~sK~~~~~GG~~~~~~~~~~~l~~~~~~~~~ 276 (401)
T 2bwn_A 198 KEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLM-HRIDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIF 276 (401)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCG-GGCSEEEEESSSTTCSCCEEEEECHHHHHHHHHHCHHHHT
T ss_pred HHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCcc-ccCcEEEeechhhccCCCCEEecCHHHHHHHHHhCcCcee
Confidence 999999999999999999999888888887776556653 3458999999999998899999999998887765555666
Q ss_pred cCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHH
Q 011567 345 SASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDI 422 (483)
Q Consensus 345 s~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i 422 (483)
+++.++..++++.++++.+++. ++++++++++.+++.+.|+++ |+++.. +.++++++.++. .....++
T Consensus 277 ~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~--------~~~~~~~ 346 (401)
T 2bwn_A 277 STSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIID-HGSHIVPVVIGD--------PVHTKAV 346 (401)
T ss_dssp SBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCC-CSSSCEEEECCC--------HHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCcccC-CCCCeEEEEeCC--------hHHHHHH
Confidence 6666788888888999988764 578899999999999999887 877764 356788887732 1224467
Q ss_pred HHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 423 ADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 423 ~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
.+.+++++||.+.+...+..+.. ...+|++++..+|++|+++++++|++++++
T Consensus 347 ~~~L~~~~gi~v~~~~~~~~~~~--~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 347 SDMLLSDYGVYVQPINFPTVPRG--TERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp HHHHHHHHCEECCEECTTTSCTT--CCEEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred HHHHHhcCCEEEeecCCCCCCCC--CceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence 77665456999987765433111 135999999999999999999999988754
No 12
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=100.00 E-value=6.1e-41 Score=347.29 Aligned_cols=359 Identities=14% Similarity=0.142 Sum_probs=274.2
Q ss_pred cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567 91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 166 (483)
Q Consensus 91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~ 166 (483)
..|.++++++|.++| .||++||||+++ ++||| +||+|++|+.+++++++.+++. ..++.+...+|+++|+++
T Consensus 36 ~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh-~~p~v~~A~~~~~~~~~~~~~~---~~~~~~~~~~lae~l~~~ 111 (472)
T 3hmu_A 36 EGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGY-GRDELAEVAARQMRELPYYNTF---FKTTHVPAIALAQKLAEL 111 (472)
T ss_dssp HCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCB-CCHHHHHHHHHHHHHCSCCCSS---SSEECHHHHHHHHHHHHH
T ss_pred CCCeeEEEeecCEEEECCCCEEEECCCchhhccCCC-CCHHHHHHHHHHHHhccccccc---cccCCHHHHHHHHHHHHh
Confidence 357889999999999 799999999997 88999 7999999999999986543322 234567899999999999
Q ss_pred hC--CCCEEEecccHHHHHhhhhhhc---------cCCcEEEEcCCchhHHHhHhhhcCCe-----------EEEec---
Q 011567 167 LG--TPDSILYSYGLSTMFSAIPCFC---------KKGDLIVADEGVHWGIQNGLYLSRST-----------VVYFK--- 221 (483)
Q Consensus 167 ~g--~e~~i~~~sG~~a~~~ai~~~~---------~~gdiI~~~~~~h~s~~~g~~~s~~~-----------v~~~~--- 221 (483)
++ .+++++++||++|++.+++++. ++.++|+.+..||+....++.+++.. +..++
T Consensus 112 ~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~ 191 (472)
T 3hmu_A 112 APGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPN 191 (472)
T ss_dssp SCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCC
T ss_pred CCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCc
Confidence 96 4567777999999999998875 36678889999999887777666532 22222
Q ss_pred ---CCC-----------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCc
Q 011567 222 ---HND-----------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDES 283 (483)
Q Consensus 222 ---~~d-----------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa 283 (483)
++| +++||+.+++...+ ++++|++||+++++|.+.| |++|+++|++||++||+||+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~------~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv 265 (472)
T 3hmu_A 192 WWAEGGDMDPEEFGLARARELEEAILELGEN------RVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEV 265 (472)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHHHHHHHCGG------GEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECT
T ss_pred cccCCcccCHHHHHHHHHHHHHHHHHhcCCC------CEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcc
Confidence 233 67788887654322 4899999999999999887 99999999999999999999
Q ss_pred cccccccCCCC-ccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHH
Q 011567 284 NSFGVLGRSGR-GLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITA 359 (483)
Q Consensus 284 ~s~g~lg~~G~-g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~a 359 (483)
|++ +|++|. +..+++++.| |++ +++|++++.| |++++++++++.+......+.++.+.||++++++.++
T Consensus 266 ~~g--fgr~G~~~a~~~~~v~p---di~--t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aa 338 (472)
T 3hmu_A 266 ICG--FGRTGNWFGTQTMGIRP---HIM--TIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALEN 338 (472)
T ss_dssp TTT--TTTTSSSCHHHHHTCCC---SEE--EECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHH
T ss_pred ccC--CcccCccchhHHhCCCC---cee--eechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCHHHHHHHHHH
Confidence 984 455564 4468889887 787 6899998544 8899999999988322112222335689999999999
Q ss_pred HHHHhcCcHHHHHHH-HHHHHHHHhhccCCC---ceeecCCCCCEEEEEecCCCCCch---hh-HHHHHHHHHHHHHhCC
Q 011567 360 IDVLEENPDLITKLK-KNTAILRTGLSDIHG---LSIASNPESPIVFLILEKSTGSMK---ND-LQLLEDIADWALKEDG 431 (483)
Q Consensus 360 l~~l~~~~~~~~~l~-~~~~~l~~~L~~~~~---~~i~~~~~~~i~~l~l~~~~~~~~---~~-~~~~~~i~~~~l~~~G 431 (483)
|+.+++. ++.++++ ++.+++++.|+++.. +... .+.+.++.+.+........ .+ .....++++.+++ +|
T Consensus 339 L~~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-r~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G 415 (472)
T 3hmu_A 339 LRILEEE-NILDHVRNVAAPYLKEKWEALTDHPLVGEA-KIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFA-NN 415 (472)
T ss_dssp HHHHHHT-THHHHHHHTHHHHHHHHHHGGGGSTTEEEE-EEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHH-TT
T ss_pred HHHHHHh-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EecCceEEEEEecCccccccccchhHHHHHHHHHHHHH-CC
Confidence 9988764 5889999 999999998876532 2222 3467788888753211000 00 2335577777665 59
Q ss_pred EEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567 432 VFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 479 (483)
Q Consensus 432 v~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~ 479 (483)
|++.+.. ..|||+|++.+|++|+++++++|+++++++.
T Consensus 416 v~v~~~g----------~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 416 LIMRHVG----------DRMIISPPLVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp BCCEEET----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEecC----------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9998753 2399999999999999999999999988764
No 13
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=100.00 E-value=2.3e-39 Score=332.81 Aligned_cols=365 Identities=20% Similarity=0.208 Sum_probs=281.7
Q ss_pred CCCHHHHHHHHhhcCCCCCCcccccccccCCCccccCCCCeEE-ECCeeEEEeecC-C--CCCCCCChHHHHHHHHHHHh
Q 011567 63 PLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI-ISGKEVVNFASA-N--YLGLIGHEKLLESCTSALEK 138 (483)
Q Consensus 63 ~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~-~~G~~~id~~s~-~--~lG~~~~p~i~~a~~~~l~~ 138 (483)
.++.+++.++-.++...++. ..|.++++++|.++| .||++||||+++ + .+|| .||++.+|+.+++++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh-~~p~v~~Ai~~~~~~ 107 (439)
T 2oat_A 37 PPTSDDIFEREYKYGAHNYH--------PLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGH-CHPKIVNALKSQVDK 107 (439)
T ss_dssp CCCHHHHHHHHHHHBCCCCC--------CCSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCB-TCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcccccC--------CCCeeEEeeecCEEEECCCCEEEEccCCcccccCCC-CCHHHHHHHHHHHHh
Confidence 45566665554444332221 236778999999999 799999999995 3 4666 899999999999998
Q ss_pred cCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhc-----------cCCcEEEEcCCchhHHH
Q 011567 139 YGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFC-----------KKGDLIVADEGVHWGIQ 207 (483)
Q Consensus 139 ~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~-----------~~gdiI~~~~~~h~s~~ 207 (483)
++..+ +.+ +.+...+++++|++++|.+++++++||++|+..+++++. +++++|+.+..+|+.+.
T Consensus 108 ~~~~~---~~~--~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~ 182 (439)
T 2oat_A 108 LTLTS---RAF--YNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTL 182 (439)
T ss_dssp CSCCC---TTS--EESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSH
T ss_pred cCccc---Ccc--CCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCH
Confidence 65322 222 346789999999999998888888999999999998764 23467778888998887
Q ss_pred hHhhhcC------------CeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCcc----ChHHHHHHH
Q 011567 208 NGLYLSR------------STVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIA----PLDELIRLK 271 (483)
Q Consensus 208 ~g~~~s~------------~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~----~L~~l~~l~ 271 (483)
.++.+++ ..+..++++|+++|++.++. . ++++|++||+++++|.+. ++++|+++|
T Consensus 183 ~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~--~-------~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 253 (439)
T 2oat_A 183 SAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQD--P-------NVAAFMVEPIQGEAGVVVPDPGYLMGVRELC 253 (439)
T ss_dssp HHHTTCCCHHHHTTSCSCCTTEEEECSSCHHHHHHHTTS--T-------TEEEEEECSSBTTTTSBCCCTTHHHHHHHHH
T ss_pred hHhhcCCChhcccCCCCCCCCeEEeCCCCHHHHHHHhCC--C-------CEEEEEEECCCCCCCCcCCCHHHHHHHHHHH
Confidence 7777665 46788899999999988852 1 378999999999999876 599999999
Q ss_pred HHcCcEEEEeCccccccccCCCCccc-cccCCCCCceeEEEccccccccCC---CceeeccHHHHHHHHhcCCceeecCC
Q 011567 272 EKYRFRVFLDESNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALATE---GGFCTGSARVVDHQRLSSSGYVFSAS 347 (483)
Q Consensus 272 ~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~v~~~~~Di~~~s~~K~lg~~---GG~i~~~~~~~~~~~~~~~~~~fs~~ 347 (483)
++||++||+||+|++ +|++|+++. +++++.| |++ |++|++++. +|++++++++++.++...++.+| +
T Consensus 254 ~~~gillI~DEv~~g--~g~~g~~~~~~~~~~~~---Di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~--~ 324 (439)
T 2oat_A 254 TRHQVLFIADEIQTG--LARTGRWLAVDYENVRP---DIV--LLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTY--G 324 (439)
T ss_dssp HHTTCEEEEECTTTT--TTTTSSSSGGGGGTCCC---SEE--EECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSS--T
T ss_pred HHcCCEEEEeccccC--CccCCcchhHHHhCCCC---cEE--EecccccCCCCCeEEEEECHHHHhccCCCCcccCC--C
Confidence 999999999999963 677777664 7888766 776 899999753 68899999998877654445555 4
Q ss_pred CcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHH
Q 011567 348 LPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADW 425 (483)
Q Consensus 348 ~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~ 425 (483)
.||+.++++.++++.++++ ++.++++++++++++.|+++ ++++. ..+.++++++.+....+ . ...++++.
T Consensus 325 ~~~~~~aaa~aal~~~~~~-~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~g~~~~v~l~~~~~---~---~~~~l~~~ 396 (439)
T 2oat_A 325 GNPLGCRVAIAALEVLEEE-NLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNAIVIKETKD---W---DAWKVCLR 396 (439)
T ss_dssp TCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHTTS-CTTTEEEEEEETTEEEEEECCCSS---C---CHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeeeEEEEEEecCcc---H---HHHHHHHH
Confidence 5899999999999988764 58899999999999999886 44421 12467888888854210 0 12357776
Q ss_pred HHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 426 ALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 426 ~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
+++ +||++.+.. +..+|++++..+|++|+++++++|++++++
T Consensus 397 l~~-~Gv~v~~~~---------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 397 LRD-NGLLAKPTH---------GDIIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp HHH-TTEECCBSS---------SSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHH-CCeEEecCC---------CCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 665 599987631 234999999999999999999999988754
No 14
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=100.00 E-value=4.8e-39 Score=331.83 Aligned_cols=374 Identities=18% Similarity=0.171 Sum_probs=279.5
Q ss_pred CCCHHHHHHHHhhcCCCCCCcccccccccCCCccccCCCCeEE-E-CCe--eEEEeecC---CCCCCCCChHHHHHHHHH
Q 011567 63 PLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI-I-SGK--EVVNFASA---NYLGLIGHEKLLESCTSA 135 (483)
Q Consensus 63 ~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~-~-~G~--~~id~~s~---~~lG~~~~p~i~~a~~~~ 135 (483)
.++.+++.++-.+..-.|+.+.. .....|.++++++|.++| . ||| +||||+++ +++|| +||++.+|+.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh-~~p~v~~A~~~~ 103 (457)
T 3tfu_A 27 GLTPEQIIAVDGAHLWHPYSSIG--REAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGH-GHPALDQALTTQ 103 (457)
T ss_dssp CCCHHHHHHHHHHHBCCTTCCSS--CCSSCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCB-TCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhcCccccccc--ccCCCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCC-CCHHHHHHHHHH
Confidence 47766655544442212222110 112357789999999999 8 999 99999997 89999 899999999999
Q ss_pred HHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC--CCCEEEecccHHHHHhhhhhhc---------cCCcEEEEcCCchh
Q 011567 136 LEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--TPDSILYSYGLSTMFSAIPCFC---------KKGDLIVADEGVHW 204 (483)
Q Consensus 136 l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g--~e~~i~~~sG~~a~~~ai~~~~---------~~gdiI~~~~~~h~ 204 (483)
+++.+..+. ..++.+...+|+++|+++++ .+++++++||++|++.|++++. ++.++|..+..||+
T Consensus 104 ~~~~~~~~~----~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg 179 (457)
T 3tfu_A 104 LRVMNHVMF----GGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHG 179 (457)
T ss_dssp HHHCSCCCS----SSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCC
T ss_pred HHhccCccc----cccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCC
Confidence 998643221 12345788999999999995 4567777999999999988774 45568888999999
Q ss_pred HHHhHhhhcC-------------CeEEEecC-------CCHHHHHHHHHHhhhhhhhccCccEEEEEec-ccCCCCCccC
Q 011567 205 GIQNGLYLSR-------------STVVYFKH-------NDMDSLRNTLERVTADNKRAKKLRRYIVVEA-VYQNSGQIAP 263 (483)
Q Consensus 205 s~~~g~~~s~-------------~~v~~~~~-------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~-v~~~~G~i~~ 263 (483)
.+..++.+++ ..+..++. +|+++|++.+++... ++++|++|| +++++|.+.|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~-------~~aavi~ep~~~~~~G~~~~ 252 (457)
T 3tfu_A 180 DTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAG-------ELAAVVVEPVVQGAGGMRFH 252 (457)
T ss_dssp SSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGG-------GEEEEEECSSEECTTTCEEC
T ss_pred ccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCC-------CEEEEEEeCCCcCCCCcccC
Confidence 8777666532 11222222 578889888876433 389999999 8899998887
Q ss_pred ----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccCCCCCceeEEEccccccccC---CCceeeccHHHHHHH
Q 011567 264 ----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQ 335 (483)
Q Consensus 264 ----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~ 335 (483)
|++|+++|++||++||+||+|++ +|++|.++ .+++++.| |++ ||||++++ +.|++++++++++.+
T Consensus 253 ~~~~l~~l~~l~~~~gillI~DEv~~g--~gr~G~~~a~~~~~~~p---dii--t~sK~l~gG~~~lG~v~~~~~i~~~~ 325 (457)
T 3tfu_A 253 DPRYLHDLRDICRRYEVLLIFDEIATG--FGRTGALFAADHAGVSP---DIM--CVGKALTGGYLSLAATLCTADVAHTI 325 (457)
T ss_dssp CTHHHHHHHHHHHHHTCEEEEECTTTT--TTTTSSSSTHHHHTCCC---SEE--EECGGGGTTSSCCEEEEEEHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEEcCccC--CccccchhHhHhcCCCc---eEE--EEChhhhCCCcceEEEEEcHHHHHHh
Confidence 99999999999999999999985 56667655 47888877 787 89999974 347789999999988
Q ss_pred Hhc-CC--ceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCC---CceeecCCCCCEEEEEecCCC
Q 011567 336 RLS-SS--GYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIH---GLSIASNPESPIVFLILEKST 409 (483)
Q Consensus 336 ~~~-~~--~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~---~~~i~~~~~~~i~~l~l~~~~ 409 (483)
... .. .+..+.+.||++++++.++|+.++++ ++.++++++.+++++.|+++. ++... .+.+.++.+.+..+.
T Consensus 326 ~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~-~~~~~~~~~~~~l~~~L~~l~~~~~v~~v-r~~G~~~~i~l~~~~ 403 (457)
T 3tfu_A 326 SAGAAGALMHGPTFMANPLACAVSVASVELLLGQ-DWRTRITELAAGLTAGLDTARALPAVTDV-RVCGAIGVIECDRPV 403 (457)
T ss_dssp HHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHGGGGGSTTEEEE-EECSSCEEEEESSCC
T ss_pred hccCCCceeEecCCCcCHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHhcCCCeeee-ecCCeEEEEEECCcc
Confidence 532 11 11223356999999999999988764 488999999999999998753 33222 235778888885431
Q ss_pred CCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 410 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 410 ~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
+ ..++++.++++ ||++.+.. ..+|++++..+|++|+++++++|+++++++
T Consensus 404 -----~---~~~~~~~l~~~-Gv~v~~~~----------~~lRi~p~~~~t~eei~~~l~~L~~~l~~~ 453 (457)
T 3tfu_A 404 -----D---LAVATPAALDR-GVWLRPFR----------NLVYAMPPYICTPAEITQITSAMVEVARLV 453 (457)
T ss_dssp -----C---HHHHHHHHHHT-TEECCCBT----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -----c---HHHHHHHHHHC-CeEEEecC----------CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1 34577776664 99987632 349999999999999999999999998764
No 15
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=100.00 E-value=7.2e-39 Score=331.24 Aligned_cols=361 Identities=14% Similarity=0.141 Sum_probs=270.4
Q ss_pred CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (483)
Q Consensus 92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~ 167 (483)
.|.++++++|.+++ .||++||||+++ +++|| +||++.+|+.+++++.+..++ ...++.+...+|+++|++++
T Consensus 33 ~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~~~~---~~~~~~~~~~~la~~l~~~~ 108 (460)
T 3gju_A 33 PTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGY-GRQKIADAIATQAKNLAYYHA---YVGHGTEASITLAKMIIDRA 108 (460)
T ss_dssp CCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHHHHSCCCC---CTTCCCHHHHHHHHHHHHHS
T ss_pred CceEEEEeeccEEEECCCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhcccccc---ccccCCHHHHHHHHHHHhhC
Confidence 45889999999999 799999999997 88999 899999999999998654322 23456688999999999998
Q ss_pred C--CCCEEEecccHHHHHhhhhhhc---------cCCcEEEEcCCchhHHHhHhhhcCC------------eEEEe----
Q 011567 168 G--TPDSILYSYGLSTMFSAIPCFC---------KKGDLIVADEGVHWGIQNGLYLSRS------------TVVYF---- 220 (483)
Q Consensus 168 g--~e~~i~~~sG~~a~~~ai~~~~---------~~gdiI~~~~~~h~s~~~g~~~s~~------------~v~~~---- 220 (483)
+ .+++++++||++|+..+++++. ++.++|+.+..||+.+..++.+++. .+..+
T Consensus 109 ~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 188 (460)
T 3gju_A 109 PKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPY 188 (460)
T ss_dssp CTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCC
T ss_pred CCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCc
Confidence 4 4567777999999999998875 4566788899999888776665442 12222
Q ss_pred --cCCC------------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeC
Q 011567 221 --KHND------------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDE 282 (483)
Q Consensus 221 --~~~d------------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DE 282 (483)
+++| +++||+.+++...+ ++++|++||+++++|.+.| |++|+++|++||++||+||
T Consensus 189 ~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~------~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DE 262 (460)
T 3gju_A 189 YFRRTDRSMSEEQFSQHCADKLEEMILAEGPE------TIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADE 262 (460)
T ss_dssp GGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGG------GEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred cccCCccccChhHHHHHHHHHHHHHHHhcCCC------CEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 2344 57888887653222 4899999999999998777 9999999999999999999
Q ss_pred ccccccccCCCC-ccccccCCCCCceeEEEccccccccCC---CceeeccHHHHHHHHhc-----CCceeecCCCcHHHH
Q 011567 283 SNSFGVLGRSGR-GLTEHCGVPVDKIDIVTAAMGHALATE---GGFCTGSARVVDHQRLS-----SSGYVFSASLPPYLA 353 (483)
Q Consensus 283 a~s~g~lg~~G~-g~~~~~~v~~~~~Di~~~s~~K~lg~~---GG~i~~~~~~~~~~~~~-----~~~~~fs~~~~p~~~ 353 (483)
+|++ +|++|. +..+++++.| |++ |+||++++. .|++++++++++.+... ...+.++.+.||+++
T Consensus 263 v~~g--~gr~g~~~~~~~~~~~p---di~--t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~ 335 (460)
T 3gju_A 263 VVTG--FGRLGTMFGSDHYGIKP---DLI--TIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICV 335 (460)
T ss_dssp TTTT--TTTTSSSCHHHHHTCCC---SEE--EECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHH
T ss_pred cccC--CCcccccchHhhcCCCC---Cee--eeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHH
Confidence 9984 455553 3457888877 777 789999752 37889999999988532 111222335689999
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhcc----CCCceeecCCCCCEEEEEecCCCCC---chhhHHHHHHHHHHH
Q 011567 354 SAAITAIDVLEENPDLITKLKKNTAILRTGLSD----IHGLSIASNPESPIVFLILEKSTGS---MKNDLQLLEDIADWA 426 (483)
Q Consensus 354 aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~----~~~~~i~~~~~~~i~~l~l~~~~~~---~~~~~~~~~~i~~~~ 426 (483)
+++.++|+.+++. ++.++++++.+++++.|.+ .+.+... .+.+.++.+.+...... ...+.....++++.+
T Consensus 336 aaa~aal~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (460)
T 3gju_A 336 AAGVANLELIDEM-DLVTNAGETGAYFRAELAKAVGGHKNVGEV-RGDGMLAAVEFVADKDDRVFFDASQKIGPQVATAL 413 (460)
T ss_dssp HHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHTTSTTEEEE-EEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-eeeeEEEEEEEccCccccccccchHHHHHHHHHHH
Confidence 9999999988764 4788888888888877733 3333222 34577888887542211 011223355677776
Q ss_pred HHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567 427 LKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 427 l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~ 480 (483)
++ +||++.+... ...|||++++.+|++|+++++++|+++++++..
T Consensus 414 ~~-~Gv~v~~~~~--------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 458 (460)
T 3gju_A 414 AA-SGVIGRAMPQ--------GDILGFAPPLCLTREQADIVVSKTADAVKSVFA 458 (460)
T ss_dssp HH-TTEECEECSS--------SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HH-CCeEEecCCC--------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 65 5999987541 134999999999999999999999999988764
No 16
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=100.00 E-value=1.1e-38 Score=327.29 Aligned_cols=345 Identities=19% Similarity=0.219 Sum_probs=260.2
Q ss_pred CCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC
Q 011567 93 PPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG 168 (483)
Q Consensus 93 ~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g 168 (483)
|.++++++|.++| .||++||||+++ +.+|| .+|++.+|+.++++++...+ +. + +.+...+++++|++++|
T Consensus 48 ~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh-~~p~v~~ai~~~~~~~~~~~---~~-~-~~~~~~~l~~~la~~~g 121 (433)
T 1z7d_A 48 PVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGH-CHPNILNAMINQAKNLTICS---RA-F-FSVPLGICERYLTNLLG 121 (433)
T ss_dssp EEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCB-TCHHHHHHHHHHHTTCSCCC---TT-S-EEHHHHHHHHHHHHHHT
T ss_pred CceEEeeecCEEEECCCCEEEEcccchhhcccCC-CCHHHHHHHHHHHHhCCCcc---CC-c-CCHHHHHHHHHHHhhcC
Confidence 5677999999999 799999999995 46677 89999999999998864321 22 2 45788999999999999
Q ss_pred CCCEEEecccHHHHHhhhhhhc-----------cCCcEEEEcCCchhHHHhHhhhcC------------CeEEEecCCCH
Q 011567 169 TPDSILYSYGLSTMFSAIPCFC-----------KKGDLIVADEGVHWGIQNGLYLSR------------STVVYFKHNDM 225 (483)
Q Consensus 169 ~e~~i~~~sG~~a~~~ai~~~~-----------~~gdiI~~~~~~h~s~~~g~~~s~------------~~v~~~~~~d~ 225 (483)
.++++++++|++|+..+++++. ++.++|+.+..||+.+..++.+++ ..+..++++|+
T Consensus 122 ~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~ 201 (433)
T 1z7d_A 122 YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDL 201 (433)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCH
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCCCH
Confidence 8888888999999999988753 234567777789988776666654 35677888999
Q ss_pred HHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCcc----ChHHHHHHHHHcCcEEEEeCccccccccCCCCccc-ccc
Q 011567 226 DSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIA----PLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHC 300 (483)
Q Consensus 226 ~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~----~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~ 300 (483)
++|++.++. . ++++|++||+++++|.+. ++++|+++|++||++||+||+|++ +|++|.++. +++
T Consensus 202 ~~le~~l~~--~-------~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~g~~g~~~~~~~~ 270 (433)
T 1z7d_A 202 EALEEELKD--P-------NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTG--LGRTGKLLCVHHY 270 (433)
T ss_dssp HHHHHHHTS--T-------TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTT--TTTTSSSSGGGGG
T ss_pred HHHHHHhCC--C-------CEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccC--CCcCCcchhhHhc
Confidence 999998851 1 378999999999999876 499999999999999999999973 677777654 778
Q ss_pred CCCCCceeEEEccccccccCC---CceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 011567 301 GVPVDKIDIVTAAMGHALATE---GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNT 377 (483)
Q Consensus 301 ~v~~~~~Di~~~s~~K~lg~~---GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~ 377 (483)
++.| |++ |++|++|+. +|++++++++++.++...++.+| +.||+.++++.++++.+++. ++.++++++.
T Consensus 271 ~~~~---di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~--~~~~~~~aaa~aal~~~~~~-~~~~~~~~~~ 342 (433)
T 1z7d_A 271 NVKP---DVI--LLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTY--GGNPLAASICVEALNVLINE-KLCENAEKLG 342 (433)
T ss_dssp TCCC---SEE--EECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTT--TTCHHHHHHHHHHHHHHHHT-THHHHHHHHH
T ss_pred CCCC---CEE--EECccccCCCCCeEEEEECHHHHhhhccccccccC--CCCHHHHHHHHHHHHHHHhc-cHHHHHHHHH
Confidence 8766 776 899999843 68899999998877654344444 45899999999999988764 5889999999
Q ss_pred HHHHHhhccC-CCceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEE
Q 011567 378 AILRTGLSDI-HGLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLF 454 (483)
Q Consensus 378 ~~l~~~L~~~-~~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~ 454 (483)
+++++.|+++ .++++. ..+.++++++.+.... ....++++.+++ +||++.+.. +..+|++
T Consensus 343 ~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~-------~~~~~~~~~l~~-~Gv~v~~~~---------~~~iRi~ 405 (433)
T 1z7d_A 343 GPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL-------VNVLDICLKLKE-NGLITRDVH---------DKTIRLT 405 (433)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT-------CCHHHHHHHHHH-TTEECCEET---------TTEEEEC
T ss_pred HHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh-------hHHHHHHHHHHH-CCeEEecCC---------CCEEEEE
Confidence 9999999764 133211 1246788888885321 013357776665 599998641 2349999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567 455 VSAAHSEADLVKACESLKRISAVVL 479 (483)
Q Consensus 455 ~~~~~t~edi~~~~~~l~~~~~~~~ 479 (483)
++..+|++|+++++++|+++++++.
T Consensus 406 ~~~~~t~e~i~~~l~~l~~~l~~~~ 430 (433)
T 1z7d_A 406 PPLCITKEQLDECTEIIVKTVKFFD 430 (433)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988763
No 17
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=100.00 E-value=3.8e-39 Score=331.24 Aligned_cols=377 Identities=18% Similarity=0.161 Sum_probs=284.4
Q ss_pred CCHHHHHHHHhhcCCCCCCcccccccccCCCccccCCCCeEE-ECCeeEEEeecCCC---CCCCCChHHHHHHHHHHHhc
Q 011567 64 LTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI-ISGKEVVNFASANY---LGLIGHEKLLESCTSALEKY 139 (483)
Q Consensus 64 l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~-~~G~~~id~~s~~~---lG~~~~p~i~~a~~~~l~~~ 139 (483)
++.+++.+..+++.|.... ...|.++++++|.+++ .+|++||||+++.+ +|| .+|++.+++.++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~ 75 (439)
T 3dxv_A 4 MTKALYDRDGAAIGNLQKL-------RFFPLAISGGRGARLIEENGRELIDLSGAWGAASLGY-GHPAIVAAVSAAAANP 75 (439)
T ss_dssp --CCHHHHHHHHBCGGGCC-------CSSCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCB-SCHHHHHHHHHHHHSC
T ss_pred CcHHHHHHHHHHhccCccC-------CCCCceEEEeeeCEEEeCCCCEEEECCCchhhccCCC-CCHHHHHHHHHHHHhc
Confidence 4455666666666554332 1357889999999999 89999999999865 999 8999999999999986
Q ss_pred CCCCCCCCCcccChHHHHHHHHHHHhhh--CC-CCEEEecccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhhhc
Q 011567 140 GVGSCGPRGFYGTIDVHLDCEARIAKFL--GT-PDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYLS 213 (483)
Q Consensus 140 g~g~~~~~~~~g~~~~~~~l~~~La~~~--g~-e~~i~~~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~~s 213 (483)
.. .+ ...+..+.+.+++++|++++ +. ++++++++|++|+..++++ +++++++|+++..+|+.+..++.++
T Consensus 76 ~~-~~---~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~ 151 (439)
T 3dxv_A 76 AG-AT---ILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFS 151 (439)
T ss_dssp SC-SC---SSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-
T ss_pred cC-cc---ccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhc
Confidence 32 11 23456789999999999999 45 5778889999999999987 5688899999999999888877776
Q ss_pred CCeE--------------EEecCC----------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hH
Q 011567 214 RSTV--------------VYFKHN----------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LD 265 (483)
Q Consensus 214 ~~~v--------------~~~~~~----------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~ 265 (483)
+... ..++++ |+++||+.+++... .++++|+++|+++++|.+.| ++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~------~~~~~vi~~p~~~~~G~~~~~~~~l~ 225 (439)
T 3dxv_A 152 GHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPA------GSIGAAFIEPIQSDGGLIVPPDGFLR 225 (439)
T ss_dssp ------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCT------TCEEEEEECSSBSTTTSBCCCTTHHH
T ss_pred CCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCC------CCEEEEEEccccCCCCCccCCHHHHH
Confidence 6432 344555 58888888852211 24899999999999999998 99
Q ss_pred HHHHHHHHcCcEEEEeCccccccccCCCCc-cccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCce
Q 011567 266 ELIRLKEKYRFRVFLDESNSFGVLGRSGRG-LTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGY 342 (483)
Q Consensus 266 ~l~~l~~k~~~~li~DEa~s~g~lg~~G~g-~~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~ 342 (483)
+|+++|++||++||+||+|+. +|++|.. ..+++++.| |++ |+||++++ +.||+++++++++.++......
T Consensus 226 ~l~~l~~~~~~~li~DE~~~g--~g~~g~~~~~~~~~~~~---di~--s~sK~~~~G~riG~~~~~~~~~~~~~~~~~~~ 298 (439)
T 3dxv_A 226 KFADICRAHGILVVCDEVKVG--LARSGRLHCFEHEGFVP---DIL--VLGKGLGGGLPLSAVIAPAEILDCASAFAMQT 298 (439)
T ss_dssp HHHHHHHHTTCEEEEECTTTC--TTTTSSSSGGGGTTCCC---SEE--EECGGGGTTSCCEEEEEEHHHHTSCSSSSCCT
T ss_pred HHHHHHHHcCCEEEEeccccC--CCcCchhhHHHhcCCCC---CEE--EEcchhcCCcceEEEEECHHHHhhhcCCCcCC
Confidence 999999999999999999983 5666663 447788766 776 89999984 2388999999998876543343
Q ss_pred eecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhhHHH
Q 011567 343 VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKNDLQL 418 (483)
Q Consensus 343 ~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~ 418 (483)
+| .+|+.++++.++++.+++ +++.++++++.+++++.|.++ +.+... .+.+.++++.+.........+...
T Consensus 299 t~---~~~~~~~aa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~ 373 (439)
T 3dxv_A 299 LH---GNPISAAAGLAVLETIDR-DDLPAMAERKGRLLRDGLSELAKRHPLIGDI-RGRGLACGMELVCDRQSREPARAE 373 (439)
T ss_dssp TT---TCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEEEETTTTEECHHH
T ss_pred Cc---ccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCccccCCCHHH
Confidence 44 589999999999998876 458888999999988888764 223222 346778888774322111123344
Q ss_pred HHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 419 LEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 419 ~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
..++++.++++ ||++.+.... +..+||+++..+|++|+++++++|+++++++
T Consensus 374 ~~~~~~~l~~~-Gv~v~~~~~~-------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 374 TAKLIYRAYQL-GLVVYYVGMN-------GNVLEFTPPLTITETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp HHHHHHHHHHH-TEECEEESTT-------SCEEEECCCTTCCHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHC-CcEEeecCCC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 56788877765 9999876421 2459999999999999999999999998765
No 18
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=100.00 E-value=1.6e-38 Score=328.48 Aligned_cols=358 Identities=16% Similarity=0.165 Sum_probs=268.5
Q ss_pred cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567 91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 166 (483)
Q Consensus 91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~ 166 (483)
..|.++++++|.+++ .||++||||+++ +.+|| +||+|.+|+.+++++...+++. ..++.+...+++++|+++
T Consensus 31 ~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~~~~~---~~~~~~~~~~la~~l~~~ 106 (459)
T 4a6r_A 31 AGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGY-GRKDFAEAARRQMEELPFYNTF---FKTTHPAVVELSSLLAEV 106 (459)
T ss_dssp ---CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHHHCSCCCTT---SSSCCHHHHHHHHHHHHH
T ss_pred cCCeeEEEeecCEEEECCCCEEEECCCchhcccCCC-CCHHHHHHHHHHHHhccccccc---cccCCHHHHHHHHHHHHh
Confidence 357889999999999 799999999997 88999 7999999999999986543222 334668899999999999
Q ss_pred hC--CCCEEEecccHHHHHhhhhhhcc---------CCcEEEEcCCchhHHHhHhhhcCC------------eEEEec--
Q 011567 167 LG--TPDSILYSYGLSTMFSAIPCFCK---------KGDLIVADEGVHWGIQNGLYLSRS------------TVVYFK-- 221 (483)
Q Consensus 167 ~g--~e~~i~~~sG~~a~~~ai~~~~~---------~gdiI~~~~~~h~s~~~g~~~s~~------------~v~~~~-- 221 (483)
++ .++++++++|++|+..+++++.. +..+|+.+..||+....+..+++. .+..++
T Consensus 107 ~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 186 (459)
T 4a6r_A 107 TPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQP 186 (459)
T ss_dssp SCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCC
T ss_pred CCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCC
Confidence 85 45677779999999999988763 456778899999877666655442 222222
Q ss_pred ----CC---C--------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeC
Q 011567 222 ----HN---D--------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDE 282 (483)
Q Consensus 222 ----~~---d--------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DE 282 (483)
++ | +++||+.+++...+ ++++|++||+++++|.+.| |++|+++|++||++||+||
T Consensus 187 ~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~------~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DE 260 (459)
T 4a6r_A 187 WWYKHGKDMTPDEFGVVAARWLEEKILEIGAD------KVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADE 260 (459)
T ss_dssp CHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGG------GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred ccccCCcccCHHHHHHHHHHHHHHHHHHcCCC------CEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 13 2 67788887654322 4799999999999999887 9999999999999999999
Q ss_pred ccccccccCCCC-ccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHh---cCCceeecCCCcHHHHHH
Q 011567 283 SNSFGVLGRSGR-GLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRL---SSSGYVFSASLPPYLASA 355 (483)
Q Consensus 283 a~s~g~lg~~G~-g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~---~~~~~~fs~~~~p~~~aa 355 (483)
+|++ +|++|. +..+++++.| |++ ||||++++.| |++++++++++.+.. ..++.+| +.||+++++
T Consensus 261 v~~g--~gr~G~~~~~~~~~~~p---di~--t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~--~~~~~~~aa 331 (459)
T 4a6r_A 261 VICG--FGRTGEWFGHQHFGFQP---DLF--TAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTY--SGHPVCAAV 331 (459)
T ss_dssp TTTT--TTTTSSSSHHHHHTCCC---SEE--EECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHH--CSCHHHHHH
T ss_pred cccC--CCcccccchHhhcCCCC---Cee--ehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCC--CCCHHHHHH
Confidence 9984 455564 3457888877 777 7899997544 889999999998863 2223344 458999999
Q ss_pred HHHHHHHHhcCcHHHHHHH-HHHHHHHHhh-ccCC---CceeecCCCCCEEEEEecCCCCC---chhhHHHHHHHHHHHH
Q 011567 356 AITAIDVLEENPDLITKLK-KNTAILRTGL-SDIH---GLSIASNPESPIVFLILEKSTGS---MKNDLQLLEDIADWAL 427 (483)
Q Consensus 356 a~~al~~l~~~~~~~~~l~-~~~~~l~~~L-~~~~---~~~i~~~~~~~i~~l~l~~~~~~---~~~~~~~~~~i~~~~l 427 (483)
+.++|+.++++ ++.++++ ++.+++++.| +.+. .+... .+.+.++.+.+...... ...+.....++++.++
T Consensus 332 a~aal~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 409 (459)
T 4a6r_A 332 AHANVAALRDE-GIVQRVKDDIGPYMQKRWRETFSRFEHVDDV-RGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFF 409 (459)
T ss_dssp HHHHHHHHHHT-CHHHHHHHTHHHHHHHHHHHHHTTCTTEEEE-EEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EEEEEEEEEEEecCccccccccchHHHHHHHHHHHH
Confidence 99999988764 4788888 8888888877 4443 23222 34677888877532211 0112234567777766
Q ss_pred HhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567 428 KEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 428 ~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~ 480 (483)
+ +||++.+.. ..+||++++.+|++|+++++++|+++++++..
T Consensus 410 ~-~Gv~v~~~g----------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (459)
T 4a6r_A 410 R-NNLIMRACG----------DHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQ 451 (459)
T ss_dssp H-TTEECEEET----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred H-CCeEEecCC----------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6 599998753 23999999999999999999999999987653
No 19
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=100.00 E-value=4.7e-39 Score=331.55 Aligned_cols=358 Identities=17% Similarity=0.140 Sum_probs=257.8
Q ss_pred cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567 91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 166 (483)
Q Consensus 91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~ 166 (483)
..|+++++++|.++| .||++||||+++ +++|| +||+|.+|+.+++++.+..+ ...++.+...+++++|+++
T Consensus 25 ~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~~~----~~~~~~~~~~~la~~l~~~ 99 (448)
T 3dod_A 25 ENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGH-RKKELDDAIKKQLGKIAHST----LLGMTNVPATQLAETLIDI 99 (448)
T ss_dssp HSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCB-SCHHHHHHHHHHHTTCSCCC----CSSSEEHHHHHHHHHHHHH
T ss_pred CCCceEEEeeeCEEEECCCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhccCcc----ccccCCHHHHHHHHHHHHh
Confidence 357889999999999 799999999995 78999 69999999999998853321 1334568889999999999
Q ss_pred hC--CCCEEEecccHHHHHhhhhhhcc---------CCcEEEEcCCchhHHHhHhhhcCCe------------EEEecCC
Q 011567 167 LG--TPDSILYSYGLSTMFSAIPCFCK---------KGDLIVADEGVHWGIQNGLYLSRST------------VVYFKHN 223 (483)
Q Consensus 167 ~g--~e~~i~~~sG~~a~~~ai~~~~~---------~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~~~~ 223 (483)
++ .+++++++||++|+..|++++.. +.++|+.+..||+....++.+++.. +..++.+
T Consensus 100 ~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (448)
T 3dod_A 100 SPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIP 179 (448)
T ss_dssp SCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCC
T ss_pred CCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCC
Confidence 95 45777789999999999988743 4557777888898877666655422 2223332
Q ss_pred ----------------CHHHHHHHHHHhhhhhhhccCccEEEEEeccc-CCCCCccC----hHHHHHHHHHcCcEEEEeC
Q 011567 224 ----------------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVY-QNSGQIAP----LDELIRLKEKYRFRVFLDE 282 (483)
Q Consensus 224 ----------------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~-~~~G~i~~----L~~l~~l~~k~~~~li~DE 282 (483)
|+++||+.+++... ++++|++||++ +++|.+.| |++|+++|++||++||+||
T Consensus 180 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~-------~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE 252 (448)
T 3dod_A 180 YVYRSESGDPDECRDQCLRELAQLLEEHHE-------EIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDE 252 (448)
T ss_dssp CCTTSSSCCHHHHHHHHHHHHHHHHHHHGG-------GEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred ccccCCccchhhhhHHHHHHHHHHHHhCCC-------CEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEec
Confidence 37889988874322 37899999999 99998877 9999999999999999999
Q ss_pred ccccccccCCCCcc-ccccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHh-------cCCceeecCCCcHH
Q 011567 283 SNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRL-------SSSGYVFSASLPPY 351 (483)
Q Consensus 283 a~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~-------~~~~~~fs~~~~p~ 351 (483)
+|++ +|++|.++ .+++++.| |++ |+||++++ +.|++++++++++.++. ..++ ++.+.||+
T Consensus 253 v~~g--~g~~g~~~a~~~~~~~~---di~--t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~--~t~~~~~~ 323 (448)
T 3dod_A 253 VATG--FGRTGKMFACEHENVQP---DLM--AAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHG--HSYTGNQL 323 (448)
T ss_dssp TTTT--TTTTSSSSGGGGGTCCC---SEE--EECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCC--CTTTTCHH
T ss_pred cccC--CCcccchhhhhhcCCCC---CEE--EecccccCCcCceEEEEECHHHHHHhhhccccCCccccc--CCCCcCHH
Confidence 9984 45556543 57888877 776 78999973 23678999999998765 2222 23356899
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCcee--ecCCCCCEEEEEecCCCCCch---hhHHHHHHHHHHH
Q 011567 352 LASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSI--ASNPESPIVFLILEKSTGSMK---NDLQLLEDIADWA 426 (483)
Q Consensus 352 ~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i--~~~~~~~i~~l~l~~~~~~~~---~~~~~~~~i~~~~ 426 (483)
.++++.++|+.+++. ++.++++++.+++++.|.++..++. ...+.+.++++.+........ .......++++.+
T Consensus 324 ~~aaa~aal~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 402 (448)
T 3dod_A 324 GCAVALENLALFESE-NIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKM 402 (448)
T ss_dssp HHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHH
Confidence 999999999988764 4788889998888888866433321 113357788888754321100 0111134677776
Q ss_pred HHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567 427 LKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD 481 (483)
Q Consensus 427 l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~ 481 (483)
++ +||++.+.. ..||++++..+|++||++++++|+++++++...
T Consensus 403 ~~-~Gv~~~~~~----------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 446 (448)
T 3dod_A 403 RE-LGMLTRPLG----------DVIAFLPPLASTAEELSEMVAIMKQAIHEVTSL 446 (448)
T ss_dssp HH-TTEECCEET----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HH-CCcEEeccC----------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 65 599997652 339999999999999999999999999987653
No 20
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=9.1e-38 Score=322.18 Aligned_cols=363 Identities=19% Similarity=0.265 Sum_probs=270.8
Q ss_pred cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567 91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 166 (483)
Q Consensus 91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~ 166 (483)
..|.++++++|.++| .||++||||+++ +++|| +||+|.+|+.+++++... .+. ..+..+...+|+++|+++
T Consensus 45 ~~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh-~~p~v~~A~~~~~~~~~~-~~~---~~~~~~~~~~la~~l~~~ 119 (453)
T 4ffc_A 45 TAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGA-SHPAVAAAIADQATHFTH-TCF---MVTPYEQYVQVAELLNAL 119 (453)
T ss_dssp SCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCT-TCHHHHHHHHHHHHHCSC-CTT---TTSCCHHHHHHHHHHHHH
T ss_pred CCCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCC-CCHHHHHHHHHHHHhccc-ccc---CcCCCHHHHHHHHHHHHh
Confidence 457889999999999 799999999996 78999 799999999999998532 111 234568889999999999
Q ss_pred hC---CCCEEEecccHHHHHhhhhhh---ccCCcEEEEcCCchhHHHhHhhhcCC-------------eEEEecCC----
Q 011567 167 LG---TPDSILYSYGLSTMFSAIPCF---CKKGDLIVADEGVHWGIQNGLYLSRS-------------TVVYFKHN---- 223 (483)
Q Consensus 167 ~g---~e~~i~~~sG~~a~~~ai~~~---~~~gdiI~~~~~~h~s~~~g~~~s~~-------------~v~~~~~~---- 223 (483)
++ .+++++++||++|+..|++.. +++.++|+.+..||+.+..++.+++. .+..++.+
T Consensus 120 ~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (453)
T 4ffc_A 120 TPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLR 199 (453)
T ss_dssp SSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTT
T ss_pred CCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCcccc
Confidence 97 346777799999999998765 46778888999999888777666543 34444443
Q ss_pred C------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCC
Q 011567 224 D------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSG 293 (483)
Q Consensus 224 d------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G 293 (483)
| .+.++..++...... .+.++++|++||+++++|.+.| |++|+++|++||++||+||+|+. +|++|
T Consensus 200 ~~~g~~~~~~~~~~~~~l~~~i--~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g--~g~~g 275 (453)
T 4ffc_A 200 DEPGLTGEEAARRAISRIETQI--GAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTG--FARTG 275 (453)
T ss_dssp SCTTCCHHHHHHHHHHHHHHHT--CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTT--TTTTS
T ss_pred CccccchHHHHHHHHHHHHHhc--CCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccC--CCccc
Confidence 3 344444333322110 1125899999999999999887 99999999999999999999974 45555
Q ss_pred Ccc-ccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHH
Q 011567 294 RGL-TEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLI 370 (483)
Q Consensus 294 ~g~-~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~ 370 (483)
.+. .+++++.| |++ ||+|+++. +.|++++++++++.+....++.+|+ .||+.++++.++++.+++. ++.
T Consensus 276 ~~~a~~~~~~~p---di~--t~sK~~~~G~~~G~~~~~~~i~~~~~~~~~~~t~~--~~~~~~aaa~aal~~~~~~-~~~ 347 (453)
T 4ffc_A 276 AWFASEHEGIVP---DIV--TMAKGIAGGMPLSAVTGRAELMDAVYAGGLGGTYG--GNPVTCAAAVAALGVMREL-DLP 347 (453)
T ss_dssp SSSTHHHHTCCC---SEE--EECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSS--SCHHHHHHHHHHHHHHHHT-THH
T ss_pred ccchhhhcCCCc---chH--hhhhhhcCCcCeEEEEECHHHHhhhcccCcCCCCC--cCHHHHHHHHHHHHHhhhh-hHH
Confidence 543 57888876 776 78999974 2388899999998876554444444 5899999999999988664 478
Q ss_pred HHHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCC
Q 011567 371 TKLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCR 446 (483)
Q Consensus 371 ~~l~~~~~~l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~ 446 (483)
++++++.+++++.|.++ +.+... .+.+.++++.+... .....+.....++++.+++ +||++.+....
T Consensus 348 ~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~------ 418 (453)
T 4ffc_A 348 ARARAIEASVTSRLSALAEEVDIIGEV-RGRGAMLAIEIVKP-GTLEPDAALTKSIAAEALS-QGVLILTCGTF------ 418 (453)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSEEEE-EEETTEEEEEEBCT-TSCCBCHHHHHHHHHHHHH-TTEECCEECTT------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCeEEE-EeeceEEEEEEecC-cccCCCHHHHHHHHHHHHh-CCCEEecCCCC------
Confidence 88888888888888653 333222 34577888887541 1111233456677887665 59999875321
Q ss_pred CCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567 447 LPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 447 ~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~ 480 (483)
...+|++++..+|++|+++++++|+++++++.+
T Consensus 419 -~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (453)
T 4ffc_A 419 -GNVIRLLPPLVIGDDLLDEGITALSDIIRAKAS 451 (453)
T ss_dssp -SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 234999999999999999999999999988754
No 21
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=100.00 E-value=1.8e-37 Score=319.93 Aligned_cols=357 Identities=17% Similarity=0.261 Sum_probs=267.0
Q ss_pred cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567 91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 166 (483)
Q Consensus 91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~ 166 (483)
..|.++++++|.++| .||++||||+++ +.+|| +||++.+|+.+++++... .+. ..+..+...+|+++|+++
T Consensus 42 ~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh-~~p~v~~A~~~~~~~~~~-~~~---~~~~~~~~~~la~~l~~~ 116 (451)
T 3oks_A 42 TMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGN-SAPKVVEAVRSQVGDFTH-TCF---MVTPYEGYVAVCEQLNRL 116 (451)
T ss_dssp SCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCT-TCHHHHHHHHHHHTTCSC-CTT---TTSCCHHHHHHHHHHHHH
T ss_pred CCCceEEEeecCEEEECCCCEEEEcCCCccccccCC-CCHHHHHHHHHHHHhccc-ccC---CccCCHHHHHHHHHHHHh
Confidence 457889999999999 799999999996 78999 799999999999987532 111 234567889999999999
Q ss_pred hC---CCCEEEecccHHHHHhhhhhh---ccCCcEEEEcCCchhHHHhHhhhcCC-------------eEEEecCC----
Q 011567 167 LG---TPDSILYSYGLSTMFSAIPCF---CKKGDLIVADEGVHWGIQNGLYLSRS-------------TVVYFKHN---- 223 (483)
Q Consensus 167 ~g---~e~~i~~~sG~~a~~~ai~~~---~~~gdiI~~~~~~h~s~~~g~~~s~~-------------~v~~~~~~---- 223 (483)
++ .+++++++||++|+..|++.. +++..+|..+..||+.+..++.+++. .+..++.+
T Consensus 117 ~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (451)
T 3oks_A 117 TPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFR 196 (451)
T ss_dssp SSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHH
T ss_pred CCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCcccc
Confidence 96 346777799999999998765 46677888999999887776665442 34455544
Q ss_pred C-----------HHHHH---HHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccc
Q 011567 224 D-----------MDSLR---NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNS 285 (483)
Q Consensus 224 d-----------~~~Le---~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s 285 (483)
+ .++++ +.+++.. .+.++++|++||+++++|.+.| |++|+++|++||++||+||+|+
T Consensus 197 ~~~~g~~~~~~~~~~~~~~~~~l~~~~-----~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~ 271 (451)
T 3oks_A 197 DAEFGKELATDGELAAKRAITVIDKQI-----GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQT 271 (451)
T ss_dssp HGGGCTTTTTCHHHHHHHHHHHHHHHT-----CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred ccccccccchhhHHHHHHHHHHHHhhc-----CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 1 12343 3333211 1125899999999999999887 9999999999999999999998
Q ss_pred cccccCCCCcc-ccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHH
Q 011567 286 FGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV 362 (483)
Q Consensus 286 ~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~ 362 (483)
. +|++|.+. .+++++.| |++ |++|+++. +.|++++++++++.++...++.+| +.||+.++++.++++.
T Consensus 272 g--~g~~g~~~~~~~~~~~p---di~--t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~~t~--~~~~~~~aaa~aal~~ 342 (451)
T 3oks_A 272 G--FARTGAMFACEHEGIDP---DLI--VTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGGTY--GGNPIACAAALATIET 342 (451)
T ss_dssp T--TTTTSSSSGGGGGTCCC---SEE--EECGGGGTTSSCEEEEEEHHHHTCSCTTSBCCSS--SSCHHHHHHHHHHHHH
T ss_pred C--CCccccchhhhhcCCCC---Cee--eehhhhhCCcceEEEEECHHHHhhhcCCCcCCCC--CCCHHHHHHHHHHHHH
Confidence 4 45556543 57888876 777 89999974 237888999999887654444444 4589999999999998
Q ss_pred HhcCcHHHHHHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeec
Q 011567 363 LEENPDLITKLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSK 438 (483)
Q Consensus 363 l~~~~~~~~~l~~~~~~l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~ 438 (483)
+++. ++.++++++.+++++.|.++ +.+... .+.+.++++.+... .....+.....++++.+++ +||++.+..
T Consensus 343 ~~~~-~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~ 418 (451)
T 3oks_A 343 IESE-GLVARAQQIEKIMKDRLGRLQAEDDRIGDV-RGRGAMIAMELVKA-GTTEPDADLTKALCAGAHA-AGVIVLSCG 418 (451)
T ss_dssp HHHT-THHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEBST-TSCCBCHHHHHHHHHHHHH-TTEECEEEC
T ss_pred Hhhh-hHHHHHHHHHHHHHHHHHHHHhhCCCeEEE-EEeeEEEEEEEecC-ccCCCCHHHHHHHHHHHHh-CCcEEecCC
Confidence 8764 58888899998888888654 222222 34577888887541 1111233445677877665 599998753
Q ss_pred ccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 439 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 439 ~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
.. ...+|++++..+|++++++++++|++++++
T Consensus 419 ~~-------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 419 TY-------GNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp TT-------SCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred CC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 21 134999999999999999999999998753
No 22
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=1.6e-37 Score=318.77 Aligned_cols=354 Identities=19% Similarity=0.237 Sum_probs=267.6
Q ss_pred cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567 91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 166 (483)
Q Consensus 91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~ 166 (483)
..|.++++++|.++| .||++||||+++ +++|| +||++.+|+.+++++... +++..+...+|+++|+++
T Consensus 36 ~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~-------~~~~~~~~~~l~~~la~~ 107 (434)
T 3l44_A 36 GAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGH-AHPHITKAITTAAENGVL-------YGTPTALEVKFAKMLKEA 107 (434)
T ss_dssp SCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCB-TCHHHHHHHHHHHHHCSC-------CSSCCHHHHHHHHHHHHH
T ss_pred CCCceEEEeecCEEEECCCCEEEECCCchhccccCC-CCHHHHHHHHHHHHhCcC-------CCCCCHHHHHHHHHHHHh
Confidence 457889999999999 799999999997 78999 899999999999988311 233457889999999999
Q ss_pred hC-CCCEEEecccHHHHHhhhhhhc---cCCcEEEEcCCchhHHHhHhhhcCC-------------------eEEEecCC
Q 011567 167 LG-TPDSILYSYGLSTMFSAIPCFC---KKGDLIVADEGVHWGIQNGLYLSRS-------------------TVVYFKHN 223 (483)
Q Consensus 167 ~g-~e~~i~~~sG~~a~~~ai~~~~---~~gdiI~~~~~~h~s~~~g~~~s~~-------------------~v~~~~~~ 223 (483)
++ .++++++++|++|+..+++++. ++..+|+.+..+|+....++...+. .+..++++
T Consensus 108 ~~~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (434)
T 3l44_A 108 MPALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN 187 (434)
T ss_dssp CTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTT
T ss_pred CCCCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcc
Confidence 85 5566777999999999988764 4556777788888776555443332 56778889
Q ss_pred CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-cc
Q 011567 224 DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TE 298 (483)
Q Consensus 224 d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~ 298 (483)
|+++|++.+++..+ ++++|++||+++++|.+.| |++|+++|++||++||+||+|+.. ++|.+. .+
T Consensus 188 d~~~le~~l~~~~~-------~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~---~~g~~~~~~ 257 (434)
T 3l44_A 188 NVETLKEALDKWGH-------EVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF---RFMYGGAQD 257 (434)
T ss_dssp CHHHHHHHHHHHGG-------GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT---TSSSSCHHH
T ss_pred cHHHHHHHHHhCCC-------CEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce---eccccHHHH
Confidence 99999999976543 3789999999999999988 999999999999999999999864 445443 57
Q ss_pred ccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceee-cCCCcHHHHHHHHHHHHHHhcCcHHHHHHHH
Q 011567 299 HCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVF-SASLPPYLASAAITAIDVLEENPDLITKLKK 375 (483)
Q Consensus 299 ~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~f-s~~~~p~~~aaa~~al~~l~~~~~~~~~l~~ 375 (483)
++++.| |++ |+||++|+ +.|++++++++++.+......+.+ +.+.+|++++++.++++.+++ +++.+++++
T Consensus 258 ~~~~~~---di~--t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~-~~~~~~~~~ 331 (434)
T 3l44_A 258 LLGVTP---DLT--ALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ-EGLYEKLDE 331 (434)
T ss_dssp HHTCCC---SEE--EEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHH
T ss_pred HcCCCC---Cee--ehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc-ccHHHHHHH
Confidence 888876 776 79999972 237888999999887653222222 335689999999999998876 458899999
Q ss_pred HHHHHHHhhccC---CCceeecCCCCCEEEEEecCCCCCc-----hhhHHHHHHHHHHHHHhCCEEEEeecccccccCCC
Q 011567 376 NTAILRTGLSDI---HGLSIASNPESPIVFLILEKSTGSM-----KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRL 447 (483)
Q Consensus 376 ~~~~l~~~L~~~---~~~~i~~~~~~~i~~l~l~~~~~~~-----~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~ 447 (483)
+.+++++.|+++ .++.....+.+.++.+.+....... ..+.....++.+.+++ +||++.+...
T Consensus 332 ~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~-------- 402 (434)
T 3l44_A 332 LGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQ-EGVNLAPSKY-------- 402 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHH-TTEECCSSTT--------
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHH-CCeEEeecCC--------
Confidence 999999888764 1222222346778888875321110 0122334567777665 5999976532
Q ss_pred CCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567 448 PVGIRLFVSAAHSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 448 ~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~ 480 (483)
+.+|+ +..+|++|+++++++|+++++++..
T Consensus 403 -~~~rl--~~~~t~e~i~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 403 -EAWFL--TTEHTKEDIEYTIEAVGRAFAALAD 432 (434)
T ss_dssp -CCEEC--CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CcEEE--ecccCHHHHHHHHHHHHHHHHHHHh
Confidence 23676 5689999999999999999988754
No 23
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=100.00 E-value=1.8e-37 Score=320.03 Aligned_cols=360 Identities=13% Similarity=0.125 Sum_probs=268.1
Q ss_pred cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567 91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 166 (483)
Q Consensus 91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~ 166 (483)
..|+++++++|.+++ .||++||||+++ +++|| +||+|.+|+.+++++.+. + . ..+..+...+++++|+++
T Consensus 30 ~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~-~-~---~~~~~~~~~~la~~l~~~ 103 (452)
T 3n5m_A 30 NSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGY-GRKELAEAAYKQLQTLSY-F-P---MSQSHEPAIKLAEKLNEW 103 (452)
T ss_dssp GGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHTTCCC-C-C---TTSEEHHHHHHHHHHHHH
T ss_pred CCCceEEEeeeCEEEECCCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhcCC-c-c---cccCCHHHHHHHHHHHHh
Confidence 457889999999999 799999999998 89999 799999999999988644 1 1 234568899999999999
Q ss_pred hCCC-CEEEecccHHHHHhhhhhhc---------cCCcEEEEcCCchhHHHhHhhhcCCe------------EEEe----
Q 011567 167 LGTP-DSILYSYGLSTMFSAIPCFC---------KKGDLIVADEGVHWGIQNGLYLSRST------------VVYF---- 220 (483)
Q Consensus 167 ~g~e-~~i~~~sG~~a~~~ai~~~~---------~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~---- 220 (483)
++.+ +++++++|++|+..+++++. ++.++|+.+..||+....++.+++.. +..+
T Consensus 104 ~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (452)
T 3n5m_A 104 LGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPD 183 (452)
T ss_dssp HTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCC
T ss_pred CCCCceEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCc
Confidence 9753 35666999999999998876 55567888889998776666554421 2222
Q ss_pred ----cCCC---------HHHHHHHHHHhhhhhhhccCccEEEEEecc-cCCCCCccC----hHHHHHHHHHcCcEEEEeC
Q 011567 221 ----KHND---------MDSLRNTLERVTADNKRAKKLRRYIVVEAV-YQNSGQIAP----LDELIRLKEKYRFRVFLDE 282 (483)
Q Consensus 221 ----~~~d---------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v-~~~~G~i~~----L~~l~~l~~k~~~~li~DE 282 (483)
++|| +++||+.+++... .++++|++||+ ++ +|.+.| |++|+++|++||++||+||
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~------~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DE 256 (452)
T 3n5m_A 184 CYRMPGIERENIYDVECVKEVDRVMTWELS------ETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDE 256 (452)
T ss_dssp TTTSTTTTTSCGGGCHHHHHHHHHHHHHCG------GGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEEC
T ss_pred cccCccCCchhhHHHHHHHHHHHHHHhcCC------CCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEec
Confidence 2355 8899988873221 14789999999 78 998887 9999999999999999999
Q ss_pred ccccccccCCCCcc-ccccCCCCCceeEEEccccccccCCC----ceeeccHHHHHHHHh--cCCc--eeecCCCcHHHH
Q 011567 283 SNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATEG----GFCTGSARVVDHQRL--SSSG--YVFSASLPPYLA 353 (483)
Q Consensus 283 a~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~~G----G~i~~~~~~~~~~~~--~~~~--~~fs~~~~p~~~ 353 (483)
+|+. +|++|.++ .+++++.| |++ |+||++++ | |++++++++++.++. .... +..+.+.||+++
T Consensus 257 v~~g--~g~~g~~~~~~~~~~~~---di~--t~sK~l~~-G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~ 328 (452)
T 3n5m_A 257 VICG--FGRTGKAFGFMNYDVKP---DII--TMAKGITS-AYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAAC 328 (452)
T ss_dssp TTTT--TTTTSSSSGGGGTTCCC---SEE--EECGGGGT-TSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHH
T ss_pred chhC--CCcccccchhhhcCCCC---CEE--eecccccC-CCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHH
Confidence 9984 45556543 57888876 777 79999975 5 889999999998853 1111 123335689999
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCc-hhhHHHHHHHHHHHHH
Q 011567 354 SAAITAIDVLEENPDLITKLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSM-KNDLQLLEDIADWALK 428 (483)
Q Consensus 354 aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~-~~~~~~~~~i~~~~l~ 428 (483)
+++.++++.+++. ++.++++++.+++++.|.++ +.+... .+.+.++.+.+....... ..+.....++++.+++
T Consensus 329 aaa~aal~~~~~~-~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 406 (452)
T 3n5m_A 329 ALALKNLEIIENE-NLIERSAQMGSLLLEQLKEEIGEHPLVGDI-RGKGLLVGIELVNDKETKEPIDNDKIASVVNACKE 406 (452)
T ss_dssp HHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHTTCTTEEEE-EESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-EEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHH
Confidence 9999999988763 57889999999998888654 222222 345667777763221111 0112334567777665
Q ss_pred hCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 429 EDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 429 ~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
+||++.+...+... .+..|||+++..+|++|+++++++|++++++
T Consensus 407 -~Gv~~~~~~~~~~~---~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 407 -KGLIIGRNGMTTAG---YNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp -TTEECEECTTSSTT---CCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred -CCcEEeecCcccCC---CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 59999987643210 1245999999999999999999999988753
No 24
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=100.00 E-value=1.3e-37 Score=319.33 Aligned_cols=353 Identities=20% Similarity=0.254 Sum_probs=268.6
Q ss_pred CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (483)
Q Consensus 92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~ 167 (483)
.|.++++++|.++| .||++||||+++ +++|| .+|++.+++.+++++ +... .+..+...+++++|++++
T Consensus 38 ~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~-~~~~v~~a~~~~~~~-~~~~------~~~~~~~~~l~~~la~~~ 109 (434)
T 2epj_A 38 YPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGH-KHPRVLEAVEEALAR-GWLY------GAPGEAEVLLAEKILGYV 109 (434)
T ss_dssp SCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHHT-CSCC------SSCCHHHHHHHHHHHHHH
T ss_pred CCeeEEeeecCEEEECCCCEEEEcccchhcccCCC-CCHHHHHHHHHHHHh-CCCC------CCCCHHHHHHHHHHHHhC
Confidence 47889999999999 799999999987 78999 899999999999987 3321 124578899999999999
Q ss_pred -CCCCEEEecccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhhh-------------cC------CeEEEecCCC
Q 011567 168 -GTPDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYL-------------SR------STVVYFKHND 224 (483)
Q Consensus 168 -g~e~~i~~~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~~-------------s~------~~v~~~~~~d 224 (483)
+.++++++++|++|+..++++ +++++++|+++..||+.....+.. .+ ..++.++++|
T Consensus 110 ~~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d 189 (434)
T 2epj_A 110 KRGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYND 189 (434)
T ss_dssp CTTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCC
Confidence 677788889999999999887 788888999998898754433221 12 2467788899
Q ss_pred HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcccccc
Q 011567 225 MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC 300 (483)
Q Consensus 225 ~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~ 300 (483)
+++|++.+++... ++++|++||+++++|.+.| +++|+++|++||++||+||+|++.+.|. .+..+++
T Consensus 190 ~~~le~~l~~~~~-------~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~--~~~~~~~ 260 (434)
T 2epj_A 190 VEALERVFAEYGD-------RIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGL--EGAQGYF 260 (434)
T ss_dssp HHHHHHHHHHHGG-------GEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSST--THHHHHH
T ss_pred HHHHHHHHHhCCC-------CEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCCc--chhhHHh
Confidence 9999999976422 3789999999999999888 9999999999999999999999433331 2345677
Q ss_pred CCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeec-CCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 011567 301 GVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFS-ASLPPYLASAAITAIDVLEENPDLITKLKKNT 377 (483)
Q Consensus 301 ~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs-~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~ 377 (483)
++.| |++ |++|++|+ ++|++++++++++.++.....+.++ .+.||+.++++.++++.+++ +++.++++++.
T Consensus 261 ~~~~---di~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~-~~~~~~~~~~~ 334 (434)
T 2epj_A 261 NIEG---DII--VLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE-EPVYSVSREAA 334 (434)
T ss_dssp TCCC---SEE--EEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH-SCHHHHHHHHH
T ss_pred CCCC---Cee--eecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHH
Confidence 8766 776 89999985 5689999999988776532222222 25789999999999998876 45889999999
Q ss_pred HHHHHhhccCC---CceeecCCCCCEEEEEecCCC-CCch----hhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCC
Q 011567 378 AILRTGLSDIH---GLSIASNPESPIVFLILEKST-GSMK----NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPV 449 (483)
Q Consensus 378 ~~l~~~L~~~~---~~~i~~~~~~~i~~l~l~~~~-~~~~----~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~ 449 (483)
+++++.|+++. ++.....+.++++++.+.... .... .+.....++.+.+++ +||++.+...
T Consensus 335 ~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~---------- 403 (434)
T 2epj_A 335 KALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLR-RGVFIAPSNL---------- 403 (434)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTT----------
T ss_pred HHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHH-CCeEEeccCC----------
Confidence 99999997641 332212346788898885310 0000 012234567777665 6999986532
Q ss_pred ceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567 450 GIRLFVSAAHSEADLVKACESLKRISAVVL 479 (483)
Q Consensus 450 ~lRi~~~~~~t~edi~~~~~~l~~~~~~~~ 479 (483)
.|+.++..+|++|+++++++|+++++++.
T Consensus 404 -~~~~~~~~~t~e~i~~~l~~l~~~l~~~~ 432 (434)
T 2epj_A 404 -EAVFTGLPHQGEALEIAVEGLRSSLKTVL 432 (434)
T ss_dssp -SCEECCTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred -CcEEEeccCCHHHHHHHHHHHHHHHHHHh
Confidence 24556778999999999999999998764
No 25
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=100.00 E-value=2e-37 Score=317.59 Aligned_cols=351 Identities=20% Similarity=0.249 Sum_probs=263.1
Q ss_pred cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567 91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 166 (483)
Q Consensus 91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~ 166 (483)
..|.++++++|.++| .||++||||+++ +.+|| +||++.+|+.+++++... +....+...+|+++|+++
T Consensus 34 ~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~-------~~~~~~~~~~la~~l~~~ 105 (429)
T 4e77_A 34 GIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGH-NHPAIRQAVIEAVERGLS-------FGAPTEMEVKMAQLVTDL 105 (429)
T ss_dssp SCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHTTCSC-------CSSCCHHHHHHHHHHHHH
T ss_pred CCCceEEEeecCEEEECCCCEEEECCCchhccccCC-CCHHHHHHHHHHHHhCcc-------cCCCCHHHHHHHHHHHhh
Confidence 357889999999999 799999999987 68999 799999999999987422 122457889999999999
Q ss_pred hC-CCCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhh-------------------cCCeEEEecCC
Q 011567 167 LG-TPDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYL-------------------SRSTVVYFKHN 223 (483)
Q Consensus 167 ~g-~e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~-------------------s~~~v~~~~~~ 223 (483)
++ .++++++++|++|+..+++ .+++++++|+++..+|+.+...+.. ....+..++++
T Consensus 106 ~~~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (429)
T 4e77_A 106 VPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYN 185 (429)
T ss_dssp STTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTT
T ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCC
Confidence 85 5567777999999999987 4567888999999999876532211 11245678889
Q ss_pred CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCC-cccc
Q 011567 224 DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGR-GLTE 298 (483)
Q Consensus 224 d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~-g~~~ 298 (483)
|+++|++.+++... ++++|++||+++++|.+.| |++|+++|++||++||+||+|+.. ++|. +..+
T Consensus 186 d~~~le~~l~~~~~-------~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~---r~g~~~~~~ 255 (429)
T 4e77_A 186 DLASVRQAFEQYPQ-------EVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF---RVALAGAQD 255 (429)
T ss_dssp CHHHHHHHHHHSTT-------TEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT---TTBTTCHHH
T ss_pred CHHHHHHHHHhcCC-------CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc---ccCcchHHH
Confidence 99999999976433 3789999999999999998 999999999999999999999853 3343 4457
Q ss_pred ccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecC-CCcHHHHHHHHHHHHHHhcCcHHHHHHHH
Q 011567 299 HCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSA-SLPPYLASAAITAIDVLEENPDLITKLKK 375 (483)
Q Consensus 299 ~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~-~~~p~~~aaa~~al~~l~~~~~~~~~l~~ 375 (483)
++++.| |++ |+||++++ +.|++++++++++.++.....+.+++ +.||+.++++.++++.+++ +++.+++++
T Consensus 256 ~~~~~p---di~--t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~ 329 (429)
T 4e77_A 256 YYHVIP---DLT--CLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ-VGVYETLTE 329 (429)
T ss_dssp HTTCCC---SEE--EEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS-TTHHHHHHH
T ss_pred hcCCCC---Cee--eecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHH
Confidence 888876 776 89999973 45889999999988765432233322 5789999999999998865 458889999
Q ss_pred HHHHHHHhhccC---CCceeecCCCCCEEEEEecCCCCCc------hhhHHHHHHHHHHHHHhCCEEEEeecccccccCC
Q 011567 376 NTAILRTGLSDI---HGLSIASNPESPIVFLILEKSTGSM------KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCR 446 (483)
Q Consensus 376 ~~~~l~~~L~~~---~~~~i~~~~~~~i~~l~l~~~~~~~------~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~ 446 (483)
+.+++++.|.++ .++.....+.+.++++.+....... ..+.....++++.+++ +||++.+...
T Consensus 330 ~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~------- 401 (429)
T 4e77_A 330 LTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLE-EGVYLAPSAF------- 401 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHH-TTEECCSSTT-------
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHH-CCeEEeecCC-------
Confidence 999999888663 1332222346778888886431100 0122344677877665 5999886532
Q ss_pred CCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 447 LPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 447 ~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
-|++++..+|++|+++++++|++++++
T Consensus 402 ----~~~~~~~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 402 ----EAGFMSLAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp ----SCEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred ----CCEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 134557889999999999999988753
No 26
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=100.00 E-value=4.3e-37 Score=315.11 Aligned_cols=373 Identities=17% Similarity=0.220 Sum_probs=274.5
Q ss_pred HHHHHHhhcCCCCCCcccccc--cccCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCC
Q 011567 68 EIDELCDEWVPESLIPPIIEE--MRCEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGV 141 (483)
Q Consensus 68 e~~~l~~~~~~~~~~~~~~~~--~~~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~ 141 (483)
+.-+...+..|.......... ....|.++++++|.++| .||++||||+++ ++||| +||++.+|+.+++++...
T Consensus 9 ~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~ 87 (429)
T 3k28_A 9 AAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGH-ANDRVVEALKAVAERGTS 87 (429)
T ss_dssp HHHHHHTTTSGGGSSSGGGGCGGGTCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCB-SCHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCChhhcccCC-CCHHHHHHHHHHHhhCcC
Confidence 344444455555433222111 13468889999999999 799999999997 78999 899999999999998432
Q ss_pred CCCCCCCcccChHHHHHHHHHHHhhh-CCCCEEEecccHHHHHhhhhhhc---cCCcEEEEcCCchhHHHhHhhhcC---
Q 011567 142 GSCGPRGFYGTIDVHLDCEARIAKFL-GTPDSILYSYGLSTMFSAIPCFC---KKGDLIVADEGVHWGIQNGLYLSR--- 214 (483)
Q Consensus 142 g~~~~~~~~g~~~~~~~l~~~La~~~-g~e~~i~~~sG~~a~~~ai~~~~---~~gdiI~~~~~~h~s~~~g~~~s~--- 214 (483)
++++.+...+|+++|++++ +.++++++++|++|+..+++.+. ++..+|+.+..+|+.+..++...+
T Consensus 88 -------~~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~ 160 (429)
T 3k28_A 88 -------FGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGV 160 (429)
T ss_dssp -------CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC
T ss_pred -------cCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcc
Confidence 2334678899999999998 45667777999999999987764 566678888999977655543332
Q ss_pred ----------------CeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHc
Q 011567 215 ----------------STVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKY 274 (483)
Q Consensus 215 ----------------~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~ 274 (483)
..+..++++|+++|++.+++... ++++|++||+++++|.+.| |++|+++|++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~-------~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 233 (429)
T 3k28_A 161 ATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGD-------DIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQN 233 (429)
T ss_dssp -----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGG-------GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHH
T ss_pred cccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCC-------CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHc
Confidence 14567788999999999976543 3789999999999999998 99999999999
Q ss_pred CcEEEEeCccccccccCCCCc-cccccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCcee-ecCCCcH
Q 011567 275 RFRVFLDESNSFGVLGRSGRG-LTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYV-FSASLPP 350 (483)
Q Consensus 275 ~~~li~DEa~s~g~lg~~G~g-~~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~-fs~~~~p 350 (483)
|++||+||+|+.. ++|.+ ..+++++.| |++ |+||++|+ +.|++++++++++.++.....+. .+.+.+|
T Consensus 234 ~~~li~DEv~~g~---~~g~~~~~~~~~~~~---di~--t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 305 (429)
T 3k28_A 234 GALLIFDEVMTGF---RVAYNCGQGYYGVTP---DLT--CLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNP 305 (429)
T ss_dssp TCEEEEECTTTTT---TSSTTHHHHHHTCCC---SEE--EECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCH
T ss_pred CCEEEEecccccc---ccCcchHHHHhCCCC---cee--hhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccCCCCCCh
Confidence 9999999999753 44543 357788876 776 79999973 34889999999988754322222 2335689
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCc-----hhhHHHHHH
Q 011567 351 YLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSM-----KNDLQLLED 421 (483)
Q Consensus 351 ~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~-----~~~~~~~~~ 421 (483)
++++++.++++.++ +++.++++++.+++++.|+++ +.+... .+.+.++.+.+....... ..+.....+
T Consensus 306 ~a~aaa~aal~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (429)
T 3k28_A 306 LAMAAGYETLVQLT--PESYVEFERKAEMLEAGLRKAAEKHGIPHHI-NRAGSMIGIFFTDEPVINYDAAKSSNLQFFAA 382 (429)
T ss_dssp HHHHHHHHHHHTCC--HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEE-EEETTEEEEESSSSCCCSHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEE-EeeccEEEEEEecCCcccccccccccHHHHHH
Confidence 99999999998775 568899999999999988764 222111 345778888775322110 012234567
Q ss_pred HHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 422 IADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 422 i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
+++.+++ +||++.+... ..+|+ +..+|++|+++++++|+++++++
T Consensus 383 ~~~~l~~-~Gv~v~~~~~---------~~~r~--~~~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 383 YYREMVE-QGVFLPPSQF---------EGLFL--STVHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp HHHHHHH-TTEECCSSTT---------SCBCC--CTTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHH-CCeEEecCCC---------CCEEE--ECCCCHHHHHHHHHHHHHHHHHH
Confidence 7777665 5999876422 22666 56899999999999999988653
No 27
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=100.00 E-value=5.4e-37 Score=314.06 Aligned_cols=351 Identities=18% Similarity=0.239 Sum_probs=267.0
Q ss_pred cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567 91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 166 (483)
Q Consensus 91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~ 166 (483)
..|.++++++|.++| .||++||||+++ +.+|| ++|++.+|+.+++++... +....+...+++++|+++
T Consensus 33 ~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~-------~~~~~~~~~~la~~l~~~ 104 (427)
T 3fq8_A 33 GQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGH-AHPEVIEALKVAMEKGTS-------FGAPCALENVLAEMVNDA 104 (427)
T ss_dssp SCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHTTCSC-------CSSCCHHHHHHHHHHHHH
T ss_pred CCCceEEEeeeCEEEECCCCEEEECCCchhhhccCC-CCHHHHHHHHHHHHhCCC-------cCCCCHHHHHHHHHHHHh
Confidence 457889999999999 799999999998 78999 899999999999987422 112467889999999999
Q ss_pred hC-CCCEEEecccHHHHHhhh---hhhccCCcEEEEcCCchhHHHhHhhhcC-------------------CeEEEecCC
Q 011567 167 LG-TPDSILYSYGLSTMFSAI---PCFCKKGDLIVADEGVHWGIQNGLYLSR-------------------STVVYFKHN 223 (483)
Q Consensus 167 ~g-~e~~i~~~sG~~a~~~ai---~~~~~~gdiI~~~~~~h~s~~~g~~~s~-------------------~~v~~~~~~ 223 (483)
++ .++++++++|++|+..++ +.+++++++|+.+..+|+.+.......+ ..+..++++
T Consensus 105 ~~~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (427)
T 3fq8_A 105 VPSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN 184 (427)
T ss_dssp STTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT
T ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC
Confidence 95 456667799999999998 5567888899999999976543332221 236778899
Q ss_pred CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCC-cccc
Q 011567 224 DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGR-GLTE 298 (483)
Q Consensus 224 d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~-g~~~ 298 (483)
|+++|++.+++... ++++|+++|+++++|.+.| +++|+++|++||++||+||+|+.. ++|. +..+
T Consensus 185 d~~~le~~l~~~~~-------~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~---~~g~~~~~~ 254 (427)
T 3fq8_A 185 DLEAVKALFAENPG-------EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF---RIAYGGVQE 254 (427)
T ss_dssp CHHHHHHHHHHSTT-------TEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT---TTBTTHHHH
T ss_pred CHHHHHHHHHhCCC-------CEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc---ccCcchhhH
Confidence 99999999976433 3899999999999999999 999999999999999999999843 3444 3457
Q ss_pred ccCCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCcee-ecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHH
Q 011567 299 HCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYV-FSASLPPYLASAAITAIDVLEENPDLITKLKK 375 (483)
Q Consensus 299 ~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~-fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~ 375 (483)
++++.| |++ |+||++++ +.|++++++++++.++.....+. .+.+.+|++++++.++++.+++ +++.+++++
T Consensus 255 ~~~~~~---di~--t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~-~~~~~~~~~ 328 (427)
T 3fq8_A 255 KFGVTP---DLT--TLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ-PGTYEYLDQ 328 (427)
T ss_dssp HTTCCC---SEE--EECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHHHHH
T ss_pred hcCCCC---Chh--hhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHH
Confidence 788876 775 88999973 35889999999988764321111 1224689999999999998876 458899999
Q ss_pred HHHHHHHhhccCC---CceeecCCCCCEEEEEecCCCCC-----chhhHHHHHHHHHHHHHhCCEEEEeecccccccCCC
Q 011567 376 NTAILRTGLSDIH---GLSIASNPESPIVFLILEKSTGS-----MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRL 447 (483)
Q Consensus 376 ~~~~l~~~L~~~~---~~~i~~~~~~~i~~l~l~~~~~~-----~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~ 447 (483)
+.+++++.|.++. ++.....+.+.++++.+...... ...+.....++++.+++ +||++.+...
T Consensus 329 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~~-------- 399 (427)
T 3fq8_A 329 ITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYLAPSQF-------- 399 (427)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTT--------
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHH-CCcEEecCCC--------
Confidence 9999998887631 22222234577888887542111 01122335567777665 5999976532
Q ss_pred CCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 448 PVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 448 ~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
-|++++..+|++|+++++++|++++++
T Consensus 400 ---~r~~~~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 400 ---EAGFTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp ---SCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence 267788899999999999999998865
No 28
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=100.00 E-value=6e-37 Score=310.38 Aligned_cols=342 Identities=18% Similarity=0.218 Sum_probs=266.2
Q ss_pred cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567 91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 166 (483)
Q Consensus 91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~ 166 (483)
..|.++++++|.+++ .||++||||+++ +++|| ++|++.+++.+++++++.++. .++.+.+.+++++++++
T Consensus 17 ~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~la~~ 90 (395)
T 3nx3_A 17 RFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGY-NHAKFNAKIKAQVDKLLHTSN-----LYYNENIAAAAKNLAKA 90 (395)
T ss_dssp SCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCB-SCHHHHHHHHHHHTTCSCCCT-----TSBCHHHHHHHHHHHHH
T ss_pred CCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCC-CCHHHHHHHHHHHHhcccccc-----ccCCHHHHHHHHHHHHh
Confidence 347788999999999 799999999998 88999 899999999999988654321 13467899999999999
Q ss_pred hCCCCEEEecccHHHHHhhhhhhc--------cCCcEEEEcCCchhHHHhHhhhcC------------CeEEEecCCCHH
Q 011567 167 LGTPDSILYSYGLSTMFSAIPCFC--------KKGDLIVADEGVHWGIQNGLYLSR------------STVVYFKHNDMD 226 (483)
Q Consensus 167 ~g~e~~i~~~sG~~a~~~ai~~~~--------~~gdiI~~~~~~h~s~~~g~~~s~------------~~v~~~~~~d~~ 226 (483)
+|.++++++++|++|+..+++++. ++.++|+.+..+|+....++.+++ ..+..++++|++
T Consensus 91 ~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 170 (395)
T 3nx3_A 91 SALERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDIS 170 (395)
T ss_dssp HTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTCHH
T ss_pred cCCCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCCHH
Confidence 998888888999999999988763 345677778888877665555443 467788899999
Q ss_pred HHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccC
Q 011567 227 SLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCG 301 (483)
Q Consensus 227 ~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~ 301 (483)
+|++.++. .+++|+++++++++|.+.| +++|+++|++||++||+||+|+. +|++|... .++++
T Consensus 171 ~l~~~l~~----------~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~--~g~~g~~~~~~~~~ 238 (395)
T 3nx3_A 171 SVEKLVNE----------KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCG--MGRSGKFFAYEHAQ 238 (395)
T ss_dssp HHHTTCCT----------TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTT--TTTTSSSSGGGGGT
T ss_pred HHHHhccC----------CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccC--CCcCCcchhHHhcC
Confidence 99887742 3789999999999999988 99999999999999999999974 34555433 46777
Q ss_pred CCCCceeEEEccccccccC--CCceeeccHHH-HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 011567 302 VPVDKIDIVTAAMGHALAT--EGGFCTGSARV-VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTA 378 (483)
Q Consensus 302 v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~-~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~ 378 (483)
+.+ |++ |+||+++. +.|++++++++ ++.++....+.+| +.+|+.++++.++++.+++. +..++++++.+
T Consensus 239 ~~~---d~~--t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~aa~aal~~~~~~-~~~~~~~~~~~ 310 (395)
T 3nx3_A 239 ILP---DIM--TSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTY--GGNPLVCAGVNAVFEIFKEE-KILENVNKLTP 310 (395)
T ss_dssp CCC---SEE--EECGGGTTTSCCEEEEECHHHHHHHSCTTCCSSCB--SCCHHHHHHHHHHHHHHHHT-THHHHHHHHHH
T ss_pred CCC---CEE--EecccccCCCceEEEEEchhhhhhhcCCcccCCCC--CCCHHHHHHHHHHHHHHHhh-HHHHHHHHHHH
Confidence 765 776 78999973 34889999998 8877654444444 45899999999999988653 47888888888
Q ss_pred HHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEE
Q 011567 379 ILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLF 454 (483)
Q Consensus 379 ~l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~ 454 (483)
++++.|.++ +.+... .+.++++++.+.... ...++++.+++ +||++.+.. +..+||+
T Consensus 311 ~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~--------~~~~~~~~l~~-~Gi~v~~~~---------~~~iRi~ 371 (395)
T 3nx3_A 311 YLEQSLDELINEFDFCKKR-KGLGFMQGLSLDKSV--------KVAKVIQKCQE-NALLLISCG---------ENDLRFL 371 (395)
T ss_dssp HHHHHHHHHHHHCTTEEEE-EEETTEEEEEECTTS--------CHHHHHHHHHH-TTEECEEET---------TTEEEEC
T ss_pred HHHHHHHHHHHhCCCeEEE-EeEEEEEEEEeCCcc--------hHHHHHHHHHH-CCCEEecCC---------CCEEEEE
Confidence 888877653 323222 335778888885421 13356776554 599998753 2349999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHH
Q 011567 455 VSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 455 ~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
++..+|++|+++++++|++++++
T Consensus 372 ~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 372 PPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998753
No 29
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=100.00 E-value=6.7e-37 Score=313.68 Aligned_cols=365 Identities=19% Similarity=0.176 Sum_probs=254.9
Q ss_pred cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567 91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 166 (483)
Q Consensus 91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~ 166 (483)
..|+++++++|.+++ .+|++||||+++ +++|| ++|++++++.+++++.+..+. ..+..+...+++++|+++
T Consensus 10 ~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~----~~~~~~~~~~l~~~la~~ 84 (430)
T 3i4j_A 10 KPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGH-GRAEVGERMAAQAARLPFVHG----SQFSSDVLEEYAGRLARF 84 (430)
T ss_dssp SCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHHHCCCCCT----TTCEEHHHHHHHHHHHHH
T ss_pred CCCceEEeeecCEEEECCCCEEEECCCchhccccCC-CCHHHHHHHHHHHHhcccccc----cccCCHHHHHHHHHHHHh
Confidence 347789999999999 799999999996 89999 699999999999988543221 234567899999999999
Q ss_pred hCC--CCEEEecccHHHHHhhhhhhc---------cCCcEEEEcCCchhHHHhHhhhcCC--------------eEEEec
Q 011567 167 LGT--PDSILYSYGLSTMFSAIPCFC---------KKGDLIVADEGVHWGIQNGLYLSRS--------------TVVYFK 221 (483)
Q Consensus 167 ~g~--e~~i~~~sG~~a~~~ai~~~~---------~~gdiI~~~~~~h~s~~~g~~~s~~--------------~v~~~~ 221 (483)
++. ++++++++|++|+..+++++. ++.++|+.+..+|+....+..+.+. .+..++
T Consensus 85 ~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (430)
T 3i4j_A 85 VGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLP 164 (430)
T ss_dssp TTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEEC
T ss_pred CCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcC
Confidence 963 567777999999999998874 3445777788888776555444432 333444
Q ss_pred CC--------CHHHHHHHHHHhhhhhhhccCccEEEEEecccC-CCCCccC----hHHHHHHHHHcCcEEEEeCcccccc
Q 011567 222 HN--------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ-NSGQIAP----LDELIRLKEKYRFRVFLDESNSFGV 288 (483)
Q Consensus 222 ~~--------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~-~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~ 288 (483)
++ |+++||+.+++...+ ++++|++||+++ ++|.+.+ |++|+++|++||++||+||+|+.
T Consensus 165 ~~~~~~~~~~~~~~le~~l~~~~~~------~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~-- 236 (430)
T 3i4j_A 165 KPDPARNGAEDAEGLRALLEREGPE------TVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSG-- 236 (430)
T ss_dssp CCCTTSCHHHHHTHHHHHHHHHCGG------GEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTT--
T ss_pred CCcccchhhHHHHHHHHHHHhcCCC------CEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhC--
Confidence 44 448899888764321 478999999999 9998887 99999999999999999999984
Q ss_pred ccCCCCc-ccccc-CCCCCceeEEEccccccccCCC----ceeeccHHHHHHHHhcCCce--eecCCCcHHHHHHHHHHH
Q 011567 289 LGRSGRG-LTEHC-GVPVDKIDIVTAAMGHALATEG----GFCTGSARVVDHQRLSSSGY--VFSASLPPYLASAAITAI 360 (483)
Q Consensus 289 lg~~G~g-~~~~~-~v~~~~~Di~~~s~~K~lg~~G----G~i~~~~~~~~~~~~~~~~~--~fs~~~~p~~~aaa~~al 360 (483)
+|++|.. ..+++ ++.| |++ |+||++++ | |++++++++++.++.....+ ..+.+.+|++++++.++|
T Consensus 237 ~~~~g~~~~~~~~~~~~~---di~--t~sK~l~~-G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal 310 (430)
T 3i4j_A 237 MGRCGSPLALSRWSGVTP---DIA--VLGKGLAA-GYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVL 310 (430)
T ss_dssp TTTTSSSSGGGGTTTCCC---SEE--EECGGGTT-TSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHH
T ss_pred CCcccchhhhhhhcCCCC---cEE--EEcccccC-CccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHH
Confidence 3445543 35777 8766 776 68999984 5 78999999999887642211 122356899999999999
Q ss_pred HHHhcCcHHHHHHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhh-HHHHHHHHHHHHHhCCEEEE
Q 011567 361 DVLEENPDLITKLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKND-LQLLEDIADWALKEDGVFVV 435 (483)
Q Consensus 361 ~~l~~~~~~~~~l~~~~~~l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~~~~-~~~~~~i~~~~l~~~Gv~v~ 435 (483)
+.+++ +++.++++++.+++++.|.++ +++... .+.+.++.+.+.+.......+ .....++++.+++ +||++.
T Consensus 311 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~ 387 (430)
T 3i4j_A 311 DIVER-EDLTGAAKERGAQLLAGLQALQARFPQMMQV-RGTGLLLGVVLGDLATGQAFETPGIASRIGAAALK-RGLITY 387 (430)
T ss_dssp HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEC------------CHHHHHHHHHH-TTEECC
T ss_pred HHHHc-ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEeccccccCCCccHHHHHHHHHHHHh-CCCEEE
Confidence 98876 347888888888888877653 344333 345778888875321100000 1123567777665 599998
Q ss_pred eecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567 436 TSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 479 (483)
Q Consensus 436 ~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~ 479 (483)
+..++..+.. +..+||++++.+|++++++++++|++++++++
T Consensus 388 ~~~~~~~~~~--~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 429 (430)
T 3i4j_A 388 PGSGAEPNGR--GDHLLLGPPLSITAAEVDGLLALLAGALEDVL 429 (430)
T ss_dssp -------------CEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred ecccccCCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 7633221110 23499999999999999999999999998764
No 30
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=100.00 E-value=5.2e-37 Score=313.58 Aligned_cols=345 Identities=18% Similarity=0.180 Sum_probs=267.2
Q ss_pred CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (483)
Q Consensus 92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~ 167 (483)
.|.++++++|.++| .+|++||||+++ +++|+ .+|++.+++.++++++...+ +. +..+...+++++|++++
T Consensus 39 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~ai~~~~~~~~~~~---~~--~~~~~~~~l~~~la~~~ 112 (420)
T 2pb2_A 39 ADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGH-CHPALVEALKSQGETLWHTS---NV--FTNEPALRLGRKLIDAT 112 (420)
T ss_dssp CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCCCCC---TT--SCCHHHHHHHHHHHHHS
T ss_pred CCceEEeeecCEEEECCCCEEEEccccccccccCC-CCHHHHHHHHHHHHhccccc---Cc--cCCHHHHHHHHHHHhhC
Confidence 46788999999999 799999999998 89999 89999999999998865432 11 24578899999999999
Q ss_pred CCCCEEEecccHHHHHhhhhhhcc-------CC--cEEEEcCCchhHHHhHhhhcCCe------------EEEecCCCHH
Q 011567 168 GTPDSILYSYGLSTMFSAIPCFCK-------KG--DLIVADEGVHWGIQNGLYLSRST------------VVYFKHNDMD 226 (483)
Q Consensus 168 g~e~~i~~~sG~~a~~~ai~~~~~-------~g--diI~~~~~~h~s~~~g~~~s~~~------------v~~~~~~d~~ 226 (483)
|.++++++++|++|+..+++++.. +| ++|+.+..+|+.+..++.+.+.+ +..++++|++
T Consensus 113 g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~ 192 (420)
T 2pb2_A 113 FAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLH 192 (420)
T ss_dssp SCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTCHH
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCCHH
Confidence 988888889999999999988753 33 57777888998877766666543 6778888999
Q ss_pred HHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc----cChHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccC
Q 011567 227 SLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI----APLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCG 301 (483)
Q Consensus 227 ~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i----~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~ 301 (483)
+|++.+++ ++++|+++++++++|.+ .++++|+++|++||++||+||+|++ +|++|+++ .++++
T Consensus 193 ~le~~i~~----------~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g--~~~~g~~~~~~~~~ 260 (420)
T 2pb2_A 193 AVKAVMDD----------HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCG--MGRTGDLFAYMHYG 260 (420)
T ss_dssp HHHHHCCT----------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTT--TTTTSSSSHHHHHT
T ss_pred HHHHHhcc----------CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcC--cccCCcHHHHHhcC
Confidence 99887752 37899999998877753 3489999999999999999999963 56777665 36777
Q ss_pred CCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 011567 302 VPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAI 379 (483)
Q Consensus 302 v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~ 379 (483)
+.| |++ |++|++++ +.|++++++++++.++....+.+| +.||+.++++.++|+.+++ +++.++++++.++
T Consensus 261 ~~~---dii--t~sK~l~~G~~iG~~~~~~~l~~~l~~~~~~~t~--~~~~~~~aa~~a~L~~~~~-~~~~~~~~~~~~~ 332 (420)
T 2pb2_A 261 VTP---DIL--TSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTY--GGNPLACAVAGAAFDIINT-PEVLQGIHTKRQQ 332 (420)
T ss_dssp CCC---SEE--EECGGGGTTSCCEEEEECHHHHTTCC----CCEE--CCCHHHHHHHHHHHHHHSS-HHHHHHHHHHHHH
T ss_pred CCC---CeE--EecccccCCCceEEEEEhHHHHHhhcCCCcCccc--CcCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 766 777 78999983 247888888888776543344455 4589999999999998876 5688999999999
Q ss_pred HHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc
Q 011567 380 LRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV 455 (483)
Q Consensus 380 l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~ 455 (483)
+++.|+++ +.+... .+.+.++++.+..... ....++.+.+++ +||++.+.. +..+|+++
T Consensus 333 l~~~L~~~~~~~~~~~~~-~~~g~~~~v~~~~~~~------~~~~~l~~~l~~-~Gi~v~~~~---------~~~iRl~~ 395 (420)
T 2pb2_A 333 FVQHLQAIDEQFDIFSDI-RGMGLLIGAELKPKYK------GRARDFLYAGAE-AGVMVLNAG---------ADVMRFAP 395 (420)
T ss_dssp HHHHHHHHHHHHCCEEEE-EEETTEEEEEECGGGT------TCHHHHHHHHHH-TTEECEESS---------TTEEEECC
T ss_pred HHHHHHHHHhcCCCeEEE-EecceEEEEEECCCch------HHHHHHHHHHHH-CCCEEEeCC---------CCEEEEEC
Confidence 99999764 222212 2357888888753210 013457776665 699998752 23499999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHH
Q 011567 456 SAAHSEADLVKACESLKRISAVVL 479 (483)
Q Consensus 456 ~~~~t~edi~~~~~~l~~~~~~~~ 479 (483)
+..+|++|+++++++|++++++++
T Consensus 396 ~~~~t~eei~~~~~~l~~~l~~~~ 419 (420)
T 2pb2_A 396 SLVVEEADIHEGMQRFAQAVGKVV 419 (420)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 31
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=1.8e-36 Score=309.96 Aligned_cols=348 Identities=22% Similarity=0.308 Sum_probs=263.3
Q ss_pred CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (483)
Q Consensus 92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~ 167 (483)
.|.++++++|.++| .||++||||+++ +++|| .+|++.+|+.+++++ +.+. .+..+...++++.|++++
T Consensus 34 ~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~-~~~~------~~~~~~~~~l~~~l~~~~ 105 (424)
T 2e7u_A 34 TPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGH-AHPKVLARVRETLER-GLTF------GAPSPLEVALAKKVKRAY 105 (424)
T ss_dssp CCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHHT-CSCC------SSCCHHHHHHHHHHHHHC
T ss_pred CCeeEEeeecCEEEeCCCCEEEEccccccccccCC-CCHHHHHHHHHHHHh-CCCC------CCCCHHHHHHHHHHHHhC
Confidence 37788999999999 799999999987 78999 899999999999987 3321 134578899999999999
Q ss_pred -CCCCEEEecccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhhh-------------cC------CeEEEecCCC
Q 011567 168 -GTPDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYL-------------SR------STVVYFKHND 224 (483)
Q Consensus 168 -g~e~~i~~~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~~-------------s~------~~v~~~~~~d 224 (483)
+.++++++++|++|+..++++ +++++++|+.+..||+.....+.. .+ ..++.++++|
T Consensus 106 ~~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d 185 (424)
T 2e7u_A 106 PFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYND 185 (424)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCC
Confidence 566777889999999999885 888888999998999754433321 12 2467788899
Q ss_pred HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcccccc
Q 011567 225 MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC 300 (483)
Q Consensus 225 ~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~ 300 (483)
+++|++.+++... ++++|++||+++++|.+.| +++|+++ ++||++||+||+|++.+.|. .+..+++
T Consensus 186 ~~~le~~l~~~~~-------~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~--~~~~~~~ 255 (424)
T 2e7u_A 186 PEGLREVLKRRGE-------EIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAF--GGATELL 255 (424)
T ss_dssp HHHHHHHHHHHGG-------GEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSST--THHHHHH
T ss_pred HHHHHHHHHhCCC-------CEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccch--hHHHHHh
Confidence 9999999875322 3789999999998998887 9999999 99999999999998433331 2345678
Q ss_pred CCCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecC-CCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 011567 301 GVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSA-SLPPYLASAAITAIDVLEENPDLITKLKKNT 377 (483)
Q Consensus 301 ~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~-~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~ 377 (483)
++.| |++ |++|++|+ ++|++++++++++.++.....+.+++ +.||+.++++.++++.+++.+++.+++++++
T Consensus 256 ~~~~---di~--s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~ 330 (424)
T 2e7u_A 256 GLKP---DLV--TLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLG 330 (424)
T ss_dssp TCCC---SEE--EECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHH
T ss_pred CCCc---chh--hhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 8776 776 89999984 56889999999988765322222222 5689999999999998876456899999999
Q ss_pred HHHHHhhccC---CCceeecCCCCCEEEEEecCCC-CCch----hhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCC
Q 011567 378 AILRTGLSDI---HGLSIASNPESPIVFLILEKST-GSMK----NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPV 449 (483)
Q Consensus 378 ~~l~~~L~~~---~~~~i~~~~~~~i~~l~l~~~~-~~~~----~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~ 449 (483)
+++++.|+++ .++.....+.++++++.+.... .... .+.....++.+.++ ++||++.+...
T Consensus 331 ~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~---------- 399 (424)
T 2e7u_A 331 ARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIYWPPSNF---------- 399 (424)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEECCSSSS----------
T ss_pred HHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-HCCeEEeccCC----------
Confidence 9999999764 1332111345778888885311 0000 01233556777766 56999986532
Q ss_pred ceEEEccCCCCHHHHHHHHHHHHHH
Q 011567 450 GIRLFVSAAHSEADLVKACESLKRI 474 (483)
Q Consensus 450 ~lRi~~~~~~t~edi~~~~~~l~~~ 474 (483)
.|+.++..+|++|+++++++|+++
T Consensus 400 -~~~~~~~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 400 -EAAFLSVAHREEDVEKTLEALRKA 423 (424)
T ss_dssp -SCEECCTTCCHHHHHHHHHHHHHH
T ss_pred -CceEeeccCCHHHHHHHHHHHHHh
Confidence 235567889999999999999876
No 32
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=100.00 E-value=1.6e-37 Score=321.86 Aligned_cols=349 Identities=16% Similarity=0.175 Sum_probs=253.2
Q ss_pred CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (483)
Q Consensus 92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~ 167 (483)
.+.++++++|.++| .||++||||+++ +.+|| +||+|.+|+.+++.+++.+.....+.....++..+++++|++++
T Consensus 45 ~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh-~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~ 123 (472)
T 1ohv_A 45 FFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGY-SHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVA 123 (472)
T ss_dssp CCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCB-TCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGC
T ss_pred CCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCC-CCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhC
Confidence 35678999999999 899999999987 56899 89999999999876532211111011123456677777777777
Q ss_pred --CCCCEEEecccHHHHHhhhhhhc---------------------------c--CCcEEEEcCCchhHHHhHhhhcCCe
Q 011567 168 --GTPDSILYSYGLSTMFSAIPCFC---------------------------K--KGDLIVADEGVHWGIQNGLYLSRST 216 (483)
Q Consensus 168 --g~e~~i~~~sG~~a~~~ai~~~~---------------------------~--~gdiI~~~~~~h~s~~~g~~~s~~~ 216 (483)
+.+++++++||++|++.|+++.. + +.++|.++..||+.+..++.+++..
T Consensus 124 ~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~ 203 (472)
T 1ohv_A 124 PKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSK 203 (472)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSC
T ss_pred CCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCc
Confidence 45678888999999999998762 2 3568888999999888877776532
Q ss_pred E-------------EEec-----------CC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---
Q 011567 217 V-------------VYFK-----------HN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP--- 263 (483)
Q Consensus 217 v-------------~~~~-----------~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~--- 263 (483)
. ..++ +| |+++|++.+++.... ..++++|++|++++++|.+.|
T Consensus 204 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~----~~~~~~vive~v~~~~G~~~~~~~ 279 (472)
T 1ohv_A 204 AIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKK----KKTVAGIIVEPIQSEGGDNHASDD 279 (472)
T ss_dssp HHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHT----TCCEEEEEECSSBCTTTCBCCCHH
T ss_pred cccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCC----CCCEEEEEEcCCcCCCCCCCCCHH
Confidence 1 1221 22 567777777653220 013789999999999999887
Q ss_pred -hHHHHHHHHHcCcEEEEeCccccccccCCCCc-cccccCCCCCceeEEEcccccc-ccCCCceeeccHHHHHHHHhcCC
Q 011567 264 -LDELIRLKEKYRFRVFLDESNSFGVLGRSGRG-LTEHCGVPVDKIDIVTAAMGHA-LATEGGFCTGSARVVDHQRLSSS 340 (483)
Q Consensus 264 -L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g-~~~~~~v~~~~~Di~~~s~~K~-lg~~GG~i~~~~~~~~~~~~~~~ 340 (483)
|++|+++|++||++||+||+|++ +|++|.+ ..+++|+. ..+|++ ||||+ +| |||++ ++++. .+..
T Consensus 280 ~l~~l~~l~~~~g~lli~DEv~~g--~g~~g~~~~~~~~gv~-~~~Di~--t~sK~~l~--GG~~~-~~~~~-~~~~--- 347 (472)
T 1ohv_A 280 FFRKLRDISRKHGCAFLVDEVQTG--GGSTGKFWAHEHWGLD-DPADVM--TFSKKMMT--GGFFH-KEEFR-PNAP--- 347 (472)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTT--TTTTSSSSGGGGGCCS-SCCSEE--EECGGGSS--EEEEE-CGGGS-CSSS---
T ss_pred HHHHHHHHHHHhCCEEEEeCcccC--CCCCCCchhccccCCC-CCCCEE--EEcccccc--CCccC-chhhc-cccc---
Confidence 99999999999999999999984 5666664 45777875 123886 89999 56 89987 65552 1111
Q ss_pred ceeecC-CCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC----CC-ceeecCCCCCEEEEEecCCCCCchh
Q 011567 341 GYVFSA-SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI----HG-LSIASNPESPIVFLILEKSTGSMKN 414 (483)
Q Consensus 341 ~~~fs~-~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~----~~-~~i~~~~~~~i~~l~l~~~~~~~~~ 414 (483)
...+++ +.||+.++++.++|+.+++. ++.++++++++++++.|+++ ++ +... .+.+.++.+.+.+
T Consensus 348 ~~~~~T~~~~~~~~aaa~aal~~~~~~-~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~-~~~g~~~~~~~~~------- 418 (472)
T 1ohv_A 348 YRIFNTWLGDPSKNLLLAEVINIIKRE-DLLSNAAHAGKVLLTGLLDLQARYPQFISRV-RGRGTFCSFDTPD------- 418 (472)
T ss_dssp SSSCCSSSSCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHHCTTTCEEE-EEETTEEEEECSS-------
T ss_pred ccccCccCccHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHhhCCCcEEee-cCCceEEEEEeCC-------
Confidence 222222 46899999999999988764 48899999999999998764 22 2212 2357788877632
Q ss_pred hHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 415 DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 415 ~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
.....+++..+++ +||++.+.. ...||++++..+|++||++++++|++++++
T Consensus 419 -~~~~~~~~~~l~~-~Gv~~~~~g---------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 419 -ESIRNKLISIARN-KGVMLGGCG---------DKSIRFRPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp -HHHHHHHHHHHHH-TTEECEEET---------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred -hhHHHHHHHHHHH-CCeEEecCC---------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 1234567887775 599998742 134999999999999999999999998764
No 33
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=100.00 E-value=9.3e-39 Score=348.74 Aligned_cols=360 Identities=14% Similarity=0.087 Sum_probs=255.2
Q ss_pred CCCccccCCCC--eEE-ECCe----eEEEeecC---CCCCCCC-ChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHH
Q 011567 92 EPPVLESAAGP--HTI-ISGK----EVVNFASA---NYLGLIG-HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCE 160 (483)
Q Consensus 92 ~~~~i~~~~g~--~~~-~~G~----~~id~~s~---~~lG~~~-~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~ 160 (483)
.|.+|++++|. |+| .||+ +|||++++ +.+|| + ||+|.+|+.+|+++++..+. ...+++...+|+
T Consensus 356 ~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh-~~~p~i~~Ai~~Q~~~l~h~~~----~~~~~~~~~~La 430 (831)
T 4a0g_A 356 TVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDP-TFQAELAREMGYTAARFGHVMF----PENVYEPALKCA 430 (831)
T ss_dssp GCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCH-HHHHHHHHHHHHHHHHHSSCCC----TTEECHHHHHHH
T ss_pred CCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCC-CCCHHHHHHHHHHHhhcccccc----cccCCHHHHHHH
Confidence 46789999896 777 6898 99999996 88999 7 99999999999999865321 123568899999
Q ss_pred HHHHhhhC---CCCEEEecccHHHHHhhhhhh----c--------------cCCcEEEEcCCchhHHHhHhhhcCCeE--
Q 011567 161 ARIAKFLG---TPDSILYSYGLSTMFSAIPCF----C--------------KKGDLIVADEGVHWGIQNGLYLSRSTV-- 217 (483)
Q Consensus 161 ~~La~~~g---~e~~i~~~sG~~a~~~ai~~~----~--------------~~gdiI~~~~~~h~s~~~g~~~s~~~v-- 217 (483)
++|+++++ .+.+++++||++||+.|++.. + +|.++|..+..||+.+..++.+++...
T Consensus 431 e~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~ 510 (831)
T 4a0g_A 431 ELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYT 510 (831)
T ss_dssp HHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGG
T ss_pred HHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccc
Confidence 99999998 457788899999999998764 1 355789999999999998888765310
Q ss_pred ----------------------------EEec------------CCCH------------------HHHHHHHHHhhhhh
Q 011567 218 ----------------------------VYFK------------HNDM------------------DSLRNTLERVTADN 239 (483)
Q Consensus 218 ----------------------------~~~~------------~~d~------------------~~Le~~l~~~~~~~ 239 (483)
+.++ ++|. ++||+.|++...
T Consensus 511 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~-- 588 (831)
T 4a0g_A 511 GFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSG-- 588 (831)
T ss_dssp STTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC-------
T ss_pred cccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhh--
Confidence 0111 2332 345555543110
Q ss_pred hhccCccEEEEEecc-cCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccCCCCCceeEEEcc
Q 011567 240 KRAKKLRRYIVVEAV-YQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAA 313 (483)
Q Consensus 240 ~~~~~~~~~iv~e~v-~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s 313 (483)
...+.++++|++||+ ++.+|.+.| |++|+++|++||++||+||++++ +|++|+++ ++++|+.| ||+ |
T Consensus 589 ~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tG--fGRtG~~fa~e~~gv~P---Dii--t 661 (831)
T 4a0g_A 589 VRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTG--FWRLGVETTTELLGCKP---DIA--C 661 (831)
T ss_dssp ----CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTT--TTTTSBSSTHHHHSSCC---SEE--E
T ss_pred hcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccc--cccCCCchhhHhcCCCC---cEE--E
Confidence 001235899999997 788887775 99999999999999999999974 56666654 58999988 887 7
Q ss_pred ccccccCC---CceeeccHHHHHHHHhcC----CceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-------
Q 011567 314 MGHALATE---GGFCTGSARVVDHQRLSS----SGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAI------- 379 (483)
Q Consensus 314 ~~K~lg~~---GG~i~~~~~~~~~~~~~~----~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~------- 379 (483)
++|++++. -|++++++++++.+.... ..+.++.+.||++|++++++|+++++++ +.++++++.++
T Consensus 662 lsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~-l~~~~~~~~~~l~~~l~~ 740 (831)
T 4a0g_A 662 FAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPE-TNHNITSQGKTLRELWDE 740 (831)
T ss_dssp ECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTT-TCTTBCTTSSBBCCCSCH
T ss_pred EecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHH
Confidence 99999741 166889999999876432 1123344569999999999999997643 44444433332
Q ss_pred -HHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCC
Q 011567 380 -LRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAA 458 (483)
Q Consensus 380 -l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~ 458 (483)
+.+.+.+.+.+.-. .+.+.++.+.+..+......+.....+++..+++ +||++.+.. ..||+++++.
T Consensus 741 ~l~~~l~~~~~v~~v-rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e-~Gv~v~p~g----------~~lrl~pp~~ 808 (831)
T 4a0g_A 741 ELVQQISSHSAVQRV-VVIGTLFALELKADASNSGYASLYAKSLLIMLRE-DGIFTRPLG----------NVIYLMCGPC 808 (831)
T ss_dssp HHHHHHHHSTTEEEE-EEETTEEEEEEC---------CHHHHHHHHHHHH-TTEECCCBT----------TEEEEECCTT
T ss_pred HHHHHHhhCCCceeE-eecccEEEEEEecCccccccchHHHHHHHHHHHH-CCcEEEecC----------CEEEEECCCC
Confidence 33344444443322 2467888888754211111122345677877665 599997642 3499999999
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 011567 459 HSEADLVKACESLKRISAVV 478 (483)
Q Consensus 459 ~t~edi~~~~~~l~~~~~~~ 478 (483)
+|++||++++++|+++++++
T Consensus 809 ~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 809 TSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp CCHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987653
No 34
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=100.00 E-value=1.7e-40 Score=340.65 Aligned_cols=347 Identities=17% Similarity=0.183 Sum_probs=267.5
Q ss_pred CCCccccCCCCeEE-ECCeeEEEeecCC---CCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567 92 EPPVLESAAGPHTI-ISGKEVVNFASAN---YLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (483)
Q Consensus 92 ~~~~i~~~~g~~~~-~~G~~~id~~s~~---~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~ 167 (483)
.|.++++++|.++| +|||+||||+++. .+|| +||+|.+|+.+++++ +.+ +.+..+...+|+++|++++
T Consensus 82 ~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh-~~p~V~~Av~~q~~~-~~~------~~~~~~~~~~Lae~L~~~~ 153 (465)
T 2yky_A 82 FPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGH-SHPVIRAAVERALAV-GLN------LSTQTENEALFAEAVCDRF 153 (465)
Confidence 47889999999999 8999999999984 4899 899999999999988 332 1234578899999999999
Q ss_pred -CCCCEEEecccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhh---hcCC--eEEEecCCCHHHHHHHHHHhhhh
Q 011567 168 -GTPDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLY---LSRS--TVVYFKHNDMDSLRNTLERVTAD 238 (483)
Q Consensus 168 -g~e~~i~~~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~---~s~~--~v~~~~~~d~~~Le~~l~~~~~~ 238 (483)
+.+.+++++||++|+++|++. ++++.++|.++..||+.....+. ..+. .+..+++||+++|++.+++...
T Consensus 154 p~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~~d~~~l~~~l~~~~~- 232 (465)
T 2yky_A 154 PSIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVYNDVEGTADLLKRHGH- 232 (465)
Confidence 677888889999999999876 46788899999999987765551 1122 4567788999999999875322
Q ss_pred hhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccc
Q 011567 239 NKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAM 314 (483)
Q Consensus 239 ~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~ 314 (483)
++++|++||+++++|.+.| +++|+++|++||++||+||+|+ ++.|. .+..+++|+.| |++ ||
T Consensus 233 ------~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~--~~a~~~~gv~p---Di~--t~ 298 (465)
T 2yky_A 233 ------DCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSG--GGAQEMLGISA---DLT--TL 298 (465)
Confidence 3789999999999998877 9999999999999999999999 66553 34567888876 776 89
Q ss_pred cccccC--CCceeeccHHHHHHHHhc--C---CceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC
Q 011567 315 GHALAT--EGGFCTGSARVVDHQRLS--S---SGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI 387 (483)
Q Consensus 315 ~K~lg~--~GG~i~~~~~~~~~~~~~--~---~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~ 387 (483)
+|++|+ +.|++++++++++.+... + .+.+| +.||+++++++++|+.++++ ++.+++++++++++++|+++
T Consensus 299 sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~--~~npla~aAa~aaL~~l~~~-~~~~~~~~~~~~l~~~L~~~ 375 (465)
T 2yky_A 299 GKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTF--NNNILTMSAGHAALTQIYTR-QAASDLSASGDRFRANLNRI 375 (465)
Confidence 999984 237889999999988651 1 22333 56899999999999998764 58999999999999999875
Q ss_pred C-Ccee--ecCCCCCEEEEEecCCC-----CCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCC
Q 011567 388 H-GLSI--ASNPESPIVFLILEKST-----GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAH 459 (483)
Q Consensus 388 ~-~~~i--~~~~~~~i~~l~l~~~~-----~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~ 459 (483)
. .+.+ ...+.+.++++.+.+.. .....+.....+++..+++ +||++.+..+. . ++..+
T Consensus 376 ~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~GV~v~p~~~~----------~---~s~~~ 441 (465)
T 2yky_A 376 AVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLR-KGIYLAPRGMY----------A---LSLEI 441 (465)
Confidence 2 2222 22346778888775310 0000122335577887775 59999876431 1 66779
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 011567 460 SEADLVKACESLKRISAVV 478 (483)
Q Consensus 460 t~edi~~~~~~l~~~~~~~ 478 (483)
|++||++++++++++++++
T Consensus 442 t~edid~~l~~l~~~l~~~ 460 (465)
T 2yky_A 442 ADAGRDAFAEALADFIGEQ 460 (465)
Confidence 9999999999999988765
No 35
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=6.1e-36 Score=302.58 Aligned_cols=337 Identities=19% Similarity=0.210 Sum_probs=261.5
Q ss_pred CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (483)
Q Consensus 92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~ 167 (483)
.|.++++++|.+++ .+|++||||+++ ..+|| .+|++.+++.+++++++.++. .+..+...+++++|++++
T Consensus 18 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~la~~~ 91 (392)
T 3ruy_A 18 LPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGH-RHPKIINALIDQANRVTLTSR-----AFHSDQLGPWYEKVAKLT 91 (392)
T ss_dssp CSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCSCCCT-----TSEETTHHHHHHHHHHHH
T ss_pred CCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCC-CCHHHHHHHHHHHHhcccccc-----ccCCHHHHHHHHHHHHhc
Confidence 46778999999999 899999999987 45888 799999999999988654321 134567899999999999
Q ss_pred CCCCEEEecccHHHHHhhhhhhccC----------CcEEEEc-CCchhHHHhHhhhcCC------------eEEEecCCC
Q 011567 168 GTPDSILYSYGLSTMFSAIPCFCKK----------GDLIVAD-EGVHWGIQNGLYLSRS------------TVVYFKHND 224 (483)
Q Consensus 168 g~e~~i~~~sG~~a~~~ai~~~~~~----------gdiI~~~-~~~h~s~~~g~~~s~~------------~v~~~~~~d 224 (483)
|.++++++++|++|+..+++++..+ +|.|++. ..+|+.......+.+. .+..++++|
T Consensus 92 g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (392)
T 3ruy_A 92 NKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGD 171 (392)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTC
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCccc
Confidence 9888888899999999999876543 5566654 4555555444444322 467788899
Q ss_pred HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccc
Q 011567 225 MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEH 299 (483)
Q Consensus 225 ~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~ 299 (483)
+++|++.++. ++++|+++++++++|.+.| +++|+++|++||+++|+||+|+. +|++|.++ .++
T Consensus 172 ~~~l~~~l~~----------~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~--~~~~g~~~~~~~ 239 (392)
T 3ruy_A 172 LEALKAAITP----------NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTG--LGRTGKVFACDW 239 (392)
T ss_dssp HHHHHHHCCT----------TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTT--TTTTSSSSGGGG
T ss_pred HHHHHHHhcc----------CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhC--CCccccchhhhc
Confidence 9999988752 3789999999999999998 99999999999999999999963 45555544 356
Q ss_pred cCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 011567 300 CGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKN 376 (483)
Q Consensus 300 ~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~ 376 (483)
+++.+ |++ |+||++++ .+|++++++++++.++....+..| +.+++.++++.++++.++. +++.++++++
T Consensus 240 ~~~~~---d~~--~~SK~l~gG~~~~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~ 311 (392)
T 3ruy_A 240 DNVTP---DMY--ILGKALGGGVFPISCAAANRDILGVFEPGSHGSTF--GGNPLACAVSIAALEVLEE-EKLTERSLQL 311 (392)
T ss_dssp GTCCC---SEE--EECGGGGTTTSCCEEEEECHHHHTTCCTTSSCCSS--TTCHHHHHHHHHHHHHHHH-TTHHHHHHHH
T ss_pred cCCCC---CEE--EEchhhhCChhhhEEEEECHHHHhhhccCCcCCCC--CCCHHHHHHHHHHHHHHHh-hhHHHHHHHH
Confidence 67655 776 78899975 368999999998877655444444 4589999999999998876 4689999999
Q ss_pred HHHHHHhhccCC--CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEE
Q 011567 377 TAILRTGLSDIH--GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLF 454 (483)
Q Consensus 377 ~~~l~~~L~~~~--~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~ 454 (483)
.+++++.|+++. .+... .+.+.++.+.++. ...++.+.++ ++||.+.+.. +..+|++
T Consensus 312 ~~~l~~~L~~~~~~~~~~~-~~~g~~~~~~~~~----------~~~~l~~~l~-~~gi~v~~~~---------~~~iRi~ 370 (392)
T 3ruy_A 312 GEKLVGQLKEIDNPMITEV-RGKGLFIGIELNE----------PARPYCEQLK-AAGLLCKETH---------ENVIRIA 370 (392)
T ss_dssp HHHHHHHHTTCCCTTEEEE-EEETTEEEEEESS----------CSHHHHHHHH-TTTEECCCBT---------TTEEEEC
T ss_pred HHHHHHHHHHhcCCCceEE-EeeeeEEEEEEcc----------hHHHHHHHHH-HCCcEEecCC---------CCEEEEE
Confidence 999999998862 23322 2357788887743 1225666655 5699998653 2449999
Q ss_pred ccCCCCHHHHHHHHHHHHHHH
Q 011567 455 VSAAHSEADLVKACESLKRIS 475 (483)
Q Consensus 455 ~~~~~t~edi~~~~~~l~~~~ 475 (483)
++..+|++|+++++++|++++
T Consensus 371 ~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 371 PPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp CCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999875
No 36
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=100.00 E-value=3.8e-35 Score=299.96 Aligned_cols=356 Identities=20% Similarity=0.225 Sum_probs=264.8
Q ss_pred CCccccCCCCeEE-ECCeeEEEeecCC---CCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh-
Q 011567 93 PPVLESAAGPHTI-ISGKEVVNFASAN---YLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL- 167 (483)
Q Consensus 93 ~~~i~~~~g~~~~-~~G~~~id~~s~~---~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~- 167 (483)
|.++++++|.++| .+|++||||+++. ++|+ .+|++.+++.+++++++.++. .|+..+...+|++.|++++
T Consensus 24 ~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~~~~~----~~~~~~~~~~l~~~la~~~~ 98 (426)
T 1sff_A 24 PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGH-LHPKVVAAVEAQLKKLSHTCF----QVLAYEPYLELCEIMNQKVP 98 (426)
T ss_dssp EEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHTTTCSCCCT----TTEECHHHHHHHHHHHHHSS
T ss_pred CceEEecccCEEEeCCCCEEEEcccChhhcccCC-CCHHHHHHHHHHHHhCCCccc----cccCCHHHHHHHHHHHHhCC
Confidence 6678999999999 7999999999873 8999 899999999999987654321 3455678899999999999
Q ss_pred C-C-CCEEEecccHHHHHhhhh---hhccCCcEEEEcCCchhHHHhHhhhcCCe-------------EEEecC-----C-
Q 011567 168 G-T-PDSILYSYGLSTMFSAIP---CFCKKGDLIVADEGVHWGIQNGLYLSRST-------------VVYFKH-----N- 223 (483)
Q Consensus 168 g-~-e~~i~~~sG~~a~~~ai~---~~~~~gdiI~~~~~~h~s~~~g~~~s~~~-------------v~~~~~-----~- 223 (483)
| . ++.+++++|++|+..+++ ++++++++|+.+..+|+.+..++.+.+.+ +..++. +
T Consensus 99 ~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~ 178 (426)
T 1sff_A 99 GDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGI 178 (426)
T ss_dssp CSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTB
T ss_pred cccccEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCcccccc
Confidence 5 4 456666889999999988 78888888888888998877777665542 444443 2
Q ss_pred ----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCc
Q 011567 224 ----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRG 295 (483)
Q Consensus 224 ----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g 295 (483)
|+++|++.+++... +.++++|+++|+++|+|.+.+ +++|+++|++||++||+||+|+. ++++|.+
T Consensus 179 ~~~~d~~~l~~~l~~~~~-----~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g~~ 251 (426)
T 1sff_A 179 SEDDAIASIHRIFKNDAA-----PEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSG--AGRTGTL 251 (426)
T ss_dssp CHHHHHHHHHHHHHHTCC-----GGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTT--TTTTSSS
T ss_pred chHHHHHHHHHHHHhccC-----CCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhc--cCcccch
Confidence 67778877764210 013789999999888997777 99999999999999999999993 5555654
Q ss_pred c-ccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHH
Q 011567 296 L-TEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLIT 371 (483)
Q Consensus 296 ~-~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~ 371 (483)
. .+++++.+ |++ |+||++|+ | ||+++++++++.++... ..++.+.+++.++++.++++.+++. +..+
T Consensus 252 ~~~~~~~~~~---di~--s~sK~~~~-GlriG~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~aal~~~~~~-~~~~ 322 (426)
T 1sff_A 252 FAMEQMGVAP---DLT--TFAKSIAG-GFPLAGVTGRAEVMDAVAPGG--LGGTYAGNPIACVAALEVLKVFEQE-NLLQ 322 (426)
T ss_dssp SGGGGTTSCC---SEE--EECGGGGT-SSCCEEEEEEHHHHTTSCTTS--BCCSSSSCHHHHHHHHHHHHHHHHT-THHH
T ss_pred hhhhhcCCCC---CEE--EEcccccC-CCceEEEEEcHHHHhhhccCC--cCcCCCCCHHHHHHHHHHHHHHHhc-CHHH
Confidence 4 35566544 776 89999997 7 99999999888765322 2233356899999999999988764 4788
Q ss_pred HHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCC
Q 011567 372 KLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRL 447 (483)
Q Consensus 372 ~l~~~~~~l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~ 447 (483)
+++++.+++++.|+++ +.+... .+.++++++.+.........+.....++++.+++ +||.+.+....
T Consensus 323 ~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~------- 393 (426)
T 1sff_A 323 KANDLGQKLKDGLLAIAEKHPEIGDV-RGLGAMIAIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGPY------- 393 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEE-EEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEESTT-------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCccccCCChHHHHHHHHHHHH-CCcEEecCCCC-------
Confidence 8999999999888763 222222 2347888888843110000012234567777665 59999876531
Q ss_pred CCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 448 PVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 448 ~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
+..+|++++..+|++|+++++++|+++++++
T Consensus 394 ~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 394 YNVLRILVPLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 2459999999999999999999999998765
No 37
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=100.00 E-value=3.7e-35 Score=302.37 Aligned_cols=364 Identities=15% Similarity=0.130 Sum_probs=264.6
Q ss_pred CCCHHHHHHHHhhcCCCCCCcccccccccCCCccccCCCCeEE--ECCeeEEEeecC---CCCCCCCChHHH-H-HHHH-
Q 011567 63 PLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTI--ISGKEVVNFASA---NYLGLIGHEKLL-E-SCTS- 134 (483)
Q Consensus 63 ~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~--~~G~~~id~~s~---~~lG~~~~p~i~-~-a~~~- 134 (483)
+++.+++.+...++.. .+. ++.+..+++++|.++| .||++||||+++ +.+|| .||++. + |+.+
T Consensus 14 ~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~-~~p~v~~~~A~~~~ 84 (449)
T 2cjg_A 14 PTTPDRVHEVLGRSML---VDG-----LDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGM-NPPALVDDREFHAE 84 (449)
T ss_dssp -CCGGGHHHHHHTTSC---CCS-----CSSCBCTTTCBBTEEEBTTTCCEEEESSHHHHTCSSCB-SCHHHHTCHHHHHH
T ss_pred CCCHHHHHHHHHHhhc---ccC-----CCeeEEEeeeeeCEEEECCCCcEEEEccCCccccCCCC-CCHHHHHHHHHHHH
Confidence 7788887766655431 111 1112334699999998 589999999876 67899 699999 9 9999
Q ss_pred --HHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC---CCCEEEecccHHHHHhhhhhh---cc------------CCc
Q 011567 135 --ALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG---TPDSILYSYGLSTMFSAIPCF---CK------------KGD 194 (483)
Q Consensus 135 --~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g---~e~~i~~~sG~~a~~~ai~~~---~~------------~gd 194 (483)
++++... .+++ +..+...+++++|+++++ .++++++++|++|+..++++. ++ +.+
T Consensus 85 ~~~~~~~~~--~~~~---~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~ 159 (449)
T 2cjg_A 85 LMQAALNKP--SNSD---VYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQ 159 (449)
T ss_dssp HHHHHTCCC--CTTT---CCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCE
T ss_pred HHHHHhcCC--CCcc---cCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCE
Confidence 8877532 1121 245778999999999985 456677799999999998743 33 345
Q ss_pred EEEEcCCchhHHHhHhhhcCC-------------eEEEecCCC--HHH-------------HHHHHHHhhhhhhhccCcc
Q 011567 195 LIVADEGVHWGIQNGLYLSRS-------------TVVYFKHND--MDS-------------LRNTLERVTADNKRAKKLR 246 (483)
Q Consensus 195 iI~~~~~~h~s~~~g~~~s~~-------------~v~~~~~~d--~~~-------------Le~~l~~~~~~~~~~~~~~ 246 (483)
+|+.+..+|+.+..++.+++. .+..++++| .+. |++.+++... ++
T Consensus 160 Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~-------~~ 232 (449)
T 2cjg_A 160 VLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPH-------DI 232 (449)
T ss_dssp EEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTT-------TE
T ss_pred EEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCC-------ce
Confidence 677777899877665555543 566777777 433 6666654222 47
Q ss_pred EEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccCCCCCceeEEEccccccccCC
Q 011567 247 RYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATE 321 (483)
Q Consensus 247 ~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~~ 321 (483)
++|++||+++++|.+.+ |++|+++|++||++||+||+|++ +|++|.+. .+++++.| |++ |+||++ +
T Consensus 233 ~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g--~g~~g~~~~~~~~~~~~---di~--t~sK~l--~ 303 (449)
T 2cjg_A 233 ACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTG--CGLTGTAWAYQQLDVAP---DIV--AFGKKT--Q 303 (449)
T ss_dssp EEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTT--TTTTSSSSTHHHHTCCC---SEE--EECGGG--S
T ss_pred EEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccC--CCccCcceeecccCCCc---eEE--EecCcc--c
Confidence 89999999999998777 99999999999999999999984 45566543 46778766 776 789999 4
Q ss_pred CceeeccHHHHHHHH-----hcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccC----CC-ce
Q 011567 322 GGFCTGSARVVDHQR-----LSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI----HG-LS 391 (483)
Q Consensus 322 GG~i~~~~~~~~~~~-----~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~----~~-~~ 391 (483)
-|++++++++++.+. ...++.+ .+.||+.++++.++++.+++ +++.++++++++++++.|+++ +. +.
T Consensus 304 iG~~~~~~~~~~~l~~~~~~~~~~~~t--~~~n~~~~~aa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~ 380 (449)
T 2cjg_A 304 VCGVMAGRRVDEVADNVFAVPSRLNST--WGGNLTDMVRARRILEVIEA-EGLFERAVQHGKYLRARLDELAADFPAVVL 380 (449)
T ss_dssp SEEEEECGGGGGSTTCTTTSTTSSCCS--SSSCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHSTTTSE
T ss_pred EEEEEECHHHhhhhhhcccCCcccccC--CCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhhCCCcee
Confidence 567777888887532 1122233 34589999999999998865 347889999999999999764 33 33
Q ss_pred eecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHH
Q 011567 392 IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESL 471 (483)
Q Consensus 392 i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l 471 (483)
.. .+.+.++.+.+.. .....++++.+++ +||++.+.. +..||++++..+|++||++++++|
T Consensus 381 ~~-~~~g~~~~~~~~~--------~~~~~~~~~~l~~-~Gv~v~~~g---------~~~iRi~~~~~~t~e~i~~~l~~l 441 (449)
T 2cjg_A 381 DP-RGRGLMCAFSLPT--------TADRDELIRQLWQ-RAVIVLPAG---------ADTVRFRPPLTVSTAEIDAAIAAV 441 (449)
T ss_dssp EE-EEETTEEEEECSS--------HHHHHHHHHHHHH-TTEECEEET---------TTEEEECCCTTCCHHHHHHHHHHH
T ss_pred eE-eeccEEEEEEECC--------hHHHHHHHHHHHH-CCeEEecCC---------CCEEEEECCCCCCHHHHHHHHHHH
Confidence 22 2457788887742 1124467877765 699998753 134999999999999999999999
Q ss_pred HHHHHHH
Q 011567 472 KRISAVV 478 (483)
Q Consensus 472 ~~~~~~~ 478 (483)
+++++++
T Consensus 442 ~~~l~~~ 448 (449)
T 2cjg_A 442 RSALPVV 448 (449)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
No 38
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=100.00 E-value=3.2e-35 Score=302.88 Aligned_cols=354 Identities=15% Similarity=0.164 Sum_probs=261.8
Q ss_pred CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (483)
Q Consensus 92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~ 167 (483)
.|.++++++|.++| .+|++|||++++ +++|| .+|++.+|+.+++++++ . ++...+..+...+++++|++++
T Consensus 32 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~-~~~~v~~a~~~~~~~~~-~---~~~~~~~~~~~~~l~~~la~~~ 106 (449)
T 3a8u_X 32 DPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGH-TRKEIQEAVAKQLSTLD-Y---SPGFQYGHPLSFQLAEKITDLT 106 (449)
T ss_dssp SCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCB-SCHHHHHHHHHHTTTCS-C---CCSSSCCCHHHHHHHHHHHTTS
T ss_pred CCceEEeeecCEEEECCCCEEEECCccHhhccCCC-CCHHHHHHHHHHHHhCC-C---ccccccCCHHHHHHHHHHHHhC
Confidence 57789999999999 799999999876 68999 59999999999998764 1 1111345678899999999999
Q ss_pred C--CCCEEEecccHHHHHhhhhhhcc--------CCc-EEEEcCCchhHHHhHhhhcCC--------------eEEEec-
Q 011567 168 G--TPDSILYSYGLSTMFSAIPCFCK--------KGD-LIVADEGVHWGIQNGLYLSRS--------------TVVYFK- 221 (483)
Q Consensus 168 g--~e~~i~~~sG~~a~~~ai~~~~~--------~gd-iI~~~~~~h~s~~~g~~~s~~--------------~v~~~~- 221 (483)
+ .++++++++|++|+..+++++.. ++| +|+.+..||+.+..++..++. ..+.++
T Consensus 107 ~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~ 186 (449)
T 3a8u_X 107 PGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTL 186 (449)
T ss_dssp STTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCC
T ss_pred CCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCc
Confidence 5 45667779999999999987652 444 566688899877766665542 222222
Q ss_pred ---CC----C--------HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeC
Q 011567 222 ---HN----D--------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDE 282 (483)
Q Consensus 222 ---~~----d--------~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DE 282 (483)
++ | +++||+.+++.... ++++|++||+++++|.+.| +++|+++|++||++||+||
T Consensus 187 ~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~------~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~De 260 (449)
T 3a8u_X 187 LASNAYSRGMPKEGGIALADELLKLIELHDAS------NIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDE 260 (449)
T ss_dssp CGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGG------GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEEC
T ss_pred cccCccccCChHHHHHHHHHHHHHHHHhcCCC------CEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEec
Confidence 21 5 78888888653211 3789999999988998888 9999999999999999999
Q ss_pred ccccccccCCCCc-cccccCCCCCceeEEEccccccccCC---CceeeccHHHHHHHHhcCC-------ceeecCCCcHH
Q 011567 283 SNSFGVLGRSGRG-LTEHCGVPVDKIDIVTAAMGHALATE---GGFCTGSARVVDHQRLSSS-------GYVFSASLPPY 351 (483)
Q Consensus 283 a~s~g~lg~~G~g-~~~~~~v~~~~~Di~~~s~~K~lg~~---GG~i~~~~~~~~~~~~~~~-------~~~fs~~~~p~ 351 (483)
+|+. +|++|.. ..+++++.| |++ |+||++++. .|++++++++++.++.... .+.++.+.||+
T Consensus 261 v~~~--~g~~g~~~~~~~~~~~~---di~--s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~ 333 (449)
T 3a8u_X 261 VITG--FGRTGSMFGADSFGVTP---DLM--CIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPV 333 (449)
T ss_dssp TTTT--TTTTSSSSHHHHHTCCC---SEE--EECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHH
T ss_pred cccC--ccccCcchhhhhcCCCC---CEE--EEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHH
Confidence 9952 3444443 346777766 776 899999852 4778888899988865421 12233456899
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHh
Q 011567 352 LASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKE 429 (483)
Q Consensus 352 ~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~ 429 (483)
.++++.++++.+++. ++.++++++.+++++.|+++.++++. ..+.++++++.+....... . ....++.+.++++
T Consensus 334 ~~aa~~aal~~~~~~-~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~--~-~~~~~~~~~l~~~ 409 (449)
T 3a8u_X 334 ACAAGLAALCLLQKE-NLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDA--I-VRPFEAGMALWKA 409 (449)
T ss_dssp HHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBS--S-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccc--c-ccHHHHHHHHHHC
Confidence 999999999988764 58899999999999999875333321 1235788888885421111 0 0122467766655
Q ss_pred CCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 430 DGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 430 ~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
||++.+.. ..+||+++..+|++|+++++++|+++++++
T Consensus 410 -Gv~v~~~g----------~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 410 -GFYVRFGG----------DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp -TEECEEET----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -CcEEecCC----------CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 99998752 239999999999999999999999998764
No 39
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=100.00 E-value=4.2e-35 Score=300.51 Aligned_cols=359 Identities=18% Similarity=0.181 Sum_probs=260.4
Q ss_pred CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (483)
Q Consensus 92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~ 167 (483)
.|.++.+++|.++| .+|++||||+++ .++|+ .+|++.+++.+++++++.. . ..+..+...+++++|++++
T Consensus 25 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~--~---~~~~~~~~~~l~~~la~~~ 98 (433)
T 1zod_A 25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGH-CHPEIVSVIGEYAGKLDHL--F---SEMLSRPVVDLATRLANIT 98 (433)
T ss_dssp CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCB-TCHHHHHHHHHHHHHCCCC--C---TTCCCHHHHHHHHHHHHHS
T ss_pred CCceEEEeecCEEEeCCCCEEEEcccchhccccCC-CCHHHHHHHHHHHHhCccc--c---cccCCHHHHHHHHHHHHhC
Confidence 46778999999999 799999999876 47898 8999999999999886431 1 1234578899999999999
Q ss_pred CC--CCEEEecccHHHHHhhhhhh---ccCCcEEEEcCCchhHHHhHhhhc-------------CCeEEEe------cCC
Q 011567 168 GT--PDSILYSYGLSTMFSAIPCF---CKKGDLIVADEGVHWGIQNGLYLS-------------RSTVVYF------KHN 223 (483)
Q Consensus 168 g~--e~~i~~~sG~~a~~~ai~~~---~~~gdiI~~~~~~h~s~~~g~~~s-------------~~~v~~~------~~~ 223 (483)
+. ++.+++++|++|+..+++++ .+++++|+.+..||+.....+..+ +...+.+ +++
T Consensus 99 ~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (433)
T 1zod_A 99 PPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFE 178 (433)
T ss_dssp CTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCE
T ss_pred CCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccC
Confidence 73 45666689999999998754 454557777888998766555442 2222222 223
Q ss_pred ---------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCcccccccc
Q 011567 224 ---------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLG 290 (483)
Q Consensus 224 ---------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg 290 (483)
|+++|++.+++... .++++|++||+++++|.+.| +++|+++|++||++||+||+|+. +|
T Consensus 179 ~~~~~~~~~d~~~le~~l~~~~~------~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~--~g 250 (433)
T 1zod_A 179 RNGAYDYLAELDYAFDLIDRQSS------GNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTG--VG 250 (433)
T ss_dssp ETTEECHHHHHHHHHHHHHHHCC------SCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTT--TT
T ss_pred CchhhhHHHHHHHHHHHHHhcCC------CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC--CC
Confidence 37788887764321 14789999999888998766 99999999999999999999983 34
Q ss_pred CCCCc-cccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcC
Q 011567 291 RSGRG-LTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEEN 366 (483)
Q Consensus 291 ~~G~g-~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~ 366 (483)
++|.. ..+++++.+ |++ |+||++|+ | |++++++++++.++.......++.+.||+.++++.++++.+++.
T Consensus 251 ~~g~~~~~~~~~~~~---di~--s~sK~~~~-G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~~ 324 (433)
T 1zod_A 251 RTGTMFACQRDGVTP---DIL--TLSKTLGA-GLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRD 324 (433)
T ss_dssp TTSSSSTHHHHTCCC---SEE--EECHHHHT-TSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred cCchHhHHhhcCCCC---CEE--EecccccC-CCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhC
Confidence 44543 346677765 775 89999985 4 89999999998886532221133356899999999999988764
Q ss_pred cHHHHHHHHHHHHHHHhhccC----CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc
Q 011567 367 PDLITKLKKNTAILRTGLSDI----HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML 442 (483)
Q Consensus 367 ~~~~~~l~~~~~~l~~~L~~~----~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~ 442 (483)
++.++++++.+++++.|+++ +.+... .+.+.++++.+.........+.....++.+.+++ +||++.+.....
T Consensus 325 -~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~- 400 (433)
T 1zod_A 325 -GLVARANVMGDRLRRGLLDLMERFDCIGDV-RGRGLLLGVEIVKDRRTKEPADGLGAKITRECMN-LGLSMNIVQLPG- 400 (433)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEEEEETTTTEECTTHHHHHHHHHHH-TTEECCEECCTT-
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEEecCccccCCChHHHHHHHHHHHH-CCCeEeccCCCC-
Confidence 47889999999999988764 222222 3457788887753110000001224467777664 699998764321
Q ss_pred ccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 443 DKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 443 ~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
.+..+||+++..+|++|+++++++|+++++++
T Consensus 401 ----~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 401 ----MGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp ----SCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 12459999999999999999999999998765
No 40
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=100.00 E-value=7.5e-35 Score=300.52 Aligned_cols=349 Identities=20% Similarity=0.232 Sum_probs=252.0
Q ss_pred CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (483)
Q Consensus 92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~ 167 (483)
.|.++++++|.++| .+|++||||+++ +++|| .+|++.+++.+++++ +.+. .+..+...++++++++++
T Consensus 39 ~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~-~~~~v~~a~~~~~~~-~~~~------~~~~~~~~~la~~l~~~~ 110 (453)
T 2cy8_A 39 HGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGH-GHPRVNAAIAEALSH-GVQY------AASHPLEVRWAERIVAAF 110 (453)
T ss_dssp CCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCB-TCHHHHHHHHHHHTT-TCSS------CSSCHHHHHHHHHHHHHC
T ss_pred CCceEEEeecCEEEECCCCEEEECcccHhhcccCC-CCHHHHHHHHHHHHh-CCCC------CCCCHHHHHHHHHHHhhC
Confidence 47788999999999 799999999988 88999 899999999999987 3321 124577888888888887
Q ss_pred -CCCCEEEecccHHHHHhhhhh---hccCCcEEEEcCCchhHHHhHhhh----------cCC------eEEEecCCCHHH
Q 011567 168 -GTPDSILYSYGLSTMFSAIPC---FCKKGDLIVADEGVHWGIQNGLYL----------SRS------TVVYFKHNDMDS 227 (483)
Q Consensus 168 -g~e~~i~~~sG~~a~~~ai~~---~~~~gdiI~~~~~~h~s~~~g~~~----------s~~------~v~~~~~~d~~~ 227 (483)
+.++++++++|++|+..++++ +++++++|+++..||+.....+.. .+. .+..++++|+++
T Consensus 111 ~~~~~v~~~~gg~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~ 190 (453)
T 2cy8_A 111 PSIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEG 190 (453)
T ss_dssp TTCSEEEEESCHHHHHHHHHHHHHHHHCCCEEEEECC----------------------------CGGGEEEECTTCHHH
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCCCCHHH
Confidence 456677779999999999988 888888999998888654322211 122 466778899999
Q ss_pred HHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCC-ccccccCC
Q 011567 228 LRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGR-GLTEHCGV 302 (483)
Q Consensus 228 Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~-g~~~~~~v 302 (483)
|++.+++... ++++|++||+++++|.+.| +++|+++|++||++||+||+|++. ++|. +..+++++
T Consensus 191 le~~l~~~~~-------~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~---~~g~~~~~~~~~~ 260 (453)
T 2cy8_A 191 MREVFANHGS-------DIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF---RVGNHGMQALLDV 260 (453)
T ss_dssp HHHHHHHHGG-------GEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT---TTCTTHHHHHHTC
T ss_pred HHHHHHhcCC-------CEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc---ccCchhhhHHhCC
Confidence 9999875422 3789999999888898887 999999999999999999999842 2333 33467787
Q ss_pred CCCceeEEEccccccccC--CCceeeccHHHHHHHHhc--CCceee-cCCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHH
Q 011567 303 PVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLS--SSGYVF-SASLPPYLASAAITAIDV-LEENPDLITKLKKN 376 (483)
Q Consensus 303 ~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~--~~~~~f-s~~~~p~~~aaa~~al~~-l~~~~~~~~~l~~~ 376 (483)
.| |++ |++|++++ ++|++++++++++.++.. ...+.+ +.+.||+.++++.++++. + . +++.++++++
T Consensus 261 ~~---di~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~-~~~~~~~~~~ 333 (453)
T 2cy8_A 261 QP---DLT--CLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-E-DDVCAKINDL 333 (453)
T ss_dssp CC---SEE--EEEGGGGTTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-H-TTHHHHHHHH
T ss_pred CC---cEE--EEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-h-hhHHHHHHHH
Confidence 66 776 89999974 568999999998877541 111111 235689999999999998 7 4 3478899999
Q ss_pred HHHHHHhhccCC---CceeecCCCCCEEEEEecC-----CC------CCchhhHHHHHHHHHHHHHhCCEEEEeeccccc
Q 011567 377 TAILRTGLSDIH---GLSIASNPESPIVFLILEK-----ST------GSMKNDLQLLEDIADWALKEDGVFVVTSKRSML 442 (483)
Q Consensus 377 ~~~l~~~L~~~~---~~~i~~~~~~~i~~l~l~~-----~~------~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~ 442 (483)
.+++++.|+++. ++.....+.+.++++.+.. .. .....+.....++.+.+++ +||++.+.
T Consensus 334 ~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gv~v~~~----- 407 (453)
T 2cy8_A 334 GQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALIL-EGVDIGGR----- 407 (453)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHH-TTEECBTT-----
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHH-CCeEEeCC-----
Confidence 999999887641 3322223467899998853 10 0000012234567777665 59998421
Q ss_pred ccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567 443 DKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 479 (483)
Q Consensus 443 ~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~ 479 (483)
. |+.++..+|++|+++++++|+++++++.
T Consensus 408 ------~--~~~l~~~~t~~~i~~~l~~l~~~l~~~~ 436 (453)
T 2cy8_A 408 ------G--SVFLSAQHEREHVEHLVTTFDRVLDRLA 436 (453)
T ss_dssp ------T--EEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ------C--CEEeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 1 3445788999999999999999988764
No 41
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=100.00 E-value=1.3e-34 Score=294.10 Aligned_cols=347 Identities=17% Similarity=0.207 Sum_probs=265.9
Q ss_pred CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (483)
Q Consensus 92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~ 167 (483)
.|.++++++|.++| .+|++||||+++ +++|+ ++|++.+++.++++++...+ .....+...+++++|++++
T Consensus 21 ~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~-~~p~v~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~la~~~ 94 (406)
T 4adb_A 21 APFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGH-AHPELREALNEQASKFWHTG-----NGYTNEPVLRLAKKLIDAT 94 (406)
T ss_dssp CSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCSCCC-----TTSCCHHHHHHHHHHHHHS
T ss_pred CCceEEeeccCEEEeCCCCEEEECCCchhhcccCC-CCHHHHHHHHHHHHhccccc-----CCcCCHHHHHHHHHHHhhC
Confidence 46778999999999 799999999998 99999 89999999999998743211 1123467899999999999
Q ss_pred CCCCEEEecccHHHHHhhhhhhc---------cCCcEEEEcCCchhHHHhHhhhcC------------CeEEEecCCCHH
Q 011567 168 GTPDSILYSYGLSTMFSAIPCFC---------KKGDLIVADEGVHWGIQNGLYLSR------------STVVYFKHNDMD 226 (483)
Q Consensus 168 g~e~~i~~~sG~~a~~~ai~~~~---------~~gdiI~~~~~~h~s~~~g~~~s~------------~~v~~~~~~d~~ 226 (483)
|.++++++++|++|+..+++++. +++++|+.+..+|.....+....+ ..+..++++|++
T Consensus 95 ~~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 174 (406)
T 4adb_A 95 FADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDIN 174 (406)
T ss_dssp SCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHH
T ss_pred CCCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHH
Confidence 99988888999999999998874 345677778888877666655544 467788889999
Q ss_pred HHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc----cChHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cccC
Q 011567 227 SLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI----APLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCG 301 (483)
Q Consensus 227 ~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i----~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~ 301 (483)
+|++.++. ++++|+++|.++.+|.+ .++++|+++|++||+++|+||+|+. ++++|.++. ++++
T Consensus 175 ~l~~~l~~----------~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~--~~~~g~~~~~~~~~ 242 (406)
T 4adb_A 175 SASALIDD----------STCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTG--VGRTGELYAYMHYG 242 (406)
T ss_dssp HHHTTCST----------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTT--TTTTSSSSHHHHHT
T ss_pred HHHHHhcC----------CeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC--CCccchhHHHHhcC
Confidence 98887742 37888899876665543 3499999999999999999999973 455565543 5667
Q ss_pred CCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 011567 302 VPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAI 379 (483)
Q Consensus 302 v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~ 379 (483)
+.+ |++ |++|++++ .+|++++++++++.++....+.+| +.+++.++++.++++.++. ++..++++++.++
T Consensus 243 ~~~---d~~--t~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~ 314 (406)
T 4adb_A 243 VTP---DLL--TTAKALGGGFPVGALLATEECARVMTVGTHGTTY--GGNPLASAVAGKVLELINT-PEMLNGVKQRHDW 314 (406)
T ss_dssp CCC---SEE--EECGGGGTTSCCEEEEECHHHHHTCCTTSSCCSS--TTCHHHHHHHHHHHHHHSS-HHHHHHHHHHHHH
T ss_pred CCC---CEE--EechhhcCCCCeEEEEEcHHHHhhhccCCcCCCC--CCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 665 777 78999983 258999999999887655444444 4589999999999998765 5788999999999
Q ss_pred HHHhhccCCC-cee--ecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc
Q 011567 380 LRTGLSDIHG-LSI--ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS 456 (483)
Q Consensus 380 l~~~L~~~~~-~~i--~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~ 456 (483)
+++.|+++.. +.. .....+.++++.+..... ....++++.+++ +||.+.+.. +..+|++++
T Consensus 315 l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~l~~-~gi~v~~~~---------~~~iRi~~~ 378 (406)
T 4adb_A 315 FVERLNTINHRYGLFSEVRGLGLLIGCVLNADYA------GQAKQISQEAAK-AGVMVLIAG---------GNVVRFAPA 378 (406)
T ss_dssp HHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTT------TCHHHHHHHHHH-TTEECEESS---------TTEEEECCC
T ss_pred HHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcH------HHHHHHHHHHHH-CCcEEeecC---------CCeEEEECC
Confidence 9999876411 111 112346788888854210 013356776655 599998743 244999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Q 011567 457 AAHSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 457 ~~~t~edi~~~~~~l~~~~~~~~~ 480 (483)
..+|++|+++++++|+++++++..
T Consensus 379 ~~~~~e~i~~~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 379 LNVSEEEVTTGLDRFAAACEHFVS 402 (406)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988754
No 42
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=2.9e-34 Score=291.44 Aligned_cols=359 Identities=15% Similarity=0.142 Sum_probs=264.2
Q ss_pred CccccCCCCeEEECCee----EEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC
Q 011567 94 PVLESAAGPHTIISGKE----VVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT 169 (483)
Q Consensus 94 ~~i~~~~g~~~~~~G~~----~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~ 169 (483)
.++...+|.+++.+|++ +|||+++++.++..+|.+++++.+++++.+... .....|..+++.++++.+++++|.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~--y~~~~g~~~l~~~l~~~l~~~~g~ 97 (407)
T 3nra_A 20 EVRQSAAGLEALIRGAPIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQA--YTEYRGDLGIRDLLAPRLAAFTGA 97 (407)
T ss_dssp -------CCTTTCCSCCCCSCCEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHH--SCCTTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhhhhHHHhhcCCCCCceeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCC--cCCCCCCHHHHHHHHHHHHHHhCC
Confidence 45677788888766655 999999998888789999999999988632211 111345678999999999999986
Q ss_pred -----CCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----------CHHHHHHHHH
Q 011567 170 -----PDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----------DMDSLRNTLE 233 (483)
Q Consensus 170 -----e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----------d~~~Le~~l~ 233 (483)
++.+++++|++|+..+++++.++||.|+++.+.|.++..+++..|.+++.++++ |+++|++.++
T Consensus 98 ~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 177 (407)
T 3nra_A 98 PVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK 177 (407)
T ss_dssp CCCTTTSEEEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHH
T ss_pred CCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHh
Confidence 567777888999999999999999999999999999999999999999888872 7888888886
Q ss_pred HhhhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEE
Q 011567 234 RVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIV 310 (483)
Q Consensus 234 ~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~ 310 (483)
+ + +++|++..+++++|.+.| +++|+++|++||+++|+||+|+.+.++..+.+....++....+.+++
T Consensus 178 ~---~-------~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~ 247 (407)
T 3nra_A 178 A---G-------ARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVT 247 (407)
T ss_dssp T---T-------CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEE
T ss_pred h---C-------CcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEE
Confidence 5 1 456666667889999999 99999999999999999999998766532222222232012445788
Q ss_pred EccccccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhcc
Q 011567 311 TAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSD 386 (483)
Q Consensus 311 ~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~ 386 (483)
++|+||++|..| ||+++++++++.++.....+.++ .+++.++++.++++...+ .++.+++++++.+++.+.|++
T Consensus 248 ~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 325 (407)
T 3nra_A 248 IMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLR--AAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRG 325 (407)
T ss_dssp EECSSSTTCCGGGCCEEEEECHHHHHHHHHHHHHHTSS--SCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EeCcccccCCCeeeEEEEEcCHHHHHHHHHHHhhhccC--CChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998666 99999999998877654444443 366666666555542111 135678888899999999998
Q ss_pred CCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHH
Q 011567 387 IHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVK 466 (483)
Q Consensus 387 ~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~ 466 (483)
++++.+..+..+.++++.+..... ...++++.+++++||.+.++..+.. ..+..+|++++. |+++|++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~~~~---~~~~~iRis~~~--~~~~i~~ 393 (407)
T 3nra_A 326 CEGVFARTPQAGSYLFPRLPKLAV-------APAEFVKILRLQAGVVVTPGTEFSP---HTADSVRLNFSQ--DHEAAVA 393 (407)
T ss_dssp STTCBCCCCSBSSEECCBCCCBSS-------CHHHHHHHHHHHHCEECEEGGGTCT---TCTTBEEEECCS--CHHHHHH
T ss_pred CCCceeccCCeeEEEEEeCCCCCC-------CHHHHHHHHHHhCCEEEeCchhhCC---CCCCEEEEEeCC--CHHHHHH
Confidence 878887655556777776643110 1235666665656999998754321 013459999974 9999999
Q ss_pred HHHHHHHHHHHH
Q 011567 467 ACESLKRISAVV 478 (483)
Q Consensus 467 ~~~~l~~~~~~~ 478 (483)
++++|+++++++
T Consensus 394 ~~~~l~~~~~~~ 405 (407)
T 3nra_A 394 AARRIVTLVERY 405 (407)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 43
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.6e-33 Score=287.70 Aligned_cols=341 Identities=16% Similarity=0.207 Sum_probs=249.2
Q ss_pred CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (483)
Q Consensus 92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~ 167 (483)
.|.++.+++|.++| .+|++|||++++ +++|+..+|++++|+.++++++.. .+.+ .+..+...+++++|++++
T Consensus 24 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~-~~~~---~~~~~~~~~l~~~la~~~ 99 (419)
T 2eo5_A 24 FPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAH-AAAN---DFYNIPQLELAKKLVTYS 99 (419)
T ss_dssp CCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCC-CSCS---CSCCHHHHHHHHHHHHHS
T ss_pred CCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCcc-cccc---ccCCHHHHHHHHHHHHhC
Confidence 47788999999999 799999999887 589994489999999999987532 1111 234567899999999999
Q ss_pred CCC---CEEEecccHHHHHhhhhhhcc--CCcEEEEcCCchhHHHhHhhhcC-------------CeEEEecCCC-----
Q 011567 168 GTP---DSILYSYGLSTMFSAIPCFCK--KGDLIVADEGVHWGIQNGLYLSR-------------STVVYFKHND----- 224 (483)
Q Consensus 168 g~e---~~i~~~sG~~a~~~ai~~~~~--~gdiI~~~~~~h~s~~~g~~~s~-------------~~v~~~~~~d----- 224 (483)
|.+ +.+++++|++|+..+++++.. ++++|+.+..+|+.+..++.+++ ..+..+++++
T Consensus 100 ~~~~~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 179 (419)
T 2eo5_A 100 PGNFQKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNP 179 (419)
T ss_dssp SCSSCEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCT
T ss_pred CCCcCCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCcccccc
Confidence 863 456668899999999886543 44566667788877665554432 2455665543
Q ss_pred ----------------HHHHH-HHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCc
Q 011567 225 ----------------MDSLR-NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDES 283 (483)
Q Consensus 225 ----------------~~~Le-~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa 283 (483)
+++|+ +.+++.. .+.++++|+++|+++++|.+.| +++|+++|++||+++|+||+
T Consensus 180 ~g~~~~~~~~~~~~~~~~~l~~~~i~~~~-----~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~ 254 (419)
T 2eo5_A 180 WHINGYENPSELVNRVIEFIEDYIFVNLV-----PPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEV 254 (419)
T ss_dssp TCCCTTTCHHHHHHHHHHHHHHTHHHHTC-----CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECT
T ss_pred ccccccccchhhHHHHHHHHHHHHHhhcc-----CCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 45666 6555321 0113789999999888898776 99999999999999999999
Q ss_pred cccccccCCCCc-cccccCCCCCceeEEEccccccccCCC----ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHH
Q 011567 284 NSFGVLGRSGRG-LTEHCGVPVDKIDIVTAAMGHALATEG----GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAIT 358 (483)
Q Consensus 284 ~s~g~lg~~G~g-~~~~~~v~~~~~Di~~~s~~K~lg~~G----G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~ 358 (483)
|+. +|++|.. ..+++++.+ |++ |+||++|+ | ||++++++++ .+ ..... .+.+.|+++++++.+
T Consensus 255 ~~~--~g~~g~~~~~~~~~~~~---d~~--t~sK~~~~-G~~riG~~~~~~~~~-~~-~~~~~--~t~~~n~~~~~aa~a 322 (419)
T 2eo5_A 255 QMG--LGRTGKLFAIENFNTVP---DVI--TLAKALGG-GIMPIGATIFRKDLD-FK-PGMHS--NTFGGNALACAIGSK 322 (419)
T ss_dssp TTT--TTTTSSSSGGGGGTCCC---SEE--EECGGGGT-TTSCCEEEEEEGGGC-CC---------CCCCCHHHHHHHHH
T ss_pred ccC--CccCcchhhHHhcCCCC---CEE--EecccccC-CccceEEEEEchHhh-cC-CcccC--CCCCCCHHHHHHHHH
Confidence 983 3444443 346677765 776 79999984 5 8888888877 55 22222 233568999999999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeec
Q 011567 359 AIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSK 438 (483)
Q Consensus 359 al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~ 438 (483)
+++.+++ +.++++++++++.+.|+++ +... .+.++++++.+.. +..... +++.++ ++||++.+..
T Consensus 323 al~~~~~---~~~~~~~~~~~l~~~L~~~--~~~~-~~~g~~~~i~~~~-------~~~~~~-~~~~l~-~~Gv~v~~~~ 387 (419)
T 2eo5_A 323 VIDIVKD---LLPHVNEIGKIFAEELQGL--ADDV-RGIGLAWGLEYNE-------KKVRDR-IIGESF-KRGLLLLPAG 387 (419)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHTTS--SSEE-EEETTEEEEECSC-------HHHHHH-HHHHHH-HTTEECEEET
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHh--hhhe-EeeeEEEEEEEec-------CccHHH-HHHHHH-HCCCEEecCC
Confidence 9998754 7899999999999999875 2222 2357788887731 112244 677666 5699998753
Q ss_pred ccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 439 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 439 ~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
+..+||+++..+|++|+++++++|++++++
T Consensus 388 ---------~~~lRis~~~~~t~e~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 388 ---------RSAIRVIPPLVISEEEAKQGLDILKKVIKV 417 (419)
T ss_dssp ---------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 134999999999999999999999998865
No 44
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=100.00 E-value=1.1e-33 Score=289.62 Aligned_cols=345 Identities=15% Similarity=0.145 Sum_probs=253.2
Q ss_pred CCc-cccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567 93 PPV-LESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (483)
Q Consensus 93 ~~~-i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~ 167 (483)
|++ +++++|.++| .+|++|||++++ +++|+ .+|++.+++.++++++...+. + .| ..+...+++++|++++
T Consensus 25 ~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~-~~p~v~~a~~~~~~~~~~~~~-~--~~-~~~~~~~l~~~la~~~ 99 (429)
T 1s0a_A 25 PVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGY-NHPQLNAAMKSQIDAMSHVMF-G--GI-THAPAIELCRKLVAMT 99 (429)
T ss_dssp CCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCB-SCHHHHHHHHHHHHHCSCCCC-S--SE-ECHHHHHHHHHHHHHS
T ss_pred CceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCC-CCHHHHHHHHHHHHhcccccc-c--cc-CCHHHHHHHHHHHHhC
Confidence 554 8899999999 799999999887 68998 789999999999988543211 1 12 3467789999999999
Q ss_pred C--CCCEEEecccHHHHHhhhhhhc---c----CCc-EEEEcCCchhHHHhHhhhcC---------------CeEEEec-
Q 011567 168 G--TPDSILYSYGLSTMFSAIPCFC---K----KGD-LIVADEGVHWGIQNGLYLSR---------------STVVYFK- 221 (483)
Q Consensus 168 g--~e~~i~~~sG~~a~~~ai~~~~---~----~gd-iI~~~~~~h~s~~~g~~~s~---------------~~v~~~~- 221 (483)
+ .++.+++++|++|+..+++++. + ++| +|+.+..+|+....++.+++ ...+.++
T Consensus 100 ~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (429)
T 1s0a_A 100 PQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQ 179 (429)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCC
T ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCc
Confidence 5 4566777999999999987643 3 355 55666678876554444322 3333332
Q ss_pred --------CCCHHHHHHHHHHhhhhhhhccCccEEEEEecc-cCCCCCccC----hHHHHHHHHHcCcEEEEeCcccccc
Q 011567 222 --------HNDMDSLRNTLERVTADNKRAKKLRRYIVVEAV-YQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGV 288 (483)
Q Consensus 222 --------~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v-~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~ 288 (483)
++|+++|++.+++... ++++|+++|+ ++++|.+.| +++|+++|++||+++|+||+|+.
T Consensus 180 ~~~~~~~~~~d~~~l~~~l~~~~~-------~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~-- 250 (429)
T 1s0a_A 180 SRMDGEWDERDMVGFARLMAAHRH-------EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATG-- 250 (429)
T ss_dssp SBC-CCCCGGGGHHHHHHHHHHTT-------TEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTT--
T ss_pred ccccccchHHHHHHHHHHHHhCCC-------CEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhC--
Confidence 3578888888865322 3789999999 888998777 99999999999999999999983
Q ss_pred ccCCCCc-cccccCCCCCceeEEEccccccccC---CCceeeccHHHHHHHHhcC-Cc--eeecCCCcHHHHHHHHHHHH
Q 011567 289 LGRSGRG-LTEHCGVPVDKIDIVTAAMGHALAT---EGGFCTGSARVVDHQRLSS-SG--YVFSASLPPYLASAAITAID 361 (483)
Q Consensus 289 lg~~G~g-~~~~~~v~~~~~Di~~~s~~K~lg~---~GG~i~~~~~~~~~~~~~~-~~--~~fs~~~~p~~~aaa~~al~ 361 (483)
+|++|.. ..+++++.+ |++ |+||++++ ..|++++++++++.++... .. ...+.+.|++.++++.++++
T Consensus 251 ~g~~g~~~~~~~~~~~~---d~~--t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~ 325 (429)
T 1s0a_A 251 FGRTGKLFACEHAEIAP---DIL--CLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLA 325 (429)
T ss_dssp TTTTSSSSGGGGGTCCC---SEE--EECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHH
T ss_pred CcccchHHHhhhcCCCC---CEE--EecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHH
Confidence 3444443 346667655 776 78999974 2388889999988876531 11 12233568999999999999
Q ss_pred HHhcCcHHHHHHHHHHHHHHHhhccC---CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeec
Q 011567 362 VLEENPDLITKLKKNTAILRTGLSDI---HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSK 438 (483)
Q Consensus 362 ~l~~~~~~~~~l~~~~~~l~~~L~~~---~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~ 438 (483)
.+++. +..++++++++++++.|+++ +++... .+.+.++++.+.... + ..++.+.++ ++||++.+..
T Consensus 326 ~~~~~-~~~~~~~~~~~~l~~~L~~l~~~~~~~~~-~~~g~~~~~~~~~~~-----~---~~~l~~~l~-~~Gi~v~~~~ 394 (429)
T 1s0a_A 326 ILESG-DWQQQVADIEVQLREQLAPARDAEMVADV-RVLGAIGVVETTHPV-----N---MAALQKFFV-EQGVWIRPFG 394 (429)
T ss_dssp HHHTC-HHHHHHHHHHHHHHHHHGGGGGCTTEEEE-EEETTEEEEEESSCB-----C---HHHHHHHHH-HTTEECCCBT
T ss_pred HHHhC-CHHHHHHHHHHHHHHHHHHHhcCCCEEEE-EEeeEEEEEEECCcc-----c---HHHHHHHHH-HCCCEEeccC
Confidence 88764 68899999999999999875 344322 234678888875321 1 235666655 4699997631
Q ss_pred ccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 439 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 439 ~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
..+||+++..+|++|+++++++|++++++
T Consensus 395 ----------~~iRis~~~~~t~e~i~~~~~~l~~~~~~ 423 (429)
T 1s0a_A 395 ----------KLIYLMPPYIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp ----------TEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred ----------CEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 34999999999999999999999988654
No 45
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=100.00 E-value=4.4e-34 Score=289.54 Aligned_cols=342 Identities=19% Similarity=0.249 Sum_probs=262.9
Q ss_pred cCCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567 91 CEPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 166 (483)
Q Consensus 91 ~~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~ 166 (483)
..|.++.+++|.++| .+|++|+||+++ +++|+ .+|++.+++.+++++++.++. . | ..+...+++++|+++
T Consensus 21 ~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~~~~~---~-~-~~~~~~~l~~~la~~ 94 (397)
T 2ord_A 21 RFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGH-SHPRLVEAIKDQAEKLIHCSN---L-F-WNRPQMELAELLSKN 94 (397)
T ss_dssp CCSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHHHCSCCCT---T-S-EEHHHHHHHHHHHHT
T ss_pred CCCceEEeeecCEEEECCCCEEEECCccccccccCC-CCHHHHHHHHHHHHhcccCcc---c-c-CCHHHHHHHHHHHHh
Confidence 346788999999999 799999999988 89999 899999999999998755321 1 2 357889999999999
Q ss_pred hCCCCEEEecccHHHHHhhhhhhc--------cCCcEEEEcCCchhHHHhHhhhcCCe------------EEEecCCCHH
Q 011567 167 LGTPDSILYSYGLSTMFSAIPCFC--------KKGDLIVADEGVHWGIQNGLYLSRST------------VVYFKHNDMD 226 (483)
Q Consensus 167 ~g~e~~i~~~sG~~a~~~ai~~~~--------~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~~~~d~~ 226 (483)
+|.++++++++|++|+..+++++. +++++|+.+..+|+++..++...+.+ +..++++|++
T Consensus 95 ~g~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~ 174 (397)
T 2ord_A 95 TFGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVE 174 (397)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTTCHH
T ss_pred cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCCCHH
Confidence 998888888999999999998875 34567778888888877777777665 7788889999
Q ss_pred HHHHHHHHhhhhhhhccCccEEEEEecccCCCCC-cc---ChHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cccC
Q 011567 227 SLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQ-IA---PLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCG 301 (483)
Q Consensus 227 ~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~-i~---~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~ 301 (483)
+|++.+++ ++++|+++++++++|. +. ++++|+++|++||+++|+||+|+ | ++++|++.. +.++
T Consensus 175 ~l~~~l~~----------~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~~~~~~ 242 (397)
T 2ord_A 175 DLRRKMSE----------DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQC-G-MGRTGKLFAYQKYG 242 (397)
T ss_dssp HHHHHCCT----------TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSHHHHHT
T ss_pred HHHHHhhc----------CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-C-CccCccchhhhhhC
Confidence 99887742 3789999999999998 43 48999999999999999999997 3 455555442 4566
Q ss_pred CCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 011567 302 VPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAI 379 (483)
Q Consensus 302 v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~ 379 (483)
+.+ |++ |++|++++ ..|+++++++++ .++.......| +.+++.++++.++++.+++ ++++++++++.++
T Consensus 243 ~~~---d~~--s~sK~~~~G~r~G~~~~~~~~~-~l~~~~~~~~~--~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~ 313 (397)
T 2ord_A 243 VVP---DVL--TTAKGLGGGVPIGAVIVNERAN-VLEPGDHGTTF--GGNPLACRAGVTVIKELTK-EGFLEEVEEKGNY 313 (397)
T ss_dssp CCC---SEE--EECGGGGTTSCCEEEEECSTTC-CCCTTSSCCSS--TTCHHHHHHHHHHHHHHTS-TTHHHHHHHHHHH
T ss_pred CCC---Cee--eeccccCCCcCeEEEEEchHhc-ccCCCCcCCCC--CCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHH
Confidence 544 776 78999983 247777777766 55432223333 4588999999999998876 4688999999999
Q ss_pred HHHhhccCC-Cceee--cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc
Q 011567 380 LRTGLSDIH-GLSIA--SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS 456 (483)
Q Consensus 380 l~~~L~~~~-~~~i~--~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~ 456 (483)
+.+.|+++. ++++. ..+.++++++.+.... ...++++.+++ +||.+.+.. +..+|++++
T Consensus 314 l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~l~~~l~~-~gi~v~~~~---------~~~iRis~~ 375 (397)
T 2ord_A 314 LMKKLQEMKEEYDVVADVRGMGLMIGIQFREEV--------SNREVATKCFE-NKLLVVPAG---------NNTIRFLPP 375 (397)
T ss_dssp HHHHHHHHHHHCTTEEEEEEETTEEEEEECTTS--------CHHHHHHHHHH-TTEECEEET---------TTEEEECCC
T ss_pred HHHHHHHHHHhCCceEEEEEEeEEEEEEECChH--------HHHHHHHHHHH-CCCEEccCC---------CCEEEEECC
Confidence 999987642 22221 1235778888875321 12356776555 699998752 244999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 011567 457 AAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 457 ~~~t~edi~~~~~~l~~~~~~ 477 (483)
..+|++|+++++++|++++++
T Consensus 376 ~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 376 LTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp TTCCHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHhh
Confidence 899999999999999988753
No 46
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=100.00 E-value=1.4e-33 Score=285.55 Aligned_cols=338 Identities=17% Similarity=0.220 Sum_probs=257.7
Q ss_pred CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (483)
Q Consensus 92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~ 167 (483)
.|+++.+++|.++| .+|++|+||+++ +++|+ .+|.+.+++.+++++++.++ + .| ..+...++++++++++
T Consensus 27 ~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~-~~~~v~~a~~~~~~~~~~~~---~-~~-~~~~~~~l~~~la~~~ 100 (395)
T 1vef_A 27 HDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGH-GNPEVVEAVKRQAETLMAMP---Q-TL-PTPMRGEFYRTLTAIL 100 (395)
T ss_dssp CSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHHHCCCCC---T-TS-CCHHHHHHHHHHHHTS
T ss_pred CCccEEecccCEEEeCCCCEEEEccCccccccCCC-CCHHHHHHHHHHHHhCCCCc---c-cc-CCHHHHHHHHHHHHhc
Confidence 46778999999999 799999999887 78998 88999999999998865422 1 12 4578899999999999
Q ss_pred C--CCCEEEecccHHHHHhhhhhh---ccCCcEEEEcCCchhHHHhHhhhcCCe------------EEEecCCCHHHHHH
Q 011567 168 G--TPDSILYSYGLSTMFSAIPCF---CKKGDLIVADEGVHWGIQNGLYLSRST------------VVYFKHNDMDSLRN 230 (483)
Q Consensus 168 g--~e~~i~~~sG~~a~~~ai~~~---~~~gdiI~~~~~~h~s~~~g~~~s~~~------------v~~~~~~d~~~Le~ 230 (483)
| .++++++++|++|+..+++++ .+++++|+.+..+|+.+...+...|.+ +..++++|+++|++
T Consensus 101 ~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~ 180 (395)
T 1vef_A 101 PPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKR 180 (395)
T ss_dssp CTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHH
T ss_pred CCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHH
Confidence 5 456777799999999998876 455557777777887776666666554 56677789999988
Q ss_pred HHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccCCCCC
Q 011567 231 TLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVD 305 (483)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~ 305 (483)
.+++ ++++|+++++++++|.+.| +++|+++|++||+++|+||+|+ | ++..|... .+.+++.+
T Consensus 181 ~i~~----------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~-~-~~~~g~~~~~~~~~~~~- 247 (395)
T 1vef_A 181 AVDE----------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT-G-MGRTGKRFAFEHFGIVP- 247 (395)
T ss_dssp HCCT----------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSTHHHHTCCC-
T ss_pred Hhcc----------CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc-C-CccCCchhHhhhcCCCC-
Confidence 7752 2688999999989999888 9999999999999999999998 3 45555543 24556544
Q ss_pred ceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Q 011567 306 KIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG 383 (483)
Q Consensus 306 ~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~ 383 (483)
|++ |++|++++ ..|++++++++++.++... +.++.+.+++.++++.++++.+.+ ++..++++++.+++.+.
T Consensus 248 --d~~--s~sK~~~~g~~~G~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~l~~~ 320 (395)
T 1vef_A 248 --DIL--TLAKALGGGVPLGVAVMREEVARSMPKGG--HGTTFGGNPLAMAAGVAAIRYLER-TRLWERAAELGPWFMEK 320 (395)
T ss_dssp --SEE--EECGGGGTTSSCEEEEEEHHHHHTSCTTS--SCCSSTTCHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHH
T ss_pred --CEE--EEcccccCCCceEEEEehHHHHhhhccCC--cCCCcCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHH
Confidence 776 88999975 2388888888887765422 223335688899989999988765 34788899999999999
Q ss_pred hccCCCcee--ecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCH
Q 011567 384 LSDIHGLSI--ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSE 461 (483)
Q Consensus 384 L~~~~~~~i--~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~ 461 (483)
|+++. .++ ...+.++++++.+... ..++.+.+++++||.+.+.. +..+|++++..+|+
T Consensus 321 l~~~~-~~~~~~~~~~g~~~~~~~~~~----------~~~l~~~l~~~~gi~v~~~~---------~~~iRi~~~~~~~~ 380 (395)
T 1vef_A 321 LRAIP-SPKIREVRGMGLMVGLELKEK----------AAPYIARLEKEHRVLALQAG---------PTVIRFLPPLVIEK 380 (395)
T ss_dssp HHTSC-CTTEEEEEEETTEEEEEESSC----------SHHHHHHHHHHHCEECEESS---------TTEEEECCCTTCCH
T ss_pred HHHhh-cCceEEEEEEEEEEEEEEcCh----------HHHHHHHHHHHCCeEEecCC---------CCEEEEeCCCCCCH
Confidence 98763 221 1123567888887531 22566766624599998742 24499999999999
Q ss_pred HHHHHHHHHHHHHH
Q 011567 462 ADLVKACESLKRIS 475 (483)
Q Consensus 462 edi~~~~~~l~~~~ 475 (483)
+|+++++++|++++
T Consensus 381 ~~i~~~~~~l~~~l 394 (395)
T 1vef_A 381 EDLERVVEAVRAVL 394 (395)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
No 47
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=3.1e-32 Score=278.21 Aligned_cols=354 Identities=12% Similarity=0.049 Sum_probs=259.7
Q ss_pred CCccccCCCCeEE-EC--CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC-
Q 011567 93 PPVLESAAGPHTI-IS--GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG- 168 (483)
Q Consensus 93 ~~~i~~~~g~~~~-~~--G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g- 168 (483)
+.+..+++|+++| .+ |++||||..++.. +..+|.+.+++.+++++...++.. ...+...++++.+++.+|
T Consensus 42 ~~~~~~g~g~~~~d~~~~g~~~i~~~~~~~~-~~~~~~v~~a~~~~~~~~~~~y~~-----~~~~l~~~l~~~l~~~~g~ 115 (421)
T 3l8a_A 42 TRPDRLNQFTYKWKTSENNPELLQMWVADMD-FLPVPEIKEAIINYGREHIFGYNY-----FNDDLYQAVIDWERKEHDY 115 (421)
T ss_dssp CCCCCTTTTBTTTGGGTTCTTCEECCSSCCC-SCCCHHHHHHHHHHHHHCCSSCBC-----CCHHHHHHHHHHHHHHHCC
T ss_pred cccccCCCCCccccccCCCCCeeecccCCCC-CCCCHHHHHHHHHHHhcCCcCCCC-----CCHHHHHHHHHHHHHHhCC
Confidence 4556788999999 66 8999999887543 337899999999999873221111 125677788888888877
Q ss_pred ---CCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC--------CHHHHHHHHHHhhh
Q 011567 169 ---TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN--------DMDSLRNTLERVTA 237 (483)
Q Consensus 169 ---~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~--------d~~~Le~~l~~~~~ 237 (483)
.+..++.++|++|+..++++++++||.|++..+.|.++...+...+.+++.++.+ |+++|++.+++.
T Consensus 116 ~~~~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~-- 193 (421)
T 3l8a_A 116 AVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDN-- 193 (421)
T ss_dssp CCCGGGEEEESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHT--
T ss_pred CCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhcc--
Confidence 2345566777889999999999999999999898888888888888888777643 889999888641
Q ss_pred hhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC--CceeEEEc
Q 011567 238 DNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV--DKIDIVTA 312 (483)
Q Consensus 238 ~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~--~~~Di~~~ 312 (483)
++++|+++++++++|.+.| |++|+++|++||++||+||+|+.+. .+|........+.+ .++++++.
T Consensus 194 -------~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~--~~g~~~~~~~~~~~~~~~~~i~~~ 264 (421)
T 3l8a_A 194 -------NVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLA--LFGNTHHSLNTLDASYKDFTIILS 264 (421)
T ss_dssp -------TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCB--CTTCCCCCGGGSCTTGGGTEEEEE
T ss_pred -------CCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccc--cCCCCCccHHHcCchhcCcEEEEE
Confidence 3678888999999998854 8999999999999999999998754 33443333333333 24567888
Q ss_pred cccccccCCC---ceeecc-HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccC
Q 011567 313 AMGHALATEG---GFCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDI 387 (483)
Q Consensus 313 s~~K~lg~~G---G~i~~~-~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~ 387 (483)
|++|++|..| |+++++ +++++.++.....+.+ .+.|++.++++.++++..++ .+++.++++++.+++.+.|++.
T Consensus 265 s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~-~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 343 (421)
T 3l8a_A 265 SATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQ-HEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEAK 343 (421)
T ss_dssp CSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eChhhccCchhheEeEEcCCHHHHHHHHHHHHhccc-CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999998555 888887 8888877654322222 24588888888888875332 2457788889999999999877
Q ss_pred CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHH
Q 011567 388 HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKA 467 (483)
Q Consensus 388 ~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~ 467 (483)
+++.+..+..+.+.++.+..... ...++.+.++++.||++.++...... .+..+||+++ +|+++|+++
T Consensus 344 ~~i~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~l~~~~gi~v~~g~~f~~~---~~~~iRi~~~--~~~~~i~~~ 411 (421)
T 3l8a_A 344 TKIKVMEPEGTYLVWLDFSAYAI-------AQPQLSEKLQNEAKVVLNDGAHFGKE---GKYFARLNVA--TPKNTVQEA 411 (421)
T ss_dssp CSCEEECCSBSSEEEEECGGGTC-------CTTHHHHHHHHTTCEECEEGGGGCGG---GTTEEEEECC--SCHHHHHHH
T ss_pred CCceEeCCCeeEEEEEeccccCC-------CHHHHHHHHHHhCCEEEECchhhCCC---CCCEEEEEec--CCHHHHHHH
Confidence 78888765555566687753110 01246676666679999886533210 0234999987 699999999
Q ss_pred HHHHHHHHH
Q 011567 468 CESLKRISA 476 (483)
Q Consensus 468 ~~~l~~~~~ 476 (483)
+++|+++++
T Consensus 412 l~~l~~~l~ 420 (421)
T 3l8a_A 412 LSRIISVFG 420 (421)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHh
Confidence 999998764
No 48
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=7.8e-32 Score=271.90 Aligned_cols=355 Identities=12% Similarity=0.031 Sum_probs=259.3
Q ss_pred CccccCCCCeEE-ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC----
Q 011567 94 PVLESAAGPHTI-ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG---- 168 (483)
Q Consensus 94 ~~i~~~~g~~~~-~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g---- 168 (483)
.+..+++|.++| .+|+++|||..++. .+..+|.+.+++.+++.+...+... ...+...++++.+++.+|
T Consensus 11 ~~~~~~~g~~~~d~~g~~~i~~~~~~~-~~~~~~~v~~a~~~~~~~~~~~y~~-----~~~~l~~~la~~l~~~~g~~~~ 84 (391)
T 3dzz_A 11 HVPKRQGNSIKWGVLKEKELPMWIAEM-DFKIAPEIMASMEEKLKVAAFGYES-----VPAEYYKAVADWEEIEHRARPK 84 (391)
T ss_dssp SCCCCCTTBTTTTTCCTTCEECCSSCC-SSCCCHHHHHHHHHHHTTCCCCCBC-----CCHHHHHHHHHHHHHHHSCCCC
T ss_pred hhccCCCCccceeccCCCceeccccCC-CCCCCHHHHHHHHHHHhcCcCCCCC-----CCHHHHHHHHHHHHHHhCCCCC
Confidence 556788999999 79999999998854 3337899999999999863222111 134567777888887777
Q ss_pred CCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC--------CCHHHHHHHHHHhhhhhh
Q 011567 169 TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--------NDMDSLRNTLERVTADNK 240 (483)
Q Consensus 169 ~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~--------~d~~~Le~~l~~~~~~~~ 240 (483)
.++.++.++|++++..+++++.++||.|+++.+.|.++...+...|.+++.++. .|+++|++.+++.
T Consensus 85 ~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~----- 159 (391)
T 3dzz_A 85 EDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATP----- 159 (391)
T ss_dssp GGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTST-----
T ss_pred HHHEEECCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhcc-----
Confidence 235566677799999999999999999999999999999999999999988876 5788888887531
Q ss_pred hccCccEEEEEecccCCCCCcc---ChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC--CceeEEEcccc
Q 011567 241 RAKKLRRYIVVEAVYQNSGQIA---PLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV--DKIDIVTAAMG 315 (483)
Q Consensus 241 ~~~~~~~~iv~e~v~~~~G~i~---~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~--~~~Di~~~s~~ 315 (483)
++++|+++++++++|.+. ++++|+++|++||+++|+||+|+.+..+ |........+.. .+.++++.|++
T Consensus 160 ----~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~d~~i~~~s~s 233 (391)
T 3dzz_A 160 ----SVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLT--DEDITPAFTVDWDAKNWVVSLISPS 233 (391)
T ss_dssp ----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCS--SCCCCCGGGSCTTTGGGEEEEECSH
T ss_pred ----CceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCC--CCCceehhhcCccccCcEEEEEeCh
Confidence 267778888899999994 4899999999999999999999876543 322222222221 22348899999
Q ss_pred ccccCCC---ceeecc-HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhcc-CCC
Q 011567 316 HALATEG---GFCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSD-IHG 389 (483)
Q Consensus 316 K~lg~~G---G~i~~~-~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~-~~~ 389 (483)
|++|..| ||++++ +++++.++.....+.+ .+.++..++++.++++..++ .++..++++++.+++.+.|++ +++
T Consensus 234 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 312 (391)
T 3dzz_A 234 KTFNLAALHAACAIIPNPDLRARAEESFFLAGI-GEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPE 312 (391)
T ss_dssp HHHTCTTTCCEEEECCSHHHHHHHHHHHHHHTC-SSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhccccchhheEEEECCHHHHHHHHHHHHhhcc-CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9998556 998886 8888877654222111 13466677777777765321 245788889999999999988 788
Q ss_pred ceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHH
Q 011567 390 LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACE 469 (483)
Q Consensus 390 ~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~ 469 (483)
+.+..+..+.++++.+.... ....++.+.+++++||.+.++...... .+..+|++++ +++++++++++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~gi~v~~g~~~~~~---~~~~iRis~~--~~~~~i~~~l~ 380 (391)
T 3dzz_A 313 VKVLDSNASYLAWVDISALG-------MNAEDFCKYLREKTGLIISAGNGYRGN---GHEFVRINLA--CPKELVIDGMQ 380 (391)
T ss_dssp SEECCCCBSSEEEEECGGGC-------SCHHHHHHHHHHHHCEECEESGGGCTT---GGGEEEEECC--SCHHHHHHHHH
T ss_pred cEEeccCceEEEEEehhhcC-------CCHHHHHHHHHHhCCEEEeCchhhCCC---CCCEEEEEec--CCHHHHHHHHH
Confidence 88876655666667774311 013356776665569999886543210 0234999987 69999999999
Q ss_pred HHHHHHHHH
Q 011567 470 SLKRISAVV 478 (483)
Q Consensus 470 ~l~~~~~~~ 478 (483)
+|+++++++
T Consensus 381 ~l~~~l~~~ 389 (391)
T 3dzz_A 381 RLKQGVLNL 389 (391)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHh
Confidence 999988653
No 49
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=3.6e-32 Score=273.12 Aligned_cols=345 Identities=16% Similarity=0.137 Sum_probs=251.5
Q ss_pred cccCCCCeEE-ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC------
Q 011567 96 LESAAGPHTI-ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG------ 168 (483)
Q Consensus 96 i~~~~g~~~~-~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g------ 168 (483)
..+++|.++| .+|+++|||.+++. .+..+|.+.+++.+++++...+. ++ .+ .++++.++++++
T Consensus 9 ~~~~~g~~~~d~~g~~~idl~~~~~-~~~~~~~v~~a~~~~~~~~~~~y-~~---~~-----~~lr~~la~~~~~~~~~~ 78 (377)
T 3fdb_A 9 DLRARNTMKWTRYGQGVLPLWVAES-DFSTCPAVLQAITDAVQREAFGY-QP---DG-----SLLSQATAEFYADRYGYQ 78 (377)
T ss_dssp HHHHTCCHHHHSSCTTSEECCSSCC-CSCCCHHHHHHHHHHHHTTCCSS-CC---SS-----CCHHHHHHHHHHHHHCCC
T ss_pred HhcCCCCceeeccCCCeeeecccCC-CCCCCHHHHHHHHHHHHcCCCCC-CC---CC-----HHHHHHHHHHHHHHhCCC
Confidence 4578999999 89999999999843 33368999999999998622211 11 12 345555555544
Q ss_pred --CCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC---CHHHHHHHHHHhhhhhhhcc
Q 011567 169 --TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN---DMDSLRNTLERVTADNKRAK 243 (483)
Q Consensus 169 --~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~---d~~~Le~~l~~~~~~~~~~~ 243 (483)
.++.+++++|++++..+++++.++||.|+++.+.|.++...++..|.+++.++.+ |+++|++.+++.
T Consensus 79 ~~~~~i~~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~l~~~l~~~-------- 150 (377)
T 3fdb_A 79 ARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATGGINLHDVEKGFQAG-------- 150 (377)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTSCCHHHHHHHHHTT--------
T ss_pred CCHHHEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCCCCHHHHHHHhccC--------
Confidence 3467777888999999999999999999999999999999999999999999886 889998888652
Q ss_pred CccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCC-CccccccCCCCCceeEEEcccccccc
Q 011567 244 KLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSG-RGLTEHCGVPVDKIDIVTAAMGHALA 319 (483)
Q Consensus 244 ~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G-~g~~~~~~v~~~~~Di~~~s~~K~lg 319 (483)
+++|++..+++++|.+.| +++|+++|++||+++|+||+|+.+..+ | ........+...+.+++++|++|++|
T Consensus 151 --~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~i~~~s~sK~~g 226 (377)
T 3fdb_A 151 --ARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFD--GQHTVAAGVSDTAASVCITITAPSKAWN 226 (377)
T ss_dssp --CCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSS--SCCCCGGGSCHHHHHHEEEEECSTTTTT
T ss_pred --CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcC--CCCCcccHHHccCCCcEEEEEeChHhcc
Confidence 456666666889999987 677888899999999999999875443 3 22222222221344688899999997
Q ss_pred CCC---ceee-ccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhcc-CCCceee
Q 011567 320 TEG---GFCT-GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSD-IHGLSIA 393 (483)
Q Consensus 320 ~~G---G~i~-~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~-~~~~~i~ 393 (483)
..| ||++ +++++++.++...... +.+.+++.++++.++++..++ ..+.+++++++.+++.+.|++ ++++.+.
T Consensus 227 ~~G~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 304 (377)
T 3fdb_A 227 IAGLKCAQIIFSNPSDAEHWQQLSPVI--KDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKIT 304 (377)
T ss_dssp CGGGCCEEEECCSHHHHHHHHHSCHHH--HCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEEC
T ss_pred CcchhheEEEeCCHHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEe
Confidence 555 8755 4788888876543222 234578888888888875322 245788889999999999988 7788887
Q ss_pred cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567 394 SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR 473 (483)
Q Consensus 394 ~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~ 473 (483)
.+..+.++++.+..... + .+++..+++++||.+.++..+... .+..+|++++. +++++++++++|++
T Consensus 305 ~~~~~~~~~~~~~~~~~----~----~~~~~~l~~~~gi~v~~g~~~~~~---~~~~~Ris~~~--~~e~i~~~l~~l~~ 371 (377)
T 3fdb_A 305 PMQATYLMWIDFRDTTI----E----GSPSEFFIEKAKVAMNDGAWFGED---GTGFCRLNFAT--SREVLEEAIDRMAK 371 (377)
T ss_dssp CCSBCSEEEEECTTSCC----C----SCHHHHHHHHHCEECEEGGGGCGG---GTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred cCCeeEEEEEECcccCC----C----HHHHHHHHHhCCEEecCChhccCC---CCCEEEEEeCC--CHHHHHHHHHHHHH
Confidence 66556666787754211 1 135666676669999887543221 12459999874 89999999999998
Q ss_pred HHHH
Q 011567 474 ISAV 477 (483)
Q Consensus 474 ~~~~ 477 (483)
++++
T Consensus 372 ~l~~ 375 (377)
T 3fdb_A 372 AVSH 375 (377)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 8754
No 50
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=7.3e-31 Score=264.02 Aligned_cols=352 Identities=12% Similarity=0.056 Sum_probs=246.3
Q ss_pred CCccccCCCCeEEE--CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC--
Q 011567 93 PPVLESAAGPHTII--SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG-- 168 (483)
Q Consensus 93 ~~~i~~~~g~~~~~--~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g-- 168 (483)
+.+..+++|.++|. +|+++|||.+++ .++..+|.+.+++.+++.+...+...+ ..+...++++.+++++|
T Consensus 6 ~~~~~~~~g~~~~d~~~~~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~~~y~~~-----~~~~~~~l~~~l~~~~g~~ 79 (383)
T 3kax_A 6 KTVNRRGTHSIKWDTYKNEELIHAWIAD-MDFEVPQPIQTALKKRIEHPIFGYTLP-----PENIGDIICNWTKKQYNWD 79 (383)
T ss_dssp -------------CCCSSSCCEECCCSS-CSSCCCHHHHHHHHHHHHSCCCCCCCC-----CTTHHHHHHHHHHHHHCCC
T ss_pred ceeeccCCCceeeeccCCCCeeeccccc-CCCCCCHHHHHHHHHHHhcCCCCCCCC-----CHHHHHHHHHHHHHHhCCC
Confidence 34567889999993 568999999885 344478999999999998632211111 35678888999998887
Q ss_pred --CCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC--------CCHHHHHHHHHHhhhh
Q 011567 169 --TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--------NDMDSLRNTLERVTAD 238 (483)
Q Consensus 169 --~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~--------~d~~~Le~~l~~~~~~ 238 (483)
.++.+++++|++++..+++++.++||.|+++.+.|.++...+...|.+++.++. .|+++|++.+. .
T Consensus 80 ~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~---~- 155 (383)
T 3kax_A 80 IQKEWIVFSAGIVPALSTSIQAFTKENESVLVQPPIYPPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQ---Q- 155 (383)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHCCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHT---T-
T ss_pred CChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccceecCCcEEEcHHHHHHHhC---c-
Confidence 235667788889999999999999999999999999999999999999988775 27888888872 2
Q ss_pred hhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC--CceeEEEcc
Q 011567 239 NKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV--DKIDIVTAA 313 (483)
Q Consensus 239 ~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~--~~~Di~~~s 313 (483)
++++|+++.+++++|.+.| +++|+++|++||+++|+||+|+.+..+ |........+.+ .+.+++++|
T Consensus 156 ------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~~i~~~s 227 (383)
T 3kax_A 156 ------GVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYA--DHTHTPFASLSEELAARTITCMA 227 (383)
T ss_dssp ------TCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCT--TCCCCCGGGSCHHHHTTEEEEEC
T ss_pred ------CCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccC--CCCceeHhhcCccccCcEEEEEE
Confidence 2567777888999999988 677777799999999999999875543 332222222222 134688899
Q ss_pred ccccccCCC---ceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhcc-C
Q 011567 314 MGHALATEG---GFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSD-I 387 (483)
Q Consensus 314 ~~K~lg~~G---G~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~-~ 387 (483)
++|++|..| ||+++ ++++++.++.....+.+ .+.++..++++.++++..++ .++.+++++++.+++.+.|++ +
T Consensus 228 ~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 306 (383)
T 3kax_A 228 PSKTFNIAGLQASIIIIPNEKLRQAFTSIQYRQGF-HGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACEYIKDHI 306 (383)
T ss_dssp SHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTC-CCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ChhhccCcchhheEEEeCCHHHHHHHHHHHhhccc-CCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999998555 88877 68888877654322222 24577777777777764221 245778888999999999987 6
Q ss_pred CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHH
Q 011567 388 HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKA 467 (483)
Q Consensus 388 ~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~ 467 (483)
+++.+..+..+.+.++.++.... ...++++.+++++||.+.++...... .+..+|++++ .++++++++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~~~~~---~~~~iRi~~~--~~~~~i~~~ 374 (383)
T 3kax_A 307 PTLSVMKPEGSFLLWIDCSALNL-------SQDERTKLLEEKGKIIVEPGEKYGLG---GEEHIGINIG--CPRSVLEEI 374 (383)
T ss_dssp TTCEECCCSBSSEEEEECGGGCC-------CHHHHHHHHHHTSCEECEESGGGCTT---CTTEEEEECS--SCHHHHHHH
T ss_pred CCceEecCCceEEEEEEccccCC-------CHHHHHHHHHhhCCEEeECchhhcCC---CCCeEEEEEc--CCHHHHHHH
Confidence 78888765455566677743210 13357776665679999986543211 1245999987 589999999
Q ss_pred HHHHHHHH
Q 011567 468 CESLKRIS 475 (483)
Q Consensus 468 ~~~l~~~~ 475 (483)
+++|++++
T Consensus 375 l~~l~~~l 382 (383)
T 3kax_A 375 LNRLRHTF 382 (383)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998875
No 51
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=3.2e-31 Score=266.09 Aligned_cols=333 Identities=20% Similarity=0.251 Sum_probs=246.6
Q ss_pred CCCccccCCCCeEE-ECCeeEEEeecC---CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567 92 EPPVLESAAGPHTI-ISGKEVVNFASA---NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (483)
Q Consensus 92 ~~~~i~~~~g~~~~-~~G~~~id~~s~---~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~ 167 (483)
.|+++++++|.+++ .+|+.|+||+++ +.+|| .+|.+.+++.+++++++..+ . .| ..+...+++++|++++
T Consensus 10 ~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~-~~~~v~~a~~~~~~~~~~~~--~--~y-~~~~~~~l~~~la~~~ 83 (375)
T 2eh6_A 10 LPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGH-AYPKLTEALKEQVEKLLHVS--N--LY-ENPWQEELAHKLVKHF 83 (375)
T ss_dssp EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCB-SCHHHHHHHHHHHHHCSCCC--T--TB-CCHHHHHHHHHHHHTS
T ss_pred CCccEEeeecCEEEeCCCCEEEEcCCcccccccCC-CCHHHHHHHHHHHHhccccC--c--cc-CCHHHHHHHHHHHhhc
Confidence 35678999999998 799999999987 45676 78999999999998864321 1 23 2356789999999999
Q ss_pred CC-CCEEEecccHHHHHhhhhh---hc---cCC-cEEEEc-CCchhHHHhHhhhcCC------------eEEEecCCCHH
Q 011567 168 GT-PDSILYSYGLSTMFSAIPC---FC---KKG-DLIVAD-EGVHWGIQNGLYLSRS------------TVVYFKHNDMD 226 (483)
Q Consensus 168 g~-e~~i~~~sG~~a~~~ai~~---~~---~~g-diI~~~-~~~h~s~~~g~~~s~~------------~v~~~~~~d~~ 226 (483)
|. ++.+++++|++|+..++++ ++ ++| |.|++. ..+|..........+. .+..++++|++
T Consensus 84 g~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 163 (375)
T 2eh6_A 84 WTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDID 163 (375)
T ss_dssp SSCEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTCHH
T ss_pred CCCCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCchHH
Confidence 98 6777789999999988864 45 566 655554 4567655544443322 26667778888
Q ss_pred HHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC----hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccC
Q 011567 227 SLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCG 301 (483)
Q Consensus 227 ~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~----L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~ 301 (483)
+|++.+++ ++++|+++++++++|.+.| +++|+++|++||+++|+||+|+. +|.++.+. .+.++
T Consensus 164 ~l~~~l~~----------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~--~~~~~~~~~~~~~~ 231 (375)
T 2eh6_A 164 SVYKLLDE----------ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTG--IGRTGEFYAYQHFN 231 (375)
T ss_dssp HHHTTCCT----------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTT--TTTTSSSSGGGGGT
T ss_pred HHHHHhcC----------CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccC--CCCCCcchhhhhcC
Confidence 88876642 3688999999999999988 99999999999999999999983 34444433 34455
Q ss_pred CCCCceeEEEccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 011567 302 VPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAI 379 (483)
Q Consensus 302 v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~ 379 (483)
..+ |++ |+||++++ ..|++++++++++.++....+..+ +.+++.++++.++++.++ +..++++++.++
T Consensus 232 ~~~---d~~--s~SK~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~ 301 (375)
T 2eh6_A 232 LKP---DVI--ALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTF--GGNPLACRAGTVVVDEVE---KLLPHVREVGNY 301 (375)
T ss_dssp CCC---SEE--EECGGGGTTSCCEEEEEEHHHHTTCCTTSCCCSS--TTCHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred CCC---CEE--EEcccccCCCCeEEEEEcHHHHhhhcCCCCCCCC--CCCHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 433 776 78899983 238888888888776543233333 447888888888888775 588899999999
Q ss_pred HHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCC
Q 011567 380 LRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAH 459 (483)
Q Consensus 380 l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~ 459 (483)
+.+.|++++. ... .+.++++++.++.+ ..++++.+++ +||.+.+.. +..+|++++..+
T Consensus 302 l~~~L~~~~~-~~~-~~~g~~~~~~~~~~----------~~~~~~~l~~-~gi~~~~~~---------~~~iRi~~~~~~ 359 (375)
T 2eh6_A 302 FKEKLKELGK-GKV-KGRGLMLGLELERE----------CKDYVLKALE-KGLLINCTA---------GKVLRFLPPLII 359 (375)
T ss_dssp HHHHHHHTTS-SEE-EEETTEEEEECSSC----------CHHHHHHHHH-TTEECEEET---------TTEEEECCCTTC
T ss_pred HHHHHHHHhc-CCc-eEEEEEEEEEEcCc----------HHHHHHHHHH-CCCEEecCC---------CCEEEEECCCCC
Confidence 9999988633 222 23578888887431 1246666554 699998642 244999999899
Q ss_pred CHHHHHHHHHHHHHH
Q 011567 460 SEADLVKACESLKRI 474 (483)
Q Consensus 460 t~edi~~~~~~l~~~ 474 (483)
|++|+++++++|+++
T Consensus 360 ~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 360 QKEHIDRAISVLREI 374 (375)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999875
No 52
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.98 E-value=1.5e-30 Score=264.24 Aligned_cols=349 Identities=15% Similarity=0.178 Sum_probs=248.5
Q ss_pred CeeEEEeecC--CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC----CCEEEecc
Q 011567 108 GKEVVNFASA--NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT----PDSILYSY 177 (483)
Q Consensus 108 G~~~id~~s~--~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~----e~~i~~~s 177 (483)
|+++|||+++ +..++ +++.+.+++.+++++.+. ... |+......++++.+++++ |. ++.++.++
T Consensus 33 g~~~idl~~g~~~~~~~-~~~~v~~a~~~~~~~~~~----~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g 106 (407)
T 2zc0_A 33 GVKLISLAAGDPDPELI-PRAVLGEIAKEVLEKEPK----SVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIG 106 (407)
T ss_dssp SCCCEECCSCCCCTTTS-CHHHHHHHHHHHHHHCGG----GGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESH
T ss_pred CCceEeCCCCCCCchhC-CHHHHHHHHHHHHhhccc----ccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecC
Confidence 6789999887 34555 678999999999987431 112 333333567777777777 72 34556677
Q ss_pred cHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEE-EEe
Q 011567 178 GLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYI-VVE 252 (483)
Q Consensus 178 G~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~i-v~e 252 (483)
|++|+..++++++++||.|+++.+.|.++...+...|.+++.++.+ |+++|++.++....+ . .++++| +++
T Consensus 107 ~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~---~-~~~~~v~~~~ 182 (407)
T 2zc0_A 107 GTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDNDGMRVDLLEEKIKELKAK---G-QKVKLIYTIP 182 (407)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHT---T-CCEEEEEECC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCCCCCCHHHHHHHHHhhhcc---c-CCceEEEECC
Confidence 7899999999999999999999999988888888899988887753 788898888632100 0 125565 567
Q ss_pred cccCCCCCccChH---HHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccC--CCceeec
Q 011567 253 AVYQNSGQIAPLD---ELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTG 327 (483)
Q Consensus 253 ~v~~~~G~i~~L~---~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~ 327 (483)
.+++++|.+.|++ +|+++|++||+++|+||+|+.+.++ |........+.+.+.+++++|++|++|+ .+||+++
T Consensus 183 ~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~ 260 (407)
T 2zc0_A 183 TGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYE--GGDIVPLKALDNEGRVIVAGTLSKVLGTGFRIGWIIA 260 (407)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSS--CSSCCCGGGGCSSCCEEEEEESTTTTCTTSCCEEEEC
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccC--CCCCCChhhcCCCCCEEEEcccccccCCCcceEEEec
Confidence 7888899999965 9999999999999999999987653 2322111222223346888999999983 2599999
Q ss_pred cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHHhhcc-CCCceeecCCCCCEEE
Q 011567 328 SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL----EENPDLITKLKKNTAILRTGLSD-IHGLSIASNPESPIVF 402 (483)
Q Consensus 328 ~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l----~~~~~~~~~l~~~~~~l~~~L~~-~~~~~i~~~~~~~i~~ 402 (483)
++++++.++.....+.++. +++.++++.++++.. ....+..++++++.+++.+.|++ .+++.+..+..+.+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~ 338 (407)
T 2zc0_A 261 EGEILKKVLMQKQPIDFCA--PAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVM 338 (407)
T ss_dssp CHHHHHHHHHHHTTTTSSS--CHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSEEE
T ss_pred CHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEEEE
Confidence 9999888776544444443 677777777777653 23345788888999999999976 4677665454567888
Q ss_pred EEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567 403 LILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 403 l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~ 480 (483)
+.++... + ..++.+.++++.||.+.+...+.... ..+..+|++++.. |++|+++++++|++++++++.
T Consensus 339 ~~~~~~~-----~---~~~l~~~l~~~~gi~v~~g~~~~~~~-~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~~ 406 (407)
T 2zc0_A 339 FFLPEGA-----D---GISFANELMEREGVVVVPGKPFYTDE-SGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEKFG 406 (407)
T ss_dssp EECSTTC-----C---HHHHHHHHHHHTCEECBCSGGGCSSS-CCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHHC-
T ss_pred EEcCCCC-----C---HHHHHHHHHHhCCeEEECchhccCCC-CCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHHhc
Confidence 8874311 1 23567766665599998765332110 0124599999876 899999999999999988754
No 53
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.98 E-value=1.8e-30 Score=261.92 Aligned_cols=350 Identities=11% Similarity=0.029 Sum_probs=255.3
Q ss_pred CccccCCCCeEE-ECC-----eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh
Q 011567 94 PVLESAAGPHTI-ISG-----KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL 167 (483)
Q Consensus 94 ~~i~~~~g~~~~-~~G-----~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~ 167 (483)
.+..+++|.++| .+| +.+|||.+++. ++..+|.+.+++.+++.+...+. + .+..+...++++.+++++
T Consensus 11 ~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y-~----~~~~~~~~~l~~~l~~~~ 84 (391)
T 4dq6_A 11 IVDRSNNFSSKWSEMEKKYGTNDLLPMWVADM-DFKAAPCIIDSLKNRLEQEIYGY-T----TRPDSYNESIVNWLYRRH 84 (391)
T ss_dssp CCCCTTTTBHHHHCHHHHHSCSCSEECCSSSC-SSCCCHHHHHHHHHHHTTCCCCC-B----CCCHHHHHHHHHHHHHHH
T ss_pred ccccccCCceeeeecccccCCCCceeccccCC-CCCCCHHHHHHHHHHHhCCCCCC-C----CCCHHHHHHHHHHHHHHh
Confidence 345678899999 554 45699998864 44478999999999997632211 1 134678889999999998
Q ss_pred C----CCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC---------CHHHHHHHHHH
Q 011567 168 G----TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN---------DMDSLRNTLER 234 (483)
Q Consensus 168 g----~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~---------d~~~Le~~l~~ 234 (483)
| .++.+++++|++++..+++++.++||.|+++.+.|.++...+...|.+++.++.+ |+++|++.+++
T Consensus 85 g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 164 (391)
T 4dq6_A 85 NWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD 164 (391)
T ss_dssp CCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT
T ss_pred CCCCcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc
Confidence 8 3467777888999999999999999999999999999999999999999888765 77777776643
Q ss_pred hhhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC--CceeE
Q 011567 235 VTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV--DKIDI 309 (483)
Q Consensus 235 ~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~--~~~Di 309 (483)
+++|+++.+++++|.+.| +++|+++|++||+++|+||+|+.+..+ |........+.+ .+.++
T Consensus 165 -----------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~~i 231 (391)
T 4dq6_A 165 -----------VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILK--KHKHIPMASISKEFEKNTI 231 (391)
T ss_dssp -----------EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCT--TCCCCCGGGSCHHHHHTEE
T ss_pred -----------CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccC--CCCccCHHHcCccccCcEE
Confidence 456777778889999955 899999999999999999999876543 333322223322 13358
Q ss_pred EEccccccccCCC---ceeeccH-HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhh
Q 011567 310 VTAAMGHALATEG---GFCTGSA-RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGL 384 (483)
Q Consensus 310 ~~~s~~K~lg~~G---G~i~~~~-~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L 384 (483)
+++|++|++|..| ||+++++ ++++.++.....+. ..+.++..++++.++++..++ .++..++++++.+++.+.|
T Consensus 232 ~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 310 (391)
T 4dq6_A 232 TCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRID-IKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYI 310 (391)
T ss_dssp EEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTT-CCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999997555 8888765 78877654422222 224577888888888775322 2457788889999999999
Q ss_pred cc-CCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHH
Q 011567 385 SD-IHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEAD 463 (483)
Q Consensus 385 ~~-~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~ed 463 (483)
++ ++++.+..+..+.+.++.++.... ...++.+.++++.||.+.++...... .+..+|++++ +++++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~~~~~---~~~~iRis~~--~~~~~ 378 (391)
T 4dq6_A 311 NENMPKLKVRKPEGTYLLWVDFSALGL-------SDEELESILVQKGKVALNQGNSFGIG---GSGYQRINLA--CPRSM 378 (391)
T ss_dssp HHHCTTSEECCCSBSSEEEEECGGGCC-------CHHHHHHHHHHTTCEECEEGGGGCTT---CTTEEEEECC--SCHHH
T ss_pred HhhCCCCEecCCCccEEEEEEhhhcCC-------CHHHHHHHHHHhCCEEeeCchhhCCC---CCCeEEEEEc--CCHHH
Confidence 87 678888765555666677753110 12356776655449999886543211 1245999987 69999
Q ss_pred HHHHHHHHHHHH
Q 011567 464 LVKACESLKRIS 475 (483)
Q Consensus 464 i~~~~~~l~~~~ 475 (483)
+++++++|++++
T Consensus 379 i~~~l~~l~~~l 390 (391)
T 4dq6_A 379 LEEALIRIKNAI 390 (391)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 54
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.98 E-value=6.3e-31 Score=263.69 Aligned_cols=330 Identities=15% Similarity=0.147 Sum_probs=241.3
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC--------CCCEEEeccc
Q 011567 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--------TPDSILYSYG 178 (483)
Q Consensus 107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g--------~e~~i~~~sG 178 (483)
+|++++||.++.+ ++..+|.+.+++.+++++... .|+......++++.++++++ .++.+++++|
T Consensus 27 ~g~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~-------~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~ 98 (370)
T 2z61_A 27 EGKKVIHLEIGEP-DFNTPKPIVDEGIKSLKEGKT-------HYTDSRGILELREKISELYKDKYKADIIPDNIIITGGS 98 (370)
T ss_dssp TTCCCEECCCCSC-SSCCCHHHHHHHHHHHHTTCC-------SCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSH
T ss_pred cCCCEEEccCCCC-CCCCCHHHHHHHHHHHHcCcc-------CCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCCh
Confidence 3678999998844 333468999999999876211 12222224566677777653 2467777889
Q ss_pred HHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567 179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS 258 (483)
Q Consensus 179 ~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~ 258 (483)
++++..+++++.++||.|+++.+.|.++...+...|.+++.++ .|+++|++.+++ ++++|+++++++++
T Consensus 99 ~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~-~d~~~l~~~l~~----------~~~~v~~~~p~npt 167 (370)
T 2z61_A 99 SLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD-FTVESLEEALSD----------KTKAIIINSPSNPL 167 (370)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC-SSHHHHHHHCCS----------SEEEEEEESSCTTT
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC-CCHHHHHHhccc----------CceEEEEcCCCCCc
Confidence 9999999999999999999999999999999999999998888 788888877643 25677778888899
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHH
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQ 335 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~ 335 (483)
|.+.|++ |+++|++||+++|+||+|+.+.++.....+....+ ..+.|++++|++|++|..| ||+++++++++.+
T Consensus 168 G~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~ 244 (370)
T 2z61_A 168 GEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDE--NLEKTILINGFSKLYAMTGWRIGYVISNDEIIEAI 244 (370)
T ss_dssp CCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCT--TCSSEEEEEESTTTTTCGGGCCEEEECCHHHHHHH
T ss_pred CcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccC--CCCcEEEEecChhccCCccceEEEEEECHHHHHHH
Confidence 9999999 99999999999999999998765421112212111 2356899999999998555 9999999998887
Q ss_pred HhcCCceeecCCCcHHHHHHHHHHHHH-Hh-cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCch
Q 011567 336 RLSSSGYVFSASLPPYLASAAITAIDV-LE-ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMK 413 (483)
Q Consensus 336 ~~~~~~~~fs~~~~p~~~aaa~~al~~-l~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~ 413 (483)
+.....+.+ +.+++.++++.++++. .+ ..++.+++++++.+++.+.|+++ |+++..+..+.++++.++.
T Consensus 245 ~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~------ 315 (370)
T 2z61_A 245 LKLQQNLFI--SAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWEVNNPIGAYYVFPNIGE------ 315 (370)
T ss_dssp HHHHHHHTS--SSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCBTTEECCBCSS------
T ss_pred HHHHhhccc--CCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCcceEEEEecCC------
Confidence 654333323 4577777777777764 22 22457788889999999999887 8777654445566666532
Q ss_pred hhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567 414 NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 476 (483)
Q Consensus 414 ~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~ 476 (483)
...++.+.+++++||.+.+...+... .+..+|++++ ++++++++++++|+++++
T Consensus 316 ----~~~~~~~~l~~~~gi~v~~g~~f~~~---~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 316 ----DGREFAYKLLKEKFVALTPGIGFGSK---GKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp ----CHHHHHHHHHHHHCEECEEGGGGCGG---GSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred ----CHHHHHHHHHHhCCEEEeCchhhCCC---CCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 12356776664569999886543210 1245999998 699999999999998764
No 55
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.98 E-value=1.4e-30 Score=262.68 Aligned_cols=340 Identities=14% Similarity=0.175 Sum_probs=239.4
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----CCEEEecccHHHH
Q 011567 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PDSILYSYGLSTM 182 (483)
Q Consensus 107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e~~i~~~sG~~a~ 182 (483)
+|++++||.++.+ .+..+|.+.+++.+++++...+.+ ...|..++...+++.+.+.+|. ++.+++++|++|+
T Consensus 28 ~g~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y~---~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~ 103 (388)
T 1j32_A 28 EGIDVCSFSAGEP-DFNTPKHIVEAAKAALEQGKTRYG---PAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI 103 (388)
T ss_dssp TTCCCEECCCSSC-SSCCCHHHHHHHHHHHHTTCCSCC---CTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred cCCCEEECCCCCC-CCCCCHHHHHHHHHHHhcCCCCCC---CCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHH
Confidence 5788999999854 333568999999999876211111 1123334444444444444452 3456667789999
Q ss_pred HhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEeccc
Q 011567 183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVY 255 (483)
Q Consensus 183 ~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~ 255 (483)
..+++++.++||.|+++.+.|.++...++..|.+++.++.+ |+++|++.+++ ++++|++++++
T Consensus 104 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----------~~~~v~~~~p~ 173 (388)
T 1j32_A 104 FNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP----------KTKLLVFNTPS 173 (388)
T ss_dssp HHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT----------TEEEEEEESSC
T ss_pred HHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCc----------CceEEEEeCCC
Confidence 99999999999999999999999988888899998888753 56667666532 26777888888
Q ss_pred CCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC--CceeEEEccccccccCCC---ceeec
Q 011567 256 QNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV--DKIDIVTAAMGHALATEG---GFCTG 327 (483)
Q Consensus 256 ~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~--~~~Di~~~s~~K~lg~~G---G~i~~ 327 (483)
+++|.+.| +++|+++|++||+++|+||+|+.+.++ |........+.+ .+.|++++|+||++|..| ||+++
T Consensus 174 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~ 251 (388)
T 1j32_A 174 NPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYD--DAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAG 251 (388)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCT--TCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEEC
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccC--CCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEe
Confidence 88999976 899999999999999999999986653 222211222221 235899999999998555 99999
Q ss_pred cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEec
Q 011567 328 SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILE 406 (483)
Q Consensus 328 ~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~ 406 (483)
++++++.++.......+ +.+++.+.++.++++..++ .++.+++++++.+++.+.|++++++.+..+..+.++++.+.
T Consensus 252 ~~~~~~~l~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~ 329 (388)
T 1j32_A 252 PVPLVKAATKIQGHSTS--NVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIA 329 (388)
T ss_dssp CHHHHHHHHHHHHTTTC--SCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCG
T ss_pred CHHHHHHHHHHHhhccc--CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEEEEEecC
Confidence 99988877654322223 3467777777777763221 23577888899999999998877887765444555555553
Q ss_pred CCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
.. + ....++++.+++++||.+.+...... +..+|++++ +|++++++++++|+++++++
T Consensus 330 ~~-~------~~~~~~~~~l~~~~gi~v~~g~~~~~-----~~~iRis~~--~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 330 KT-G------RSSLDFCSELLDQHQVATVPGAAFGA-----DDCIRLSYA--TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp GG-T------CCHHHHHHHHHHHHCEECEEGGGGTC-----TTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred CC-C------CCHHHHHHHHHHhCCEEEeChhhhCC-----CCcEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 20 0 01235677666546999988653321 345999986 69999999999999998775
No 56
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.98 E-value=9.1e-30 Score=257.80 Aligned_cols=342 Identities=13% Similarity=0.150 Sum_probs=245.2
Q ss_pred ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCc--ccChHHHHHHHHHHHhhhCC---CCEEEecccHH
Q 011567 106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGF--YGTIDVHLDCEARIAKFLGT---PDSILYSYGLS 180 (483)
Q Consensus 106 ~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~--~g~~~~~~~l~~~La~~~g~---e~~i~~~sG~~ 180 (483)
.+|+++++|..+.. +. .+|.+.+++.++++++......+... |...+...+++++|++++|. ++.++.++|++
T Consensus 19 ~~g~~~i~l~~~~~-~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~ 96 (406)
T 1kmj_A 19 VNGLPLAYLDSAAS-AQ-KPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTE 96 (406)
T ss_dssp ETTEECEECCTTTC-CC-CCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHH
T ss_pred cCCCceEEecCCcc-CC-CCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhH
Confidence 35777676666543 34 67899999999998753221111111 23456788999999999998 34566688889
Q ss_pred HHHhhhhhh----ccCCcEEEEcCCchhHHHhH----hhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccE
Q 011567 181 TMFSAIPCF----CKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRR 247 (483)
Q Consensus 181 a~~~ai~~~----~~~gdiI~~~~~~h~s~~~g----~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~ 247 (483)
|+..+++++ .++||.|++..+.|.+...+ +...|.+++.++.+ |+++|++.+++ +++
T Consensus 97 a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~----------~~~ 166 (406)
T 1kmj_A 97 GINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDE----------KTR 166 (406)
T ss_dssp HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCT----------TEE
T ss_pred HHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhcc----------CCe
Confidence 999999999 78999999888888765433 45668888888764 67888877642 268
Q ss_pred EEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceee
Q 011567 248 YIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCT 326 (483)
Q Consensus 248 ~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~ 326 (483)
+|+++++++++|.+.|+++|+++|++||+++|+||+|+.|... ..+ . . .++|++++|++|++|+.| |+++
T Consensus 167 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~---~~~-~--~---~~~d~~~~s~~K~~g~~G~G~~~ 237 (406)
T 1kmj_A 167 LLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHP---VDV-Q--A---LDCDFYVFSGHKLYGPTGIGILY 237 (406)
T ss_dssp EEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSC---CCH-H--H---HTCSEEEEEGGGTTSCTTCEEEE
T ss_pred EEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCC---Ccc-c--c---cCCCEEEEEchhccCCCCcEEEE
Confidence 8999999999999999999999999999999999999875431 111 1 1 134899999999999877 9999
Q ss_pred ccHHHHHHHHhcCCc-------------------eeecCCCcHHHHHHHH-HHHHHHhc--CcHHHHHHHHHHHHHHHhh
Q 011567 327 GSARVVDHQRLSSSG-------------------YVFSASLPPYLASAAI-TAIDVLEE--NPDLITKLKKNTAILRTGL 384 (483)
Q Consensus 327 ~~~~~~~~~~~~~~~-------------------~~fs~~~~p~~~aaa~-~al~~l~~--~~~~~~~l~~~~~~l~~~L 384 (483)
+++++++.++....+ +.|..+.+++.+.++. ++++.+.+ .+++.++++++.+++.+.|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 317 (406)
T 1kmj_A 238 VKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQL 317 (406)
T ss_dssp ECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred EeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 999998876543221 1122233444444444 77887753 2467888999999999999
Q ss_pred ccCCCceeecCC-CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc---cCCCCCceEEEccCCCC
Q 011567 385 SDIHGLSIASNP-ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD---KCRLPVGIRLFVSAAHS 460 (483)
Q Consensus 385 ~~~~~~~i~~~~-~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~---~~~~~~~lRi~~~~~~t 460 (483)
++++++++..+. .++++.+.++.. + ..++.+. |.++||.+.++.....+ ....+..+|++++..+|
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~-l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t 387 (406)
T 1kmj_A 318 ESVPDLTLYGPQNRLGVIAFNLGKH------H---AYDVGSF-LDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNT 387 (406)
T ss_dssp TTSTTEEEESCTTCCSEEEEEETTC------C---HHHHHHH-HHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCC
T ss_pred hcCCCeEEecCCCcCCEEEEEECCC------C---HHHHHHH-HhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCC
Confidence 988788877542 677888777421 1 2245654 45669999876431100 00113459999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011567 461 EADLVKACESLKRISAVV 478 (483)
Q Consensus 461 ~edi~~~~~~l~~~~~~~ 478 (483)
++|+++++++|+++++.+
T Consensus 388 ~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 388 HEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999988754
No 57
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.98 E-value=6.8e-30 Score=254.39 Aligned_cols=332 Identities=15% Similarity=0.104 Sum_probs=250.4
Q ss_pred CCCeEE-ECCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC--CCEEEe
Q 011567 100 AGPHTI-ISGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--PDSILY 175 (483)
Q Consensus 100 ~g~~~~-~~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~--e~~i~~ 175 (483)
+|.+++ .+|+++|||+++ +.++ .+|++.+++.+++++.. .| ..+...++++++++++|. ++.+++
T Consensus 6 ~~~~~~~~~~~~~i~l~~~~~~~~--~~~~v~~a~~~~~~~~~--------~y-~~~~~~~l~~~la~~~~~~~~~i~~~ 74 (354)
T 3ly1_A 6 ESAAFTAPSTDNPIRINFNENPLG--MSPKAQAAARDAVVKAN--------RY-AKNEILMLGNKLAAHHQVEAPSILLT 74 (354)
T ss_dssp ---CCCCCCSSSCEECSSCCCSSC--CCHHHHHHHHHTGGGTT--------SC-CHHHHHHHHHHHHHHTTSCGGGEEEE
T ss_pred ccccccCCCCCceEEccCCCCCCC--CCHHHHHHHHHHHhhCc--------CC-CCCchHHHHHHHHHHhCCChHHEEEe
Confidence 344555 678999999998 4443 67999999999887521 22 235678999999999995 456777
Q ss_pred cccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567 176 SYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIV 250 (483)
Q Consensus 176 ~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv 250 (483)
++|++++..+++++.++||.|+++.+.|.++...++..|.+++.++.+ |+++|++.+++.. ++++|+
T Consensus 75 ~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~--------~~~~v~ 146 (354)
T 3ly1_A 75 AGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYS--------GPSIVY 146 (354)
T ss_dssp SHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCS--------SCEEEE
T ss_pred CChHHHHHHHHHHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCC--------CCCEEE
Confidence 888899999999999999999999999999999999999999999887 8899998886411 267777
Q ss_pred EecccCCCCCccChHHHHHHHHH--cCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---cee
Q 011567 251 VEAVYQNSGQIAPLDELIRLKEK--YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFC 325 (483)
Q Consensus 251 ~e~v~~~~G~i~~L~~l~~l~~k--~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i 325 (483)
++.+++++|.+.|.+++.++++. ||+++|+||+|+.+..+..+.......+.. .+.+++++|++|++|..| ||+
T Consensus 147 l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~g~~G~r~G~~ 225 (354)
T 3ly1_A 147 LVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQG-AENIILLKTFSKIHAMAGMRVGYA 225 (354)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTT-CSSEEEEEESSSTTCCGGGCCEEE
T ss_pred EeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhc-CCCEEEEeeChhhccChhhhheee
Confidence 78888999999998888888777 999999999998765443222332222211 144788999999998555 999
Q ss_pred eccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEe
Q 011567 326 TGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLIL 405 (483)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l 405 (483)
++++++++.++..... .+.++..++++.++++......+.+++++++.+++.+.|+++ ++.+. ++.++++++.+
T Consensus 226 ~~~~~~~~~~~~~~~~----~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~-~~~~~~~~~~~ 299 (354)
T 3ly1_A 226 VAHPTVIALMGRYVAG----EKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL-KLPYL-PSEGNFVFHQL 299 (354)
T ss_dssp ECCHHHHHHHGGGTTC----SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEEC
T ss_pred ecCHHHHHHHHHhcCC----CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCCceEEEEEC
Confidence 9999999988766544 245788888887777644333467888889999999999886 77766 34677888877
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
+. + ..++.+.+. ++||.+. ..++. .+..+|++++ |++|+++++++|++++++
T Consensus 300 ~~-------~---~~~~~~~l~-~~gi~v~-g~~~~-----~~~~iRis~~---~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 300 VV-------P---LKDYQTHMA-DAGVLIG-RAFPP-----ADNWCRISLG---TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp SS-------C---HHHHHHHHH-HTTEECC-CCCTT-----CTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred CC-------C---HHHHHHHHH-HCCEEEe-ecCCC-----CCCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence 43 1 235666655 4699987 44432 1345999975 899999999999988764
No 58
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.97 E-value=6.8e-30 Score=260.03 Aligned_cols=342 Identities=16% Similarity=0.188 Sum_probs=249.5
Q ss_pred ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccC--hHHHHHHHHHHHhhhCC---CCEEEecccHH
Q 011567 106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGT--IDVHLDCEARIAKFLGT---PDSILYSYGLS 180 (483)
Q Consensus 106 ~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~--~~~~~~l~~~La~~~g~---e~~i~~~sG~~ 180 (483)
.+|+++++|.++.+ +. .++.+.+++.++++++......+...|+. .+...++++.|++++|. ++.+++++|++
T Consensus 24 ~~g~~~i~l~~~~~-~~-~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~ 101 (420)
T 1t3i_A 24 INGHPLVYLDNAAT-SQ-KPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATE 101 (420)
T ss_dssp ETTEECEECBTTTC-CC-CCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHH
T ss_pred cCCCceEEecCCcc-CC-CCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHH
Confidence 57888999998865 34 67999999999998854322211223443 46678999999999998 56777789999
Q ss_pred HHHhhhhhh----ccCCcEEEEcCCchhHH----HhHhhhcCCeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccE
Q 011567 181 TMFSAIPCF----CKKGDLIVADEGVHWGI----QNGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRR 247 (483)
Q Consensus 181 a~~~ai~~~----~~~gdiI~~~~~~h~s~----~~g~~~s~~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~ 247 (483)
|+..+++++ .++||.|++..+.|.+. ...+...|.+++.++. .|+++|++.+++ +++
T Consensus 102 a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~----------~~~ 171 (420)
T 1t3i_A 102 AINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSE----------KTK 171 (420)
T ss_dssp HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCT----------TEE
T ss_pred HHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCC----------Cce
Confidence 999999999 88999999888888774 3445567888888875 367777766632 267
Q ss_pred EEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceee
Q 011567 248 YIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCT 326 (483)
Q Consensus 248 ~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~ 326 (483)
+|+++++++++|.+.|+++|.++|++||+++|+||+|++|.... .. ..+ ++|++++|++|.+|+.| |+++
T Consensus 172 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~---~~-~~~-----~~di~~~s~sK~~~~~g~G~~~ 242 (420)
T 1t3i_A 172 LVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPL---DV-QLI-----DCDWLVASGHKMCAPTGIGFLY 242 (420)
T ss_dssp EEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCC---CH-HHH-----TCSEEEEEGGGTTSCTTCEEEE
T ss_pred EEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccC---ch-hhc-----CCCEEEEehhhhcCCCceEEEE
Confidence 88999999999999999999999999999999999998764321 11 112 24899999999888665 8999
Q ss_pred ccHHHHHHHHhcCCc------------------eeecCCCcHHHHHHHH-HHHHHHhc--CcHHHHHHHHHHHHHHHhhc
Q 011567 327 GSARVVDHQRLSSSG------------------YVFSASLPPYLASAAI-TAIDVLEE--NPDLITKLKKNTAILRTGLS 385 (483)
Q Consensus 327 ~~~~~~~~~~~~~~~------------------~~fs~~~~p~~~aaa~-~al~~l~~--~~~~~~~l~~~~~~l~~~L~ 385 (483)
+++++++.++....+ +.|..+.+++.+.++. ++++.+.+ .+++.++.+++.+++.+.|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 322 (420)
T 1t3i_A 243 GKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLG 322 (420)
T ss_dssp ECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred EchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999998877543221 1132233444444444 47777654 25678889999999999999
Q ss_pred cCCCceeecCC-----CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc---cCCCCCceEEEccC
Q 011567 386 DIHGLSIASNP-----ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD---KCRLPVGIRLFVSA 457 (483)
Q Consensus 386 ~~~~~~i~~~~-----~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~---~~~~~~~lRi~~~~ 457 (483)
+++++++..+. .++++.+.++.. + ..++.+. |.++||.+.+...+..+ ....+..+|++++.
T Consensus 323 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~-l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~ 392 (420)
T 1t3i_A 323 QIPQLRLYGPNPKHGDRAALASFNVAGL------H---ASDVATM-VDQDGIAIRSGHHCTQPLHRLFDASGSARASLYF 392 (420)
T ss_dssp TCTTEEEESCCGGGSCBCSEEEEEETTB------C---HHHHHHH-HHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCT
T ss_pred hCCCeEEeCCCccccccCCEEEEEECCC------C---HHHHHHH-HHHCCeEEeeccccchHHHHhcCCCCeEEEecCC
Confidence 88788877553 377888877421 1 2245554 55679999876422110 00013459999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 011567 458 AHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 458 ~~t~edi~~~~~~l~~~~~~~ 478 (483)
.+|++|+++++++|+++++++
T Consensus 393 ~~~~~~i~~~~~~l~~~~~~~ 413 (420)
T 1t3i_A 393 YNTKEEIDLFLQSLQATIRFF 413 (420)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 899999999999999998765
No 59
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.97 E-value=2.8e-30 Score=261.55 Aligned_cols=352 Identities=12% Similarity=0.058 Sum_probs=251.0
Q ss_pred ccccCCCCeEE-ECCe-------eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh
Q 011567 95 VLESAAGPHTI-ISGK-------EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 166 (483)
Q Consensus 95 ~i~~~~g~~~~-~~G~-------~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~ 166 (483)
+..+++|.++| .+|+ +++||.++. .++..+|.+.+++.+++++... .|+.. ..++++.++++
T Consensus 9 ~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~~-------~y~~~--~~~l~~~la~~ 78 (399)
T 1c7n_A 9 ISRKNLGSLKWDLMYSQNPEVGNEVVPLSVAD-MEFKNPPELIEGLKKYLDETVL-------GYTGP--TEEYKKTVKKW 78 (399)
T ss_dssp CCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSS-CSSCCCHHHHHHHHHHHHHCCC-------SSBCC--CHHHHHHHHHH
T ss_pred ccccCCCccccccchhhccccCCCceeeeecC-CCCCCCHHHHHHHHHHHhcCCC-------CCCCC--cHHHHHHHHHH
Confidence 34578999999 6774 799998874 4555679999999999875211 12221 45566666665
Q ss_pred ----hC----CCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC--------CCHHHHHH
Q 011567 167 ----LG----TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--------NDMDSLRN 230 (483)
Q Consensus 167 ----~g----~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~--------~d~~~Le~ 230 (483)
+| .++.++.++|++|+..++++++++||.|+++.+.|.++...+...|.+++.++. .|+++|++
T Consensus 79 l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~ 158 (399)
T 1c7n_A 79 MKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEK 158 (399)
T ss_dssp HHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHH
T ss_pred HHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHH
Confidence 46 235666688889999999999999999999999999998888888988887765 36788887
Q ss_pred HHHHhhhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC--C
Q 011567 231 TLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV--D 305 (483)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~--~ 305 (483)
.+++. ++++|+++.+++++|.+.| +++|+++|++||+++|+||+|+.+.++ |........+.+ .
T Consensus 159 ~l~~~---------~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~ 227 (399)
T 1c7n_A 159 LSKDK---------NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMP--GYEHTVFQSIDEQLA 227 (399)
T ss_dssp HHTCT---------TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCT--TCCCCCGGGSCHHHH
T ss_pred HhccC---------CCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccC--CCCcccHHHcCcccc
Confidence 77521 2567777888889999999 999999999999999999999976543 332222222221 2
Q ss_pred ceeEEEccccccccCCC---ceeecc-HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHH
Q 011567 306 KIDIVTAAMGHALATEG---GFCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAIL 380 (483)
Q Consensus 306 ~~Di~~~s~~K~lg~~G---G~i~~~-~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l 380 (483)
+.+++++|++|++|..| ||++++ +++++.++.....+.++ +.+++.++++.++++... ..++..++++++.+++
T Consensus 228 ~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l 306 (399)
T 1c7n_A 228 DKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGM-PFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIV 306 (399)
T ss_dssp TTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCC-CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhcccC-CCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 34788899999998555 898886 66888776543333332 347777777777876422 1245677888899999
Q ss_pred HHhhcc-CCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCC
Q 011567 381 RTGLSD-IHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAH 459 (483)
Q Consensus 381 ~~~L~~-~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~ 459 (483)
.+.|++ ++++.+..+..+.++++.++.. + .+ ..++.+.+++++||.+.+...+... .+..+||+++.
T Consensus 307 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~---~~~~~~~l~~~~gi~v~~g~~~~~~---~~~~iRis~~~-- 374 (399)
T 1c7n_A 307 KDFFEVNHPEIKAPLIEGTYLQWIDFRAL-K---MD---HKAMEEFMIHKAQIFFDEGYIFGDG---GIGFERINLAA-- 374 (399)
T ss_dssp HHHHHHHCTTSBCCCCSBSSEEEEECGGG-C---CC---HHHHHHHHHHTTCCCCEEGGGGCGG---GTTEEEEECCS--
T ss_pred HHHHHhhCCCCeEecCCceEEEEEEcccC-C---CC---HHHHHHHHHHhCCEEEeCccccCCC---CCCeEEEEecc--
Confidence 999987 7788776544455556777431 0 01 2356776655679999876543210 12459999975
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 011567 460 SEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 460 t~edi~~~~~~l~~~~~~~~~ 480 (483)
++++++++++.|+++++++.+
T Consensus 375 ~~~~l~~~l~~l~~~l~~~~~ 395 (399)
T 1c7n_A 375 PSSVIQESLERLNKALKDLKN 395 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999987643
No 60
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.97 E-value=1.4e-29 Score=254.48 Aligned_cols=332 Identities=12% Similarity=0.111 Sum_probs=240.6
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CCC-----CEEEecc
Q 011567 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GTP-----DSILYSY 177 (483)
Q Consensus 107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~e-----~~i~~~s 177 (483)
+|+++|||+++.+ .+..+|.+.+++.+++++... ..|+......++++.+++++ |.+ +.++.++
T Consensus 23 ~g~~~idl~~~~~-~~~~~~~v~~a~~~~~~~~~~------~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g 95 (376)
T 2dou_A 23 RGVGLIDLSIGST-DLPPPEAPLKALAEALNDPTT------YGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIG 95 (376)
T ss_dssp TTCCCEECSSCCC-CCCCCHHHHHHHHHHTTCGGG------SSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESS
T ss_pred cCCCEEeccCCCC-CCCCCHHHHHHHHHHHhCCCc------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCC
Confidence 4778999999843 343579999999998865211 13444456778888888887 753 4556677
Q ss_pred cHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567 178 GLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVE 252 (483)
Q Consensus 178 G~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e 252 (483)
|++++..++++++++||.|+++.+.|.++...++..|.+++.++. .|+++|++.++. ++++|+++
T Consensus 96 ~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~----------~~~~v~l~ 165 (376)
T 2dou_A 96 SQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVWR----------EAKVLLLN 165 (376)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECBCTTSSBCGGGSCHHHHH----------HEEEEEEC
T ss_pred cHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhcc----------CceEEEEC
Confidence 789999999999999999999999998988888888999888875 367888887742 25677777
Q ss_pred cccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceee
Q 011567 253 AVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCT 326 (483)
Q Consensus 253 ~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~ 326 (483)
.+++++|.+.| +++|+++|++||+++|+||+|+.+.++.....+....+. .+.+++++|++|++|..| ||++
T Consensus 166 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~r~G~~~ 243 (376)
T 2dou_A 166 YPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGA--KERVVELFSLSKSYNLAGFRLGFAL 243 (376)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTG--GGTEEEEEEHHHHHTCGGGCCEEEE
T ss_pred CCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCC--CCcEEEEecchhhcCChhheeEEEe
Confidence 77888999988 788999999999999999999976653212223332222 234788899999998555 9999
Q ss_pred ccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEe
Q 011567 327 GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLIL 405 (483)
Q Consensus 327 ~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l 405 (483)
+++++++.++.....+.+ +.++..++++.++++..+ ..++.+++++++.+++.+.|+++ +.+..+..+.++++.+
T Consensus 244 ~~~~~~~~l~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~ 319 (376)
T 2dou_A 244 GSEEALARLERVKGVIDF--NQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV--LSLLPPRATMYLWGRL 319 (376)
T ss_dssp ECHHHHHHHHHHHHHHCC--CSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSSEEEEEC
T ss_pred cCHHHHHHHHHHHHhccc--CCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeEEEEEEC
Confidence 999998887654333333 346777777777776422 12356778888999999999875 6665443456777887
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567 406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS 475 (483)
Q Consensus 406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~ 475 (483)
+... + ..++++.++++ ||.+.+...+... .+..+|++++. +++++++++++|++++
T Consensus 320 ~~~~-----~---~~~~~~~l~~~-gi~v~~g~~f~~~---~~~~~Ris~~~--~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 320 PEGV-----D---DLEFGLRLVER-GVALAPGRGFGPG---GKGFVRIALVR--PLEELLEAAKRIREAL 375 (376)
T ss_dssp CTTC-----C---HHHHHHHHHHT-TEECEEGGGGCGG---GTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred CCCC-----C---HHHHHHHHHHC-CEEEcCchhhCCC---CCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 4311 1 23567766665 9999886543210 12459999874 8999999999998764
No 61
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=5.6e-30 Score=258.73 Aligned_cols=328 Identities=17% Similarity=0.204 Sum_probs=236.8
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC----CCEEEeccc
Q 011567 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT----PDSILYSYG 178 (483)
Q Consensus 107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~----e~~i~~~sG 178 (483)
.|++++||.++.+ .+..+|.+.+++.+++++...+ |+..+...++++.+++++ |. ++.+++++|
T Consensus 39 ~g~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~-------y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~ 110 (389)
T 1o4s_A 39 KGEDVINLTAGEP-DFPTPEPVVEEAVRFLQKGEVK-------YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGA 110 (389)
T ss_dssp TTCCCEECCCSSC-SSCCCHHHHHHHHHHHTTCCCC-------CCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHH
T ss_pred cCCCEEEccCCCC-CCCCCHHHHHHHHHHHhcCCCC-------CCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCH
Confidence 4678999998844 2334689999999998763221 222222355666666665 63 356677888
Q ss_pred HHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567 179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVV 251 (483)
Q Consensus 179 ~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~ 251 (483)
++++..+++++.++||.|+++.+.|.++...++..|.+++.++.+ |+++|++.+++ ++++|++
T Consensus 111 t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----------~~~~v~~ 180 (389)
T 1o4s_A 111 KQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG----------KTKAVLI 180 (389)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT----------TEEEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc----------CceEEEE
Confidence 899999999999999999999999999999899999998888754 56666655532 2577788
Q ss_pred ecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---cee
Q 011567 252 EAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFC 325 (483)
Q Consensus 252 e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i 325 (483)
+++++++|.+.| +++|+++|++||+++|+||+|+.+.++.....+....+. .+.|++++|++|++|..| ||+
T Consensus 181 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~r~G~l 258 (389)
T 1o4s_A 181 NSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEG--FDRIVYINGFSKSHSMTGWRVGYL 258 (389)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSS--STTEEEEEESTTTTTCGGGCCEEE
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCC--CCcEEEEeechhhcCCcccceEEE
Confidence 888889999988 999999999999999999999986653211122222111 345899999999998555 999
Q ss_pred eccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEe
Q 011567 326 TGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLIL 405 (483)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l 405 (483)
++++++++.++.....+.+ +.+++.+.++.++++.. .+++.++++++.+++.+.|+++ |+++..+..+.++++.+
T Consensus 259 ~~~~~~~~~l~~~~~~~~~--~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~ 333 (389)
T 1o4s_A 259 ISSEKVATAVSKIQSHTTS--CINTVAQYAALKALEVD--NSYMVQTFKERKNFVVERLKKM-GVKFVEPEGAFYLFFKV 333 (389)
T ss_dssp ECCHHHHHHHHHHHHHHTC--SCCHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSBSSEEEEEC
T ss_pred EeCHHHHHHHHHHhhhccc--CCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHhc-CCeeecCCcceEEEEeC
Confidence 9999988877654333333 34677776666666432 4567889999999999999887 87776544455677776
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567 406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 476 (483)
Q Consensus 406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~ 476 (483)
+ . + ..++.+.+++++||.+.+...+.. ++.+|++++ .++++++++++.|+++++
T Consensus 334 ~--~-----~---~~~l~~~l~~~~gi~v~~g~~f~~-----~~~~Ris~~--~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 334 R--G-----D---DVKFCERLLEEKKVALVPGSAFLK-----PGFVRLSFA--TSIERLTEALDRIEDFLN 387 (389)
T ss_dssp S--S-----C---HHHHHHHHHHHHCEECEEGGGGTC-----TTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred C--C-----C---HHHHHHHHHHHCCEEEeCchhcCC-----CCeEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 3 1 1 235677666456999987654321 245999988 399999999999988763
No 62
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.97 E-value=6.2e-29 Score=250.97 Aligned_cols=348 Identities=14% Similarity=0.074 Sum_probs=234.1
Q ss_pred cccCCCCeEE-ECCe-----eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHH-HHHHHHhhh-
Q 011567 96 LESAAGPHTI-ISGK-----EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLD-CEARIAKFL- 167 (483)
Q Consensus 96 i~~~~g~~~~-~~G~-----~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~-l~~~La~~~- 167 (483)
-.+++|+++| .+|+ ++|||.++.+ ++..+|.+.+++.+++++... .|+.. ..+ +++.+++++
T Consensus 9 ~~~~~~~~~~d~~~~~~~~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~-------~y~~~--~~~~lr~~la~~l~ 78 (390)
T 1d2f_A 9 DRHGTWCTQWDYVADRFGTADLLPFTISDM-DFATAPCIIEALNQRLMHGVF-------GYSRW--KNDEFLAAIAHWFS 78 (390)
T ss_dssp ---------------------CEECCSSSC-SSCCCHHHHHHHHHHHTTCCC-------CCCCS--CCHHHHHHHHHHHH
T ss_pred cccCCCccchhhhccccCCCCeeEeeecCC-CCCCCHHHHHHHHHHHhCCCC-------CCCCC--ChHHHHHHHHHHHH
Confidence 4578899999 6886 7999988743 444679999999999875211 12211 334 666666654
Q ss_pred ---C----CCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC--------CCHHHHHHHH
Q 011567 168 ---G----TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--------NDMDSLRNTL 232 (483)
Q Consensus 168 ---g----~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~--------~d~~~Le~~l 232 (483)
| .++.++.++|++++..++++++++||.|+++.+.|.++...+...|.+++.++. .|+++|++.+
T Consensus 79 ~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l 158 (390)
T 1d2f_A 79 TQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVL 158 (390)
T ss_dssp HHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHH
T ss_pred HhcCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHh
Confidence 5 235566677789999999999999999999999998988888888988887764 4788888877
Q ss_pred HHhhhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567 233 ERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI 309 (483)
Q Consensus 233 ~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di 309 (483)
++. ++++|++..+++++|.+.| +++|+++|++||+++|+||+|+.+.++ |........+.++-.|.
T Consensus 159 ~~~---------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~d~ 227 (390)
T 1d2f_A 159 AKP---------ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWG--EQPHIPWSNVARGDWAL 227 (390)
T ss_dssp TST---------TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCS--SSCCCCGGGTCCSSEEE
T ss_pred ccC---------CCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccC--CCCCcCHHHcchhhHhh
Confidence 431 2566666677888999988 899999999999999999999976543 33333333343221266
Q ss_pred EEccccccccCCC---ceeec-cHHHHHHHHhcCC-ceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHh
Q 011567 310 VTAAMGHALATEG---GFCTG-SARVVDHQRLSSS-GYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTG 383 (483)
Q Consensus 310 ~~~s~~K~lg~~G---G~i~~-~~~~~~~~~~~~~-~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~ 383 (483)
++|+||++|..| ||+++ ++++++.++.... .+.|+ +.+++.++++.++++..++ .++.+++++++.+++.+.
T Consensus 228 -~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 305 (390)
T 1d2f_A 228 -LTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLS-SPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADK 305 (390)
T ss_dssp -EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCC-SCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccC-CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 789999998555 88887 4788877655433 23332 3477777777777774221 235677888899999999
Q ss_pred hcc-CCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHH
Q 011567 384 LSD-IHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEA 462 (483)
Q Consensus 384 L~~-~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~e 462 (483)
|++ ++++.+..+..+.++++.++... .+ ..++.+.+++++||.+.+...+.. ..+..+||+++. +++
T Consensus 306 L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~l~~~l~~~~gi~v~~g~~f~~---~~~~~~Ris~~~--~~~ 373 (390)
T 1d2f_A 306 MNAAFPELNWQIPQSTYLAWLDLRPLN----ID---DNALQKALIEQEKVAIMPGYTYGE---EGRGFVRLNAGC--PRS 373 (390)
T ss_dssp HHHHCSSCCCCCCSBCSEEEEECGGGC----CC---HHHHHHHHHHTTCEECEEGGGGCG---GGTTEEEEECCS--CHH
T ss_pred HHhhCCCCEEecCCccEEEEEEccccC----CC---HHHHHHHHHHHcCEEeeCccccCC---CCCCeEEEEecC--CHH
Confidence 987 67877664434455677774310 01 235677666467999988654321 012459999986 689
Q ss_pred HHHHHHHHHHHHHHHH
Q 011567 463 DLVKACESLKRISAVV 478 (483)
Q Consensus 463 di~~~~~~l~~~~~~~ 478 (483)
+++++++.|++++++.
T Consensus 374 ~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 374 KLEKGVAGLINAIRAV 389 (390)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999988764
No 63
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.97 E-value=1.7e-29 Score=258.42 Aligned_cols=342 Identities=13% Similarity=0.124 Sum_probs=249.2
Q ss_pred CCeeEEEeecCCCC---CCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC-------CCCEEEec
Q 011567 107 SGKEVVNFASANYL---GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG-------TPDSILYS 176 (483)
Q Consensus 107 ~G~~~id~~s~~~l---G~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g-------~e~~i~~~ 176 (483)
+||++|||..+++. .+..+|.+.+++.+++++.... .|+......++++.++++++ .++.++++
T Consensus 52 ~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~ 125 (427)
T 3dyd_A 52 PNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYN------GYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTS 125 (427)
T ss_dssp TTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSS------SCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEES
T ss_pred CCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCC------CCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEec
Confidence 57899999998653 2446799999999999874221 23333345789999999987 34667778
Q ss_pred ccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEE
Q 011567 177 YGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYI 249 (483)
Q Consensus 177 sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~i 249 (483)
+|++|+..+++++.++||.|+++.+.|..+...+...|.+++.++.+ |+++|++.+++ .+++|
T Consensus 126 g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~----------~~~~v 195 (427)
T 3dyd_A 126 GCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDE----------KTACL 195 (427)
T ss_dssp SHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCT----------TEEEE
T ss_pred CcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhcc----------CCCEE
Confidence 88999999999999999999999999999888899999988887653 56666655532 25667
Q ss_pred EEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---c
Q 011567 250 VVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---G 323 (483)
Q Consensus 250 v~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G 323 (483)
++..+++++|.+.| +++|+++|++||+++|+||+|+.+.++ |........+..+...++++|+||+++..| |
T Consensus 196 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~--g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG 273 (427)
T 3dyd_A 196 IVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFS--DCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLG 273 (427)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCS--SCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCE
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccC--CCcCccHHHhCCCCcEEEEeeccccCCCcCcceE
Confidence 77777889999999 999999999999999999999875543 333322222222223577899999987666 8
Q ss_pred eeecc-------HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCCceeec
Q 011567 324 FCTGS-------ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIAS 394 (483)
Q Consensus 324 ~i~~~-------~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~ 394 (483)
|++++ +++++.+...... . .+.+++.++++.++++... ...+..++++++.+++.+.|++++++.+..
T Consensus 274 ~~~~~~~~~~~~~~i~~~l~~~~~~-~--~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 350 (427)
T 3dyd_A 274 WILIHDRRDIFGNEIRDGLVKLSQR-I--LGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVR 350 (427)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-H--CCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEC
T ss_pred EEEecCcchhhHHHHHHHHHHHHhc-c--CCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecC
Confidence 88876 4677665443211 2 2457888888888887422 224578888899999999999888888766
Q ss_pred CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567 395 NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 474 (483)
Q Consensus 395 ~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~ 474 (483)
+..+.++++.+...... +.....+++..+++++||++.++..+.. +..+||++. +++++|++++++|+++
T Consensus 351 p~~g~~~~~~l~~~~~~---~~~~~~~~~~~l~~~~gV~v~~g~~~~~-----~~~iRis~~--~~~e~i~~~l~~l~~~ 420 (427)
T 3dyd_A 351 PSGAMYLMVGIEMEHFP---EFENDVEFTERLVAEQSVHCLPATCFEY-----PNFIRVVIT--VPEVMMLEACSRIQEF 420 (427)
T ss_dssp CSBTTEEEEEECGGGCT---TCSSHHHHHHHHHHHHCEECEEGGGGTC-----TTEEEEESC--SCHHHHHHHHHHHHHH
T ss_pred CCeeEEEEEecCHhhcC---CCCCHHHHHHHHHHHCCEEEECCcccCC-----CCeEEEEEC--CCHHHHHHHHHHHHHH
Confidence 66778888877421100 0001235677776667999998754432 345999975 7999999999999999
Q ss_pred HHHHH
Q 011567 475 SAVVL 479 (483)
Q Consensus 475 ~~~~~ 479 (483)
+++..
T Consensus 421 l~~~~ 425 (427)
T 3dyd_A 421 CEQHY 425 (427)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 88753
No 64
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.97 E-value=1e-29 Score=256.87 Aligned_cols=333 Identities=15% Similarity=0.110 Sum_probs=234.3
Q ss_pred ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----C----CCCEEEecc
Q 011567 106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G----TPDSILYSY 177 (483)
Q Consensus 106 ~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g----~e~~i~~~s 177 (483)
.+|+++|||.++.. .+..+|.+.+++.+++++...+ |+......++++.+++++ | .++.+++++
T Consensus 28 ~~g~~~i~l~~g~~-~~~~~~~v~~a~~~~~~~~~~~-------y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g 99 (391)
T 3h14_A 28 EAGRRIIHMEVGQP-GTGAPRGAVEALAKSLETDALG-------YTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPG 99 (391)
T ss_dssp HTTCCCEECCCSSC-SSCSCHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESS
T ss_pred hcCCCeEEccCCCC-CCCCCHHHHHHHHHHHhcCCCC-------CCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecC
Confidence 36889999999842 3334788999999988762221 221111345556666654 3 246677788
Q ss_pred cHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567 178 GLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIV 250 (483)
Q Consensus 178 G~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv 250 (483)
|++|+..+++++.++||.|+++.+.|.++...++..|.+++.++.+ |+++|++. + +++|+
T Consensus 100 ~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~------~-------~~~v~ 166 (391)
T 3h14_A 100 SSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL------D-------LAGLM 166 (391)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS------C-------CSEEE
T ss_pred hHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc------C-------CeEEE
Confidence 8999999999999999999999999999999999999999888765 55555433 1 56777
Q ss_pred EecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ce
Q 011567 251 VEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GF 324 (483)
Q Consensus 251 ~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~ 324 (483)
++.+++++|.+.| +++|+++|++||+++|+||+|+.+.++.......+ . .+.+++++|++|++|..| ||
T Consensus 167 i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~---~--~~~~i~~~s~sK~~g~~G~r~G~ 241 (391)
T 3h14_A 167 VASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALE---L--TDECYVINSFSKYFSMTGWRVGW 241 (391)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGG---T--CSSSEEEEESSSTTCCTTSCCEE
T ss_pred ECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhh---c--CCCEEEEEechhccCCccceeEE
Confidence 7788899999998 89999999999999999999987665433222222 2 233788899999998656 99
Q ss_pred eeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCcee-ecCCCCCEEEE
Q 011567 325 CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSI-ASNPESPIVFL 403 (483)
Q Consensus 325 i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i-~~~~~~~i~~l 403 (483)
+++++++++.++.....+.+ +.++..++++.++++..+...+.+++++++.+++.+.|+++ ++.. ..+..+.++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~ 318 (391)
T 3h14_A 242 MVVPEDQVRVVERIAQNMFI--CAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKA-GFTRIAPPDGAFYVYA 318 (391)
T ss_dssp EECCGGGHHHHHHHHHHTTC--CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCBCCCCBTTEEEE
T ss_pred EEeCHHHHHHHHHHHhhhcc--CCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc-CCCcccCCCeeEEEEE
Confidence 99999998887654333333 44677777777777622222457788888899999999876 4443 33334567777
Q ss_pred EecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 404 ILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 404 ~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
.+..... ...++++.++++.||.+.++..+... ..+..+|++++. +++++++++++|++++++.
T Consensus 319 ~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~~~~~--~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~~ 382 (391)
T 3h14_A 319 DVSDLTD-------DSRAFAAEILEKAGVAVTPGLDFDPE--RGAGTLRFSYAR--ATADIEEGLDRLEAFMQAR 382 (391)
T ss_dssp ECTTTCS-------CHHHHHHHHHHHHCEECEEGGGTCTT--TGGGEEEEECCS--CHHHHHHHHHHHHHHHHHC
T ss_pred ecCccCC-------CHHHHHHHHHHHCCEEEcCchhhCCC--CCCCeEEEEecC--CHHHHHHHHHHHHHHHHHh
Confidence 7743111 12356777676669999987544321 012359999876 8999999999999998764
No 65
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.97 E-value=1.7e-29 Score=259.91 Aligned_cols=348 Identities=15% Similarity=0.206 Sum_probs=246.1
Q ss_pred CeeEEEeecCC--CCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC---CCEEEeccc
Q 011567 108 GKEVVNFASAN--YLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT---PDSILYSYG 178 (483)
Q Consensus 108 G~~~id~~s~~--~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~---e~~i~~~sG 178 (483)
++++|||+++. ..++ +++.+.+++.+++++.+.. ...|+......+|++.|++++ |. ++.+++++|
T Consensus 75 ~~~~i~l~~g~p~~~~~-p~~~v~~a~~~~l~~~~~~----~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~ 149 (448)
T 3aow_A 75 TSDIISLAGGLPNPKTF-PKEIIRDILVEIMEKYADK----ALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGS 149 (448)
T ss_dssp TSSSEECCCCCCCGGGS-CHHHHHHHHHHHHHHSHHH----HHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSH
T ss_pred CCCcEeCCCCCCCchhC-CHHHHHHHHHHHHHhhhHH----HhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcH
Confidence 45689999873 3334 6788999999988763200 001222223456777777777 85 345555777
Q ss_pred HHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEE-EEec
Q 011567 179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYI-VVEA 253 (483)
Q Consensus 179 ~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~i-v~e~ 253 (483)
++++..++++++++||.|+++.+.|.++...+...|.+++.++.+ |+++|++.++....+ . .++++| ++..
T Consensus 150 ~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~L~~~l~~~~~~---~-~~~k~v~~~~~ 225 (448)
T 3aow_A 150 QQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQ---G-KKVKVVYTVPT 225 (448)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHT---T-CCEEEEEECCS
T ss_pred HHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCCCCCHHHHHHHHhhhhcc---C-CCCeEEEECCC
Confidence 899999999999999999999999999999999999998888753 788999888621100 0 135676 4566
Q ss_pred ccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeec
Q 011567 254 VYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTG 327 (483)
Q Consensus 254 v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~ 327 (483)
.++++|.+.| +++|+++|++||+++|+||+|+.+.++ |........+++.+.+++++|+||+++ .| ||+++
T Consensus 226 ~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~--g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v~~ 302 (448)
T 3aow_A 226 FQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYS--GNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWMVG 302 (448)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCS--SCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEEEEE
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCC--CCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEEEEe
Confidence 7788999988 679999999999999999999987653 333222233333456888999999998 55 99999
Q ss_pred cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHhhcc-CC-CceeecCCCCCEEE
Q 011567 328 SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL---EENPDLITKLKKNTAILRTGLSD-IH-GLSIASNPESPIVF 402 (483)
Q Consensus 328 ~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l---~~~~~~~~~l~~~~~~l~~~L~~-~~-~~~i~~~~~~~i~~ 402 (483)
++++++.++.....+.++ .+++..+++.++|+.. +...++++.++++.+++.+.|++ ++ ++.+..+..+.+++
T Consensus 303 ~~~l~~~l~~~~~~~~~~--~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~ 380 (448)
T 3aow_A 303 DPGIIRKMEIAKQSTDLC--TNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIW 380 (448)
T ss_dssp CHHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEE
T ss_pred CHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEE
Confidence 999998876543333333 3677777777777642 11234677777888999999976 45 67776555678888
Q ss_pred EEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567 403 LILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 403 l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~ 480 (483)
+.++... + ..+++..++++ ||.+.++..+.... ..+..+|++++. .|+++|++++++|++++++.++
T Consensus 381 v~~~~~~-----~---~~~l~~~l~~~-gV~v~pg~~f~~~~-~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~~~~~ 447 (448)
T 3aow_A 381 VTLPDGI-----D---SKKMLERAIKK-GVAYVPGEAFYAHR-DVKNTMRLNFTY-VDEDKIMEGIKRLAETIKEELK 447 (448)
T ss_dssp EECSTTC-----C---HHHHHHHHHHT-TEECEEGGGGSTTC-CCCSEEEEECSS-SCTHHHHHHHHHHHHHHHHHHC
T ss_pred EEcCCCC-----C---HHHHHHHHHHC-CcEEEcchhhcCCC-CCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 8885311 1 23567776665 99998875332110 012459999876 4899999999999999988764
No 66
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=6.6e-30 Score=259.94 Aligned_cols=336 Identities=13% Similarity=0.121 Sum_probs=238.8
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC--------CCEEEeccc
Q 011567 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--------PDSILYSYG 178 (483)
Q Consensus 107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~--------e~~i~~~sG 178 (483)
+|++++||.++.+ ++..+|.+.+++ +++++... .|+..+...++++.++++++. ++.+++++|
T Consensus 41 ~g~~~i~l~~~~~-~~~~~~~v~~a~-~~l~~~~~-------~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~ 111 (409)
T 2gb3_A 41 RGVRIHHLNIGQP-DLKTPEVFFERI-YENKPEVV-------YYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGG 111 (409)
T ss_dssp TTCEEEECSSCCC-CSCCCTHHHHHH-HHTCCSSC-------CCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHH
T ss_pred cCCCEEeccCCCC-CCCCCHHHHHHH-HHHhcCCC-------CCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCH
Confidence 5788999999855 444568999999 88865211 122222235666777766531 467777889
Q ss_pred HHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCC------HHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567 179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHND------MDSLRNTLERVTADNKRAKKLRRYIVVE 252 (483)
Q Consensus 179 ~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d------~~~Le~~l~~~~~~~~~~~~~~~~iv~e 252 (483)
++|+..+++++.++||.|+++.+.|.++...++..|.+++.++.++ +++|++.+++ ++++|+++
T Consensus 112 t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~l~~----------~~~~v~~~ 181 (409)
T 2gb3_A 112 SEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINE----------RTKGIVLS 181 (409)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCT----------TEEEEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCccHHHHHHhhCc----------CCeEEEEC
Confidence 9999999999999999999999999999999999999998888653 4445444421 26777888
Q ss_pred cccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceee
Q 011567 253 AVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCT 326 (483)
Q Consensus 253 ~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~ 326 (483)
++++++|.+.| +++|+++|++||+++|+||+|+.+.++....++ ..++ .+.|++++|++|++|..| ||++
T Consensus 182 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~--~~~~--~~~~i~~~s~sK~~g~~G~r~G~~~ 257 (409)
T 2gb3_A 182 NPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA--LSIE--SDKVVVIDSVSKKFSACGARVGCLI 257 (409)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG--GGSC--CTTEEEEEESTTTTTCGGGCCEEEE
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc--cccC--CCCEEEEecchhccCCccceEEEEE
Confidence 88888999876 899999999999999999999986653211121 1122 245999999999998555 9999
Q ss_pred ccH-HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhccCCCcee-ecCCCCCEEEE
Q 011567 327 GSA-RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSI-ASNPESPIVFL 403 (483)
Q Consensus 327 ~~~-~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i-~~~~~~~i~~l 403 (483)
+++ ++++.++.....+. +.+++.++++.++++... ..+++.++++++.+++.+.|+++ |+.+ ..+..+.++++
T Consensus 258 ~~~~~l~~~l~~~~~~~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~ 333 (409)
T 2gb3_A 258 TRNEELISHAMKLAQGRL---APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH-GLKRFTKPSGAFYITA 333 (409)
T ss_dssp CSCHHHHHHHHHHHHHSC---CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCSBSSEEEE
T ss_pred ECcHHHHHHHHHHHhccC---CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCeeEEEEE
Confidence 988 88887765433322 457777777777774321 12356788888999999999887 8777 54444666777
Q ss_pred EecCCCCCchhhHHHHHHHHHHHHHh-----CCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 404 ILEKSTGSMKNDLQLLEDIADWALKE-----DGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 404 ~l~~~~~~~~~~~~~~~~i~~~~l~~-----~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
.+... + ..++.+.++++ .||.+.+...........+..+|++++ +|++++++++++|+++++++
T Consensus 334 ~~~~~------~---~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~ 402 (409)
T 2gb3_A 334 ELPVE------D---AEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMF 402 (409)
T ss_dssp ECSSS------C---HHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred EeCCC------C---HHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHh
Confidence 76410 1 23566665554 399998764322100011345999988 89999999999999999876
Q ss_pred Hh
Q 011567 479 LR 480 (483)
Q Consensus 479 ~~ 480 (483)
..
T Consensus 403 ~~ 404 (409)
T 2gb3_A 403 CS 404 (409)
T ss_dssp HC
T ss_pred hh
Confidence 54
No 67
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.97 E-value=3.1e-29 Score=253.01 Aligned_cols=333 Identities=15% Similarity=0.192 Sum_probs=238.3
Q ss_pred eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC----CC-EEEecccHH
Q 011567 110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT----PD-SILYSYGLS 180 (483)
Q Consensus 110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~----e~-~i~~~sG~~ 180 (483)
+++||.++.. .+..+|.+.+++.+++++...+ |+......++++.+++++ |. ++ .+++++|++
T Consensus 27 ~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~-------y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~ 98 (389)
T 1gd9_A 27 DVISLGIGEP-DFDTPQHIKEYAKEALDKGLTH-------YGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQ 98 (389)
T ss_dssp SCEECCCCSC-SSCCCHHHHHHHHHHHHTTCCS-------CCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTH
T ss_pred CeEecCCCCC-CCCCCHHHHHHHHHHHhCCCCC-------CCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHH
Confidence 5799988743 3335789999999999763211 222122345566666655 72 45 777788999
Q ss_pred HHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEec
Q 011567 181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEA 253 (483)
Q Consensus 181 a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~ 253 (483)
++..++++++++||.|+++.+.|.++...++..|.+++.++.+ |+++|++.+++ ++++|++++
T Consensus 99 a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----------~~~~v~~~~ 168 (389)
T 1gd9_A 99 AFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD----------KTRALIINS 168 (389)
T ss_dssp HHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCT----------TEEEEEEES
T ss_pred HHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCc----------CceEEEEEC
Confidence 9999999999999999999999999888888889988877642 56777766532 256777788
Q ss_pred ccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCC-CCccccccCCCCCceeEEEccccccccCCC---ceee
Q 011567 254 VYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRS-GRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCT 326 (483)
Q Consensus 254 v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~-G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~ 326 (483)
+++++|.+.| +++|+++|++||+++|+||+|+.+.++.. ...+....+. .+.|++++|++|++|..| ||++
T Consensus 169 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~r~G~~~ 246 (389)
T 1gd9_A 169 PCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGM--FERTITVNGFSKTFAMTGWRLGFVA 246 (389)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTC--GGGEEEEEESTTTTTCGGGCCEEEE
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCC--CCCEEEEecChhhcCCcccceEEEE
Confidence 8888999986 89999999999999999999998765421 1222222121 356899999999998666 9999
Q ss_pred ccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEE
Q 011567 327 GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE---NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFL 403 (483)
Q Consensus 327 ~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~---~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l 403 (483)
+++++++.++.....+.+ +.++..++++.++++.... .++++++++++.+++.+.|+++ |+++..+..+.++++
T Consensus 247 ~~~~~~~~l~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 323 (389)
T 1gd9_A 247 APSWIIERMVKFQMYNAT--CPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFP 323 (389)
T ss_dssp CCHHHHHHHHHHHTTTTC--SCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTTEECC
T ss_pred ECHHHHHHHHHHHhhhcc--CCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEE
Confidence 999998887654443333 3467777777777764332 2456788889999999999887 877765444556666
Q ss_pred EecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 404 ILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 404 ~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
.++.. + ....++++.+++++||.+.+...+... .+..+|++++. +++++++++++|++++++
T Consensus 324 ~~~~~-~------~~~~~~~~~l~~~~gi~v~~g~~~~~~---~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 324 RIRDT-G------LTSKKFSELMLKEARVAVVPGSAFGKA---GEGYVRISYAT--AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp BCGGG-T------CCHHHHHHHHHHHTCEECEEGGGGCGG---GTTBEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred eccCC-C------CCHHHHHHHHHHhCCEEEeCchhhCCC---CCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 66320 0 012356776664679999886543210 12459999874 999999999999998865
No 68
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=1.2e-29 Score=259.28 Aligned_cols=351 Identities=16% Similarity=0.196 Sum_probs=247.2
Q ss_pred CeeEEEeecC--CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC-----CCEEEec
Q 011567 108 GKEVVNFASA--NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT-----PDSILYS 176 (483)
Q Consensus 108 G~~~id~~s~--~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~-----e~~i~~~ 176 (483)
++++|||+++ ++.++ +++.+.+++.+++++.+... ..|+......++++.+++++ |. ++.++.+
T Consensus 42 ~~~~idl~~g~~~~~~~-~~~~v~~a~~~~~~~~~~~~----~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~ 116 (425)
T 1vp4_A 42 DKDAISFGGGVPDPETF-PRKELAEIAKEIIEKEYHYT----LQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTV 116 (425)
T ss_dssp STTCEECCCCSCCGGGS-CHHHHHHHHHHHHHHSHHHH----TSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEE
T ss_pred CCCceeCCCCCCCcccC-CHHHHHHHHHHHHhhcchhh----cCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEec
Confidence 3568999887 45566 67899999999987632000 01222222356666666666 73 2455557
Q ss_pred ccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC----CCHHHHHHHHHHhhhhhhhccCccEEE-EE
Q 011567 177 YGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH----NDMDSLRNTLERVTADNKRAKKLRRYI-VV 251 (483)
Q Consensus 177 sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~----~d~~~Le~~l~~~~~~~~~~~~~~~~i-v~ 251 (483)
+|++++..++++++++||.|+++.+.|.++...+...|.+++.++. .|+++|++.+++.... . ...++++| ++
T Consensus 117 G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~-~-~~~~~~~v~~~ 194 (425)
T 1vp4_A 117 GSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKN-G-KIKQVKFIYVV 194 (425)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHT-T-CGGGEEEEEEE
T ss_pred cHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCCCCCHHHHHHHHHhhhhc-c-cCCCceEEEEC
Confidence 7789999999999999999999999999998889888998887775 3788999888653110 0 00125666 56
Q ss_pred ecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---cee
Q 011567 252 EAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFC 325 (483)
Q Consensus 252 e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i 325 (483)
+.+++++|.+.| +++|+++|++||+++|+||+|+.+.++ |.+......+.+.+.+++++|++|++| .| ||+
T Consensus 195 ~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~ 271 (425)
T 1vp4_A 195 SNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYE--GETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMV 271 (425)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCS--SCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEE
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCC--CCCCcCHHHhCCCCCEEEEeccccccc-cccceEEE
Confidence 778888999988 688999999999999999999986653 222211111222345788999999999 66 999
Q ss_pred eccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHhhccC-C---CceeecCCCC
Q 011567 326 TGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL---EENPDLITKLKKNTAILRTGLSDI-H---GLSIASNPES 398 (483)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l---~~~~~~~~~l~~~~~~l~~~L~~~-~---~~~i~~~~~~ 398 (483)
++++++++.++.....+.++ .+++.++++.++++.. +...+.+++++++.+++.+.|++. + ++.+..+..+
T Consensus 272 ~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g 349 (425)
T 1vp4_A 272 AGSKEFIRKIVQAKQSADLC--SPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGG 349 (425)
T ss_dssp ECCHHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBS
T ss_pred eeCHHHHHHHHHHhhhhcCC--CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCcc
Confidence 99999988876543343343 3778888888888763 223467788888999999999763 4 5777655567
Q ss_pred CEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 399 PIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 399 ~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
+++++.++.... ..++++.++++ ||.+.+...+.... ..+..+||+++.. |++|+++++++|+++++++
T Consensus 350 ~~~~~~~~~~~~--------~~~l~~~l~~~-gi~v~~g~~f~~~~-~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~~ 418 (425)
T 1vp4_A 350 LFIWLTLPEGFD--------TWEMFEYAKRK-KVFYVPGRVFKVYD-EPSPSMRLSFCLP-PDEKIVEGIKRLREVVLEY 418 (425)
T ss_dssp SEEEEECCTTCC--------TTTTHHHHHHH-TEECEEGGGGCTTC-CCCSEEEEECSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCC--------HHHHHHHHHHC-CCEEECchhhcCCC-CCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 788888853111 12456666666 99998865332110 0124599999874 9999999999999999887
Q ss_pred Hhc
Q 011567 479 LRD 481 (483)
Q Consensus 479 ~~~ 481 (483)
.++
T Consensus 419 ~~~ 421 (425)
T 1vp4_A 419 GKE 421 (425)
T ss_dssp HHH
T ss_pred Hhh
Confidence 554
No 69
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.97 E-value=6.6e-29 Score=248.22 Aligned_cols=319 Identities=12% Similarity=0.086 Sum_probs=242.4
Q ss_pred CeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC--CCEEEecccHHHHHh
Q 011567 108 GKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--PDSILYSYGLSTMFS 184 (483)
Q Consensus 108 G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~--e~~i~~~sG~~a~~~ 184 (483)
++++|||+++ +.++ .+|++.+++.++++.+. .| ..+...++++++++++|. ++.+++++|++++..
T Consensus 31 ~~~~i~l~~~~~~~~--~~~~v~~a~~~~~~~~~--------~y-~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~ 99 (363)
T 3ffh_A 31 LTKITKLSSNENPLG--TSKKVAAIQANSSVETE--------IY-PDGWASSLRKEVADFYQLEEEELIFTAGVDELIEL 99 (363)
T ss_dssp CSCCEECSSCSCTTC--CCHHHHHHHHTCBSCCC--------BC-----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHH
T ss_pred CCceEEccCCCCCCC--CCHHHHHHHHHHHHHhh--------cC-CCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHH
Confidence 4689999998 5544 56899998887665321 11 123457899999999995 456777888999999
Q ss_pred hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567 185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG 259 (483)
Q Consensus 185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G 259 (483)
+++++.++||.|+++.+.|.++...++..|.+++.++.+ |+++|++.+++ .+++|+++++++++|
T Consensus 100 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----------~~~~v~~~~p~nptG 169 (363)
T 3ffh_A 100 LTRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQDGEHDLEGMLNAIDE----------KTTIVWICNPNNPTG 169 (363)
T ss_dssp HHHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECCTTSCCCHHHHHHHCCT----------TEEEEEEESSCTTTC
T ss_pred HHHHHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCCCCCcCHHHHHHhccc----------CCCEEEEeCCCCCcC
Confidence 999999999999999999999999999999999998877 78888776642 267888888899999
Q ss_pred CccChHHHHHHHHHc--CcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHH
Q 011567 260 QIAPLDELIRLKEKY--RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDH 334 (483)
Q Consensus 260 ~i~~L~~l~~l~~k~--~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~ 334 (483)
.+.|++++.++|+.+ |+++|+||+|+.+..+ ...+.....+. .+.+++++|++|++|..| ||+++++++++.
T Consensus 170 ~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~--~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~ 246 (363)
T 3ffh_A 170 NYIELADIQAFLDRVPSDVLVVLDEAYIEYVTP-QPEKHEKLVRT--YKNLIITRTFSKIYGLASARVGYGIADKEIIRQ 246 (363)
T ss_dssp CCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSS-CCCCCGGGGGT--CTTEEEEEESSSTTCCSSCCCEEEEECHHHHHH
T ss_pred CCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCc-cccCHHHHhhc--CCCEEEEeechhhhcCchhceeeeecCHHHHHH
Confidence 999999999999888 9999999999865442 11222222222 234688899999998666 999999999998
Q ss_pred HHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchh
Q 011567 335 QRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKN 414 (483)
Q Consensus 335 ~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~ 414 (483)
++..... .+.++..++++.++++..+...+..++++++.+++.+.|++.+++.+.. +.++++++.++.
T Consensus 247 l~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~-~~~~~~~~~~~~------- 314 (363)
T 3ffh_A 247 LNIVRPP----FNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVKLYP-ANGNFVLIDLGI------- 314 (363)
T ss_dssp HHHTCCS----CCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECC-CCSSEEEEECSS-------
T ss_pred HHHhCCC----CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCCceECC-CCCeEEEEECCC-------
Confidence 8765443 2468888888888886433234577888899999999998866888764 467888887742
Q ss_pred hHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567 415 DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 474 (483)
Q Consensus 415 ~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~ 474 (483)
...++.+.+. ++||.+.++..+.. +..+|++++ |++|+++++++|+++
T Consensus 315 ---~~~~~~~~l~-~~gi~v~~g~~~~~-----~~~iRis~~---~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 315 ---EAGTIFSYLE-KNGYITRSGAALGF-----PTAVRITIG---KEEDNSAVIALLEKL 362 (363)
T ss_dssp ---CHHHHHHHHH-HTTEECEETTTTTC-----TTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHH-HCCeEEEeCccCCC-----CCeEEEECC---CHHHHHHHHHHHHHh
Confidence 1235666655 46999988654332 345999986 999999999999875
No 70
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.97 E-value=1.1e-29 Score=257.16 Aligned_cols=343 Identities=14% Similarity=0.171 Sum_probs=244.7
Q ss_pred CeeEEEeecC--CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHH
Q 011567 108 GKEVVNFASA--NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMF 183 (483)
Q Consensus 108 G~~~id~~s~--~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~ 183 (483)
++++|||+++ ++.++ .++.+.+++.+++++.+... ..|+......++++.+++++|.+ +.++.++|++++.
T Consensus 31 ~~~~i~l~~g~~~~~~~-~~~~v~~a~~~~~~~~~~~~----~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~ 105 (397)
T 2zyj_A 31 RPGILSFAGGLPAPELF-PKEEAAEAAARILREKGEVA----LQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALD 105 (397)
T ss_dssp STTCEEESSCCCCGGGC-CHHHHHHHHHHHHHHHHHHH----TSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHH
T ss_pred CCCceecCCCCCCchhC-CHHHHHHHHHHHHHhcchhh----hCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHH
Confidence 4568999887 45566 67899999999987632100 02222233578999999999853 4555577788999
Q ss_pred hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEE-EEecccCCC
Q 011567 184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYI-VVEAVYQNS 258 (483)
Q Consensus 184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~i-v~e~v~~~~ 258 (483)
.++++++++||.|+++.+.|.++...+...|.+++.++.+ |+++|++.+++. ++++| +++.+++++
T Consensus 106 ~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~d~~~l~~~l~~~---------~~~~v~~~~~~~npt 176 (397)
T 2zyj_A 106 LVGKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEGPDLDALEEVLKRE---------RPRFLYLIPSFQNPT 176 (397)
T ss_dssp HHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHHHHHC---------CCSCEEECCBSCTTT
T ss_pred HHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCCCCCHHHHHHHHhhc---------CCeEEEECCCCcCCC
Confidence 9999999999999999999989888888889988877653 788888888642 13454 567788899
Q ss_pred CCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCC---ceeEEEccccccccCCC---ceeeccH
Q 011567 259 GQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVD---KIDIVTAAMGHALATEG---GFCTGSA 329 (483)
Q Consensus 259 G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~---~~Di~~~s~~K~lg~~G---G~i~~~~ 329 (483)
|.+.| +++|+++|++||+++|+||+|+.+.++ |........+..+ +.+++++|++|++| .| ||+++++
T Consensus 177 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~ 253 (397)
T 2zyj_A 177 GGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFG--EARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAHP 253 (397)
T ss_dssp CCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCS--SCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECCH
T ss_pred CCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCC--CCCCCchhhhCcccCCCeEEEEeccccccc-ccceeEEEecCH
Confidence 99988 569999999999999999999986553 2322111111112 33588899999998 55 9999999
Q ss_pred HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHhhcc-CC-CceeecCCCCCEEEEEe
Q 011567 330 RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL--EENPDLITKLKKNTAILRTGLSD-IH-GLSIASNPESPIVFLIL 405 (483)
Q Consensus 330 ~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l--~~~~~~~~~l~~~~~~l~~~L~~-~~-~~~i~~~~~~~i~~l~l 405 (483)
++++.++.....+.++. +++.++++.++++.. +..++..++++++.+++.+.|++ ++ |+.+..+..+.++++.+
T Consensus 254 ~~~~~l~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~ 331 (397)
T 2zyj_A 254 EALQKLVQAKQGADLHT--PMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMEL 331 (397)
T ss_dssp HHHHHHHHHHHHHHSSC--CHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEEC
T ss_pred HHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEc
Confidence 99888765443444443 677777777777532 11234677778888889998876 45 57776555678888887
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567 406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~ 480 (483)
+... + ..++++.++++ ||.+.++....... ..+..+||+++.. |++|+++++++|++++++++.
T Consensus 332 ~~~~-----~---~~~~~~~l~~~-gi~v~~g~~f~~~~-~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~~ 395 (397)
T 2zyj_A 332 PKGL-----S---AEGLFRRALEE-NVAFVPGGPFFANG-GGENTLRLSYATL-DREGIAEGVRRLGRALKGLLA 395 (397)
T ss_dssp STTC-----C---HHHHHHHHHHT-TEEEEESGGGCTTS-CCTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-----C---HHHHHHHHHHC-CCEEechHHhcCCC-CCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence 5311 1 23567766655 99998865332110 0134599999874 999999999999999987753
No 71
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.97 E-value=2.1e-29 Score=253.55 Aligned_cols=328 Identities=18% Similarity=0.189 Sum_probs=241.4
Q ss_pred eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhhh
Q 011567 110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIP 187 (483)
Q Consensus 110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~ 187 (483)
.++||.++.+ .+..+|.+.+++.+++++ .. .|+......++++.++++++.+ +.+++++|++++..+++
T Consensus 26 ~~i~l~~~~~-~~~~~~~v~~a~~~~~~~-~~-------~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~ 96 (381)
T 1v2d_A 26 GAVNLGQGFP-SNPPPPFLLEAVRRALGR-QD-------QYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQ 96 (381)
T ss_dssp TCEECCCCSC-SSCCCHHHHHHHHHHTTT-SC-------SCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHH
T ss_pred CeEEecCCCC-CCCCCHHHHHHHHHHHHH-hc-------CCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHH
Confidence 4799988743 333679999999998876 22 2333334578999999999864 66777888999999999
Q ss_pred hhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC--------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567 188 CFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN--------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG 259 (483)
Q Consensus 188 ~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~--------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G 259 (483)
++.++||.|++..+.|.++...++..|.+++.++.+ |+++|++.++. ++++|+++++++++|
T Consensus 97 ~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~----------~~~~v~~~~~~nptG 166 (381)
T 1v2d_A 97 SLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTP----------RTRALLLNTPMNPTG 166 (381)
T ss_dssp HHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCT----------TEEEEEEESSCTTTC
T ss_pred HhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCc----------CCEEEEECCCCCCCC
Confidence 999999999999999988888888889988877653 67777665521 267788888889999
Q ss_pred CccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHH
Q 011567 260 QIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVD 333 (483)
Q Consensus 260 ~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~ 333 (483)
.+.| +++|+++|++||+++|+||+|+.+.+|..+..+.+. ..++|++++|++|++|..| ||+++++++++
T Consensus 167 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~----~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~ 242 (381)
T 1v2d_A 167 LVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF----APERTFTVGSAGKRLEATGYRVGWIVGPKEFMP 242 (381)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH----CTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHH
T ss_pred CccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh----cCCCEEEEeechhhcCCcccceEEEEeCHHHHH
Confidence 9987 899999999999999999999987665444344332 1345899999999998555 99999998888
Q ss_pred HHHhcCCceeecCCCcHHHHHHHHHHHHHH--hc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCC
Q 011567 334 HQRLSSSGYVFSASLPPYLASAAITAIDVL--EE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTG 410 (483)
Q Consensus 334 ~~~~~~~~~~fs~~~~p~~~aaa~~al~~l--~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~ 410 (483)
.++.......+ +.++..++++.++++.. ++ .++++++++++.+++.+.|++. |+++..+..+.++++.++..
T Consensus 243 ~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-- 317 (381)
T 1v2d_A 243 RLAGMRQWTSF--SAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELPGW-- 317 (381)
T ss_dssp HHHHHHHHHTS--SCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECTTC--
T ss_pred HHHHHHhhccc--CCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCcceEEEEecChH--
Confidence 77643222223 34677777777888755 22 2467888999999999999885 88877654567777777421
Q ss_pred CchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567 411 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 479 (483)
Q Consensus 411 ~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~ 479 (483)
+ +. .+++++||.+.+...+.... ..+..+|++++. |++++++++++|++++++..
T Consensus 318 ----~------~~-~~l~~~gi~v~~g~~~~~~~-~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r 372 (381)
T 1v2d_A 318 ----D------AF-RLVEEARVALIPASAFYLED-PPKDLFRFAFCK--TEEELHLALERLGRVVNSPR 372 (381)
T ss_dssp ----C------HH-HHHHHTCEECEEGGGGCSSS-CCTTEEEEECCS--CHHHHHHHHHHHHHHC----
T ss_pred ----h------HH-HHHHhCCEEEecchHhCCCC-CCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhcc
Confidence 1 23 34666799998865432110 012459999876 99999999999999887653
No 72
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.97 E-value=1.6e-29 Score=256.89 Aligned_cols=338 Identities=15% Similarity=0.133 Sum_probs=239.5
Q ss_pred CCeeEEEeecCCCC--CCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----C--C--CCEEEec
Q 011567 107 SGKEVVNFASANYL--GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G--T--PDSILYS 176 (483)
Q Consensus 107 ~G~~~id~~s~~~l--G~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g--~--e~~i~~~ 176 (483)
+|++++||.++.+. .+..+|.+.+++.+++++... .|+......++++.+++++ | . ++.++++
T Consensus 36 ~g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~-------~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~ 108 (406)
T 1xi9_A 36 KGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHN-------YYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTA 108 (406)
T ss_dssp TTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCC-------SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred cCCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCC-------CCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcC
Confidence 57889999998552 444568999999999876321 1222222345666666665 3 2 4567778
Q ss_pred ccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEE
Q 011567 177 YGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYI 249 (483)
Q Consensus 177 sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~i 249 (483)
+|++|+..++++++++||.|+++.+.|.++...+...|.+++.++.+ |+++|++.+++ ++++|
T Consensus 109 g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----------~~~~v 178 (406)
T 1xi9_A 109 AVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITD----------RTKAI 178 (406)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCT----------TEEEE
T ss_pred ChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCc----------CceEE
Confidence 88999999999999999999999999999999888889988877643 67777766642 25677
Q ss_pred EEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCce-eEEEccccccccCCC---
Q 011567 250 VVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI-DIVTAAMGHALATEG--- 322 (483)
Q Consensus 250 v~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~-Di~~~s~~K~lg~~G--- 322 (483)
+++++++++|.+.| +++|+++|++||+++|+||+|+.+.++.... ....++ .+. |++++|++|++|..|
T Consensus 179 ~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~-~~~~~~---~~~~~i~~~s~sK~~~~~G~r~ 254 (406)
T 1xi9_A 179 AVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHI-SPGSLT---KDVPVIVMNGLSKVYFATGWRL 254 (406)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCC-CHHHHC---SSSCEEEEEESTTTTCCGGGCC
T ss_pred EEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCC-CHHHcC---CCceEEEEeccccccCCCccEE
Confidence 78888899999887 9999999999999999999999876532111 112222 344 789999999998555
Q ss_pred ceee--ccH----HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecC
Q 011567 323 GFCT--GSA----RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASN 395 (483)
Q Consensus 323 G~i~--~~~----~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~ 395 (483)
||++ +++ ++++.++...... + +.+++.++++.++++...+ .++++++++++.+++.+.|++++++.+..+
T Consensus 255 G~~~~~~~~~~~~~l~~~l~~~~~~~-~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 331 (406)
T 1xi9_A 255 GYMYFVDPENKLSEVREAIDRLARIR-L--CPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKP 331 (406)
T ss_dssp EEEEEECTTCTTHHHHHHHHHHHHHT-C--CSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCC
T ss_pred EEEEEecCchhHHHHHHHHHHHHHhh-c--CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecC
Confidence 8888 888 8888776432221 2 3466677777777753221 245678888999999999998778877644
Q ss_pred CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567 396 PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS 475 (483)
Q Consensus 396 ~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~ 475 (483)
..+.++++.++...+ .+ ..++++.+++++||.+.+....... .+..+||+++ ++++++++++++|++++
T Consensus 332 ~~~~~~~~~~~~~~~---~~---~~~l~~~l~~~~gi~v~~g~~f~~~---~~~~lRis~~--~~~~~i~~~~~~l~~~l 400 (406)
T 1xi9_A 332 QGAFYIFPKIEVGPW---KN---DKEFVLDVLHNAHVLFVHGSGFGEY---GAGHFRAVFL--PPIEILEEAMDRFEKFM 400 (406)
T ss_dssp CBSSEECCEECSCSC---SS---HHHHHHHHHHHHCEECEEGGGGCGG---GTTBEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred CeeEEEEEecCccCC---CC---HHHHHHHHHHhCCEEEeCchhcCCC---CCCEEEEEec--CCHHHHHHHHHHHHHHH
Confidence 345556666642101 01 2356776664569999876543210 1245999997 89999999999999998
Q ss_pred HHHH
Q 011567 476 AVVL 479 (483)
Q Consensus 476 ~~~~ 479 (483)
++++
T Consensus 401 ~~~~ 404 (406)
T 1xi9_A 401 KERL 404 (406)
T ss_dssp HHC-
T ss_pred HHHh
Confidence 7754
No 73
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.97 E-value=3.3e-29 Score=255.00 Aligned_cols=344 Identities=14% Similarity=0.130 Sum_probs=236.6
Q ss_pred ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC-----CCEEEec
Q 011567 106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT-----PDSILYS 176 (483)
Q Consensus 106 ~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~-----e~~i~~~ 176 (483)
.+|+++|||+++.. .+..+|.+.+++.+++++.+.. .|+......++++.+++++ |. ++.++++
T Consensus 34 ~~g~~~idl~~g~~-~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~ 106 (412)
T 2x5d_A 34 RRGEDIIDLSMGNP-DGPTPPHIVEKLCTVAQREDTH------GYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTI 106 (412)
T ss_dssp HTTCCCEECSSCCC-CSCCCHHHHHHHHHTC---------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEES
T ss_pred hcCCCEEecCCCCC-CCCCCHHHHHHHHHHHhCCCCC------CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcC
Confidence 36788999999843 3336799999999888653221 1222222456777777776 73 3677778
Q ss_pred ccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCC---H-HHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567 177 YGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHND---M-DSLRNTLERVTADNKRAKKLRRYIVVE 252 (483)
Q Consensus 177 sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d---~-~~Le~~l~~~~~~~~~~~~~~~~iv~e 252 (483)
+|++|+..++++++++||.|++..+.|.++...+...|.+++.++.++ . -+++++.+.... ++++|++.
T Consensus 107 g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~-------~~~~v~l~ 179 (412)
T 2x5d_A 107 GSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIP-------KPRMMILG 179 (412)
T ss_dssp CHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEES-------CCSEEEEE
T ss_pred ChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhccc-------CceEEEEC
Confidence 889999999999999999999999999999888888899988887653 1 133433333222 24566666
Q ss_pred cccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccc-cCCCCccccccCCCCCceeEEEccccccccCCC---cee
Q 011567 253 AVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVL-GRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFC 325 (483)
Q Consensus 253 ~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~l-g~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i 325 (483)
.+++++|.+.| +++|+++|++||+++|+||+|+.+.+ |.....+....+. .+.|++++|++|++|..| ||+
T Consensus 180 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~r~G~~ 257 (412)
T 2x5d_A 180 FPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGA--KDIAVEFFTLSKSYNMAGWRIGFM 257 (412)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTG--GGTEEEEEECC-CCSCTTSCCEEE
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCc--cCcEEEEecCccccCCcccceEEE
Confidence 67888999987 78999999999999999999998765 3222223222111 245899999999998656 999
Q ss_pred eccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEE
Q 011567 326 TGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLI 404 (483)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~ 404 (483)
++++++++.++.......+ +.+++.++++.++++..++ .+++.++++++.+++.+.|+++ ++.+..+..+.++++.
T Consensus 258 ~~~~~~~~~l~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~ 334 (412)
T 2x5d_A 258 VGNPELVSALARIKSYHDY--GTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA-GWMVENPKASMYVWAK 334 (412)
T ss_dssp EECHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCSBSSEEEEE
T ss_pred EcCHHHHHHHHHHHhhhcc--CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCeeeEEEEE
Confidence 9999998887654322223 3467777777777764321 2457788888999999999886 7776644345677787
Q ss_pred ecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 405 l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
++...+ . ....++++.+++++||.+.+...+... .+..+|++++. ++++++++++.|+++++++
T Consensus 335 ~~~~~~--~---~~~~~~~~~l~~~~gi~v~~g~~f~~~---~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~ 398 (412)
T 2x5d_A 335 IPEPYA--H---LGSLEFAKKLLQDAKVSVSPGIGFGDY---GDDHVRFALIE--NRDRLRQAVRGIKAMFRAD 398 (412)
T ss_dssp CCTTTG--G---GCHHHHHHHHHHHHCEECEEGGGGCGG---GTTEEEEECCS--CHHHHHHHHHHHHHHHHHT
T ss_pred cCCccC--C---CCHHHHHHHHHHHCCEEEeCchhhCCC---CCCeEEEEecC--CHHHHHHHHHHHHHHHHhc
Confidence 742110 0 012357776666569999887543210 12459999986 8999999999999998764
No 74
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.97 E-value=2.7e-30 Score=257.65 Aligned_cols=335 Identities=14% Similarity=0.123 Sum_probs=239.1
Q ss_pred eeEEE-eecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhh
Q 011567 109 KEVVN-FASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIP 187 (483)
Q Consensus 109 ~~~id-~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~ 187 (483)
|+++| |.+++|||++.+|.+.+++.+++++++ .+..+..|+..+...+|+++|++++|.+..+++++|++|+..+++
T Consensus 3 ~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~--~~~~~~~y~~~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~ 80 (357)
T 3lws_A 3 NRLRTSFQQTTGQISGHGKRNVGVLKTAFAAVA--DEMASDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALR 80 (357)
T ss_dssp CHHHHHHHTCSEESSBSSCCBHHHHHHHHTTSC--TTCBCEETTEETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHH
T ss_pred chhhhHHHhhcccccCCCCCCHHHHHHHHHHhh--cccCcccccCChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHH
Confidence 45666 778899999999999999999998875 334455777777889999999999999989999999999999999
Q ss_pred hhccCCc--EEEEcCCchhHHHh---HhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567 188 CFCKKGD--LIVADEGVHWGIQN---GLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS 258 (483)
Q Consensus 188 ~~~~~gd--iI~~~~~~h~s~~~---g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~ 258 (483)
+++.++| +|+++..+|.+... .....|.+++.++.. |+++|++. . .+++|+++++++++
T Consensus 81 ~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~-----~-------~~~~v~~~~p~np~ 148 (357)
T 3lws_A 81 IWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAADRLMTLDEIKAL-----P-------DIACLLLELPQREI 148 (357)
T ss_dssp HHHHHHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSCTTSCCCHHHHHTC-----C-------SCSEEEEESSBGGG
T ss_pred HHhhcCCCcEEEecccceeeeeccchhhhccCcEEEEecCCCCCcCHHHHhcC-----c-------CcceEEEEcccccC
Confidence 9988888 89999999887655 245568888877643 56666554 1 15678888888776
Q ss_pred -CCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCCceeeccHHHHH
Q 011567 259 -GQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGSARVVD 333 (483)
Q Consensus 259 -G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~GG~i~~~~~~~~ 333 (483)
|.+.| +++|+++|++||+++|+||+|.++..+..|+...+.. ...|+++.|++|++ |+.||++++++++++
T Consensus 149 ~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~----~~~d~~~~s~sK~~~~~~gg~~~~~~~~~~ 224 (357)
T 3lws_A 149 GGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA----GLFDSIYISFYKGLGGIAGAILAGPAAFCQ 224 (357)
T ss_dssp TSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH----TTSSEEEEESSSTTCCSSCEEEEECHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH----hcCCEEEEeccccCCCCceEEEEcCHHHHH
Confidence 88887 8999999999999999999987433322222222211 22377788999999 677899999999888
Q ss_pred HHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee-cCCCCCEEEEEecCCCCCc
Q 011567 334 HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA-SNPESPIVFLILEKSTGSM 412 (483)
Q Consensus 334 ~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~-~~~~~~i~~l~l~~~~~~~ 412 (483)
.++.....+..+...+...++++.++++...+ ..++..++.+++.+.|++++++++. .++.++++++.++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~---- 297 (357)
T 3lws_A 225 TARIWKRRYGGDLISLYPYIVSADYYYELRKD---RMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQ---- 297 (357)
T ss_dssp HHHHHHHHTTCCCSCCHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESC----
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCC----
Confidence 76532111111111123344455566665322 3445677888999999998899873 456788999888532
Q ss_pred hhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCC---CCHHHHHHHHHHHHHHH
Q 011567 413 KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAA---HSEADLVKACESLKRIS 475 (483)
Q Consensus 413 ~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~---~t~edi~~~~~~l~~~~ 475 (483)
......++.+.+ .++||.+.+...+.. ....+|+++... .++++++++++.|++++
T Consensus 298 --~~~~~~~~~~~l-~~~Gi~v~~g~~~~~----~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 298 --AADISPKLEQVQ-EETGLGFVGYLVDKD----GYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp --HHHHHHHHHHHH-HHHCEESCSCCEECS----SEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred --hHHHHHHHHHHH-HhcCeEEecccccCC----CceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 111234566654 455999987643220 012489988644 68999999999988764
No 75
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.97 E-value=5.7e-29 Score=255.08 Aligned_cols=309 Identities=14% Similarity=0.066 Sum_probs=222.2
Q ss_pred HHHHHHHHHhhhC----------CCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhh-hcCCeEEEecCC-
Q 011567 156 HLDCEARIAKFLG----------TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY-LSRSTVVYFKHN- 223 (483)
Q Consensus 156 ~~~l~~~La~~~g----------~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~-~s~~~v~~~~~~- 223 (483)
..+|++.|+++++ .++.+++++|++|+..++++++++||.|+++.+.|.++..++. ..|.+++.++++
T Consensus 88 ~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~ 167 (435)
T 3piu_A 88 LPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTS 167 (435)
T ss_dssp CHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCG
T ss_pred cHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCC
Confidence 4788888888887 4567788999999999999999999999999999999988888 789999888875
Q ss_pred ------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCC
Q 011567 224 ------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGR 294 (483)
Q Consensus 224 ------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~ 294 (483)
|+++|++.+++.... ..++++|+++++++++|.+.| +++|+++|++||+++|+||+|+.+.++..+.
T Consensus 168 ~~~~~~d~~~l~~~l~~~~~~----~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~ 243 (435)
T 3piu_A 168 SNGFQITETALEEAYQEAEKR----NLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSF 243 (435)
T ss_dssp GGTSCCCHHHHHHHHHHHHHT----TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCC
T ss_pred ccCCcCCHHHHHHHHHHHHhc----CCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Confidence 788999888764321 123678888888899999987 6889999999999999999998876653222
Q ss_pred ccccccCCC--C------CceeEEEccccccccCCC---ceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHH
Q 011567 295 GLTEHCGVP--V------DKIDIVTAAMGHALATEG---GFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV 362 (483)
Q Consensus 295 g~~~~~~v~--~------~~~Di~~~s~~K~lg~~G---G~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~ 362 (483)
.....+..+ . .+.+++++|++|++|..| ||+++ ++++.+.++..... + ..++...+++.+.++.
T Consensus 244 ~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~ 319 (435)
T 3piu_A 244 ISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF--G--LVSSQTQHLLSAMLSD 319 (435)
T ss_dssp CCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGG--S--CCCHHHHHHHHHHHHC
T ss_pred cCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhhc--C--CCCHHHHHHHHHHhcC
Confidence 111111111 0 233488899999998666 89888 56677766543222 1 2245555555555542
Q ss_pred H---hc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeec
Q 011567 363 L---EE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSK 438 (483)
Q Consensus 363 l---~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~ 438 (483)
. ++ ..+.+++++++.+++.+.|++. |+++..+..+.++++.+....... ......++++.++++.||.+.+..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~~gi~v~~g~ 396 (435)
T 3piu_A 320 KKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLRSN--TFEAEMELWKKIVYEVHLNISPGS 396 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCSSSEEEEECGGGSSSS--SHHHHHHHHHHHHHTSCEECEEGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEEcccccccC--CchhHHHHHHHHHHHCCEEEeCCc
Confidence 2 21 2356788889999999999886 888776555688999885422111 111244677777776699998865
Q ss_pred ccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567 439 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 479 (483)
Q Consensus 439 ~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~ 479 (483)
.+... .+..+||+++.. |++++++++++|+++++++.
T Consensus 397 ~~~~~---~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 397 SCHCT---EPGWFRVCFANL-PERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp GGTCS---STTEEEEECSSS-CHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCC---CCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHHh
Confidence 43210 134599999654 99999999999999988753
No 76
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.97 E-value=7.6e-29 Score=253.60 Aligned_cols=349 Identities=12% Similarity=0.135 Sum_probs=238.9
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----C-CEEEecccHHHHH
Q 011567 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----P-DSILYSYGLSTMF 183 (483)
Q Consensus 109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e-~~i~~~sG~~a~~ 183 (483)
+++|||.++.+ .+..+|.+.+++.+++++.+.+..+.....|..++...+++.+.+++|. + +.+++++|++|+.
T Consensus 37 ~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~ 115 (429)
T 1yiz_A 37 YKPLNLGQGFP-DYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY 115 (429)
T ss_dssp HCCEECCSSSC-SSCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CCEEEecCCCC-CCCCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHH
Confidence 36899998743 3336799999999999763211111111123334444444444444462 3 5666688889999
Q ss_pred hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC---------------CCHHHHHHHHHHhhhhhhhccCccEE
Q 011567 184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH---------------NDMDSLRNTLERVTADNKRAKKLRRY 248 (483)
Q Consensus 184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~---------------~d~~~Le~~l~~~~~~~~~~~~~~~~ 248 (483)
.++++++++||.|++..+.|.++...++..|.+++.++. .|+++|++.++ . ++++
T Consensus 116 ~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~-------~~~~ 185 (429)
T 1yiz_A 116 ATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN---E-------KTKM 185 (429)
T ss_dssp HHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCC---T-------TEEE
T ss_pred HHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhc---c-------CceE
Confidence 999999999999999888888888888888888877764 35667766653 1 2677
Q ss_pred EEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCC-CCceeEEEccccccccCCC--
Q 011567 249 IVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVP-VDKIDIVTAAMGHALATEG-- 322 (483)
Q Consensus 249 iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~-~~~~Di~~~s~~K~lg~~G-- 322 (483)
|+++++++++|.+.| +++|+++|++||+++|+||+|+.+.++ |.+......+. ..++|+++.|++|++|..|
T Consensus 186 v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r 263 (429)
T 1yiz_A 186 IIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFE--PFEHIRICTLPGMWERTITIGSAGKTFSLTGWK 263 (429)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCT--TSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGC
T ss_pred EEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccC--CCCCcChhhccCCcCceEEEecchhccCCCCcc
Confidence 888888999999987 899999999999999999999876553 33222222221 2456899999999998666
Q ss_pred -ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHH-----H--hc-CcHHHHHHHHHHHHHHHhhccCCCceee
Q 011567 323 -GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV-----L--EE-NPDLITKLKKNTAILRTGLSDIHGLSIA 393 (483)
Q Consensus 323 -G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~-----l--~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~ 393 (483)
||+++++++++.++.......| +.++..++++.++++. . ++ ..+.+++++++.+++.+.|+++ ++.+.
T Consensus 264 ~G~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 340 (429)
T 1yiz_A 264 IGWAYGPEALLKNLQMVHQNCVY--TCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPT 340 (429)
T ss_dssp CEEEESCHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-TCEEE
T ss_pred eEEEEeCHHHHHHHHHHHhhccc--CCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC-CCccc
Confidence 9999999998887654322233 3467777778888887 3 21 2356777888999999999886 78776
Q ss_pred cCCCCCEEEEEecCCCCCc----hhhHHHHHHHHHHHHHhCCEEEEeeccccccc--CCCCCceEEEccCCCCHHHHHHH
Q 011567 394 SNPESPIVFLILEKSTGSM----KNDLQLLEDIADWALKEDGVFVVTSKRSMLDK--CRLPVGIRLFVSAAHSEADLVKA 467 (483)
Q Consensus 394 ~~~~~~i~~l~l~~~~~~~----~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~--~~~~~~lRi~~~~~~t~edi~~~ 467 (483)
.+..+.++++.+....... ........++++.+++++||.+.++....... ...+..+||+++ .++++|+++
T Consensus 341 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i~~~ 418 (429)
T 1yiz_A 341 VPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQKA 418 (429)
T ss_dssp ECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC--SCHHHHHHH
T ss_pred CCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec--CCHHHHHHH
Confidence 5555778888885421000 00001134567766656799998764321110 000245999997 499999999
Q ss_pred HHHHHHHH
Q 011567 468 CESLKRIS 475 (483)
Q Consensus 468 ~~~l~~~~ 475 (483)
+++|++++
T Consensus 419 l~~l~~~l 426 (429)
T 1yiz_A 419 AEILRKWK 426 (429)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhc
Confidence 99998875
No 77
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.97 E-value=3.9e-28 Score=243.91 Aligned_cols=336 Identities=14% Similarity=0.139 Sum_probs=237.8
Q ss_pred eEEEeecCCCCCCCCChHHHHHHHHHHHh-cCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhh
Q 011567 110 EVVNFASANYLGLIGHEKLLESCTSALEK-YGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAI 186 (483)
Q Consensus 110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~-~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai 186 (483)
.|+|++++ +. .+|++.+++.+++++ |+...+.....|+..+...++++++++++|.+ +.++.++|++|+..++
T Consensus 3 ~yld~~~~---~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~ 78 (384)
T 1eg5_A 3 VYFDNNAT---TR-VDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWIL 78 (384)
T ss_dssp EECBTTTC---CC-CCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHH
T ss_pred EEEecCcc---CC-CCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHH
Confidence 36676664 34 689999999999986 33322222222344567899999999999965 5667788899999999
Q ss_pred hhhc----cCCcEEEEcCCchhHHHhHh---hhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecc
Q 011567 187 PCFC----KKGDLIVADEGVHWGIQNGL---YLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAV 254 (483)
Q Consensus 187 ~~~~----~~gdiI~~~~~~h~s~~~g~---~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v 254 (483)
+++. ++||.|+++.+.|.++...+ ...|.+++.++.+ |+++|++.+++ ++++|+++++
T Consensus 79 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----------~~~~v~~~~~ 148 (384)
T 1eg5_A 79 KTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE----------DTFLVSIMAA 148 (384)
T ss_dssp HHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT----------TEEEEEEESB
T ss_pred HhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC----------CCeEEEEECC
Confidence 9998 78999999999998876655 6678888888763 67777766642 2678888899
Q ss_pred cCCCCCccChHHHHHHHHHcC--cEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHH
Q 011567 255 YQNSGQIAPLDELIRLKEKYR--FRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARV 331 (483)
Q Consensus 255 ~~~~G~i~~L~~l~~l~~k~~--~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~ 331 (483)
++++|.+.|+++|.++|++|| +++|+||+|++|... +++...++|++++|++|++|+.| |++++++++
T Consensus 149 ~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~---------~~~~~~~~di~~~s~sK~~g~~G~G~~~~~~~~ 219 (384)
T 1eg5_A 149 NNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIP---------FSLEKLEVDYASFSAHKFHGPKGVGITYIRKGV 219 (384)
T ss_dssp CTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSC---------CCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTS
T ss_pred CCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcc---------cCchhcCCCEEEecHHHhcCCCceEEEEEcCCC
Confidence 999999999999999999999 999999999865321 11221245999999999998776 999888775
Q ss_pred --HHHHHhcCC-ceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCC---CCCEEEEE
Q 011567 332 --VDHQRLSSS-GYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNP---ESPIVFLI 404 (483)
Q Consensus 332 --~~~~~~~~~-~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~---~~~i~~l~ 404 (483)
...+..... ......+.++..++++.++++.+.+ .++.+++++++.+++.+.|++ +++++..++ ...++.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~ 298 (384)
T 1eg5_A 220 PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPNTLSVS 298 (384)
T ss_dssp CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTTEEEEE
T ss_pred ccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCCEEEEE
Confidence 222111100 0012234577777777888887543 356888999999999999988 588876442 23567776
Q ss_pred ecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccccc---------CCC-----CCceEEEccCCCCHHHHHHHHHH
Q 011567 405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK---------CRL-----PVGIRLFVSAAHSEADLVKACES 470 (483)
Q Consensus 405 l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~---------~~~-----~~~lRi~~~~~~t~edi~~~~~~ 470 (483)
+... + ..++.+.+ .++||.+.++....... ... +..+||+++..+|++|+++++++
T Consensus 299 ~~~~------~---~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~ 368 (384)
T 1eg5_A 299 FPNI------R---GSTLQNLL-SGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKK 368 (384)
T ss_dssp CTTC------C---HHHHHHHH-HHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHH
T ss_pred eCCC------C---HHHHHHHH-hhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHH
Confidence 6421 1 23566654 55799998753211000 000 13499999988999999999999
Q ss_pred HHHHHHHHH
Q 011567 471 LKRISAVVL 479 (483)
Q Consensus 471 l~~~~~~~~ 479 (483)
|+++++++.
T Consensus 369 l~~~~~~~~ 377 (384)
T 1eg5_A 369 IEEILSFLD 377 (384)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 999987653
No 78
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.97 E-value=3.7e-29 Score=256.24 Aligned_cols=339 Identities=14% Similarity=0.162 Sum_probs=236.7
Q ss_pred ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC-CCEEEecccH-
Q 011567 106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT-PDSILYSYGL- 179 (483)
Q Consensus 106 ~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~-e~~i~~~sG~- 179 (483)
.+|+++|||+++++. +..+|.+.+++.+++++++.+.... .|+......+|++.+++++ +. ++.+++++|+
T Consensus 53 ~~~~~~i~l~~~~~~-~~~~~~v~~a~~~~~~~~~~~~~~~--~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~ 129 (432)
T 3ei9_A 53 YPDAQVISLGIGDTT-EPIPEVITSAMAKKAHELSTIEGYS--GYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAK 129 (432)
T ss_dssp CTTCCCEECSSCCCC-SCCCHHHHHHHHHHHHHTTSTTTCC--CCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred CCCCCeEEccCCCCC-CCCCHHHHHHHHHHHhcccccCCcc--CCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChH
Confidence 357889999999887 6688999999999999865432211 2343344578888888886 43 3556665555
Q ss_pred HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCC------------eEEEecCCCHHHHHHHHHHhhhhhhhccCccE
Q 011567 180 STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRS------------TVVYFKHNDMDSLRNTLERVTADNKRAKKLRR 247 (483)
Q Consensus 180 ~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~------------~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~ 247 (483)
+++. ++.++.++||.|+++.+.|.++..++...+. +++.++.++...+...+++. + .++
T Consensus 130 ~al~-~l~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~-~~~ 200 (432)
T 3ei9_A 130 CDIS-RLQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTV-------G-RTD 200 (432)
T ss_dssp HHHH-HHHHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGGC-------C-CCS
T ss_pred HHHH-HHHHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhhC-------C-CCC
Confidence 5555 4678889999999999999999888877763 56666665322221112211 1 255
Q ss_pred EEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC--
Q 011567 248 YIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-- 322 (483)
Q Consensus 248 ~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-- 322 (483)
+|+++.++|++|.+.+ +++|+++|++||+++|+||+|+.++++..+.++....+. .+.+++++|+||++|..|
T Consensus 201 ~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~g~~G~r 278 (432)
T 3ei9_A 201 IIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGA--EEVAMETASFSNYAGFTGVR 278 (432)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTG--GGTEEEEEESHHHHCTTTTC
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCC--CCeEEEEecchhccCCcccc
Confidence 6666678899999987 778888899999999999999987776544444433222 345788999999999777
Q ss_pred -ceeeccHHH--------HHHHHhcCCceeecCCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHhhccCCCce
Q 011567 323 -GFCTGSARV--------VDHQRLSSSGYVFSASLPPYLASAAITAIDV--LEENPDLITKLKKNTAILRTGLSDIHGLS 391 (483)
Q Consensus 323 -G~i~~~~~~--------~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~--l~~~~~~~~~l~~~~~~l~~~L~~~~~~~ 391 (483)
||+++++++ .+.+.... ...++ +.+++..+++.+++.. .+..+++.++++++.+++.+.|+++ |+.
T Consensus 279 ~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 355 (432)
T 3ei9_A 279 LGWTVIPKKLLYSDGFPVAKDFNRII-CTCFN-GASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYD 355 (432)
T ss_dssp CEEEECCTTCBCTTSCBHHHHHHHHH-HHSCC-CSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred eEEEEEChHHhhcchHHHHHHHHHHh-ccccC-CCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-Cce
Confidence 999988877 55554321 11222 3467777777766642 2223467888999999999999987 888
Q ss_pred eecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHH
Q 011567 392 IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESL 471 (483)
Q Consensus 392 i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l 471 (483)
+..+..++++++.++.. + ..+++..++++.||.+.++..+... .+..+||++ ..++++|+++++.|
T Consensus 356 ~~~~~~~~~~~~~~~~~------~---~~~~~~~ll~~~gv~v~~g~~f~~~---~~~~iRis~--~~~~e~l~~~l~rl 421 (432)
T 3ei9_A 356 VYGGKNAPYVWVHFPNQ------S---SWDVFAEILEKTHVVTTPGSGFGPG---GEGFVRVSA--FGHRENILEACRRF 421 (432)
T ss_dssp EEECSSSSEEEEECTTS------C---HHHHHHHHHHHHCEECEEGGGGCGG---GTTEEEEEC--CSCHHHHHHHHHHH
T ss_pred ecCCCcceEEEEECCCC------C---HHHHHHHHHHHCCEEEeCchHhCCC---CCCEEEEEe--cCCHHHHHHHHHHH
Confidence 77656788888888521 1 2346666777669999987543210 023499997 45999999999999
Q ss_pred HHHH
Q 011567 472 KRIS 475 (483)
Q Consensus 472 ~~~~ 475 (483)
++--
T Consensus 422 ~~~~ 425 (432)
T 3ei9_A 422 KQLY 425 (432)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8653
No 79
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.97 E-value=3.8e-28 Score=244.27 Aligned_cols=325 Identities=16% Similarity=0.172 Sum_probs=240.3
Q ss_pred eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--C-EEEecccHHHHHhhh
Q 011567 110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--D-SILYSYGLSTMFSAI 186 (483)
Q Consensus 110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~-~i~~~sG~~a~~~ai 186 (483)
.|+|..+. +. .+|.+.+++.+++.. ..++ ...+...++++.+++++|.+ + .+++++|++|+..++
T Consensus 21 ~~l~~~~~---~~-~~~~v~~a~~~~~~~----~~~~----~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~ 88 (386)
T 2dr1_A 21 YKLFTAGP---VA-CFPEVLEIMKVQMFS----HRSK----EYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASI 88 (386)
T ss_dssp SEECCSSS---CC-CCHHHHHHTTSCCCC----TTSH----HHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHH
T ss_pred ceeecCCC---cC-CcHHHHHHHhccccc----ccCH----HHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHH
Confidence 45665442 22 457777776554431 1110 12468899999999999976 5 445588899999999
Q ss_pred hhhccCCcEEEEcCCchhH--HHhHhhhcCCeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567 187 PCFCKKGDLIVADEGVHWG--IQNGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG 259 (483)
Q Consensus 187 ~~~~~~gdiI~~~~~~h~s--~~~g~~~s~~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G 259 (483)
+++.++||.|++..+.|.+ +...+...|.+++.++. .|+++|++.+++.. ++++|+++++++++|
T Consensus 89 ~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~--------~~~~v~~~~~~nptG 160 (386)
T 2dr1_A 89 RNGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNP--------DVEAVTITYNETSTG 160 (386)
T ss_dssp HHHSCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCT--------TCCEEEEESEETTTT
T ss_pred HHhhcCCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCC--------CCcEEEEEeecCCcc
Confidence 9999999999999988887 77777888998888876 58889998886421 257888889999999
Q ss_pred CccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCC-C-ceeeccHHHHHHHHh
Q 011567 260 QIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATE-G-GFCTGSARVVDHQRL 337 (483)
Q Consensus 260 ~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~-G-G~i~~~~~~~~~~~~ 337 (483)
.+.|+++|+++|++||+++|+||+|++|... +++...++|++++|++|++++. | |++++++++++.++.
T Consensus 161 ~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~---------~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~ 231 (386)
T 2dr1_A 161 VLNPLPELAKVAKEHDKLVFVDAVSAMGGAD---------IKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEK 231 (386)
T ss_dssp EECCHHHHHHHHHHTTCEEEEECTTTBTTBC---------CCTTTTTCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTT
T ss_pred hhCCHHHHHHHHHHcCCeEEEEccccccCcc---------ccccccCCcEEEEeccccccCCCceEEEEECHHHHHHHhc
Confidence 9999999999999999999999999976542 1122224599999999999854 4 899999988876632
Q ss_pred c--------------CC--ceeecCCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhhccCCCceeecCC--
Q 011567 338 S--------------SS--GYVFSASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGLSIASNP-- 396 (483)
Q Consensus 338 ~--------------~~--~~~fs~~~~p~~~aaa~~al~~l~~~---~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~-- 396 (483)
. .. ......+.++..++++.++++.+.+. ++++++++++.+++.+.|+++ |+++..+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 310 (386)
T 2dr1_A 232 MPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEPGH 310 (386)
T ss_dssp CTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCTTC
T ss_pred CCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCccc
Confidence 0 00 01122356777888888889887643 468899999999999999987 88776442
Q ss_pred -CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567 397 -ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS 475 (483)
Q Consensus 397 -~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~ 475 (483)
.++++++.++... + ..++++.++++ ||.+.+...+. .+..+|++++..+|++|+++++++|++++
T Consensus 311 ~~~~~~~~~~~~~~-----~---~~~~~~~l~~~-gi~v~~~~~~~-----~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 376 (386)
T 2dr1_A 311 ESPTITAVLTPPGI-----K---GDEVYEAMRKR-GFELAKGYGSV-----KEKTFRIGHMGYMKFEDIQEMLDNLREVI 376 (386)
T ss_dssp BCSSEEEEECCTTC-----C---HHHHHHHHHHT-TEECEECCGGG-----TTTEEEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEcCCCC-----C---HHHHHHHHHHC-CeEEecCcccc-----CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3678888874211 1 23567766655 99998765331 12459999999899999999999999998
Q ss_pred HHH
Q 011567 476 AVV 478 (483)
Q Consensus 476 ~~~ 478 (483)
+++
T Consensus 377 ~~~ 379 (386)
T 2dr1_A 377 NEL 379 (386)
T ss_dssp HHH
T ss_pred HHc
Confidence 875
No 80
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.97 E-value=1.9e-29 Score=253.19 Aligned_cols=328 Identities=16% Similarity=0.156 Sum_probs=237.7
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC---CCCEEEecccHHHHHhh
Q 011567 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG---TPDSILYSYGLSTMFSA 185 (483)
Q Consensus 109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g---~e~~i~~~sG~~a~~~a 185 (483)
..+.++..++++++..++. +++.+++..... .|+..+...+|++.++++++ .++++++++|++|+..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------~y~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~ 97 (375)
T 3op7_A 27 VSISSLTLEELFALSGTNP--EDFYKKLQGTKL-------NYGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLV 97 (375)
T ss_dssp CSCCCCCHHHHHHHHTCCH--HHHHHHHHTSCC-------SSCCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHH
T ss_pred CCCCCccHHHHHhhcccch--HHHHHHHhcCCc-------CCCCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHH
Confidence 3344444444444433332 566666665322 23333345789999999974 35778889999999999
Q ss_pred hhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567 186 IPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS 258 (483)
Q Consensus 186 i~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~ 258 (483)
++++.++||.|+++.+.|.++...+...|.+++.++.+ |+++|++.++. ++++|+++++++++
T Consensus 98 ~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----------~~~~v~~~~~~npt 167 (375)
T 3op7_A 98 LYSLIEPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRP----------TTKMICINNANNPT 167 (375)
T ss_dssp HHHHCCTTCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT----------TCCEEEEESSCTTT
T ss_pred HHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhcc----------CCeEEEEcCCCCCC
Confidence 99999999999999999999999999999988887754 77888777642 26778888999999
Q ss_pred CCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHH
Q 011567 259 GQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVV 332 (483)
Q Consensus 259 G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~ 332 (483)
|.+.| +++|+++|++||+++|+||+|+.+..+.. ....+.+ +.+++++|++|++|..| ||++++++++
T Consensus 168 G~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~-~~~~~~~-----~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~ 241 (375)
T 3op7_A 168 GAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDV-PSIIEVY-----DKGIAVNSLSKTYSLPGIRIGWVAANHQVT 241 (375)
T ss_dssp CCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCC-CCHHHHC-----TTEEEEEESSSSSSCGGGCCEEEECCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCC-Cchhhhc-----CCEEEEeEChhhcCCcccceEEEEeCHHHH
Confidence 99999 99999999999999999999987544310 1112222 23677889999998555 9999999999
Q ss_pred HHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCC
Q 011567 333 DHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGS 411 (483)
Q Consensus 333 ~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~ 411 (483)
+.++.....+.++ .+++.++++.++++..++ ..+.++.++++.+.+.+.|++.+++.+..+..+.+.++.+....
T Consensus 242 ~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-- 317 (375)
T 3op7_A 242 DILRDYRDYTMIC--AGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM-- 317 (375)
T ss_dssp HHHTTTGGGTTSC--CCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS--
T ss_pred HHHHHHHhhhccC--CCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC--
Confidence 9887654443333 467777777777775432 13456677888999999998877887765556667777775321
Q ss_pred chhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 412 MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 412 ~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
+ ..+++..+++++||.+.+...+.. +..+|++++ .+++++++++++|+++++++
T Consensus 318 ---~---~~~~~~~ll~~~gi~v~~g~~~~~-----~~~iRi~~~--~~~~~i~~~l~~l~~~l~~~ 371 (375)
T 3op7_A 318 ---P---MEDFCLQLLQEHGVLLVPGNRFER-----DGYVRLGFA--CEQETLIKGLEKLSQFLRRF 371 (375)
T ss_dssp ---C---HHHHHHHHHHHHCEECEEGGGGTC-----TTEEEECCC--SCHHHHHHHHHHHHHHHGGG
T ss_pred ---C---HHHHHHHHHHhCCEEEeChhhhCC-----CCeEEEEec--CCHHHHHHHHHHHHHHHHHH
Confidence 1 235667666667999988754332 355999876 45699999999999998764
No 81
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.97 E-value=1e-28 Score=253.14 Aligned_cols=335 Identities=12% Similarity=0.050 Sum_probs=242.4
Q ss_pred ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcC-CCCCCCCCcccChHHHHHHHHHHHhhhC--------CCCEEEec
Q 011567 106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYG-VGSCGPRGFYGTIDVHLDCEARIAKFLG--------TPDSILYS 176 (483)
Q Consensus 106 ~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g-~g~~~~~~~~g~~~~~~~l~~~La~~~g--------~e~~i~~~ 176 (483)
.+|+++|||+++.+ .+..+|.+.+++.+++++.. . .|+......++++.++++++ .++.++++
T Consensus 41 ~~g~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~-------~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~ 112 (437)
T 3g0t_A 41 ATGTKFCRMEMGVP-GLPAPQIGIETEIQKLREGVAS-------IYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTV 112 (437)
T ss_dssp HHTCCCEECCCCSC-CSCCCHHHHHHHHHHHHHTGGG-------SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred hcCCCEEeccCcCC-CCCCCHHHHHHHHHHHhCCcCc-------CCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeC
Confidence 35788999999844 34467999999999988521 1 12211123566777777665 34667778
Q ss_pred ccHHHHHhhhhhhc--cCCc--EEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCcc
Q 011567 177 YGLSTMFSAIPCFC--KKGD--LIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLR 246 (483)
Q Consensus 177 sG~~a~~~ai~~~~--~~gd--iI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~ 246 (483)
+|++++..++++++ ++|| .|+++.+.|.++...++..|.+++.++.+ |+++|++.++. . ++
T Consensus 113 g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~--~-------~~ 183 (437)
T 3g0t_A 113 GSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQT--G-------QF 183 (437)
T ss_dssp HHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTT--T-------CC
T ss_pred CHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHhc--C-------Cc
Confidence 88899999999998 9999 89999999999999999999998888764 56777776632 1 24
Q ss_pred EEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-------ccccCCCCCceeEEEccccc
Q 011567 247 RYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-------TEHCGVPVDKIDIVTAAMGH 316 (483)
Q Consensus 247 ~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-------~~~~~v~~~~~Di~~~s~~K 316 (483)
++|++..+++++|.+.| +++|+++|++||+++|+||+|+.+.++. ...+ ....+ ..+.+++++|++|
T Consensus 184 ~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK 260 (437)
T 3g0t_A 184 CSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRK-DYSHPGEPLYQPSVAN--YTDNYILALSSSK 260 (437)
T ss_dssp CEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTS-CCCSTTSSCCCCCGGG--TCSCEEEEEESTT
T ss_pred eEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCC-CcCcccccchhhccCC--CCCcEEEEEcCcc
Confidence 56656566888999988 7889999999999999999999766652 1111 11111 1345788999999
Q ss_pred cccCCC---ceeeccHHHHH-H-----------------HHhcCCceeecCCCcHHHHHHHHHHHHHHhc----CcHHHH
Q 011567 317 ALATEG---GFCTGSARVVD-H-----------------QRLSSSGYVFSASLPPYLASAAITAIDVLEE----NPDLIT 371 (483)
Q Consensus 317 ~lg~~G---G~i~~~~~~~~-~-----------------~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~----~~~~~~ 371 (483)
++|..| ||+++++++++ . ++...... ..+.+++.++++.++++.... ..+.++
T Consensus 261 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 338 (437)
T 3g0t_A 261 AFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYAL--SSGATHSAQWGMAAMLKACNDGEYNFRDSVI 338 (437)
T ss_dssp TTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHH--HSSSCHHHHHHHHHHHHHHHTTSCCHHHHHH
T ss_pred CCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhh--cCCCCHHHHHHHHHHHhCcHhHHHHHHHHHH
Confidence 998555 99999998888 6 43322222 234578888888888887653 356888
Q ss_pred HHHHHHHHHHHhhccCCCceee------cC-CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccccc
Q 011567 372 KLKKNTAILRTGLSDIHGLSIA------SN-PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK 444 (483)
Q Consensus 372 ~l~~~~~~l~~~L~~~~~~~i~------~~-~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~ 444 (483)
+++++.+++.+.|+++ |+.+. .+ ..+.++++.++.. + ..++.+.+++ +||.+.+...+...
T Consensus 339 ~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~l~~~L~~-~gi~v~~~~~~~~~- 406 (437)
T 3g0t_A 339 EYGRKARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYKGM------D---SSKLIEKFVR-YGMCAITLKTTGSK- 406 (437)
T ss_dssp HHHHHHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEETTC------C---HHHHHHHHHH-TTEECEESTTTTCC-
T ss_pred HHHHHHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEEecCCC------C---HHHHHHHHHH-cCeEEeeccccCCC-
Confidence 9999999999999987 88876 23 5678888888511 1 2356776555 59999876543211
Q ss_pred CCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 445 CRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 445 ~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
.+..+|++++. .|++|+++++++|++++++
T Consensus 407 --~~~~iRis~~~-~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 407 --RNEAMRICTSL-LPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp --CTTCEEEECSS-SCGGGHHHHHHHHHHHHHH
T ss_pred --CCCEEEEEEec-CCHHHHHHHHHHHHHHHhc
Confidence 11459999984 4999999999999988753
No 82
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.97 E-value=1.4e-28 Score=249.79 Aligned_cols=335 Identities=14% Similarity=0.136 Sum_probs=236.7
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CCC-----CEEEecc
Q 011567 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GTP-----DSILYSY 177 (483)
Q Consensus 107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~e-----~~i~~~s 177 (483)
.|+++|||+++.+ .+..+|.+.+++.+++++.... .|+......++++.+++++ |.+ +.++.++
T Consensus 45 ~g~~~idl~~g~~-~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G 117 (404)
T 2o1b_A 45 GPLPLINMAVGIP-DGPTPQGIIDHFQKALTIPENQ------KYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYG 117 (404)
T ss_dssp CSSCCEECCCCSC-SSCCCHHHHHHHHHHTTCHHHH------SCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESS
T ss_pred CCCCEEecCCcCC-CCCCCHHHHHHHHHHHhCCCCC------CCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCC
Confidence 4678999999843 3335789999999887541010 1211122355666666666 853 4555577
Q ss_pred cHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567 178 GLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVV 251 (483)
Q Consensus 178 G~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~ 251 (483)
|++++..++++++++||.|+++.+.|.++...+...|.+++.++.+ |+++|++.++. ++++|++
T Consensus 118 ~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~----------~~~~v~l 187 (404)
T 2o1b_A 118 TKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIID----------KTKLIYL 187 (404)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHH----------HEEEEEE
T ss_pred cHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhcc----------CceEEEE
Confidence 7899999999999999999999998888888888889988887653 67788877742 2567777
Q ss_pred ecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---cee
Q 011567 252 EAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFC 325 (483)
Q Consensus 252 e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i 325 (483)
+.+++++|.+.| +++|+++|++||+++|+||+|+.+.++.....+....+ ..+.|++++|++|++|..| ||+
T Consensus 188 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~--~~~~~i~~~s~sK~~g~~G~r~G~~ 265 (404)
T 2o1b_A 188 TYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASEN--GKDVAIEIYSLSKGYNMSGFRVGFA 265 (404)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTT--HHHHEEEEEESTTTTTCGGGCCEEE
T ss_pred cCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCC--CCCCEEEEEecchhccCchhheEeE
Confidence 777888999987 78999999999999999999997655321111222111 1245888999999998556 999
Q ss_pred eccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEE
Q 011567 326 TGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLI 404 (483)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~ 404 (483)
++++++++.++.....+.+ +.++..++++.++++..+ ..++.+++++++.+++.+.|+++ ++.+..+..+.++++.
T Consensus 266 ~~~~~~~~~l~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~ 342 (404)
T 2o1b_A 266 VGNKDMIQALKKYQTHTNA--GMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA-DLPFVHAKGGIYVWLE 342 (404)
T ss_dssp EECHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCCBSSEEEEE
T ss_pred ecCHHHHHHHHHHHhhccC--CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCeecCCCcceEEEEe
Confidence 9999998887654333333 347777777777877532 22456778888999999999887 7877654345567777
Q ss_pred ecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567 405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 476 (483)
Q Consensus 405 l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~ 476 (483)
++... + ..++++.+++++||.+.+...+... .+..+||+++. +++++++++++|+++++
T Consensus 343 ~~~~~-----~---~~~l~~~l~~~~gi~v~~g~~f~~~---~~~~iRis~~~--~~e~l~~~l~~l~~~l~ 401 (404)
T 2o1b_A 343 TPPGY-----D---SEQFEQFLVQEKSILVAPGKPFGEN---GNRYVRISLAL--DDQKLDEAAIRLTELAY 401 (404)
T ss_dssp CCTTC-----C---HHHHHHHHHHHHCEECEESGGGCGG---GTTEEEEECCS--CTTHHHHHHHHHHGGGG
T ss_pred CCCCC-----C---HHHHHHHHHHHCCEEEeCchhhCcC---CCCeEEEEEcC--CHHHHHHHHHHHHHHHH
Confidence 74211 1 2356777675569999886543210 12459999985 78999999999988764
No 83
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.97 E-value=3.6e-28 Score=245.72 Aligned_cols=345 Identities=15% Similarity=0.115 Sum_probs=242.5
Q ss_pred CCCeEE-ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC-----C-CE
Q 011567 100 AGPHTI-ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT-----P-DS 172 (483)
Q Consensus 100 ~g~~~~-~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~-----e-~~ 172 (483)
.+..++ .+|+++|||.++. ..+..+|.+.+++.++++... +.+ ...|..++..++++.+.+.+|. + +.
T Consensus 20 ~~~~~~~~~g~~~i~l~~~~-~~~~~~~~v~~a~~~~~~~~~-~y~---~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i 94 (396)
T 3jtx_A 20 AMQGISAPEGMEAVPLHIGE-PKHPTPKVITDALTASLHELE-KYP---LTAGLPELRQACANWLKRRYDGLTVDADNEI 94 (396)
T ss_dssp HTTTCCCCTTCCCEECSCCS-CCSCCCHHHHHHHHHTGGGGG-SCC---CTTCCHHHHHHHHHHHHHHTTTCCCCTTTSE
T ss_pred HHHhhhhccCCCeEEeCCcC-CCCCCCHHHHHHHHHHhhhcc-CCC---CCCCcHHHHHHHHHHHHHhcCCCCCCCCCeE
Confidence 344445 6789999999985 244467999999998876421 111 1234556666677777666663 3 56
Q ss_pred EEecccHHHHHhhhhhhccCC-----cEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhh
Q 011567 173 ILYSYGLSTMFSAIPCFCKKG-----DLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKR 241 (483)
Q Consensus 173 i~~~sG~~a~~~ai~~~~~~g-----diI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~ 241 (483)
++.++|++++..+++++.++| |.|+++.+.|.++...+...|.+++.++.+ |+++|++.+.+
T Consensus 95 ~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~------- 167 (396)
T 3jtx_A 95 LPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWK------- 167 (396)
T ss_dssp EEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHH-------
T ss_pred EEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhcc-------
Confidence 666888899999999999886 789999999989888899999998888753 67788887754
Q ss_pred ccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccC-CCCccccc---cCCCCCceeEEEccc
Q 011567 242 AKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGR-SGRGLTEH---CGVPVDKIDIVTAAM 314 (483)
Q Consensus 242 ~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~-~G~g~~~~---~~v~~~~~Di~~~s~ 314 (483)
.+++|+++.+++++|.+.| +++|+++|++||+++|+||+|+.+..+. ...+.... ++.. .+.++++.|+
T Consensus 168 ---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~ 243 (396)
T 3jtx_A 168 ---RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRS-RQKLLMFTSL 243 (396)
T ss_dssp ---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCC-CTTEEEEEES
T ss_pred ---CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccc-cCcEEEEecc
Confidence 2567777778889999988 5559999999999999999998765432 11111111 1111 3447888999
Q ss_pred cccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCce
Q 011567 315 GHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLS 391 (483)
Q Consensus 315 ~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~ 391 (483)
||+++..| ||+++++++++.++..... ++.+.++..++++.++++..+...+.+++++++.+.+.+.|.+. +.
T Consensus 244 sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~ 319 (396)
T 3jtx_A 244 SKRSNVPGLRSGFVAGDAELLKNFLLYRTY--HGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQV--FD 319 (396)
T ss_dssp TTTSSCGGGCCEEEEECHHHHHHHHHHHHH--HTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTT--SC
T ss_pred ccccCCcccceEEEEeCHHHHHHHHHHHhh--cccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc--CC
Confidence 99987666 9999999998887654322 23355788888887777642222456778888888999998775 33
Q ss_pred eecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccccc---CCCCCceEEEccCCCCHHHHHHHH
Q 011567 392 IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK---CRLPVGIRLFVSAAHSEADLVKAC 468 (483)
Q Consensus 392 i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~---~~~~~~lRi~~~~~~t~edi~~~~ 468 (483)
+..+..+.++++.+... ...+++..+++++||.+.++..+.... ...+..+||+++. |++++++++
T Consensus 320 ~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~~~~i~~~l 388 (396)
T 3jtx_A 320 VKLPDASFYIWLKVPDG---------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--DVATCVKAA 388 (396)
T ss_dssp CCCCSSSSEEEEECTTS---------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--CHHHHHHHH
T ss_pred ccCCCeeEEEEEECCCC---------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--CHHHHHHHH
Confidence 44444577888887431 123566766666699999876544310 0112459999875 999999999
Q ss_pred HHHHHHH
Q 011567 469 ESLKRIS 475 (483)
Q Consensus 469 ~~l~~~~ 475 (483)
++|++++
T Consensus 389 ~~l~~~l 395 (396)
T 3jtx_A 389 EDIVSLY 395 (396)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9998764
No 84
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.97 E-value=3.2e-29 Score=258.01 Aligned_cols=342 Identities=13% Similarity=0.107 Sum_probs=240.4
Q ss_pred ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----CC-CCEE-EecccH
Q 011567 106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----GT-PDSI-LYSYGL 179 (483)
Q Consensus 106 ~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g~-e~~i-~~~sG~ 179 (483)
.+|+++|||+++ +.++..+|.+.+++.+++++++.... ...|+......+|++.+++++ +. ++.+ +.++++
T Consensus 66 ~~~~~~i~l~~g-~~~~~~~~~v~~a~~~~~~~~~~~~~--~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~ 142 (449)
T 3qgu_A 66 NPDAKIISLGIG-DTTEPLPKYIADAMAKAAAGLATREG--YSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSK 142 (449)
T ss_dssp CTTCCCEECSSC-CCCCCCCHHHHHHHHHHHHGGGGSCC--CCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred CCCCCEEEeeCC-CCCCCCCHHHHHHHHHHHHhhccccC--CCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHH
Confidence 368899999997 45666789999999999997542111 112333344678999999998 43 3444 446666
Q ss_pred HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCe----------EEEecCCCHHHHHHHHHHhhhhhhhccCccEEE
Q 011567 180 STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRST----------VVYFKHNDMDSLRNTLERVTADNKRAKKLRRYI 249 (483)
Q Consensus 180 ~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~----------v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~i 249 (483)
+++..+ .++.++||.|+++.++|.++..++...|.+ ++.+++++.+.+...+++. ..+++|
T Consensus 143 ~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v 213 (449)
T 3qgu_A 143 CDIARI-QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA--------KRTDII 213 (449)
T ss_dssp HHHHHH-HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC--------CCCSEE
T ss_pred HHHHHH-HHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc--------CCCCEE
Confidence 777776 888899999999999999999999998888 8888876543332222111 125667
Q ss_pred EEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---c
Q 011567 250 VVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---G 323 (483)
Q Consensus 250 v~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G 323 (483)
+++.+++++|.+.+ +++|+++|++||+++|+||+|+.+..+..+......+.. ..+++++++|+||++|..| |
T Consensus 214 ~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~g~~G~r~G 292 (449)
T 3qgu_A 214 FFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPG-ADEVAIETCSFSKYAGFTGVRLG 292 (449)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTT-GGGTEEEEEECSGGGTCTTCCCE
T ss_pred EEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccC-CCCcEEEEecchhhcCCccceeE
Confidence 76788889999987 888999999999999999999986654322222222221 1345788999999998667 9
Q ss_pred eeeccHHHHH--------HHHhcCCceeecCCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHhhccCCCceee
Q 011567 324 FCTGSARVVD--------HQRLSSSGYVFSASLPPYLASAAITAIDV--LEENPDLITKLKKNTAILRTGLSDIHGLSIA 393 (483)
Q Consensus 324 ~i~~~~~~~~--------~~~~~~~~~~fs~~~~p~~~aaa~~al~~--l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~ 393 (483)
|+++++++++ .+... ....++ +.+++.++++.++++. .+..+++.++++++.+++.+.|+++ |+.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 369 (449)
T 3qgu_A 293 WTVVPKALKYANGEPVHADWNRV-MTTCFN-GASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-GFSVY 369 (449)
T ss_dssp EEECCTTCBCTTSCBHHHHHHHH-HHHSCC-CCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEE
T ss_pred EEecCHHHHhhhhhhHHHHHHHH-hhcccC-CCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeee
Confidence 9999887764 22211 112222 3467777777777754 2223467888999999999999987 88877
Q ss_pred cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567 394 SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR 473 (483)
Q Consensus 394 ~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~ 473 (483)
.+..++++++.++ .. + ..++++.++++.||.+.++..+... .+..|||++. .|+++|++++++|++
T Consensus 370 ~~~~~~~~~~~~~-~~-----~---~~~~~~~l~~~~gI~v~pg~~f~~~---~~~~iRis~~--~~~e~i~~~l~~l~~ 435 (449)
T 3qgu_A 370 GGDDAPYIWVGFP-GK-----P---SWDVFAEILERCNIVTTPGSGYGPA---GEGFVRASAF--GSRENILEAVRRFKE 435 (449)
T ss_dssp ESSSSSEEEEECT-TS-----C---HHHHHHHHHHHHCEECEEGGGGCGG---GTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred CCCCeeEEEEECC-CC-----C---HHHHHHHHHHHCCEEEecchHhCCC---CCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 6656888888875 11 1 2356777777669999887543211 0245999954 599999999999998
Q ss_pred HHHH
Q 011567 474 ISAV 477 (483)
Q Consensus 474 ~~~~ 477 (483)
++++
T Consensus 436 ~~~~ 439 (449)
T 3qgu_A 436 AYGK 439 (449)
T ss_dssp HHC-
T ss_pred HHHh
Confidence 8754
No 85
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.97 E-value=8.2e-30 Score=255.21 Aligned_cols=323 Identities=13% Similarity=0.121 Sum_probs=234.7
Q ss_pred CChHHHHHHHHHHHhcCC-CCC-CCCCcccChHHHHHHHHH-HHhhhCCCCEEEe-cccHHHHHhhhhhhccCCcEEEEc
Q 011567 124 GHEKLLESCTSALEKYGV-GSC-GPRGFYGTIDVHLDCEAR-IAKFLGTPDSILY-SYGLSTMFSAIPCFCKKGDLIVAD 199 (483)
Q Consensus 124 ~~p~i~~a~~~~l~~~g~-g~~-~~~~~~g~~~~~~~l~~~-La~~~g~e~~i~~-~sG~~a~~~ai~~~~~~gdiI~~~ 199 (483)
.+|.+.+++.+++..... +.+ ..+..++..+...+++++ +++++|.+ .+++ ++|++|+..+++++.++||.|+++
T Consensus 21 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~-~v~~~~g~t~a~~~~~~~~~~~gd~vl~~ 99 (371)
T 2e7j_A 21 LTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD-VARVTNGAREAKFAVMHSLAKKDAWVVMD 99 (371)
T ss_dssp CCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS-EEEEESSHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC-EEEEeCChHHHHHHHHHHHhCCCCEEEEc
Confidence 578999999988876421 111 112233445678899999 99999988 6655 555899999999999999999999
Q ss_pred CCchhHHHhHhhhcCCeEEEec--CC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHH
Q 011567 200 EGVHWGIQNGLYLSRSTVVYFK--HN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKE 272 (483)
Q Consensus 200 ~~~h~s~~~g~~~s~~~v~~~~--~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~ 272 (483)
.+.|.++..+++..|.+++.++ .+ |+++|++.+++.... .++++|+++++++++|.+.|+++|+++|+
T Consensus 100 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~-----~~~~~v~~~~~~nptG~~~~~~~i~~~~~ 174 (371)
T 2e7j_A 100 ENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKR-----GEVVLALITYPDGNYGNLPDVKKIAKVCS 174 (371)
T ss_dssp TTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTT-----SCEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred cCcchHHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhccc-----CCeEEEEEECCCCCCcccCCHHHHHHHHH
Confidence 9999999999999999999988 65 789999888754210 13678999999999999999999999999
Q ss_pred HcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccC--CCceeeccHHHHHH-HHhcCCceee-----
Q 011567 273 KYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT--EGGFCTGSARVVDH-QRLSSSGYVF----- 344 (483)
Q Consensus 273 k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~--~GG~i~~~~~~~~~-~~~~~~~~~f----- 344 (483)
+||+++|+||+|+.|..+. .+ ..+ ++|++++|++|++++ .+|++++++++++. ++....++.+
T Consensus 175 ~~~~~li~D~a~~~~~~~~---~~-~~~-----~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (371)
T 2e7j_A 175 EYDVPLLVNGAYAIGRMPV---SL-KEI-----GADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELL 245 (371)
T ss_dssp TTTCCEEEECTTTBTTBCC---CH-HHH-----TCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGT
T ss_pred HcCCeEEEECccccCCCCC---Ch-hhc-----CCCEEEecCCcCCCCCCCcEEEEEechhhhhhccccccCcccccccc
Confidence 9999999999999865431 11 112 238999999999863 34899999888776 5543332233
Q ss_pred cCCCcHHHHHHHHHHHHHHhcCcHHHHHH--HHHHHHHHHhhccCCCceeecCC--CCCEEEEEecCCCCCchhhHHHHH
Q 011567 345 SASLPPYLASAAITAIDVLEENPDLITKL--KKNTAILRTGLSDIHGLSIASNP--ESPIVFLILEKSTGSMKNDLQLLE 420 (483)
Q Consensus 345 s~~~~p~~~aaa~~al~~l~~~~~~~~~l--~~~~~~l~~~L~~~~~~~i~~~~--~~~i~~l~l~~~~~~~~~~~~~~~ 420 (483)
+.+.++..++++.++++.+.+ +..+++ +++.+++.+.|+++ ++++..+. .++++++.++ ...
T Consensus 246 ~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~-----------~~~ 311 (371)
T 2e7j_A 246 GCTARGATIITLMASFPHVRE--RIKRWDEEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAE-----------VLY 311 (371)
T ss_dssp TCCCCSHHHHHHHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECH-----------HHH
T ss_pred cCCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCccCceEEEECC-----------CHH
Confidence 345677777777788887765 577788 88999999999887 88876543 4778888763 133
Q ss_pred HHHHHHHHhCCEEEEeecccccc-cCCCCCceE-EEccCC-CCHHHHHHHHHHHHHHHHH
Q 011567 421 DIADWALKEDGVFVVTSKRSMLD-KCRLPVGIR-LFVSAA-HSEADLVKACESLKRISAV 477 (483)
Q Consensus 421 ~i~~~~l~~~Gv~v~~~~~~~~~-~~~~~~~lR-i~~~~~-~t~edi~~~~~~l~~~~~~ 477 (483)
++.+.+. ++||.+.+ ...... ....+..+| ++++.. +|++|+++++++|++++++
T Consensus 312 ~~~~~l~-~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 312 EISKKAK-GGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp HHHHHSS-SGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence 5666544 56998876 322110 000134599 999988 9999999999999998765
No 86
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.97 E-value=2.8e-28 Score=243.78 Aligned_cols=320 Identities=13% Similarity=0.078 Sum_probs=238.9
Q ss_pred CeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC--CCEEEecccHHHHHh
Q 011567 108 GKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--PDSILYSYGLSTMFS 184 (483)
Q Consensus 108 G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~--e~~i~~~sG~~a~~~ 184 (483)
++++|||+++ +.++ .+|.+.+++.++++.. . .|.... ..++++++++++|. ++.+++++|++++..
T Consensus 29 ~~~~i~l~~~~~~~~--~~~~v~~a~~~~~~~~-~-------~y~~~~-~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~ 97 (365)
T 3get_A 29 VKEVIKLASNENPFG--TPPKAIECLRQNANKA-H-------LYPDDS-MIELKSTLAQKYKVQNENIIIGAGSDQVIEF 97 (365)
T ss_dssp CSCCEECSSCCCTTC--SCHHHHHHHHHHGGGT-T-------SCCCTT-CHHHHHHHHHHHTCCGGGEEEESSHHHHHHH
T ss_pred CCceEEecCCCCCCC--CCHHHHHHHHHHHHhh-c-------cCCCCC-hHHHHHHHHHHhCCCcceEEECCCHHHHHHH
Confidence 3679999988 6655 5799999999988752 1 121111 26899999999994 466777888999999
Q ss_pred hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC--C---CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567 185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--N---DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG 259 (483)
Q Consensus 185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~--~---d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G 259 (483)
++++++++||.|+++.+.|.++...++..|.+++.++. + |+++|++.++ . ++++|+++.+++++|
T Consensus 98 ~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~---~-------~~~~v~~~~p~nptG 167 (365)
T 3get_A 98 AIHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHK---D-------EIKLIFLCLPNNPLG 167 (365)
T ss_dssp HHHHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSSSSCCHHHHHHHHHHTT---T-------TEEEEEEESSCTTTC
T ss_pred HHHHHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecCCCCCCCHHHHHHHhC---C-------CCCEEEEcCCCCCCC
Confidence 99999999999999999999999999999999998886 2 3444444442 2 367888888888999
Q ss_pred CccChHHHHHHHH--HcCcEEEEeCccccccc---cCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHH
Q 011567 260 QIAPLDELIRLKE--KYRFRVFLDESNSFGVL---GRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARV 331 (483)
Q Consensus 260 ~i~~L~~l~~l~~--k~~~~li~DEa~s~g~l---g~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~ 331 (483)
.+.|++++.++++ ++|+++|+||+|+.+.+ +....+.....+. .+.+++++|++|++|..| ||+++++++
T Consensus 168 ~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~ 245 (365)
T 3get_A 168 ECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKE--FDNVLYLGTFSKLYGLGGLRIGYGIANANI 245 (365)
T ss_dssp CCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHH--CTTEEEEEESSSTTSCTTTCCEEEEECHHH
T ss_pred CCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhcc--CCCEEEEeecchHhcCcchheEEEEcCHHH
Confidence 9999888888888 77999999999987653 2111222222221 234788999999998656 999999999
Q ss_pred HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCC
Q 011567 332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGS 411 (483)
Q Consensus 332 ~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~ 411 (483)
++.++.....+ +.++..++++.++++..+...+.+++++++.+++.+.|+++ ++.+.. +.++++++.++..
T Consensus 246 ~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~-~~~~~~~~~~~~~--- 316 (365)
T 3get_A 246 ISAFYKLRAPF----NVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH-NIKIID-SYTNFITYFFDEK--- 316 (365)
T ss_dssp HHHHHHHSCTT----CSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCEECC-CSSSEEEEECSSS---
T ss_pred HHHHHHhcCCC----CcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEECC-CCCeEEEEECCCC---
Confidence 99887654442 35778888777777643333467888889999999999887 887764 4677888877432
Q ss_pred chhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567 412 MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS 475 (483)
Q Consensus 412 ~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~ 475 (483)
...++.+.+. ++||.+.+...+. +..+|++++ |++|+++++++|++++
T Consensus 317 ------~~~~~~~~l~-~~gi~v~~g~~~~------~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 317 ------NSTDLSEKLL-KKGIIIRNLKSYG------LNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp ------CHHHHHHHHH-TTTEECEECGGGT------CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHH-HCCEEEEECccCC------CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 1235666654 4699998875432 245999986 8999999999998875
No 87
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.97 E-value=6.1e-28 Score=243.31 Aligned_cols=336 Identities=16% Similarity=0.194 Sum_probs=234.0
Q ss_pred eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----C-CEEEecccHHHHHh
Q 011567 110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----P-DSILYSYGLSTMFS 184 (483)
Q Consensus 110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e-~~i~~~sG~~a~~~ 184 (483)
.+|||.++.+ ++..+|.+.+++.+++++...+... ..|..++...+++.+.+++|. + +.+++++|++++..
T Consensus 31 ~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y~~---~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~ 106 (386)
T 1u08_A 31 QAINLSQGFP-DFDGPRYLQERLAHHVAQGANQYAP---MTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 106 (386)
T ss_dssp TCEECCCSSC-SSCCCHHHHHHHHHHHHTTCCSCCC---TTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CeEEecCCCC-CCCCCHHHHHHHHHHHHhhccCCCC---CCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHH
Confidence 5899988744 3436799999999998762111111 123333444444444444563 3 56677888899999
Q ss_pred hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567 185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS 258 (483)
Q Consensus 185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~ 258 (483)
++++++++||.|++..+.|.++...++..|.+++.++. .|+++|++.+. . ++++|+++++++++
T Consensus 107 ~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~---~-------~~~~v~l~~p~npt 176 (386)
T 1u08_A 107 AITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLS---E-------RTRLVILNTPHNPS 176 (386)
T ss_dssp HHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCC---T-------TEEEEEEESSCTTT
T ss_pred HHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhc---c-------cCEEEEEeCCCCCC
Confidence 99999999999999999998988888889998888775 36777776663 1 26777888888999
Q ss_pred CCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCC-CCceeEEEccccccccCCC---ceeeccHHH
Q 011567 259 GQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVP-VDKIDIVTAAMGHALATEG---GFCTGSARV 331 (483)
Q Consensus 259 G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~-~~~~Di~~~s~~K~lg~~G---G~i~~~~~~ 331 (483)
|.+.| +++|+++|++||+++|+||+|+.+.++ |.+......+. ..+.|++++|++|++|..| ||+++++++
T Consensus 177 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~ 254 (386)
T 1u08_A 177 ATVWQQADFAALWQAIAGHEIFVISDEVYEHINFS--QQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPI 254 (386)
T ss_dssp CCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCC--SSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHH
T ss_pred CccCCHHHHHHHHHHHHHcCcEEEEEccccccccC--CCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCHHH
Confidence 99987 799999999999999999999876553 22221112221 1235899999999998656 999999998
Q ss_pred HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCC
Q 011567 332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTG 410 (483)
Q Consensus 332 ~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~ 410 (483)
++.++.......|+ .++..++++.++++..++ .++.+++++++.+++.+.|++. |+.+..+..+.++++.++....
T Consensus 255 ~~~l~~~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~ 331 (386)
T 1u08_A 255 SAEIRKVHQYLTFS--VNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNES-RLEILPCEGTYFLLVDYSAVST 331 (386)
T ss_dssp HHHHHHHHHHHTSS--CCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSS-SCEECCCCBSSEEEEECTTTCC
T ss_pred HHHHHHHHHhhccC--CChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCceEEEEEecCCCCC
Confidence 88776543222333 356666777777775321 2347788889999999999886 8887655456788888753200
Q ss_pred CchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567 411 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR 473 (483)
Q Consensus 411 ~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~ 473 (483)
. + ..++++.+++++||.+.+........ ..+..+|++++ .++++|++++++|++
T Consensus 332 -~--~---~~~~~~~l~~~~gi~v~~g~~f~~~~-~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 332 -L--D---DVEFCQWLTQEHGVAAIPLSVFCADP-FPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp -S--C---HHHHHHHHHHHSCEECEEGGGGCSSC-CCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred -C--C---HHHHHHHHHHhCCEEEeCchHhCCCC-CCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 0 1 23566766666799998764321100 01245999997 489999999998864
No 88
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=2.7e-28 Score=245.90 Aligned_cols=317 Identities=15% Similarity=0.116 Sum_probs=230.4
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC--EEEecccHHHHHhhhhhhccC---------
Q 011567 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD--SILYSYGLSTMFSAIPCFCKK--------- 192 (483)
Q Consensus 124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~--~i~~~sG~~a~~~ai~~~~~~--------- 192 (483)
.+|++.+++.+++.+.... +....+..+...++++++++++|.+. .+++++|++|+..+++++..+
T Consensus 42 ~~~~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~ 118 (397)
T 3f9t_A 42 VLPITRKIVDIFLETNLGD---PGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGL 118 (397)
T ss_dssp CCTHHHHHHHHHTTCCTTS---GGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHhhcCCC---cccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcc
Confidence 4689999998888763221 11122456788899999999999754 377799999999999888765
Q ss_pred ----CcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC
Q 011567 193 ----GDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP 263 (483)
Q Consensus 193 ----gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~ 263 (483)
||.|+++.++|.++...+...|.+++.++.+ |+++|++.+++. ++++|+++++++++|.+.|
T Consensus 119 ~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~---------~~~~v~~~~~~nptG~~~~ 189 (397)
T 3f9t_A 119 SKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDY---------DVDGIIGIAGTTELGTIDN 189 (397)
T ss_dssp CCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTTSSBCHHHHHHHHHHS---------CCCEEEEEBSCTTTCCBCC
T ss_pred cCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCCCcCCHHHHHHHHhhc---------CCeEEEEECCCCCCCCCCC
Confidence 9999999999999999999999999998876 889999888652 1567777778899999999
Q ss_pred hHHHHHHHHHcCcEEEEeCccccccccCCCCccc-----cccCCCCCceeEEEccccccccCC--Ccee-eccHHHHHHH
Q 011567 264 LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-----EHCGVPVDKIDIVTAAMGHALATE--GGFC-TGSARVVDHQ 335 (483)
Q Consensus 264 L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-----~~~~v~~~~~Di~~~s~~K~lg~~--GG~i-~~~~~~~~~~ 335 (483)
+++|+++|++||+++|+||+|+.+.++.++.+.. ..++... ++|+++.|++|++++. .|++ +.++.+.+.+
T Consensus 190 l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~~~~ 268 (397)
T 3f9t_A 190 IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYKRYL 268 (397)
T ss_dssp HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGGGGT
T ss_pred HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEEeCHHHHHhh
Confidence 9999999999999999999999887765543211 1222222 5689999999999522 2554 5555565554
Q ss_pred HhcCCceeec-------CC---CcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEe
Q 011567 336 RLSSSGYVFS-------AS---LPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLIL 405 (483)
Q Consensus 336 ~~~~~~~~fs-------~~---~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l 405 (483)
+.. ..+... ++ .++..+.++.+.+... ...+..++++++.+++.+.|+++ ++++..++.++++.+.+
T Consensus 269 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~ 345 (397)
T 3f9t_A 269 DVD-APYLTETRQATILGTRVGFGGACTYAVLRYLGRE-GQRKIVNECMENTLYLYKKLKEN-NFKPVIEPILNIVAIED 345 (397)
T ss_dssp CEE-CTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEEEEEC
T ss_pred ccC-CccccCCCccccccccccchHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHC-CCEEEcCCCccEEEEEe
Confidence 322 122111 11 1333444444433221 22467888899999999999988 88866666788888776
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567 406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 476 (483)
Q Consensus 406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~ 476 (483)
.+ ..++.+.+++ +||.+.+... +..+|++++..+|++|+++++++|+++++
T Consensus 346 ~~-----------~~~~~~~l~~-~gi~v~~~~~--------~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 346 ED-----------YKEVCKKLRD-RGIYVSVCNC--------VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp TT-----------HHHHHHHHHH-TTCBCEECSS--------SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred CC-----------HHHHHHHHHh-CCeEEeccCC--------CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 32 2356666555 5999887643 24599999999999999999999998764
No 89
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.96 E-value=2.5e-28 Score=248.67 Aligned_cols=342 Identities=14% Similarity=0.156 Sum_probs=237.6
Q ss_pred eeEEEeecCCC---CCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC--------------CCC
Q 011567 109 KEVVNFASANY---LGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--------------TPD 171 (483)
Q Consensus 109 ~~~id~~s~~~---lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g--------------~e~ 171 (483)
+++|||.++++ ..+..+|.+.+++.+++++.... .|+......++++.+|++++ .++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~------~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~ 106 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECN------GYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDN 106 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSS------SCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGG
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccC------CcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcce
Confidence 46899998853 35557899999999999763211 23222334677777877776 345
Q ss_pred EEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-------CCHHHHHHHHHHhhhhhhhccC
Q 011567 172 SILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-------NDMDSLRNTLERVTADNKRAKK 244 (483)
Q Consensus 172 ~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-------~d~~~Le~~l~~~~~~~~~~~~ 244 (483)
.+++++|++++..++++++++||.|++..+.|.++...++..|.+++.++. .|+++|++.+++
T Consensus 107 v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~---------- 176 (416)
T 1bw0_A 107 VVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDD---------- 176 (416)
T ss_dssp EEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT----------
T ss_pred EEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhcc----------
Confidence 667788889999999999999999999999998888888888998887764 266777766532
Q ss_pred ccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCC----ccccccCCCCCceeEEEcccccc
Q 011567 245 LRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGR----GLTEHCGVPVDKIDIVTAAMGHA 317 (483)
Q Consensus 245 ~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~----g~~~~~~v~~~~~Di~~~s~~K~ 317 (483)
.+++|++..+++++|.+.| +++|+++|++||+++|+||+|+.+.++ |. .......+.....+++++|++|+
T Consensus 177 ~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 254 (416)
T 1bw0_A 177 KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFK--GKDPNATFTSVADFETTVPRVILGGTAKN 254 (416)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCC--SSCTTCCCCCTTSSCCSCCEEEEEESTTT
T ss_pred CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccC--CCCCCCCccCHHHccCCCcEEEEecchhh
Confidence 1455555556888999999 999999999999999999999875543 22 22222333333346888999999
Q ss_pred ccCCC---ceeeccHH--HHHHHHhcCCce-eecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCC
Q 011567 318 LATEG---GFCTGSAR--VVDHQRLSSSGY-VFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHG 389 (483)
Q Consensus 318 lg~~G---G~i~~~~~--~~~~~~~~~~~~-~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~ 389 (483)
++..| ||++++++ +++.+......+ ..+.+.++..++++.++++... ..++.+++++++.+++.+.|+++++
T Consensus 255 ~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 334 (416)
T 1bw0_A 255 LVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIG 334 (416)
T ss_dssp TSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred CCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 87554 88887653 433322110000 0122457888888888877421 1245778889999999999998778
Q ss_pred ceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHH
Q 011567 390 LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACE 469 (483)
Q Consensus 390 ~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~ 469 (483)
+.+..+..++++++.+....-. +.....+++..+++++||.+.++..+.. +..+|+++. +++++++++++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~gi~v~~g~~f~~-----~~~iRis~~--~~~e~l~~~l~ 404 (416)
T 1bw0_A 335 LAPTMPRGAMYLMSRIDLEKYR---DIKTDVEFFEKLLEEENVQVLPGTIFHA-----PGFTRLTTT--RPVEVYREAVE 404 (416)
T ss_dssp EEECCCCBTTEEEEEECGGGBS---SCCSHHHHHHHHHHHHCEECEEGGGGTC-----TTEEEEECC--SCHHHHHHHHH
T ss_pred CcccCCCeeEEEEEeCCHHHcC---CCCCHHHHHHHHHHHCCEEEecccccCC-----CCeEEEEec--CCHHHHHHHHH
Confidence 8776555577888877421000 0001235666666556999988654321 345999994 78999999999
Q ss_pred HHHHHHHHH
Q 011567 470 SLKRISAVV 478 (483)
Q Consensus 470 ~l~~~~~~~ 478 (483)
.|++++++.
T Consensus 405 ~l~~~l~~~ 413 (416)
T 1bw0_A 405 RIKAFCQRH 413 (416)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
No 90
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.96 E-value=3.7e-28 Score=242.63 Aligned_cols=327 Identities=13% Similarity=0.115 Sum_probs=240.0
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC--CCEEEecccHHHHHh
Q 011567 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--PDSILYSYGLSTMFS 184 (483)
Q Consensus 107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~--e~~i~~~sG~~a~~~ 184 (483)
+|+.+|||+++.+ .+..+|.+.+++.+++++.+.... .|+. +...++++++++++|. ++.+++++|++|+..
T Consensus 24 ~~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~~~----~y~~-~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~ 97 (360)
T 3hdo_A 24 DIASWIKLNTNEN-PYPPSPEVVKAILEELGPDGAALR----IYPS-ASSQKLREVAGELYGFDPSWIIMANGSDEVLNN 97 (360)
T ss_dssp CCTTSEECSSCCC-SSCCCHHHHHHHHHHHTTTCGGGG----SCCC-SSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHH
T ss_pred cccceeeccCCCC-CCCCCHHHHHHHHHHHhcccchhh----cCCC-CchHHHHHHHHHHhCcCcceEEEcCCHHHHHHH
Confidence 5678999999844 344679999999999987321000 1111 1236899999999994 467777899999999
Q ss_pred hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccCh
Q 011567 185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPL 264 (483)
Q Consensus 185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L 264 (483)
++++++++||.|+++.+.|.++...++..|.+++.++.++...++++++. . +.++|+++.+++++|.+.|+
T Consensus 98 ~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~l~~~--------~-~~~~v~i~~p~nptG~~~~~ 168 (360)
T 3hdo_A 98 LIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGDFRIAGFPER--------Y-EGKVFFLTTPNAPLGPSFPL 168 (360)
T ss_dssp HHHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCTTSSBTTCCSS--------B-CSSEEEEESSCTTTCCCCCH
T ss_pred HHHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCCCCCHHHHHhh--------c-CCCEEEEeCCCCCCCCCcCH
Confidence 99999999999999999999999999999999999887642222221111 1 13477788889999999999
Q ss_pred HHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhcCCc
Q 011567 265 DELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSG 341 (483)
Q Consensus 265 ~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~ 341 (483)
+++.++|++||+++|+||+|+.+ .+ .+.....+. .+.+++++|++|++|..| ||+++++++++.++.....
T Consensus 169 ~~l~~l~~~~~~~li~De~~~~~-~~---~~~~~~~~~--~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~ 242 (360)
T 3hdo_A 169 EYIDELARRCAGMLVLDETYAEF-AE---SNALELVRR--HENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRDH 242 (360)
T ss_dssp HHHHHHHHHBSSEEEEECTTGGG-SS---CCCTHHHHH--CSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHSCS
T ss_pred HHHHHHHHHCCCEEEEECChHhh-CC---cchhHHhcc--CCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhCCC
Confidence 99999999999999999999863 22 222222211 233688899999998666 9999999999988765443
Q ss_pred eeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHH
Q 011567 342 YVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLED 421 (483)
Q Consensus 342 ~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~ 421 (483)
| +.+++.++++.++++..+...+.+++++++.+++.+.|+++ ++.+. .+.++++++.+... + ..+
T Consensus 243 --~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~------~---~~~ 307 (360)
T 3hdo_A 243 --Y--NLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI-GYDVI-PSQGNYLFATPPDR------D---GKR 307 (360)
T ss_dssp --C--CSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEC-CCSSSEEEEECTTC------C---HHH
T ss_pred --C--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEc-CCCccEEEEECCCC------C---HHH
Confidence 2 45788888888888753323467888899999999999887 88776 44677888776421 1 235
Q ss_pred HHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 422 IADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 422 i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
+.+.+ .++||.+.+...+. .+..+|++++ |++|+++++++|+++.+..
T Consensus 308 l~~~l-~~~gi~v~~~~~~~-----~~~~iRis~~---~~~e~~~l~~al~~~~~~~ 355 (360)
T 3hdo_A 308 VYDGL-YARKVLVRHFSDPL-----LAHGMRISIG---TREEMEQTLAALKEIGEGH 355 (360)
T ss_dssp HHHHH-HHTTEECBCCCSTT-----TTTSEEEECC---CHHHHHHHHHHHHHHHC--
T ss_pred HHHHH-HHCCEEEEECCCCC-----CCCEEEEEcC---CHHHHHHHHHHHHHHhccc
Confidence 66654 45699998754321 1345999985 9999999999999886543
No 91
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.96 E-value=5.1e-28 Score=245.38 Aligned_cols=331 Identities=11% Similarity=0.092 Sum_probs=239.0
Q ss_pred CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCccc--ChHHHHHHHHHHHhhhCCC--CEEEecccHHHHH
Q 011567 108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYG--TIDVHLDCEARIAKFLGTP--DSILYSYGLSTMF 183 (483)
Q Consensus 108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g--~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~ 183 (483)
+..|+|++++. . .+|.+.+++.++++++..+.. ....++ ..+...++++++++++|.+ +.++.++|++++.
T Consensus 26 ~~~~ld~~~~~---~-~~~~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~ 100 (406)
T 3cai_A 26 GWVHFDAPAGM---L-IPDSVATTVSTAFRRSGASTV-GAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLS 100 (406)
T ss_dssp SCEECBGGGCC---C-CCHHHHHHHHHHHHHCCSSSC-SSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHH
T ss_pred CeEEEeCCCcC---C-CCHHHHHHHHHHHHhcCCCCC-CccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHH
Confidence 35678877753 2 679999999999987532211 111122 2467889999999999975 4555577788888
Q ss_pred hhhhhh---ccCCcEEEEcCCchhHHHhHhhh----cCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567 184 SAIPCF---CKKGDLIVADEGVHWGIQNGLYL----SRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIV 250 (483)
Q Consensus 184 ~ai~~~---~~~gdiI~~~~~~h~s~~~g~~~----s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv 250 (483)
.++.++ .++||.|+++.+.|.++...+.. .|.+++.++.+ |+++|++.+++ ++++|+
T Consensus 101 ~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~----------~~~~v~ 170 (406)
T 3cai_A 101 LLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISK----------STRLVA 170 (406)
T ss_dssp HHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCT----------TEEEEE
T ss_pred HHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCC----------CceEEE
Confidence 888877 68899999999999887665543 58888888765 78888877642 368899
Q ss_pred EecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCCc-eeeccH
Q 011567 251 VEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGG-FCTGSA 329 (483)
Q Consensus 251 ~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~GG-~i~~~~ 329 (483)
++++++++|.+.|+++|.++|++||+++|+||+|+.|.... .+ ..+ ++|++++|++|++|+.+| ++++++
T Consensus 171 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~---~~-~~~-----~~d~~~~s~~K~~g~~~G~~~~~~~ 241 (406)
T 3cai_A 171 VNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLL---DI-RET-----DADVVTVNAHAWGGPPIGAMVFRDP 241 (406)
T ss_dssp EESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCC---CH-HHH-----CCSEEEEEGGGGTSCSCEEEEESCH
T ss_pred EeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCC---Cc-hhc-----CCCEEEeehhhhcCCCcCeEEEEeh
Confidence 99999999999999999999999999999999998653321 11 112 248999999999986678 999999
Q ss_pred HHHHHHHhcCCc------eee-cCCCcHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHhhcc
Q 011567 330 RVVDHQRLSSSG------YVF-SASLPPYLASAAITAIDVLEE----------------NPDLITKLKKNTAILRTGLSD 386 (483)
Q Consensus 330 ~~~~~~~~~~~~------~~f-s~~~~p~~~aaa~~al~~l~~----------------~~~~~~~l~~~~~~l~~~L~~ 386 (483)
++++.++..... ..| .++.++..++++.++++.+.+ .+++.++++++.+++.+.|++
T Consensus 242 ~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 321 (406)
T 3cai_A 242 SVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRS 321 (406)
T ss_dssp HHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 888776543210 112 234567777777778887764 246778888999999999998
Q ss_pred CCCceeecCC--CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccc------ccccCCCCCceEEEccCC
Q 011567 387 IHGLSIASNP--ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRS------MLDKCRLPVGIRLFVSAA 458 (483)
Q Consensus 387 ~~~~~i~~~~--~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~------~~~~~~~~~~lRi~~~~~ 458 (483)
++++.+..+. .++++.+.+... + ..++.+.+ .++||.+.+...+ ..+. ....+|++++..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~L-~~~gi~v~~g~~~~~~~~~g~~~--~~~~iRis~~~~ 389 (406)
T 3cai_A 322 LPLVMLIGRPEAQIPVVSFAVHKV------P---ADRVVQRL-ADNGILAIANTGSRVLDVLGVND--VGGAVTVGLAHY 389 (406)
T ss_dssp CTTEEECCCCSSBCSEEEEEETTB------C---HHHHHHHH-HHTTEECEECCSCHHHHHHTTTT--TTCCEEEECCTT
T ss_pred CCCeEEcCCccccCCEEEEEECCc------C---HHHHHHHH-HHCCcEEecCChHHHHHHcCCCC--CCCeEEEEeecC
Confidence 8788776432 366777777421 1 23466654 4569999876411 1100 024599999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 011567 459 HSEADLVKACESLKRI 474 (483)
Q Consensus 459 ~t~edi~~~~~~l~~~ 474 (483)
+|++|+++++++|+++
T Consensus 390 ~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 390 STMAEVDQLVRALASL 405 (406)
T ss_dssp CCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998753
No 92
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.96 E-value=3.1e-28 Score=248.34 Aligned_cols=349 Identities=15% Similarity=0.172 Sum_probs=242.5
Q ss_pred CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcC--CCCCCCCCcccChHHHHHHHHHHHhhhCC-----CCEEEecccHH
Q 011567 108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYG--VGSCGPRGFYGTIDVHLDCEARIAKFLGT-----PDSILYSYGLS 180 (483)
Q Consensus 108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g--~g~~~~~~~~g~~~~~~~l~~~La~~~g~-----e~~i~~~sG~~ 180 (483)
++.+|||+.++. ++..+|.+.+++.+++.+.. .+.+. ..|..++...+++.+.+.+|. ++.+++++|++
T Consensus 27 ~~~~i~l~~g~~-~~~~~~~v~~a~~~~~~~~~~~~~y~~---~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~ 102 (422)
T 3fvs_A 27 EHDVVNLGQGFP-DFPPPDFAVEAFQHAVSGDFMLNQYTK---TFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYG 102 (422)
T ss_dssp TSCCEECCCSSC-SSCCCHHHHHHHHHHHHSCGGGGSCCC---TTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHH
T ss_pred cCCceEeCCCCC-CCCCCHHHHHHHHHHHhCCCccCCCCC---CCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHH
Confidence 346899999853 44567999999999988622 11111 123344555555555555553 35667788889
Q ss_pred HHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----------------CHHHHHHHHHHhhhhhhhcc
Q 011567 181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----------------DMDSLRNTLERVTADNKRAK 243 (483)
Q Consensus 181 a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----------------d~~~Le~~l~~~~~~~~~~~ 243 (483)
++..++++++++||.|++..+.|.++...+...|.+++.++.+ |+++|++.++.
T Consensus 103 a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~--------- 173 (422)
T 3fvs_A 103 ALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS--------- 173 (422)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCT---------
T ss_pred HHHHHHHHHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCC---------
Confidence 9999999999999999999988888888888889988877653 56666655432
Q ss_pred CccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC-CceeEEEcccccccc
Q 011567 244 KLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV-DKIDIVTAAMGHALA 319 (483)
Q Consensus 244 ~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~-~~~Di~~~s~~K~lg 319 (483)
++++|+++++++++|.+.| +++|+++|++||+++|+||+|+.+.++ |........+.. .+.+++++|+||++|
T Consensus 174 -~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~S~sK~~g 250 (422)
T 3fvs_A 174 -RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYD--GHQHISIASLPGMWERTLTIGSAGKTFS 250 (422)
T ss_dssp -TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCT--TCCCCCGGGSTTTGGGEEEEEEHHHHHT
T ss_pred -CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccC--CCCCCChhhcccccCcEEEEecchhccC
Confidence 3678888888999999996 899999999999999999999876553 222221111211 245788899999998
Q ss_pred CCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHH-------Hhc-CcHHHHHHHHHHHHHHHhhccCC
Q 011567 320 TEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV-------LEE-NPDLITKLKKNTAILRTGLSDIH 388 (483)
Q Consensus 320 ~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~-------l~~-~~~~~~~l~~~~~~l~~~L~~~~ 388 (483)
..| ||+++++++++.+........+ +.++..++++.++++. .++ ..++.++++++.+++.+.|++.
T Consensus 251 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 327 (422)
T 3fvs_A 251 ATGWKVGWVLGPDHIMKHLRTVHQNSVF--HCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV- 327 (422)
T ss_dssp CGGGCCEEEECCHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CccceEEEEEeCHHHHHHHHHHHhhccC--CCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 666 9999999998877654322233 3467778878788864 111 2457888899999999999987
Q ss_pred CceeecCCCCCEEEEEecCCC---CC--chhhHHHHHHHHHHHHHhCCEEEEeeccccccc--CCCCCceEEEccCCCCH
Q 011567 389 GLSIASNPESPIVFLILEKST---GS--MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK--CRLPVGIRLFVSAAHSE 461 (483)
Q Consensus 389 ~~~i~~~~~~~i~~l~l~~~~---~~--~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~--~~~~~~lRi~~~~~~t~ 461 (483)
|+.+..+..+.++++.+.... .. ...+.....+++..+++++||.+.++....... ...+..+||+++. |+
T Consensus 328 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~ 405 (422)
T 3fvs_A 328 GLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK--DE 405 (422)
T ss_dssp TCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC--CH
T ss_pred CCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecC--CH
Confidence 888776667788888764210 00 000000033567777776799998865432100 0012459999765 99
Q ss_pred HHHHHHHHHHHHHHHH
Q 011567 462 ADLVKACESLKRISAV 477 (483)
Q Consensus 462 edi~~~~~~l~~~~~~ 477 (483)
++|++++++|++++++
T Consensus 406 e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 406 ATLQAMDEKLRKWKVE 421 (422)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999988754
No 93
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.96 E-value=1.8e-28 Score=250.01 Aligned_cols=336 Identities=15% Similarity=0.150 Sum_probs=240.1
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHH--h-cCCCCC-CCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHH
Q 011567 109 KEVVNFASANYLGLIGHEKLLESCTSALE--K-YGVGSC-GPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTM 182 (483)
Q Consensus 109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~--~-~g~g~~-~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~ 182 (483)
.-|+|+++. +. .+|.+.+++.+++. + |+.... .....++..+...++++++++++|.+ +++++++|++|+
T Consensus 23 ~iyld~~~~---~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~ 98 (423)
T 3lvm_A 23 PIYLDYSAT---TP-VDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESD 98 (423)
T ss_dssp SEECBTTTC---CC-CCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHH
T ss_pred CEeecCCCc---CC-CCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHH
Confidence 357776665 33 67999999998887 3 332221 12222334567789999999999976 677778999999
Q ss_pred Hhhhhhhcc----CCcEEEEcCCchhHHHhHh---hhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567 183 FSAIPCFCK----KGDLIVADEGVHWGIQNGL---YLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIV 250 (483)
Q Consensus 183 ~~ai~~~~~----~gdiI~~~~~~h~s~~~g~---~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv 250 (483)
..+++++.. +||.|+++...|.++..++ ...|.+++.++.+ |+++|++.+++ ++++|+
T Consensus 99 ~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----------~~~~v~ 168 (423)
T 3lvm_A 99 NLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRD----------DTILVS 168 (423)
T ss_dssp HHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCT----------TEEEEE
T ss_pred HHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCC----------CcEEEE
Confidence 999988773 7999999999998887766 4458888888765 77888777643 368999
Q ss_pred EecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccH
Q 011567 251 VEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSA 329 (483)
Q Consensus 251 ~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~ 329 (483)
++++++++|.+.|+++|+++|++||+++|+||++++|... +++...++|++++|++|.+|+.| |++++++
T Consensus 169 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~---------~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~ 239 (423)
T 3lvm_A 169 IMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLP---------IDLSQLKVDLMSFSGHKIYGPKGIGALYVRR 239 (423)
T ss_dssp CCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSC---------CCTTTSCCSEEEEESTTTTSCSSCEEEEECB
T ss_pred EeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCC---------cChhhcCCCEEEechHHhcCCCCeEEEEEec
Confidence 9999999999999999999999999999999999875432 11211235899999999888665 8888877
Q ss_pred HHHHHHHhcCCc-----eeecCCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHhhccCCCceeecCCC---CCE
Q 011567 330 RVVDHQRLSSSG-----YVFSASLPPYLASAAITAIDVLEEN-PDLITKLKKNTAILRTGLSDIHGLSIASNPE---SPI 400 (483)
Q Consensus 330 ~~~~~~~~~~~~-----~~fs~~~~p~~~aaa~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~---~~i 400 (483)
+..+.++....+ .....+.++..++++.++++.+.+. +++.++++++.+++.+.|++++++.+..+.. ..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~ 319 (423)
T 3lvm_A 240 KPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNI 319 (423)
T ss_dssp TTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTE
T ss_pred cccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCe
Confidence 665544332111 0112345677777777788776542 5688899999999999999888888775433 357
Q ss_pred EEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccccc---------CCC-----CCceEEEccCCCCHHHHHH
Q 011567 401 VFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK---------CRL-----PVGIRLFVSAAHSEADLVK 466 (483)
Q Consensus 401 ~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~---------~~~-----~~~lRi~~~~~~t~edi~~ 466 (483)
+.+.+... + ..++.+. |.+ |.+.++....... ... +..||++++..+|++|+++
T Consensus 320 ~~~~~~~~------~---~~~l~~~-l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~ 387 (423)
T 3lvm_A 320 LNVSFNYV------E---GESLIMA-LKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDY 387 (423)
T ss_dssp EEEEETTS------C---HHHHHHH-TTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHH
T ss_pred EEEEeCCC------C---HHHHHHH-Hhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHH
Confidence 77777321 1 1244553 443 7666543211100 000 1349999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 011567 467 ACESLKRISAVVL 479 (483)
Q Consensus 467 ~~~~l~~~~~~~~ 479 (483)
++++|+++++++.
T Consensus 388 ~~~~l~~~~~~~~ 400 (423)
T 3lvm_A 388 TIELVRKSIGRLR 400 (423)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998764
No 94
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.96 E-value=5.9e-28 Score=245.62 Aligned_cols=342 Identities=14% Similarity=0.130 Sum_probs=234.2
Q ss_pred eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----C-CEEEecccHHHHHh
Q 011567 110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----P-DSILYSYGLSTMFS 184 (483)
Q Consensus 110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e-~~i~~~sG~~a~~~ 184 (483)
.+|||.++.. .+..+|.+.+++.+++++...+.. ...|..++...+++.+.+.+|. + +.+++++|++|+..
T Consensus 26 ~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y~---~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~ 101 (411)
T 2o0r_A 26 GAVNLGQGFP-DEDGPPKMLQAAQDAIAGGVNQYP---PGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAA 101 (411)
T ss_dssp TCEESSCSSC-SSCCCHHHHHHHHHHHHTTCCSCC---CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHH
T ss_pred CeeeccCcCC-CCCCCHHHHHHHHHHHhcCCCCCC---CCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHH
Confidence 4789988743 333579999999999976211111 1122333444444444444463 3 56667888999999
Q ss_pred hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC--------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccC
Q 011567 185 AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ 256 (483)
Q Consensus 185 ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~--------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~ 256 (483)
+++++.++||.|+++.+.|.++...+...|.+++.++. .|+++|++.++. ++++|+++++++
T Consensus 102 ~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~----------~~~~v~l~~~~n 171 (411)
T 2o0r_A 102 AVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTP----------RTRALIINSPHN 171 (411)
T ss_dssp HHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCT----------TEEEEEEESSCT
T ss_pred HHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhcc----------CceEEEEeCCCC
Confidence 99999999999999999998888888888988877764 367777776632 267778888889
Q ss_pred CCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCC-CCceeEEEccccccccCCC---ceeeccH
Q 011567 257 NSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVP-VDKIDIVTAAMGHALATEG---GFCTGSA 329 (483)
Q Consensus 257 ~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~-~~~~Di~~~s~~K~lg~~G---G~i~~~~ 329 (483)
++|.+.| +++|+++|++||+++|+||+|+.+.++ |.+......+. ..++|++++|++|++|..| ||+++++
T Consensus 172 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 249 (411)
T 2o0r_A 172 PTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFD--HARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGPA 249 (411)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCT--TCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECCH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccC--CCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeCH
Confidence 9999988 599999999999999999999976553 33222222221 1356899999999998655 9999999
Q ss_pred HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCC
Q 011567 330 RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS 408 (483)
Q Consensus 330 ~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~ 408 (483)
++++.++.......|+. ++...+++.++++..++ .+++.++++++.+++.+.|++. |+++..+..+.++++.+...
T Consensus 250 ~~~~~l~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~ 326 (411)
T 2o0r_A 250 ELIAGVRAAKQYLSYVG--GAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI-GFAVHDSYGTYFLCADPRPL 326 (411)
T ss_dssp HHHHHHHHHHHHHTSCC--CTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH-TCEECCCCBSSEEEEECGGG
T ss_pred HHHHHHHHHHhhccCCC--ChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc-CCEecCCCeeEEEEEecCCC
Confidence 98887765433223333 44555666667764321 2457788889999999999886 88876554556788887531
Q ss_pred CCCchhhHHHHHHHHHHHHHhCCEEEEeeccccccc--------CCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK--------CRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 409 ~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~--------~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
.+ .+ ..++++.+++++||.+.+........ ...+..+||++. .+++|+++++++|++++++.
T Consensus 327 ~~---~~---~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~~~~~ 396 (411)
T 2o0r_A 327 GY---DD---STEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIRRLSVLAERP 396 (411)
T ss_dssp TC---CC---HHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHHHHGGGGC--
T ss_pred CC---CC---HHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHhcc
Confidence 00 01 23567766655699998764321100 000234999986 48999999999999876554
No 95
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.96 E-value=2.4e-28 Score=245.21 Aligned_cols=333 Identities=12% Similarity=0.029 Sum_probs=234.4
Q ss_pred CCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----CCEEEecccHHH
Q 011567 107 SGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PDSILYSYGLST 181 (483)
Q Consensus 107 ~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e~~i~~~sG~~a 181 (483)
+| ++|||+++ +.++ .+|.+.+++.+++... .+.+ ...|..++..++++.+.+.+|. ++.++.++|+++
T Consensus 22 ~g-~~i~l~~~~~~~~--~~~~v~~a~~~~~~~~-~~y~---~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~a 94 (376)
T 3ezs_A 22 KK-RGLDLGIGEPQFE--TPKFIQDALKNHTHSL-NIYP---KSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREV 94 (376)
T ss_dssp SS-CCCBCSSCCCCSC--CCHHHHHHHHTTGGGG-GSCC---CTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHH
T ss_pred cC-CEEEeCCCCCCCC--CCHHHHHHHHHhhhhc-CCCC---CCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHH
Confidence 56 89999998 3444 5689999988877331 1111 1223445555566666555574 456677888999
Q ss_pred HHhhhhhhccC--CcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHH----HHHHHHHHhhhhhhhccCccEEEEEeccc
Q 011567 182 MFSAIPCFCKK--GDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMD----SLRNTLERVTADNKRAKKLRRYIVVEAVY 255 (483)
Q Consensus 182 ~~~ai~~~~~~--gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~----~Le~~l~~~~~~~~~~~~~~~~iv~e~v~ 255 (483)
+..++++++++ ||.|+++.+.|.++...+...|.+++.++.++.+ ++++.+.+ ++++|++..++
T Consensus 95 l~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~v~~~~p~ 164 (376)
T 3ezs_A 95 LFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTPSLNEKELQ----------EVDLVILNSPN 164 (376)
T ss_dssp HHHHHHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSCCCCCHHHHH----------HCSEEEECSSC
T ss_pred HHHHHHHHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcchhHHhhhcc----------CCCEEEEcCCC
Confidence 99999999999 9999999999999999999999999988876432 45555543 14566666778
Q ss_pred CCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccC---CCCCceeEEEccccccccCCC---ceee
Q 011567 256 QNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCG---VPVDKIDIVTAAMGHALATEG---GFCT 326 (483)
Q Consensus 256 ~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~---v~~~~~Di~~~s~~K~lg~~G---G~i~ 326 (483)
+++|.+.| +++|+++|++||+++|+||+|+.+..+.....+....+ .+..+.+++++|+||++|..| ||++
T Consensus 165 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~ 244 (376)
T 3ezs_A 165 NPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIA 244 (376)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEE
T ss_pred CCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEe
Confidence 88999988 77888889999999999999998655432222222110 001345788999999998666 9999
Q ss_pred ccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEec
Q 011567 327 GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILE 406 (483)
Q Consensus 327 ~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~ 406 (483)
+++++++.++.......+ +.++..++++.++++..+...+..++++++.+++.+.|+ ++. .+..+.++++.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~---~~~--~~~~~~~~~~~~~ 317 (376)
T 3ezs_A 245 GDSRLLEKYKAFRAYLGY--TSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK---NTL--IYPYSFYVYLPVQ 317 (376)
T ss_dssp ECHHHHHHHHHHHTTTCC--CCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST---TCC--CCSBSSEEEEECS
T ss_pred eCHHHHHHHHHHHhhhcC--CCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc---CCC--CCCcceEEEEECC
Confidence 999999887765443333 457888888878877432234567778888888888886 444 3446778888774
Q ss_pred CCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
...++++.+++++||.+.++..+... ...+..+||+++. |++|+++++++|++++++
T Consensus 318 -----------~~~~~~~~l~~~~gi~v~~g~~~~~~-~~~~~~iRis~~~--~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 318 -----------NGENFAKTLYQNEGIITLPALYLGRN-RIGADYVRLALVY--DTPLLEKPLEIIETYREN 374 (376)
T ss_dssp -----------CHHHHHHHHHHHHCCBCEEGGGGCST-TTTTTEEEEECCS--CHHHHHHHHHHHHHHHCC
T ss_pred -----------CHHHHHHHHHHhCCEEEeCcHHhCCC-CCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 12356777666469999887654321 0113459999873 999999999999988753
No 96
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.96 E-value=4.4e-28 Score=243.02 Aligned_cols=334 Identities=15% Similarity=0.115 Sum_probs=234.1
Q ss_pred EEEeecCCCCCCCCChHHHHHHHHHHHhcCCC-CCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhhh
Q 011567 111 VVNFASANYLGLIGHEKLLESCTSALEKYGVG-SCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIP 187 (483)
Q Consensus 111 ~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g-~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~ 187 (483)
|+|++++ +. .+|.+.+++.+++.+.... .......++..+...++++++++++|.+ +.+++++|++++..+++
T Consensus 3 yld~~~~---~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~ 78 (382)
T 4hvk_A 3 YFDYTSA---KP-VDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAII 78 (382)
T ss_dssp BCBTTTC---CC-CCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHH
T ss_pred eecCCCc---CC-CCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHH
Confidence 5666654 23 6799999999999873211 1111111234567789999999999975 35566888899999999
Q ss_pred hhc----cCCcEEEEcCCchhHHHhHhhh---cCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEeccc
Q 011567 188 CFC----KKGDLIVADEGVHWGIQNGLYL---SRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVY 255 (483)
Q Consensus 188 ~~~----~~gdiI~~~~~~h~s~~~g~~~---s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~ 255 (483)
++. ++||.|+++...|.++...+.. .|.+++.++.+ |+++|++.+++ ++++|++++++
T Consensus 79 ~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----------~~~~v~~~~~~ 148 (382)
T 4hvk_A 79 GYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD----------DTILVSVQHAN 148 (382)
T ss_dssp HHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT----------TEEEEECCSBC
T ss_pred HhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc----------CceEEEEECCC
Confidence 988 8999999999999988776554 58888888765 77888776642 36899999999
Q ss_pred CCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHHHHH
Q 011567 256 QNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDH 334 (483)
Q Consensus 256 ~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~~~~ 334 (483)
+++|.+.|+++|.++|++||+ +|+||+|++|... +++...++|++++|++|.+|+.| |+++.+++. .
T Consensus 149 nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~--~ 216 (382)
T 4hvk_A 149 NEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIE---------VDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--K 216 (382)
T ss_dssp TTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBC---------CCHHHHTCSEEEEESGGGTSCTTCEEEEEETTC--C
T ss_pred CCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCC---------CCchhcCCCEEEEeHHHhcCCCceEEEEEcCcc--C
Confidence 999999999999999999999 9999999875432 11111134899999999888654 777665543 1
Q ss_pred HHhcCC----ce-eecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCCC---CCEEEEEe
Q 011567 335 QRLSSS----GY-VFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNPE---SPIVFLIL 405 (483)
Q Consensus 335 ~~~~~~----~~-~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~---~~i~~l~l 405 (483)
++.... .. ....+.++..++++.++++.+.+ .++..++.+++.+++.+.|++++++.+..+.. ..++.+.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 296 (382)
T 4hvk_A 217 LQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRF 296 (382)
T ss_dssp CCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEE
T ss_pred cCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEE
Confidence 111110 00 11234567777777777776543 25678889999999999999888888764432 24777776
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccC---------CC-----CCceEEEccCCCCHHHHHHHHHHH
Q 011567 406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKC---------RL-----PVGIRLFVSAAHSEADLVKACESL 471 (483)
Q Consensus 406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~---------~~-----~~~lRi~~~~~~t~edi~~~~~~l 471 (483)
... + ..++.+. |.++||.+.++..+..... .. +..||++++..+|++|+++++++|
T Consensus 297 ~~~------~---~~~~~~~-l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l 366 (382)
T 4hvk_A 297 SYI------E---GESIVLS-LDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVL 366 (382)
T ss_dssp TTC------C---HHHHHHH-HHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCC------C---HHHHHHH-HHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 421 1 2245665 4556999887543221100 00 245999999999999999999999
Q ss_pred HHHHHHHHh
Q 011567 472 KRISAVVLR 480 (483)
Q Consensus 472 ~~~~~~~~~ 480 (483)
+++++++.+
T Consensus 367 ~~~~~~~~~ 375 (382)
T 4hvk_A 367 PGVIERLRS 375 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987654
No 97
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.96 E-value=1.4e-27 Score=238.91 Aligned_cols=320 Identities=11% Similarity=0.098 Sum_probs=239.2
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC---CCEEEecccHHHHHhh
Q 011567 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT---PDSILYSYGLSTMFSA 185 (483)
Q Consensus 109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~---e~~i~~~sG~~a~~~a 185 (483)
+++|||+++.. .+..+|++.+++.+++.+.+.. .|+. ....++++++++++|. ++.+++++|++++..+
T Consensus 30 ~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~------~y~~-~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~ 101 (367)
T 3euc_A 30 HGLVKLDAMEN-PYRLPPALRSELAARLGEVALN------RYPV-PSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISML 101 (367)
T ss_dssp TTCEECCSSCC-CCCCCHHHHHHHHHHHHHHHTT------CSCC-CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHH
T ss_pred CCeeEccCCCC-CCCCCHHHHHHHHHHhhhhhhh------cCCC-CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHH
Confidence 57899999842 2335799999999998853221 1221 2357899999999997 4566668888999999
Q ss_pred hhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCC
Q 011567 186 IPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQ 260 (483)
Q Consensus 186 i~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~ 260 (483)
++++.++||.|++..+.|.++...++..|.+++.++.+ |+++|++.+++. ++++|+++.+++++|.
T Consensus 102 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---------~~~~v~~~~~~nptG~ 172 (367)
T 3euc_A 102 ALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEH---------QPAIVYLAYPNNPTGN 172 (367)
T ss_dssp HHHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHH---------CCSEEEEESSCTTTCC
T ss_pred HHHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHHHhhcc---------CCCEEEEcCCCCCCCC
Confidence 99999999999999999988888888889998888743 788898888653 1567777788888999
Q ss_pred ccC---hHHHHHHHHHc--CcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHH
Q 011567 261 IAP---LDELIRLKEKY--RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVV 332 (483)
Q Consensus 261 i~~---L~~l~~l~~k~--~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~ 332 (483)
+.| +++|+++|++| |+++|+||+|+.+. + .+.....+. .+.+++++|++|+ +..| ||++++++++
T Consensus 173 ~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~-~---~~~~~~~~~--~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~ 245 (367)
T 3euc_A 173 LFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFA-Q---ESWMSRLTD--FGNLLVMRTVSKL-GLAGIRLGYVAGDPQWL 245 (367)
T ss_dssp CCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSS-S---CCSGGGGGT--CTTEEEEEECCCT-TSCSCCEEEEEECHHHH
T ss_pred CCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhc-c---cchHHHHhh--CCCEEEEecchhh-cccccCceeeeeCHHHH
Confidence 976 78888889999 99999999998643 1 222222222 3346888899999 6555 8999999999
Q ss_pred HHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCc
Q 011567 333 DHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSM 412 (483)
Q Consensus 333 ~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~ 412 (483)
+.++.....+ +.+++.++++.++++..+...+..++++++.+++.+.|++++++.+. ++.++++++.++
T Consensus 246 ~~~~~~~~~~----~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~------ 314 (367)
T 3euc_A 246 EQLDKVRPPY----NVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGVTVF-PSAANFLLARVP------ 314 (367)
T ss_dssp HHHGGGCCSS----CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC-CCSSSEEEEECS------
T ss_pred HHHHHhCCCC----CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC------
Confidence 8887654432 35788888888888763223467888899999999999988888865 446778888774
Q ss_pred hhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567 413 KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS 475 (483)
Q Consensus 413 ~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~ 475 (483)
+ ..++.+. |.++||.+.+...+.. ..+..+|++++ |++|+++++++|++++
T Consensus 315 --~---~~~l~~~-l~~~gi~v~~~~~~~~---~~~~~iRis~~---~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 315 --D---AAQTFDR-LLARKVLIKNVSKMHP---LLANCLRVTVS---TPEENAQFLEAFAASL 365 (367)
T ss_dssp --C---HHHHHHH-HHTTTEECEECGGGCG---GGTTEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred --C---HHHHHHH-HHHCCeEEEECCccCC---CCCCEEEEecC---CHHHHHHHHHHHHHHh
Confidence 1 2345665 4567999987654210 01245999975 9999999999998875
No 98
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.96 E-value=1.4e-27 Score=238.07 Aligned_cols=321 Identities=15% Similarity=0.168 Sum_probs=232.3
Q ss_pred ECCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC--CCEEEecccHHHH
Q 011567 106 ISGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT--PDSILYSYGLSTM 182 (483)
Q Consensus 106 ~~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~--e~~i~~~sG~~a~ 182 (483)
.+|+++|||+++ ++++ .+|.+.+++.++++++.. |. .+...+++++++++++. ++.+++++|++++
T Consensus 23 ~~~~~~idl~~~~~~~~--~~~~v~~a~~~~~~~~~~--------y~-~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al 91 (361)
T 3ftb_A 23 FKGRELLDYSSNINPLG--IPKSFLNNIDEGIKNLGV--------YP-DVNYRRLNKSIENYLKLKDIGIVLGNGASEII 91 (361)
T ss_dssp -----CEETTCCCCTTC--SCHHHHTTHHHHHHGGGS--------CC-CTTCHHHHHHHHHHHTCCSCEEEEESSHHHHH
T ss_pred cCCCCEEEecCCCCCCC--CCHHHHHHHHHHHHHhcC--------CC-CccHHHHHHHHHHHhCCCcceEEEcCCHHHHH
Confidence 489999999998 6665 469999999999887321 11 12347899999999985 3455558888999
Q ss_pred HhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCC
Q 011567 183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN 257 (483)
Q Consensus 183 ~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~ 257 (483)
..+++++ |.|+++.+.|.++...++..|.+++.++.+ |++++++.+++ +++|+++.++++
T Consensus 92 ~~~~~~~----d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~-----------~~~v~i~~p~np 156 (361)
T 3ftb_A 92 ELSISLF----EKILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDYEDIISKIDD-----------VDSVIIGNPNNP 156 (361)
T ss_dssp HHHHTTC----SEEEEEESCCTHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHTTT-----------CSEEEEETTBTT
T ss_pred HHHHHHc----CcEEEecCChHHHHHHHHHcCCeEEEeecCcccCCCHHHHHHhccC-----------CCEEEEeCCCCC
Confidence 9999988 788888888888888899899998888743 45666666543 346667777888
Q ss_pred CCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceee-ccHH
Q 011567 258 SGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCT-GSAR 330 (483)
Q Consensus 258 ~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~-~~~~ 330 (483)
+|.+.| +++|+++|++||+++|+||+|+.+..+ .+.+.....+. .+.+++++|++|++|..| ||++ ++++
T Consensus 157 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~ 233 (361)
T 3ftb_A 157 NGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PSSSFVGEIKN--YSCLFIIRAMTKFFAMPGIRFGYGITNNKE 233 (361)
T ss_dssp TTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TTSSSGGGTTT--CSSEEEEEESSSTTSCGGGCCEEEEESCHH
T ss_pred CCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cccchhHhccc--CCCEEEEeeChhhcCCCCcceeEEEeCCHH
Confidence 999988 677888899999999999999876665 23333343333 233688899999998555 8887 8999
Q ss_pred HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCce-eecCCCCCEEEEEecCCC
Q 011567 331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLS-IASNPESPIVFLILEKST 409 (483)
Q Consensus 331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~-i~~~~~~~i~~l~l~~~~ 409 (483)
+++.++.....+ +.+++.++++.++++..+..++.+++++++.+++.+.|++++++. +. .+.++++++.+...
T Consensus 234 ~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~- 307 (361)
T 3ftb_A 234 IAAKIKAKQNPW----NINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVF-SPHANFVLCRLENI- 307 (361)
T ss_dssp HHHHHHTTSCTT----CSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEE-CCSSSEEEEEESSS-
T ss_pred HHHHHHhhCCCC----CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceec-CCCCeEEEEEcCCC-
Confidence 999887654432 457888888877776422224577888899999999999888887 65 44678888887531
Q ss_pred CCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567 410 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 476 (483)
Q Consensus 410 ~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~ 476 (483)
+ ..++.+.+++ +||.+.++..... ..+..+|++++ ++++++++.++|+++.+
T Consensus 308 -----~---~~~l~~~l~~-~gi~v~~g~~~~~---~~~~~iRis~~---~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 308 -----S---GEKLYDSLLK-EDIVIRRCCNFIG---LDDSFVRFAIK---DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp -----C---HHHHHHHHHT-TTEECEECTTSTT---CCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred -----C---HHHHHHHHHH-CCeEEeeCccCCC---CCCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence 1 2356776555 5999987653211 01245999985 88999999999988764
No 99
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.96 E-value=5.5e-28 Score=243.44 Aligned_cols=317 Identities=16% Similarity=0.163 Sum_probs=230.1
Q ss_pred CCCCCChHHHHHHHHHHHhcCC-CCCCCCCcccC-hHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhhhhh-ccCCc
Q 011567 120 LGLIGHEKLLESCTSALEKYGV-GSCGPRGFYGT-IDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIPCF-CKKGD 194 (483)
Q Consensus 120 lG~~~~p~i~~a~~~~l~~~g~-g~~~~~~~~g~-~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~~~-~~~gd 194 (483)
.|. .++.+.+++.+++++... +..+.+ .|.. .+...++++.|++++|.+ +.+++++|++|+..+++++ .++||
T Consensus 25 ~~~-~~~~v~~a~~~~~~~~~~~~~~~~~-~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~gd 102 (390)
T 1elu_A 25 QGI-LPTVALEAITAMYGYLQENGPFSIA-ANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGD 102 (390)
T ss_dssp CCC-CCHHHHHHHHHHHHHHHHHCSSSHH-HHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTC
T ss_pred cCC-CCHHHHHHHHHHHHHHhccCCcchh-hHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCCCCC
Confidence 455 568899999999886421 111000 1222 357789999999999975 5677789999999999999 78999
Q ss_pred EEEEcCCchhHHHhH----hhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC
Q 011567 195 LIVADEGVHWGIQNG----LYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP 263 (483)
Q Consensus 195 iI~~~~~~h~s~~~g----~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~ 263 (483)
.|++..+.|.+...+ .+..|.+++.++.+ |+++|++.++ + ++++|+++++++++|.+.|
T Consensus 103 ~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~---~-------~~~~v~~~~~~nptG~~~~ 172 (390)
T 1elu_A 103 EILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG---P-------KTRLVILSHLLWNTGQVLP 172 (390)
T ss_dssp EEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC---T-------TEEEEEEESBCTTTCCBCC
T ss_pred EEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcC---C-------CceEEEEeccccCCceecC
Confidence 999999988886654 35568888888763 4455554442 2 3688899999999999999
Q ss_pred hHHHHHHHH----HcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccc-cccCCC-ceeeccHHHHHHHHh
Q 011567 264 LDELIRLKE----KYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGH-ALATEG-GFCTGSARVVDHQRL 337 (483)
Q Consensus 264 L~~l~~l~~----k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K-~lg~~G-G~i~~~~~~~~~~~~ 337 (483)
+++|+++|+ +||+++|+||+|++|..+ .++....+|++++|++| .+|+.| |++++++++++.++.
T Consensus 173 ~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~---------~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~ 243 (390)
T 1elu_A 173 LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP---------LDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINP 243 (390)
T ss_dssp HHHHHHHHHHCCSSSCCEEEEECTTTBTTBC---------CCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCC
T ss_pred HHHHHHHHhhhhhhcCcEEEEEcccccCCcC---------CChhhcCCCEEEccccccccCCCceEEEEECHHhHhhcCC
Confidence 999999999 999999999999875432 12222345899999999 456666 899999888776543
Q ss_pred cCCc------------e-------ee-cCCCcHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHhhccCCCceeec
Q 011567 338 SSSG------------Y-------VF-SASLPPYLASAAITAIDVLEE---NPDLITKLKKNTAILRTGLSDIHGLSIAS 394 (483)
Q Consensus 338 ~~~~------------~-------~f-s~~~~p~~~aaa~~al~~l~~---~~~~~~~l~~~~~~l~~~L~~~~~~~i~~ 394 (483)
...+ | .+ .++.++..++++.++++.+.+ .+++.++++++.+++.+.|++++|+++..
T Consensus 244 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 323 (390)
T 1elu_A 244 TYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLA 323 (390)
T ss_dssp CSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESC
T ss_pred ccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEec
Confidence 2111 1 11 224566767777777876653 34678899999999999999877888764
Q ss_pred --CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHH
Q 011567 395 --NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLK 472 (483)
Q Consensus 395 --~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~ 472 (483)
...++++.+.++... + ..++.+.+ .++||.+.+... +..+||+++..+|++|+++++++|+
T Consensus 324 ~~~~~~~~~~~~~~~~~-----~---~~~~~~~l-~~~gi~v~~~~~--------~~~iRis~~~~~~~~~i~~~~~~l~ 386 (390)
T 1elu_A 324 TSAPQAGLVSFTVDSPL-----G---HRAIVQKL-EEQRIYLRTIAD--------PDCIRACCHYITDEEEINHLLARLA 386 (390)
T ss_dssp SSCCSSSEEEEEECSSS-----C---HHHHHHHH-HHTTEECEEETT--------TTEEEEECCTTCCHHHHHHHHHHHT
T ss_pred CccccccEEEEEcCCCC-----C---HHHHHHHH-HHCCEEEEecCC--------CCeEEEecccCCCHHHHHHHHHHHH
Confidence 236778888774211 1 23566665 456999987641 2459999999999999999999987
Q ss_pred HH
Q 011567 473 RI 474 (483)
Q Consensus 473 ~~ 474 (483)
++
T Consensus 387 ~~ 388 (390)
T 1elu_A 387 DF 388 (390)
T ss_dssp TC
T ss_pred hh
Confidence 53
No 100
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.96 E-value=4.6e-28 Score=241.62 Aligned_cols=323 Identities=13% Similarity=0.147 Sum_probs=231.7
Q ss_pred eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccC-h-HHHHHHHHHHHhhhCCC----CEEEecccHHHHH
Q 011567 110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGT-I-DVHLDCEARIAKFLGTP----DSILYSYGLSTMF 183 (483)
Q Consensus 110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~-~-~~~~~l~~~La~~~g~e----~~i~~~sG~~a~~ 183 (483)
+++||..+ +++ .+|++.+++.+++ +. .++. . +...++++++++++|.+ +.+++++|++|+.
T Consensus 4 ~~~~~~~g-p~~--~~~~v~~a~~~~~---~~-------~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~ 70 (366)
T 1m32_A 4 NYLLLTPG-PLT--TSRTVKEAMLFDS---CT-------WDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVE 70 (366)
T ss_dssp -CEECSSS-SCC--CCHHHHHTTCCCC---CT-------TSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHH
T ss_pred ccccccCC-CcC--CCHHHHHHHhhhh---cC-------CCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHH
Confidence 36788777 333 5688888877632 21 1111 1 56789999999999943 3667789999999
Q ss_pred hhhhhhccCCcE-EEEcCCchhH-HHhHhhhcCCeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccC
Q 011567 184 SAIPCFCKKGDL-IVADEGVHWG-IQNGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ 256 (483)
Q Consensus 184 ~ai~~~~~~gdi-I~~~~~~h~s-~~~g~~~s~~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~ 256 (483)
.+++++.++||. |+.+.++|.+ +...+...|.+++.++. .|+++|++.+++.. .+++|++....+
T Consensus 71 ~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~--------~~~~v~~~~~~n 142 (366)
T 1m32_A 71 AVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADP--------TISHIAMVHSET 142 (366)
T ss_dssp HHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCT--------TCCEEEEESEET
T ss_pred HHHHHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCC--------CeEEEEEecccC
Confidence 999999888885 4566688876 44556667877776653 57889998886521 145676777778
Q ss_pred CCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCC-ceeeccHHHHHH
Q 011567 257 NSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEG-GFCTGSARVVDH 334 (483)
Q Consensus 257 ~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~G-G~i~~~~~~~~~ 334 (483)
++|.+.|+++|+++|++||+++|+||+|++|..+ +++...++|++++|++|++ |+.| |++++++++++.
T Consensus 143 ptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~---------~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~ 213 (366)
T 1m32_A 143 TTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIP---------MDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAA 213 (366)
T ss_dssp TTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSC---------CCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTT
T ss_pred CcceecCHHHHHHHHHHcCCEEEEECCccccCcC---------ccccccCccEEEecCcccccCCCceEEEEECHHHHHh
Confidence 8999999999999999999999999999876432 1222224589999999988 5556 999999988876
Q ss_pred HHhcCCceee----------------cCCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhhccCCCceeecC
Q 011567 335 QRLSSSGYVF----------------SASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGLSIASN 395 (483)
Q Consensus 335 ~~~~~~~~~f----------------s~~~~p~~~aaa~~al~~l~~~---~~~~~~l~~~~~~l~~~L~~~~~~~i~~~ 395 (483)
++....++.+ ..+.++..++++.++++.+.+. ++++++++++.+++.+.|+++ ++++..+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~ 292 (366)
T 1m32_A 214 CKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLD 292 (366)
T ss_dssp CTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSC
T ss_pred hcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-CCeeccC
Confidence 6543222211 1356778888888888877542 568889999999999999887 7776543
Q ss_pred --CCCC-EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHH
Q 011567 396 --PESP-IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLK 472 (483)
Q Consensus 396 --~~~~-i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~ 472 (483)
..++ ++++.+++..+ .+ ..++.+.+++ +||.+.+...+. +..+|++++..+|++|+++++++|+
T Consensus 293 ~~~~~~~~~~~~~~~~~~---~~---~~~~~~~l~~-~gi~v~~~~~~~------~~~iRi~~~~~~~~~~i~~~~~~l~ 359 (366)
T 1m32_A 293 DELHSPIITAFYSPEDPQ---YR---FSEFYRRLKE-QGFVIYPGKVSQ------SDCFRIGNIGEVYAADITALLTAIR 359 (366)
T ss_dssp GGGBCSSEEEEECCCCTT---CC---HHHHHHHHHH-TTEECEECCCSS------SCEEEEECCSSCCHHHHHHHHHHHH
T ss_pred chhcCceEEEEEcCccCC---CC---HHHHHHHHHH-CCEEEECCcCCC------CCEEEEecCCCCCHHHHHHHHHHHH
Confidence 1344 78888753101 01 2356776555 599998754321 3459999999999999999999999
Q ss_pred HHHH
Q 011567 473 RISA 476 (483)
Q Consensus 473 ~~~~ 476 (483)
++++
T Consensus 360 ~~~~ 363 (366)
T 1m32_A 360 TAMY 363 (366)
T ss_dssp HHCT
T ss_pred HHHH
Confidence 8764
No 101
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.96 E-value=1.1e-27 Score=243.25 Aligned_cols=341 Identities=14% Similarity=0.146 Sum_probs=236.4
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC--------C-CCEEEecccH
Q 011567 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--------T-PDSILYSYGL 179 (483)
Q Consensus 109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g--------~-e~~i~~~sG~ 179 (483)
.++|||+.++. .+..+|.+.+++.+++.+.... .|+......++++.++++++ . ++.+++++|+
T Consensus 23 ~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~ 95 (410)
T 3e2y_A 23 PSVVNLGQGFP-DISPPSYVKEELSKAAFIDNMN------QYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAY 95 (410)
T ss_dssp TTSEECSSCCC-CSCCCHHHHHHHHHHHTCGGGG------SCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHH
T ss_pred CCeEEecCCCC-CCCCCHHHHHHHHHHHhCcccc------CCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcH
Confidence 46899998853 5556799999999998753110 11111113455555555554 2 4566778888
Q ss_pred HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC----------------CHHHHHHHHHHhhhhhhhcc
Q 011567 180 STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----------------DMDSLRNTLERVTADNKRAK 243 (483)
Q Consensus 180 ~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----------------d~~~Le~~l~~~~~~~~~~~ 243 (483)
+++..++++++++||.|++..+.|..+...+...|.+++.++.+ |+++|++.++.
T Consensus 96 ~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~--------- 166 (410)
T 3e2y_A 96 GSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS--------- 166 (410)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCT---------
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCC---------
Confidence 99999999999999999999999989888888889988877653 66777665532
Q ss_pred CccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCC-CCceeEEEcccccccc
Q 011567 244 KLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVP-VDKIDIVTAAMGHALA 319 (483)
Q Consensus 244 ~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~-~~~~Di~~~s~~K~lg 319 (483)
++++|+++++++++|.+.+ +++|+++|++||+++|+||+|+.+.++ |.......... ..+.++++.|+||++|
T Consensus 167 -~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~S~sK~~g 243 (410)
T 3e2y_A 167 -KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYT--GHTHVKIATLPGMWERTITIGSAGKTFS 243 (410)
T ss_dssp -TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCT--TCCCCCGGGSTTCGGGEEEEEEHHHHSS
T ss_pred -CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccC--CCCCCCHHHcCCccCeEEEEecchhhcC
Confidence 3678888899999999964 899999999999999999999876543 22221111111 1245688899999998
Q ss_pred CCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH-------h-cCcHHHHHHHHHHHHHHHhhccCC
Q 011567 320 TEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL-------E-ENPDLITKLKKNTAILRTGLSDIH 388 (483)
Q Consensus 320 ~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l-------~-~~~~~~~~l~~~~~~l~~~L~~~~ 388 (483)
..| ||+++++++++.++.......+ +.++..++++.++++.. . ...++.++++++.+++.+.|+++
T Consensus 244 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 320 (410)
T 3e2y_A 244 VTGWKLGWSIGPAHLIKHLQTVQQNSFY--TCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV- 320 (410)
T ss_dssp CGGGCCEEEECCHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCceEEEEEECHHHHHHHHHHHHhhcc--CCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 666 9999999998887654322233 34677777777777641 1 12457788889999999999987
Q ss_pred CceeecCCCCCEEEEEecCCCCCchh---hHHHHHHHHHHHHHhCCEEEEeecccccccC--CCCCceEEEccCCCCHHH
Q 011567 389 GLSIASNPESPIVFLILEKSTGSMKN---DLQLLEDIADWALKEDGVFVVTSKRSMLDKC--RLPVGIRLFVSAAHSEAD 463 (483)
Q Consensus 389 ~~~i~~~~~~~i~~l~l~~~~~~~~~---~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~--~~~~~lRi~~~~~~t~ed 463 (483)
|+.+..+..+.++++.+......... +.....+++..+++++||.+.++........ ..+..+||++.. |+++
T Consensus 321 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~e~ 398 (410)
T 3e2y_A 321 GLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIK--KDST 398 (410)
T ss_dssp TCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCC--CHHH
T ss_pred CCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcC--CHHH
Confidence 88877666777888877532110000 0011235666667777999988654321100 002349999764 9999
Q ss_pred HHHHHHHHHH
Q 011567 464 LVKACESLKR 473 (483)
Q Consensus 464 i~~~~~~l~~ 473 (483)
|++++++|++
T Consensus 399 l~~~l~~l~~ 408 (410)
T 3e2y_A 399 LDAAEEIFRA 408 (410)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 102
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.96 E-value=1.3e-27 Score=239.10 Aligned_cols=327 Identities=13% Similarity=0.080 Sum_probs=232.8
Q ss_pred ECCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHH
Q 011567 106 ISGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTM 182 (483)
Q Consensus 106 ~~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~ 182 (483)
.+|+++|||+++ +.+| .+|.+.+++.+++++. . .|+. ....++++++++++|.+ +.++.++|++++
T Consensus 21 ~~~~~~idl~~~~~~~~--~~~~v~~a~~~~~~~~-~-------~y~~-~~~~~l~~~la~~~~~~~~~v~~~~g~~~al 89 (364)
T 1lc5_A 21 ISPDQLLDFSANINPLG--MPVSVKRALIDNLDCI-E-------RYPD-ADYFHLHQALARHHQVPASWILAGNGETESI 89 (364)
T ss_dssp SCGGGSEECSSCCCTTC--CCHHHHHHHHHTGGGG-G-------SCCC-TTCHHHHHHHHHHHTSCGGGEEEESSHHHHH
T ss_pred CCccceEEeccccCCCC--CCHHHHHHHHHHHHHh-h-------cCCC-CCHHHHHHHHHHHHCcCHHHEEECCCHHHHH
Confidence 467889999987 3344 5799999999887652 1 1221 12578999999999964 455567778999
Q ss_pred HhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCC---HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567 183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHND---MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG 259 (483)
Q Consensus 183 ~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d---~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G 259 (483)
..+++++ ++|.|++..+.|.++...++..|.+++.++.++ ++.++++++.... ++++|++..+++++|
T Consensus 90 ~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~-------~~~~v~i~~p~nptG 160 (364)
T 1lc5_A 90 FTVASGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEALTP-------DLDCLFLCTPNNPTG 160 (364)
T ss_dssp HHHHHHH--CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCCT-------TCCEEEEESSCTTTC
T ss_pred HHHHHHc--CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccchhHHHHHhccC-------CCCEEEEeCCCCCCC
Confidence 9999988 668888888888888888888899998887652 2113444444322 245566666688899
Q ss_pred CccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceee-ccHHHH
Q 011567 260 QIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCT-GSARVV 332 (483)
Q Consensus 260 ~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~-~~~~~~ 332 (483)
.+.| +++|+++|++||+++|+||+|+.+..+ +....+..+. .+.|++++|++|++|..| ||++ ++++++
T Consensus 161 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~ 236 (364)
T 1lc5_A 161 LLPERPLLQAIADRCKSLNINLILDEAFIDFIPH--ETGFIPALKD--NPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAM 236 (364)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTT--CCCSGGGCTT--CTTEEEEEESTTTTTCTTTCCEEEECCCHHHH
T ss_pred CCCCHHHHHHHHHHhhhcCcEEEEECcChhhccC--ccchhhHhcc--CCCEEEEEECchhhcCCccceEEEEECCHHHH
Confidence 9999 899999999999999999999876543 3333333332 334888999999998555 9998 999999
Q ss_pred HHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCc
Q 011567 333 DHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSM 412 (483)
Q Consensus 333 ~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~ 412 (483)
+.++..... .+.+++.++++.++++..+..++.+++++++.+++.+.|++++++.+.. +.++++++.++..
T Consensus 237 ~~l~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~g~~~~~~~~~~---- 307 (364)
T 1lc5_A 237 ARMRRQQMP----WSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVYP-GRANYLLLRCERE---- 307 (364)
T ss_dssp HHHHHHSCT----TCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEECC-CSSSEEEEEESCT----
T ss_pred HHHHHhCCC----CCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEECC-CCCeEEEEECCCc----
Confidence 888765432 2457787777777775422224567778888999999998877887763 5678888877431
Q ss_pred hhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 413 KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 413 ~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
..++.+.++ ++||.+.+...... ..+..+|+++. +++|+++++++|+++++++
T Consensus 308 ------~~~l~~~l~-~~gi~v~~g~~~~~---~~~~~iRis~~---~~~~~~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 308 ------DIDLQRRLL-TQRILIRSCANYPG---LDSRYYRVAIR---SAAQNERLLAALRNVLTGI 360 (364)
T ss_dssp ------TCCHHHHHH-TTTEECEECTTSTT---CCTTEEEEECC---CHHHHHHHHHHHHHHC---
T ss_pred ------HHHHHHHHH-HCCcEEeeCcccCC---CCCCEEEEEeC---CHHHHHHHHHHHHHHhhcc
Confidence 113566555 46999988653211 01245999974 6899999999999887654
No 103
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.3e-28 Score=250.42 Aligned_cols=348 Identities=15% Similarity=0.189 Sum_probs=238.0
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----CCEEEecccHHHH
Q 011567 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PDSILYSYGLSTM 182 (483)
Q Consensus 107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e~~i~~~sG~~a~ 182 (483)
.|+++|||+.+.+ .+..++.+.+++.+++++.+....++ ..|..++...+++.+.+++|. ++.+++++|++|+
T Consensus 55 ~~~~~i~l~~g~~-~~~~~~~v~~a~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 55 QGRELINLGQGFF-SYSPPQFAIKEAQKALDIPMVNQYSP--TRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TTSCCEECCCCSC-SSCCCHHHHHHHHHHTTSGGGGSCCC--TTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred cCCCeEEccCCCC-CCCCCHHHHHHHHHHHhCcCCCCCCC--CCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 4668999998743 44467999999999987632211111 223344444444444444453 3566667889999
Q ss_pred HhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-----------------CCHHHHHHHHHHhhhhhhhccCc
Q 011567 183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-----------------NDMDSLRNTLERVTADNKRAKKL 245 (483)
Q Consensus 183 ~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-----------------~d~~~Le~~l~~~~~~~~~~~~~ 245 (483)
..++++++++||.|++..++|.++...+...|.+++.++. .|+++|++.++ . +
T Consensus 132 ~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~-------~ 201 (447)
T 3b46_A 132 LSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT---S-------K 201 (447)
T ss_dssp HHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC---T-------T
T ss_pred HHHHHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhc---c-------C
Confidence 9999999999999999999998988888888988876652 35666665553 1 2
Q ss_pred cEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC
Q 011567 246 RRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG 322 (483)
Q Consensus 246 ~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G 322 (483)
+++|+++++++++|.+.+ +++|+++|++||+++|+||+|+.+.++.....+... .....+.|++++|+||++|..|
T Consensus 202 ~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~~~~~~~i~i~S~sK~~~~~G 280 (447)
T 3b46_A 202 TKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATL-SPEIGQLTLTVGSAGKSFAATG 280 (447)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGS-CHHHHTTEEEEEEHHHHTTCTT
T ss_pred CeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHc-CCCCCCcEEEEecCchhcCCcc
Confidence 677888888899999875 899999999999999999999976554211122111 0001245899999999998666
Q ss_pred ---ceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh--c-CcHHHHHHHHHHHHHHHhhccCCCceeecC
Q 011567 323 ---GFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE--E-NPDLITKLKKNTAILRTGLSDIHGLSIASN 395 (483)
Q Consensus 323 ---G~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~--~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~ 395 (483)
||+++ ++++++.++.......|+ .++..++++.++|+... + .++++++++++.+++.+.|+++ |+++..+
T Consensus 281 ~riG~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 357 (447)
T 3b46_A 281 WRIGWVLSLNAELLSYAAKAHTRICFA--SPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL-GLPYTAP 357 (447)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTSS--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-TCCEECC
T ss_pred hhhEEEEeCCHHHHHHHHHHHhhccCC--CChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCC
Confidence 99999 999988876543233333 36666777777887652 2 2457888899999999999887 8877655
Q ss_pred CCCCEEEEEecCCCCCch-------hhHHHHHHHHHHHHHhCCEEEEeecccccccC--CCCCceEEEccCCCCHHHHHH
Q 011567 396 PESPIVFLILEKSTGSMK-------NDLQLLEDIADWALKEDGVFVVTSKRSMLDKC--RLPVGIRLFVSAAHSEADLVK 466 (483)
Q Consensus 396 ~~~~i~~l~l~~~~~~~~-------~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~--~~~~~lRi~~~~~~t~edi~~ 466 (483)
..+.++++.+........ .+.....++++++++++||.+.+......... ..+..+||+++ .++++|++
T Consensus 358 ~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~--~~~e~l~~ 435 (447)
T 3b46_A 358 EGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVC--KDDAYLEN 435 (447)
T ss_dssp SBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECC--SCHHHHHH
T ss_pred CeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEe--CCHHHHHH
Confidence 567788888753200000 00012346777777667999987643211100 00245999997 48999999
Q ss_pred HHHHHHH
Q 011567 467 ACESLKR 473 (483)
Q Consensus 467 ~~~~l~~ 473 (483)
++++|++
T Consensus 436 ~~~~l~~ 442 (447)
T 3b46_A 436 AVERLKL 442 (447)
T ss_dssp HHHHGGG
T ss_pred HHHHHHH
Confidence 9999976
No 104
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.96 E-value=5.4e-27 Score=235.07 Aligned_cols=317 Identities=15% Similarity=0.130 Sum_probs=232.8
Q ss_pred EEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh------hCC-CC-EEEecccHHHHH
Q 011567 112 VNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF------LGT-PD-SILYSYGLSTMF 183 (483)
Q Consensus 112 id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~------~g~-e~-~i~~~sG~~a~~ 183 (483)
|||+++.+ .+..+|++.+++.+++++.+... ..|+.... .++++.++++ ++. ++ .++.++|++++.
T Consensus 33 idl~~~~~-~~~~~~~v~~a~~~~~~~~~~~~----~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~ 106 (369)
T 3cq5_A 33 IRLNTNEN-PYPPSEALVADLVATVDKIATEL----NRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQ 106 (369)
T ss_dssp EECSSCCC-CSCCCHHHHHHHHHHHHHHGGGT----TSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred eeccCCCC-CCCCCHHHHHHHHHHHHhccccc----ccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHH
Confidence 89999854 34467999999999998742111 12222222 4777888877 342 34 444466678899
Q ss_pred hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567 184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS 258 (483)
Q Consensus 184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~ 258 (483)
.++++++++||.|+++.+.|.++...+...|.+++.++++ |+++|++.+++. ++++|+++++++++
T Consensus 107 ~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~---------~~~~v~~~~~~npt 177 (369)
T 3cq5_A 107 QLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRAK---------QPDIVFVTTPNNPT 177 (369)
T ss_dssp HHHHHHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHH---------CCSEEEEESSCTTT
T ss_pred HHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhcc---------CCCEEEEeCCCCCC
Confidence 9999999999999999999999988899899998888754 677888777542 15677789999999
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCc-eeEEEccccccccCCC---ceeeccHHHHHH
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDK-IDIVTAAMGHALATEG---GFCTGSARVVDH 334 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~-~Di~~~s~~K~lg~~G---G~i~~~~~~~~~ 334 (483)
|.+.|++++.++|+.+++++|+||+|+.+..+ .......+. .+ .+++++|++|++|..| ||+++++++++.
T Consensus 178 G~~~~~~~l~~l~~~~~~~li~De~~~~~~~~---~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~ 252 (369)
T 3cq5_A 178 GDVTSLDDVERIINVAPGIVIVDEAYAEFSPS---PSATTLLEK--YPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDA 252 (369)
T ss_dssp CCCCCHHHHHHHHHHCSSEEEEECTTGGGCCS---CCGGGGTTT--CTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHH
T ss_pred CCCCCHHHHHHHHHhCCCEEEEECCchhhcCC---cchHHHHhh--CCCCEEEEEechHhcCCcccceEEEEeCHHHHHH
Confidence 99999999999999999999999999876532 111122121 12 4788899999998666 999999999888
Q ss_pred HHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchh
Q 011567 335 QRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKN 414 (483)
Q Consensus 335 ~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~ 414 (483)
++.....+ +.+++.++++.++++..+..++.+++++++.+++.+.|++. |+.+. ++.++++++.++.
T Consensus 253 l~~~~~~~----~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~------- 319 (369)
T 3cq5_A 253 VMLVRLPY----HLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL-GYAVV-PSESNFVFFGDFS------- 319 (369)
T ss_dssp HHTTSCTT----CSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH-TCEEE-CCSSSEEEEECCS-------
T ss_pred HHHcCCCC----CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEC-CCCCeEEEEECCC-------
Confidence 87654432 35788888888888753322347788889999999999874 78776 4567888887631
Q ss_pred hHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567 415 DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 476 (483)
Q Consensus 415 ~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~ 476 (483)
+ ..++.+.+ .++||.+.+... +..+|++++ |++|+++++++|++++.
T Consensus 320 ~---~~~l~~~l-~~~gi~v~~~~~--------~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 320 D---QHAAWQAF-LDRGVLIRDVGI--------AGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp S---HHHHHHHH-HHTTEECBCCSC--------TTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred C---HHHHHHHH-HHCCEEEEECCC--------CCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 1 23466655 456999987521 245999986 89999999999988753
No 105
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.96 E-value=1.7e-27 Score=240.50 Aligned_cols=323 Identities=15% Similarity=0.147 Sum_probs=236.0
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-C--EEEecccHHHHHhh
Q 011567 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-D--SILYSYGLSTMFSA 185 (483)
Q Consensus 109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~--~i~~~sG~~a~~~a 185 (483)
+.|+|..+. +. .+|.+.+++.+++.. + .+ ....+...++++.+++++|.+ + .+++++|++|+..+
T Consensus 34 ~~~l~~~~~---~~-~~~~v~~a~~~~~~~---~-~~----~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~ 101 (393)
T 1vjo_A 34 SRLLLGPGP---SN-AHPSVLQAMNVSPVG---H-LD----PAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEAT 101 (393)
T ss_dssp CCEECSSSC---CC-CCHHHHHHHSSCCCC---T-TS----HHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHH
T ss_pred cceeccCCC---CC-CCHHHHHHHhccccc---c-cC----HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHH
Confidence 456665442 22 568888877665542 0 00 113467889999999999975 3 55568889999999
Q ss_pred hhhhccCCcEEEEcCCchhH--HHhHhhhcCCeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567 186 IPCFCKKGDLIVADEGVHWG--IQNGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS 258 (483)
Q Consensus 186 i~~~~~~gdiI~~~~~~h~s--~~~g~~~s~~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~ 258 (483)
++++.++||.|++..+.|.+ +...++..|.+++.++. .|+++|++.+++. + +++|+++++++++
T Consensus 102 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~--~-------~~~v~~~~~~npt 172 (393)
T 1vjo_A 102 IANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETH--R-------PAILALVHAETST 172 (393)
T ss_dssp HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH--C-------CSEEEEESEETTT
T ss_pred HHhccCCCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhC--C-------ceEEEEeccCCCc
Confidence 99999999999998888888 77888888988888873 5788998888652 1 5688889999999
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC--ceeeccHHHHHHHH
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG--GFCTGSARVVDHQR 336 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G--G~i~~~~~~~~~~~ 336 (483)
|.+.|+++|+++|++||+++|+||+|++|... ..+...++|++++|++|++++.| |++++++++++.++
T Consensus 173 G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~---------~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~ 243 (393)
T 1vjo_A 173 GARQPLEGVGELCREFGTLLLVDTVTSLGGVP---------IFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQ 243 (393)
T ss_dssp TEECCCTTHHHHHHHHTCEEEEECTTTTTTSC---------CCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHH
T ss_pred ceeccHHHHHHHHHHcCCEEEEECCccccCcC---------CcccccCccEEEEcCcccccCCCceEEEEECHHHHHHHh
Confidence 99999999999999999999999999965321 12222345999999999997544 89999999888774
Q ss_pred hc---CCce--------------eecC-CCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecCC
Q 011567 337 LS---SSGY--------------VFSA-SLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNP 396 (483)
Q Consensus 337 ~~---~~~~--------------~fs~-~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~ 396 (483)
.. ..++ .+.. +.++..++++.++++.+.+ .++++++++++.+++.+.|+++ |+++..+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 322 (393)
T 1vjo_A 244 RRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEK 322 (393)
T ss_dssp TCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCG
T ss_pred ccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-CCcccCCc
Confidence 32 1111 2222 5678888888888987643 2468889999999999999987 88776442
Q ss_pred C---CCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc-cCCCCHHHHHHHHHHHH
Q 011567 397 E---SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLK 472 (483)
Q Consensus 397 ~---~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~-~~~~t~edi~~~~~~l~ 472 (483)
. ..++.+.++... + ..++++.++++.||.+.++..+.. +..+|+++ +...+++++++++++|+
T Consensus 323 ~~~~~~~~~~~~~~~~-----~---~~~~~~~l~~~~gi~v~~g~~~~~-----~~~iRis~~~~~~~~~~i~~~~~~l~ 389 (393)
T 1vjo_A 323 EYRLPTLTTVCIPDGV-----D---GKAVARRLLNEHNIEVGGGLGELA-----GKVWRVGLMGFNSRKESVDQLIPALE 389 (393)
T ss_dssp GGBCSSEEEEECCTTC-----C---HHHHHHHHHHHHCEECEECCGGGT-----TTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred cccCCcEEEEEcCCCC-----C---HHHHHHHHHhhCCEEEecCccccC-----CCEEEEeCCccCChHHHHHHHHHHHH
Confidence 2 357777763211 1 235677655544999987654321 34599995 45667888999999999
Q ss_pred HHH
Q 011567 473 RIS 475 (483)
Q Consensus 473 ~~~ 475 (483)
+++
T Consensus 390 ~~l 392 (393)
T 1vjo_A 390 QVL 392 (393)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 106
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.96 E-value=3.8e-27 Score=234.28 Aligned_cols=330 Identities=14% Similarity=0.114 Sum_probs=232.6
Q ss_pred cCCCCeEE-ECCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEE
Q 011567 98 SAAGPHTI-ISGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSI 173 (483)
Q Consensus 98 ~~~g~~~~-~~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i 173 (483)
.+.|.+++ .+|+++|||+++ ++++ .+|++.+++.+++..+. .|+... ..++++++|+++|.+ +.+
T Consensus 3 ~~~g~~~~~~~g~~~id~~~~~~~~~--~~~~v~~a~~~~~~~~~--------~y~~~~-~~~lr~~la~~~~~~~~~i~ 71 (350)
T 3fkd_A 3 FGHGDEGITPLSSEIVNFSTTVWTDG--DKDHLEKHLVENLNCIR--------HYPEPD-AGTLRQMLAKRNSVDNNAIL 71 (350)
T ss_dssp -------------CCEECSCCSCCCS--CCHHHHHHHHHTGGGGG--------SCCCTT-CHHHHHHHHHHTTCCGGGEE
T ss_pred ccccchHhhhccccEEEccCCCCCCC--CCHHHHHHHHHhHhHHh--------cCCCCc-HHHHHHHHHHHhCcCHHHEE
Confidence 45677777 799999999998 5555 57999999988874421 122222 268999999999964 566
Q ss_pred EecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-CCHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567 174 LYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-NDMDSLRNTLERVTADNKRAKKLRRYIVVE 252 (483)
Q Consensus 174 ~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e 252 (483)
++++|++++..+++++. ||.|+++.+.|.++...++..|.+++.++. ++.+.+.. . ++++|+++
T Consensus 72 ~t~g~~~al~~~~~~l~--gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~------~-------~~~~v~i~ 136 (350)
T 3fkd_A 72 VTNGPTAAFYQIAQAFR--GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEADF------S-------NMDFCWLC 136 (350)
T ss_dssp EESHHHHHHHHHHHHTT--TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGGSCC------T-------TCSEEEEE
T ss_pred EcCCHHHHHHHHHHHHC--CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCccccCcc------C-------CCCEEEEe
Confidence 66888899999999888 899999999999999999999999999987 54333321 1 25677778
Q ss_pred cccCCCCCccChHHHHHHHHHcC-cEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeecc
Q 011567 253 AVYQNSGQIAPLDELIRLKEKYR-FRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGS 328 (483)
Q Consensus 253 ~v~~~~G~i~~L~~l~~l~~k~~-~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~ 328 (483)
.+++++|.+.|++++.++++.++ .++|+||+|+.+.. .+.......+ ..+.+++++|++|++|..| ||++++
T Consensus 137 ~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~--~~~~~~~~~~--~~~~~i~~~S~sK~~~~~G~r~G~~~~~ 212 (350)
T 3fkd_A 137 NPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTT--EEVIRPADIK--GRKNLVMVYSFSHAYGIPGLRIGYIVAN 212 (350)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCS--SCCCCGGGGT--TCSSEEEEEESHHHHSCGGGCCEEEECC
T ss_pred CCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhcc--CcchhhHHhh--cCCCEEEEecCchhccCcchheEeEEeC
Confidence 88999999999999999999886 79999999986433 2332222222 2344788999999998555 999999
Q ss_pred HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCC
Q 011567 329 ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS 408 (483)
Q Consensus 329 ~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~ 408 (483)
+++++.++..... .+.+++.++++.++++......+..++..++.+++.+.|++++++.+.+ +.++++++.++..
T Consensus 213 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~ 287 (350)
T 3fkd_A 213 KDFMKRVAAFSTP----WAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEVHP-SGTTFFLLRLKKG 287 (350)
T ss_dssp HHHHHHHHTTCCT----TCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEECC-CSSSEEEEEESSS
T ss_pred HHHHHHHHHhCCC----CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEECC-CCCcEEEEECCCC
Confidence 9999988765433 2457888888888887544222233444488899999998888888763 4677888887532
Q ss_pred CCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 409 ~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
...++++.+++++||.+.++..+.. ..+..+||+++ +++|+++++++|+++.++
T Consensus 288 ---------~~~~l~~~L~~~~gi~v~~g~~f~~---~~~~~iRis~~---~~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 288 ---------TAAELKKYMLEEYNMLIRDASNFRG---LDESYVRITTQ---RPAQNQLFIKALETFLEK 341 (350)
T ss_dssp ---------CHHHHHHHHHHTTCEECEECTTSTT---CCTTEEEEECC---CHHHHHHHHHHHHHHHTC
T ss_pred ---------CHHHHHHHHHHHCCEEEEeCccCCC---CCCCEEEEEcC---CHHHHHHHHHHHHHHHHH
Confidence 1335677666547999998754321 01245999985 889999999998887643
No 107
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.96 E-value=1.9e-27 Score=238.89 Aligned_cols=335 Identities=15% Similarity=0.117 Sum_probs=234.0
Q ss_pred EEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcc--cChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhh
Q 011567 111 VVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFY--GTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAI 186 (483)
Q Consensus 111 ~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~--g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai 186 (483)
|+|++++ +. .+|.+.+++.+++.+...+. .....+ +..+...++++++++++|.+ +.+++++|++|+..++
T Consensus 3 yld~~~~---~~-~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~ 77 (382)
T 4eb5_A 3 YFDYTSA---KP-VDERILEAMLPYMTESFGNP-SSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAI 77 (382)
T ss_dssp BCBTTTC---CC-CCHHHHHHHHHHHHTSCCCT-TCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHH
T ss_pred eeccCCC---CC-CCHHHHHHHHHHHHhccCCC-CCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHH
Confidence 6777665 33 68999999999998632111 111111 23467899999999999976 4556688899999999
Q ss_pred hhhc----cCCcEEEEcCCchhHHHhHhhh---cCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecc
Q 011567 187 PCFC----KKGDLIVADEGVHWGIQNGLYL---SRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAV 254 (483)
Q Consensus 187 ~~~~----~~gdiI~~~~~~h~s~~~g~~~---s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v 254 (483)
.++. ++||.|+++.+.|.++...+.. .|.+++.++.+ |+++|++.+++ ++++|+++++
T Consensus 78 ~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----------~~~~v~~~~~ 147 (382)
T 4eb5_A 78 IGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD----------DTILVSVQHA 147 (382)
T ss_dssp HHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT----------TEEEEECCSB
T ss_pred HHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC----------CCeEEEEecc
Confidence 9987 8999999999999888776653 57888888763 67777766632 2678999999
Q ss_pred cCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHH-H
Q 011567 255 YQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARV-V 332 (483)
Q Consensus 255 ~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~-~ 332 (483)
++++|.+.|+++|.++|++||++ |+||+|++|... . ++...++|++++|++|.+|+.| |+++.+++. +
T Consensus 148 ~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~---~------~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~~l 217 (382)
T 4eb5_A 148 NNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIE---V------DVEKIGADMLTISSNDIYGPKGVGALWIRKEAKL 217 (382)
T ss_dssp CTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBC---C------CHHHHTCSEEEEETGGGTCCSSCEEEEEETTCCC
T ss_pred CCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcc---c------CccccCCCEEEeehHHhcCCCceEEEEEcccccc
Confidence 99999999999999999999999 999999865321 1 1110134899999999988755 787776653 1
Q ss_pred HHHHhcC-C-ceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecCC---CCCEEEEEec
Q 011567 333 DHQRLSS-S-GYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASNP---ESPIVFLILE 406 (483)
Q Consensus 333 ~~~~~~~-~-~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~---~~~i~~l~l~ 406 (483)
....... . ......+.++..++++.++++.+++ .++++++++++.+++.+.|++++++.+..+. .+.++.+.++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (382)
T 4eb5_A 218 QPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFS 297 (382)
T ss_dssp CCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEET
T ss_pred CceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeC
Confidence 1110000 0 0011224466666666677776653 2467888899999999999988788776442 1557777774
Q ss_pred CCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccccc---------CC-----CCCceEEEccCCCCHHHHHHHHHHHH
Q 011567 407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK---------CR-----LPVGIRLFVSAAHSEADLVKACESLK 472 (483)
Q Consensus 407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~---------~~-----~~~~lRi~~~~~~t~edi~~~~~~l~ 472 (483)
.. + ..++.+.+. ++||.+.++..+.... .. .+..+|++++..+|++|+++++++|+
T Consensus 298 ~~------~---~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 367 (382)
T 4eb5_A 298 YI------E---GESIVLSLD-MAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLP 367 (382)
T ss_dssp TS------C---HHHHHHHHH-HHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred Cc------C---HHHHHHHHH-HCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 21 1 224666554 4599998764321100 00 02459999998899999999999999
Q ss_pred HHHHHHHh
Q 011567 473 RISAVVLR 480 (483)
Q Consensus 473 ~~~~~~~~ 480 (483)
++++++.+
T Consensus 368 ~~~~~~~~ 375 (382)
T 4eb5_A 368 GVIERLRS 375 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887643
No 108
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.96 E-value=2.1e-27 Score=240.23 Aligned_cols=334 Identities=14% Similarity=0.151 Sum_probs=232.4
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCC-CCCCCCcccChHHHHHHHHHHHhhhC----CCCEEEecccHHH
Q 011567 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVG-SCGPRGFYGTIDVHLDCEARIAKFLG----TPDSILYSYGLST 181 (483)
Q Consensus 107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g-~~~~~~~~g~~~~~~~l~~~La~~~g----~e~~i~~~sG~~a 181 (483)
+|+++|||++++. .+..+|.+.+++.+++++.+.. ..+.....|..++...+++.+.+.+| .++.+++++|+++
T Consensus 33 ~~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~a 111 (398)
T 3ele_A 33 GKENVYDFSIGNP-SIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAAS 111 (398)
T ss_dssp CGGGCEECCSCCC-CSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred CCCCeEEeecCCC-CCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHH
Confidence 3568999999844 3337899999999998873210 00111123444556666666666555 2356666788999
Q ss_pred HHhhhhhhccCC-cEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecc
Q 011567 182 MFSAIPCFCKKG-DLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAV 254 (483)
Q Consensus 182 ~~~ai~~~~~~g-diI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v 254 (483)
+..++++++++| |.|+++.+.|.++...++..|.+++.++.+ |+++|++.+++ .+++|+++.+
T Consensus 112 l~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~----------~~~~v~~~~p 181 (398)
T 3ele_A 112 LSICFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERINA----------HTRGVIINSP 181 (398)
T ss_dssp HHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCT----------TEEEEEECSS
T ss_pred HHHHHHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCc----------CCCEEEEcCC
Confidence 999999999999 999999999999999999999999988865 67777766532 2677777788
Q ss_pred cCCCCCccC---hHHHHHHHHH------cCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---
Q 011567 255 YQNSGQIAP---LDELIRLKEK------YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG--- 322 (483)
Q Consensus 255 ~~~~G~i~~---L~~l~~l~~k------~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G--- 322 (483)
++++|.+.| +++|+++|++ ||+++|+||+|+.+.++ |.......+. .+.+++++|+||++|..|
T Consensus 182 ~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~r~ 257 (398)
T 3ele_A 182 NNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYD--GIKVPFVTKY--YDNTLVCYSYSKSLSLPGERI 257 (398)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCT--TCCCCCGGGT--CSSEEEEEESTTTSSCTTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccC--CCCcCChHhh--cCCeEEEEehhhcCCCcccee
Confidence 899999999 7888899999 99999999999876553 2222211222 234788999999998666
Q ss_pred ceeeccHHHHH------HHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCC
Q 011567 323 GFCTGSARVVD------HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP 396 (483)
Q Consensus 323 G~i~~~~~~~~------~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~ 396 (483)
||+++++++++ .+....... ...+.++...+++.+.++ .. ..+++++++.+++.+.|+++ ++.+..+.
T Consensus 258 G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~---~~-~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 331 (398)
T 3ele_A 258 GYVLVPDEVYDKAELYAAVCGAGRAL-GYVCAPSLFQKMIVKCQG---AT-GDINAYKENRDLLYEGLTRI-GYHCFKPD 331 (398)
T ss_dssp EEEECCTTSTTHHHHHHHHHHHHHHT-TCCCSCHHHHHHHTTCTT---CC-CCHHHHHHHHHHHHHHHHHH-TCCEECCS
T ss_pred EEEEEcchhhhHHHHHHHHHHHhhhc-cccCCCHHHHHHHHHHhc---CH-HHHHHHHHHHHHHHHHHHHc-CCeecCCC
Confidence 99988876432 222111110 011335555555444332 22 25778889999999999886 77777555
Q ss_pred CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567 397 ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 476 (483)
Q Consensus 397 ~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~ 476 (483)
.+.++++.++.. + ..++++. |.++||.+.++..+.. +..+||+++ +|+++|++++++|+++++
T Consensus 332 ~~~~~~~~~~~~------~---~~~~~~~-l~~~gi~v~~g~~~~~-----~~~iRis~~--~~~e~i~~~l~~l~~~l~ 394 (398)
T 3ele_A 332 GAFYMFVKALED------D---SNAFCEK-AKEEDVLIVAADGFGC-----PGWVRISYC--VDREMIKHSMPAFEKIYK 394 (398)
T ss_dssp BSSEEEEECSSS------C---HHHHHHH-HHTTTEECEESGGGTC-----TTEEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEEcCCC------C---HHHHHHH-HHHCCEEEeCccccCC-----CCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 555577776421 1 2356664 4567999988754432 345999985 799999999999999987
Q ss_pred HH
Q 011567 477 VV 478 (483)
Q Consensus 477 ~~ 478 (483)
++
T Consensus 395 ~~ 396 (398)
T 3ele_A 395 KY 396 (398)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 109
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.96 E-value=9.3e-27 Score=234.74 Aligned_cols=333 Identities=19% Similarity=0.193 Sum_probs=230.9
Q ss_pred CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC----CCEEEecccHHHHH
Q 011567 108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT----PDSILYSYGLSTMF 183 (483)
Q Consensus 108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~----e~~i~~~sG~~a~~ 183 (483)
|+.++||+.+++ .+..++.+.+++.+.++....++ ....|..++...+++.+.+..|. ++.+++++|++++.
T Consensus 30 ~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~y---~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~ 105 (385)
T 1b5p_A 30 GVDLVALTAGEP-DFDTPEHVKEAARRALAQGKTKY---APPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF 105 (385)
T ss_dssp TCCCEECCCSSC-SSCCCHHHHHHHHHHHHTTCCSC---CCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred CCCEEEecCCCC-CCCCCHHHHHHHHHHHhcCCCCC---CCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHH
Confidence 456899998854 33346889999998887521111 11223344444444444444452 35666688889999
Q ss_pred hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccC
Q 011567 184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ 256 (483)
Q Consensus 184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~ 256 (483)
.+++++.++||.|+++.+.|..+...++..|.+++.++.+ |+++|++.+++ ++++|++..++|
T Consensus 106 ~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~----------~~~~v~~~~p~N 175 (385)
T 1b5p_A 106 NLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP----------RTKALVVNSPNN 175 (385)
T ss_dssp HHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT----------TEEEEEEESSCT
T ss_pred HHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCC----------CCEEEEEeCCCC
Confidence 9999999999999999999999988888899998888753 45566554422 256667767788
Q ss_pred CCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHH
Q 011567 257 NSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSAR 330 (483)
Q Consensus 257 ~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~ 330 (483)
++|.+.| +++|+++|++||+++|+||+|+.+.++. .......+.+ +.+++++|+||++|..| ||++++++
T Consensus 176 PtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~---~~~~~~~~~~-~~~i~~~s~SK~~~~~G~RiG~~~~~~~ 251 (385)
T 1b5p_A 176 PTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG---EHFSPGRVAP-EHTLTVNGAAKAFAMTGWRIGYACGPKE 251 (385)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS---CCCCGGGTCT-TTEEEEEESTTTTTCGGGCCEEEECCHH
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC---CCCCHHHcCC-CCEEEEEechhhcCCcccceEEEEeCHH
Confidence 9999987 8999999999999999999998765532 1112223333 55899999999998655 99999999
Q ss_pred HHHHHHhcCCceeecCCCcHHHHHHHHHHHHH----HhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEec
Q 011567 331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDV----LEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILE 406 (483)
Q Consensus 331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~----l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~ 406 (483)
+++.++.....+. .+.++....++.++++. .+..++.+++++++.+++.+.|+++ |+.+..+..+.++++.+.
T Consensus 252 ~~~~l~~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~ 328 (385)
T 1b5p_A 252 VIKAMASVSRQST--TSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTS 328 (385)
T ss_dssp HHHHHHHHHHTTT--CSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSBTTEEEEECT
T ss_pred HHHHHHHHHhhcc--CCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecC
Confidence 8887754322222 23456666666667753 2222457788888899999999887 877765545566676664
Q ss_pred CCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567 407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 476 (483)
Q Consensus 407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~ 476 (483)
.. +. + ..++++.++ ++||.+.++..... +..+||++. +++++++++++.|+++++
T Consensus 329 ~~-~~---~---~~~l~~~l~-~~gv~v~~g~~f~~-----~~~iRis~~--~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 329 PI-AP---D---EVRAAERLL-EAGVAVVPGTDFAA-----FGHVRLSYA--TSEENLRKALERFARVLG 383 (385)
T ss_dssp TT-CS---S---HHHHHHHHH-HTTEECEESGGGTC-----TTEEEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred CC-CC---C---HHHHHHHHH-HCCeEEecccccCC-----CCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 21 10 1 235677666 56999988654321 345999986 799999999999987754
No 110
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.96 E-value=2e-27 Score=240.91 Aligned_cols=338 Identities=16% Similarity=0.176 Sum_probs=237.1
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHH-hcCCCCCCCCCcccChHHHHH----HHHHHHhhhCCCCEEE-ecccHHHH
Q 011567 109 KEVVNFASANYLGLIGHEKLLESCTSALE-KYGVGSCGPRGFYGTIDVHLD----CEARIAKFLGTPDSIL-YSYGLSTM 182 (483)
Q Consensus 109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~-~~g~g~~~~~~~~g~~~~~~~----l~~~La~~~g~e~~i~-~~sG~~a~ 182 (483)
+.++|+++++++ +|++.+++.+++. .++.+.++++.+.|.. ...+ +++++++++|.+...+ +++|++|+
T Consensus 24 ~~~~~~~~~~~~----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~ 98 (405)
T 2vi8_A 24 AKIELIASENFV----SRAVMEAQGSVLTNKYAEGYPGRRYYGGCE-YVDIVEELARERAKQLFGAEHANVQPHSGAQAN 98 (405)
T ss_dssp HSEECCTTCCCC----CHHHHHHHTSGGGGCCCCEETTEESSSCCH-HHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHH
T ss_pred cceeeccCcccC----CHHHHHHHHHHhhcccccCCCCccccccch-HHHHHHHHHHHHHHHHhCCCceEEEecCcHHHH
Confidence 357888887776 7999999999986 5555544444333332 2344 4479999999887655 58999999
Q ss_pred HhhhhhhccCCcEEEEcCCchhHHHh-H--hhhcCC--eEEEecC------CCHHHHHHHHHHhhhhhhhccCccEEEEE
Q 011567 183 FSAIPCFCKKGDLIVADEGVHWGIQN-G--LYLSRS--TVVYFKH------NDMDSLRNTLERVTADNKRAKKLRRYIVV 251 (483)
Q Consensus 183 ~~ai~~~~~~gdiI~~~~~~h~s~~~-g--~~~s~~--~v~~~~~------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~ 251 (483)
..+++++.++||.|++..++|.++.. + +...|. +++.++. .|+++|++.+++.. +++|++
T Consensus 99 ~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~---------~~~v~~ 169 (405)
T 2vi8_A 99 MAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHR---------PKLIVA 169 (405)
T ss_dssp HHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHC---------CSEEEE
T ss_pred HHHHHHhcCCCCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHhcC---------CeEEEE
Confidence 99999999999999999999987653 2 123333 5666653 37888888876421 345666
Q ss_pred ecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeeccHH
Q 011567 252 EAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSAR 330 (483)
Q Consensus 252 e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~~~ 330 (483)
.+. +.|...++++|+++|++||+++|+||+|++|..+. +... .++ ..+|++++|++|+++ +.|||++++++
T Consensus 170 ~~~--~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~---~~~~-~~~--~~~di~~~s~sK~~~g~~gG~~~~~~~ 241 (405)
T 2vi8_A 170 AAA--AYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAA---GLHP-NPV--PYAHFVTTTTHKTLRGPRGGMILCQEQ 241 (405)
T ss_dssp CCS--SCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHT---TSSC-CST--TTCSEEEEESSSTTCCCSCEEEEECHH
T ss_pred eCC--CCCccCCHHHHHHHHHHcCCEEEEEcccccccccc---CcCC-Ccc--ccCCEEEEeccccCCCCCCeEEEEcHH
Confidence 432 23666789999999999999999999999776542 2211 222 235899999999997 77899999998
Q ss_pred HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecC-CCCCEEEEEecC
Q 011567 331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASN-PESPIVFLILEK 407 (483)
Q Consensus 331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~-~~~~i~~l~l~~ 407 (483)
+++.++.....+.++ +.++..++++.++++.+.. .+++.++++++.+++.+.|+++ |+++..+ ..++++++.++.
T Consensus 242 ~~~~l~~~~~~~~~~-~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 319 (405)
T 2vi8_A 242 FAKQIDKAIFPGIQG-GPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRP 319 (405)
T ss_dssp HHHHHHHHHTTTTCS-SCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGG
T ss_pred HHHHHHhhhcccccC-CCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCCCceEEEEEccC
Confidence 888776543344333 3456667776778876543 2468889999999999999987 8887653 357888888753
Q ss_pred CCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc-ccCCCCCceEEEccC----CCCHHHHHHHHHHHHHHHHHH
Q 011567 408 STGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML-DKCRLPVGIRLFVSA----AHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 408 ~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~-~~~~~~~~lRi~~~~----~~t~edi~~~~~~l~~~~~~~ 478 (483)
... + ..++.+.+ .++||.+.+...+.- .....+..+|++++. .+|++|+++++++|+++++++
T Consensus 320 ~~~----~---~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 320 QQL----T---GKTAEKVL-DEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV 387 (405)
T ss_dssp GTC----C---HHHHHHHH-HHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred CCC----C---HHHHHHHH-HHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhcc
Confidence 110 1 23455554 456999987643200 000013459999986 689999999999999987654
No 111
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.96 E-value=4.4e-27 Score=239.09 Aligned_cols=317 Identities=13% Similarity=0.110 Sum_probs=229.9
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC--EE-EecccHHHHHhhhhhhccCCcEEEEcCCc
Q 011567 126 EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD--SI-LYSYGLSTMFSAIPCFCKKGDLIVADEGV 202 (483)
Q Consensus 126 p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~--~i-~~~sG~~a~~~ai~~~~~~gdiI~~~~~~ 202 (483)
+.+.+++.+++.+...+... ....+...++++++++++|.+. .+ +.++|++++..++.++.++||.|++..+.
T Consensus 20 ~~~~~~v~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~ 95 (416)
T 3isl_A 20 VEVDPRVLRVMSTPVVGQFD----PAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYG 95 (416)
T ss_dssp CCCCHHHHHHTTSCCCCTTS----HHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESS
T ss_pred cCcCHHHHHHhcccCCCCcc----HHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 34455566666653332111 1224568899999999999764 33 44778899999999999999999988888
Q ss_pred hhH--HHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcC
Q 011567 203 HWG--IQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYR 275 (483)
Q Consensus 203 h~s--~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~ 275 (483)
|.+ +...++..|.+++.++.+ |+++|++.+++. ++++|+++++++++|.+.|+++|.++|++||
T Consensus 96 ~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~---------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~ 166 (416)
T 3isl_A 96 RFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIKKV---------KPKIVAMVHGETSTGRIHPLKAIGEACRTED 166 (416)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH---------CCSEEEEESEETTTTEECCCHHHHHHHHHTT
T ss_pred cccHHHHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhC---------CCcEEEEEccCCCCceecCHHHHHHHHHHcC
Confidence 877 666778889998888765 888998888642 2578889999999999999999999999999
Q ss_pred cEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCC-ceeeccHHHHHHHHhcC--------------
Q 011567 276 FRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEG-GFCTGSARVVDHQRLSS-------------- 339 (483)
Q Consensus 276 ~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~G-G~i~~~~~~~~~~~~~~-------------- 339 (483)
+++|+||+|++|.+. ++....++|++++|++|++ |+.| |+++.++++++.++...
T Consensus 167 ~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~ 237 (416)
T 3isl_A 167 ALFIVDAVATIGGCE---------VKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAA 237 (416)
T ss_dssp CEEEEECTTTTTTSC---------CCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC---------------
T ss_pred CEEEEECCccccCCC---------cchhhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchh
Confidence 999999999876432 1222234599999999985 4444 88889999888775321
Q ss_pred ---------------------Cceee-cCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecC
Q 011567 340 ---------------------SGYVF-SASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASN 395 (483)
Q Consensus 340 ---------------------~~~~f-s~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~ 395 (483)
....+ ..+.+...++++.++++.+.+ .+++.++++++.+++.+.|++. |+++..+
T Consensus 238 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 316 (416)
T 3isl_A 238 LSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-GLRLFGD 316 (416)
T ss_dssp ---CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSC
T ss_pred ccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccC
Confidence 01112 234567777777778877654 2578899999999999999985 8877644
Q ss_pred CC---CCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHH-HHHHHHHH
Q 011567 396 PE---SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEAD-LVKACESL 471 (483)
Q Consensus 396 ~~---~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~ed-i~~~~~~l 471 (483)
.. +.++.+.++... + ..++.+.++++.||.+.++..+. .+..+|++++...|++| +++++++|
T Consensus 317 ~~~~~~~~~~~~~~~~~-----~---~~~l~~~L~~~~gi~v~~g~~~~-----~~~~iRi~~~~~~~~~e~i~~~~~~l 383 (416)
T 3isl_A 317 DSCKMPVVTCVEIPGGI-----D---GESVRDMLLAQFGIEIASSFGPL-----AGKIWRIGTMGYSCRKENVLFVLAGL 383 (416)
T ss_dssp GGGBCTTEEEEECCTTC-----C---HHHHHHHHHHHHCEECBCCCSTT-----TTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred ccccCCcEEEEeCCCCC-----C---HHHHHHHHHHhCCEEEecCCCCC-----CCCEEEEecccCCCcHHHHHHHHHHH
Confidence 32 567778774211 1 23567766555599998654221 12459999977677777 99999999
Q ss_pred HHHHHHH
Q 011567 472 KRISAVV 478 (483)
Q Consensus 472 ~~~~~~~ 478 (483)
+++++++
T Consensus 384 ~~~~~~~ 390 (416)
T 3isl_A 384 EAVLLRH 390 (416)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9998764
No 112
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.93 E-value=6.2e-31 Score=265.94 Aligned_cols=348 Identities=11% Similarity=0.051 Sum_probs=244.6
Q ss_pred ccccCCCCeEE-ECCe--eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----
Q 011567 95 VLESAAGPHTI-ISGK--EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL---- 167 (483)
Q Consensus 95 ~i~~~~g~~~~-~~G~--~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~---- 167 (483)
+..+++|+++| .+|+ +++||.++++ ++..+|.+.+++.+++++... .|+ +...++++.+++++
T Consensus 14 ~~~~~~g~~~~d~~g~~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~-------~y~--~~~~~l~~~la~~l~~~~ 83 (392)
T 3b1d_A 14 PNRLSHHTYKWKETETDPQLLPAWIADM-DFEVMPEVKQAIHDYAEQLVY-------GYT--YASDELLQAVLDWEKSEH 83 (392)
Confidence 34568999999 7898 9999998865 665789999999998865211 122 12556677777654
Q ss_pred C----CCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC--------CHHHHHHHHHHh
Q 011567 168 G----TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN--------DMDSLRNTLERV 235 (483)
Q Consensus 168 g----~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~--------d~~~Le~~l~~~ 235 (483)
| .++.+++++|++++..+++++.++||.|++..+.|.++...+...|.+++.++.+ |+++|++.+++.
T Consensus 84 g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~ 163 (392)
T 3b1d_A 84 QYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVEN 163 (392)
Confidence 4 2345566778899999999999999999999999988888888888887776652 566666666421
Q ss_pred hhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC--CceeEE
Q 011567 236 TADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV--DKIDIV 310 (483)
Q Consensus 236 ~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~--~~~Di~ 310 (483)
++++|+++.+++++|.+.| +++|+++|++||+++|+||+|+.+.++ |.+....+.+.+ .+.+++
T Consensus 164 ---------~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~~i~ 232 (392)
T 3b1d_A 164 ---------DVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLF--GHEHVSFNTVSPDFKDFALV 232 (392)
Confidence 2456777788888999877 899999999999999999999876543 333333333332 345688
Q ss_pred EccccccccCCC---ceeeccH-HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhc
Q 011567 311 TAAMGHALATEG---GFCTGSA-RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLS 385 (483)
Q Consensus 311 ~~s~~K~lg~~G---G~i~~~~-~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~ 385 (483)
++|+||++|..| ||+++++ ++++.++.....+.++ +.+++.++++.++++..++ ..+.++.++++.+.+.+.|+
T Consensus 233 ~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 311 (392)
T 3b1d_A 233 LSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHH-EVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFA 311 (392)
Confidence 899999998556 8888764 5888776654444333 2467777777777764222 24567778888888988888
Q ss_pred c-CCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHH
Q 011567 386 D-IHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADL 464 (483)
Q Consensus 386 ~-~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi 464 (483)
+ ++++.+..+..+.++++.++.. .....++++.+++++||++.+...+.. ..+..+|+++.. +++++
T Consensus 312 ~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~l~~~l~~~~gi~v~~g~~f~~---~~~~~iRi~~~~--~~e~i 379 (392)
T 3b1d_A 312 QEAPRLKVMKPQGTYLIWLDFSDY-------GLTDDALFTLLHDQAKVILNRGSDYGS---EGELHARLNIAA--PKSLV 379 (392)
Confidence 7 6677766443444445666321 011335677665567999987654321 012349998764 68999
Q ss_pred HHHHHHHHHHHH
Q 011567 465 VKACESLKRISA 476 (483)
Q Consensus 465 ~~~~~~l~~~~~ 476 (483)
++++++|+++++
T Consensus 380 ~~~l~~l~~~l~ 391 (392)
T 3b1d_A 380 EEICKRIVCCLP 391 (392)
Confidence 999999988764
No 113
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.96 E-value=1.1e-26 Score=235.61 Aligned_cols=315 Identities=15% Similarity=0.147 Sum_probs=231.1
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC--EEEe-cccHHHHHhhhhhhccCCcEEEEcC
Q 011567 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD--SILY-SYGLSTMFSAIPCFCKKGDLIVADE 200 (483)
Q Consensus 124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~--~i~~-~sG~~a~~~ai~~~~~~gdiI~~~~ 200 (483)
.+|++.+++.+++ .+.. .....+...++++++++++|.+. .+++ ++|++|+..+++++.++||.|++..
T Consensus 24 ~~~~v~~a~~~~~----~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~ 95 (411)
T 3nnk_A 24 ADPRVLRAMSSQL----IGQY----DPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPV 95 (411)
T ss_dssp CCHHHHHHHTSCC----CCTT----CHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCHHHHHHhhccc----cccc----cHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEec
Confidence 3577777765443 1111 11123567899999999999753 2444 6779999999999999999999998
Q ss_pred CchhH--HHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHH
Q 011567 201 GVHWG--IQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273 (483)
Q Consensus 201 ~~h~s--~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k 273 (483)
+.|.+ +...+...|.+++.++.+ |+++|++.+++. ++++|+++++++++|.+.|+++|+++|++
T Consensus 96 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~---------~~~~v~~~~~~nptG~~~~l~~i~~l~~~ 166 (411)
T 3nnk_A 96 FGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRI---------RPRLLLTVQGDTSTTMLQPLAELGEICRR 166 (411)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH---------CCSEEEEESEETTTTEECCCTTHHHHHHH
T ss_pred CCchHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhC---------CCeEEEEeCCCCCcceeccHHHHHHHHHH
Confidence 88877 777788889998888765 888998888652 26788888889999999999999999999
Q ss_pred cCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCC-ceeeccHHHHHHHHhcC------------
Q 011567 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEG-GFCTGSARVVDHQRLSS------------ 339 (483)
Q Consensus 274 ~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~G-G~i~~~~~~~~~~~~~~------------ 339 (483)
||+++|+||++++|... ++....++|++++|++|++ |+.| |+++.++++++.++...
T Consensus 167 ~~~~li~Dea~~~~~~~---------~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 237 (411)
T 3nnk_A 167 YDALFYTDATASLGGNP---------LETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHR 237 (411)
T ss_dssp HTCEEEEECTTTBTTBC---------CCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCC
T ss_pred cCCEEEEECCcccCCcc---------cchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccccccc
Confidence 99999999999875432 1222234689999999986 4444 88999999988776432
Q ss_pred ----------------------CceeecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecC
Q 011567 340 ----------------------SGYVFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASN 395 (483)
Q Consensus 340 ----------------------~~~~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~ 395 (483)
.......+.++..++++.++++.+.+. +++.++++++.+++.+.|+++ ++.+..+
T Consensus 238 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 316 (411)
T 3nnk_A 238 DGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAM-GLETFGD 316 (411)
T ss_dssp CCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSC
T ss_pred cccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeCCC
Confidence 001122345777777777888876542 568889999999999999986 7776543
Q ss_pred C---CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc-cCCCCHHHHHHHHHHH
Q 011567 396 P---ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESL 471 (483)
Q Consensus 396 ~---~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~-~~~~t~edi~~~~~~l 471 (483)
. ...++.+.++... + ..++.+.++++.||.+.++..+. .+..+|+++ +..+|++|+++++++|
T Consensus 317 ~~~~~~~~~~~~~~~~~-----~---~~~l~~~l~~~~gi~v~~g~~~~-----~~~~iRi~~~~~~~~~~~i~~~~~~l 383 (411)
T 3nnk_A 317 LKHKMNNVLGVVIPQGI-----N---GDQARKLMLEDFGIEIGTSFGPL-----HGKVWRIGTMGYNARKDCVMTTLSAL 383 (411)
T ss_dssp GGGBCSSEEEEECCTTC-----C---HHHHHHHHHHHHSEEEEECCGGG-----TTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred cccccccEEEEECCCCC-----C---HHHHHHHHHHhcCeEEeCccCCC-----CCCEEEEeCccCcCCHHHHHHHHHHH
Confidence 2 2567777774211 1 23566666665599998753221 123599998 7778999999999999
Q ss_pred HHHHHHH
Q 011567 472 KRISAVV 478 (483)
Q Consensus 472 ~~~~~~~ 478 (483)
+++++++
T Consensus 384 ~~~l~~~ 390 (411)
T 3nnk_A 384 EAVLNYL 390 (411)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9998764
No 114
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.96 E-value=1.4e-27 Score=237.49 Aligned_cols=331 Identities=13% Similarity=0.131 Sum_probs=229.2
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC-EEEecccHHHHHhhhh
Q 011567 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD-SILYSYGLSTMFSAIP 187 (483)
Q Consensus 109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~-~i~~~sG~~a~~~ai~ 187 (483)
..+|||.+++. ++ .+|++.+++.+++..+ ...|+..+...++++++++++|.+. .+++++|++|+..+++
T Consensus 7 ~~~id~~~~~~-~~-~~~~v~~a~~~~~~~~-------~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~ 77 (356)
T 1v72_A 7 PPALGFSSDNI-AG-ASPEVAQALVKHSSGQ-------AGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLS 77 (356)
T ss_dssp CCCCBCSCGGG-CC-CCHHHHHHHHHTTSSC-------CCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHH
T ss_pred CceEeeccCCc-cC-CCHHHHHHHHhhccCc-------ccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHH
Confidence 46899998755 44 6799999998875321 1245666788999999999999655 4666999999999999
Q ss_pred hhccCCcEEEEcCCchhHHHhH--hhhc--CCeEEEecCC----CHHHHHH-HHHHhhhhhhhccCccEEEEEecccCCC
Q 011567 188 CFCKKGDLIVADEGVHWGIQNG--LYLS--RSTVVYFKHN----DMDSLRN-TLERVTADNKRAKKLRRYIVVEAVYQNS 258 (483)
Q Consensus 188 ~~~~~gdiI~~~~~~h~s~~~g--~~~s--~~~v~~~~~~----d~~~Le~-~l~~~~~~~~~~~~~~~~iv~e~v~~~~ 258 (483)
++.++||.|+++.++|++.... +... |.+++.++.+ |+++|++ .+++.... ...++++|++++++ ++
T Consensus 78 ~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~~i~~~~~~---~~~~~~~v~~~~~~-~t 153 (356)
T 1v72_A 78 AMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDV---HTTQPACVSITQAT-EV 153 (356)
T ss_dssp TSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCT---TSCEEEEEEEESSC-TT
T ss_pred HhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCCCCeEcHHHHHHHhhhcchhh---ccCCceEEEEEcCC-CC
Confidence 9999999999999999988766 7766 8888888765 6778877 66431100 01136788888875 58
Q ss_pred CCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHHHHH
Q 011567 259 GQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDH 334 (483)
Q Consensus 259 G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~~~~ 334 (483)
|.+.| +++|+++|++||+++|+||+|+.+.....|... ..+++. ...|+++.|++|+.++.| |++++++++++.
T Consensus 154 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~-~~~~~~-~~~d~~~~s~sK~g~~~G~g~~~~~~~~~~~ 231 (356)
T 1v72_A 154 GSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP-AEMTWK-AGVDALSFGATKNGVLAAEAIVLFNTSLATE 231 (356)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT-TTTTGG-GTCCEEEECCGGGTCSSCEEEEESSGGGHHH
T ss_pred CccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCH-HHhhhh-hcCCEEEEecccCCCcCccEEEEECHHHHhh
Confidence 99555 899999999999999999999754321111111 112211 134788889999944445 588888888876
Q ss_pred HHhcCCceeecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCc
Q 011567 335 QRLSSSGYVFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSM 412 (483)
Q Consensus 335 ~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~ 412 (483)
++.... +.+..+.....++.++++.+++. .+..++.+++.+++++.|++++|+++..+..++++++.++
T Consensus 232 ~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~------ 302 (356)
T 1v72_A 232 MSYRRK---RAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD------ 302 (356)
T ss_dssp HHHHHH---HTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC------
T ss_pred HHHHhh---ccCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC------
Confidence 543210 01111110112223345555432 2457778889999999998877888765667788887762
Q ss_pred hhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 413 KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 413 ~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
+ ++++.+. ++||.+.++.+. +..+|++++..+|++|+++++++|++++++.
T Consensus 303 --~-----~~~~~l~-~~gi~v~~g~~~-------~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 303 --S-----AMIDALL-KAGFGFYHDRWG-------PNVVRFVTSFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp --H-----HHHHHHH-HTTCBCBCSSSS-------TTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred --H-----HHHHHHH-hcCeEEeccccC-------CCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 1 4666654 569998865421 2459999999999999999999999887664
No 115
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.96 E-value=8e-27 Score=234.33 Aligned_cols=311 Identities=15% Similarity=0.159 Sum_probs=228.7
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC----EEEecccHHHHHhhhhhhccCCcEEEEc
Q 011567 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD----SILYSYGLSTMFSAIPCFCKKGDLIVAD 199 (483)
Q Consensus 124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~----~i~~~sG~~a~~~ai~~~~~~gdiI~~~ 199 (483)
.+|++.+++.+++..+ . .+...+...++++++++++|.+. .+++++|++++. ++.++.++||.|++.
T Consensus 13 ~~~~v~~a~~~~~~~~----~----~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~ 83 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGF----T----SKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVV 83 (384)
T ss_dssp CCHHHHHHTTCCSCCT----T----SHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEE
T ss_pred CCHHHHHHhhcccccc----c----cHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEe
Confidence 4577777766554321 0 12234678899999999999764 566688899999 999999999988887
Q ss_pred CCchhH--HHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHH
Q 011567 200 EGVHWG--IQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKE 272 (483)
Q Consensus 200 ~~~h~s--~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~ 272 (483)
...|.+ ....+...|.+++.++.+ |+++|++.+++. ++++|+++++++++|.+.|+++|.++|+
T Consensus 84 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~---------~~~~v~~~~~~nptG~~~~l~~i~~l~~ 154 (384)
T 3zrp_A 84 SNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKS---------EYKLVALTHVETSTGVREPVKDVINKIR 154 (384)
T ss_dssp CSSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHS---------CEEEEEEESEETTTTEECCHHHHHHHHG
T ss_pred cCCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhC---------CCcEEEEeCCCCCCceECcHHHHHHHHH
Confidence 777755 334456778888888764 788888888652 2678899999999999999999999999
Q ss_pred HcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCC-ceeeccHHHHHHH-Hh------------
Q 011567 273 KYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQ-RL------------ 337 (483)
Q Consensus 273 k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~~-~~------------ 337 (483)
+||+++|+||+|++|... .++...++|++++|++|+++ +.| |++++++++++.+ +.
T Consensus 155 ~~~~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (384)
T 3zrp_A 155 KYVELIVVDGVSSVGAEE---------VKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRN 225 (384)
T ss_dssp GGEEEEEEECTTTTTTSC---------CCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHH
T ss_pred hcCCEEEEECcccccCcc---------ccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHH
Confidence 999999999999876432 22222345999999999995 444 8888998887766 11
Q ss_pred cC---------CceeecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecCC----CCCEEE
Q 011567 338 SS---------SGYVFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNP----ESPIVF 402 (483)
Q Consensus 338 ~~---------~~~~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~----~~~i~~ 402 (483)
.. ... ..++.++..++++.++++.+.+. +++.++++++.+++.+.|+++ ++++..+. .+.+++
T Consensus 226 ~~~~~~~~~~~~~~-~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~ 303 (384)
T 3zrp_A 226 WLPVMRGAEEGKAA-YFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-GLEIVARRPESYSNTVTG 303 (384)
T ss_dssp HHHHHHHHHTTCCC-CSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSGGGBCSSEEE
T ss_pred HHHHHHhhcccCCC-cCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEccCcccccCccEEE
Confidence 00 111 11245666777777788876542 568899999999999999987 88776543 356777
Q ss_pred EEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567 403 LILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 479 (483)
Q Consensus 403 l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~ 479 (483)
+.+... ...++.+.+++ +||.+.++..... ..+|++++..+|++|+++++++|+++++++-
T Consensus 304 ~~~~~~---------~~~~~~~~l~~-~gi~v~~g~~~~~------~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 304 VILKVA---------DPQKVLAGTVN-EGVEFAPGVHPAF------KYFRIGHMGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp EECSSS---------CHHHHHHHHHT-TTCCCEECCCTTC------CEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred EECCCC---------CHHHHHHHHHH-CCEEEecCCCCCc------CEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 777431 12356776554 5999987652211 4599999999999999999999999998753
No 116
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.96 E-value=7.1e-27 Score=237.72 Aligned_cols=326 Identities=14% Similarity=0.124 Sum_probs=234.0
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHh-cCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHH
Q 011567 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEK-YGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMF 183 (483)
Q Consensus 107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~-~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~ 183 (483)
+|+.|+|+++. |. .+|.+.+++.+++++ ++......+...+..+...++++++++++|.+ +.++.++|++++.
T Consensus 27 ~~~~yld~~~~---~~-~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~ 102 (416)
T 1qz9_A 27 EGVIYLDGNSL---GA-RPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLF 102 (416)
T ss_dssp TTCEECCTTTS---CC-CBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHH
T ss_pred CCeEeecCCCc---CC-CcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHH
Confidence 35678887654 44 678999999999975 33211110101133467889999999999975 5556677788888
Q ss_pred hhhhhhc------cCCc-EEEEcCCchhHHHhHhh----hc--CCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567 184 SAIPCFC------KKGD-LIVADEGVHWGIQNGLY----LS--RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIV 250 (483)
Q Consensus 184 ~ai~~~~------~~gd-iI~~~~~~h~s~~~g~~----~s--~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv 250 (483)
.+++++. ++|| +|+++..+|.++..++. .. |.+++.++. +++|++.+++ ++++|+
T Consensus 103 ~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~l~~~i~~----------~~~~v~ 170 (416)
T 1qz9_A 103 KVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS--PEELPQAIDQ----------DTAVVM 170 (416)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS--GGGHHHHCST----------TEEEEE
T ss_pred HHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc--HHHHHHHhCC----------CceEEE
Confidence 8888775 7887 68888889987665542 23 788888877 7777776632 268999
Q ss_pred EecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc--CCC-ceeec
Q 011567 251 VEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA--TEG-GFCTG 327 (483)
Q Consensus 251 ~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg--~~G-G~i~~ 327 (483)
++++++++|.+.|+++|+++|++||+++|+||+|++|... ..+ ..+ ++|++++|++|+++ ..+ |++++
T Consensus 171 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~---~~~-~~~-----~~d~~~~s~~K~l~~g~~~~g~l~~ 241 (416)
T 1qz9_A 171 LTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVP---VDL-HQA-----GADYAIGCTYKYLNGGPGSQAFVWV 241 (416)
T ss_dssp EESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSC---CCH-HHH-----TCSEEEECSSSTTCCCTTCCCEEEE
T ss_pred EeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcC---CCh-hhc-----CCCEEEecCcccCCCCCCCeEEEEE
Confidence 9999999999999999999999999999999999865432 111 112 24899999999973 445 89888
Q ss_pred cHHHHHHHHhcCCce--------------------ee-cCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhh
Q 011567 328 SARVVDHQRLSSSGY--------------------VF-SASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGL 384 (483)
Q Consensus 328 ~~~~~~~~~~~~~~~--------------------~f-s~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L 384 (483)
++++++.++....++ .+ .++.++..++++.++++.+.+. +++.++++++.+++.+.|
T Consensus 242 ~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 321 (416)
T 1qz9_A 242 SPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELV 321 (416)
T ss_dssp CTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 888776554321111 12 2245777777788889887532 468889999999999999
Q ss_pred ccC-C--CceeecCC----CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc-
Q 011567 385 SDI-H--GLSIASNP----ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS- 456 (483)
Q Consensus 385 ~~~-~--~~~i~~~~----~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~- 456 (483)
+++ + |+.+..+. .++++++.+.+ ..++.+.++ ++||.+.... +..+|++++
T Consensus 322 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~l~-~~gi~~~~~~---------~~~lRis~~~ 380 (416)
T 1qz9_A 322 EQRCAAHELTLVTPREHAKRGSHVSFEHPE-----------GYAVIQALI-DRGVIGDYRE---------PRIMRFGFTP 380 (416)
T ss_dssp HHHHTTSCCEECSCSSGGGBCSEEEEECTT-----------HHHHHHHHH-TTTEECEEET---------TTEEEEECCT
T ss_pred HhhccCCCeEEeCCCCHHHcCCEEEEecCC-----------HHHHHHHHH-hCCcEeccCC---------CCeEEEeCcc
Confidence 875 5 78776542 36777777631 235666554 5699875321 245999997
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 011567 457 AAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 457 ~~~t~edi~~~~~~l~~~~~~~ 478 (483)
..+|++|+++++++|++++++.
T Consensus 381 ~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 381 LYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHhcc
Confidence 5899999999999999998763
No 117
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.96 E-value=9.9e-27 Score=234.67 Aligned_cols=326 Identities=13% Similarity=0.062 Sum_probs=231.8
Q ss_pred eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhhh
Q 011567 110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIP 187 (483)
Q Consensus 110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~ 187 (483)
.|+|..+. +. .+|.+.+++.+.+... + .+...+...++++.+++++|.+ ..++.++|++++..+++
T Consensus 10 ~yl~~~~~---~~-~~~~v~~a~~~~~~~~-------~-~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~ 77 (392)
T 2z9v_A 10 VITLTAGP---VN-AYPEVLRGLGRTVLYD-------Y-DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAA 77 (392)
T ss_dssp SEECSSSC---CC-CCHHHHHHTTSCCCCT-------T-SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHH
T ss_pred ceeecCCC---cC-CCHHHHHHHhcccccc-------c-cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHH
Confidence 46665532 22 5688888776655420 1 1223456789999999999975 45556888999999999
Q ss_pred hhccCCcEEEEcCCchhHHH--hHhhhcCCeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCC
Q 011567 188 CFCKKGDLIVADEGVHWGIQ--NGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQ 260 (483)
Q Consensus 188 ~~~~~gdiI~~~~~~h~s~~--~g~~~s~~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~ 260 (483)
++.++||.|+++.+.|.+.. ..+...|.+++.++. .|+++|++.+++. . ++++|+++++++++|.
T Consensus 78 ~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~-~-------~~~~v~~~~~~nptG~ 149 (392)
T 2z9v_A 78 SLISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAH-P-------EITVVSVCHHDTPSGT 149 (392)
T ss_dssp HHCCTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHC-T-------TCCEEEEESEEGGGTE
T ss_pred HhcCCCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcC-C-------CCcEEEEeccCCCCce
Confidence 99999998888888887653 223446778877764 3788888888642 1 2578888999999999
Q ss_pred ccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCC-ceeeccHHHHHHHHhc
Q 011567 261 IAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRLS 338 (483)
Q Consensus 261 i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~~~~~ 338 (483)
+.|+++|.++|++||+++|+||+|++|.... ++...++|++++|++|+++ +.| |++++++++++.++..
T Consensus 150 ~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~---------~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~ 220 (392)
T 2z9v_A 150 INPIDAIGALVSAHGAYLIVDAVSSFGGMKT---------HPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKAN 220 (392)
T ss_dssp ECCHHHHHHHHHHTTCEEEEECTTTBTTBSC---------CGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTC
T ss_pred eccHHHHHHHHHHcCCeEEEEcccccCCccc---------ccccccceEEEecCcccccCCCceeEEEECHHHHHHhhhc
Confidence 9999999999999999999999998654321 1111134899999999775 445 8999999988877531
Q ss_pred C------------------CceeecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeec-CC-
Q 011567 339 S------------------SGYVFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIAS-NP- 396 (483)
Q Consensus 339 ~------------------~~~~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~-~~- 396 (483)
. ....+.++.++..++++.++++.+.+. ++..++++++.+++++.|+++ |+++.. +.
T Consensus 221 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 299 (392)
T 2z9v_A 221 PLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM-GLSVWAASDS 299 (392)
T ss_dssp TTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGG
T ss_pred cCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CCeeccCCcc
Confidence 1 011223445677777777788776542 467888999999999999887 877764 21
Q ss_pred --CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccC-CCCHHHHHHHHHHHHH
Q 011567 397 --ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSA-AHSEADLVKACESLKR 473 (483)
Q Consensus 397 --~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~-~~t~edi~~~~~~l~~ 473 (483)
.++++++.++... + ..++.+.++++.||.+.+...+. .+..+|+++.. .+|++|+++++++|++
T Consensus 300 ~~~~~~~~~~~~~~~-----~---~~~l~~~L~~~~gi~v~~g~~~~-----~~~~lRi~~~~~~~~~~~i~~~~~~l~~ 366 (392)
T 2z9v_A 300 IASPTTTAVRTPDGV-----D---EKALRQAARARYGVVFSSGRGET-----LGKLTRIGHMGPTAQPIYAIAALTALGG 366 (392)
T ss_dssp GBCTTEEEEECCTTC-----C---HHHHHHHHHHHHCEECEECCGGG-----TTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred ccCCceEEEECCCCC-----C---HHHHHHHHHhcCCEEEecCCCCC-----CCCeEEEeCcccccCHHHHHHHHHHHHH
Confidence 4677888774211 1 23566665544499998764321 13459999644 7999999999999999
Q ss_pred HHHHH
Q 011567 474 ISAVV 478 (483)
Q Consensus 474 ~~~~~ 478 (483)
+++++
T Consensus 367 ~~~~~ 371 (392)
T 2z9v_A 367 AMNAA 371 (392)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 98764
No 118
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.95 E-value=5.2e-27 Score=238.75 Aligned_cols=335 Identities=16% Similarity=0.143 Sum_probs=224.5
Q ss_pred CeeEEEeecCCCCCCCC----ChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC---CEEEecccHH
Q 011567 108 GKEVVNFASANYLGLIG----HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP---DSILYSYGLS 180 (483)
Q Consensus 108 G~~~id~~s~~~lG~~~----~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e---~~i~~~sG~~ 180 (483)
|+++|||+.+++++..+ .+.+.+++.+.......++. ...|..++...+++.+.+..+.+ +.+++++|++
T Consensus 36 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~---~~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~ 112 (413)
T 3t18_A 36 REAVINAALGTLLDDKGKIIALPSVYDRLDEMDRSHIASYA---PIEGEKDYRKIVIDTLFGPYKPEGYISAIATPGGTG 112 (413)
T ss_dssp GGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHHHHSCC---CTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHH
T ss_pred ccceEeccccCccCCCCCcCChHHHHHHHHhcCcccccCcC---CCCCCHHHHHHHHHHHhcccCccccCcEEEcCccHH
Confidence 56899999998865543 34565555442211001111 12345556666666665555555 6777788899
Q ss_pred HHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC------CCHHHHHHHHHHhhhhhhhccCccEEEEEecc
Q 011567 181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAV 254 (483)
Q Consensus 181 a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v 254 (483)
|+..++++++++||.|+++.++|..+...++..|.+++.++. .|+++|++.+++.... +++++++++++
T Consensus 113 al~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~-----~~~~~vi~~~p 187 (413)
T 3t18_A 113 AIRSAIFSYLDEGDPLICHDYYWAPYRKICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRD-----SDRIASLINSP 187 (413)
T ss_dssp HHHHHHHHHCCSSCEEEEESSCCTHHHHHHHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHH-----CSEEEEEEECS
T ss_pred HHHHHHHHhcCCCCEEEECCCCcccHHHHHHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhc-----CCCEEEEEeCC
Confidence 999999999999999999999999999999999999988874 2788998888653211 13447778776
Q ss_pred -cCCCCCccCh---HHHHHHHH------HcCcEEEEeCccccccccCCCC---cccc-ccCCCCCceeEEEccccccccC
Q 011567 255 -YQNSGQIAPL---DELIRLKE------KYRFRVFLDESNSFGVLGRSGR---GLTE-HCGVPVDKIDIVTAAMGHALAT 320 (483)
Q Consensus 255 -~~~~G~i~~L---~~l~~l~~------k~~~~li~DEa~s~g~lg~~G~---g~~~-~~~v~~~~~Di~~~s~~K~lg~ 320 (483)
++++|.+.|. ++|+++|+ +||+++|+||+|+... .+|. .+.. ..+++++.+.++++|+||++|.
T Consensus 188 ~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~ 265 (413)
T 3t18_A 188 GNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFA--GDGDQQRKFFEKFSNLPRNLFVVVAFSMSKSHTA 265 (413)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGS--SSSSTTTGGGGGGTTCCTTEEEEEEEEHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEeccccccc--CChhhHHHHHHHHhhcCCCeeEEEEEecCccCCC
Confidence 7899999995 55566666 9999999999987543 2332 2222 2334433234788999999997
Q ss_pred CC---ceeec---cHHHHHHHHhcCCceeec--CCCcHHHHHHHHHHHHHH------hcCcHHHHHHHHHHHHHHHhhcc
Q 011567 321 EG---GFCTG---SARVVDHQRLSSSGYVFS--ASLPPYLASAAITAIDVL------EENPDLITKLKKNTAILRTGLSD 386 (483)
Q Consensus 321 ~G---G~i~~---~~~~~~~~~~~~~~~~fs--~~~~p~~~aaa~~al~~l------~~~~~~~~~l~~~~~~l~~~L~~ 386 (483)
.| ||+++ ++++++.++.......++ .+.++..++++.++++.. +...+++++++++.+++.+.|++
T Consensus 266 ~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 345 (413)
T 3t18_A 266 YGLRSGAAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSRADVFVTAAKE 345 (413)
T ss_dssp GGGCCEEEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCcEEEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 99988 899888776432221111 234666666666655432 22235677888999999999988
Q ss_pred CCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHH
Q 011567 387 IHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVK 466 (483)
Q Consensus 387 ~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~ 466 (483)
+ |+++..+..+.++++.+. + ..++++. |.++||.+.++ +..+||+++.. +++++
T Consensus 346 ~-g~~~~~~~~~~~~~~~~~--------~---~~~~~~~-l~~~gv~v~~g----------~~~iRis~~~~-~~~~~-- 399 (413)
T 3t18_A 346 N-KLTMIPYFGGFFTFIPTD--------K---AFDIVKD-LEKENIFTIPS----------AKGIRVAICGV-GEEKI-- 399 (413)
T ss_dssp T-TCCCBCCCSSSCEEEECS--------C---HHHHHHH-HHHTTEECEEC----------SSEEEECTTTS-CGGGH--
T ss_pred c-CCCccCCCceEEEEeCCC--------C---HHHHHHH-HHhCCEEEecC----------CCceEEEEeeC-CHHHH--
Confidence 7 887765544555555541 1 2245654 45679999875 13499998854 55555
Q ss_pred HHHHHHHHHHHHH
Q 011567 467 ACESLKRISAVVL 479 (483)
Q Consensus 467 ~~~~l~~~~~~~~ 479 (483)
++.|+++++++.
T Consensus 400 -l~~l~~~l~~~~ 411 (413)
T 3t18_A 400 -PKLVQRLAFYTN 411 (413)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHh
Confidence 777777776653
No 119
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.95 E-value=3.3e-26 Score=233.96 Aligned_cols=336 Identities=12% Similarity=0.116 Sum_probs=229.3
Q ss_pred eEEEeecC-CCCCCCCChHHHHHHHHHH---------------HhcCCCCCCCCCcccChHHHHHHHHHHHhhhC-----
Q 011567 110 EVVNFASA-NYLGLIGHEKLLESCTSAL---------------EKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG----- 168 (483)
Q Consensus 110 ~~id~~s~-~~lG~~~~p~i~~a~~~~l---------------~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g----- 168 (483)
.++||.++ |.+++ |.+.+++.++. ..|+. ..-..++++.++++++
T Consensus 37 ~~i~l~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-----------~~g~~~lr~~la~~~~~~~g~ 102 (428)
T 1iay_A 37 GVIQMGLAENQLCL---DLIEDWIKRNPKGSICSEGIKSFKAIANFQD-----------YHGLPEFRKAIAKFMEKTRGG 102 (428)
T ss_dssp SBEECSSCCCCSSH---HHHHHHHHHCTTSSTTC----CHHHHHHCCC-----------TTCCHHHHHHHHHHHHHHTTT
T ss_pred ceeeeccccchhhH---HHHHHHHHhccccccccccccccHhhcCCCC-----------CCCcHHHHHHHHHHHHHhcCC
Confidence 46899876 66654 67777776432 22321 1113567777777765
Q ss_pred -----CCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhh-hcCCeEEEecCC-------CHHHHHHHHHHh
Q 011567 169 -----TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY-LSRSTVVYFKHN-------DMDSLRNTLERV 235 (483)
Q Consensus 169 -----~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~-~s~~~v~~~~~~-------d~~~Le~~l~~~ 235 (483)
.+..++.++|++++..++++++++||.|++..+.|.++..++. ..|.+++.++.+ |+++|++.+++.
T Consensus 103 ~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 182 (428)
T 1iay_A 103 RVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENA 182 (428)
T ss_dssp CSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHH
T ss_pred CCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHH
Confidence 2345555777799999999999999999999998888776554 678888888753 678888887653
Q ss_pred hhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccC---------CC
Q 011567 236 TADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCG---------VP 303 (483)
Q Consensus 236 ~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~---------v~ 303 (483)
... ..++++|+++.+++++|.+.| +++|+++|++||+++|+||+|+.+.++. .+...... +.
T Consensus 183 ~~~----~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 256 (428)
T 1iay_A 183 QKS----NIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDT--PQFVSIAEILDEQEMTYCN 256 (428)
T ss_dssp HHT----TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSS--SCCCCHHHHHTSGGGTTSC
T ss_pred Hhc----CCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCC--CCccCHHHhccccccccCC
Confidence 211 113567777777888999999 9999999999999999999998765532 22211111 11
Q ss_pred CCceeEEEccccccccCCC---ceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh----cCcHHHHHHHH
Q 011567 304 VDKIDIVTAAMGHALATEG---GFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE----ENPDLITKLKK 375 (483)
Q Consensus 304 ~~~~Di~~~s~~K~lg~~G---G~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~----~~~~~~~~l~~ 375 (483)
++ ..+++.|+||++|..| ||+++ ++++++.++..... + +.++..++++.++++... ..++.++++++
T Consensus 257 ~d-~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 331 (428)
T 1iay_A 257 KD-LVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSF--G--LVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGK 331 (428)
T ss_dssp TT-SEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTT--S--CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CC-cEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHhc--c--cCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 21 1277899999998666 88887 67888877643222 2 346666766766665322 12357788889
Q ss_pred HHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc
Q 011567 376 NTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV 455 (483)
Q Consensus 376 ~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~ 455 (483)
+.+++.+.|+++ |+++..+..+.++++.+...... .+.....++.+.++++.||.+.+....... .+..+||++
T Consensus 332 ~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~---~~~~iRis~ 405 (428)
T 1iay_A 332 RHKHFTNGLEVV-GIKCLKNNAGLFCWMDLRPLLRE--STFDSEMSLWRVIINDVKLNVSPGSSFECQ---EPGWFRVCF 405 (428)
T ss_dssp HHHHHHHHHHHT-TCCBCCCSSSSEEEEECGGGCSS--SSHHHHHHHHHHHHHTSCEECEEGGGGTCS---SSSEEEEEC
T ss_pred HHHHHHHHHHhc-CCcccCCCeeEEEEEechhhcCC--CchhHHHHHHHHHHHhCCEEEeCchhhCCC---CCCEEEEEE
Confidence 999999999887 77776444677888887532100 011223467777666559999886543211 024599999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q 011567 456 SAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 456 ~~~~t~edi~~~~~~l~~~~~~ 477 (483)
+ .+|++++++++++|++++++
T Consensus 406 ~-~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 406 A-NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp S-SSCHHHHHHHHHHHHHHHHT
T ss_pred e-cCCHHHHHHHHHHHHHHHhc
Confidence 8 58999999999999988753
No 120
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.95 E-value=1.2e-26 Score=233.76 Aligned_cols=317 Identities=13% Similarity=0.145 Sum_probs=227.9
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--C-EEEecccHHHHHhhhhhhccCCcEEEEcC
Q 011567 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--D-SILYSYGLSTMFSAIPCFCKKGDLIVADE 200 (483)
Q Consensus 124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~-~i~~~sG~~a~~~ai~~~~~~gdiI~~~~ 200 (483)
.+|++.+++.+++.. .. .....+...++++++++++|.+ + .++.++|++|+..+++++.++||.|++..
T Consensus 34 ~~~~v~~a~~~~~~~----~~----~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~ 105 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIG----HM----QKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGT 105 (393)
T ss_dssp CCHHHHHHTTCCCCC----TT----SHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEE
T ss_pred CCHHHHHHhcccccC----cc----cHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEe
Confidence 457777776553211 10 1122457789999999999965 2 44558999999999999999999888877
Q ss_pred CchhH--HHhHhhhcCCeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHH
Q 011567 201 GVHWG--IQNGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273 (483)
Q Consensus 201 ~~h~s--~~~g~~~s~~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k 273 (483)
..|++ ....+...|.+++.++. .|+++|++.+++. ++++|+++++++++|.+.|+++|+++|++
T Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~---------~~~~v~~~~~~nptG~~~~l~~i~~l~~~ 176 (393)
T 3kgw_A 106 NGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQH---------KPVLLFLVHGESSTGVVQPLDGFGELCHR 176 (393)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH---------CCSEEEEESEETTTTEECCCTTHHHHHHH
T ss_pred CCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhC---------CCcEEEEeccCCcchhhccHHHHHHHHHH
Confidence 66653 35666777888877763 3788898888652 25688888889999999999999999999
Q ss_pred cCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCC-ceeeccHHHHHHHHhcCCce---------
Q 011567 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRLSSSGY--------- 342 (483)
Q Consensus 274 ~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~~~~~~~~~--------- 342 (483)
||+++|+||+|++|... +++...++|+++.|++|+++ +.| |++++++++++.+.....++
T Consensus 177 ~~~~li~De~~~~g~~~---------~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (393)
T 3kgw_A 177 YQCLLLVDSVASLGGVP---------IYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITY 247 (393)
T ss_dssp TTCEEEEECTTTTTTSC---------CCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHH
T ss_pred cCCEEEEECCccccCcc---------cchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHH
Confidence 99999999999865321 22222345899999999884 444 88999999988876432111
Q ss_pred ------------eecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecCC----CCCEEEEE
Q 011567 343 ------------VFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNP----ESPIVFLI 404 (483)
Q Consensus 343 ------------~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~----~~~i~~l~ 404 (483)
.+..+.++..++++.++++.+.+. +++.++++++.+++.+.|+++ ++++.... ...++++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 326 (393)
T 3kgw_A 248 LAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM-GLKFFVKDPEIRLPTITTVT 326 (393)
T ss_dssp HHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCSSEEEEE
T ss_pred HHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcCCeEEEEe
Confidence 122345777777777888876542 568899999999999999987 77765321 23455676
Q ss_pred ecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc-cCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567 405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 405 l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~-~~~~t~edi~~~~~~l~~~~~~~~~ 480 (483)
+.... + ..++.+.++++.||.+.++..+.. +..+|+++ +..+|++|+++++++|+++++++.+
T Consensus 327 ~~~~~-----~---~~~~~~~l~~~~gi~v~~g~~~~~-----~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~ 390 (393)
T 3kgw_A 327 VPAGY-----N---WRDIVSYVLDHFSIEISGGLGPTE-----ERVLRIGLLGYNATTENVDRVAEALREALQHCPK 390 (393)
T ss_dssp CCTTB-----C---HHHHHHHHHHHHCEECBCCCGGGT-----TTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCB
T ss_pred CCCCC-----C---HHHHHHHHHHhCCEEEeCCcccCC-----CCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhh
Confidence 64211 1 235677666554999987643221 24599998 6667999999999999999987644
No 121
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.95 E-value=4.4e-27 Score=233.37 Aligned_cols=330 Identities=18% Similarity=0.221 Sum_probs=224.1
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhh
Q 011567 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPC 188 (483)
Q Consensus 109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~ 188 (483)
.++|||.++.... ..|.+.+++.+... + ...|+..+...+|+++|++++|.++.+++++|++|+..++.+
T Consensus 3 ~~~i~~~~~~~~~--p~~~~~~a~~~~~~----~----~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~ 72 (347)
T 1jg8_A 3 HMMIDLRSDTVTK--PTEEMRKAMAQAEV----G----DDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMA 72 (347)
T ss_dssp --CEECSCGGGCC--CCHHHHHHHHTCCC----C----CGGGTCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHH
T ss_pred ceEEEeccccCCC--CCHHHHHHHhcCCC----C----CcccCCChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHH
Confidence 3678999884432 45777777654321 0 113555567789999999999999999999999999999999
Q ss_pred hccCCcEEEEcCCchhHHHh---HhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC-C
Q 011567 189 FCKKGDLIVADEGVHWGIQN---GLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS-G 259 (483)
Q Consensus 189 ~~~~gdiI~~~~~~h~s~~~---g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~-G 259 (483)
+.++||.|+++.++|.+... .+...|.+++.+ .+ |+++|++.+++... ...++++|+++++++++ |
T Consensus 73 ~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~----~~~~~~~v~~~~~~npt~G 147 (347)
T 1jg8_A 73 HTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNI----HFPRTSLIAIENTHNRSGG 147 (347)
T ss_dssp HCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCT----TSCCEEEEEEESSBTTTTS
T ss_pred hcCCCCEEEEcCcchhhhccccchhhccCeEEEEe-cCCCCccCHHHHHHHhccccc----cccCceEEEEeccccccCC
Confidence 99999999999999987654 356678888777 43 67777776643100 00136889999999998 9
Q ss_pred CccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccC-CCceeeccHHHHHHH
Q 011567 260 QIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT-EGGFCTGSARVVDHQ 335 (483)
Q Consensus 260 ~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~-~GG~i~~~~~~~~~~ 335 (483)
.+.| +++|+++|++||+++|+||+|.++.++..|..... +. ..+|.++.|++|++++ .||++++++++++.+
T Consensus 148 ~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~-~~---~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~~~ 223 (347)
T 1jg8_A 148 RVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKE-YA---GYADSVMFCLSKGLCAPVGSVVVGDRDFIERA 223 (347)
T ss_dssp BCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHH-HH---HTCSEEEEESSSTTCCSSCEEEEECHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHH-hc---ccccEEEEecccccCCCceEEEEcCHHHHHHH
Confidence 9887 57899999999999999999865432211221111 11 1236667799999984 455777888887765
Q ss_pred HhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee-cCCCCCEEEEEecCCCCCchh
Q 011567 336 RLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA-SNPESPIVFLILEKSTGSMKN 414 (483)
Q Consensus 336 ~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~-~~~~~~i~~l~l~~~~~~~~~ 414 (483)
+.....+..+...++..++++..+++...+ ..++..++.+++.+.|+++ ++.+. .++.++++++.++... .
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~--~-- 295 (347)
T 1jg8_A 224 RKARKMLGGGMRQAGVLAAAGIIALTKMVD---RLKEDHENARFLALKLKEI-GYSVNPEDVKTNMVILRTDNLK--V-- 295 (347)
T ss_dssp HHHHHHHTCCCSSTHHHHHHHHHHHHHSST---THHHHHHHHHHHHHHHHHH-TCBCCGGGCCSSEEEEECTTSS--S--
T ss_pred HHHHHHcCCchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc-CceeccCCCcceEEEEEccccc--C--
Confidence 432111111122345666666666664322 2344456778888888876 76642 2446778888774211 0
Q ss_pred hHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 415 DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 415 ~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
+ ..++++.+.+ +||.+.+.. +..+|++++..+|++|+++++++|+++++++
T Consensus 296 ~---~~~~~~~l~~-~gi~v~~~~---------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~ 346 (347)
T 1jg8_A 296 N---AHGFIEALRN-SGVLANAVS---------DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 346 (347)
T ss_dssp C---HHHHHHHHHH-HTEECEEEE---------TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred C---HHHHHHHHHH-CCCEEecCC---------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 1 2356776554 599998642 1349999988899999999999999987653
No 122
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.95 E-value=2.8e-27 Score=235.41 Aligned_cols=329 Identities=18% Similarity=0.165 Sum_probs=229.2
Q ss_pred eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhhh
Q 011567 110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIP 187 (483)
Q Consensus 110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~ 187 (483)
.+++|.+ ++.|+ .+|.+.+++.+++..|+. ..|..+...++++.+++++|.+ +.+++++|++|+..+++
T Consensus 14 ~~i~l~~-~~~~~-~~~~v~~a~~~~~~~~~~-------~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~ 84 (359)
T 1svv_A 14 KPYSFVN-DYSVG-MHPKILDLMARDNMTQHA-------GYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACS 84 (359)
T ss_dssp -CEECSC-SCSSC-CCHHHHHHHHHHTTCCCC-------STTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHH
T ss_pred eeEEecC-CCcCC-CCHHHHHHHHHHHhhccc-------cccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHH
Confidence 4788887 55665 789999999999987654 2355688999999999999864 35666899999999999
Q ss_pred hhccCCcEEEEcCCchhHHHhH--hhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc
Q 011567 188 CFCKKGDLIVADEGVHWGIQNG--LYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI 261 (483)
Q Consensus 188 ~~~~~gdiI~~~~~~h~s~~~g--~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i 261 (483)
++.++||.|+++.+.|.++..+ +...|.+++.++.+ |+++|++.+++.... ...++++|+++++ +++|.+
T Consensus 85 ~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~---~~~~~~~v~~~~~-~ptG~~ 160 (359)
T 1svv_A 85 LALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSE---HMVIPKLVYISNT-TEVGTQ 160 (359)
T ss_dssp HHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCST---TSCEEEEEEEESS-CTTSCC
T ss_pred HHhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCCCCeecHHHHHHHHHHHHhc---cCCCceEEEEEcC-CCCcee
Confidence 9999999999999999998874 77788899888875 488898888653100 0113677777777 678999
Q ss_pred cC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHHHHHHHh
Q 011567 262 AP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRL 337 (483)
Q Consensus 262 ~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~~~~~~~ 337 (483)
.| +++|+++|++||+++|+||+|....+|..+... ..+++. ...|+++.|.+|..++.| |+++.++++++.++.
T Consensus 161 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~-~~~d~~~~s~~K~g~~~~~g~l~~~~~~~~~~~~ 238 (359)
T 1svv_A 161 YTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDL-TLADIA-RLTDMFYIGATKAGGMFGEALIILNDALKPNARH 238 (359)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCC-CHHHHH-HHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHH
T ss_pred cCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcch-hhhhhh-hcCCEEEEecccCCCCCceEEEEEcccHHHHHHH
Confidence 99 999999999999999999999332233322211 111110 124888889999876666 888888887766543
Q ss_pred c--CCceeecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCch
Q 011567 338 S--SSGYVFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMK 413 (483)
Q Consensus 338 ~--~~~~~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~ 413 (483)
. ..++.++.+ .+.. ++..+ .+++. ++..++++++.+++.+.| +.+++++..+..++++++.+.
T Consensus 239 ~~~~~~~~~~~~-~~~~-~~~~~---~l~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~------- 305 (359)
T 1svv_A 239 LIKQRGALMAKG-WLLG-IQFEV---LMKDNLFFELGAHSNKMAAILKAGL-EACGIRLAWPSASNQLFPILE------- 305 (359)
T ss_dssp HHHHTTCCCTTT-HHHH-HHHHH---HTSTTHHHHHHHHHHHHHHHHHHHH-HHTTCCBSSCCSSSEECBEEE-------
T ss_pred HHhcCCcccccc-hhhH-HHHHH---HHhhhhHHHHHHHHHHHHHHHHHHh-ccCCeEEccCCccceEEEEcC-------
Confidence 2 123333322 2222 22222 23322 357888899999999999 556888775556777766652
Q ss_pred hhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 414 NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 414 ~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
.++++.++++.||.+.... +. .+..+|++++..+|++|+++++++|+++++++
T Consensus 306 ------~~~~~~l~~~~gi~v~~~~-~~-----~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 306 ------NTMIAELNNDFDMYTVEPL-KD-----GTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp ------HHHHHHHTTTEECEEEEEE-TT-----TEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred ------HHHHHHHHHhcCEEEEecc-cC-----CCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 1466655443389883211 00 12349999999999999999999999887653
No 123
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.95 E-value=3.1e-26 Score=231.08 Aligned_cols=316 Identities=17% Similarity=0.185 Sum_probs=225.6
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC--EE-EecccHHHHHhhhhhhccCCcEEEEcC
Q 011567 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD--SI-LYSYGLSTMFSAIPCFCKKGDLIVADE 200 (483)
Q Consensus 124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~--~i-~~~sG~~a~~~ai~~~~~~gdiI~~~~ 200 (483)
.+|.+.+++.+++... . .....+...++++++++++|.+. .+ +.++|++|+..+++++.++||.|++..
T Consensus 30 ~~~~v~~a~~~~~~~~----~----~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~ 101 (393)
T 2huf_A 30 APQRVLDAMSRPILGH----L----HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIGH 101 (393)
T ss_dssp CCHHHHHHTTSCCCCT----T----SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCHHHHHHHHhhhccC----C----CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEEC
Confidence 5688888876655421 0 11123578899999999999753 45 448889999999999999999888888
Q ss_pred CchhHHH--hHhhhcCCeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHH
Q 011567 201 GVHWGIQ--NGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273 (483)
Q Consensus 201 ~~h~s~~--~g~~~s~~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k 273 (483)
+.|.+.. ..++..|.+++.++. .|+++|++.+++. ++++|+++++++++|.+.|+++|+++|++
T Consensus 102 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~---------~~~~v~~~~~~nptG~~~~l~~i~~~~~~ 172 (393)
T 2huf_A 102 TGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIH---------KPSVLFLTQGDSSTGVLQGLEGVGALCHQ 172 (393)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH---------CCSEEEEESEETTTTEECCCTTHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhcc---------CCcEEEEEccCCCccccCCHHHHHHHHHH
Confidence 8777632 233446788877763 4788888887642 15678888899999999999999999999
Q ss_pred cCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCC-ceeeccHHHHHHHHhc---CCcee-----
Q 011567 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRLS---SSGYV----- 343 (483)
Q Consensus 274 ~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~~~~~---~~~~~----- 343 (483)
||+++|+||++++|... .++...++|++++|++|+++ +.| |++++++++++.++.. ..++.
T Consensus 173 ~~~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (393)
T 2huf_A 173 HNCLLIVDTVASLGGAP---------MFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSL 243 (393)
T ss_dssp TTCEEEEECTTTBTTBC---------CCTTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHH
T ss_pred cCCEEEEEcccccCCCC---------cchhhcCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEchHH
Confidence 99999999999865321 12222245999999999864 455 8999999998887643 11211
Q ss_pred ------------ec-CCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecCC--CCC-EEEEEe
Q 011567 344 ------------FS-ASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNP--ESP-IVFLIL 405 (483)
Q Consensus 344 ------------fs-~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~--~~~-i~~l~l 405 (483)
+. ++.+...++++.++++.+.+ .++..++++++++++.+.|+++ |+.+..+. .++ ++.+.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 322 (393)
T 2huf_A 244 VGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA-GFELYADPKDRLSTVTTIKV 322 (393)
T ss_dssp HHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCTTEEEEEC
T ss_pred HHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCccccCCcEEEEEc
Confidence 11 23466666666678887643 3567888999999999999987 87776432 233 777777
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc-cCCCCHHHHHHHHHHHHHHHHHHH
Q 011567 406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRISAVVL 479 (483)
Q Consensus 406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~-~~~~t~edi~~~~~~l~~~~~~~~ 479 (483)
+... + ..++.+.++++.||.+.+...+. .+..+|+++ +...+++|+++++++|+++++++-
T Consensus 323 ~~~~-----~---~~~~~~~L~~~~gi~v~~g~~~~-----~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~ 384 (393)
T 2huf_A 323 PQGV-----D---WLKAAQYAMKTYLVEISGGLGPT-----AGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVK 384 (393)
T ss_dssp CTTC-----C---HHHHHHHHHHHHCEECBCCCGGG-----TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred CCCC-----C---HHHHHHHHHHhCCEEEecCcccc-----cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 4211 1 23566665555599998654321 124599999 545689999999999999988753
No 124
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.95 E-value=9.2e-26 Score=230.56 Aligned_cols=315 Identities=15% Similarity=0.166 Sum_probs=220.8
Q ss_pred cccChHHHHHHHHHHHhhhCCC----------CEEEe-cccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeE
Q 011567 149 FYGTIDVHLDCEARIAKFLGTP----------DSILY-SYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTV 217 (483)
Q Consensus 149 ~~g~~~~~~~l~~~La~~~g~e----------~~i~~-~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v 217 (483)
..|..++...+++.++++.|.+ +.+++ +++++++..++++++++||.|+++.+.|..+...++..|.++
T Consensus 77 ~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 156 (425)
T 2r2n_A 77 SAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLGCNI 156 (425)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHGGGTCEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEE
Confidence 3566677777788777777743 35555 666789999999999999999999999999999999999998
Q ss_pred EEecCC----CHHHHHHHHHHhhhhhh--hccCccEEEEE-ecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccc
Q 011567 218 VYFKHN----DMDSLRNTLERVTADNK--RAKKLRRYIVV-EAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFG 287 (483)
Q Consensus 218 ~~~~~~----d~~~Le~~l~~~~~~~~--~~~~~~~~iv~-e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g 287 (483)
+.++.+ |+++|++.+++.....+ ....++++|++ +.+++++|.+.| +++|+++|++||+++|+||+|+.+
T Consensus 157 ~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~ 236 (425)
T 2r2n_A 157 INVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFL 236 (425)
T ss_dssp EEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGG
T ss_pred EEeCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence 888753 78888888863210000 00012456655 567888999998 559999999999999999999976
Q ss_pred cccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh
Q 011567 288 VLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE 364 (483)
Q Consensus 288 ~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~ 364 (483)
.++ |........++..+.+++++|+||+++ .| ||+++++++++.++.......+ +.+++..+++.++++.+.
T Consensus 237 ~~~--g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l~~~~~~~~~--~~~~~~q~a~~~~l~~~~ 311 (425)
T 2r2n_A 237 QFN--KFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQVSTL--HPSTFNQLMISQLLHEWG 311 (425)
T ss_dssp BSS--SSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHHHHHHHTTTC--SSCHHHHHHHHHHHHHHH
T ss_pred cCC--CCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecCHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcc
Confidence 553 222222223333455788999999998 66 9999999998877654322223 346777777777777531
Q ss_pred ------cCcHHHHHHHHHHHHHHHhhcc-CCCc-eeecCCCCCEEEEEecCCCCCchhhHHHHHH-HHHHHHHhCCEEEE
Q 011567 365 ------ENPDLITKLKKNTAILRTGLSD-IHGL-SIASNPESPIVFLILEKSTGSMKNDLQLLED-IADWALKEDGVFVV 435 (483)
Q Consensus 365 ------~~~~~~~~l~~~~~~l~~~L~~-~~~~-~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~-i~~~~l~~~Gv~v~ 435 (483)
...++++.++++.+++.+.|++ ++++ .+..+..+.++++.++.... . .+ +.+. +.++||.+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~----~----~~~~~~~-l~~~gv~v~ 382 (425)
T 2r2n_A 312 EEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGIND----V----KELIEEK-AVKMGVLML 382 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSC----C----HHHHHTH-HHHTTEECE
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCC----H----HHHHHHH-HHHCCcEEe
Confidence 1234667788888888888876 5676 34445567788888854211 1 12 3443 456799999
Q ss_pred eecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 436 TSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 436 ~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
++..+..........+||+++. .|++++++++++|++++++.
T Consensus 383 pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 383 PGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp EGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHh
Confidence 8765432111112459999874 69999999999999998764
No 125
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.95 E-value=1.5e-26 Score=235.75 Aligned_cols=337 Identities=12% Similarity=0.125 Sum_probs=226.9
Q ss_pred CeeEEEeecCCCCCCC----CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC---CEEEecccHH
Q 011567 108 GKEVVNFASANYLGLI----GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP---DSILYSYGLS 180 (483)
Q Consensus 108 G~~~id~~s~~~lG~~----~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e---~~i~~~sG~~ 180 (483)
|+++|||+.++|++.. ..+.+.+++.+.......+.+ ...|..++...+++.+....+.+ +.+++++|++
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~---~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~ 113 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYA---PIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTG 113 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCC---CTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHH
T ss_pred CCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCC---CCCChHHHHHHHHHHHhcccCccccccEEECCchHH
Confidence 5679999999774432 345566655443221001111 12344444455555554444655 6777788899
Q ss_pred HHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC------CCHHHHHHHHHHhhhhhhhccCccEEEEEecc
Q 011567 181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAV 254 (483)
Q Consensus 181 a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v 254 (483)
|+..++++++++||.|+++.++|..+...+...|.+++.++. .|+++|++.+++.... +++++++++++
T Consensus 114 al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~-----~~~~~vi~~~p 188 (418)
T 3rq1_A 114 GIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAK-----QTNVVVIFNTP 188 (418)
T ss_dssp HHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHH-----CSEEEEEEECS
T ss_pred HHHHHHHHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhcc-----CCCEEEEEeCC
Confidence 999999999999999999999999999999999999988874 2788898888753211 13457777766
Q ss_pred -cCCCCCccC---hHHHHHHHH------HcCcEEEEeCccccccccCCCC---ccc-cccCCCCCceeEEEccccccccC
Q 011567 255 -YQNSGQIAP---LDELIRLKE------KYRFRVFLDESNSFGVLGRSGR---GLT-EHCGVPVDKIDIVTAAMGHALAT 320 (483)
Q Consensus 255 -~~~~G~i~~---L~~l~~l~~------k~~~~li~DEa~s~g~lg~~G~---g~~-~~~~v~~~~~Di~~~s~~K~lg~ 320 (483)
++++|.+.| +++|+++|+ +||+++|+||+|+... .+|. .+. ...++.++-+.++++|+||++|.
T Consensus 189 ~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~ 266 (418)
T 3rq1_A 189 GNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYS--GEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTM 266 (418)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGS--SCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccc--CChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcC
Confidence 899999999 555666666 8999999999997543 2222 222 22334332223788999999986
Q ss_pred CC---ceeec---cHHHHHHHHhcCCceee-c-CCCcHHHHHHHHHHHHHH-------hcCcHHHHHHHHHHHHHHHhhc
Q 011567 321 EG---GFCTG---SARVVDHQRLSSSGYVF-S-ASLPPYLASAAITAIDVL-------EENPDLITKLKKNTAILRTGLS 385 (483)
Q Consensus 321 ~G---G~i~~---~~~~~~~~~~~~~~~~f-s-~~~~p~~~aaa~~al~~l-------~~~~~~~~~l~~~~~~l~~~L~ 385 (483)
.| ||+++ ++++++.++........ . .+.++..++++.++++.. ++..+++++++++.+++.+.|+
T Consensus 267 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 346 (418)
T 3rq1_A 267 YGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAA 346 (418)
T ss_dssp CSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 99988 88888877543211111 1 134666666666665322 1112456788888899999998
Q ss_pred cCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHH
Q 011567 386 DIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLV 465 (483)
Q Consensus 386 ~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~ 465 (483)
++ |+++..+..+.++++.+. + ..++++. |.++||.+.+.. ..+||++. .+|+++++
T Consensus 347 ~~-g~~~~~~~~~~~~~~~~~--------~---~~~~~~~-l~~~gi~v~~g~----------~~iRis~~-~~~~~~i~ 402 (418)
T 3rq1_A 347 QV-GLPMLPYRGGFFITIPTD--------S---ANAICEE-LKKEHIYVIALA----------NGIRIAAC-GIPKCQMT 402 (418)
T ss_dssp HH-TCCCCCCCSSSEEEEECT--------T---HHHHHHH-HHHTTEECEECS----------SEEEEEGG-GSCHHHHT
T ss_pred hc-CCCCCCCCceEEEEcCCC--------C---HHHHHHH-HHhCCEEEecCC----------CCeEEEEe-cCCHHHHH
Confidence 87 887765545555655542 1 2345654 556799998752 34999976 57999999
Q ss_pred HHHHHHHHHHHHH
Q 011567 466 KACESLKRISAVV 478 (483)
Q Consensus 466 ~~~~~l~~~~~~~ 478 (483)
+++++|+++++++
T Consensus 403 ~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 403 GLAEKIYNAMKSL 415 (418)
T ss_dssp THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 126
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.95 E-value=6e-27 Score=238.34 Aligned_cols=328 Identities=16% Similarity=0.178 Sum_probs=206.8
Q ss_pred CChHHHHHHHHHH-HhcCCCCCCCCCcccCh--H-HHHHHHHHHHhhhCCCCE-EEecccHHHHHhhhhhhccCCcEEEE
Q 011567 124 GHEKLLESCTSAL-EKYGVGSCGPRGFYGTI--D-VHLDCEARIAKFLGTPDS-ILYSYGLSTMFSAIPCFCKKGDLIVA 198 (483)
Q Consensus 124 ~~p~i~~a~~~~l-~~~g~g~~~~~~~~g~~--~-~~~~l~~~La~~~g~e~~-i~~~sG~~a~~~ai~~~~~~gdiI~~ 198 (483)
.+|.+.+++.+++ +.++.+.++++.+.+.. + .....++++++++|.+.. +++++|++|+..+++++.++||.|++
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~~~gd~v~~ 121 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLQPGDTVLG 121 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhcCCCCEEEe
Confidence 4799999999998 45655555554333322 2 333455889999998766 44799999999999999999999999
Q ss_pred cCCchhHHH-hHh--hhcCC--eEEEec-----CCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHH
Q 011567 199 DEGVHWGIQ-NGL--YLSRS--TVVYFK-----HNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELI 268 (483)
Q Consensus 199 ~~~~h~s~~-~g~--~~s~~--~v~~~~-----~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~ 268 (483)
+.++|.+.. .+. ...+. ..+.++ ..|+++|++.+++.. +++|++++.. .|...|+++|+
T Consensus 122 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~---------~~~v~~~~~~--~~~~~~l~~l~ 190 (420)
T 3gbx_A 122 MNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHK---------PKMIIGGFSA--YSGVVDWAKMR 190 (420)
T ss_dssp EEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHC---------CSEEEECCTT--CCSCCCHHHHH
T ss_pred cchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcC---------CeEEEEecCc--cCCccCHHHHH
Confidence 999987733 222 22222 333332 258999999886531 4566664322 25688999999
Q ss_pred HHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCCceeeccH---HHHHHHHhcCCceee
Q 011567 269 RLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEGGFCTGSA---RVVDHQRLSSSGYVF 344 (483)
Q Consensus 269 ~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~GG~i~~~~---~~~~~~~~~~~~~~f 344 (483)
++|++||+++|+||+|+.|..+. |. +.... ..+|++++|++|++ |+.|||+++++ ++.+.++....+..+
T Consensus 191 ~l~~~~~~~li~De~~~~~~~~~-~~----~~~~~-~~~di~~~s~sK~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 264 (420)
T 3gbx_A 191 EIADSIGAYLFVDMAHVAGLIAA-GV----YPNPV-PHAHVVTTTTHKTLAGPRGGLILAKGGDEELYKKLNSAVFPSAQ 264 (420)
T ss_dssp HHHHHTTCEEEEECTTTHHHHHT-TS----SCCST-TTSSEEEEESSGGGCSCSCEEEEESSCCHHHHHHHHHHHC----
T ss_pred HHHHHcCCEEEEECCcchhceec-cc----CCccc-ccCCEEEeecccCCCCCCceEEEEcCCcHHHHHHhhhhcCCCCC
Confidence 99999999999999998765432 21 11111 23689999999999 56789999987 777776554333333
Q ss_pred cCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecC-CCCCEEEEEecCCCCCchhhHHHHHHH
Q 011567 345 SASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASN-PESPIVFLILEKSTGSMKNDLQLLEDI 422 (483)
Q Consensus 345 s~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~-~~~~i~~l~l~~~~~~~~~~~~~~~~i 422 (483)
+...++..++++.+....+++ .+++.++++++.+++.+.|.+. |+++... ..++++++.+..... + ...+
T Consensus 265 ~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~----~---~~~~ 336 (420)
T 3gbx_A 265 GGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGTENHLFLLDLVDKNL----T---GKEA 336 (420)
T ss_dssp CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTC----C---HHHH
T ss_pred CCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCCCCeEEEEEcCCCCC----C---HHHH
Confidence 333333333333332232222 2467888999999999999884 8887643 467788887743211 1 1234
Q ss_pred HHHHHHhCCEEEEeeccccc-ccCCCCCceEEEccCC----CCHHHHHHHHHHHHHHHHH
Q 011567 423 ADWALKEDGVFVVTSKRSML-DKCRLPVGIRLFVSAA----HSEADLVKACESLKRISAV 477 (483)
Q Consensus 423 ~~~~l~~~Gv~v~~~~~~~~-~~~~~~~~lRi~~~~~----~t~edi~~~~~~l~~~~~~ 477 (483)
.+ .|+++||.+.+...+.. .....+.++||+++.. ++++|+++++++|++++++
T Consensus 337 ~~-~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 337 DA-ALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp HH-HHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred HH-HHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 44 45667999988433221 1111234599998654 5699999999999988754
No 127
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.95 E-value=2.4e-27 Score=242.56 Aligned_cols=335 Identities=12% Similarity=0.044 Sum_probs=235.8
Q ss_pred eeEEEeecCCC--CCCCCChHH--HHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh-----CC--CC---EEE
Q 011567 109 KEVVNFASANY--LGLIGHEKL--LESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-----GT--PD---SIL 174 (483)
Q Consensus 109 ~~~id~~s~~~--lG~~~~p~i--~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~-----g~--e~---~i~ 174 (483)
++++||+++.+ +|. +|.+ .+++.+++.+.+. ..|+......++++.+++++ +. ++ .++
T Consensus 47 ~~~i~l~~g~~~~~~~--~~~~~~~~a~~~~~~~~~~------~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~ 118 (430)
T 2x5f_A 47 STTYNATIGMATNKDG--KMFASSLDAMFNDLTPDEI------FPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIV 118 (430)
T ss_dssp TCSEECCCSSCEETTE--ECCCHHHHTTBSSCCGGGT------SSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEE
T ss_pred CCcEEeeeeeccCCCC--chhhHHHHHHHHhcCcccc------cccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEE
Confidence 45899999855 564 4556 6666665543111 12222223567888888888 64 35 566
Q ss_pred ecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhh-cCCeEEEecC------CCHHHHHHHHHHhhhhhhhccCccE
Q 011567 175 YSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYL-SRSTVVYFKH------NDMDSLRNTLERVTADNKRAKKLRR 247 (483)
Q Consensus 175 ~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~-s~~~v~~~~~------~d~~~Le~~l~~~~~~~~~~~~~~~ 247 (483)
+++|++|+..++++++++||.|+++.+.|.++...+.. .|.+++.++. .|+++|++.+++... +++
T Consensus 119 t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~-------~~~ 191 (430)
T 2x5f_A 119 TNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNK-------DKV 191 (430)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHCCS-------SEE
T ss_pred cCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhcCC-------CCE
Confidence 67888999999999999999999999999998888888 8988888764 267888888865321 256
Q ss_pred EEEEecccCCCCCccC---hHHHHHHHHH-----cCcEEEEeCccccccccCCC-Cccc-cccCCCCCce-eEEEccccc
Q 011567 248 YIVVEAVYQNSGQIAP---LDELIRLKEK-----YRFRVFLDESNSFGVLGRSG-RGLT-EHCGVPVDKI-DIVTAAMGH 316 (483)
Q Consensus 248 ~iv~e~v~~~~G~i~~---L~~l~~l~~k-----~~~~li~DEa~s~g~lg~~G-~g~~-~~~~v~~~~~-Di~~~s~~K 316 (483)
+|++..+++++|.+.| +++|+++|++ ||+++|+||+|+.+.++..+ ..+. ...+..++.+ +++++|++|
T Consensus 192 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 271 (430)
T 2x5f_A 192 IMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATK 271 (430)
T ss_dssp EEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHH
T ss_pred EEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEeccc
Confidence 6666666888999999 8999999999 99999999999876554211 1111 2212222112 677899999
Q ss_pred cccCCC---ceeec---cHHHHHHHHhcCCce--eecCCCcHHHHHHHHHHHH----HHhcCcHHHHHHHHHHHHHHHhh
Q 011567 317 ALATEG---GFCTG---SARVVDHQRLSSSGY--VFSASLPPYLASAAITAID----VLEENPDLITKLKKNTAILRTGL 384 (483)
Q Consensus 317 ~lg~~G---G~i~~---~~~~~~~~~~~~~~~--~fs~~~~p~~~aaa~~al~----~l~~~~~~~~~l~~~~~~l~~~L 384 (483)
++|..| ||+++ ++++++.++...... ....+.|++.++++.++++ +.++..+..++++++.+++.+.|
T Consensus 272 ~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L 351 (430)
T 2x5f_A 272 EFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVV 351 (430)
T ss_dssp HTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998666 99998 999888775432220 0122457888888888887 33333347888889999999999
Q ss_pred c----cCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCC
Q 011567 385 S----DIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHS 460 (483)
Q Consensus 385 ~----~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t 460 (483)
+ +. ++.+..+..+.++++.++ .. + ..++++.+++++||.+.++. +..+||+++. .+
T Consensus 352 ~~~~~~~-g~~~~~~~~g~~~~~~~~-~~-----~---~~~~~~~l~~~~gi~v~~g~---------~~~iRis~~~-~~ 411 (430)
T 2x5f_A 352 YADQYHS-HWQAYDFNSGYFMAIKVH-DV-----D---PEALRKHLIDKYSIGVIALN---------ATDIRIAFSC-VE 411 (430)
T ss_dssp TCGGGTT-TEEECCCCBSSEEEEEES-SS-----C---HHHHHHHHHHHHCEECEECS---------SSEEEEEGGG-SC
T ss_pred HhhCCCC-CceeeCCCceEEEEeCCC-CC-----C---HHHHHHHHHHhCCEEEecCC---------CCeEEEEEec-CC
Confidence 8 44 777765444556888875 11 1 23567766663599998751 2449999986 59
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011567 461 EADLVKACESLKRISAVV 478 (483)
Q Consensus 461 ~edi~~~~~~l~~~~~~~ 478 (483)
++++++++++|+++++++
T Consensus 412 ~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 412 KDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999998764
No 128
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.95 E-value=1.2e-25 Score=222.03 Aligned_cols=311 Identities=16% Similarity=0.137 Sum_probs=227.9
Q ss_pred CCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEe-cccHHHHH
Q 011567 107 SGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILY-SYGLSTMF 183 (483)
Q Consensus 107 ~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~-~sG~~a~~ 183 (483)
+.+++|||.++ |++|. +|.+.+++.+.++.+. .|. .+...++++++++++|.+ +.+++ +++++++.
T Consensus 14 ~~~~~i~l~~n~~~~~~--~~~v~~a~~~~~~~~~--------~y~-~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~ 82 (337)
T 3p1t_A 14 AAAQAVCLAFNENPEAV--EPRVQAAIAAAAARIN--------RYP-FDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFD 82 (337)
T ss_dssp CCCCCEECSSCCCCSCC--CHHHHHHHHHHGGGTT--------SCC-TTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHH
T ss_pred CCCCceEeeCCCCCCCC--CHHHHHHHHHhhhhhc--------cCC-CCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHH
Confidence 45679999999 88775 5899999998877532 222 246789999999999975 34555 55667888
Q ss_pred hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567 184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS 258 (483)
Q Consensus 184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~ 258 (483)
.++.++ +||.|+++.+.|.++...++..|.+++.++.+ |+++|++. . ++++|+++.+++++
T Consensus 83 ~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~-----~-------~~~~v~i~~p~npt 148 (337)
T 3p1t_A 83 RISAEF--SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQV-----S-------RDDCVVLANPSNPT 148 (337)
T ss_dssp HHHHHS--TTSEEEEESSSCSHHHHHHTTSCCEEEEECBCTTSSBCHHHHTTC-----C-------TTEEEEEESSCTTT
T ss_pred HHHHhc--CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHhh-----c-------CCCEEEEeCCCCCC
Confidence 888888 89999999999999999999999999888754 56665543 1 25788888889999
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHH
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQ 335 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~ 335 (483)
|.+.|++++.++|+++++ +|+||+|+.. +..+... ....+.+++++|+||++|..| ||+++++++++.+
T Consensus 149 G~~~~~~~l~~l~~~~~~-~ivDea~~~~--~~~~~~~-----~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l 220 (337)
T 3p1t_A 149 GQALSAGELDQLRQRAGK-LLIDETYVDY--SSFRARG-----LAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAM 220 (337)
T ss_dssp CCCCCHHHHHHHHHHCSE-EEEECTTGGG--SSCSSSC-----CCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHH
T ss_pred CCCCCHHHHHHHHHhCCc-EEEECCChhh--ccccccc-----cccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHH
Confidence 999999999999999997 5669999752 2212111 111345789999999998556 9999999999888
Q ss_pred HhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh
Q 011567 336 RLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND 415 (483)
Q Consensus 336 ~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~ 415 (483)
+..... .+.++...+++.++++......+.++++.++.+++.+.|+++ |+.+.. +.+.++++...+ .
T Consensus 221 ~~~~~~----~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~-------~ 287 (337)
T 3p1t_A 221 KRKQWF----CNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL-GYRVAS-SEANFVLVENAA-------G 287 (337)
T ss_dssp HTTSCT----TCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCC-CSSSEEEEECTT-------T
T ss_pred HhhcCC----CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-cCEECC-CCCeEEEEEcCC-------H
Confidence 654322 234666666666666543222346677788888999999887 777653 467777776532 1
Q ss_pred HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567 416 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 476 (483)
Q Consensus 416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~ 476 (483)
.++.+ .|+++||.+.++..+.. +..+|++++ +++|+++++++|+++.+
T Consensus 288 ----~~~~~-~l~~~gi~v~~g~~~~~-----~~~iRis~~---~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 288 ----ERTLR-FLRERGIQVKDAGQFGL-----HHHIRISIG---REEDNDRLLAALAEYSD 335 (337)
T ss_dssp ----HHHHH-HHHHTTEECEEGGGGTC-----CSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred ----HHHHH-HHHHCCeEEEECccCCC-----CCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence 13444 45567999998765432 345999985 79999999999987653
No 129
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.95 E-value=7.7e-26 Score=235.84 Aligned_cols=346 Identities=12% Similarity=0.066 Sum_probs=234.7
Q ss_pred ChHHHHHHHHHHHhcC-CCCCCCCCcccChHHHHHHHHHHHhhhC----CCCEEEecccHHHHHhhhhhhc-cCCcEEEE
Q 011567 125 HEKLLESCTSALEKYG-VGSCGPRGFYGTIDVHLDCEARIAKFLG----TPDSILYSYGLSTMFSAIPCFC-KKGDLIVA 198 (483)
Q Consensus 125 ~p~i~~a~~~~l~~~g-~g~~~~~~~~g~~~~~~~l~~~La~~~g----~e~~i~~~sG~~a~~~ai~~~~-~~gdiI~~ 198 (483)
++.+.+++.+.+.+++ .+..+.....|..++...+++.+.+..| .++.+++++|++++..++.++. ++||.|++
T Consensus 108 p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 187 (500)
T 3tcm_A 108 SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILV 187 (500)
T ss_dssp CHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEE
T ss_pred CHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEE
Confidence 4567788888888752 1333333344555555666666655544 3467777888999999999998 89999999
Q ss_pred cCCchhHHHhHhhhcCCeEEEec-------CCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---hHHHH
Q 011567 199 DEGVHWGIQNGLYLSRSTVVYFK-------HNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELI 268 (483)
Q Consensus 199 ~~~~h~s~~~g~~~s~~~v~~~~-------~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~ 268 (483)
+.+.|.++..++...|.+++.++ +.|+++|++.+++.... ..++++|++..++|++|.+.+ +++|+
T Consensus 188 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~----~~~~k~ivl~~p~NPtG~~~s~~~l~~i~ 263 (500)
T 3tcm_A 188 PIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSR----GINVRALVVINPGNPTGQVLAEENQYDIV 263 (500)
T ss_dssp EESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHT----TCEEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred eCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhc----CCCceEEEEECCCCCCcccCCHHHHHHHH
Confidence 99999999999999999988876 45899999998764321 112566666677889999988 67788
Q ss_pred HHHHHcCcEEEEeCccccccccCCCCccc-----cccCCCCCc-eeEEEccccccc-c---CCCceeec---cHHHHHHH
Q 011567 269 RLKEKYRFRVFLDESNSFGVLGRSGRGLT-----EHCGVPVDK-IDIVTAAMGHAL-A---TEGGFCTG---SARVVDHQ 335 (483)
Q Consensus 269 ~l~~k~~~~li~DEa~s~g~lg~~G~g~~-----~~~~v~~~~-~Di~~~s~~K~l-g---~~GG~i~~---~~~~~~~~ 335 (483)
++|++||+++|+||+|+.++++....... ..++...++ ..++++|+||++ | ..+||+++ ++++++.+
T Consensus 264 ~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 343 (500)
T 3tcm_A 264 KFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQI 343 (500)
T ss_dssp HHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHH
T ss_pred HHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHH
Confidence 88999999999999999877753222111 123221122 247788999999 4 44599877 88888876
Q ss_pred HhcCCceeecCCCcHHHHHHHHHHHH-----------HHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEE
Q 011567 336 RLSSSGYVFSASLPPYLASAAITAID-----------VLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLI 404 (483)
Q Consensus 336 ~~~~~~~~fs~~~~p~~~aaa~~al~-----------~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~ 404 (483)
+..... ....++...+++..+++ +.++.++++++++++++++.+.|++++|+.+..+..+.+.++.
T Consensus 344 ~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~ 420 (500)
T 3tcm_A 344 YKIASV---NLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQ 420 (500)
T ss_dssp HHHHHT---TCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEECCE
T ss_pred HHHHhc---ccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEEeee
Confidence 543211 12234555555555553 3333356788899999999999999889888765555566655
Q ss_pred ecCCCCCchh----hHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567 405 LEKSTGSMKN----DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 405 l~~~~~~~~~----~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~ 480 (483)
+..+....+. .......++.++|++.||++.++..+..... ...+|+++. ++++++++++++|+++++++.+
T Consensus 421 ~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g--~~~iRis~~--~~~e~i~~~i~~l~~~~~~~~~ 496 (500)
T 3tcm_A 421 ICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPG--TWHFRCTIL--PQEDKIPAVISRFTVFHEAFMS 496 (500)
T ss_dssp ECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTT--CCBEEEESC--SCTTTHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCC--CCEEEEEEC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 5322100000 0000122344567777999998765442111 234999998 8999999999999999988876
Q ss_pred c
Q 011567 481 D 481 (483)
Q Consensus 481 ~ 481 (483)
+
T Consensus 497 ~ 497 (500)
T 3tcm_A 497 E 497 (500)
T ss_dssp H
T ss_pred H
Confidence 5
No 130
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.95 E-value=2.6e-26 Score=227.92 Aligned_cols=311 Identities=14% Similarity=0.089 Sum_probs=224.7
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhhhhhccCCcEEEEcCC
Q 011567 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIPCFCKKGDLIVADEG 201 (483)
Q Consensus 124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~ 201 (483)
.+|.+.+++.+++... ..+...+...++++++++++|.+ +.++.++|++|+..+++++.++||.|++..+
T Consensus 12 ~~~~v~~a~~~~~~~~--------~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~ 83 (352)
T 1iug_A 12 LHPKALEALARPQLHH--------RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVY 83 (352)
T ss_dssp CCHHHHHHHHSCCCCT--------TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CCHHHHHHhccCCCCc--------cCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeC
Confidence 4688888877665421 11223456789999999999976 4555678899999999999999999999988
Q ss_pred chhHHH--hHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHc
Q 011567 202 VHWGIQ--NGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKY 274 (483)
Q Consensus 202 ~h~s~~--~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~ 274 (483)
.|.+.. ..+...|.+++.++.+ |+++|++ . ++++|+++++++++|.+.|+++|.++|++|
T Consensus 84 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~------~-------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~ 150 (352)
T 1iug_A 84 GKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAK------E-------GYAGLLLVHSETSTGALADLPALARAFKEK 150 (352)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSCC------S-------SCSEEEEESEETTTTEECCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHhc------c-------CCcEEEEEEecCCcceecCHHHHHHHHHhh
Confidence 888864 2334468888777653 4555543 1 256888899999999999999999999999
Q ss_pred --CcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCC-ceeeccHHHHHH---------HH----h
Q 011567 275 --RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDH---------QR----L 337 (483)
Q Consensus 275 --~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~---------~~----~ 337 (483)
|+++|+||+|++|... +++...++|++++|++|+++ +.| |+++.++++++. ++ .
T Consensus 151 ~~~~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (352)
T 1iug_A 151 NPEGLVGADMVTSLLVGE---------VALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKA 221 (352)
T ss_dssp CTTCEEEEECTTTBTTBC---------CCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHH
T ss_pred CCCCEEEEECCccccCcc---------eeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHHHHhh
Confidence 9999999999865432 11111135899999999664 445 888888887654 11 1
Q ss_pred cCCceeecCCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHhhccCCCceeecCC-CCCEEEEEecCCCCCchhh
Q 011567 338 SSSGYVFSASLPPYLASAAITAIDVLEEN-PDLITKLKKNTAILRTGLSDIHGLSIASNP-ESPIVFLILEKSTGSMKND 415 (483)
Q Consensus 338 ~~~~~~fs~~~~p~~~aaa~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~-~~~i~~l~l~~~~~~~~~~ 415 (483)
.... .+..+.++..++++.++++.+++. ++.+++++++.+++.+.|+++ |+++..+. .+.++++.++... +
T Consensus 222 ~~~~-~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-----~ 294 (352)
T 1iug_A 222 QKEG-ESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLPEGV-----P 294 (352)
T ss_dssp HTTT-CCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECCTTC-----C
T ss_pred cccC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccccccCCeEEEEEcCCCC-----C
Confidence 1111 233456777777777888876543 467888999999999999987 88876543 5678888874211 1
Q ss_pred HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567 416 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~ 480 (483)
..++.+.+. ++||.+.+...+. .+..+|++++..+|++|+++++++|++++++++.
T Consensus 295 ---~~~~~~~l~-~~gi~v~~~~~~~-----~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 350 (352)
T 1iug_A 295 ---YARVKEAFA-QRGAVIAGGQGPL-----KGKVFRLSLMGAYDRYEALGVAGMFREVLEEILP 350 (352)
T ss_dssp ---HHHHHHHHH-TTTEECEECCGGG-----TTTEEEECCCSSCCHHHHHHHHHHHHHHHHHHC-
T ss_pred ---HHHHHHHHH-HCCEEEEeCCCcc-----CCCEEEEEccccCCHHHHHHHHHHHHHHHHHhcC
Confidence 235666655 4599998765321 1245999999989999999999999999987753
No 131
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.95 E-value=1.4e-26 Score=234.71 Aligned_cols=336 Identities=15% Similarity=0.170 Sum_probs=234.2
Q ss_pred eeEEEeecC-CCCCCCCChHHHHHHHHHHHh-cCCCCCCCCCcccChHHHHHHH----HHHHhhhCCCCE-EEecccHHH
Q 011567 109 KEVVNFASA-NYLGLIGHEKLLESCTSALEK-YGVGSCGPRGFYGTIDVHLDCE----ARIAKFLGTPDS-ILYSYGLST 181 (483)
Q Consensus 109 ~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~-~g~g~~~~~~~~g~~~~~~~l~----~~La~~~g~e~~-i~~~sG~~a 181 (483)
++++|+.++ +++ +|.+.+++.+++.+ +..+.+.++...|.. .+..++ +++++++|.+.. +++++|++|
T Consensus 23 ~~~i~~~~~~~~~----~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~-~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a 97 (407)
T 2dkj_A 23 REGLELIASENFV----SKQVREAVGSVLTNKYAEGYPGARYYGGCE-VIDRVESLAIERAKALFGAAWANVQPHSGSQA 97 (407)
T ss_dssp HTSEECCTTCCCC----CHHHHHHHTSGGGGCCCCEETTEESSSCCH-HHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred hcceeeccCCCCC----CHHHHHHHHhhhhcCcccCCCcccccCCch-HHHHHHHHHHHHHHHHhCCCcceEEecchHHH
Confidence 367898887 555 79999999999875 444444443333443 223333 599999998766 556899999
Q ss_pred HHhhhhhhccCCcEEEEcCCchhHHH---hHhhhcCC--eEEEec------CCCHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567 182 MFSAIPCFCKKGDLIVADEGVHWGIQ---NGLYLSRS--TVVYFK------HNDMDSLRNTLERVTADNKRAKKLRRYIV 250 (483)
Q Consensus 182 ~~~ai~~~~~~gdiI~~~~~~h~s~~---~g~~~s~~--~v~~~~------~~d~~~Le~~l~~~~~~~~~~~~~~~~iv 250 (483)
+..+++++.++||.|++..+.|.++. ..+...|. ..+.++ ..|+++|++.+++. ++++|+
T Consensus 98 ~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---------~~~~v~ 168 (407)
T 2dkj_A 98 NMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEH---------RPKVIV 168 (407)
T ss_dssp HHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHH---------CCSEEE
T ss_pred HHHHHHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhc---------CCeEEE
Confidence 99999999999999999999987763 34444444 344442 24788898888642 145555
Q ss_pred E-ecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeecc
Q 011567 251 V-EAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGS 328 (483)
Q Consensus 251 ~-e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~ 328 (483)
+ +|.+ |.+.|+++|+++|++||+++|+||+|+.|..+. |... .. . ..+|++++|++|+++ +.|||++++
T Consensus 169 ~~~p~~---~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~-~~~~-~~--~--~~~di~~~s~sK~l~g~~~G~~~~~ 239 (407)
T 2dkj_A 169 AGASAY---PRFWDFKAFREIADEVGAYLVVDMAHFAGLVAA-GLHP-NP--L--PYAHVVTSTTHKTLRGPRGGLILSN 239 (407)
T ss_dssp ECCSSC---CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHT-TCSC-CC--T--TTCSEEEEESSGGGCCCSCEEEEES
T ss_pred Eecccc---CCCCCHHHHHHHHHHcCCEEEEEcccccccccc-CccC-Cc--c--ccccEEEEeccccCCCCCceEEEEC
Confidence 5 4544 577889999999999999999999999865432 2111 11 1 125999999999995 678999998
Q ss_pred -HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeec-CCCCCEEEEE
Q 011567 329 -ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIAS-NPESPIVFLI 404 (483)
Q Consensus 329 -~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~-~~~~~i~~l~ 404 (483)
+++++.++.....+..+ +.++..++++.++++.+.. .+++.++++++.+++.+.|+++ |+++.. +..++++++.
T Consensus 240 ~~~~~~~l~~~~~~~~~~-~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~ 317 (407)
T 2dkj_A 240 DPELGKRIDKLIFPGIQG-GPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGGTDNHLFLVD 317 (407)
T ss_dssp CHHHHHHHHHHHTTTTCS-SCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEE
T ss_pred CHHHHHHHHhhhcccccC-CCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-CceeecCCCCceEEEEE
Confidence 78888776543333222 3466666677778877532 2568889999999999999987 888764 3468888888
Q ss_pred ecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc-cCCCCCceEEEccC----CCCHHHHHHHHHHHHHHHHH
Q 011567 405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD-KCRLPVGIRLFVSA----AHSEADLVKACESLKRISAV 477 (483)
Q Consensus 405 l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~-~~~~~~~lRi~~~~----~~t~edi~~~~~~l~~~~~~ 477 (483)
++.... + ..++.+. |.++||.+.+...+... ....+..+|++++. .+|++|+++++++|++++++
T Consensus 318 ~~~~~~----~---~~~~~~~-l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 318 LRPKGL----T---GKEAEER-LDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp CGGGTC----C---HHHHHHH-HHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred CcccCC----C---HHHHHHH-HHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 753110 1 2345665 45679999876532100 00113459999875 38999999999999999877
No 132
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.95 E-value=1.4e-26 Score=234.68 Aligned_cols=290 Identities=12% Similarity=0.124 Sum_probs=211.4
Q ss_pred ChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHH
Q 011567 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDS 227 (483)
Q Consensus 152 ~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~ 227 (483)
..+...++++++++++|.++.+++++|++|+..+++++.++||.|+++.+.|.++...+ ...|.+++.++.+|+++
T Consensus 62 ~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~ 141 (398)
T 2rfv_A 62 GNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEE 141 (398)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHH
T ss_pred CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCCCHHH
Confidence 45788999999999999999999999999999999999999999999999999887776 67789999999889888
Q ss_pred HHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCce
Q 011567 228 LRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI 307 (483)
Q Consensus 228 Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~ 307 (483)
|++.+++ ++++|+++++++++|.+.|+++|+++|++||+++|+||+|+.+.++. .. .+ ++
T Consensus 142 l~~~i~~----------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~---~~--~~-----~~ 201 (398)
T 2rfv_A 142 IRAAMRP----------ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQ---PL--QL-----GA 201 (398)
T ss_dssp HHHHCCT----------TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC---GG--GG-----TC
T ss_pred HHHhcCC----------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC---ch--hh-----CC
Confidence 8877643 26889999999999999999999999999999999999999776532 11 12 24
Q ss_pred eEEEccccccccCC----CceeeccHHHHH-HHHhcCCceee-cCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 011567 308 DIVTAAMGHALATE----GGFCTGSARVVD-HQRLSSSGYVF-SASLPPYLASAAITAIDVLEENPDLITKLKKNTAILR 381 (483)
Q Consensus 308 Di~~~s~~K~lg~~----GG~i~~~~~~~~-~~~~~~~~~~f-s~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~ 381 (483)
|+++.|++|+++.. ||++++++++++ .++... ..+ +.+.+|..++++.++++.+. ...+++.++.+.+.
T Consensus 202 di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~l~ 276 (398)
T 2rfv_A 202 DIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGL--KDITGGCMSPFNAWLTLRGVKTLG---IRMERHCENALKIA 276 (398)
T ss_dssp SEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHH--HHTTCCCCCHHHHHHHHHHHTTHH---HHHHHHHHHHHHHH
T ss_pred cEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHH--HhCCCCCCCHHHHHHHHhhhhhHH---HHHHHHHHHHHHHH
Confidence 89999999999643 589999988876 444321 122 34568888888888876542 34556666777777
Q ss_pred HhhccC--------------CCceeec---CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccc---
Q 011567 382 TGLSDI--------------HGLSIAS---NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSM--- 441 (483)
Q Consensus 382 ~~L~~~--------------~~~~i~~---~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~--- 441 (483)
+.|.+. +++.+.. ...++++.+.++. ......++.+. +...|+.+..+...+
T Consensus 277 ~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~-------~~~~~~~l~~~-~~~~~i~~~~G~~~~li~ 348 (398)
T 2rfv_A 277 RFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG-------GLEAGRRMINS-VELCLLAVSLGDTETLIQ 348 (398)
T ss_dssp HHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT-------HHHHHHHHHTT-CSSSEECSCCSSSSCEEE
T ss_pred HHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC-------CHHHHHHHHHh-CCcceeccCCCCcceeee
Confidence 776653 2233222 1357888888742 11223333333 222366655442210
Q ss_pred ---c------c-----c-CCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567 442 ---L------D-----K-CRLPVGIRLFVSAAHSEADLVKACESLKRI 474 (483)
Q Consensus 442 ---~------~-----~-~~~~~~lRi~~~~~~t~edi~~~~~~l~~~ 474 (483)
. + . ...++.||++++..+++++++++.++|+++
T Consensus 349 ~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 349 HPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp CHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 0 0 0 011345999999999999999999988764
No 133
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.95 E-value=5.6e-26 Score=231.56 Aligned_cols=339 Identities=16% Similarity=0.210 Sum_probs=213.4
Q ss_pred eEEEeecC-CCCCCCCChHHHHHHHHHH-HhcCCCCCCCCCcccCh--HHHHHHH-HHHHhhhCCCCEEE-ecccHHHHH
Q 011567 110 EVVNFASA-NYLGLIGHEKLLESCTSAL-EKYGVGSCGPRGFYGTI--DVHLDCE-ARIAKFLGTPDSIL-YSYGLSTMF 183 (483)
Q Consensus 110 ~~id~~s~-~~lG~~~~p~i~~a~~~~l-~~~g~g~~~~~~~~g~~--~~~~~l~-~~La~~~g~e~~i~-~~sG~~a~~ 183 (483)
+.+++.++ |++ +|++.+++.+++ +.|+.+.++++.+.+.. +...+++ +.+++++|.+...+ +++|++|+.
T Consensus 33 ~~i~l~~~~~~~----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~ 108 (425)
T 3ecd_A 33 SQVELIASENIV----SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQPHSGAQANG 108 (425)
T ss_dssp HSEECCTTCCCC----CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEECCCSSHHHHHH
T ss_pred cceeeecccCCC----CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeecCchHHHHH
Confidence 35677665 553 799999999998 45665555554333332 2445554 78999999988754 799999999
Q ss_pred hhhhhhccCCcEEEEcCCchhH-HHhHhh--hcCC--eEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567 184 SAIPCFCKKGDLIVADEGVHWG-IQNGLY--LSRS--TVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVE 252 (483)
Q Consensus 184 ~ai~~~~~~gdiI~~~~~~h~s-~~~g~~--~s~~--~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e 252 (483)
.+++++.++||.|++..+.|.+ ...+.. ..+. ..+.++.+ |+++|++.+++. ++++|+++
T Consensus 109 ~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~---------~~~~v~~~ 179 (425)
T 3ecd_A 109 AVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQH---------KPSLIIAG 179 (425)
T ss_dssp HHHHHHCCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHH---------CCSEEEEE
T ss_pred HHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhc---------CCcEEEEc
Confidence 9999999999999999998877 323332 3343 44455543 888999888642 14566666
Q ss_pred cccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeecc-HH
Q 011567 253 AVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGS-AR 330 (483)
Q Consensus 253 ~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~-~~ 330 (483)
+..+ |...++++|+++|++||+++|+||+|+.|.... |.. ++.. ..+|++++|++|+++ +.|||++++ ++
T Consensus 180 ~~~~--~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~-~~~----~~~~-~~~di~~~s~sK~l~g~~~g~~~~~~~~ 251 (425)
T 3ecd_A 180 FSAY--PRKLDFARFRAIADSVGAKLMVDMAHIAGVIAA-GRH----ANPV-EHAHVVTSTTHKTLRGPRGGFVLTNDEE 251 (425)
T ss_dssp CSCC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHT-TSS----CCGG-GTCSEEEEESSGGGCCCSCEEEEESCHH
T ss_pred cccC--CCcCCHHHHHHHHHHcCCEEEEECcChHhhhhc-ccc----cCch-hcCcEEEecCCcccCCCCcEEEEeCCHH
Confidence 4332 778889999999999999999999987765432 221 1111 125899999999994 568999887 56
Q ss_pred HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhhccCCCceeecC-CCCCEEEEEecCC
Q 011567 331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRTGLSDIHGLSIASN-PESPIVFLILEKS 408 (483)
Q Consensus 331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~-~~~~i~~l~l~~~ 408 (483)
+.+.++........+...++..++++.+..+..++ .+++.++++++.+++++.|.+. |+++..+ ..++++++.+...
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~ 330 (425)
T 3ecd_A 252 IAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGTDNHLLLVDLRPK 330 (425)
T ss_dssp HHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGG
T ss_pred HHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCCCceEEEEEeCCC
Confidence 76666543222222233334444433333333322 2467888999999999999884 8877643 4677888877432
Q ss_pred CCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc-cCCCCCceEEE----ccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD-KCRLPVGIRLF----VSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 409 ~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~-~~~~~~~lRi~----~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
.. + ...+.+ .|+++||.+.+...+... ....+.++|++ .+..++++++++++++|++++++.
T Consensus 331 ~~----~---~~~~~~-~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 331 GL----K---GAQVEQ-ALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp TC----C---HHHHHH-HHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CC----C---HHHHHH-HHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 10 1 123444 456679999865433211 01113469999 455567999999999999998775
No 134
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.95 E-value=4.9e-26 Score=238.34 Aligned_cols=340 Identities=15% Similarity=0.132 Sum_probs=237.6
Q ss_pred EEEeecCCCCCCC--CChHHHHHHHHHHHhcCC-CCCCCCCcccChHHHHHHHHHHHhhhCCC----CE--EEecccHHH
Q 011567 111 VVNFASANYLGLI--GHEKLLESCTSALEKYGV-GSCGPRGFYGTIDVHLDCEARIAKFLGTP----DS--ILYSYGLST 181 (483)
Q Consensus 111 ~id~~s~~~lG~~--~~p~i~~a~~~~l~~~g~-g~~~~~~~~g~~~~~~~l~~~La~~~g~e----~~--i~~~sG~~a 181 (483)
.+++.+++++|+. .++.+.+++.+++..+.. +...+..+.+......++++++++++|.+ .. +++++|++|
T Consensus 93 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a 172 (514)
T 3mad_A 93 SPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTES 172 (514)
T ss_dssp HHHHHTTCBSSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHH
T ss_pred CCCCCCCceEEEecCCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHH
Confidence 3556667778843 568888888888775432 12222223334456677888889999976 44 777999999
Q ss_pred HHhhhhhhccCC--------cEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEE
Q 011567 182 MFSAIPCFCKKG--------DLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRY 248 (483)
Q Consensus 182 ~~~ai~~~~~~g--------diI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~ 248 (483)
+..+++++.+++ |.|+++.+.|.++.++++..|.+++.++.+ |+++|++.+++ ++++
T Consensus 173 ~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~----------~~~~ 242 (514)
T 3mad_A 173 LLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITP----------NTVV 242 (514)
T ss_dssp HHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHHHHTCEEEEECBCTTSCBCHHHHHHHCCT----------TEEE
T ss_pred HHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHHHcCCeeEEeeeCCCCCCCHHHHHHHhcc----------CCEE
Confidence 999999987665 899999999999999999999999998876 78888887743 2688
Q ss_pred EEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccc---cCCCCccccccCCCCCceeEEEcccccccc-CC-Cc
Q 011567 249 IVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVL---GRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TE-GG 323 (483)
Q Consensus 249 iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~l---g~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~-GG 323 (483)
|+++++++++|.+.|+++|+++|++||+++|+||+|+.+++ +..|.... .+.....++|++++|++|+++ +. .|
T Consensus 243 v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~-~~~~~~~g~d~~~~s~~K~l~~~~~~g 321 (514)
T 3mad_A 243 VAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVP-PFDFRLEGVTSVSADTHKYGYGAKGTS 321 (514)
T ss_dssp EEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCC-CCSTTSTTCCEEEECTTTTTCCCSSCE
T ss_pred EEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCC-cccccCCCCcEEEECchhccCCCCCeE
Confidence 89999999999999999999999999999999999987764 33333111 122223456999999999964 33 36
Q ss_pred eeeccHHHHHHHHh-cCC--------ceeecCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCcee
Q 011567 324 FCTGSARVVDHQRL-SSS--------GYVFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSI 392 (483)
Q Consensus 324 ~i~~~~~~~~~~~~-~~~--------~~~fs~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i 392 (483)
+++.+++....... ... .+.+.++.+....+++.++++.+.. .+++.+++.++++++.+.|++++++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 401 (514)
T 3mad_A 322 VILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKI 401 (514)
T ss_dssp EEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEE
T ss_pred EEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence 66555554433211 000 0112223344444445555655533 246888999999999999999888888
Q ss_pred ecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccC-CCCHHHHHHHHHHH
Q 011567 393 ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSA-AHSEADLVKACESL 471 (483)
Q Consensus 393 ~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~-~~t~edi~~~~~~l 471 (483)
..++ ..++.+..... + ..++.+.++ ++||.+....+ ++.+|++++. ..+++++++++++|
T Consensus 402 ~~~~-~~~~~~~~~~~------~---~~~l~~~L~-~~Gi~v~g~~~--------~~~~Ri~~~~~~~~~e~i~~~l~~L 462 (514)
T 3mad_A 402 LGDP-LWVIAVASDEL------N---IYQVMEEMA-GRGWRLNGLHR--------PPAFHVALTLRHTEPGVVDRFLADL 462 (514)
T ss_dssp SSCC-SSEEEEECSSS------C---HHHHHHHHH-TTTCBCEEETT--------TTEEEEECCGGGGSTTHHHHHHHHH
T ss_pred eCCC-eEEEEEeCCCC------C---HHHHHHHHH-hcCCEeccCCC--------CCeEEEEEecCCCCHHHHHHHHHHH
Confidence 7553 45666654211 1 235677655 45998843322 3559999874 45679999999999
Q ss_pred HHHHHHHHh
Q 011567 472 KRISAVVLR 480 (483)
Q Consensus 472 ~~~~~~~~~ 480 (483)
+++++++..
T Consensus 463 ~~~l~~~~~ 471 (514)
T 3mad_A 463 QDAVAQVRA 471 (514)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988754
No 135
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.95 E-value=2.5e-26 Score=232.75 Aligned_cols=341 Identities=12% Similarity=0.128 Sum_probs=226.7
Q ss_pred CeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhh--hC-C-C-CEEEecccHHHH
Q 011567 108 GKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF--LG-T-P-DSILYSYGLSTM 182 (483)
Q Consensus 108 G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~--~g-~-e-~~i~~~sG~~a~ 182 (483)
|+++|||.++.+ ++..+|.+.+++.+++++.+... ....|+......++++.++++ .| . + +.++.+++++++
T Consensus 32 ~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~~--~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al 108 (400)
T 3asa_A 32 QHTVINLSIGDT-TQPLNASVAEAFASSIARLSSPT--TCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL 108 (400)
T ss_dssp TSCCEECSSCCC-CCCCCHHHHHHHHHHHHHHTSSS--CCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred CCceEeccCCCC-CCCCCHHHHHHHHHHHhcccccc--cccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence 567899988854 34467999999999998753211 011233333457899999999 46 2 3 444556667787
Q ss_pred HhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCe-EEEecCCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc
Q 011567 183 FSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRST-VVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI 261 (483)
Q Consensus 183 ~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~-v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i 261 (483)
..++.. .++||.|+++.+.|.++...+...|.+ ++.++.++-..+...+++. .++++|+++++++++|.+
T Consensus 109 ~~~~~~-~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~--------~~~~~v~l~~p~nptG~~ 179 (400)
T 3asa_A 109 FRLLSF-FGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPED--------THIDILCLCSPNNPTGTV 179 (400)
T ss_dssp HHHHHH-HCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCCTT--------CCCSEEEEESSCTTTCCC
T ss_pred HHHHHH-cCCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccChhhc--------cCccEEEEeCCCCCCCCc
Confidence 776544 478899999989888888888888888 8887764211111001110 125666666788999999
Q ss_pred cC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCC-CceeEEEccccccccCCC---ceeeccHHH---
Q 011567 262 AP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV-DKIDIVTAAMGHALATEG---GFCTGSARV--- 331 (483)
Q Consensus 262 ~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~-~~~Di~~~s~~K~lg~~G---G~i~~~~~~--- 331 (483)
.| +++|+++|++||+++|+||+|+.+..+ |........++. .+.+++++|+||++|..| ||+++++++
T Consensus 180 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~ 257 (400)
T 3asa_A 180 LNKDQLRAIVHYAIEHEILILFDAAYSTFISD--PSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYA 257 (400)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTGGGCCC--TTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBCT
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEchhhhhhcC--CCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhccc
Confidence 88 678999999999999999999854332 221112222221 234688899999998666 999888887
Q ss_pred ----HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEE-ec
Q 011567 332 ----VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLI-LE 406 (483)
Q Consensus 332 ----~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~-l~ 406 (483)
++.+........|+ +.++...+++.++++.. ..++++++++++.+++.+.|++. |+++..+..++++++. ++
T Consensus 258 ~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~ 334 (400)
T 3asa_A 258 DGHFVIQDWERFLSTTFN-GASIPAQEAGVAGLSIL-PQLEAIHYYRENSDLLRKALLAT-GFEVFGGEHAPYLWVKPTQ 334 (400)
T ss_dssp TSCBHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHT-TCEEEECSSSSEEEEECCC
T ss_pred hhhhHHHHHHHHhccCcc-CCChHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCceEEEEeccC
Confidence 55443221122232 34677777777777754 34578899999999999999887 8887755567888888 64
Q ss_pred CCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
.... ..+++..+++++||.+.++..+... .+..+||++ ..|++++++++++|++++++.
T Consensus 335 ~~~~--------~~~~~~~l~~~~gv~v~~g~~f~~~---~~~~iRis~--~~~~e~i~~~l~~l~~~~~~~ 393 (400)
T 3asa_A 335 ANIS--------DRDLFDFFLREYHIAITPGIGFGRS---GSGFVRFSS--LGKREDILAACERLQMAPALQ 393 (400)
T ss_dssp TTCC--------TTTHHHHHHHHHSEECEEGGGGCGG---GTTCEEEEC--CSCHHHHHHHHHHHHC-----
T ss_pred CCCC--------HHHHHHHHHHhCCEEEeChhHhCCC---CCCEEEEEe--eCCHHHHHHHHHHHHHHHHhh
Confidence 2111 1135666666669999886543210 023499984 579999999999999988654
No 136
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.95 E-value=3.3e-27 Score=238.83 Aligned_cols=335 Identities=14% Similarity=0.124 Sum_probs=212.2
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhc-CCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHH
Q 011567 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKY-GVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMF 183 (483)
Q Consensus 107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~-g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~ 183 (483)
++.-|+|++++. . .+|.+.+++.+++++. +.........++..+...++++++++++|.+ ..++.++|++|+.
T Consensus 19 ~~~iyld~~~~~---~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~ 94 (400)
T 3vax_A 19 SHMTYLDAAATT---R-VDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNN 94 (400)
T ss_dssp ---CCCCCCCCS---S-SCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHH
T ss_pred CCcEEecCCCCC---C-CCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHH
Confidence 455688887753 2 5799999999998763 2211111111123456789999999999975 5666688889999
Q ss_pred hhhhhhc----cCCc-EEEEcCCchhHHHhHhhh---cCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567 184 SAIPCFC----KKGD-LIVADEGVHWGIQNGLYL---SRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIV 250 (483)
Q Consensus 184 ~ai~~~~----~~gd-iI~~~~~~h~s~~~g~~~---s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv 250 (483)
.+++++. ++|| .|+++...|.++...+.. .|.+++.++.+ |+++|++.+++ ++++|+
T Consensus 95 ~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----------~~~~v~ 164 (400)
T 3vax_A 95 IALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLRP----------DTLLVS 164 (400)
T ss_dssp HHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCCT----------TEEEEE
T ss_pred HHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcCC----------CceEEE
Confidence 9999997 8999 999999999887665543 58888888765 67777766532 378999
Q ss_pred EecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceee-cc
Q 011567 251 VEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCT-GS 328 (483)
Q Consensus 251 ~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~-~~ 328 (483)
++++++++|.+.|+++|.++|++||+++|+||+|++|... .++... +|++++|++|.+|+.| |+++ .+
T Consensus 165 ~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~---------~~~~~~-~d~~~~s~~K~~g~~g~g~~~~~~ 234 (400)
T 3vax_A 165 LMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVP---------GDLTTP-IDMISISGHKIGAPKGVGALVTRR 234 (400)
T ss_dssp CCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSG---------GGGGSC-CSEEEEETGGGTSCSSCEEEEECB
T ss_pred EECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCC---------cChhhc-CcEEEEeHHHhCCCCceEEEEEec
Confidence 9999999999999999999999999999999999875432 111112 4899999999877654 6666 55
Q ss_pred H-HHH---HHHHhcC----Cceee-cCCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHhhccCCCceeecCCC-
Q 011567 329 A-RVV---DHQRLSS----SGYVF-SASLPPYLASAAITAIDVLEEN-PDLITKLKKNTAILRTGLSDIHGLSIASNPE- 397 (483)
Q Consensus 329 ~-~~~---~~~~~~~----~~~~f-s~~~~p~~~aaa~~al~~l~~~-~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~- 397 (483)
+ ++. ..++... ....+ ..+.++..++++.++++.+.+. ++..++++++.+++.+.|+ .+++.+..+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~ 313 (400)
T 3vax_A 235 REEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDH 313 (400)
T ss_dssp CSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTS
T ss_pred chhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCccc
Confidence 4 111 1111110 00111 2345677777777788876543 5688899999999999998 77888775433
Q ss_pred --CCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc---------cCCC-----CCceEEEc-cCCCC
Q 011567 398 --SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD---------KCRL-----PVGIRLFV-SAAHS 460 (483)
Q Consensus 398 --~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~---------~~~~-----~~~lRi~~-~~~~t 460 (483)
..++.+.+... + ..++.+.+. +||.+.++..+... .... +..+||++ +..+|
T Consensus 314 ~~~~~~~~~~~~~------~---~~~l~~~L~--~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t 382 (400)
T 3vax_A 314 VVPHILNLSFEDV------D---AEAFLVTLK--DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQAT 382 (400)
T ss_dssp BCTTEEEEECTTC------C---HHHHHHHHH--HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC---
T ss_pred CCCCEEEEEeCCC------C---HHHHHHHHh--cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCC
Confidence 35777776421 1 224555544 47766543211100 0000 24599999 99999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011567 461 EADLVKACESLKRISAV 477 (483)
Q Consensus 461 ~edi~~~~~~l~~~~~~ 477 (483)
++|+++++++|++++++
T Consensus 383 ~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 383 DLDVEELARGVAKLKPS 399 (400)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999988753
No 137
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.95 E-value=3.8e-26 Score=234.95 Aligned_cols=338 Identities=16% Similarity=0.200 Sum_probs=226.4
Q ss_pred eEEEeecC-CCCCCCCChHHHHHHHHHHH-hcCCCCCCCCCcccChHHH--HHHH-HHHHhhhCCCCEEE-ecccHHHHH
Q 011567 110 EVVNFASA-NYLGLIGHEKLLESCTSALE-KYGVGSCGPRGFYGTIDVH--LDCE-ARIAKFLGTPDSIL-YSYGLSTMF 183 (483)
Q Consensus 110 ~~id~~s~-~~lG~~~~p~i~~a~~~~l~-~~g~g~~~~~~~~g~~~~~--~~l~-~~La~~~g~e~~i~-~~sG~~a~~ 183 (483)
+.|++.++ |+ .+|++.+++.+++. .|+.+.++++.+.|+.... .+++ +++++++|.+.+.+ ++||++|+.
T Consensus 46 ~~i~l~~~~~~----~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~ 121 (447)
T 3h7f_A 46 DTLEMIASENF----VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANA 121 (447)
T ss_dssp HSEECCTTCCC----CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHH
T ss_pred CceeEecCCCC----CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEEeCCHHHHHH
Confidence 45777665 44 37999999999885 6766666666555554433 5566 99999999988777 799999999
Q ss_pred hhhhhhccCCcEEEEcCCchhH-HHhHh--hhc--CCeEEEec------CCCHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567 184 SAIPCFCKKGDLIVADEGVHWG-IQNGL--YLS--RSTVVYFK------HNDMDSLRNTLERVTADNKRAKKLRRYIVVE 252 (483)
Q Consensus 184 ~ai~~~~~~gdiI~~~~~~h~s-~~~g~--~~s--~~~v~~~~------~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e 252 (483)
.++.++.++||.|++..+.|.+ +..+. ... +..++.++ +.|+++|++.+++.. +++|++.
T Consensus 122 ~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~---------~~~i~~~ 192 (447)
T 3h7f_A 122 AVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFR---------PKVIIAG 192 (447)
T ss_dssp HHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHC---------CSEEEEE
T ss_pred HHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcC---------CeEEEEc
Confidence 9999999999999999988866 32222 222 23444444 248899998886532 3466664
Q ss_pred cccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeeccHHH
Q 011567 253 AVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSARV 331 (483)
Q Consensus 253 ~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~~~~ 331 (483)
...++++. ++++|+++|++||+++|+||+|+.|... .|. +.+.. ..+|+++.|++|+++ +.|||+++++++
T Consensus 193 ~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~-~g~----~~~~~-~~~di~~~s~sK~l~G~~gG~i~~~~~~ 264 (447)
T 3h7f_A 193 WSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVA-AGL----HPSPV-PHADVVSTTVHKTLGGGRSGLIVGKQQY 264 (447)
T ss_dssp CSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHH-TTS----SCCST-TTCSEEEEESSGGGCCCSCEEEEECGGG
T ss_pred CCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhc-CCC----CCCCC-CCCcEEEecCCcCCCCCCeEEEEECHHH
Confidence 33333333 9999999999999999999998766432 122 11211 345899999999996 678999999998
Q ss_pred HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccC----CCceeec-CCCCCEEEEE
Q 011567 332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDI----HGLSIAS-NPESPIVFLI 404 (483)
Q Consensus 332 ~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~----~~~~i~~-~~~~~i~~l~ 404 (483)
++.++....++.+++..++.. +++.+++..+.+ .++..+++.++.+++.+.|.+. +|+++.. ...++++++.
T Consensus 265 ~~~l~~~~~~~~~~~~~~~~~-~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~ 343 (447)
T 3h7f_A 265 AKAINSAVFPGQQGGPLMHVI-AGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVD 343 (447)
T ss_dssp HHHHHHHHTTTTCSSCCHHHH-HHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEE
T ss_pred HHHHhhhcCCcccCCccHHHH-HHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEE
Confidence 887765544444444433333 333344544322 2457888999999999999875 4777754 2356777777
Q ss_pred ecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc-ccCCCCCceEEEccCC----CCHHHHHHHHHHHHHHHHH
Q 011567 405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML-DKCRLPVGIRLFVSAA----HSEADLVKACESLKRISAV 477 (483)
Q Consensus 405 l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~-~~~~~~~~lRi~~~~~----~t~edi~~~~~~l~~~~~~ 477 (483)
+..... +. +.+..+|++.||.+.....+.. .....+.++|++++.. +|++|+++++++|++++.+
T Consensus 344 ~~~~~~----~~----~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 344 LRDSPL----DG----QAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALAT 413 (447)
T ss_dssp CTTSSC----CH----HHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred cCCCCC----CH----HHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 743211 11 2344467777999873211110 0001245699987654 7899999999999998754
No 138
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.95 E-value=1.5e-26 Score=238.52 Aligned_cols=335 Identities=15% Similarity=0.127 Sum_probs=210.3
Q ss_pred EEEeec-CCCCCCCCChHHHHHHHHHH-HhcCCCCCCCCCcccChHHHHHHH----HHHHhhhCCCC----EEEe-cccH
Q 011567 111 VVNFAS-ANYLGLIGHEKLLESCTSAL-EKYGVGSCGPRGFYGTIDVHLDCE----ARIAKFLGTPD----SILY-SYGL 179 (483)
Q Consensus 111 ~id~~s-~~~lG~~~~p~i~~a~~~~l-~~~g~g~~~~~~~~g~~~~~~~l~----~~La~~~g~e~----~i~~-~sG~ 179 (483)
.|++.. .|| .+|.|.+|+...+ .+|+.|++++|.+.|+ +...++| +++++++|.+. +.++ +||+
T Consensus 56 ~i~lias~n~----~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~-~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt 130 (490)
T 2a7v_A 56 GLELIASENF----CSRAALEALGSCLNNKYSEGYPGKRYYGGA-EVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGS 130 (490)
T ss_dssp SEECCTTCCC----CCHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH
T ss_pred CceEECCCCC----CCHHHHHHHHHHHcCCCccCCCcccccCcc-HHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchH
Confidence 445544 466 4799999998887 4588888888865554 3344555 99999999886 4444 6999
Q ss_pred HHHHhhhhhhccCCcEEEEcCCchhHHHh--------HhhhcCCe--EEEec------CCCHHHHHHHHHHhhhhhhhcc
Q 011567 180 STMFSAIPCFCKKGDLIVADEGVHWGIQN--------GLYLSRST--VVYFK------HNDMDSLRNTLERVTADNKRAK 243 (483)
Q Consensus 180 ~a~~~ai~~~~~~gdiI~~~~~~h~s~~~--------g~~~s~~~--v~~~~------~~d~~~Le~~l~~~~~~~~~~~ 243 (483)
+||..++.+++++||.|+++...|.+... .+.+++.. ++.++ +.|+++|++.+++..
T Consensus 131 ~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~------- 203 (490)
T 2a7v_A 131 PANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFR------- 203 (490)
T ss_dssp HHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcC-------
Confidence 99999999999999999999888765321 23345542 33443 348999999886532
Q ss_pred CccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCC
Q 011567 244 KLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEG 322 (483)
Q Consensus 244 ~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~G 322 (483)
+++|++.... .|...|+++|+++|++||++|++|++|..|.++. |... ..+ ..+|++++|++|+| |+.|
T Consensus 204 --~klIi~~~s~--~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~-g~~~-~~~----~~aDiv~~S~hK~l~Gp~G 273 (490)
T 2a7v_A 204 --PRLIIAGTSA--YARLIDYARMREVCDEVKAHLLADMAHISGLVAA-KVIP-SPF----KHADIVTTTTHKTLRGARS 273 (490)
T ss_dssp --CSEEEECCSS--CCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHT-TSSC-CGG----GTCSEEEEESSGGGCSCSC
T ss_pred --CcEEEEcCCC--CCCcccHHHHHHHHHHcCCEEEEccccccccccC-CcCC-CCC----CCCCEEEECCcccCccccc
Confidence 3466654322 2567799999999999999999999998776542 2111 111 24599999999999 5779
Q ss_pred ceeeccHH---------------HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhc
Q 011567 323 GFCTGSAR---------------VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLS 385 (483)
Q Consensus 323 G~i~~~~~---------------~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~ 385 (483)
|+++++++ +.+.++....+..+++ .++..+++..++++... +.++..+++.+++++|.+.|.
T Consensus 274 G~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qgg-p~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~ 352 (490)
T 2a7v_A 274 GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGG-PHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALL 352 (490)
T ss_dssp EEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCS-CCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hheeeccchhcccccccchhhHHHHHHHHHHhcccCCCC-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99988764 4455543322222222 34444444444555543 225678899999999999999
Q ss_pred cCCCceeec-CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc----CCCC
Q 011567 386 DIHGLSIAS-NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS----AAHS 460 (483)
Q Consensus 386 ~~~~~~i~~-~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~----~~~t 460 (483)
+. |+++.. ..+++++++.+.+... + ..++.+ .|++.||.+.....|.......+.+||+..+ ..++
T Consensus 353 ~~-G~~v~~~~t~t~lv~vdl~~~g~----~---~~~~~~-~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~ 423 (490)
T 2a7v_A 353 ER-GYSLVSGGTDNHLVLVDLRPKGL----D---GARAER-VLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFR 423 (490)
T ss_dssp HT-TCEEGGGSCSSSEEEEECTTTTC----C---HHHHHH-HHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCC
T ss_pred Hc-CcEEecCCCCCeEEEEEeCCCCC----C---HHHHHH-HHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCC
Confidence 86 998864 3457888888754211 1 123333 5667799998764443221223567999654 4689
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011567 461 EADLVKACESLKRISAV 477 (483)
Q Consensus 461 ~edi~~~~~~l~~~~~~ 477 (483)
++|++++++.|.+++..
T Consensus 424 ~~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 424 EDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998864
No 139
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.95 E-value=1.1e-25 Score=232.70 Aligned_cols=350 Identities=14% Similarity=0.118 Sum_probs=227.3
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhh
Q 011567 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAI 186 (483)
Q Consensus 107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai 186 (483)
.|+.||||.++.. .+.+.+++.+++.. +. ..|+..+...+|+++++++++.++++++++|++|+..++
T Consensus 41 ~g~~ylD~~~~~~-----~~~v~~a~~~~~~~-~~------~~y~~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al 108 (467)
T 1ax4_A 41 SSAVYIDLLTDSG-----TNAMSDHQWAAMIT-GD------EAYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILF 108 (467)
T ss_dssp GGGCSEECSCSSS-----CCCEEHHHHHHHHT-CC------CCSSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHH
T ss_pred CCceeeecccCcC-----CHHHHHHHHHHHhh-cc------cccccCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHH
Confidence 5788999976522 17888888887764 21 134455677899999999999988888899999999999
Q ss_pred hhhcc----CCcE---EEEcCCchhHHHhHhhhcCCeEEEec------------C---CCHHHHHHHHHHhhhhhhhccC
Q 011567 187 PCFCK----KGDL---IVADEGVHWGIQNGLYLSRSTVVYFK------------H---NDMDSLRNTLERVTADNKRAKK 244 (483)
Q Consensus 187 ~~~~~----~gdi---I~~~~~~h~s~~~g~~~s~~~v~~~~------------~---~d~~~Le~~l~~~~~~~~~~~~ 244 (483)
+++.+ +||. |++....|.++...+...|.+++... . .|+++|++.+++....
T Consensus 109 ~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~------ 182 (467)
T 1ax4_A 109 PVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD------ 182 (467)
T ss_dssp HHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGG------
T ss_pred HHHHHhhccCCCccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCC------
Confidence 99887 8996 66664334555667777777766432 1 2788999888754211
Q ss_pred ccEEEEEecccCCC-CCccC---hHHHHHHHHHcCcEEEEeCcccc-ccc-------cCCCCcccccc-CCCCCceeEEE
Q 011567 245 LRRYIVVEAVYQNS-GQIAP---LDELIRLKEKYRFRVFLDESNSF-GVL-------GRSGRGLTEHC-GVPVDKIDIVT 311 (483)
Q Consensus 245 ~~~~iv~e~v~~~~-G~i~~---L~~l~~l~~k~~~~li~DEa~s~-g~l-------g~~G~g~~~~~-~v~~~~~Di~~ 311 (483)
++++|+++++++++ |.+.| +++|+++|++||++||+||++.+ +.+ +..|..+.+.. ++ ...+|+++
T Consensus 183 ~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~ 261 (467)
T 1ax4_A 183 NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDM-YKYADALT 261 (467)
T ss_dssp GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHH-GGGCSEEE
T ss_pred CeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhh-ccccceEE
Confidence 37899999999988 77665 78999999999999999999865 222 22121111100 00 01247888
Q ss_pred ccccccccCC-Cceeecc-H-HHHHHHHhcC---Cc-eeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567 312 AAMGHALATE-GGFCTGS-A-RVVDHQRLSS---SG-YVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL 384 (483)
Q Consensus 312 ~s~~K~lg~~-GG~i~~~-~-~~~~~~~~~~---~~-~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L 384 (483)
.|++|++|.. ||+++++ + ++++.++... .+ ..++ ..+....+++..+++...+ ++..++..++.+++.+.|
T Consensus 262 ~s~sK~~g~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~L 339 (467)
T 1ax4_A 262 MSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYG-GLAGRDMAAMVQGLEEGTE-EEYLHYRIGQVKYLGDRL 339 (467)
T ss_dssp EETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTT-TCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHH
T ss_pred EeccccCCCCcceEEEeCCHHHHHHHHHhhccccccccccC-CccchHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHH
Confidence 9999999866 8888877 6 7776654321 11 1122 2233222223335554432 235555667888899999
Q ss_pred ccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEe-eccc-cc----c--cCCCCCceEEEcc
Q 011567 385 SDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVT-SKRS-ML----D--KCRLPVGIRLFVS 456 (483)
Q Consensus 385 ~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~-~~~~-~~----~--~~~~~~~lRi~~~ 456 (483)
.+ .++++..+..+..+++.+..-............+++..+++++||.+.+ +.+. .. . .......|||+++
T Consensus 340 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~ 418 (467)
T 1ax4_A 340 RE-AGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIA 418 (467)
T ss_dssp HH-TTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECC
T ss_pred Hh-CCCCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecc
Confidence 87 4777765566777777731100000001112346777764666999987 3220 00 0 0000145999998
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHH
Q 011567 457 -AAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 457 -~~~t~edi~~~~~~l~~~~~~~ 478 (483)
..+|++|+++++++|++++++.
T Consensus 419 ~~~~t~e~i~~~~~~l~~~~~~~ 441 (467)
T 1ax4_A 419 RRVYTNDHMDYIADALIGLKEKF 441 (467)
T ss_dssp TTSSCHHHHHHHHHHHHTTHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhh
Confidence 4589999999999999988764
No 140
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.95 E-value=1.4e-25 Score=223.83 Aligned_cols=308 Identities=14% Similarity=0.126 Sum_probs=218.9
Q ss_pred eeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhh
Q 011567 109 KEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSA 185 (483)
Q Consensus 109 ~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~a 185 (483)
+++|||+++ |.+|+. |.+ + +. .. ..|+... ..++++.+|+++|.+ +.++.++|++++..+
T Consensus 29 ~~~i~l~~~~~~~~~~--~~v--a----~~--~~------~~Y~~~~-~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~ 91 (356)
T 1fg7_A 29 NGDVWLNANEYPTAVE--FQL--T----QQ--TL------NRYPECQ-PKAVIENYAQYAGVKPEQVLVSRGADEGIELL 91 (356)
T ss_dssp TCSEECSSCCCSSCCC--CCC--C----CC--CT------TSCCCSS-CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHH
T ss_pred CceEEeeCCCCCCCCC--HhH--h----hh--hh------ccCCCcc-HHHHHHHHHHHhCCChHHEEEcCCHHHHHHHH
Confidence 468999998 788873 555 1 11 11 1233222 578999999999864 445556667999999
Q ss_pred hhhhccCC-cEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567 186 IPCFCKKG-DLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG 259 (483)
Q Consensus 186 i~~~~~~g-diI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G 259 (483)
+++++++| |.|++..+.|.++...++..|.+++.++.+ |++++++.++ + +++|+++++++++|
T Consensus 92 ~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~----~-------~~~v~l~~p~nptG 160 (356)
T 1fg7_A 92 IRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLD----G-------VKVVYVCSPNNPTG 160 (356)
T ss_dssp HHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCCHHHHHTSCT----T-------EEEEEEESSCTTTC
T ss_pred HHHHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHHhc----C-------CCEEEEeCCCCCCC
Confidence 99999999 999999999999888888889998888753 5555555442 2 56777778888999
Q ss_pred CccCh---HHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHH
Q 011567 260 QIAPL---DELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVD 333 (483)
Q Consensus 260 ~i~~L---~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~ 333 (483)
.+.|. ++|+++|+ ||+++|+||+|+.+.. +..+....+. .+.++++.|+||++|..| ||+++++++++
T Consensus 161 ~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~---~~~~~~~~~~--~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~ 234 (356)
T 1fg7_A 161 QLINPQDFRTLLELTR-GKAIVVADEAYIEFCP---QASLAGWLAE--YPHLAILRTLSKAFALAGLRCGFTLANEEVIN 234 (356)
T ss_dssp CCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSG---GGCSGGGTTT--CTTEEEEEESSSTTCCGGGCCEEEEECHHHHH
T ss_pred CCCCHHHHHHHHHhCC-CCCEEEEEccchhhcC---CCcHHHHHhh--CCCEEEEecchHhhcCchhhhEEEEeCHHHHH
Confidence 99985 55556666 9999999999986431 1222222221 234788899999998666 99999999998
Q ss_pred HHHhcCCceeecCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCC
Q 011567 334 HQRLSSSGYVFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGS 411 (483)
Q Consensus 334 ~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~ 411 (483)
.++.....| +.+++.++++.++++.... .++..++++++.+++.+.|++++++....+..++++++.++
T Consensus 235 ~l~~~~~~~----~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~----- 305 (356)
T 1fg7_A 235 LLMKVIAPY----PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK----- 305 (356)
T ss_dssp HHHHHSCSS----CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET-----
T ss_pred HHHHhcCCC----CCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC-----
Confidence 887654443 4577777777777764321 34567888889999999998875432233456788888873
Q ss_pred chhhHHHHHHHHHHHHHhCCEEEEe-ecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567 412 MKNDLQLLEDIADWALKEDGVFVVT-SKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 474 (483)
Q Consensus 412 ~~~~~~~~~~i~~~~l~~~Gv~v~~-~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~ 474 (483)
+ ..++.+.+ .++||.+.+ +..+.. ++.+||+++ +++|+++++++|+++
T Consensus 306 ---~---~~~l~~~L-~~~gI~v~~~g~~~~~-----~~~iRis~~---~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 306 ---A---SSAVFKSL-WDQGIILRDQNKQPSL-----SGCLRITVG---TREESQRVIDALRAE 354 (356)
T ss_dssp ---T---HHHHHHHH-HHTTEECEECTTSTTC-----TTEEEEECC---CHHHHHHHHHHHHTC
T ss_pred ---C---HHHHHHHH-HHCCEEEEECCCCCCC-----CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 1 23566665 567999988 543321 245999985 689999999998753
No 141
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.2e-26 Score=236.53 Aligned_cols=336 Identities=15% Similarity=0.195 Sum_probs=237.6
Q ss_pred cCCCCCC--CCChHHHHHHHHHHHhcCCC-CCCCCCcccChHHHHHHHHHHHhhhCCC----CEEEecccHHHHHhhhhh
Q 011567 116 SANYLGL--IGHEKLLESCTSALEKYGVG-SCGPRGFYGTIDVHLDCEARIAKFLGTP----DSILYSYGLSTMFSAIPC 188 (483)
Q Consensus 116 s~~~lG~--~~~p~i~~a~~~~l~~~g~g-~~~~~~~~g~~~~~~~l~~~La~~~g~e----~~i~~~sG~~a~~~ai~~ 188 (483)
+++++|. .+++.+.+++.+++.++... ...+..+.+......++.+++++++|.+ ..+++++|++|+..++++
T Consensus 66 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a 145 (497)
T 3mc6_A 66 EGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLS 145 (497)
T ss_dssp GTCBSSSCSCCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHH
T ss_pred CCCEeeecCCCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHH
Confidence 4456664 24578999999999886432 2223333445567778889999999876 466778999999999988
Q ss_pred hcc-----CC---cEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecc
Q 011567 189 FCK-----KG---DLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAV 254 (483)
Q Consensus 189 ~~~-----~g---diI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v 254 (483)
+.+ +| |.|+++.+.|.++..++...|.+++.++.+ |+++|++.+++ .+++|+++.+
T Consensus 146 ~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~----------~~~~v~~~~p 215 (497)
T 3mc6_A 146 AKMYALHHRGITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINK----------NTVLLVGSAP 215 (497)
T ss_dssp HHHHHHHHSCCSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCTTTCSBCTTTTGGGCCS----------SEEEEEEETT
T ss_pred HHHHHHhcCCCCCceEEEeCCccHHHHHHHHHcCCeEEEEecCcccCcCCHHHHHHHHhh----------CCEEEEEECC
Confidence 754 45 899999999999999999999999888754 46666665532 3688999999
Q ss_pred cCCCCCccChHHHHHHHHHcCcEEEEeCcccccccc---CCCCccccccCCCCCceeEEEccccccc-cCCC-ceeeccH
Q 011567 255 YQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLG---RSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEG-GFCTGSA 329 (483)
Q Consensus 255 ~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg---~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~G-G~i~~~~ 329 (483)
++++|.+.|+++|+++|++||+++|+||+|+.+... ..|.+....+......+|+++.|++|++ ++.| |+++.++
T Consensus 216 ~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~ 295 (497)
T 3mc6_A 216 NFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRN 295 (497)
T ss_dssp CTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSS
T ss_pred CCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecC
Confidence 999999999999999999999999999999865422 1222222112222345699999999997 4333 7776666
Q ss_pred HHHHHHHh-cCC--------ceeecCCCcHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhcc-CCCceeecCCC
Q 011567 330 RVVDHQRL-SSS--------GYVFSASLPPYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSD-IHGLSIASNPE 397 (483)
Q Consensus 330 ~~~~~~~~-~~~--------~~~fs~~~~p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~-~~~~~i~~~~~ 397 (483)
+.+..... ... ...+.++.+....++..++++.+... .+..++..++++++++.|++ ++|+.+..++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~ 375 (497)
T 3mc6_A 296 SDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPR 375 (497)
T ss_dssp HHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCC
T ss_pred HHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 55443211 001 11122233444455555566655432 46788889999999999999 68999876667
Q ss_pred CCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 398 SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 398 ~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
.+++.+..... ...++.+.++ ++||.+..... +.++|++++ .+|++|+++++++|++++++
T Consensus 376 ~~~v~~~~~~~---------~~~~l~~~L~-~~Gi~v~~~~~--------~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~ 436 (497)
T 3mc6_A 376 YSVISFSSKTL---------NIHELSDRLS-KKGWHFNALQK--------PVALHMAFT-RLSAHVVDEICDILRTTVQE 436 (497)
T ss_dssp SSEEEEECTTT---------THHHHHHHHH-TTTCBCEECCS--------SCCEEEECC-TTTTCTHHHHHHHHHHHHHH
T ss_pred eeEEEEeCCCC---------CHHHHHHHHH-hCCEEEecCCC--------CCeEEEEEe-CCCHHHHHHHHHHHHHHHHH
Confidence 77877765311 1335677654 46998865433 245899998 78999999999999999988
Q ss_pred HHh
Q 011567 478 VLR 480 (483)
Q Consensus 478 ~~~ 480 (483)
+..
T Consensus 437 ~~~ 439 (497)
T 3mc6_A 437 LKS 439 (497)
T ss_dssp HTC
T ss_pred HHh
Confidence 754
No 142
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.94 E-value=2.4e-25 Score=224.48 Aligned_cols=315 Identities=16% Similarity=0.169 Sum_probs=224.7
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-ccCCcEEEEcCCch
Q 011567 125 HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVH 203 (483)
Q Consensus 125 ~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~~~h 203 (483)
.|++.+++.+++++... .|+..+...++++++++++|.++.+++++|++|+..+++++ .++||.|+++.+.|
T Consensus 16 ~~~~~~a~~~~l~~~~~-------~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~~~gd~Vi~~~~~~ 88 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQW-------WRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTF 88 (388)
T ss_dssp CHHHHHHHHHHHHTSCC-------BTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSC
T ss_pred CHHHHHHHHHHHHcCCe-------eecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCcc
Confidence 38899999999986211 23334678899999999999999999999999999999999 88999999999999
Q ss_pred hHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcE
Q 011567 204 WGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFR 277 (483)
Q Consensus 204 ~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~ 277 (483)
.++...+...|.+++.++.+ |+++|++.++. .+++|+ +.+++|.+.|+++|.++|++||++
T Consensus 89 ~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~----------~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~ 155 (388)
T 1b9h_A 89 ISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTP----------RTKVIM---PVHMAGLMADMDALAKISADTGVP 155 (388)
T ss_dssp THHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT----------TEEEEC---CBCGGGCCCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc----------CceEEE---EeCCccCcCCHHHHHHHHHHcCCE
Confidence 99999999999999888753 67777776632 256666 456689999999999999999999
Q ss_pred EEEeCccccccccCCCCccccccCCCCCceeEEEcccc--ccc-cCCCceeeccHH-H--HHHHHhc-CCc-------ee
Q 011567 278 VFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMG--HAL-ATEGGFCTGSAR-V--VDHQRLS-SSG-------YV 343 (483)
Q Consensus 278 li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~--K~l-g~~GG~i~~~~~-~--~~~~~~~-~~~-------~~ 343 (483)
+|+||+|+.|... .|..+ ..++ |+.+.||+ |++ |+.||+++++++ + ++.++.. ..+ |.
T Consensus 156 li~D~a~~~g~~~-~~~~~-~~~~------~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (388)
T 1b9h_A 156 LLQDAAHAHGARW-QGKRV-GELD------SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYF 227 (388)
T ss_dssp BCEECTTCTTCEE-TTEEG-GGSS------SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCC
T ss_pred EEEecchhcCCcc-CCeec-cccc------ceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccce
Confidence 9999999976432 22221 1121 45555666 777 456799888765 5 5554321 111 10
Q ss_pred -----ecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecC------CCCCEEEEEecCCCCCc
Q 011567 344 -----FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASN------PESPIVFLILEKSTGSM 412 (483)
Q Consensus 344 -----fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~------~~~~i~~l~l~~~~~~~ 412 (483)
++..++++.++++.+.++.++ +.+++.+++.+++.+.|++++++.+... ..++++++.++..
T Consensus 228 ~~~~g~~~~~~~~~~a~~~~~~~~l~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 300 (388)
T 1b9h_A 228 HKIAGSNMRLNEFSASVLRAQLARLD---EQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGL---- 300 (388)
T ss_dssp CCSCCCBCBCBHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTC----
T ss_pred eecccccCCcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCc----
Confidence 112357777776666665543 4677888899999999998878877642 2356888887431
Q ss_pred hhhHHHHHHHHHHHHHhCCEEEEeeccccccc------C-----------CCC-------CceEEEccCCC-CHHHHHHH
Q 011567 413 KNDLQLLEDIADWALKEDGVFVVTSKRSMLDK------C-----------RLP-------VGIRLFVSAAH-SEADLVKA 467 (483)
Q Consensus 413 ~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~------~-----------~~~-------~~lRi~~~~~~-t~edi~~~ 467 (483)
......++.+.+. ++||.++....+.... . ..+ ..||++++..+ |++||+++
T Consensus 301 --~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~ 377 (388)
T 1b9h_A 301 --TEERRNALVDRLV-EAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHAT 377 (388)
T ss_dssp --CHHHHHHHHHHHH-HTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHH
T ss_pred --CcccHHHHHHHHH-HCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHH
Confidence 0112345677655 4699998654332100 0 001 13999999999 99999999
Q ss_pred HHHHHHHHHH
Q 011567 468 CESLKRISAV 477 (483)
Q Consensus 468 ~~~l~~~~~~ 477 (483)
+++|++++++
T Consensus 378 ~~~l~~~~~~ 387 (388)
T 1b9h_A 378 AEIIADAVAR 387 (388)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 143
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.94 E-value=1.2e-25 Score=225.34 Aligned_cols=313 Identities=12% Similarity=0.071 Sum_probs=213.9
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC---CEEEe-cccHHHHHhhhhhhccCCcEEEEc
Q 011567 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP---DSILY-SYGLSTMFSAIPCFCKKGDLIVAD 199 (483)
Q Consensus 124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e---~~i~~-~sG~~a~~~ai~~~~~~gdiI~~~ 199 (483)
.+|++.+++.+++... . .....+...++++++++++|.+ +.+++ ++|++++..+++++.++||.|++.
T Consensus 30 ~~~~v~~a~~~~~~~~----~----~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~ 101 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPYF----R----TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVI 101 (376)
T ss_dssp CCHHHHHHHTSCCCCC----S----SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEE
T ss_pred CcHHHHHHhcCCCCCC----C----CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEE
Confidence 4578877776544211 0 1122357788999999999975 45553 677999999999999999977776
Q ss_pred CC-chhHH-HhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHH
Q 011567 200 EG-VHWGI-QNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKE 272 (483)
Q Consensus 200 ~~-~h~s~-~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~ 272 (483)
.+ +|... ...+...|.+++.++.+ |+++|++.+. . ++++|+++++++++|.+.|+++|+++|+
T Consensus 102 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~---~-------~~~~v~~~~~~nptG~~~~l~~i~~l~~ 171 (376)
T 3f0h_A 102 DGGSFGHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDN---Q-------NFTGLLVNVDETSTAVLYDTMMIGEFCK 171 (376)
T ss_dssp ESSHHHHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTT---S-------CCCEEEEESEETTTTEECCHHHHHHHHH
T ss_pred eCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhc---c-------CceEEEEecccCCcceecCHHHHHHHHH
Confidence 65 44322 23455567777766542 6677765431 1 3678888888899999999999999999
Q ss_pred HcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCC-ceeeccHHHHHHHHhcCC-ce-------
Q 011567 273 KYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRLSSS-GY------- 342 (483)
Q Consensus 273 k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~~~~~~~-~~------- 342 (483)
+||+++|+||++++|.... -.+.+ ++|++++|++|+++ +.| |+++.++++++.++.... ++
T Consensus 172 ~~~~~li~D~~~~~~~~~~----~~~~~-----~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (376)
T 3f0h_A 172 KNNMFFVCDCVSAFLADPF----NMNEC-----GADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDA 242 (376)
T ss_dssp HTTCEEEEECTTTTTTSCC----CHHHH-----TCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHH
T ss_pred HcCCEEEEEcCccccCccc----ccccc-----CccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHH
Confidence 9999999999998753310 01122 24899999999998 445 788899998887764211 11
Q ss_pred -------eecCCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCc
Q 011567 343 -------VFSASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSM 412 (483)
Q Consensus 343 -------~fs~~~~p~~~aaa~~al~~l~~~---~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~ 412 (483)
....+.+...++++.++++.+.+. +++.++.+++.+++.+.|+++ ++.+..+..++.+........
T Consensus 243 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~--- 318 (376)
T 3f0h_A 243 LKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL-PFELVSESPANGVTSVHPTTA--- 318 (376)
T ss_dssp HHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS-SEEECCSSBBTTEEEEEESSS---
T ss_pred HhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCccCccccCceEEEEeCCCC---
Confidence 011233455556677788877654 567888889999999999886 676654433333332222110
Q ss_pred hhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 413 KNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 413 ~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
+ ..++.+.++++.||.+.++..+. .+..+|++++..+|++|+++++++|++++++
T Consensus 319 --~---~~~l~~~l~~~~gi~v~~g~~~~-----~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 319 --N---AYDIFLKLKDEYGIWICPNGGEM-----KDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp --C---HHHHHHHHHHHSSEECEECCGGG-----TTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred --C---HHHHHHHHHHhCCEEEecCcccc-----CCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 1 23567766665599998763221 1244999999999999999999999998754
No 144
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.94 E-value=7.7e-26 Score=224.34 Aligned_cols=311 Identities=13% Similarity=0.097 Sum_probs=220.3
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC---CEEEe-cccHHHHHhhhhhhccCCcEEEEc
Q 011567 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP---DSILY-SYGLSTMFSAIPCFCKKGDLIVAD 199 (483)
Q Consensus 124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e---~~i~~-~sG~~a~~~ai~~~~~~gdiI~~~ 199 (483)
.+|.+.+++.+++..+ + .+...+...++++++++++|.+ +.+++ ++|++|+..+++++.+ |.|++.
T Consensus 11 ~~~~v~~a~~~~~~~~-------~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~ 80 (353)
T 2yrr_A 11 IPERVQKALLRPMRGH-------L-DPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR--GPVLVL 80 (353)
T ss_dssp CCHHHHGGGGSCCCCT-------T-CHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEE
T ss_pred CCHHHHHHHhcccccc-------c-CHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEE
Confidence 4688888776655431 0 1122356889999999999973 44555 7778999999998876 556665
Q ss_pred CCchhHH--HhHhhhcCCeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHH
Q 011567 200 EGVHWGI--QNGLYLSRSTVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKE 272 (483)
Q Consensus 200 ~~~h~s~--~~g~~~s~~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~ 272 (483)
...|.+. ...+...|.+++.++. .|+++|++.+++. ++++|+++++++++|.+.|+++|.++|+
T Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---------~~~~v~~~~~~nptG~~~~~~~i~~l~~ 151 (353)
T 2yrr_A 81 VNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRR---------RYRMVALVHGETSTGVLNPAEAIGALAK 151 (353)
T ss_dssp ECSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHS---------CCSEEEEESEETTTTEECCHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhC---------CCCEEEEEccCCCcceecCHHHHHHHHH
Confidence 6566553 3445667888887774 4788888887642 1567888899999999999999999999
Q ss_pred HcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCC-ceeeccHHHHHHHHh-c-----------
Q 011567 273 KYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRL-S----------- 338 (483)
Q Consensus 273 k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~~~~-~----------- 338 (483)
+||+++|+||+|++|... ..+ ..+ ++|++++|++|+++ +.| |++++++++++.++. .
T Consensus 152 ~~~~~li~D~a~~~~~~~---~~~-~~~-----~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~ 222 (353)
T 2yrr_A 152 EAGALFFLDAVTTLGMLP---FSM-RAM-----GVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLARVAE 222 (353)
T ss_dssp HHTCEEEEECTTTTTTSC---CCH-HHH-----TCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHHHHH
T ss_pred HcCCeEEEEcCccccccc---ccc-ccc-----CceEEEecCcccccCCCceEEEEECHHHHHHhccCCCccccHHHHhh
Confidence 999999999999865331 111 112 24899999999774 445 899999998876641 0
Q ss_pred -CCceeecCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecCC--CCCEEEEEecCCCCCch
Q 011567 339 -SSGYVFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNP--ESPIVFLILEKSTGSMK 413 (483)
Q Consensus 339 -~~~~~fs~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~--~~~i~~l~l~~~~~~~~ 413 (483)
.....+..+.++..++++.++++.+.+ .++.+++++++.+++.+.|+++ |+++..+. .+.++++.++...
T Consensus 223 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~---- 297 (353)
T 2yrr_A 223 HWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPTVLVVRPPEGV---- 297 (353)
T ss_dssp HHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTTEEEEECCTTC----
T ss_pred hhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCeEEEEECCCCC----
Confidence 001223345577777777778887643 2467889999999999999987 88876543 4556677764211
Q ss_pred hhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHH-HHHHHHHHHHHH
Q 011567 414 NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLV-KACESLKRISAV 477 (483)
Q Consensus 414 ~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~-~~~~~l~~~~~~ 477 (483)
+ ..++.+.+.+ +||.+.+...+.. +..+|++++..+|++|++ +++++|+++++.
T Consensus 298 -~---~~~~~~~l~~-~gi~v~~g~~~~~-----~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 298 -D---ADRLVRALYA-EGVAVAGGIGPTR-----GQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp -C---HHHHHHHHHH-TTEECEECCGGGT-----TTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred -C---HHHHHHHHHH-CCEEEeCCccccC-----CCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 1 2356766555 5999987653221 245999998888999999 999999988753
No 145
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.94 E-value=1.7e-25 Score=226.67 Aligned_cols=288 Identities=17% Similarity=0.146 Sum_probs=211.1
Q ss_pred ChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHH
Q 011567 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDS 227 (483)
Q Consensus 152 ~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~ 227 (483)
..+...++++++++++|.++++++++|++|+..+++++.++||.|+++.+.|.++...+ ...|.++..++.+|+++
T Consensus 63 ~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~ 142 (398)
T 1gc0_A 63 SNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQA 142 (398)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHH
T ss_pred CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHH
Confidence 34678999999999999999999999999999999999999999999999888877665 56688898898889888
Q ss_pred HHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCce
Q 011567 228 LRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI 307 (483)
Q Consensus 228 Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~ 307 (483)
+++.+++ ++++|+++++++++|.+.|+++|+++|++||+++|+||+|+.|.++. .+ . .++
T Consensus 143 l~~~i~~----------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~---~~--~-----~~~ 202 (398)
T 1gc0_A 143 LEAAMTP----------ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQR---PL--E-----LGA 202 (398)
T ss_dssp HHHHCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCC---GG--G-----GTC
T ss_pred HHHhcCC----------CCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCC---ch--h-----hCc
Confidence 8877643 37899999999999999999999999999999999999998776532 11 1 234
Q ss_pred eEEEccccccccCC----CceeeccHHHHH-HHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q 011567 308 DIVTAAMGHALATE----GGFCTGSARVVD-HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRT 382 (483)
Q Consensus 308 Di~~~s~~K~lg~~----GG~i~~~~~~~~-~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~ 382 (483)
|+++.|++|++++. ||+++++++.++ .++..... .++.+.+|..++++.++++.+ +...++..++.+.+.+
T Consensus 203 d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~ 278 (398)
T 1gc0_A 203 DLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKD-MTGAVLSPHDAALLMRGIKTL---NLRMDRHCANAQVLAE 278 (398)
T ss_dssp SEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHH-HTCCCCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHH
T ss_pred eEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhc-cCCCCCCHHHHHHHHhccchH---HHHHHHHHHHHHHHHH
Confidence 89999999999843 689988887665 34332211 134567888888887777654 3466777788888888
Q ss_pred hhccCCCc--------------eeec---CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecc------
Q 011567 383 GLSDIHGL--------------SIAS---NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKR------ 439 (483)
Q Consensus 383 ~L~~~~~~--------------~i~~---~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~------ 439 (483)
.|.+.+++ .+.. ...++++.+.++. ... + +..++++.|+.......
T Consensus 279 ~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~---~-~~~~l~~~~i~~~~~s~G~~~sl 347 (398)
T 1gc0_A 279 FLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG-------GIG---A-GRRFMNALQLFSRAVSLGDAESL 347 (398)
T ss_dssp HHHTCTTEEEEEEC----------------CCTTEEEEEETT-------HHH---H-HHHHHHHCSSSEECSCCSCSSCE
T ss_pred HHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC-------CHH---H-HHHHHHhCCCceeccCCCCccee
Confidence 88765432 2221 1357888888742 111 1 23345556776654211
Q ss_pred ---cc-cccCC-----------CCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567 440 ---SM-LDKCR-----------LPVGIRLFVSAAHSEADLVKACESLKRI 474 (483)
Q Consensus 440 ---~~-~~~~~-----------~~~~lRi~~~~~~t~edi~~~~~~l~~~ 474 (483)
+. ..++. .+..||++++..+++++|+.+.++|+++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 348 AQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp EECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 10 00111 1245999999999999999999988764
No 146
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.94 E-value=8.3e-26 Score=228.94 Aligned_cols=323 Identities=14% Similarity=0.182 Sum_probs=230.0
Q ss_pred eeEEEeecCC-CCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhh
Q 011567 109 KEVVNFASAN-YLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIP 187 (483)
Q Consensus 109 ~~~id~~s~~-~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~ 187 (483)
++||||.++. .++ |++.+++.++++.. .|+..+...++++.+++++|.++.+++++|++|+..+++
T Consensus 30 ~~~id~~~~~~~~~----~~v~~a~~~~~~~~---------~y~~~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~ 96 (399)
T 2oga_A 30 VPFLDLKAAYEELR----AETDAAIARVLDSG---------RYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALR 96 (399)
T ss_dssp BCSCCHHHHHHHTH----HHHHHHHHHHHHHT---------CCSSSHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHH
T ss_pred CcccccCcCCCCCC----HHHHHHHHHHHhcC---------CCCCchhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHH
Confidence 4789998862 222 89999999988762 233346788999999999999989999999999999999
Q ss_pred hh-ccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCC
Q 011567 188 CF-CKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQ 260 (483)
Q Consensus 188 ~~-~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~ 260 (483)
++ .++||.|++..+.|.++...++..|.+++.++.+ |+++|++.+++ ++++|+++ +++|.
T Consensus 97 ~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~----------~~~~v~~~---n~tG~ 163 (399)
T 2oga_A 97 GLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITP----------RTRALLPV---HLYGH 163 (399)
T ss_dssp HTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCT----------TEEEECCB---CGGGC
T ss_pred HhCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCC----------CCeEEEEe---CCcCC
Confidence 99 8899999999999999999999999988887642 67777766642 25666643 45799
Q ss_pred ccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccc--cccccC--CCceeecc-HHHHHHH
Q 011567 261 IAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAM--GHALAT--EGGFCTGS-ARVVDHQ 335 (483)
Q Consensus 261 i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~--~K~lg~--~GG~i~~~-~~~~~~~ 335 (483)
+.|+++|.++|++||+++|+||+|+.|... .+.. ++.- .|+++.|+ +|++|+ .||+++++ +++++.+
T Consensus 164 ~~~l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~~----~~~~---~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l 235 (399)
T 2oga_A 164 PADMDALRELADRHGLHIVEDAAQAHGARY-RGRR----IGAG---SSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERL 235 (399)
T ss_dssp CCCHHHHHHHHHHHTCEECEECTTCTTCEE-TTEE----TTCT---TCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEEECcccccCcc-CCee----cccc---cCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHH
Confidence 999999999999999999999999977532 2322 2211 28888898 799986 56888775 7877665
Q ss_pred Hhc-CCce---------eecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCC--CCE-EE
Q 011567 336 RLS-SSGY---------VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPE--SPI-VF 402 (483)
Q Consensus 336 ~~~-~~~~---------~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~--~~i-~~ 402 (483)
+.. ..+. .+...++++.++++.++++.++ +..++.+++.+++.+.|.+++++.+...+. .++ +.
T Consensus 236 ~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~---~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~ 312 (399)
T 2oga_A 236 RMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD---SWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHL 312 (399)
T ss_dssp HHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH---HHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSS
T ss_pred HHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEE
Confidence 431 1111 1222467888888888887664 366777888999999999887776643221 122 11
Q ss_pred EEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc-----------cCCCC-------CceEEEccCCCCHHHH
Q 011567 403 LILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD-----------KCRLP-------VGIRLFVSAAHSEADL 464 (483)
Q Consensus 403 l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~-----------~~~~~-------~~lRi~~~~~~t~edi 464 (483)
+.+... + ..++.+.+ .++||.+.+....... ....| ..|||+++..+|++|+
T Consensus 313 ~~~~~~------~---~~~l~~~L-~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi 382 (399)
T 2oga_A 313 FTVRTE------R---RDELRSHL-DARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQA 382 (399)
T ss_dssp EEEECS------S---HHHHHHHH-HHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHH
T ss_pred EEEECC------C---HHHHHHHH-HHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHH
Confidence 222111 1 23566654 4569998763211000 00001 3499999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 011567 465 VKACESLKRISAVV 478 (483)
Q Consensus 465 ~~~~~~l~~~~~~~ 478 (483)
++++++|+++++++
T Consensus 383 ~~~~~~l~~~~~~l 396 (399)
T 2oga_A 383 LRVIDAVREWAERV 396 (399)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
No 147
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.94 E-value=8.7e-26 Score=233.47 Aligned_cols=324 Identities=15% Similarity=0.095 Sum_probs=228.1
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCC-CCCCC-CcccChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhhhhhccCC
Q 011567 118 NYLGLIGHEKLLESCTSALEKYGVG-SCGPR-GFYGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIPCFCKKG 193 (483)
Q Consensus 118 ~~lG~~~~p~i~~a~~~~l~~~g~g-~~~~~-~~~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~~~~~~g 193 (483)
|.+|. .++.+.+++.++++.++.. ..+.+ +..+..+...++++++++++|.+ +.++.+++++++..++.++.+++
T Consensus 74 ~~~g~-~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~ 152 (465)
T 3e9k_A 74 NSLGL-QPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPT 152 (465)
T ss_dssp TTSCC-EETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCC
T ss_pred CccCC-ChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhcccc
Confidence 45676 5677888888887765421 11111 11233456688999999999965 45566777888888999987554
Q ss_pred ---cEEEEcCCchhHHHh----HhhhcCCeE-----EEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccC
Q 011567 194 ---DLIVADEGVHWGIQN----GLYLSRSTV-----VYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ 256 (483)
Q Consensus 194 ---diI~~~~~~h~s~~~----g~~~s~~~v-----~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~ 256 (483)
+.|+++.+.|.+... .++..|.++ ...+.+ |++++++.+++..+ ++++|+++++++
T Consensus 153 ~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~-------~~~lv~~~~~~n 225 (465)
T 3e9k_A 153 PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGD-------SIAVILFSGVHF 225 (465)
T ss_dssp SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGG-------GEEEEEEESBCT
T ss_pred CCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcCC-------CeEEEEEeCccc
Confidence 458888888877443 444556553 233332 78999998876433 378999999999
Q ss_pred CCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc--cCCC-ceeeccHHHHH
Q 011567 257 NSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL--ATEG-GFCTGSARVVD 333 (483)
Q Consensus 257 ~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l--g~~G-G~i~~~~~~~~ 333 (483)
++|.+.|+++|.++|++||+++|+|++|+.|.... ++...++|++++|++|.+ |+.| |+++.++++.+
T Consensus 226 ~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~---------~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~ 296 (465)
T 3e9k_A 226 YTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVEL---------YLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAH 296 (465)
T ss_dssp TTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCC---------CHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGGTT
T ss_pred CcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCC---------chhhcCCCEEEECcccccccCCCceEEEEEcHHHHh
Confidence 99999999999999999999999999998765431 111123589999999999 4444 78888887766
Q ss_pred HHHhcCCc---------------eee--------cCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccC-
Q 011567 334 HQRLSSSG---------------YVF--------SASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDI- 387 (483)
Q Consensus 334 ~~~~~~~~---------------~~f--------s~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~- 387 (483)
.++....+ +.+ .++.++..+++..++++.+.+ .++++++.+++.+++.+.|+++
T Consensus 297 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 376 (465)
T 3e9k_A 297 TIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNY 376 (465)
T ss_dssp TSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 54322111 111 124677778888888888765 3568889999999999999875
Q ss_pred ---------CCceeecCC----CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEE
Q 011567 388 ---------HGLSIASNP----ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLF 454 (483)
Q Consensus 388 ---------~~~~i~~~~----~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~ 454 (483)
+++++..+. .++++.+.++.. ..++.+.+ .++||.+.... +..||++
T Consensus 377 ~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~----------~~~l~~~L-~~~Gi~v~~~~---------~~~iRis 436 (465)
T 3e9k_A 377 GKDKAATKKPVVNIITPSHVEERGCQLTITFSVP----------NKDVFQEL-EKRGVVCDKRN---------PNGIRVA 436 (465)
T ss_dssp C---------CEEECSCSSGGGBCSCEEEEECCT----------TCCHHHHH-HTTTEECEEET---------TTEEEEB
T ss_pred cccccccCCCCeEEeCCCCHhhcccEEEEEecCC----------HHHHHHHH-HHCCEEEecCC---------CCEEEEe
Confidence 688877543 277888887521 11356654 45699986321 2459999
Q ss_pred c-cCCCCHHHHHHHHHHHHHHHHHH
Q 011567 455 V-SAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 455 ~-~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
+ +..+|++|+++++++|++++++.
T Consensus 437 ~~~~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 437 PVPLYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred CcccCCCHHHHHHHHHHHHHHHHhc
Confidence 8 89999999999999999988653
No 148
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.94 E-value=3.5e-25 Score=225.16 Aligned_cols=336 Identities=16% Similarity=0.170 Sum_probs=219.8
Q ss_pred eEEEeecC-CCCCCCCChHHHHHHHHHH-HhcCCCCCCCCCcccChHHHHHH----HHHHHhhhCCCCE-EEecccHHHH
Q 011567 110 EVVNFASA-NYLGLIGHEKLLESCTSAL-EKYGVGSCGPRGFYGTIDVHLDC----EARIAKFLGTPDS-ILYSYGLSTM 182 (483)
Q Consensus 110 ~~id~~s~-~~lG~~~~p~i~~a~~~~l-~~~g~g~~~~~~~~g~~~~~~~l----~~~La~~~g~e~~-i~~~sG~~a~ 182 (483)
+.+++.++ |++ +|.+.+++.+++ ..|+.+.++++. |+....+.++ ++.+++++|.+.. +++++|++|+
T Consensus 26 ~~i~l~~~~~~~----~~~v~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sGt~a~ 100 (417)
T 3n0l_A 26 EGLEMIASENFT----LPEVMEVMGSILTNKYAEGYPGKRY-YGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQAN 100 (417)
T ss_dssp HSEECCTTCCCC----CHHHHHHHTBGGGGCCCCEETTEES-SSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHH
T ss_pred cCeeeecccCCC----CHHHHHHHhhhhhccccccCCCccc-cccchHHHHHHHHHHHHHHHHhCCCCcceEeccHHHHH
Confidence 35666555 553 799999999988 455555544443 3333444444 4588999998766 7789999999
Q ss_pred HhhhhhhccCCcEEEEcCCchhHHHh---HhhhcC--CeEEEecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEe
Q 011567 183 FSAIPCFCKKGDLIVADEGVHWGIQN---GLYLSR--STVVYFKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVE 252 (483)
Q Consensus 183 ~~ai~~~~~~gdiI~~~~~~h~s~~~---g~~~s~--~~v~~~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e 252 (483)
..+++++.++||.|+++.+.|.++.. .+...+ ..++.++. .|+++|++.+++. ++++|++.
T Consensus 101 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~---------~~~~v~~~ 171 (417)
T 3n0l_A 101 QGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE---------KPKLIVCG 171 (417)
T ss_dssp HHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHH---------CCSEEEEC
T ss_pred HHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhc---------CCeEEEEC
Confidence 99999999999999999998876543 223332 33444443 4788998888642 14566554
Q ss_pred cccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeecc-HH
Q 011567 253 AVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGS-AR 330 (483)
Q Consensus 253 ~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~-~~ 330 (483)
+.. .|.+.|+++|+++|++||+++|+||+|+.|.... |. +... ...+|++++|++|+|+ +.|||++++ ++
T Consensus 172 ~~~--~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~-~~----~~~~-~~~~di~~~s~sK~l~g~~~G~~~~~~~~ 243 (417)
T 3n0l_A 172 ASA--YARVIDFAKFREIADEIGAYLFADIAHIAGLVVA-GE----HPSP-FPYAHVVSSTTHKTLRGPRGGIIMTNDEE 243 (417)
T ss_dssp CSS--CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHT-TS----SCCC-TTTCSEEEEESSTTTCSCSCEEEEESCHH
T ss_pred Ccc--cCccCCHHHHHHHHHHcCCEEEEECccchhhhhc-cc----CCCc-cccceEEEeeCccccCCCCeeEEEECCHH
Confidence 433 3999999999999999999999999987665432 11 1111 1245899999999995 558999988 78
Q ss_pred HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCCceeec-CCCCCEEEEEecC
Q 011567 331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIAS-NPESPIVFLILEK 407 (483)
Q Consensus 331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~-~~~~~i~~l~l~~ 407 (483)
+.+.++.......+ ++.++..++++.+++.... ...+..+++.++.+++.+.|.+ .|+.+.. ...++++++.+..
T Consensus 244 ~~~~~~~~~~~~~~-~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~ 321 (417)
T 3n0l_A 244 LAKKINSAIFPGIQ-GGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD-RKFKLVSDGTDNHLVLMSFLD 321 (417)
T ss_dssp HHHHHHHHHTTTTC-SSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-TTCEEGGGSCSSSEEEEECTT
T ss_pred HHHHHhhhhCCccc-CCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-CCceeccCCCCceEEEEEccc
Confidence 88776544322222 2335555555555665532 2246788888999999999988 4887764 2346677777643
Q ss_pred CCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccccc-CCCCCceEEEccC----CCCHHHHHHHHHHHHHHHHH
Q 011567 408 STGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK-CRLPVGIRLFVSA----AHSEADLVKACESLKRISAV 477 (483)
Q Consensus 408 ~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~-~~~~~~lRi~~~~----~~t~edi~~~~~~l~~~~~~ 477 (483)
... + ...+.+ .|+++||.+.+...+.... ...+.++|++++. .+|++|+++++++|++++++
T Consensus 322 ~~~----~---~~~~~~-~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 322 REF----S---GKDADL-ALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp SSS----C---HHHHHH-HHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCC----C---HHHHHH-HHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 211 1 123444 4566799998765443211 1123569998653 36899999999999998864
No 149
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.94 E-value=2.1e-26 Score=234.00 Aligned_cols=321 Identities=13% Similarity=0.077 Sum_probs=221.6
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh-CCC-------CE--EEeccc
Q 011567 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-GTP-------DS--ILYSYG 178 (483)
Q Consensus 109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~-g~e-------~~--i~~~sG 178 (483)
.++|||+.++|+++.++|.+.+++.++...... .|+......+|++.+++++ |.+ +. ..+++|
T Consensus 41 ~~~i~l~~g~~~d~~~~~~v~~a~~~a~~~~~~-------~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g 113 (409)
T 4eu1_A 41 KRKVNLSIGVYRDDADQPFVLECVKQATLGTNM-------DYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGG 113 (409)
T ss_dssp SSCEECCCSSCCCTTSCCCCCHHHHTCCCCSCC-------CCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHH
T ss_pred cCceeeeeeEEECCCCCEeecHHHHhcCccccc-------cCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccc
Confidence 368999999998887888888888877221111 2222223467888888876 532 23 235777
Q ss_pred HHHHHh---hhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEE
Q 011567 179 LSTMFS---AIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRY 248 (483)
Q Consensus 179 ~~a~~~---ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~ 248 (483)
++++.. ++++++++||.|+++.++|.++...++..|.+++.++.+ |+++|++.+++... ++++
T Consensus 114 ~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~-------~~~~ 186 (409)
T 4eu1_A 114 TGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPE-------GSVI 186 (409)
T ss_dssp HHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCT-------TCEE
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCC-------CcEE
Confidence 777664 467788999999999999999999999999999888751 78888888865322 3677
Q ss_pred EEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccC---CCCccccccCCCCCceeEEEccccccccCCC
Q 011567 249 IVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGR---SGRGLTEHCGVPVDKIDIVTAAMGHALATEG 322 (483)
Q Consensus 249 iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~---~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G 322 (483)
+++..++|++|.+.+ +++|+++|++||+++|+||+|+.+.++. .+.++....+..+ ..++++|+||++|..|
T Consensus 187 i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~S~SK~~g~~G 264 (409)
T 4eu1_A 187 LVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVP--NLIVAQSFSKNFGLYG 264 (409)
T ss_dssp EEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSS--CCEEEEECTTTSSCGG
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCC--cEEEEecCcccccCcc
Confidence 777778899999998 5669999999999999999998765542 1122222223322 2578899999999777
Q ss_pred ---cee---eccHH----HHHHHHhcCCceeecCCCcHHHHHHHHHHHHH-------HhcCcHHHHHHHHHHHHHHHhhc
Q 011567 323 ---GFC---TGSAR----VVDHQRLSSSGYVFSASLPPYLASAAITAIDV-------LEENPDLITKLKKNTAILRTGLS 385 (483)
Q Consensus 323 ---G~i---~~~~~----~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~-------l~~~~~~~~~l~~~~~~l~~~L~ 385 (483)
||+ +++++ +++.++.......+ +.++..+.++.++++. .+...+.+++++++.+++.+.|+
T Consensus 265 ~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 342 (409)
T 4eu1_A 265 HRCGALHISTASAEEAKRLVSQLALLIRPMYN--NPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELK 342 (409)
T ss_dssp GCCEEEEEECSSHHHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHHHHhhhcC--CCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 994 67777 55555432212222 2356666666666652 22234578889999999999998
Q ss_pred cCCC----ceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCH
Q 011567 386 DIHG----LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSE 461 (483)
Q Consensus 386 ~~~~----~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~ 461 (483)
++ | +.+..+..+.+.++.+. . +++..+++++||.+.+ +.||+++. +|+
T Consensus 343 ~~-g~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~ll~~~gv~v~p-------------~~Ri~~~~-~~~ 394 (409)
T 4eu1_A 343 AC-GSVHDWSHIERQVGMMAYTGLT---------R----EQVELLRSEYHIYMTL-------------NGRAAVSG-LNS 394 (409)
T ss_dssp HT-TCCSCCHHHHHSCSSEEECCCC---------H----HHHHHHHHHHCEECCT-------------TCEEEGGG-CCT
T ss_pred hc-CCCCCcceecCCceEEEEeCCC---------H----HHHHHHHHcCCEEEcC-------------CCEEEEEe-cCH
Confidence 86 4 55544434444443221 1 3355667667998864 26898864 677
Q ss_pred HHHHHHHHHHHHHH
Q 011567 462 ADLVKACESLKRIS 475 (483)
Q Consensus 462 edi~~~~~~l~~~~ 475 (483)
+|+++++++|++++
T Consensus 395 ~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 395 TNVEYVSQAIHNVT 408 (409)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh
Confidence 88999999998875
No 150
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.94 E-value=9.3e-25 Score=225.06 Aligned_cols=343 Identities=15% Similarity=0.126 Sum_probs=226.0
Q ss_pred CCeeEEEeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhh
Q 011567 107 SGKEVVNFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSA 185 (483)
Q Consensus 107 ~G~~~id~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~a 185 (483)
.|+.|+||.++ +..+. .+.+.+++. . +. ..|+..+...+|+++|+++++.++++++++|++|+..+
T Consensus 40 ~~~~ylD~~~~~~~~~~--~~~~~~a~~----~-~~------~~y~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~a 106 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNAM--SDKQWAGMM----M-GD------EAYAGSENFYHLERTVQELFGFKHIVPTHQGRGAENLL 106 (456)
T ss_dssp GGGCSEECSCSSSCCCC--CHHHHHHHT----T-CC------CCSSSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHH
T ss_pred cccceeeeccccCCccC--CHHHHHHhh----c-ch------hhcccChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHH
Confidence 56789999876 33333 345544443 2 11 13445567889999999999999999999999999999
Q ss_pred hhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC--------------C-CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567 186 IPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--------------N-DMDSLRNTLERVTADNKRAKKLRRYIV 250 (483)
Q Consensus 186 i~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~--------------~-d~~~Le~~l~~~~~~~~~~~~~~~~iv 250 (483)
++++.++|| |+.+..+|.++...+...|.+++.++. + |+++|++.+++... ..+++|+
T Consensus 107 l~~l~~~gd-i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~------~~~~~v~ 179 (456)
T 2ez2_A 107 SQLAIKPGQ-YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGA------ENIAYIC 179 (456)
T ss_dssp HHHHCCTTC-EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG------GGEEEEE
T ss_pred HHHhCCCCC-EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccc------cceeEEE
Confidence 999999999 655555558888888889988877642 2 78889888865321 1257888
Q ss_pred EecccC-CCCCccC---hHHHHHHHHHcCcEEEEeCcccccc--------ccCCCCcccc---ccCCCCCceeEEEcccc
Q 011567 251 VEAVYQ-NSGQIAP---LDELIRLKEKYRFRVFLDESNSFGV--------LGRSGRGLTE---HCGVPVDKIDIVTAAMG 315 (483)
Q Consensus 251 ~e~v~~-~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~--------lg~~G~g~~~---~~~v~~~~~Di~~~s~~ 315 (483)
+++..+ ++|.+.| +++|+++|++||+++|+||+|++|. ++..|..+.+ ..+..+ |+++.|++
T Consensus 180 l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~---d~~~~S~k 256 (456)
T 2ez2_A 180 LAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYA---DGCTMSGK 256 (456)
T ss_dssp EESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTC---SEEEEETT
T ss_pred EeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccC---CEEEEeCc
Confidence 886665 8898887 9999999999999999999998751 2233332211 122222 67777888
Q ss_pred ccccCC-Cceeec-cHHHHHHHHhcC---CceeecCCCcHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCC
Q 011567 316 HALATE-GGFCTG-SARVVDHQRLSS---SGYVFSASLPPYLASA-AITAIDVLEENPDLITKLKKNTAILRTGLSDIHG 389 (483)
Q Consensus 316 K~lg~~-GG~i~~-~~~~~~~~~~~~---~~~~fs~~~~p~~~aa-a~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~ 389 (483)
|..+.. ||++++ ++++++.++... .++....+.++..+++ +.+.++.+. ++..++.+++.+++++.|++. |
T Consensus 257 k~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g 333 (456)
T 2ez2_A 257 KDCLVNIGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ--YEYIEHRVKQVRYLGDKLKAA-G 333 (456)
T ss_dssp TTTCCSSCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHT-T
T ss_pred ccCCCCceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHhcC-C
Confidence 877633 799988 678877654321 1111111223333333 444444332 356777888889999999885 7
Q ss_pred ceeecCCCCCEEEEEecC--CCCCchhhHHH-HHHHHHHHHHhCCEEEEee-ccc-cc----cc--CCCCCceEEEccCC
Q 011567 390 LSIASNPESPIVFLILEK--STGSMKNDLQL-LEDIADWALKEDGVFVVTS-KRS-ML----DK--CRLPVGIRLFVSAA 458 (483)
Q Consensus 390 ~~i~~~~~~~i~~l~l~~--~~~~~~~~~~~-~~~i~~~~l~~~Gv~v~~~-~~~-~~----~~--~~~~~~lRi~~~~~ 458 (483)
+++..+..+.++++.+.. +... .... ...++..+++++||.+.+. .+. .. .. ......|||+++..
T Consensus 334 ~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~ 410 (456)
T 2ez2_A 334 VPIVEPVGGHAVFLDARRFCEHLT---QDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRR 410 (456)
T ss_dssp CCBCSSCCSSEEEEEHHHHTTTSC---GGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTT
T ss_pred CccccCCCceEEEEEhHHhcCCCC---hhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCC
Confidence 777655567788887631 1100 1111 3445666545669986542 211 00 00 00124599999887
Q ss_pred -CCHHHHHHHHHHHHHHHHHH
Q 011567 459 -HSEADLVKACESLKRISAVV 478 (483)
Q Consensus 459 -~t~edi~~~~~~l~~~~~~~ 478 (483)
+|++|+++++++|++++++.
T Consensus 411 ~~t~e~i~~~~~~l~~~l~~~ 431 (456)
T 2ez2_A 411 VYTYAHMDVVADGIIKLYQHK 431 (456)
T ss_dssp TCCHHHHHHHHHHHHHHHHTG
T ss_pred CCCHHHHHHHHHHHHHHHhhh
Confidence 89999999999999998763
No 151
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.94 E-value=1.1e-24 Score=221.17 Aligned_cols=290 Identities=14% Similarity=0.136 Sum_probs=212.9
Q ss_pred hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCCCHHHH
Q 011567 153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSL 228 (483)
Q Consensus 153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~L 228 (483)
.+...++++++++++|.++++++++|++|+..++.++.++||.|++..+.|.++.. .+...|.+++.++.+|+++|
T Consensus 61 ~~~~~~l~~~ia~~~g~~~~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l 140 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEV 140 (404)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHH
T ss_pred ChHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHH
Confidence 35678999999999999999999999999999999999999999999999988777 67788999999998899888
Q ss_pred HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHH-cCcEEEEeCccccccccCCCCccccccCCCCCce
Q 011567 229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK-YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI 307 (483)
Q Consensus 229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k-~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~ 307 (483)
++.+++ ++++|+++++++++|.+.|+++|+++|++ ||+++|+||+|+.+.+. ..+ + + ++
T Consensus 141 ~~~i~~----------~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~---~~~-~-~-----~~ 200 (404)
T 1e5e_A 141 KKHMKP----------NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMIT---NPV-D-F-----GV 200 (404)
T ss_dssp HHHCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTC---CGG-G-G-----TC
T ss_pred HHhcCC----------CCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhC---Ccc-c-c-----CC
Confidence 877643 27899999999999999999999999999 99999999999976543 111 1 2 34
Q ss_pred eEEEccccccccCC----CceeeccHHHHH-HHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q 011567 308 DIVTAAMGHALATE----GGFCTGSARVVD-HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRT 382 (483)
Q Consensus 308 Di~~~s~~K~lg~~----GG~i~~~~~~~~-~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~ 382 (483)
|+++.|++|+++.. |||+++++++++ .++.....+ |+.+.+|+.+.++.++++.+ +...++..++.+.+.+
T Consensus 201 di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~-~g~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~ 276 (404)
T 1e5e_A 201 DVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDI-TGSVISPHDAWLITRGLSTL---NIRMKAESENAMKVAE 276 (404)
T ss_dssp SEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCC-CCCCCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHhHhHH---HHHHHHHHHHHHHHHH
Confidence 89999999999744 589999998887 666543332 24456888888777777643 2355566667666666
Q ss_pred hhccCC--------------Cceeec---CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccc-----
Q 011567 383 GLSDIH--------------GLSIAS---NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRS----- 440 (483)
Q Consensus 383 ~L~~~~--------------~~~i~~---~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~----- 440 (483)
.|++.+ ++.+.. ...++++.+.++. .. +.+.+++++.||++....+.
T Consensus 277 ~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~-------~~----~~~~~~l~~~~i~~~~~s~G~~~sl 345 (404)
T 1e5e_A 277 YLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS-------GF----EGAKKLLDNLKLITLAVSLGGCESL 345 (404)
T ss_dssp HHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT-------HH----HHHHHHHHTCSSSEESSCCCSSSCE
T ss_pred HHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC-------CH----HHHHHHHHhCCCceeccCCCCccee
Confidence 665442 222221 1237788887742 11 12334566778854432111
Q ss_pred ----ccc-c----------CCC-CCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567 441 ----MLD-K----------CRL-PVGIRLFVSAAHSEADLVKACESLKRISAVVLRD 481 (483)
Q Consensus 441 ----~~~-~----------~~~-~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~ 481 (483)
... + ... +..||+++.. ||++++++.|+++++.++..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~~~~~ 398 (404)
T 1e5e_A 346 IQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDALLRS 398 (404)
T ss_dssp EECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHHHCC
T ss_pred eecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHHHHHh
Confidence 000 0 011 2449999976 89999999999999887753
No 152
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.94 E-value=1.1e-26 Score=234.65 Aligned_cols=324 Identities=10% Similarity=0.059 Sum_probs=221.0
Q ss_pred CeeEEEeecCCCCCC----CCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh-CC----CCEEE--ec
Q 011567 108 GKEVVNFASANYLGL----IGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-GT----PDSIL--YS 176 (483)
Q Consensus 108 G~~~id~~s~~~lG~----~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~-g~----e~~i~--~~ 176 (483)
|++++||+++.|++. ..+|.+.+++.+++++.... .|+......++++.+++++ +. ++.++ ++
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~ 98 (394)
T 2ay1_A 25 RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTK------TYAGLSGEPEFQKAMGELILGDGLKSETTATLATV 98 (394)
T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCC------CCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEE
T ss_pred CccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccC------CCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecC
Confidence 456899999976433 24789999999888752111 1222233567888888886 43 45666 78
Q ss_pred ccHHHHHhhhhhhcc--CCcEEEEcCCchhHHHhHhhhcCCeEEEecC---C----CHHHHHHHHHHhhhhhhhccCccE
Q 011567 177 YGLSTMFSAIPCFCK--KGDLIVADEGVHWGIQNGLYLSRSTVVYFKH---N----DMDSLRNTLERVTADNKRAKKLRR 247 (483)
Q Consensus 177 sG~~a~~~ai~~~~~--~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~---~----d~~~Le~~l~~~~~~~~~~~~~~~ 247 (483)
+|++|+..+++++.. +||.|++..+.|.++...+...|.+++.++. + |+++|++.+++... .++
T Consensus 99 g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~-------~~~ 171 (394)
T 2ay1_A 99 GGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKK-------GDM 171 (394)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCT-------TCE
T ss_pred CchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCC-------CCE
Confidence 889999999887764 8898888888888888888888988888876 3 78888888865311 257
Q ss_pred EEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-cccc-CCCCCceeEEEccccccccCCC
Q 011567 248 YIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHC-GVPVDKIDIVTAAMGHALATEG 322 (483)
Q Consensus 248 ~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~-~v~~~~~Di~~~s~~K~lg~~G 322 (483)
+++++.+++++|.+.| +++|+++|++||+++|+||+|+.+..+..+.+. ...+ ...+ .+++++|+||++|..|
T Consensus 172 ~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~s~sK~~~~~G 249 (394)
T 2ay1_A 172 VLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIP--EVLIAASCSKNFGIYR 249 (394)
T ss_dssp EEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCS--SEEEEEECTTTTTCGG
T ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCC--CEEEEEeccCCCcCcC
Confidence 7888899999999987 678999999999999999999875443100111 1111 1111 2577899999998667
Q ss_pred ---ceeec---cHHHHHHHHhc---CCceeecCCCcHHHHHHHHHHHHHH-------hcCcHHHHHHHHHHHHHHHhhcc
Q 011567 323 ---GFCTG---SARVVDHQRLS---SSGYVFSASLPPYLASAAITAIDVL-------EENPDLITKLKKNTAILRTGLSD 386 (483)
Q Consensus 323 ---G~i~~---~~~~~~~~~~~---~~~~~fs~~~~p~~~aaa~~al~~l-------~~~~~~~~~l~~~~~~l~~~L~~ 386 (483)
||+++ ++++++.+... .....++. .+++.++++.++++.. +..+++.++++++.+++.+.|++
T Consensus 250 ~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 328 (394)
T 2ay1_A 250 ERTGCLLALCADAATRELAQGAMAFLNRQTYSF-PPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRD 328 (394)
T ss_dssp GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSS-CCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEeCCHHHHHHHHHHHHHHHhhhcCC-CChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88876 66554432211 00112222 3566667777777643 12245778888889999988877
Q ss_pred CC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHH
Q 011567 387 IH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEAD 463 (483)
Q Consensus 387 ~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~ed 463 (483)
+. ++.+..+..+.++++.+. . ..+ ..+++++||.+.+ ++|++++ .+|++|
T Consensus 329 ~~~~~~~~~~~~~~g~~~~~~~~--------~----~~~-~~~l~~~gi~v~~-------------~~Ris~~-~~~~~~ 381 (394)
T 2ay1_A 329 LSGSDRFGFVAEHRGMFSRLGAT--------P----EQV-KRIKEEFGIYMVG-------------DSRINIA-GLNDNT 381 (394)
T ss_dssp HHTSSTTTHHHHCCSSEEECCCC--------H----HHH-HHHHHHHCEECCT-------------TCEEEGG-GCCTTT
T ss_pred cCCCCCeeEEcCCceEEEeeCCC--------H----HHH-HHHHHhCCEEecC-------------CCeEEee-cCCHhh
Confidence 52 355544434666655441 1 123 3455566998863 3799988 479999
Q ss_pred HHHHHHHHHHH
Q 011567 464 LVKACESLKRI 474 (483)
Q Consensus 464 i~~~~~~l~~~ 474 (483)
+++++++|+++
T Consensus 382 i~~~~~~l~~~ 392 (394)
T 2ay1_A 382 IPILARAIIEV 392 (394)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999999875
No 153
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.94 E-value=2.5e-26 Score=232.17 Aligned_cols=325 Identities=15% Similarity=0.107 Sum_probs=218.4
Q ss_pred CCeeEEEeecCCCCCC----CCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh---C-----CCCEEE
Q 011567 107 SGKEVVNFASANYLGL----IGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL---G-----TPDSIL 174 (483)
Q Consensus 107 ~G~~~id~~s~~~lG~----~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~---g-----~e~~i~ 174 (483)
.|+++|||+++.|++. ..+|.+.+++.+++++.... .|+......++++.+++++ + .++.++
T Consensus 24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~------~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~ 97 (396)
T 2q7w_A 24 ERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTK------NYLGIDGIPEFGRCTQELLFGKGSALINDKRART 97 (396)
T ss_dssp ----CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCC------CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred CCCCceecccccccCCCCCccCcHHHHHHHHhhcCccccc------CCCCCCCCHHHHHHHHHHHhcCCCCccccccEEE
Confidence 3578999999976543 24689999999888763221 2333333567888888887 2 345665
Q ss_pred --ecccHHHHHhhhhhhc--cCCcEEEEcCCchhHHHhHhhhcCCeEEEecC---C----CHHHHHHHHHHhhhhhhhcc
Q 011567 175 --YSYGLSTMFSAIPCFC--KKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH---N----DMDSLRNTLERVTADNKRAK 243 (483)
Q Consensus 175 --~~sG~~a~~~ai~~~~--~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~---~----d~~~Le~~l~~~~~~~~~~~ 243 (483)
+++|++|+..+++++. .+||.|+++.+.|..+...++..|.+++.++. + |+++|++.+++...
T Consensus 98 ~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~------ 171 (396)
T 2q7w_A 98 AQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQA------ 171 (396)
T ss_dssp EEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCT------
T ss_pred EecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCC------
Confidence 7888899999987764 58999999999998888888888999888876 4 78888887754221
Q ss_pred CccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccCCCCCceeEEEcccccccc
Q 011567 244 KLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALA 319 (483)
Q Consensus 244 ~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg 319 (483)
.++++++..+++++|.+.| +++|+++|++||+++|+||+|+.+..+....+. ...+... .+.+++++|+||++|
T Consensus 172 -~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~ 249 (396)
T 2q7w_A 172 -GDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAM-HKELIVASSYSXNFG 249 (396)
T ss_dssp -TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHH-CSCEEEEEECTTTTT
T ss_pred -CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhc-CCcEEEEEecccccc
Confidence 2677888888899999887 678999999999999999999875443100111 1112111 123688999999998
Q ss_pred CCC---ceeec---cH----HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH-------hcCcHHHHHHHHHHHHHHH
Q 011567 320 TEG---GFCTG---SA----RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL-------EENPDLITKLKKNTAILRT 382 (483)
Q Consensus 320 ~~G---G~i~~---~~----~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l-------~~~~~~~~~l~~~~~~l~~ 382 (483)
..| ||+++ ++ ++++.+.... ...++ ..+++.++++.++++.. +..++..++++++.+++.+
T Consensus 250 ~~G~riG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 327 (396)
T 2q7w_A 250 LYNERVGACTLVAADSETVDRAFSQMKAAI-RANYS-NPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVN 327 (396)
T ss_dssp CGGGCCEEEEEECSSHHHHHHHHHHHHHHH-HTTTS-SCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHH
T ss_pred ccccccceEEEEcCCHHHHHHHHHHHHHHH-hhccC-CCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666 88875 55 3444443211 11222 23677777777776532 1223456778888899999
Q ss_pred hhccCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCC
Q 011567 383 GLSDIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAH 459 (483)
Q Consensus 383 ~L~~~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~ 459 (483)
.|+++. ++.+..+..+.++++.+. . +.+..+++++||.+.+ ++||+++. .
T Consensus 328 ~L~~~~~~~~~~~~~~~~~~~~~~~~~--------~-----~~~~~~l~~~gv~v~~-------------~~Ris~~~-~ 380 (396)
T 2q7w_A 328 TLQEKGANRDFSFIIKQNGMFSFSGLT--------K-----EQVLRLREEFGVYAVA-------------SGRVNVAG-M 380 (396)
T ss_dssp HHHHTTCCSCCTHHHHCCSSEEECCCC--------H-----HHHHHHHHHHCEECCT-------------TCEEEGGG-C
T ss_pred HHHhcCCCCCcceecCCCceEEEecCC--------H-----HHHHHHHHhcCeeecC-------------CceEEEee-c
Confidence 998763 255544334555444331 1 1233456566998863 37999985 4
Q ss_pred CHHHHHHHHHHHHHH
Q 011567 460 SEADLVKACESLKRI 474 (483)
Q Consensus 460 t~edi~~~~~~l~~~ 474 (483)
|++++++++++|+++
T Consensus 381 ~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 381 TPDNMAPLCEAIVAV 395 (396)
T ss_dssp CTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999999875
No 154
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.94 E-value=7.5e-25 Score=224.03 Aligned_cols=288 Identities=13% Similarity=0.085 Sum_probs=213.0
Q ss_pred hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCCCHHHH
Q 011567 153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSL 228 (483)
Q Consensus 153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~L 228 (483)
.+...+++++|++++|.++++++++|++|+..+++++.++||.|++....|.++.. .+...|.++..++.+|+++|
T Consensus 113 ~~~~~~l~~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l 192 (445)
T 1qgn_A 113 NPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGAL 192 (445)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHH
T ss_pred ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHH
Confidence 46788999999999999999999999999999999999999999988888887665 35567889999999999999
Q ss_pred HHHHHHhhhhhhhccCcc-EEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCce
Q 011567 229 RNTLERVTADNKRAKKLR-RYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI 307 (483)
Q Consensus 229 e~~l~~~~~~~~~~~~~~-~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~ 307 (483)
++.+++ ++ ++|++|+++|++|.+.|+++|.++|++||+++|+||+|+.+.... ... ..+
T Consensus 193 ~~ai~~----------~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~-------~~~---~g~ 252 (445)
T 1qgn_A 193 ELALNQ----------KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQK-------ALA---LGA 252 (445)
T ss_dssp HHHHHH----------SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC-------TTT---TTC
T ss_pred HHHhcc----------CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC-------ccc---cCC
Confidence 988864 25 899999999999999999999999999999999999998654321 122 235
Q ss_pred eEEEccccccccCC----CceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Q 011567 308 DIVTAAMGHALATE----GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG 383 (483)
Q Consensus 308 Di~~~s~~K~lg~~----GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~ 383 (483)
|+++.|++|.+|+. +|++++++++++.++... ..+++.++|..+..+..+++.+. ..+++..++.+++.+.
T Consensus 253 Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~--~~~g~~~~~~~a~~~~~~l~~l~---~r~~~~~~~a~~l~~~ 327 (445)
T 1qgn_A 253 DLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLH--HILGGALNPNAAYLIIRGMKTLH---LRVQQQNSTALRMAEI 327 (445)
T ss_dssp SEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHH--HHHCCCCCHHHHHHHHHHGGGHH---HHHHHHHHHHHHHHHH
T ss_pred EEEEECCcccccccccceEEEEEECHHHHHHHHHHH--HHhCCCCCHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHH
Confidence 89999999999854 789999998888765432 23445567877776666665442 3566777788889999
Q ss_pred hccCCCc-eeecC----------------CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc----
Q 011567 384 LSDIHGL-SIASN----------------PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML---- 442 (483)
Q Consensus 384 L~~~~~~-~i~~~----------------~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~---- 442 (483)
|++.+++ .+..+ ..++++.+.++.. .....++.+. ++..++.++.+...++
T Consensus 328 L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~-------~~~~~~~l~~-l~~~~i~~s~G~~~sl~~~p 399 (445)
T 1qgn_A 328 LEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD-------LLTTAKFVDA-LKIPYIAPSFGGCESIVDQP 399 (445)
T ss_dssp HHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC-------HHHHHHHHHH-CSSSEECSCCCSSSCEEECH
T ss_pred HhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCC-------HHHHHHHHHh-CCCceEeccCCCCceeeecc
Confidence 9887766 33322 2577899998531 1123344543 3322454443332211
Q ss_pred -------------ccCCC-CCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 443 -------------DKCRL-PVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 443 -------------~~~~~-~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
..... +..||+++. .||++.+++.|++++..
T Consensus 400 ~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 400 AIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDS 444 (445)
T ss_dssp HHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence 00111 245999986 47899999999998764
No 155
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.94 E-value=8.9e-25 Score=220.35 Aligned_cols=285 Identities=13% Similarity=0.126 Sum_probs=209.1
Q ss_pred HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHHHH
Q 011567 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSLR 229 (483)
Q Consensus 154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~Le 229 (483)
+...+++++|++++|.++.+++++|++|+..+++++.++||.|++..+.|.++...+ +..|.++..++.+|+++|+
T Consensus 52 ~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~ 131 (386)
T 1cs1_A 52 PTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALR 131 (386)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHH
T ss_pred ccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCCCHHHHH
Confidence 567899999999999989999999999999999999999999998888888765543 5668889999999999999
Q ss_pred HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567 230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI 309 (483)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di 309 (483)
+.+++ ++++|+++++++++|.+.|+++|+++|++||+++|+||+|+.+.... . .. .++|+
T Consensus 132 ~~i~~----------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~---~----~~---~~~di 191 (386)
T 1cs1_A 132 AALAE----------KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQN---P----LA---LGADL 191 (386)
T ss_dssp HHHHT----------CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC---G----GG---GTCSE
T ss_pred Hhhcc----------CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC---c----cc---cCceE
Confidence 88863 26788899999999999999999999999999999999998765431 1 11 23489
Q ss_pred EEccccccccCC----CceeeccH-HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhh
Q 011567 310 VTAAMGHALATE----GGFCTGSA-RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL 384 (483)
Q Consensus 310 ~~~s~~K~lg~~----GG~i~~~~-~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L 384 (483)
++.|++|+++.. ||++++++ ++++.++....+ ++.+.+|..++++.++++.+ ++..+++.++.+.+.+.|
T Consensus 192 ~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l~~~l 266 (386)
T 1cs1_A 192 VLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANN--IGVTGGAFDSYLLLRGLRTL---VPRMELAQRNAQAIVKYL 266 (386)
T ss_dssp EEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHH--HTCBCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHH
T ss_pred EEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHh--cCCCCCHHHHHHHHhcccHH---HHHHHHHHHHHHHHHHHH
Confidence 999999999743 38888875 787777644322 23446788777776666544 345677778888888888
Q ss_pred ccCCCceee--c---------------CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecc--------
Q 011567 385 SDIHGLSIA--S---------------NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKR-------- 439 (483)
Q Consensus 385 ~~~~~~~i~--~---------------~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~-------- 439 (483)
++++.+.-. . ...++++.+.+++. ..++.. .|++.||+++...+
T Consensus 267 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~l~~~gi~~~~~~~g~~~sl~~ 335 (386)
T 1cs1_A 267 QTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD----------EQTLRR-FLGGLSLFTLAESLGGVESLIS 335 (386)
T ss_dssp TTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC----------HHHHHH-HHHTCSSSEEBSCCCSSSCEEE
T ss_pred hcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC----------HHHHHH-HHHhCCcceEcccCCCcceeee
Confidence 775433211 0 12478888887421 113344 45667998864211
Q ss_pred -ccc-ccC-----------CCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567 440 -SML-DKC-----------RLPVGIRLFVSAAHSEADLVKACESLKRI 474 (483)
Q Consensus 440 -~~~-~~~-----------~~~~~lRi~~~~~~t~edi~~~~~~l~~~ 474 (483)
+.. .++ ..+..||++++...++++++.+.++|+++
T Consensus 336 ~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 336 HAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp EGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 100 000 11245999999988888888888877764
No 156
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.94 E-value=4.9e-25 Score=229.77 Aligned_cols=346 Identities=12% Similarity=0.103 Sum_probs=221.8
Q ss_pred EEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHH----HHHHHHHHhhhCC---CCEEEecccHHHHHh
Q 011567 112 VNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVH----LDCEARIAKFLGT---PDSILYSYGLSTMFS 184 (483)
Q Consensus 112 id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~----~~l~~~La~~~g~---e~~i~~~sG~~a~~~ 184 (483)
+++.+..||++...+....++.+.+..+..+. ....++..+.. .++.++|++++|. +..+++++|++|+..
T Consensus 96 ~~~~~~~yl~~~~~~~~~~~v~~~~~~~~~n~--~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~ 173 (497)
T 2qma_A 96 IFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQ--SMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQM 173 (497)
T ss_dssp CCTTSTTBCSSSCCCCBHHHHHHHHHHHHHCC--CTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHH
T ss_pred CCCCCCCeeEeCCCCCcHHHHHHHHHHHhhcc--cccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHH
Confidence 45556677777655555555444443332222 12234443444 4445559999986 346677899999998
Q ss_pred hhhhh----c---------cC------Cc-EEEEcCCchhHHHhHhhhcCC---eEEEecCC-----CHHHHHHHHHHhh
Q 011567 185 AIPCF----C---------KK------GD-LIVADEGVHWGIQNGLYLSRS---TVVYFKHN-----DMDSLRNTLERVT 236 (483)
Q Consensus 185 ai~~~----~---------~~------gd-iI~~~~~~h~s~~~g~~~s~~---~v~~~~~~-----d~~~Le~~l~~~~ 236 (483)
++.+. . ++ ++ .|+++...|.++.+++...+. +++.++.+ |+++|++.+++..
T Consensus 174 al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~ 253 (497)
T 2qma_A 174 GLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAK 253 (497)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHH
Confidence 87763 2 12 46 899999999999999988765 78888876 8999999987642
Q ss_pred hhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccc
Q 011567 237 ADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGH 316 (483)
Q Consensus 237 ~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K 316 (483)
.. ...+.+|++....+++|.+.|+++|+++|++||+++|+|++|+++.+....+. ...++ ..+|+++.|++|
T Consensus 254 ~~----~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~--~~~gi--~~~D~i~~s~hK 325 (497)
T 2qma_A 254 AE----GLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKS--RLKGV--ERAHSISVDFHK 325 (497)
T ss_dssp HT----TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGG--GGTTG--GGCSEEEEETTT
T ss_pred HC----CCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchH--hhcCc--ccCCEEEEcchh
Confidence 21 01133667777777889999999999999999999999999998765322111 12344 345899999999
Q ss_pred cccCCC--ceee-ccHHHHHHHHhcCCceeecCC---CcHHH----------HHHHHHHHHHHhc--CcHHHHHHHHHHH
Q 011567 317 ALATEG--GFCT-GSARVVDHQRLSSSGYVFSAS---LPPYL----------ASAAITAIDVLEE--NPDLITKLKKNTA 378 (483)
Q Consensus 317 ~lg~~G--G~i~-~~~~~~~~~~~~~~~~~fs~~---~~p~~----------~aaa~~al~~l~~--~~~~~~~l~~~~~ 378 (483)
+++.+. |+++ .++..++.+.. ...|.++.. .++.. +.+..++++.+.. ..+++++..++++
T Consensus 326 ~l~~p~~~G~l~~~~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~ 404 (497)
T 2qma_A 326 LFYQTISCGALLVNDKSNFKFLLH-HADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTL 404 (497)
T ss_dssp TTCCCSSCEEEEESCGGGGGGGCC---------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ccCCCcceEEEEEeCHHHHHHhcC-CchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 987432 5554 44554444332 223332221 11111 1122234554421 2357888899999
Q ss_pred HHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc-cC
Q 011567 379 ILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SA 457 (483)
Q Consensus 379 ~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~-~~ 457 (483)
++.+.|++++++++..++..+++.+++.+... .......++.+.+.++ |+.+.+..... ....+|+++ +.
T Consensus 405 ~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~l~~~l~~~l~~~-G~~~~~~~~~~-----g~~~lRis~~~~ 475 (497)
T 2qma_A 405 EVADMIRTNDQFELLAEPSLSTVLFRATHETA---DLDELNKALRLEALTR-GIAVLGETIVD-----GKTALKFTILNP 475 (497)
T ss_dssp HHHHHHHTCTTEEECSCCSSSEEEEEECCSSS---CHHHHHHHHHHHHHHH-TSCBCEEEEET-----TEEEEEEECCCT
T ss_pred HHHHHHhhCCCeEEEcCCCceEEEEEEcCCcc---CHHHHHHHHHHHHHhC-CCEEEEeeEEC-----CEEEEEEEecCC
Confidence 99999999889988766678899998854321 1122344666666655 77764321110 013499998 88
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 011567 458 AHSEADLVKACESLKRISAV 477 (483)
Q Consensus 458 ~~t~edi~~~~~~l~~~~~~ 477 (483)
.+|++|++++++.|++++++
T Consensus 476 ~~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 476 CLTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999998765
No 157
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.94 E-value=8.4e-26 Score=229.65 Aligned_cols=327 Identities=9% Similarity=0.047 Sum_probs=224.5
Q ss_pred CCeeEEEeecCCCCCCC----CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh-CC-------CCEEE
Q 011567 107 SGKEVVNFASANYLGLI----GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-GT-------PDSIL 174 (483)
Q Consensus 107 ~G~~~id~~s~~~lG~~----~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~-g~-------e~~i~ 174 (483)
+|+.++||+++.++... ..|.+.+++.+++++.+.. ..|+......++++.+++++ +. ++.++
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-----~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~ 102 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLN-----HEYLPILGLAEFRTCASRLALGDDSPALQEKRVGG 102 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCC-----CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhc-----cCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEE
Confidence 35678999999765432 3478888888877331110 01222233467888888887 42 56777
Q ss_pred --ecccHHHHHhhhh--hhccCC-----cEEEEcCCchhHHHhHhhhcCCe-EEEecC---C----CHHHHHHHHHHhhh
Q 011567 175 --YSYGLSTMFSAIP--CFCKKG-----DLIVADEGVHWGIQNGLYLSRST-VVYFKH---N----DMDSLRNTLERVTA 237 (483)
Q Consensus 175 --~~sG~~a~~~ai~--~~~~~g-----diI~~~~~~h~s~~~g~~~s~~~-v~~~~~---~----d~~~Le~~l~~~~~ 237 (483)
+++|++|+..+++ .+.++| |.|++..+.|.++...+...|.+ ++.++. + |+++|++.+++...
T Consensus 103 ~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 182 (412)
T 1ajs_A 103 VQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPE 182 (412)
T ss_dssp EEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCT
T ss_pred EECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhCCC
Confidence 8888999998864 445688 88888888888888888888988 887776 3 68888888765322
Q ss_pred hhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCC---Ccc-ccccCCCCCceeEE
Q 011567 238 DNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSG---RGL-TEHCGVPVDKIDIV 310 (483)
Q Consensus 238 ~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G---~g~-~~~~~v~~~~~Di~ 310 (483)
++++|++..+++++|.+.| +++|+++|++||+++|+||+|+....+ | ... ...+... .+.+++
T Consensus 183 -------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~--~~~~~~~~~~~~~~~-~~~~i~ 252 (412)
T 1ajs_A 183 -------FSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASG--NLEKDAWAIRYFVSE-GFELFC 252 (412)
T ss_dssp -------TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTS--CHHHHTHHHHHHHHT-TCCEEE
T ss_pred -------CcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCC--cccccchHHHHHhcc-CCcEEE
Confidence 2577777888889999877 678999999999999999998754332 2 111 1212111 122588
Q ss_pred EccccccccCCC---ceeec---cHHH----HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-------cCcHHHHHH
Q 011567 311 TAAMGHALATEG---GFCTG---SARV----VDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-------ENPDLITKL 373 (483)
Q Consensus 311 ~~s~~K~lg~~G---G~i~~---~~~~----~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-------~~~~~~~~l 373 (483)
+.|+||++|+.| ||+++ ++++ ++.++.. ....++. .+++.++++.++|+... ..+++++++
T Consensus 253 ~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (412)
T 1ajs_A 253 AQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKI-VRVTWSN-PPAQGARIVARTLSDPELFHEWTGNVKTMADRI 330 (412)
T ss_dssp EEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHH-HHTTTSS-CCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred EEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHH-HhcccCC-CChHHHHHHHHHHcCcchhHHHHHHHHHHHHHH
Confidence 899999999766 89888 7774 3433321 1122222 36666777777776432 224578888
Q ss_pred HHHHHHHHHhhccCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCc
Q 011567 374 KKNTAILRTGLSDIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVG 450 (483)
Q Consensus 374 ~~~~~~l~~~L~~~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~ 450 (483)
+++.+++.+.|+++. ++.+..+..+.+.++.+. .+.+..+++++||++.+ +
T Consensus 331 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~gv~v~~-------------~ 384 (412)
T 1ajs_A 331 LSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN-------------PKQVEYLINQKHIYLLP-------------S 384 (412)
T ss_dssp HHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC-------------HHHHHHHHHTTCEECCT-------------T
T ss_pred HHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC-------------HHHHHHHHHhCCEEecC-------------C
Confidence 999999999998863 366554434555554331 12345566677999863 2
Q ss_pred eEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 451 IRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 451 lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
+|++++. +|++++++++++|++++++
T Consensus 385 ~Ris~~~-~~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 385 GRINMCG-LTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp SEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred cEEEeee-CCHHHHHHHHHHHHHHHHh
Confidence 7999884 5999999999999998865
No 158
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.94 E-value=3.2e-25 Score=222.45 Aligned_cols=307 Identities=13% Similarity=0.183 Sum_probs=216.0
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-ccCCcEEEEcCCchh
Q 011567 126 EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVHW 204 (483)
Q Consensus 126 p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~~~h~ 204 (483)
|++.+++.+.+... .|+..+...++++.+++++|.++++++++|++|+..+++++ .++||.|+++...|.
T Consensus 17 ~~~~~a~~~~~~~~---------~~~~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~ 87 (373)
T 3frk_A 17 YEIKFKFEEIYKRN---------WFILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFI 87 (373)
T ss_dssp HHHHHHHHHHHHHT---------CCSSSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCT
T ss_pred HHHHHHHHHHHHCC---------CccCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcH
Confidence 55666666666552 23455788999999999999999999999999999999999 899999999999999
Q ss_pred HHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEE
Q 011567 205 GIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRV 278 (483)
Q Consensus 205 s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~l 278 (483)
++..++...|.+++.++.+ |+++|++.+++ ++++|+ +.+++|.+.|+++|.++|++||+++
T Consensus 88 ~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~----------~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~l 154 (373)
T 3frk_A 88 ATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITE----------KTKAII---AVHLYGQPADMDEIKRIAKKYNLKL 154 (373)
T ss_dssp HHHHHHHHHSCEEEEECEETTTTEECGGGTGGGCCT----------TEEEEE---EECCTTCCCCHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHcCCEEEEEeccccccCcCHHHHHHhcCC----------CCeEEE---EECCCcCcccHHHHHHHHHHcCCEE
Confidence 9999999999999888765 77888776643 256666 3457899999999999999999999
Q ss_pred EEeCccccccccCCCCccccccCCCCCceeEEEcccc--ccccC--CCceeecc-HHHHHHHHh---cCCc-------ee
Q 011567 279 FLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMG--HALAT--EGGFCTGS-ARVVDHQRL---SSSG-------YV 343 (483)
Q Consensus 279 i~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~--K~lg~--~GG~i~~~-~~~~~~~~~---~~~~-------~~ 343 (483)
|+||+|+.|.. ..++ ..+.. .|+++.|++ |++++ .||+++++ +++.+.++. .+.. ..
T Consensus 155 i~D~a~~~g~~-~~~~----~~~~~---~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g 226 (373)
T 3frk_A 155 IEDAAQAHGSL-YKGM----KVGSL---GDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKG 226 (373)
T ss_dssp EEECTTCTTCE-ETTE----ETTSS---SSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCC
T ss_pred EEECCcccCCE-ECCE----ecccc---ccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCcccCCcccccc
Confidence 99999997654 2122 22322 278888876 99975 46887765 456555432 1111 11
Q ss_pred ecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCC---C--CEEEEEecCCCCCchhhHHH
Q 011567 344 FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPE---S--PIVFLILEKSTGSMKNDLQL 418 (483)
Q Consensus 344 fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~---~--~i~~l~l~~~~~~~~~~~~~ 418 (483)
+...++++.++.+...++.+ ++..++.+++.+++++.|.+++ +.+...+. . ..+.+... +
T Consensus 227 ~~~~~~~~~aa~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~--------~--- 291 (373)
T 3frk_A 227 FNSRLDELQAGFLRVKLKYL---DKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRSE--------K--- 291 (373)
T ss_dssp CBCCCCHHHHHHHHHHHHTH---HHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEES--------S---
T ss_pred ccCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEeC--------C---
Confidence 23346788887776666544 3477888899999999998874 55432211 1 22333331 1
Q ss_pred HHHHHHHHHHhCCEEEEeeccccccc-----------CCCC-------CceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 419 LEDIADWALKEDGVFVVTSKRSMLDK-----------CRLP-------VGIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 419 ~~~i~~~~l~~~Gv~v~~~~~~~~~~-----------~~~~-------~~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
..++.+. |.++||.+++........ ...| ..||++++..+|++||++++++|+++..+.
T Consensus 292 ~~~l~~~-L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~~ 368 (373)
T 3frk_A 292 RDELQKY-LNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLEH 368 (373)
T ss_dssp HHHHHHH-HHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC---
T ss_pred HHHHHHH-HHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhhh
Confidence 2345665 455699988654111100 0011 249999999999999999999999876543
No 159
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.94 E-value=1.4e-24 Score=217.39 Aligned_cols=315 Identities=13% Similarity=0.120 Sum_probs=219.3
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh---ccCCcEEEEcC
Q 011567 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF---CKKGDLIVADE 200 (483)
Q Consensus 124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~---~~~gdiI~~~~ 200 (483)
.+|++.+++.+++++. . ++..+...++++.|++++|.++++++++|++|+..+++++ .++||.|+++.
T Consensus 11 ~~~~v~~a~~~~~~~~-~--------~~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~ 81 (375)
T 2fnu_A 11 LDKEDKKAVLEVLNSK-Q--------LTQGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTP 81 (375)
T ss_dssp CCHHHHHHHHHHHTSS-C--------CSSSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECS
T ss_pred CCHHHHHHHHHHHHcC-c--------ccCChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECC
Confidence 5789999999998752 1 1123567899999999999988888899999999999999 88999999999
Q ss_pred CchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcC
Q 011567 201 GVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYR 275 (483)
Q Consensus 201 ~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~ 275 (483)
+.|.++...+...|.+++.++.+ |+++|++.+++ .+++|++.+. +|.+.|+++|.++|++||
T Consensus 82 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~----------~~~~v~~~~~---tG~~~~l~~i~~l~~~~~ 148 (375)
T 2fnu_A 82 ISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLINE----------RTKAIVSVDY---AGKSVEVESVQKLCKKHS 148 (375)
T ss_dssp SSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCCT----------TEEEEEEECG---GGCCCCHHHHHHHHHHHT
T ss_pred CccHhHHHHHHHCCCEEEEeccCCCCCCCHHHHHhhcCc----------CceEEEEeCC---cCCccCHHHHHHHHHHcC
Confidence 99999999999899999888764 66666655532 2455555444 699999999999999999
Q ss_pred cEEEEeCccccccccCCCCccccccCCCCCceeEEEcccc--ccccCCCceeec-c-HHHHHHHHhcC-Cc---------
Q 011567 276 FRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMG--HALATEGGFCTG-S-ARVVDHQRLSS-SG--------- 341 (483)
Q Consensus 276 ~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~--K~lg~~GG~i~~-~-~~~~~~~~~~~-~~--------- 341 (483)
+++|+||+|++|.... + ...+..+ |+++.|++ |++|+..|+++. + +++++.++... .+
T Consensus 149 ~~li~D~a~~~~~~~~-~----~~~~~~~---~i~~~s~s~~K~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (375)
T 2fnu_A 149 LSFLSDSSHALGSEYQ-N----KKVGGFA---LASVFSFHAIKPITTAEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEG 220 (375)
T ss_dssp CEEEEECTTCTTCEET-T----EETTSSS---SEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTTEEESSSSCE
T ss_pred CEEEEECccccCCeEC-C----eeccccC---CeEEEeCCCCCCccccCceEEEeCCHHHHHHHHHHHhcCCcccccccc
Confidence 9999999999875431 1 1222212 56666777 999862255443 3 66776654321 11
Q ss_pred ----eeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCC----C-CCEEEEEecCCCCCc
Q 011567 342 ----YVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP----E-SPIVFLILEKSTGSM 412 (483)
Q Consensus 342 ----~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~----~-~~i~~l~l~~~~~~~ 412 (483)
+.+...++++.++++...++.+ ++..++.+++.+++.+.|++++++.+..+. . ..++++.++...
T Consensus 221 ~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 294 (375)
T 2fnu_A 221 EVKSIGHNFRLNEIQSALGLSQLKKA---PFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKF--- 294 (375)
T ss_dssp EESSCCCBCCCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGG---
T ss_pred ccccccccCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccc---
Confidence 1122245777777666554433 357888999999999999998788775431 2 234566664210
Q ss_pred hhhHHHHHHHHHHHHHhCCEEEEeecccccc---------cCCCC-------CceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567 413 KNDLQLLEDIADWALKEDGVFVVTSKRSMLD---------KCRLP-------VGIRLFVSAAHSEADLVKACESLKRISA 476 (483)
Q Consensus 413 ~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~---------~~~~~-------~~lRi~~~~~~t~edi~~~~~~l~~~~~ 476 (483)
. ....++.+.+ .++||.+.....+... ....| ..||++++..+|++|+++++++|+++++
T Consensus 295 -~--~~~~~l~~~L-~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~ 370 (375)
T 2fnu_A 295 -F--TCKKLILESL-HKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFE 370 (375)
T ss_dssp -G--GGHHHHHHHH-HHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred -c--chHHHHHHHH-HHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence 0 0134566654 4569998832211100 00011 3499999999999999999999999887
Q ss_pred HH
Q 011567 477 VV 478 (483)
Q Consensus 477 ~~ 478 (483)
++
T Consensus 371 ~~ 372 (375)
T 2fnu_A 371 SF 372 (375)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 160
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.94 E-value=1.6e-24 Score=220.79 Aligned_cols=323 Identities=14% Similarity=0.181 Sum_probs=224.9
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-ccCCcEEEEcCCch
Q 011567 125 HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVH 203 (483)
Q Consensus 125 ~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~~~h 203 (483)
+|++.+++.+++++...+..+ ...|..+...++++.+++++|.++.+++++|++|+..+++++ .++||.|+++.+.|
T Consensus 15 ~~~~~~a~~~~~~~~~~~~~~--~~~g~~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~ 92 (418)
T 2c81_A 15 SDRTRRKIEEVFQSNRWAISG--YWTGEESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIGEGDEVIVPSLTW 92 (418)
T ss_dssp CHHHHHHHHHHHHHTCCSTTS--BCCSSCCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSC
T ss_pred CHHHHHHHHHHHhcCCccccC--cccCCHHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCcc
Confidence 589999999999875333222 235666788999999999999998899999999999999999 89999999999999
Q ss_pred hHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcE
Q 011567 204 WGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFR 277 (483)
Q Consensus 204 ~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~ 277 (483)
.++..++...|.+++.++.+ |+++|++.+++ ++++|++++ ++|...++++|.++|++||++
T Consensus 93 ~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~----------~~~~v~~~~---~~G~~~~~~~i~~~~~~~~~~ 159 (418)
T 2c81_A 93 IATATAVLNVNALPVFVDVEADTYCIDPQLIKSAITD----------KTKAIIPVH---LFGSMANMDEINEIAQEHNLF 159 (418)
T ss_dssp THHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCT----------TEEEECCBC---CTTCCCCHHHHHHHHHHTTCE
T ss_pred HhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCC----------CCeEEEEeC---CcCCcccHHHHHHHHHHCCCE
Confidence 99999999999999888764 56666655432 256666543 579999999999999999999
Q ss_pred EEEeCcccccc-ccCCCCccccccCCCCCceeEEEccc--cccccC-CCceeec-cHHHHHHHHhc-CCc----------
Q 011567 278 VFLDESNSFGV-LGRSGRGLTEHCGVPVDKIDIVTAAM--GHALAT-EGGFCTG-SARVVDHQRLS-SSG---------- 341 (483)
Q Consensus 278 li~DEa~s~g~-lg~~G~g~~~~~~v~~~~~Di~~~s~--~K~lg~-~GG~i~~-~~~~~~~~~~~-~~~---------- 341 (483)
+|+||+|+.|. +. ++. .+.-. |+.+.|+ +|++|+ .||++++ ++++++.++.. ..+
T Consensus 160 li~D~a~~~~~~~~--~~~----~~~~~---~~~~~s~s~~K~~~~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 230 (418)
T 2c81_A 160 VIEDCAQSHGSVWN--NQR----AGTIG---DIGAFSCQQGKVLTAGEGGIIVTKNPRLFELIQQLRADSRVYCDDSSEL 230 (418)
T ss_dssp EEEECTTCTTCEET--TEE----TTSSS---SEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHHBTTEEECSCGGGC
T ss_pred EEEECcccccCccC--CEe----ccccc---ceEEEeccCCcccCCCCeEEEEECCHHHHHHHHHHHHhCcccccccccc
Confidence 99999999875 32 221 12111 4555566 999975 5688888 46776665421 111
Q ss_pred ---ee----------ecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCC------CEEE
Q 011567 342 ---YV----------FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPES------PIVF 402 (483)
Q Consensus 342 ---~~----------fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~------~i~~ 402 (483)
|. +...++++.++.....++.+ ++..++.+++.+++.+.|.+++++.+...+.+ .++.
T Consensus 231 ~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~---~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~ 307 (418)
T 2c81_A 231 MHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL---DDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYV 307 (418)
T ss_dssp CTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEE
T ss_pred ccchhhccccccccCcCCCcCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEE
Confidence 11 11124566555444444333 45778888899999999998888887633222 3555
Q ss_pred EEecCCCCCchhhHHHHHHHHHHHHHhCCEE---EEeeccccccc------------------------CCCC-------
Q 011567 403 LILEKSTGSMKNDLQLLEDIADWALKEDGVF---VVTSKRSMLDK------------------------CRLP------- 448 (483)
Q Consensus 403 l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~---v~~~~~~~~~~------------------------~~~~------- 448 (483)
+.+++.... .....++.+.+.++.||. +.+...+.... ...|
T Consensus 308 ~~~~~~~~~----~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (418)
T 2c81_A 308 FRFDPVKFG----GLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASG 383 (418)
T ss_dssp EEECGGGTT----TCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHH
T ss_pred EEEcccccc----ccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHh
Confidence 666420000 001235666544433899 87654321100 0111
Q ss_pred CceEEEccCCC-CHHHHHHHHHHHHHHHHHH
Q 011567 449 VGIRLFVSAAH-SEADLVKACESLKRISAVV 478 (483)
Q Consensus 449 ~~lRi~~~~~~-t~edi~~~~~~l~~~~~~~ 478 (483)
..||++++..+ |++|+++++++|+++++++
T Consensus 384 ~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 384 QSIVIHHAILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp HEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred CEEEecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence 25999999999 9999999999999988653
No 161
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.94 E-value=4.9e-25 Score=220.89 Aligned_cols=305 Identities=14% Similarity=0.180 Sum_probs=217.2
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-ccCCcEEEEcCCchhHH
Q 011567 128 LLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVHWGI 206 (483)
Q Consensus 128 i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~~~h~s~ 206 (483)
+.+++.+.+... .|+..+...++++.++++++.++++++++|++|+..+++++ .++||.|+++.+.|.++
T Consensus 21 ~~~~~~~~~~~~---------~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~ 91 (374)
T 3uwc_A 21 YLNDLREFIKTA---------DFTLGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIAS 91 (374)
T ss_dssp HHHHHHHHHHHT---------CCSSCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHH
T ss_pred HHHHHHHHHHcC---------CcccChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHH
Confidence 777777777653 23455778999999999999999999999999999999999 89999999999999999
Q ss_pred HhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEe
Q 011567 207 QNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLD 281 (483)
Q Consensus 207 ~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~D 281 (483)
...+...|.+++.++.+ |+++|++.+++ ++++|+ +.+++|.+.|+++|.++|++||+++|+|
T Consensus 92 ~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~----------~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D 158 (374)
T 3uwc_A 92 VGAIVQAGATPVLVDSENGYVIDPEKIEAAITD----------KTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVED 158 (374)
T ss_dssp HHHHHHTTCEEEEECBCTTSSBCGGGTGGGCCT----------TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHcCCEEEEEecCCCCCcCHHHHHHhCCC----------CceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEe
Confidence 99999999999998876 77777766533 256666 5567899999999999999999999999
Q ss_pred CccccccccCCCCccccccCCCCCceeEEEcccc--ccccC--CCceeecc-HHHHHHHHhcCC-c---------eeecC
Q 011567 282 ESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMG--HALAT--EGGFCTGS-ARVVDHQRLSSS-G---------YVFSA 346 (483)
Q Consensus 282 Ea~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~--K~lg~--~GG~i~~~-~~~~~~~~~~~~-~---------~~fs~ 346 (483)
|+|+.|..-. + +..+.. .|+++.|++ |++++ .||+++++ +++.+.++.... + ..+..
T Consensus 159 ~~~~~g~~~~-~----~~~~~~---~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (374)
T 3uwc_A 159 ACQTILGRIN-D----KFVGSW---GQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINC 230 (374)
T ss_dssp CTTCTTCEET-T----EETTSS---SSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBC
T ss_pred CCCccCceeC-C----eecccc---ccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCccccCccccccccC
Confidence 9998764311 1 122222 288888976 99985 36777764 456655443211 1 11222
Q ss_pred CCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCC-ceeecCCCC-----CEEEEEecCCCCCchhhHHHHH
Q 011567 347 SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHG-LSIASNPES-----PIVFLILEKSTGSMKNDLQLLE 420 (483)
Q Consensus 347 ~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~-~~i~~~~~~-----~i~~l~l~~~~~~~~~~~~~~~ 420 (483)
.++++.++.+...++.+ ++..++.+++.+++++.|.++++ +.+...+.. ..+.+... + ..
T Consensus 231 ~~~~~~aa~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~ 296 (374)
T 3uwc_A 231 RMDTIQAVIANRLMNQL---ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVK--------Y---RD 296 (374)
T ss_dssp BCCHHHHHHHHHHGGGH---HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEET--------T---HH
T ss_pred CCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcC--------C---HH
Confidence 35677776665554433 34778888999999999998866 665422211 12333321 1 23
Q ss_pred HHHHHHHHhCCEEEEeecccccc-----------cCCCC-------CceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 421 DIADWALKEDGVFVVTSKRSMLD-----------KCRLP-------VGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 421 ~i~~~~l~~~Gv~v~~~~~~~~~-----------~~~~~-------~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
++.+. |.++||.+++.....+. ....| ..||++++..+|++||++++++|++++++
T Consensus 297 ~l~~~-L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 297 QLFQY-LKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp HHHHH-HHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-HHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 56665 44569998876411110 00011 34999999999999999999999998764
No 162
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.94 E-value=3.1e-25 Score=218.71 Aligned_cols=281 Identities=15% Similarity=0.136 Sum_probs=203.4
Q ss_pred HHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHHHHHHHH
Q 011567 158 DCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSLRNTLE 233 (483)
Q Consensus 158 ~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~Le~~l~ 233 (483)
++++++++++|.++.+++++|++|+..+++++.++||.|+++.+.|.++...+ ...|.++..++..|++++++.++
T Consensus 2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~ 81 (331)
T 1pff_A 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK 81 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhc
Confidence 68999999999999999999999999999999999999999999998877665 34788999999888888887664
Q ss_pred HhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHH-cCcEEEEeCccccccccCCCCccccccCCCCCceeEEEc
Q 011567 234 RVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK-YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTA 312 (483)
Q Consensus 234 ~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k-~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~ 312 (483)
+ ++++|+++++++++|.+.|+++|.++|++ ||+++|+||+|+.|.+.. .. . .++|++++
T Consensus 82 ~----------~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~---~~--~-----~~~d~~~~ 141 (331)
T 1pff_A 82 P----------NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTN---PL--D-----LGVDIVVH 141 (331)
T ss_dssp T----------TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCC---GG--G-----GTCSEEEE
T ss_pred C----------CCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCC---hh--h-----cCCcEEEE
Confidence 2 36889999999999999999999999999 999999999998775431 11 1 23489999
Q ss_pred cccccccCC----CceeeccH-HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhcc-
Q 011567 313 AMGHALATE----GGFCTGSA-RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSD- 386 (483)
Q Consensus 313 s~~K~lg~~----GG~i~~~~-~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~- 386 (483)
|++|+++.. +|++++++ ++++.++....++ ++.+.++..+.++.++++.+. ...++..++.+.+.+.|++
T Consensus 142 s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~ 217 (331)
T 1pff_A 142 SATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDI-TGAIISPHDAWLITRGTLTLD---MRVKRAAENAQKVAEFLHEH 217 (331)
T ss_dssp ETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCC-CCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHC
T ss_pred ECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhh-cCCCCCHHHHHHHHcCcchHH---HHHHHHHHHHHHHHHHHHcC
Confidence 999999743 67999998 8888887654431 334567777777666776543 2334444444444444432
Q ss_pred -------------CCCceeec---CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeec---------ccc
Q 011567 387 -------------IHGLSIAS---NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSK---------RSM 441 (483)
Q Consensus 387 -------------~~~~~i~~---~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~---------~~~ 441 (483)
++++.+.. ...++++.+.+.+ ..++.. .+++.||++.... .+.
T Consensus 218 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~-~l~~~gI~~~~~s~g~~~sl~~~~~ 285 (331)
T 1pff_A 218 KAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG-----------LEKAKK-VLDNCHVVSLAVSLGGPESLIQHPA 285 (331)
T ss_dssp TTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS-----------HHHHHH-HHHTCSSSEECSSCCSSSCEEECHH
T ss_pred CCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC-----------HHHHHH-HHHhCCCceeccCCCCcceeeecch
Confidence 22333321 1257788888741 113343 5667799876441 111
Q ss_pred cc-----------c-CCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567 442 LD-----------K-CRLPVGIRLFVSAAHSEADLVKACESLKRI 474 (483)
Q Consensus 442 ~~-----------~-~~~~~~lRi~~~~~~t~edi~~~~~~l~~~ 474 (483)
.. . ...+..+|++++..+|+++++++.++|+++
T Consensus 286 ~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 286 SMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp HHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred hhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 00 0 011345999999999999999999998764
No 163
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.94 E-value=3.3e-24 Score=218.12 Aligned_cols=283 Identities=18% Similarity=0.191 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhH----hhhcCCeEEEecCCCHHHHH
Q 011567 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHNDMDSLR 229 (483)
Q Consensus 154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g----~~~s~~~v~~~~~~d~~~Le 229 (483)
+...++++++++++|.++++++++|++|+..+++++.++||.|++..+.|.++... +...|.+++.++.+ +++|+
T Consensus 56 ~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~l~ 134 (412)
T 2cb1_A 56 PTAKALEERLKALEGALEAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE-PEAVR 134 (412)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS-HHHHH
T ss_pred hHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-HHHHH
Confidence 67899999999999999899999999999999999999999999999999876665 34568888888764 77777
Q ss_pred HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567 230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI 309 (483)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di 309 (483)
+.+++ ++++|+++++++++|.+.|+++|+++|++||+++|+||+|+.+... ... .+ .++|+
T Consensus 135 ~~i~~----------~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~--~~~----~~---~~~di 195 (412)
T 2cb1_A 135 EALSA----------KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGAL--CRP----LA---WGAHV 195 (412)
T ss_dssp HHCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTS--CCG----GG---GTCSE
T ss_pred HHhcc----------CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccc--CCc----cc---cCCeE
Confidence 66632 3788999999999999999999999999999999999999865111 111 11 23499
Q ss_pred EEccccccccC----CCceeeccH---------------------------HHHHHHHhcCCceeecCCCcHHHHHHHHH
Q 011567 310 VTAAMGHALAT----EGGFCTGSA---------------------------RVVDHQRLSSSGYVFSASLPPYLASAAIT 358 (483)
Q Consensus 310 ~~~s~~K~lg~----~GG~i~~~~---------------------------~~~~~~~~~~~~~~fs~~~~p~~~aaa~~ 358 (483)
++.|++|+++. .||+++.++ ++.+.++.... ..++..++|..++.+..
T Consensus 196 ~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~-~~~g~~~~~~~a~~~~~ 274 (412)
T 2cb1_A 196 VVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGL-SLCGMALSPFNAYLLFQ 274 (412)
T ss_dssp EEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHT-TTTCCCCCHHHHHHHHH
T ss_pred EEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHH-HhcCCCCChHHhHHHHc
Confidence 99999999974 345555552 33444443210 11223567888877777
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee-cC----------------CCCCEEEEEecCCCCCchhhHHHHHH
Q 011567 359 AIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA-SN----------------PESPIVFLILEKSTGSMKNDLQLLED 421 (483)
Q Consensus 359 al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~-~~----------------~~~~i~~l~l~~~~~~~~~~~~~~~~ 421 (483)
.++.+. +..++..++.+++.+.|.+.+++... .+ ..++++.+.+ .. .+ +
T Consensus 275 ~l~~l~---~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~~-------~~---~ 340 (412)
T 2cb1_A 275 GLETVA---LRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-GD-------LE---R 340 (412)
T ss_dssp HGGGHH---HHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-SS-------HH---H
T ss_pred CCchHH---HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-CC-------HH---H
Confidence 666553 45667778999999999888787633 11 2466888888 31 11 2
Q ss_pred HHHHHHHhCCEEEEeec---------cccccc-CC-----------CCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567 422 IADWALKEDGVFVVTSK---------RSMLDK-CR-----------LPVGIRLFVSAAHSEADLVKACESLKR 473 (483)
Q Consensus 422 i~~~~l~~~Gv~v~~~~---------~~~~~~-~~-----------~~~~lRi~~~~~~t~edi~~~~~~l~~ 473 (483)
+ ...+++.||.+ ... .+.... .. .+..||++++..+|+++|+.+.++|++
T Consensus 341 ~-~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 341 A-SRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp H-HHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred H-HHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 2 33456678888 542 221100 00 134599999999999999999998864
No 164
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.94 E-value=2e-24 Score=218.29 Aligned_cols=286 Identities=15% Similarity=0.095 Sum_probs=209.5
Q ss_pred hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHHH
Q 011567 153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSL 228 (483)
Q Consensus 153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~L 228 (483)
.+...+++++|++++|.++++++++|++|+..+++++.++||.|++....|.++...+ ...|.++..++.+|+++|
T Consensus 65 ~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l 144 (392)
T 3qhx_A 65 NPTRTALEAALAAVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADLDAV 144 (392)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTTCHHHH
T ss_pred ChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCCCHHHH
Confidence 3567899999999999999999999999999999999999999999998888766555 567889999999999999
Q ss_pred HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCcee
Q 011567 229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKID 308 (483)
Q Consensus 229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~D 308 (483)
++.+++ ++++|+++++++++|.+.|+++|+++|++||+++|+||+|+.+.... ..+. .+|
T Consensus 145 ~~~i~~----------~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~~~-------~~~~---~~d 204 (392)
T 3qhx_A 145 RAAIRP----------TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQ-------PLSL---GAD 204 (392)
T ss_dssp HHHCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCC-------GGGG---TCS
T ss_pred HHhhCC----------CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccccCC-------hHHh---CCc
Confidence 887753 37899999999999999999999999999999999999998653321 1222 348
Q ss_pred EEEccccccccCC----Cceeecc-HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Q 011567 309 IVTAAMGHALATE----GGFCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG 383 (483)
Q Consensus 309 i~~~s~~K~lg~~----GG~i~~~-~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~ 383 (483)
+++.|++|.+|+. ||+++++ +++.+.++..... ++...+|+.++++...++.+. ...++..++.+.+.+.
T Consensus 205 i~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~--~g~~~~~~~~~~~~~~l~~l~---~~~~~~~~~~~~l~~~ 279 (392)
T 3qhx_A 205 VVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNG--AGAVPGPFDAYLTMRGLKTLV---LRMQRHSENAAAVAEF 279 (392)
T ss_dssp EEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHH
T ss_pred EEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHh--cCCCCCHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHH
Confidence 9999999999854 6888876 5777766543222 334567888887777766543 3567788888889888
Q ss_pred hccCCCceeec-----------------CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc----
Q 011567 384 LSDIHGLSIAS-----------------NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML---- 442 (483)
Q Consensus 384 L~~~~~~~i~~-----------------~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~---- 442 (483)
|++.+.+.... ...+.++.+.++.. ......+.+. ++..|+.+..+...++
T Consensus 280 L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~-------~~~~~~~~~~-l~~~~~~~s~G~~~sl~~~~ 351 (392)
T 3qhx_A 280 LAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAG-------RTAAEQLCAK-TNIFILAESLGSVESLIEHP 351 (392)
T ss_dssp HHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTC-------HHHHHHHHHH-CSSSEECSCCCCSSCEEECG
T ss_pred HhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCc-------HHHHHHHHHh-CCCceECCCCCCCCceeeCc
Confidence 88776543221 11266889988531 2234455553 4444555543332111
Q ss_pred ---cc--------CCCCCceEEEccCCCCHHHHHHHHHHH
Q 011567 443 ---DK--------CRLPVGIRLFVSAAHSEADLVKACESL 471 (483)
Q Consensus 443 ---~~--------~~~~~~lRi~~~~~~t~edi~~~~~~l 471 (483)
.+ ...++.||+++....++++++.+.++|
T Consensus 352 ~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 352 SAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp GGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred ccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 00 012345999999888888877776665
No 165
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.94 E-value=2.4e-24 Score=217.53 Aligned_cols=295 Identities=14% Similarity=0.130 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHhhhCCCC--EE-EecccHHHHHhhhhhhccCCcEEEEcCCchhHHH--hHhhhcCCeEEEecC-----C
Q 011567 154 DVHLDCEARIAKFLGTPD--SI-LYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQ--NGLYLSRSTVVYFKH-----N 223 (483)
Q Consensus 154 ~~~~~l~~~La~~~g~e~--~i-~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~--~g~~~s~~~v~~~~~-----~ 223 (483)
....++++.+++++|.+. .+ +.++|++++..+++++.++||.|++..+.|.++. ..+...|.+++.++. .
T Consensus 51 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~ 130 (396)
T 2ch1_A 51 RTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPF 130 (396)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCCCCCC
Confidence 457899999999999753 34 5577889999999999999999999888888764 466777888887773 4
Q ss_pred CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCC
Q 011567 224 DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVP 303 (483)
Q Consensus 224 d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~ 303 (483)
|+++|++.+++. ++++|+++++++++|.+.|+++|.++|++||+++|+||+|++|... .++.
T Consensus 131 d~~~l~~~l~~~---------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~---------~~~~ 192 (396)
T 2ch1_A 131 SLETLARAIELH---------QPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVP---------FYMD 192 (396)
T ss_dssp CHHHHHHHHHHH---------CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBC---------CCTT
T ss_pred CHHHHHHHHHhC---------CCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCc---------cchh
Confidence 788888887642 1567788888899999999999999999999999999999865321 1222
Q ss_pred CCceeEEEcccccccc-CCC-ceeeccHHHHHHHHhcC---Cc------------------eeecCCCcHHHHHHHHHHH
Q 011567 304 VDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRLSS---SG------------------YVFSASLPPYLASAAITAI 360 (483)
Q Consensus 304 ~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~~~~~~---~~------------------~~fs~~~~p~~~aaa~~al 360 (483)
..++|+++.|++|+++ +.| |+++.++++++.++... .+ .....+.+...++++.+++
T Consensus 193 ~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al 272 (396)
T 2ch1_A 193 KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREAL 272 (396)
T ss_dssp TTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHH
T ss_pred hcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHH
Confidence 2335899999999886 334 78888888887764321 00 0111234666667777788
Q ss_pred HHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecCCC----CCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEE
Q 011567 361 DVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNPE----SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV 434 (483)
Q Consensus 361 ~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~----~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v 434 (483)
+.+.+ .++.+++++++++++.+.|+++ |+++..+.. ..++.+.++... + ..++.+.++++.||.+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~L~~~~gi~v 343 (396)
T 2ch1_A 273 AQIAEEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIPKGV-----D---WWKVSQYAMNNFSLEV 343 (396)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECCTTC-----C---HHHHHHHHHHHHCBCC
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCeeccCCccccCCceEEEEcCCCC-----C---HHHHHHHHHHhCCEEE
Confidence 77632 2467888999999999999887 877764322 237777764211 1 2356776665559998
Q ss_pred EeecccccccCCCCCceEEEc-cCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567 435 VTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 435 ~~~~~~~~~~~~~~~~lRi~~-~~~~t~edi~~~~~~l~~~~~~~~~ 480 (483)
.+...+. .+..+|+++ ...+|++|+++++++|+++++++..
T Consensus 344 ~~g~~~~-----~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~~ 385 (396)
T 2ch1_A 344 QGGLGPT-----FGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHP 385 (396)
T ss_dssp BCCCGGG-----TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCT
T ss_pred ecCcccc-----CCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhCc
Confidence 7653221 134599999 5677999999999999999987643
No 166
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.93 E-value=4.1e-24 Score=212.72 Aligned_cols=310 Identities=14% Similarity=0.060 Sum_probs=220.2
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC---CEEEecccHHHHHhhhhhhccCCcEEEEcC
Q 011567 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP---DSILYSYGLSTMFSAIPCFCKKGDLIVADE 200 (483)
Q Consensus 124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e---~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~ 200 (483)
.+|++.+++.+.+.+...+.+ .+ .....+...++++++++++|.+ +.+++++|++|+..++.++.++ ++++...
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~ 91 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVIS-HR-SKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVEK-KSFHCVN 91 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSC-TT-SHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCSS-EEEEEEC
T ss_pred CCHHHHHHHHHHhcCCccCcC-CC-CHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccCC-cEEEEcC
Confidence 468899999888876221111 11 1122356789999999999863 3556688899999999999988 7777776
Q ss_pred CchhH-HHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHc
Q 011567 201 GVHWG-IQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKY 274 (483)
Q Consensus 201 ~~h~s-~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~ 274 (483)
++|.. ....+...|.+++.++.+ |+++|+ ..+ ++++|+++++++++|.+.|+++|.++|++|
T Consensus 92 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~-----~~~-------~~~~v~~~~~~nptG~~~~l~~i~~la~~~ 159 (362)
T 3ffr_A 92 GSFSKRFYEFAGELGREAYKEEAAFGKGFYPADIT-----VPA-------DAEIICLTHNETSSGVSMPVEDINTFRDKN 159 (362)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCTTCCCCGGGCC-----CCT-------TCCEEEEESEETTTTEECCHHHHTTSGGGS
T ss_pred cHHHHHHHHHHHHhCCCeEEEecCCCCCCCHHHHh-----ccC-------CccEEEEEcCCCCcceeCCHHHHHHHHHhC
Confidence 66652 334556668888777643 667776 222 367888888899999999999999999999
Q ss_pred -CcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCC-ceeeccHHHHHHHHhcCC-----ce----
Q 011567 275 -RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVDHQRLSSS-----GY---- 342 (483)
Q Consensus 275 -~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~~~~~~~~-----~~---- 342 (483)
|+++|+|++|++|... .++ .++|++++|++|+++ +.| |+++.++++++.++.... ++
T Consensus 160 p~~~li~D~a~~~~~~~---------~~~--~~~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 228 (362)
T 3ffr_A 160 KDALIFVDAVSSLPYPK---------FDW--TKIDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTI 228 (362)
T ss_dssp TTSEEEEECTTTTTSSC---------CCT--TSCSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSH
T ss_pred CCCEEEEecccccCCcc---------cCh--hHCcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCcccccH
Confidence 9999999999865322 122 226899999999998 555 788888888776543211 11
Q ss_pred ----------eecCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecC----CCCCEEEEEec
Q 011567 343 ----------VFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASN----PESPIVFLILE 406 (483)
Q Consensus 343 ----------~fs~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~----~~~~i~~l~l~ 406 (483)
....+.+.....++.++++.+.+ .++..++.+++.+++.+.|++++|+.+... ....++++.++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~ 308 (362)
T 3ffr_A 229 PSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTT 308 (362)
T ss_dssp HHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEES
T ss_pred HHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecC
Confidence 11234566666666677776543 256888899999999999999888887641 23567777774
Q ss_pred CCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567 407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS 475 (483)
Q Consensus 407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~ 475 (483)
. ...++.+.+.+ +||.+.++..+. .+..||++++..+|++|+++++++|++++
T Consensus 309 ~----------~~~~~~~~l~~-~gi~~~~g~~~~-----~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 309 M----------LPGEINKILEP-FDMAVGAGYGSK-----KETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp S----------CHHHHHHHHGG-GTEEEEECSGGG-----TTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred C----------CHHHHHHHHHH-CCeEEecCcccc-----CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3 13356776555 499998753321 12459999999999999999999998764
No 167
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.93 E-value=1.3e-24 Score=226.52 Aligned_cols=346 Identities=14% Similarity=0.102 Sum_probs=235.3
Q ss_pred ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-------CEEEeccc
Q 011567 106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-------DSILYSYG 178 (483)
Q Consensus 106 ~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-------~~i~~~sG 178 (483)
.+|+..+|+++ +.....+|.+.+++.+.+.+...+.. ...+...+..++.+.+++++|.+ ..+++++|
T Consensus 52 l~gnp~~~l~s--~~t~~~~~~v~~~l~~~~~~~~~~~~---~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~gg 126 (502)
T 3hbx_A 52 LDGNPRLNLAS--FVTTWMEPECDKLIMSSINKNYVDMD---EYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGS 126 (502)
T ss_dssp GSCCGGGBTTC--CSCCCCCHHHHHHHHHTTTCBTTCTT---TCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSH
T ss_pred cCCCCCceecc--ccCCCCCHHHHHHHHHHhccCCCChh---cChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcH
Confidence 35555555554 23333678899988888766433221 11223456678888899999977 34467999
Q ss_pred HHHHHhhhhhhccC--------Cc-----EEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhh
Q 011567 179 LSTMFSAIPCFCKK--------GD-----LIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADN 239 (483)
Q Consensus 179 ~~a~~~ai~~~~~~--------gd-----iI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~ 239 (483)
++|+..++.++..+ |+ .|+++...|.++.++++..|.+++.++.+ |+++|++.+.+
T Consensus 127 tea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~----- 201 (502)
T 3hbx_A 127 SEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDE----- 201 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCT-----
T ss_pred HHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCCCcCcCCHHHHHHHHhh-----
Confidence 99999888776544 65 89999999999999999999998888743 56666665533
Q ss_pred hhccCccEEEEEecccCCCCCccChHHHHHHHHHc------CcEEEEeCccccccc---cCCCCccccccCCCCCceeEE
Q 011567 240 KRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKY------RFRVFLDESNSFGVL---GRSGRGLTEHCGVPVDKIDIV 310 (483)
Q Consensus 240 ~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~------~~~li~DEa~s~g~l---g~~G~g~~~~~~v~~~~~Di~ 310 (483)
.+++|++....+++|.+.|+++|.++|++| |+++++|++|++++. ....+. .+....+|++
T Consensus 202 -----~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~-----~~~~~~~D~v 271 (502)
T 3hbx_A 202 -----NTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEW-----DFRLPLVKSI 271 (502)
T ss_dssp -----TEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCC-----STTSTTEEEE
T ss_pred -----CCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccccc-----ccCCCCceEE
Confidence 257787777888889999999999999999 999999999987653 221111 1222567999
Q ss_pred Ecccccccc-CCC-ce-eeccHHHH-HHHHhc-------CCceeecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHH
Q 011567 311 TAAMGHALA-TEG-GF-CTGSARVV-DHQRLS-------SSGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNT 377 (483)
Q Consensus 311 ~~s~~K~lg-~~G-G~-i~~~~~~~-~~~~~~-------~~~~~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~ 377 (483)
+.|.+|.++ +.| |+ ++.+++.. +.+... ...+.+..+.+...+.+..++++.+. ...+..++..+++
T Consensus 272 ~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a 351 (502)
T 3hbx_A 272 NVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENM 351 (502)
T ss_dssp EEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999994 333 44 45555543 222110 00111223333333444445555443 2246788889999
Q ss_pred HHHHHhhccCCCceeecC-CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc
Q 011567 378 AILRTGLSDIHGLSIASN-PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS 456 (483)
Q Consensus 378 ~~l~~~L~~~~~~~i~~~-~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~ 456 (483)
++|.+.|.+++++++..+ +..+++.+++++.... + ..++.+. |.++|+++.....+..... ...+||++.
T Consensus 352 ~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~---~---~~~l~~~-L~~~Gi~v~~~~~p~~~~~--~~~lRisv~ 422 (502)
T 3hbx_A 352 IVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCH---T---EFEISDM-LRRYGWIVPAYTMPPNAQH--ITVLRVVIR 422 (502)
T ss_dssp HHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSC---C---HHHHHHH-HHTTTCBCCEEECCTTCTT--CEEEEEECC
T ss_pred HHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcC---C---HHHHHHH-HHhCCcEEeeccCCcccCC--ceEEEEEeC
Confidence 999999999877988765 6789999998643210 1 2256665 5556998765443321100 134999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Q 011567 457 AAHSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 457 ~~~t~edi~~~~~~l~~~~~~~~~ 480 (483)
..+|++|++++++.|+++++++..
T Consensus 423 ~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 423 EDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987644
No 168
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.93 E-value=2.4e-24 Score=224.32 Aligned_cols=346 Identities=11% Similarity=0.064 Sum_probs=229.0
Q ss_pred ChHHHHHHHHHHHhcCC-CCCCCCCcccChHHHHHHHHHHHhhhC-C----CCEEEecccHHHHHhhhhhhccCCc----
Q 011567 125 HEKLLESCTSALEKYGV-GSCGPRGFYGTIDVHLDCEARIAKFLG-T----PDSILYSYGLSTMFSAIPCFCKKGD---- 194 (483)
Q Consensus 125 ~p~i~~a~~~~l~~~g~-g~~~~~~~~g~~~~~~~l~~~La~~~g-~----e~~i~~~sG~~a~~~ai~~~~~~gd---- 194 (483)
+..+.+++.+.+++++. +..+.....|..++...+++.+.++.| . ++.++++++++++..+++++.++||
T Consensus 103 P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d 182 (498)
T 3ihj_A 103 PEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRT 182 (498)
T ss_dssp CHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSE
T ss_pred CHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCC
Confidence 35566777888887542 222233344555666666666666654 2 4566678888999999999998875
Q ss_pred EEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---h
Q 011567 195 LIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---L 264 (483)
Q Consensus 195 iI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L 264 (483)
.|+++.+.|..+...++..|.+++.++++ |+++|++.+++.... .++++|++..++|++|.+.+ +
T Consensus 183 ~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~-----~~~k~i~l~np~NPTG~v~s~~~l 257 (498)
T 3ihj_A 183 GVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDH-----CDPKVLCIINPGNPTGQVQSRKCI 257 (498)
T ss_dssp EEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTT-----SEEEEEEEESSCTTTCCCCCHHHH
T ss_pred EEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhcc-----CCCeEEEEECCCCCCCCcCCHHHH
Confidence 99999999999999999999999888765 789999988764211 12566666688899999987 7
Q ss_pred HHHHHHHHHcCcEEEEeCccccccccCCCCc--ccccc-CCCC---Cce-eEEEccccccc-c---CCCceee---ccHH
Q 011567 265 DELIRLKEKYRFRVFLDESNSFGVLGRSGRG--LTEHC-GVPV---DKI-DIVTAAMGHAL-A---TEGGFCT---GSAR 330 (483)
Q Consensus 265 ~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g--~~~~~-~v~~---~~~-Di~~~s~~K~l-g---~~GG~i~---~~~~ 330 (483)
++|+++|++||+++|+||+|+.++++..... +.... ++.+ +++ .++++|+||++ | ..+||++ ++++
T Consensus 258 ~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~ 337 (498)
T 3ihj_A 258 EDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPE 337 (498)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHH
T ss_pred HHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHH
Confidence 8899999999999999999998877532111 11110 0000 111 47789999999 4 3459987 6888
Q ss_pred HHHHHHhcCCceeecCCCcHHHHHHHHHHHH-----------HHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCC
Q 011567 331 VVDHQRLSSSGYVFSASLPPYLASAAITAID-----------VLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP 399 (483)
Q Consensus 331 ~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~-----------~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~ 399 (483)
+++.+...... +. ..++....++.++++ ++++..+++++++++++++.+.|++++|+.+..+..+.
T Consensus 338 l~~~l~~~~~~--~~-~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~ 414 (498)
T 3ihj_A 338 IKGQLVKLLSV--RL-CPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAM 414 (498)
T ss_dssp HHHHHHHHHHH--SC-CCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSS
T ss_pred HHHHHHHHHhc--cC-CCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEE
Confidence 88877654222 12 223444444433332 23333457788999999999999988898887654555
Q ss_pred EEEEEecCCCCCchh---hHHHHHH-HHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567 400 IVFLILEKSTGSMKN---DLQLLED-IADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRIS 475 (483)
Q Consensus 400 i~~l~l~~~~~~~~~---~~~~~~~-i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~ 475 (483)
+.++.+..+...... ......+ ++.++|++.||.+.++..+.... .+..+|+++. ++++++++++++|++++
T Consensus 415 ~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~--~~~~~Ris~~--~~~e~l~~~i~~L~~~~ 490 (498)
T 3ihj_A 415 YAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQRE--GTYHFRMTIL--PPVEKLKTVLQKVKDFH 490 (498)
T ss_dssp EECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCT--TCCBEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred EEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCC--CCCEEEEEeC--CCHHHHHHHHHHHHHHH
Confidence 666566322100000 0000112 24556766799999876544211 1235999984 89999999999999999
Q ss_pred HHHHhcC
Q 011567 476 AVVLRDR 482 (483)
Q Consensus 476 ~~~~~~~ 482 (483)
++..++.
T Consensus 491 ~~~~~~~ 497 (498)
T 3ihj_A 491 INFLEKY 497 (498)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9887653
No 169
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.93 E-value=1e-23 Score=218.69 Aligned_cols=305 Identities=13% Similarity=0.154 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHhhhCCC------------CEEEecccHHHHHhhhhhhcc-------------------CCcEEEEcCCc
Q 011567 154 DVHLDCEARIAKFLGTP------------DSILYSYGLSTMFSAIPCFCK-------------------KGDLIVADEGV 202 (483)
Q Consensus 154 ~~~~~l~~~La~~~g~e------------~~i~~~sG~~a~~~ai~~~~~-------------------~gdiI~~~~~~ 202 (483)
.+..++.+++++++|.+ ..+++++|++||..++.+... ++++|+++...
T Consensus 118 ~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~ 197 (481)
T 4e1o_A 118 ELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQA 197 (481)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTS
T ss_pred HHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcc
Confidence 45555556667778865 347779999999888765432 56799999999
Q ss_pred hhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcE
Q 011567 203 HWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFR 277 (483)
Q Consensus 203 h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~ 277 (483)
|.++.+++.+.|.+++.++.+ |+++|++.+++.... ...+.+|++....+++|.+.||++|.++|++||++
T Consensus 198 H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~----g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~ 273 (481)
T 4e1o_A 198 HSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQR----GLVPVFVCATLGTTGVCAFDCLSELGPICAREGLW 273 (481)
T ss_dssp CHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHT----TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCE
T ss_pred hHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhC----CCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCe
Confidence 999999999999999998865 899999999764321 11245677777778889999999999999999999
Q ss_pred EEEeCccccccc-cCCCCccccccCCCCCceeEEEccccccccCC---CceeeccHHHHHHHHhcCCceeec--------
Q 011567 278 VFLDESNSFGVL-GRSGRGLTEHCGVPVDKIDIVTAAMGHALATE---GGFCTGSARVVDHQRLSSSGYVFS-------- 345 (483)
Q Consensus 278 li~DEa~s~g~l-g~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~---GG~i~~~~~~~~~~~~~~~~~~fs-------- 345 (483)
+++|++|+++.+ +...++.. .|+ ..+|.++.+.+|+++.+ |++++.++............|.+.
T Consensus 274 lhvDaA~g~~~~~~~~~~~~~--~gi--~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~ 349 (481)
T 4e1o_A 274 LHIDAAYAGTAFLCPEFRGFL--KGI--EYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATD 349 (481)
T ss_dssp EEEECTTGGGGGGSGGGGGGG--TTG--GGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCC
T ss_pred EEeehhhHHHHHhChhhHHHh--cCc--ccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCcccCCCCC
Confidence 999999987753 32222221 233 34589999999999733 345566665543221112222211
Q ss_pred -------CCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhH
Q 011567 346 -------ASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDL 416 (483)
Q Consensus 346 -------~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~ 416 (483)
.+.+ ..+....++++.+. ...+++++..++++++.+.|++++++++..++..+++++++... .
T Consensus 350 ~~~~~~~~~r~-~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~-------~ 421 (481)
T 4e1o_A 350 FMHWQIPLSRR-FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGP-------N 421 (481)
T ss_dssp GGGGSSSSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSC-------H
T ss_pred cccccccCCCC-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCc-------h
Confidence 1111 11222233333332 22467889999999999999998899988777889999988531 2
Q ss_pred HHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCC-CCHHHHHHHHHHHHHHHHHHHh
Q 011567 417 QLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAA-HSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 417 ~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~-~t~edi~~~~~~l~~~~~~~~~ 480 (483)
....++.+++.+++.+++.+..... ...+|+++... .|++||++++++|+++++++++
T Consensus 422 ~~~~~l~~~L~~~g~~~~~~~~~~g------~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~~ 480 (481)
T 4e1o_A 422 SLTENVLKEIAKAGRLFLIPATIQD------KLIIRFTVTSQFTTRDDILRDWNLIRDAATLILS 480 (481)
T ss_dssp HHHHHHHHHHHHHCSSBCEEEEETT------EEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCeEEEEeeEECC------EEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 2345777777766445555432211 12399997654 5899999999999999988764
No 170
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.93 E-value=4.3e-24 Score=218.97 Aligned_cols=326 Identities=17% Similarity=0.175 Sum_probs=225.1
Q ss_pred ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhh
Q 011567 106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSA 185 (483)
Q Consensus 106 ~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~a 185 (483)
++|+++|+|...++ ++++.+++.+++... .++..+...++++.+++++|.++++++++|++|+..+
T Consensus 28 ~~~~~~i~~~~~~~-----~~~~~~a~~~~~~~~---------~~~~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~a 93 (437)
T 3bb8_A 28 EAGKSVVPPSGKVI-----GTKELQLMVEASLDG---------WLTTGRFNDAFEKKLGEYLGVPYVLTTTSGSSANLLA 93 (437)
T ss_dssp CTTTSCBCSCCCCC-----CHHHHHHHHHHHHHC---------CCBSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHH
T ss_pred cCCCccccCCCCCC-----CHHHHHHHHHHHHcC---------CcCCChHHHHHHHHHHHHHCCCcEEEeCCHHHHHHHH
Confidence 45777888865433 478999999998763 1233467899999999999999999999999999999
Q ss_pred hhhh---------ccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567 186 IPCF---------CKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIV 250 (483)
Q Consensus 186 i~~~---------~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv 250 (483)
++++ .++||.|+++...|.++...+...|.+++.++.+ |+++|++.+.. ++++|+
T Consensus 94 l~~l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~----------~~~~v~ 163 (437)
T 3bb8_A 94 LTALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDIPTYNVNASLIEAAVSD----------KTKAIM 163 (437)
T ss_dssp HHHTTCGGGGGGSCCTTCEEEECSSSCHHHHHHHHHTTCEEEECCEETTTTEECGGGHHHHCCT----------TEEEEE
T ss_pred HHHhhhcccccccCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccCccCCcCHHHHHHhcCC----------CCeEEE
Confidence 9988 7889999999999999999999999998888754 67788776632 255665
Q ss_pred EecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccc--cccc-CCCceeec
Q 011567 251 VEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMG--HALA-TEGGFCTG 327 (483)
Q Consensus 251 ~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~--K~lg-~~GG~i~~ 327 (483)
+.+ +.|...|+++|.++|++||+++|+||+|+.|... .++ ..+.. .|+++.|++ |.++ +.||++++
T Consensus 164 ~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~~----~~~~~---~d~~~~s~~~~k~l~~g~gg~~~~ 232 (437)
T 3bb8_A 164 IAH---TLGNLFDLAEVRRVADKYNLWLIEDCCDALGSTY-DGK----MAGTF---GDIGTVSFYPAKHITMGEGGAVFT 232 (437)
T ss_dssp EEC---GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEE-TTE----ETTSS---SSEEEEECSTTSSSCCSSCEEEEE
T ss_pred EeC---CCCChhcHHHHHHHHHHcCCEEEEECccccCceE-CCe----ecccc---cCEEEEECcCCcCCCCCCeEEEEe
Confidence 543 2477789999999999999999999999977543 222 22322 277777775 4443 45688888
Q ss_pred cHHHHH-H---HHhcCCc----------------------------------eeecCCCcHHHHHHHHHHHHHHhcCcHH
Q 011567 328 SARVVD-H---QRLSSSG----------------------------------YVFSASLPPYLASAAITAIDVLEENPDL 369 (483)
Q Consensus 328 ~~~~~~-~---~~~~~~~----------------------------------~~fs~~~~p~~~aaa~~al~~l~~~~~~ 369 (483)
+++.+. . ++..+.+ ..|+..++++.+++++++++.+. +.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~~~---~~ 309 (437)
T 3bb8_A 233 QSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLERIE---EF 309 (437)
T ss_dssp SCHHHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHHHHHH---HH
T ss_pred CCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHHHHHHHHH---HH
Confidence 755433 2 2211111 01222357888888888887663 35
Q ss_pred HHHHHHHHHHHHHhhccCCCceeecCCC-----C-CEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc
Q 011567 370 ITKLKKNTAILRTGLSDIHGLSIASNPE-----S-PIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD 443 (483)
Q Consensus 370 ~~~l~~~~~~l~~~L~~~~~~~i~~~~~-----~-~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~ 443 (483)
.++.+++.+++++.|++++++.+.+... + ..+.+.+..+.+ ....++.+. |.++||.++....+.+.
T Consensus 310 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~-L~~~GI~v~~~~~~~~~ 382 (437)
T 3bb8_A 310 VEKRKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKEDSG------VSRIDLVKF-LDEAKVGTRLLFAGNLT 382 (437)
T ss_dssp HHHHHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSEEEEECGGGS------SCHHHHHHH-HHHTTBCCBCCTTSSGG
T ss_pred HHHHHHHHHHHHHHhhccCCccccCCCCCCCceeeEEEEEEECCcCc------CcHHHHHHH-HHHCCCceeccCCcccc
Confidence 6667888999999999887765543211 1 123343432100 012356665 44569999866442210
Q ss_pred ---cC---------CCC-------CceEEEccCCCCHHHHHHHHHHHHHHHH
Q 011567 444 ---KC---------RLP-------VGIRLFVSAAHSEADLVKACESLKRISA 476 (483)
Q Consensus 444 ---~~---------~~~-------~~lRi~~~~~~t~edi~~~~~~l~~~~~ 476 (483)
.. ..| ..||++++..+|++||++++++|+++++
T Consensus 383 ~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 383 RQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp GSGGGSSCCCEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred cCchhhccCccccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHHHHc
Confidence 00 001 1399999999999999999999988754
No 171
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.93 E-value=5e-25 Score=227.76 Aligned_cols=346 Identities=17% Similarity=0.173 Sum_probs=218.9
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhh
Q 011567 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAI 186 (483)
Q Consensus 107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai 186 (483)
.|+.||||.+.... |.+.+++.+++.. +. ..|+..+...+|++++++++|.++++++++|++|+..++
T Consensus 39 ~~~~ylD~~~~~~~-----~~v~~a~~~~l~~-~~------~~y~~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al 106 (467)
T 2oqx_A 39 SEDVFIDLLTDSGT-----GAVTQSMQAAMMR-GD------EAYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYI 106 (467)
T ss_dssp GGGCSEECSCCSSC-----SCCCHHHHHHTTS-CC------CCSSSCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHH
T ss_pred CCCeeEecccCCCc-----HHHHHHHHHHhcc-Cc------ceeccCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHH
Confidence 46789999775332 8888888888753 21 145556677899999999999998999999999999999
Q ss_pred hhhccC-----C----cEEEEcCCchhHHHhH-hhhcCCeEEEe--------------cC-CCHHHHHHHHHHhhhhhhh
Q 011567 187 PCFCKK-----G----DLIVADEGVHWGIQNG-LYLSRSTVVYF--------------KH-NDMDSLRNTLERVTADNKR 241 (483)
Q Consensus 187 ~~~~~~-----g----diI~~~~~~h~s~~~g-~~~s~~~v~~~--------------~~-~d~~~Le~~l~~~~~~~~~ 241 (483)
+++.++ | |.|+++ .+|+....+ ....+..+... .. .|+++||+.+++....
T Consensus 107 ~~~~~~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~--- 182 (467)
T 2oqx_A 107 PVLIKKREQEKGLDRSKMVAFS-NYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN--- 182 (467)
T ss_dssp HHHHHHHHHHHCCCTTTCEEEE-SSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGG---
T ss_pred HHHhccccccCCCCccceEEec-ccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCC---
Confidence 988776 7 877766 577543322 22333333221 11 2789999988753211
Q ss_pred ccCccEEEEEecccCCC-CCccC---hHHHHHHHHHcCcEEEEeCcccc-ccc-------cCCCCccccccCCC-CCcee
Q 011567 242 AKKLRRYIVVEAVYQNS-GQIAP---LDELIRLKEKYRFRVFLDESNSF-GVL-------GRSGRGLTEHCGVP-VDKID 308 (483)
Q Consensus 242 ~~~~~~~iv~e~v~~~~-G~i~~---L~~l~~l~~k~~~~li~DEa~s~-g~l-------g~~G~g~~~~~~v~-~~~~D 308 (483)
++++|+++++++++ |.+.+ |++|+++|++||++||+|+++++ +.+ +..|..... ++.. ...+|
T Consensus 183 ---~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~-~~~~~~~~~d 258 (467)
T 2oqx_A 183 ---NVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQ-ITRETYKYAD 258 (467)
T ss_dssp ---GCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHH-HHHHHGGGCS
T ss_pred ---ceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHH-HhhhhhccCC
Confidence 37889999988885 77765 78999999999999999998876 433 333332211 1100 01236
Q ss_pred EEEccccccccCC-CceeeccHH-HHHH---HHhc---CCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011567 309 IVTAAMGHALATE-GGFCTGSAR-VVDH---QRLS---SSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAIL 380 (483)
Q Consensus 309 i~~~s~~K~lg~~-GG~i~~~~~-~~~~---~~~~---~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l 380 (483)
+++.|++|++|.. ||+++++++ +++. ++.. ..+....+..+...+++....++... .++.+++..++.+++
T Consensus 259 ~~~~s~sK~~g~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~-~~~~~~~~~~~~~~l 337 (467)
T 2oqx_A 259 MLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGM-NLDWLAYRIAQVQYL 337 (467)
T ss_dssp EEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred eEEEecccccCCCCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhh-hHHHHHHHHHHHHHH
Confidence 7788999999855 888888766 4433 2221 11111111222222222212222211 123566678889999
Q ss_pred HHhhccCCCceeecCCCCCEEEEEecC--CCCCchhhHHH-HHHHHHHHHHhCCEEEEeeccccccc--------CCCCC
Q 011567 381 RTGLSDIHGLSIASNPESPIVFLILEK--STGSMKNDLQL-LEDIADWALKEDGVFVVTSKRSMLDK--------CRLPV 449 (483)
Q Consensus 381 ~~~L~~~~~~~i~~~~~~~i~~l~l~~--~~~~~~~~~~~-~~~i~~~~l~~~Gv~v~~~~~~~~~~--------~~~~~ 449 (483)
.+.|.++ ++++. +..+.++++.+.. +... .... ..+++..++.++||.+.+........ .....
T Consensus 338 ~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~ 412 (467)
T 2oqx_A 338 VDGLEEI-GVVCQ-QAGGHAAFVDAGKLLPHIP---ADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAE 412 (467)
T ss_dssp HHHHHHT-TCCEE-EECSSCEEEEHHHHSTTSC---GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCC
T ss_pred HHHHHHC-CCeee-cCCceEEEEechhhcccCC---cccccHHHHHHHHHHhcCceecccccccccccccccccccCccC
Confidence 9999887 77776 5567788887742 1100 0111 34567766356699998743200000 00014
Q ss_pred ceEEEccCC-CCHHHHHHHHHHHHHHHHHH
Q 011567 450 GIRLFVSAA-HSEADLVKACESLKRISAVV 478 (483)
Q Consensus 450 ~lRi~~~~~-~t~edi~~~~~~l~~~~~~~ 478 (483)
.||++++.. +|++||++++++|+++++++
T Consensus 413 ~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~ 442 (467)
T 2oqx_A 413 LLRLTIPRATYTQTHMDFIIEAFKHVKENA 442 (467)
T ss_dssp EEEECCCTTTSCHHHHHHHHHHHHHHHHSG
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Confidence 599999998 99999999999999998754
No 172
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.93 E-value=3e-24 Score=216.66 Aligned_cols=323 Identities=16% Similarity=0.170 Sum_probs=228.8
Q ss_pred eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh
Q 011567 110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF 189 (483)
Q Consensus 110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~ 189 (483)
++|+|+... -++++.+++.+++++.. ++..+...++++.+++++|.++++++++|++|+..+++++
T Consensus 9 ~~i~~~~p~-----~~~~~~~a~~~~~~~~~---------~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~ 74 (393)
T 1mdo_A 9 DFLPFSRPA-----MGAEELAAVKTVLDSGW---------ITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMAL 74 (393)
T ss_dssp CCBCSCCCC-----CCHHHHHHHHHHHHHTC---------CSSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHT
T ss_pred cccccCCCC-----CCHHHHHHHHHHHhcCC---------cCCChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHc
Confidence 356666521 23788899999988731 1234678899999999999998899999999999999999
Q ss_pred -ccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCcc
Q 011567 190 -CKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIA 262 (483)
Q Consensus 190 -~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~ 262 (483)
.++||.|+++.+.|.++...++..|.+++.++. .|+++|++.+++ ++++|++.+ ++|.+.
T Consensus 75 ~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~----------~~~~v~~~~---~~G~~~ 141 (393)
T 1mdo_A 75 GIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP----------QTKAIIPVH---YAGAPA 141 (393)
T ss_dssp TCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT----------TEEEECCBC---GGGCCC
T ss_pred CCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC----------CceEEEEeC---CCCCcC
Confidence 899999999999999999999999999888764 267777766642 256776654 468889
Q ss_pred ChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccc--cccc-CCCceeecc-HHHHHHHHhc
Q 011567 263 PLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMG--HALA-TEGGFCTGS-ARVVDHQRLS 338 (483)
Q Consensus 263 ~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~--K~lg-~~GG~i~~~-~~~~~~~~~~ 338 (483)
|+++|.++|++||+++|+||+|+.|... .++. ++. .|+++.|++ |+++ +.||+++++ +++++.++..
T Consensus 142 ~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~~~----~~~----~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~ 212 (393)
T 1mdo_A 142 DLDAIYALGERYGIPVIEDAAHATGTSY-KGRH----IGA----RGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSL 212 (393)
T ss_dssp CHHHHHHHHHHHTCCBCEECTTCTTCEE-TTEE----TTS----SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEEECccccCCeE-CCee----cCC----CCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHH
Confidence 9999999999999999999999976432 2221 222 489999998 9996 557888886 7787766432
Q ss_pred C-Cc--------------eeec-------CCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecC-
Q 011567 339 S-SG--------------YVFS-------ASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASN- 395 (483)
Q Consensus 339 ~-~~--------------~~fs-------~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~- 395 (483)
. .+ +.|. ..++++.++++...++.++ +..++.+++.+++++.|.+++ +.+...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~---~~~~~~~~~~~~l~~~L~~~~-~~~~~~~ 288 (393)
T 1mdo_A 213 KFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLD---ALNARRAAIAAQYHQAMADLP-FQPLSLP 288 (393)
T ss_dssp TBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHH---HHHHHHHHHHHHHHHHHHTSS-CEECCCC
T ss_pred HhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCC-cccccCC
Confidence 1 11 2221 2357887777776666543 467777889999999998873 665421
Q ss_pred -----CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc---------cCCCC-------CceEEE
Q 011567 396 -----PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD---------KCRLP-------VGIRLF 454 (483)
Q Consensus 396 -----~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~---------~~~~~-------~~lRi~ 454 (483)
..+.++++.++... ......++.+.+. ++||.+.+...+... ....+ ..||++
T Consensus 289 ~~~~~~~~~~~~v~~~~~~-----~~~~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~ 362 (393)
T 1mdo_A 289 SWEHIHAWHLFIIRVDEAR-----CGITRDALMASLK-TKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLP 362 (393)
T ss_dssp SSCEECCCSCEEEECCHHH-----HSSCHHHHHHHHH-HTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEEC
T ss_pred CCCCCceeEEEEEEecccc-----cccCHHHHHHHHH-hCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEec
Confidence 23457788774200 0001335666544 469998875433100 00111 249999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 455 VSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 455 ~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
++..+|++|+++++++|+++++..
T Consensus 363 ~~~~~t~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 363 LFPDMTESDFDRVITALHQIAGQG 386 (393)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999887653
No 173
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.93 E-value=2.3e-25 Score=226.54 Aligned_cols=327 Identities=10% Similarity=0.045 Sum_probs=220.3
Q ss_pred CeeEEEeecCCCCCCC----CChHHHHHHHH-HHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh-C-------CCCEEE
Q 011567 108 GKEVVNFASANYLGLI----GHEKLLESCTS-ALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-G-------TPDSIL 174 (483)
Q Consensus 108 G~~~id~~s~~~lG~~----~~p~i~~a~~~-~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~-g-------~e~~i~ 174 (483)
|++++||+++.|+++. ..|.+.+++.+ .++..... .|+......++++.+++++ + .++.++
T Consensus 28 ~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~------~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~ 101 (412)
T 1yaa_A 28 RATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNH------EYLGITGLPSLTSNAAKIIFGTQSDALQEDRVIS 101 (412)
T ss_dssp CSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCC------CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred CCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCccccc------CCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEE
Confidence 5678999999875552 45778888887 76521111 1222223467777777776 3 346667
Q ss_pred --ecccHHHHHhhh--hhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC-------CCHHHHHHHHHHhhhhhhhcc
Q 011567 175 --YSYGLSTMFSAI--PCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH-------NDMDSLRNTLERVTADNKRAK 243 (483)
Q Consensus 175 --~~sG~~a~~~ai--~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~-------~d~~~Le~~l~~~~~~~~~~~ 243 (483)
+++|++|+..++ .....+||.|+++.+.|..+...++..|.+++.++. .|+++|++.+++...
T Consensus 102 ~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~------ 175 (412)
T 1yaa_A 102 VQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPE------ 175 (412)
T ss_dssp EEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCT------
T ss_pred EeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCCC------
Confidence 778889988774 333458998888888888888888888998888776 268888888765311
Q ss_pred CccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccC---CCCccccccCCCCCc--eeEEEcccc
Q 011567 244 KLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGR---SGRGLTEHCGVPVDK--IDIVTAAMG 315 (483)
Q Consensus 244 ~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~---~G~g~~~~~~v~~~~--~Di~~~s~~ 315 (483)
.++++++..+++++|.+.+ +++|+++|++||+++|+||+|+.+.++. .+..+....+.. ++ .+++++|+|
T Consensus 176 -~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~s 253 (412)
T 1yaa_A 176 -GSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKL-STVSPVFVCQSFA 253 (412)
T ss_dssp -TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHT-TTTCCEEEEEECT
T ss_pred -CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcC-CCCcceEEEeccC
Confidence 2466666888899999987 6789999999999999999997654431 111221211111 11 378899999
Q ss_pred ccccCCC---ceee--c-----cHH----HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-------cCcHHHHHHH
Q 011567 316 HALATEG---GFCT--G-----SAR----VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-------ENPDLITKLK 374 (483)
Q Consensus 316 K~lg~~G---G~i~--~-----~~~----~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-------~~~~~~~~l~ 374 (483)
|++|+.| ||++ + +++ +++.++..... .++ +.+++..+++.++++... ..++.+++++
T Consensus 254 K~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 331 (412)
T 1yaa_A 254 KNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRS-EVS-NPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRIT 331 (412)
T ss_dssp TTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHT-TTS-SCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhh-ccC-CCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999767 8887 6 666 66666542111 122 236666666777776431 2345788888
Q ss_pred HHHHHHHHhhccCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCce
Q 011567 375 KNTAILRTGLSDIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGI 451 (483)
Q Consensus 375 ~~~~~l~~~L~~~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~l 451 (483)
++.+++.+.|+++. ++++..+..+.++++.+ +. ..+ ..+++++||.+.+ .+
T Consensus 332 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~---------~~---~~~-~~~l~~~gi~v~~-------------~~ 385 (412)
T 1yaa_A 332 KMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL---------TP---QMV-KRLEETHAVYLVA-------------SG 385 (412)
T ss_dssp HHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC---------CH---HHH-HHHHHHHCEECCT-------------TS
T ss_pred HHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCC---------CH---HHH-HHHHHhCCEEecc-------------Cc
Confidence 89999999998763 36655443444444322 11 133 4456566999864 28
Q ss_pred EEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 452 RLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 452 Ri~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
||+++. +|++++++++++|+++++.
T Consensus 386 Ris~~~-~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 386 RASIAG-LNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp EEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred EEEEcc-CCHhHHHHHHHHHHHHHHh
Confidence 999974 6999999999999998764
No 174
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.93 E-value=5.6e-25 Score=228.25 Aligned_cols=336 Identities=15% Similarity=0.173 Sum_probs=223.5
Q ss_pred eEEEeecC-CCCCCCCChHHHHHHHHHHHh-cCCCCCCCCCcccChH----HHHHHHHHHHhhhCCCC-----EEEeccc
Q 011567 110 EVVNFASA-NYLGLIGHEKLLESCTSALEK-YGVGSCGPRGFYGTID----VHLDCEARIAKFLGTPD-----SILYSYG 178 (483)
Q Consensus 110 ~~id~~s~-~~lG~~~~p~i~~a~~~~l~~-~g~g~~~~~~~~g~~~----~~~~l~~~La~~~g~e~-----~i~~~sG 178 (483)
+.|++..+ |+ .+|.+.+++.+.+.. |..|..+++. |+..+ +...+++++++++|.+. .+++++|
T Consensus 45 ~~i~L~a~e~~----~~~~V~eA~~~~l~~~~~~g~p~~~~-y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sG 119 (483)
T 1rv3_A 45 VGLELIASENF----ASRAVLEALGSCLNNKYSLGYPGQRY-YGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSG 119 (483)
T ss_dssp SSEECCTTCCC----CCHHHHHHHTSGGGTCCCCEETTEES-SSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSH
T ss_pred cCeEEEcCCCC----CCHHHHHHHHHHHhccCcccCCCccc-cCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCc
Confidence 35777655 33 568999999888875 4334444443 33333 33455589999999763 3788999
Q ss_pred HHHHHhhhhhhccCCcEEEEcCCchhHHHh--------HhhhcC--CeEEEecC------CCHHHHHHHHHHhhhhhhhc
Q 011567 179 LSTMFSAIPCFCKKGDLIVADEGVHWGIQN--------GLYLSR--STVVYFKH------NDMDSLRNTLERVTADNKRA 242 (483)
Q Consensus 179 ~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~--------g~~~s~--~~v~~~~~------~d~~~Le~~l~~~~~~~~~~ 242 (483)
++++..++.++.++||.|++....|.++.. ++..+| ...+.++. .|+++|++.+++.
T Consensus 120 s~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~------- 192 (483)
T 1rv3_A 120 SPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLF------- 192 (483)
T ss_dssp HHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhc-------
Confidence 999999899999999999999988877653 334444 44555522 3788999888642
Q ss_pred cCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCC
Q 011567 243 KKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATE 321 (483)
Q Consensus 243 ~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~ 321 (483)
++++|++ +..+++ .+.|+++|+++|++||+++|+|++|+.|.... | ... ..+ ..+|++++|++|+| |+.
T Consensus 193 --~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~-~--~~~-~p~--~~~div~~s~~K~l~Gpr 262 (483)
T 1rv3_A 193 --HPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVA-G--VVP-SPF--EHCHVVTTTTHKTLRGCR 262 (483)
T ss_dssp --CCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHH-T--SSC-CGG--GTCSEEEEESSGGGCCCS
T ss_pred --CCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhccccc-C--CCC-CCC--CCCcEEEecCcccCCCCC
Confidence 2567777 666665 88999999999999999999999998765431 1 110 000 14589999999999 677
Q ss_pred CceeeccHH---------------HHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhh
Q 011567 322 GGFCTGSAR---------------VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGL 384 (483)
Q Consensus 322 GG~i~~~~~---------------~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L 384 (483)
||+++++++ +.+.+.....+.. .++.+....++..++++.+.+ .++..+++.++++++.+.|
T Consensus 263 gG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~-~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L 341 (483)
T 1rv3_A 263 AGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGL-QGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAAL 341 (483)
T ss_dssp CEEEEEECSBCC-------CCBCCHHHHHHHHHTTTT-CCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcc-cCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH
Confidence 899988764 3333322111111 223344444555566766542 2467888999999999999
Q ss_pred ccCCCceeecCC-CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCC---
Q 011567 385 SDIHGLSIASNP-ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHS--- 460 (483)
Q Consensus 385 ~~~~~~~i~~~~-~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t--- 460 (483)
.+. |+++..+. .+.++++.+.... .+ ..++.+ .|++.||.+.....|.......+.++||+++..+|
T Consensus 342 ~~~-g~~~~~~~~~~~~~~v~~~~~g----~~---~~~~~~-~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~ 412 (483)
T 1rv3_A 342 VEL-GYKIVTGGSDNHLILVDLRSKG----TD---GGRAEK-VLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGL 412 (483)
T ss_dssp HHT-TCEEGGGSCSSSEEEEEGGGGT----CC---HHHHHH-HHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTC
T ss_pred Hhc-CCEeccCCCCCceEEEeccCCC----CC---HHHHHH-HHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCC
Confidence 987 88887543 3456677764211 01 123444 46667999983322211000113569999986556
Q ss_pred -HHHHHHHHHHHHHHHHH
Q 011567 461 -EADLVKACESLKRISAV 477 (483)
Q Consensus 461 -~edi~~~~~~l~~~~~~ 477 (483)
++|+++++++|+++++.
T Consensus 413 ~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 413 LEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 99999999999998876
No 175
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.93 E-value=1.6e-24 Score=222.53 Aligned_cols=345 Identities=13% Similarity=0.112 Sum_probs=219.8
Q ss_pred eEE-EeecCCCCCCCCChHHHHHHHHHHHhcCCC-------C--CCCCCcccChHHHHHHHHHHHhhh------C--CCC
Q 011567 110 EVV-NFASANYLGLIGHEKLLESCTSALEKYGVG-------S--CGPRGFYGTIDVHLDCEARIAKFL------G--TPD 171 (483)
Q Consensus 110 ~~i-d~~s~~~lG~~~~p~i~~a~~~~l~~~g~g-------~--~~~~~~~g~~~~~~~l~~~La~~~------g--~e~ 171 (483)
.+| ||+.+++-. .|.+.+++.+++.+.... . ......|+......++++.+|+++ + .++
T Consensus 32 ~~i~~l~~g~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~ 108 (444)
T 3if2_A 32 QPVNMLGGGNPAK---IDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSEN 108 (444)
T ss_dssp SCCEECSCCCCCC---CHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGG
T ss_pred hhhhccCCCCCCc---ccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHH
Confidence 567 888775432 366666666666553211 1 000112333333567778888776 2 356
Q ss_pred EEEecccHHHHHhhhhhhccCCc--------------EEEE-cCCchhHHHhH------hhhcCCeEEEecC--------
Q 011567 172 SILYSYGLSTMFSAIPCFCKKGD--------------LIVA-DEGVHWGIQNG------LYLSRSTVVYFKH-------- 222 (483)
Q Consensus 172 ~i~~~sG~~a~~~ai~~~~~~gd--------------iI~~-~~~~h~s~~~g------~~~s~~~v~~~~~-------- 222 (483)
.+++++|++|+..++++++++|| .|++ ..+.|..+... +...+..++.++.
T Consensus 109 i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 188 (444)
T 3if2_A 109 IALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFK 188 (444)
T ss_dssp EEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEE
T ss_pred EEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecccccccCccc
Confidence 77778889999999999998887 5555 46666555442 2334556655552
Q ss_pred --CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccc
Q 011567 223 --NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT 297 (483)
Q Consensus 223 --~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~ 297 (483)
-|+++|++.+++... .+++|+++.+++++|.+.| +++|+++|++||+++|+||+|+.+..+....+..
T Consensus 189 ~~~d~~~l~~~l~~~~~-------~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~ 261 (444)
T 3if2_A 189 YRVDFEALENLPALKEG-------RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAH 261 (444)
T ss_dssp EECCHHHHHTCHHHHTT-------CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCC
T ss_pred cCCCHHHHHHHHHhcCC-------CceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccccccccc
Confidence 388888887654333 2677777777889999999 8999999999999999999997543221111111
Q ss_pred cccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh---cCcH-HH
Q 011567 298 EHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE---ENPD-LI 370 (483)
Q Consensus 298 ~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~---~~~~-~~ 370 (483)
....+.+++++|+||+ +..| ||+++++++++.++.....+.++. +++.++++.+.++... ...+ +.
T Consensus 262 ----~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~a~~~~l~~~~~~~~~~~~~~ 334 (444)
T 3if2_A 262 ----LNWDNNTILCFSLSKI-GLPGMRTGIIVADAKVIEAVSAMNAVVNLAP--TRFGAAIATPLVANDRIKQLSDNEIK 334 (444)
T ss_dssp ----CCCCTTEEEEEESTTT-TCGGGCCEEEECCHHHHHHHHHHHHHHHSSC--CCHHHHHHHHHHHTSHHHHHHHHTHH
T ss_pred ----ccCCCCEEEEechhhc-cCCCCceEEEEECHHHHHHHHHHHHhccCCC--ChHHHHHHHHHHHcCchhHHHHHHHH
Confidence 0113458889999997 4334 899999999988766544444443 4455555555554221 1111 45
Q ss_pred HHHHHHHHHHHHhhcc-CC--CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCC-
Q 011567 371 TKLKKNTAILRTGLSD-IH--GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCR- 446 (483)
Q Consensus 371 ~~l~~~~~~l~~~L~~-~~--~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~- 446 (483)
+.++++.+.+.+.|.+ ++ ++.+..+..+.++++.++.... + ..+++..+ .++||.+.++..+......
T Consensus 335 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~----~---~~~l~~~l-~~~gi~v~~g~~~~~~~~~~ 406 (444)
T 3if2_A 335 PFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPI----S---TLDLYERL-KAKGTLIVPSEYFFPGVDVS 406 (444)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSS----C---HHHHHHHH-HHTTEECEEGGGSCTTCCCT
T ss_pred HHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCC----C---HHHHHHHH-HHCCeEEecchhhcCCCCCc
Confidence 5566666677666654 33 4556555567888888853110 1 23456654 5569999987653221100
Q ss_pred ----CCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567 447 ----LPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD 481 (483)
Q Consensus 447 ----~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~ 481 (483)
.+..+||+++. |+++|++++++|+++++++..+
T Consensus 407 ~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~~~~~ 443 (444)
T 3if2_A 407 DYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRELYDN 443 (444)
T ss_dssp TCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHHHHcc
Confidence 11359999986 9999999999999999988654
No 176
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.93 E-value=5.6e-25 Score=224.33 Aligned_cols=327 Identities=11% Similarity=0.036 Sum_probs=216.0
Q ss_pred eeEEEeecCC---CCCCC-CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC---CC---CEEEeccc
Q 011567 109 KEVVNFASAN---YLGLI-GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG---TP---DSILYSYG 178 (483)
Q Consensus 109 ~~~id~~s~~---~lG~~-~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g---~e---~~i~~~sG 178 (483)
..+|||+.+. ..+.. ..|.+.+++.+++++.+....+ ...|..++...+++.+....+ .+ +.+++++|
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~ 126 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYL--PIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGG 126 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCC--CCCCcHHHHHHHHHHhcCCCccccccCceEEEECCcc
Confidence 3689999984 44442 2379999999998873221111 123444444444444443333 23 34566788
Q ss_pred HHHHHhhhh--hhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC----C---CHHHHHHHHHHhhhhhhhccCccEEE
Q 011567 179 LSTMFSAIP--CFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH----N---DMDSLRNTLERVTADNKRAKKLRRYI 249 (483)
Q Consensus 179 ~~a~~~ai~--~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~----~---d~~~Le~~l~~~~~~~~~~~~~~~~i 249 (483)
++|+..+++ ++.++||.|+++.++|.++...++..|.+++.++. + |+++|++.+++..+ +++++
T Consensus 127 t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~-------~~~~v 199 (420)
T 4f4e_A 127 TGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEP-------GTIVV 199 (420)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCT-------TCEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCC-------CCEEE
Confidence 899998854 56789999999999999999999999999988876 3 78888888864322 37889
Q ss_pred EEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCC--CCccccccCCCCCceeEEEccccccccCCC--
Q 011567 250 VVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRS--GRGLTEHCGVPVDKIDIVTAAMGHALATEG-- 322 (483)
Q Consensus 250 v~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~--G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-- 322 (483)
+++.++|++|.+.+ +++|+++|++||+++|+||+|+.+.++.. ...+....+. .+.+++++|+||++|..|
T Consensus 200 ~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~~~G~R 277 (420)
T 4f4e_A 200 LHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAA--NLNVFVSSSFSKSFSLYGER 277 (420)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHT--TCCEEEEEECTTTTTCGGGC
T ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhc--CCCEEEEEeCCccCcCcCCC
Confidence 99999999999977 67899999999999999999987665421 1111122222 234788999999999766
Q ss_pred -ceee---ccHHHHHHH----HhcCCceeecCCCcHHHHHHHHHHHHHH-------hcCcHHHHHHHHHHHHHHHhhccC
Q 011567 323 -GFCT---GSARVVDHQ----RLSSSGYVFSASLPPYLASAAITAIDVL-------EENPDLITKLKKNTAILRTGLSDI 387 (483)
Q Consensus 323 -G~i~---~~~~~~~~~----~~~~~~~~fs~~~~p~~~aaa~~al~~l-------~~~~~~~~~l~~~~~~l~~~L~~~ 387 (483)
||++ +++++++.+ +... ...++. .|+..+.++.+.++.. +..++++++++++.+++.+.|+++
T Consensus 278 iG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 355 (420)
T 4f4e_A 278 VGALSIITDSKDEAARVLSQLKRVI-RTNYSN-PPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAA 355 (420)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHH-HTTTSS-CCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEcCCHHHHHHHHHHHHHHH-hcccCC-CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8864 355655432 2111 011222 2444444444444321 112457888899999999999876
Q ss_pred ---CCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHH
Q 011567 388 ---HGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADL 464 (483)
Q Consensus 388 ---~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi 464 (483)
.++.+..+..+.+.++.+. . +.+..+++++||++.+. .|+++. .+|++++
T Consensus 356 ~~~~~~~~~~~~~g~~~~~~~~---------~----~~~~~~l~~~gI~v~~~-------------~Ris~~-~~~~~~i 408 (420)
T 4f4e_A 356 GIERDFSFINAQRGMFSYSGLT---------S----AQVDRLREEFGIYAVST-------------GRICVA-ALNTRNL 408 (420)
T ss_dssp TCSSCCTHHHHSCSSEEECCCC---------H----HHHHHHHHHHCEECCTT-------------SEEEGG-GCCTTTH
T ss_pred CCCCCceeECCCccEEEEeCCC---------H----HHHHHHHHhCCEEecCC-------------CeEEEe-cCCHHHH
Confidence 3666554445555554441 1 12334555669988642 599985 4578889
Q ss_pred HHHHHHHHHHH
Q 011567 465 VKACESLKRIS 475 (483)
Q Consensus 465 ~~~~~~l~~~~ 475 (483)
++++++|++++
T Consensus 409 ~~~~~~l~~~l 419 (420)
T 4f4e_A 409 DVVANAIAAVL 419 (420)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 177
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.93 E-value=4e-24 Score=214.79 Aligned_cols=288 Identities=13% Similarity=0.094 Sum_probs=206.6
Q ss_pred HHHHHHHHHHhhhCC------CCEEEecccHHHHHhhhhhhc---cCCcEEEEc-CCc-hhHHHhHhhhcCCeEEEecC-
Q 011567 155 VHLDCEARIAKFLGT------PDSILYSYGLSTMFSAIPCFC---KKGDLIVAD-EGV-HWGIQNGLYLSRSTVVYFKH- 222 (483)
Q Consensus 155 ~~~~l~~~La~~~g~------e~~i~~~sG~~a~~~ai~~~~---~~gdiI~~~-~~~-h~s~~~g~~~s~~~v~~~~~- 222 (483)
...+++++++++++. ++.++.++|++++..+++++. ++||.|++. .++ |.++...+...|.+++.++.
T Consensus 39 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~ 118 (385)
T 2bkw_A 39 IFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPL 118 (385)
T ss_dssp HHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCS
T ss_pred HHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecC
Confidence 466788999999875 345566888999999999987 889876544 444 44444667778888888876
Q ss_pred -----CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHc--CcEEEEeCccccccccCCCCc
Q 011567 223 -----NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKY--RFRVFLDESNSFGVLGRSGRG 295 (483)
Q Consensus 223 -----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~--~~~li~DEa~s~g~lg~~G~g 295 (483)
.|+++|++.+++. ++++|+++++++++|.+.|+++|+++|++| |+++|+||+|++|...
T Consensus 119 ~~~~~~d~~~l~~~l~~~---------~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~----- 184 (385)
T 2bkw_A 119 KIGESVPLELITEKLSQN---------SYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEE----- 184 (385)
T ss_dssp STTSCCCHHHHHHHHHHS---------CCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSC-----
T ss_pred CCCCCCCHHHHHHHHhcC---------CCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCcc-----
Confidence 3788888887641 256888899999999999999999999999 9999999999865321
Q ss_pred cccccCCCCCceeEEEcccccccc-CCC-ceeeccHHHHH-HHHh----------------------cCCc-eeecCCCc
Q 011567 296 LTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSARVVD-HQRL----------------------SSSG-YVFSASLP 349 (483)
Q Consensus 296 ~~~~~~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~~~~-~~~~----------------------~~~~-~~fs~~~~ 349 (483)
+++...++|++++|++|+++ +.| |+++++++.++ .++. ...+ ..+..+.+
T Consensus 185 ----~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (385)
T 2bkw_A 185 ----FEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPP 260 (385)
T ss_dssp ----CCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCC
T ss_pred ----ccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCC
Confidence 12222245899999999885 456 88888888766 4310 0000 01123456
Q ss_pred HHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhh-ccCCCceeecC-----CCCCEEEEEecCCCCCchhhHHHHHH
Q 011567 350 PYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGL-SDIHGLSIASN-----PESPIVFLILEKSTGSMKNDLQLLED 421 (483)
Q Consensus 350 p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L-~~~~~~~i~~~-----~~~~i~~l~l~~~~~~~~~~~~~~~~ 421 (483)
+..++++.++++.+.+ .++.+++++++++++.+.| +++ ++.+... ..++++++.+++ ..+
T Consensus 261 ~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 328 (385)
T 2bkw_A 261 VQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVAD-----------PPD 328 (385)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECSC-----------HHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-CceecccCcccccCCceEEEecCC-----------HHH
Confidence 7777777788887653 2467888999999999999 887 8877642 246788887731 235
Q ss_pred HHHHHHHhCCEEEEeecccccccCCCCCceEEE-cc---CCCCHHHHHHHHHHHHHHHHH
Q 011567 422 IADWALKEDGVFVVTSKRSMLDKCRLPVGIRLF-VS---AAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 422 i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~-~~---~~~t~edi~~~~~~l~~~~~~ 477 (483)
+.+.+. ++||.+.+...+.. .+..+|++ ++ ..+|++|+++++++|++++++
T Consensus 329 ~~~~l~-~~gi~v~~g~~~~~----~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 329 VIAFLK-SHGVVIAGGIHKDI----GPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp HHHHHH-HTTEECBCCCCTTT----GGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHH-HCCeEEeCCCCccc----CCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 666554 56999987543211 12449999 54 257999999999999987643
No 178
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.93 E-value=1.7e-23 Score=218.50 Aligned_cols=313 Identities=13% Similarity=0.105 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHhhhCCC----CEEEecccHHHHHhhhhhhcc--------------CCcEEEEcCCchhHHHhHhhhcCC
Q 011567 154 DVHLDCEARIAKFLGTP----DSILYSYGLSTMFSAIPCFCK--------------KGDLIVADEGVHWGIQNGLYLSRS 215 (483)
Q Consensus 154 ~~~~~l~~~La~~~g~e----~~i~~~sG~~a~~~ai~~~~~--------------~gdiI~~~~~~h~s~~~g~~~s~~ 215 (483)
.+..++.+++++++|.+ ..+++++|++|+..++.+... +++.|+++...|.++.++++..|.
T Consensus 135 ~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~ 214 (511)
T 3vp6_A 135 LMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGF 214 (511)
T ss_dssp HHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHcCC
Confidence 45556666778888865 456778999999888766543 577999999999999999999887
Q ss_pred ---eEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccc
Q 011567 216 ---TVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFG 287 (483)
Q Consensus 216 ---~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g 287 (483)
+++.++.+ |+++|++.+++.... ...+++|++...++++|.+.||++|.++|++||+++++|++|++|
T Consensus 215 g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~----g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~ 290 (511)
T 3vp6_A 215 GTDNVILIKCNERGKIIPADFEAKILEAKQK----GYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGG 290 (511)
T ss_dssp CGGGEEEECBCTTSCBCHHHHHHHHHHHHHT----TCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGG
T ss_pred CCCcEEEeecCCCCccCHHHHHHHHHHHHhc----CCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhh
Confidence 88888865 899999999764321 123678888889999999999999999999999999999999987
Q ss_pred cccC-CCCccccccCCCCCceeEEEccccccccCC---CceeeccHHHHHHHHhcCCceeecCC----------------
Q 011567 288 VLGR-SGRGLTEHCGVPVDKIDIVTAAMGHALATE---GGFCTGSARVVDHQRLSSSGYVFSAS---------------- 347 (483)
Q Consensus 288 ~lg~-~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~---GG~i~~~~~~~~~~~~~~~~~~fs~~---------------- 347 (483)
.+.. ..+.. ..|+ ..+|+++++.+|+++.+ |++++.++...+........|.+...
T Consensus 291 ~~~~~~~~~~--~~g~--~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 366 (511)
T 3vp6_A 291 LLMSRKHRHK--LNGI--ERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQC 366 (511)
T ss_dssp GGGCTTTGGG--GTTG--GGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCS
T ss_pred HhhChhhhhh--ccCC--ccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCC
Confidence 7532 11111 1133 35599999999999732 33455566655554332333332111
Q ss_pred CcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCCceeec--CCCCCEEEEEecCCCCC----ch----hh
Q 011567 348 LPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIAS--NPESPIVFLILEKSTGS----MK----ND 415 (483)
Q Consensus 348 ~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~--~~~~~i~~l~l~~~~~~----~~----~~ 415 (483)
..+..+.+..++++.+. ..++++++..++++++++.|++.+|+++.. .+..+++.+++.+.... .. ..
T Consensus 367 ~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l 446 (511)
T 3vp6_A 367 GRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKL 446 (511)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHH
Confidence 00112233334444332 225688999999999999999988999876 46778888876432110 00 11
Q ss_pred HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc-cCCCCHHHHHHHHHHHHHHHHHHH
Q 011567 416 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRISAVVL 479 (483)
Q Consensus 416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~-~~~~t~edi~~~~~~l~~~~~~~~ 479 (483)
.....++.+.+++++.+++.......- ...+|+++ +..+|++||++++++|+++.+.+.
T Consensus 447 ~~~~~~l~~~L~~~G~~~~~~~~~~~~-----~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~~ 506 (511)
T 3vp6_A 447 HKVAPKIKALMMESGTTMVGYQPQGDK-----ANFFRMVISNPAATQSDIDFLIEEIERLGQDLH 506 (511)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEEEETTE-----EEEEEECCCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcCCEEEEEEEeCCc-----eEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 123456777777663344432111100 01399998 788999999999999998876553
No 179
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.93 E-value=7.4e-24 Score=219.30 Aligned_cols=304 Identities=12% Similarity=0.073 Sum_probs=207.4
Q ss_pred HHHHHHHHHHhhhCCC-----------CEEEecccHHHHHhhhhhhcc-------------------CCcEEEEcCCchh
Q 011567 155 VHLDCEARIAKFLGTP-----------DSILYSYGLSTMFSAIPCFCK-------------------KGDLIVADEGVHW 204 (483)
Q Consensus 155 ~~~~l~~~La~~~g~e-----------~~i~~~sG~~a~~~ai~~~~~-------------------~gdiI~~~~~~h~ 204 (483)
+..++.+++++++|.+ ..+++++|+++|..++.+... +++.|+++...|.
T Consensus 114 lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~ 193 (475)
T 3k40_A 114 LEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHS 193 (475)
T ss_dssp HHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCH
T ss_pred HHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchH
Confidence 4444455567778876 367789999999888765421 3468999999999
Q ss_pred HHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEE
Q 011567 205 GIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFL 280 (483)
Q Consensus 205 s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~ 280 (483)
++.+++...|.+++.++.+ |+++|++.+++.... ...+.+|++....+++|.+.|+++|.++|++||+++++
T Consensus 194 s~~~~~~~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~----~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhv 269 (475)
T 3k40_A 194 SVERAGLLGGVKLRSVQSENHRMRGAALEKAIEQDVAE----GLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHV 269 (475)
T ss_dssp HHHHHHHHHTCEEEEECCBTTBCCHHHHHHHHHHHHHT----TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCceEEEECCCCCcCHHHHHHHHHHHHHC----CCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEE
Confidence 9999999999999998874 899999999764321 11245566666677789999999999999999999999
Q ss_pred eCccccccc-cCCCCccccccCCCCCceeEEEccccccccCC---CceeeccHHHH-HHHHhcCCcee------------
Q 011567 281 DESNSFGVL-GRSGRGLTEHCGVPVDKIDIVTAAMGHALATE---GGFCTGSARVV-DHQRLSSSGYV------------ 343 (483)
Q Consensus 281 DEa~s~g~l-g~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~---GG~i~~~~~~~-~~~~~~~~~~~------------ 343 (483)
|++|+++.+ +...++.. .++ ..+|.++.+.+|+++.+ |++++.++... +.+.. ...|.
T Consensus 270 D~A~~~~~~~~~~~~~~~--~gi--~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~-~~~yl~~~~~~~~~~~~ 344 (475)
T 3k40_A 270 DAAYAGSAFICPEYRHLM--KGI--ESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNV-DPLYLKHDMQGSAPDYR 344 (475)
T ss_dssp ECTTGGGGGGSGGGGGGG--TTG--GGCSEEEECHHHHSSCCSSCEEEEESSGGGC------------------------
T ss_pred eHHhHHHHHhCHhhHHHh--cCc--ccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcC-CccccCCCcCCCCCCcc
Confidence 999987653 22222221 233 34589999999999732 33445554432 22211 11111
Q ss_pred ---ecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHH
Q 011567 344 ---FSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQL 418 (483)
Q Consensus 344 ---fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~ 418 (483)
...+. +..+....++++.+. ...+++++..++++++++.|++++++++..++..+++++++... ...
T Consensus 345 ~~~~~~sr-~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~-------~~~ 416 (475)
T 3k40_A 345 HWQIPLGR-RFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGS-------NER 416 (475)
T ss_dssp ----CCCG-GGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSC-------HHH
T ss_pred cccccCCC-cccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCc-------hHH
Confidence 11111 122333334454443 22468889999999999999998899998777889999998531 223
Q ss_pred HHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccC-CCCHHHHHHHHHHHHHHHHHHHhc
Q 011567 419 LEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSA-AHSEADLVKACESLKRISAVVLRD 481 (483)
Q Consensus 419 ~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~-~~t~edi~~~~~~l~~~~~~~~~~ 481 (483)
..++.+++.+++++++.+..... ...+|+++.. ..|++||++++++|++++++++.+
T Consensus 417 ~~~l~~~L~~~g~~~~~~~~~~g------~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~~~ 474 (475)
T 3k40_A 417 NEALLKRINGRGHIHLVPAKIKD------VYFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQE 474 (475)
T ss_dssp HHHHHHHHHHHTSCBCEEEEETT------EEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCcEEEEeeEECC------EEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 45778877777555555432211 1349999764 458999999999999999988753
No 180
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.93 E-value=6e-25 Score=222.06 Aligned_cols=323 Identities=15% Similarity=0.103 Sum_probs=213.8
Q ss_pred eeEEEeecCC---CCCCC-CChHHHHHHHH-HHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh----C---CC---CEE
Q 011567 109 KEVVNFASAN---YLGLI-GHEKLLESCTS-ALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL----G---TP---DSI 173 (483)
Q Consensus 109 ~~~id~~s~~---~lG~~-~~p~i~~a~~~-~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~----g---~e---~~i 173 (483)
..++||+.+. +.+.. .+|.+.+++.+ .++..+....++ ..|. .++++.+++++ + .+ +.+
T Consensus 26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~--~~g~----~~lr~~la~~~~~~~~~~~~~~~~~i~ 99 (397)
T 3fsl_A 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLP--MEGL----NCYRHAIAPLLFGADHPVLKQQRVATI 99 (397)
T ss_dssp SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCC--TTCC----HHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCC--CCch----HHHHHHHHHHHhcCCcccccccceEEE
Confidence 3589999984 44442 23799999998 887643321111 2333 44555555554 3 23 345
Q ss_pred EecccHHHHHhhhh--hhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC----C---CHHHHHHHHHHhhhhhhhccC
Q 011567 174 LYSYGLSTMFSAIP--CFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH----N---DMDSLRNTLERVTADNKRAKK 244 (483)
Q Consensus 174 ~~~sG~~a~~~ai~--~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~----~---d~~~Le~~l~~~~~~~~~~~~ 244 (483)
++++|++++..+++ ++.++||.|+++.+.|.++...++..|.+++.++. + |+++|++.+++...
T Consensus 100 ~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~------- 172 (397)
T 3fsl_A 100 QTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQA------- 172 (397)
T ss_dssp EESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCT-------
T ss_pred EcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCC-------
Confidence 56778899988854 55689999999999999999999999999998887 4 78888888865322
Q ss_pred ccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCC--CccccccCCCCCceeEEEcccccccc
Q 011567 245 LRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSG--RGLTEHCGVPVDKIDIVTAAMGHALA 319 (483)
Q Consensus 245 ~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G--~g~~~~~~v~~~~~Di~~~s~~K~lg 319 (483)
++++++++.+++++|.+.+ +++|+++|++||+++|+||+|+.+..+..+ ..+....+. .+.+++++|+||++|
T Consensus 173 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~ 250 (397)
T 3fsl_A 173 GSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASA--GLPALVSNSFSKIFS 250 (397)
T ss_dssp TCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHT--TCCEEEEEECTTTTT
T ss_pred CCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhc--CCCEEEEeccccccc
Confidence 3688888889999999977 679999999999999999999887654211 111121122 234788899999998
Q ss_pred CCC---ceee---ccHHHHHHHHhcCCc---eeecCCCcHHHHHHHHHHHHH-------HhcCcHHHHHHHHHHHHHHHh
Q 011567 320 TEG---GFCT---GSARVVDHQRLSSSG---YVFSASLPPYLASAAITAIDV-------LEENPDLITKLKKNTAILRTG 383 (483)
Q Consensus 320 ~~G---G~i~---~~~~~~~~~~~~~~~---~~fs~~~~p~~~aaa~~al~~-------l~~~~~~~~~l~~~~~~l~~~ 383 (483)
..| ||++ ++++.++.+...... ..++ +.++...+++.++++. .+..++.+++++++.+++.+.
T Consensus 251 ~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 329 (397)
T 3fsl_A 251 LYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYS-SPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKV 329 (397)
T ss_dssp CGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTS-SCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccC-CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766 8875 355555533211101 1111 1233444444333331 122245788889999999999
Q ss_pred hccCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCC
Q 011567 384 LSDIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHS 460 (483)
Q Consensus 384 L~~~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t 460 (483)
|+++. ++.+..+..+.++++.+. . +.+..+++++||.+.++ -||++. .+|
T Consensus 330 L~~~~~~~~~~~~~~~~~~~~~~~~~--------~-----~~~~~~l~~~gi~v~~g-------------~Ris~~-~~~ 382 (397)
T 3fsl_A 330 LSTEMPERNFDYLLNQRGMFSYTGLS--------A-----AQVDRLREEFGVYLIAS-------------GRMCVA-GLN 382 (397)
T ss_dssp HHHHCTTSCCTHHHHCCSSEEECCCC--------H-----HHHHHHHHTTCEECCTT-------------CEEEGG-GCC
T ss_pred HHhcCCCCCceeecCCceEEEecCCC--------H-----HHHHHHHHhCCEEECCC-------------CeEEEE-ecC
Confidence 98764 566554445555555441 1 12344567789999743 289885 457
Q ss_pred HHHHHHHHHHHHHH
Q 011567 461 EADLVKACESLKRI 474 (483)
Q Consensus 461 ~edi~~~~~~l~~~ 474 (483)
+++|++++++|+++
T Consensus 383 ~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 383 TANVQRVAKAFAAV 396 (397)
T ss_dssp TTTHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHhh
Confidence 78899999999875
No 181
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.93 E-value=4.9e-25 Score=219.66 Aligned_cols=313 Identities=15% Similarity=0.160 Sum_probs=210.5
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCc--EEEEcCCc
Q 011567 125 HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGD--LIVADEGV 202 (483)
Q Consensus 125 ~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gd--iI~~~~~~ 202 (483)
+|++.+++.+.+.. ..|+..+...++++++++++|.+..+++++|++|+..+++++.+++| +|+++..+
T Consensus 28 ~p~v~~ai~~~~~~---------~~~~~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~~g~~~vvi~~~~~ 98 (359)
T 3pj0_A 28 LTEALQNIDDNLES---------DIYGNGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLS 98 (359)
T ss_dssp HHHHTTTSCTTCBC---------CBTTBSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTC
T ss_pred CHHHHHHHHhhccc---------CcccCCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHhcCCCcEEEEeccc
Confidence 46666666552211 24566678899999999999999888889999999999999987776 47888888
Q ss_pred hhHHHhH--h-hhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC-CCccCh---HHHHHHH
Q 011567 203 HWGIQNG--L-YLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS-GQIAPL---DELIRLK 271 (483)
Q Consensus 203 h~s~~~g--~-~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~-G~i~~L---~~l~~l~ 271 (483)
|...... + ...|.+++.++.+ |+++|++. .. ++++|+++++++++ |.+.|. ++|+++|
T Consensus 99 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~----~~-------~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~ 167 (359)
T 3pj0_A 99 HLEIHEQDGLKELQQITPLLLGTANQLLTIDDIKSL----RE-------PVSSVLIELPQREIGGQLPAFEELEKISEYC 167 (359)
T ss_dssp HHHHSSTTHHHHHHCCEEEECSCTTSCCCHHHHHTC----SS-------CCSEEEEESSBGGGTSBCCCHHHHHHHHHHH
T ss_pred eeeehhcchHHHhcCceEEecCCcCCCcCHHHHHhc----cC-------CceEEEEEecccCCCcccCCHHHHHHHHHHH
Confidence 8765432 2 4568888888754 66666654 12 36788888887665 788885 5559999
Q ss_pred HHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccC-CCceeeccHHHHHHHHhcCCceeecCCCcH
Q 011567 272 EKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT-EGGFCTGSARVVDHQRLSSSGYVFSASLPP 350 (483)
Q Consensus 272 ~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~-~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p 350 (483)
++||+++|+||+|.++.....|....+. . ...|+++.|++|++++ .||++++++++++.++.....+..+.....
T Consensus 168 ~~~~~~li~D~a~~~~~~~~~~~~~~~~-~---~~~d~~~~s~sK~~~~~~gg~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (359)
T 3pj0_A 168 HEQGISLHLDGARLWEITPFYQKSAEEI-C---ALFDSVYVSFYKGIGGIAGAILAGNDDFVQEAKIWKRRYGGDLISLY 243 (359)
T ss_dssp HHHTCEEEEEETTCGGGHHHHTCCHHHH-H---TTCSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHHHTTCCCSCCH
T ss_pred HHcCCEEEEECcchhcchhhhCCCHHHh-h---ccCCEEEEeccccCCCcceEEEECCHHHHHHHHHHHHHhCCCcchhH
Confidence 9999999999998765432212211111 1 2347888899999974 457888999998877542111111111123
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceee-cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHh
Q 011567 351 YLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA-SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKE 429 (483)
Q Consensus 351 ~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~-~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~ 429 (483)
..++++..+++... +..++..++.+++.+.|++++|+.+. .++.++++++.+..+ ......++.+.+. +
T Consensus 244 ~~~~a~~~~l~~~~---~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~l~-~ 313 (359)
T 3pj0_A 244 PYILSADYYFEKRI---GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENS------ADEIGAILTKIQD-E 313 (359)
T ss_dssp HHHHHHHHHHHHHG---GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSC------HHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCc------cchhHHHHHHHHH-h
Confidence 33344445665442 24556788889999999998898875 456788888888532 1122345666554 4
Q ss_pred CCEEEEeecccccccCCCCCceEEEccCC---CCHHHHHHHHHHHHHH
Q 011567 430 DGVFVVTSKRSMLDKCRLPVGIRLFVSAA---HSEADLVKACESLKRI 474 (483)
Q Consensus 430 ~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~---~t~edi~~~~~~l~~~ 474 (483)
+||.+.+...+..+ ....+|+++... .+.++++++++.|+++
T Consensus 314 ~GV~v~~g~~~~~~---~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 314 TGVGISGYLQEKSA---DVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp HCEECCSCCEEEET---TEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred cCcEecCCccccCC---CceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 59999877543210 012389887543 6789999988888765
No 182
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.93 E-value=3.7e-24 Score=211.47 Aligned_cols=303 Identities=13% Similarity=0.093 Sum_probs=218.0
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC---C--CCEEEecccHHHHH
Q 011567 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG---T--PDSILYSYGLSTMF 183 (483)
Q Consensus 109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g---~--e~~i~~~sG~~a~~ 183 (483)
++++||.++.+ .+..+|.+.+++.+++.+.+.. .|+.. ...++++.++++++ . ++.++.++|++++.
T Consensus 19 ~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~------~y~~~-~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~ 90 (335)
T 1uu1_A 19 RDKTYLALNEN-PFPFPEDLVDEVFRRLNSDALR------IYYDS-PDEELIEKILSYLDTDFLSKNNVSVGNGADEIIY 90 (335)
T ss_dssp CCSEEESSCCC-SSCCCHHHHHHHHHTCCGGGGG------SCCCS-SCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHH
T ss_pred CcceECCCCCC-CCCCCHHHHHHHHHHhhhhhhh------cCCCC-chHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHH
Confidence 36899988743 2335799999999887432211 12221 25789999999998 3 34555677789999
Q ss_pred hhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCC
Q 011567 184 SAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS 258 (483)
Q Consensus 184 ~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~ 258 (483)
.+++++ ||.|+++ +.|..+...++..|.+++.++.+ |+++| . ++++|++..+++++
T Consensus 91 ~~~~~~---gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l--------~-------~~~~v~l~~p~npt 151 (335)
T 1uu1_A 91 VMMLMF---DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVNV--------G-------EGDVVFIPNPNNPT 151 (335)
T ss_dssp HHHHHS---SEEEECS-SSCHHHHHHHHHHTCEEEECCCCTTSCCCCCCC--------C-------TTEEEEEESSCTTT
T ss_pred HHHHHh---CCcEEEC-CCcHHHHHHHHHcCCeEEEeccCCCCCCCHHHc--------C-------CCCEEEEeCCCCCC
Confidence 999988 7889999 99988888888889999888764 23333 1 25666655568889
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHHH
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDHQ 335 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~~ 335 (483)
|.+.|.+++.++++.+| ++|+||+|+.+..+ ......+. .+.+++++|+||++|..| ||+++++++++.+
T Consensus 152 G~~~~~~~l~~l~~~~~-~li~De~~~~~~~~----~~~~~~~~--~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l 224 (335)
T 1uu1_A 152 GHVFEREEIERILKTGA-FVALDEAYYEFHGE----SYVDFLKK--YENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAY 224 (335)
T ss_dssp CCCCCHHHHHHHHHTTC-EEEEECTTHHHHCC----CCGGGGGT--CSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHH
T ss_pred CCCCCHHHHHHHHHhCC-EEEEECcchhhcch----hHHHHhhh--CCCEEEEecchhhcCCcccCeEEEEeCHHHHHHH
Confidence 99999999999999989 99999999854211 22222222 334788999999998666 9999999998887
Q ss_pred HhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh
Q 011567 336 RLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND 415 (483)
Q Consensus 336 ~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~ 415 (483)
+..... | +.++..++++.++++..+..++..++++++.+++.+.|+++ |+.+. ++.++++++.++.
T Consensus 225 ~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~-------- 290 (335)
T 1uu1_A 225 NRVRLP--F--NVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM-GYRIT-DSRGNFVFVFMEK-------- 290 (335)
T ss_dssp HHHSCT--T--CSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEECCT--------
T ss_pred HHhcCC--C--CcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEc-CCCCeEEEEECCC--------
Confidence 665433 2 45777888887888753323457888889999999999886 77664 3467788777631
Q ss_pred HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567 416 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 474 (483)
Q Consensus 416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~ 474 (483)
....++.+.+++ +||.+.+. ++.+|+++. +++|+++++++|+++
T Consensus 291 -~~~~~~~~~l~~-~gi~v~~~----------~~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 291 -EEKERLLEHLRT-KNVAVRSF----------REGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp -HHHHHHHHHHHH-HTEEEEEE----------TTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred -CCHHHHHHHHHH-CCEEEEEC----------CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 123456776655 59999872 244999984 578899999998754
No 183
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.93 E-value=4.2e-24 Score=214.93 Aligned_cols=295 Identities=15% Similarity=0.115 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHhhhCCCCEEEe-cccHHHHHhhhhhhccCCcEEEEcCCchhHH-H-hHhhhcC--CeEEEec-------
Q 011567 154 DVHLDCEARIAKFLGTPDSILY-SYGLSTMFSAIPCFCKKGDLIVADEGVHWGI-Q-NGLYLSR--STVVYFK------- 221 (483)
Q Consensus 154 ~~~~~l~~~La~~~g~e~~i~~-~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~-~-~g~~~s~--~~v~~~~------- 221 (483)
+...++++.+++++|.++.+++ ++|++|+..++..+ ++||.|++....|++. . ..+...| .+++.++
T Consensus 35 ~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~ 113 (379)
T 3ke3_A 35 EVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVARQL-TIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDT 113 (379)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHHH-CTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHHhC-CCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEeccccccc
Confidence 4567889999999998776666 68999999888765 5777666655544432 2 2223333 3444443
Q ss_pred -------CCCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccC
Q 011567 222 -------HNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGR 291 (483)
Q Consensus 222 -------~~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~ 291 (483)
..|++++++.+++. ++++|++..+.+++|.+.| +++|+++|++||+++|+|++++ |...
T Consensus 114 ~~~~~~~~~d~~~l~~~i~~~---------~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~~~- 182 (379)
T 3ke3_A 114 EAPKPFAPVDIETAVAKIKED---------KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GCVW- 182 (379)
T ss_dssp SSCCCEECCCHHHHHHHHHHH---------TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TTCC-
T ss_pred cccCCCCCCCHHHHHHHHhhc---------CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CCcc-
Confidence 35888898888542 1557778888888999999 9999999999999999999987 5211
Q ss_pred CCCccccccCCCCCceeEEEccccccccC-CC-ceeeccHHHHHHHHhc-CCce-------------------eecCCCc
Q 011567 292 SGRGLTEHCGVPVDKIDIVTAAMGHALAT-EG-GFCTGSARVVDHQRLS-SSGY-------------------VFSASLP 349 (483)
Q Consensus 292 ~G~g~~~~~~v~~~~~Di~~~s~~K~lg~-~G-G~i~~~~~~~~~~~~~-~~~~-------------------~fs~~~~ 349 (483)
. -.+.+ ++|++++|++|++++ .| |++++++++++.++.. ..++ .|+.+.|
T Consensus 183 --~-~~~~~-----~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~ 254 (379)
T 3ke3_A 183 --L-DMKEL-----GIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMP 254 (379)
T ss_dssp --C-CHHHH-----TCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCC
T ss_pred --c-ccccc-----CCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCC
Confidence 0 11222 348999999999964 33 7889999988877541 1121 1233567
Q ss_pred HHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhhccCCCceeecCC--CCCEEEEEecCCCCCchhhHHHHHHHHHH
Q 011567 350 PYLASAAITAIDVLEEN--PDLITKLKKNTAILRTGLSDIHGLSIASNP--ESPIVFLILEKSTGSMKNDLQLLEDIADW 425 (483)
Q Consensus 350 p~~~aaa~~al~~l~~~--~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~--~~~i~~l~l~~~~~~~~~~~~~~~~i~~~ 425 (483)
+..++++.++++.+++. +++.++.+++.+++++.|+++ |+++..++ .++++.....+. .+ . ....
T Consensus 255 ~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~~-----~~---~-~~~~- 323 (379)
T 3ke3_A 255 TDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTER-----DD---M-HKGS- 323 (379)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECSC-----HH---H-HSSH-
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccCC-----cc---h-HHHH-
Confidence 88888888999988653 578889999999999999987 88776443 255443332110 11 1 1233
Q ss_pred HHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567 426 ALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVL 479 (483)
Q Consensus 426 ~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~ 479 (483)
.|.++||.+.+...+.+........+|++++..+|++||++++++|+++++++.
T Consensus 324 ~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 324 AFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp HHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 355679999877544321111124599999999999999999999999998765
No 184
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.93 E-value=2.4e-23 Score=212.56 Aligned_cols=324 Identities=17% Similarity=0.195 Sum_probs=223.1
Q ss_pred EeecC-CCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccC-hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhc
Q 011567 113 NFASA-NYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGT-IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFC 190 (483)
Q Consensus 113 d~~s~-~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~-~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~ 190 (483)
||..+ +.++ .++.+.+++.+.++. + .|+. .+...++++.+++++|.++++++++|++|+..+++++.
T Consensus 20 ~l~~~~p~~~--~p~~~~~a~~~~~~~-~--------~y~~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~ 88 (424)
T 2po3_A 20 PLLVGRPNRI--DRARLYERLDRALDS-Q--------WLSNGGPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG 88 (424)
T ss_dssp CEETTCCCCC--CHHHHHHHHHHHHHH-T--------CCSSSCHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT
T ss_pred cccccCCCCC--ChHHHHHHHHHHHhc-C--------CcccCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC
Confidence 45544 3333 347889999888875 2 2444 56788999999999999888888999999999999885
Q ss_pred cCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccCh
Q 011567 191 KKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPL 264 (483)
Q Consensus 191 ~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L 264 (483)
+||.|+++.+.|.++...+...|.+++.++.+ |+++|++.+++ ++++|++.+ ++|...++
T Consensus 89 -~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~----------~~~~v~~~~---~tG~~~~l 154 (424)
T 2po3_A 89 -LTGEVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVTP----------RTSAVVGVH---LWGRPCAA 154 (424)
T ss_dssp -CCSEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCT----------TEEEEEEEC---GGGCCCCH
T ss_pred -CCCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCc----------CCcEEEEEC---CCCCcCCH
Confidence 68999999999999999999999999888764 56666554432 256666543 46888999
Q ss_pred HHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccc--cccc-CCCceeecc-HHHHHHHHhcC-
Q 011567 265 DELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMG--HALA-TEGGFCTGS-ARVVDHQRLSS- 339 (483)
Q Consensus 265 ~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~--K~lg-~~GG~i~~~-~~~~~~~~~~~- 339 (483)
++|.++|++||+++|+||+|+.|.. ..|+. .+.-+ |++++|++ |+++ ..|||++++ +++++.++...
T Consensus 155 ~~i~~la~~~~~~li~Dea~~~g~~-~~~~~----~~~~~---di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~ 226 (424)
T 2po3_A 155 DQLRKVADEHGLRLYFDAAHALGCA-VDGRP----AGSLG---DAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHN 226 (424)
T ss_dssp HHHHHHHHHTTCEEEEECTTCTTCE-ETTEE----TTSSS---SEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHB
T ss_pred HHHHHHHHHcCCEEEEECccccCCe-ECCee----ccccc---CEEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHh
Confidence 9999999999999999999996543 22322 12112 68888988 8886 456899888 78877654321
Q ss_pred Cc----ee-----ecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCC---C--CCEEEEEe
Q 011567 340 SG----YV-----FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP---E--SPIVFLIL 405 (483)
Q Consensus 340 ~~----~~-----fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~---~--~~i~~l~l 405 (483)
.+ +. +...++++.+++++..++.++ +..++.+++.+++.+.|.+++++.+...+ . ..++.+.+
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~---~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~ 303 (424)
T 2po3_A 227 FGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFP---EVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEI 303 (424)
T ss_dssp TTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEE
T ss_pred cCccccccccccCcCCCcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEE
Confidence 11 11 112356777777776665543 47788888999999999987788776421 1 14555666
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccccc---------CCCCCc-------eEEEccCCCCHHHHHHHHH
Q 011567 406 EKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDK---------CRLPVG-------IRLFVSAAHSEADLVKACE 469 (483)
Q Consensus 406 ~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~---------~~~~~~-------lRi~~~~~~t~edi~~~~~ 469 (483)
++.. ......++.+. |.++||.+.+...+.+.. ...+.. ||++++..+|++|++++++
T Consensus 304 ~~~~-----~~~~~~~l~~~-L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~ 377 (424)
T 2po3_A 304 DEAT-----TGIHRDLVMEV-LKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVAD 377 (424)
T ss_dssp CHHH-----HSSCHHHHHHH-HHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHH
T ss_pred CCcc-----chhhHHHHHHH-HHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHH
Confidence 3200 00012345654 455799997632211110 001112 6676679999999999999
Q ss_pred HHHHHHHHH
Q 011567 470 SLKRISAVV 478 (483)
Q Consensus 470 ~l~~~~~~~ 478 (483)
+|++++++.
T Consensus 378 ~L~~~~~~~ 386 (424)
T 2po3_A 378 LLRLCATRG 386 (424)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 999988654
No 185
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.93 E-value=1.6e-24 Score=227.34 Aligned_cols=342 Identities=11% Similarity=0.051 Sum_probs=225.4
Q ss_pred eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC-------CCEEEecccHHHH
Q 011567 110 EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT-------PDSILYSYGLSTM 182 (483)
Q Consensus 110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~-------e~~i~~~sG~~a~ 182 (483)
.++||+.+++ ++ .+|.+.+++.+++...+ ...+ ..|..++...+++.+.+.++. ++.+++++|++++
T Consensus 104 ~~i~l~~g~~-~~-~~~~~v~a~~~~~~~~~--y~~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al 177 (533)
T 3f6t_A 104 DAVNYCHTEL-GL-NRDKVVAEWVNGAVANN--YPVP--DRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAI 177 (533)
T ss_dssp HHHHHHHHTT-CC-CHHHHHHHHHHHHHTCS--CCSS--SSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHH
T ss_pred hheeccCCCC-Cc-CCcHHHHHHHHHHHhCC--CCCC--cccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHH
Confidence 4677877654 44 46888888888886521 1111 234555666666666555233 3556667888999
Q ss_pred Hhhhhh-----hccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC---------CHHHHHHHHHHhhhhhhhccCccEE
Q 011567 183 FSAIPC-----FCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN---------DMDSLRNTLERVTADNKRAKKLRRY 248 (483)
Q Consensus 183 ~~ai~~-----~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~---------d~~~Le~~l~~~~~~~~~~~~~~~~ 248 (483)
..++.+ +.++||.|+++.+.|.++..++...+.+++.++.+ |+++|++.+.. ++++
T Consensus 178 ~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~----------~~k~ 247 (533)
T 3f6t_A 178 VYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDP----------SIKA 247 (533)
T ss_dssp HHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCT----------TEEE
T ss_pred HHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCC----------CCeE
Confidence 999887 78999999999999999999999999888877653 67777766532 2667
Q ss_pred EEEecccCCCCCccCh---HHHHHHHH-HcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC--
Q 011567 249 IVVEAVYQNSGQIAPL---DELIRLKE-KYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-- 322 (483)
Q Consensus 249 iv~e~v~~~~G~i~~L---~~l~~l~~-k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-- 322 (483)
|++..+++++|.+.|. ++|+++|+ +||+++|+||+|+.+..+ +..+.. .. .+.+++++|+||++|..|
T Consensus 248 v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~--~~~~~~---~~-~~~~i~~~S~SK~~g~~G~R 321 (533)
T 3f6t_A 248 LIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPN--FKSIYS---VV-PYNTMLVYSYSKLFGCTGWR 321 (533)
T ss_dssp EEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTT--CCCHHH---HS-GGGEEEEEESHHHHTCGGGC
T ss_pred EEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccC--ccCHhh---cC-CCCEEEEecCcccCCCcccc
Confidence 7777888889999985 58888888 699999999999864432 222221 11 245789999999999777
Q ss_pred -ceeeccHH-----HHHHHH-------------------------------hcCCceeecCCCcHHHHHHHHHHHHHHh-
Q 011567 323 -GFCTGSAR-----VVDHQR-------------------------------LSSSGYVFSASLPPYLASAAITAIDVLE- 364 (483)
Q Consensus 323 -G~i~~~~~-----~~~~~~-------------------------------~~~~~~~fs~~~~p~~~aaa~~al~~l~- 364 (483)
||++++++ +++.++ .....+.+++..++..++++..++..+.
T Consensus 322 iG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~ 401 (533)
T 3f6t_A 322 LGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLT 401 (533)
T ss_dssp EEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTT
T ss_pred eEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhh
Confidence 99988766 433220 1112223333334444444333344332
Q ss_pred ---------cCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh--------HHHHHHHHHHHH
Q 011567 365 ---------ENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND--------LQLLEDIADWAL 427 (483)
Q Consensus 365 ---------~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~--------~~~~~~i~~~~l 427 (483)
...++++.++++.+.+.+.|. + ++.+..+..+.++++.+.........+ .....+++.+++
T Consensus 402 ~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~-~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll 479 (533)
T 3f6t_A 402 STNGGSDDPYIDIARKLVSERYDQLHDAMQ-A-PKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLA 479 (533)
T ss_dssp CBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-C-CCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHhcC-C-CccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHH
Confidence 113567788888999999997 4 666555555666666653100000000 001235566677
Q ss_pred HhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567 428 KEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 428 ~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~ 480 (483)
++.||.+.++..+..+ +..+|+++. .++++++++++++|+++++++..
T Consensus 480 ~~~GV~v~pg~~f~~~----~~~iRls~a-~~~~e~i~~~i~~L~~~l~~~~~ 527 (533)
T 3f6t_A 480 EKNGVVLVDGVGFGAK----PGELRVSQA-NLPTEDYALIGKQVLELLKEYYE 527 (533)
T ss_dssp HHTTSSSCTTEEECSS----TTEEEEESS-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCEEEeCCcccCCC----CCEEEEEEe-eCCHHHHHHHHHHHHHHHHHHHH
Confidence 7789999877654331 245999984 47899999999999999988654
No 186
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.92 E-value=2.1e-23 Score=210.58 Aligned_cols=282 Identities=13% Similarity=0.139 Sum_probs=202.5
Q ss_pred hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhH----hhhcCCeEEEecCCCHHHH
Q 011567 153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHNDMDSL 228 (483)
Q Consensus 153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g----~~~s~~~v~~~~~~d~~~L 228 (483)
.+...+++++|++++|.++++++++|++|+..+++++.++||.|++..+.|.++... +...|.+++.++..|++++
T Consensus 58 ~~~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l 137 (389)
T 3acz_A 58 NPTVEQFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKV 137 (389)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTCHHHH
T ss_pred ChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCHHHH
Confidence 467889999999999999999999999999999999999999999988888877665 4667899999999898888
Q ss_pred HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCcee
Q 011567 229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKID 308 (483)
Q Consensus 229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~D 308 (483)
++.+++ ++++|+++++++++|.+.|+++|+++|++||+++|+||+|+.+..+. . ++. .+|
T Consensus 138 ~~~i~~----------~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~---~----~~~---~~d 197 (389)
T 3acz_A 138 KAAWKP----------NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLK---P----LEL---GAD 197 (389)
T ss_dssp HHTCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCC---G----GGT---TCS
T ss_pred HHhcCC----------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccC---c----ccc---CCe
Confidence 877643 26899999999999999999999999999999999999998764321 1 222 348
Q ss_pred EEEccccccccCC----CceeeccH-HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Q 011567 309 IVTAAMGHALATE----GGFCTGSA-RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG 383 (483)
Q Consensus 309 i~~~s~~K~lg~~----GG~i~~~~-~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~ 383 (483)
+++.|++|++++. ||++++++ ++++.++.... .++..++|..+.++.++++.+ +...++..++.+.+.+.
T Consensus 198 i~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~--~~g~~~~~~~~~~~~~~l~~l---~~r~~~~~~~~~~l~~~ 272 (389)
T 3acz_A 198 IALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRK--DAGSLMAPMDAFLCARGMKTL---PIRMQIHMENGLKVAKF 272 (389)
T ss_dssp EEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHH--HHCCCCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHH
T ss_pred EEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHH--hcCCCCCHHHHHHHHcCccHH---HHHHHHHHHHHHHHHHH
Confidence 9999999999754 68998888 88887654321 134456788877777777644 23455666667766666
Q ss_pred hccCC--------------Cceeec---CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEee---------
Q 011567 384 LSDIH--------------GLSIAS---NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTS--------- 437 (483)
Q Consensus 384 L~~~~--------------~~~i~~---~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~--------- 437 (483)
|++.+ ++.+.. ...++++.+.++. . .+ ...++++.|+++...
T Consensus 273 l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~--------~---~~-~~~~l~~~~i~~~~~s~G~~~sl~ 340 (389)
T 3acz_A 273 LEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS--------F---EA-AKKLMEHLKVCTLAVSLGCVDTLI 340 (389)
T ss_dssp HHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS--------H---HH-HHHHHTTCSSSEEBSCCCCSSCEE
T ss_pred HHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC--------H---HH-HHHHHHhCCCcEECcCCCCcccEe
Confidence 65542 222211 1246788888742 1 12 334566678877652
Q ss_pred cccccc-c-----------CCCCCceEEEccCCCCHHHHHHHHHHH
Q 011567 438 KRSMLD-K-----------CRLPVGIRLFVSAAHSEADLVKACESL 471 (483)
Q Consensus 438 ~~~~~~-~-----------~~~~~~lRi~~~~~~t~edi~~~~~~l 471 (483)
..+... + ...+..||+++....+++.++.+.++|
T Consensus 341 ~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~l~~al 386 (389)
T 3acz_A 341 EHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQAL 386 (389)
T ss_dssp ECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred eCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHH
Confidence 111100 0 011245999998876666666555554
No 187
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.92 E-value=8.6e-24 Score=213.33 Aligned_cols=310 Identities=15% Similarity=0.207 Sum_probs=217.8
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCCCccc-ChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-ccCCcEEEEcCCc
Q 011567 125 HEKLLESCTSALEKYGVGSCGPRGFYG-TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGV 202 (483)
Q Consensus 125 ~p~i~~a~~~~l~~~g~g~~~~~~~~g-~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~~~ 202 (483)
.+++.+++.+.+... .|+ ..+...++++.+++++|.++++++++|++|+..+++++ .++||.|+++.+.
T Consensus 35 ~~~~~~a~~~~~~~~---------~~~~~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~ 105 (391)
T 3dr4_A 35 DGNERDYVLECMDTT---------WISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLT 105 (391)
T ss_dssp CSSHHHHHHHHHHHT---------CCSSCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCCTTCEEEEESSS
T ss_pred CHHHHHHHHHHHHcC---------CccCCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCc
Confidence 378888888888762 122 45778999999999999999999999999999999999 8999999999999
Q ss_pred hhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCc
Q 011567 203 HWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRF 276 (483)
Q Consensus 203 h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~ 276 (483)
|.++..++...|.+++.++.+ |+++|++.+++ ++++|+++ +++|.+.|+++|+++|++||+
T Consensus 106 ~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~----------~~~~v~~~---n~tG~~~~~~~i~~l~~~~~~ 172 (391)
T 3dr4_A 106 YIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITP----------RTKAIMPV---HLYGQICDMDPILEVARRHNL 172 (391)
T ss_dssp CTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCT----------TEEEECCB---CGGGCCCCHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcCC----------CceEEEEE---CCCCChhhHHHHHHHHHHcCC
Confidence 999999999999999888765 67777665532 25666643 467999999999999999999
Q ss_pred EEEEeCccccccccCCCCccccccCCCCCceeEEEcccc--cccc-CCCceeecc-HHHHHHHHhc---CCc----ee--
Q 011567 277 RVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMG--HALA-TEGGFCTGS-ARVVDHQRLS---SSG----YV-- 343 (483)
Q Consensus 277 ~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~--K~lg-~~GG~i~~~-~~~~~~~~~~---~~~----~~-- 343 (483)
++|+||+|+.|.... +. ..+..+ |+.+.|++ |+++ +.||+++.+ +++.+.++.. +.. +.
T Consensus 173 ~li~D~a~~~g~~~~-~~----~~~~~~---di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 244 (391)
T 3dr4_A 173 LVIEDAAEAVGATYR-GK----KSGSLG---DCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFP 244 (391)
T ss_dssp EEEEECTTCTTCEET-TE----ETTSSS---SEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCS
T ss_pred EEEEECcccccceEC-Ce----eecccC---CEEEEECCCCCcCCcCCeEEEEECCHHHHHHHHHHHhcCCCCCCccccc
Confidence 999999999765421 11 122212 56555654 9996 456777654 5566554321 111 11
Q ss_pred ---ecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecC--C-----CCCEEEEEecCCCCCch
Q 011567 344 ---FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASN--P-----ESPIVFLILEKSTGSMK 413 (483)
Q Consensus 344 ---fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~--~-----~~~i~~l~l~~~~~~~~ 413 (483)
+...++++.++++...++.+ ++..++.+++.+++++.|.++ ++.+... . ...++.+.+.+..+.
T Consensus 245 ~~g~~~~~~~l~aa~~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 318 (391)
T 3dr4_A 245 IVGFNYRMTNIQAAIGLAQLERV---DEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHVFWMYTVRLGEGLST-- 318 (391)
T ss_dssp SCCCBCBCCHHHHHHHHHHHHTH---HHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCCCSSEEEEECSSCSS--
T ss_pred ccccccCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcceeEEEEEEECCccch--
Confidence 12346777777766665544 347788889999999999987 7776543 1 123456666432110
Q ss_pred hhHHHHHHHHHHHHHhCCEEEEeecccc-----ccc---CCC-------CCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567 414 NDLQLLEDIADWALKEDGVFVVTSKRSM-----LDK---CRL-------PVGIRLFVSAAHSEADLVKACESLKRIS 475 (483)
Q Consensus 414 ~~~~~~~~i~~~~l~~~Gv~v~~~~~~~-----~~~---~~~-------~~~lRi~~~~~~t~edi~~~~~~l~~~~ 475 (483)
+ ..++.+.+ .++||.+++...+. ... ... ...||++++..+|++||++++++|++++
T Consensus 319 -~---~~~l~~~L-~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 319 -T---RDQVIKDL-DALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp -C---HHHHHHHH-HHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred -h---HHHHHHHH-HHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 1 23566654 45699998664221 000 000 1239999999999999999999998753
No 188
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.92 E-value=6.5e-24 Score=215.62 Aligned_cols=290 Identities=13% Similarity=0.125 Sum_probs=207.6
Q ss_pred hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEecCCCHHHH
Q 011567 153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYFKHNDMDSL 228 (483)
Q Consensus 153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~~~~d~~~L 228 (483)
.+...++|++||+++|.++++++++|++|+..++.++.++||.|+++...|.++...+ ...|.++..++.+|+++|
T Consensus 81 ~p~~~~le~~lA~l~g~~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~l 160 (415)
T 2fq6_A 81 TLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADI 160 (415)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGG
T ss_pred CchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCCCHHHH
Confidence 4678999999999999999999999999999999999999999999888888776443 456889999998999998
Q ss_pred HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHH--cCcEEEEeCccccccccCCCCccccccCCCCCc
Q 011567 229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK--YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDK 306 (483)
Q Consensus 229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k--~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~ 306 (483)
++.++. ++++|+++.++|++|.+.|+++|.++|++ ||+++|+|++|+.+... ..+ . ..
T Consensus 161 e~ai~~----------~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~---~p~----~---~g 220 (415)
T 2fq6_A 161 VKHLQP----------NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLF---KAL----D---FG 220 (415)
T ss_dssp GGGCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSS---CGG----G---GT
T ss_pred HHhhcc----------CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccC---Ccc----c---cC
Confidence 877643 27899999999999999999999999999 99999999999865322 111 1 23
Q ss_pred eeEEEccccccccCC----CceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q 011567 307 IDIVTAAMGHALATE----GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRT 382 (483)
Q Consensus 307 ~Di~~~s~~K~lg~~----GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~ 382 (483)
+|++++|++|.+|+. ||++++++++++.++... ..+++.++|..+..+..+++.+. ...++..++...+.+
T Consensus 221 ~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~--~~~G~~~~~~~a~~~~~~l~~l~---~r~~~~~~n~~~l~~ 295 (415)
T 2fq6_A 221 IDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA--YLMGQMVDADTAYITSRGLRTLG---VRLRQHHESSLKVAE 295 (415)
T ss_dssp CSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH--HHTTCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred CeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHH--HhcCCCCCHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHH
Confidence 489999999999854 588888888777665432 12344567877776666666553 356777788888888
Q ss_pred hhccCCCce-e-ec---------------CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccc----
Q 011567 383 GLSDIHGLS-I-AS---------------NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSM---- 441 (483)
Q Consensus 383 ~L~~~~~~~-i-~~---------------~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~---- 441 (483)
.|++.+.+. + .+ ...++++.+.++... +......+.+. ++-.++.++.+...+
T Consensus 296 ~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~-----~~~~~~~~l~~-l~~~~~a~s~G~~~s~~~~ 369 (415)
T 2fq6_A 296 WLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKL-----NNEELANYLDN-FSLFSMAYSWGGYESLILA 369 (415)
T ss_dssp HHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCC-----CHHHHHHHHTT-CSSCEECSCCCSSSCEEEE
T ss_pred HHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCC-----CHHHHHHHHHh-CCcCeEeccCCCCceeEEe
Confidence 887754332 1 10 124778999985310 01223344442 222233333221100
Q ss_pred --------cc----cCCCCCceEEEccCCCCHHHHHHHHHHHHH
Q 011567 442 --------LD----KCRLPVGIRLFVSAAHSEADLVKACESLKR 473 (483)
Q Consensus 442 --------~~----~~~~~~~lRi~~~~~~t~edi~~~~~~l~~ 473 (483)
+. ....+..||+++....++++|+.+.++|++
T Consensus 370 ~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 370 NQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp ECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred cCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 00 011124599999999999999999888874
No 189
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.92 E-value=1.4e-23 Score=210.08 Aligned_cols=303 Identities=18% Similarity=0.206 Sum_probs=214.5
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-ccCCcEEEEcCCchh
Q 011567 126 EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVHW 204 (483)
Q Consensus 126 p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~~~h~ 204 (483)
|++.+++.+.+... .|+..+...++++++++++|.++++++++|++|+..+++++ .++||.|+++...|.
T Consensus 16 ~~v~~a~~~~~~~~---------~~~~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~ 86 (367)
T 3nyt_A 16 DKIDAGIQRVLRHG---------QYILGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYV 86 (367)
T ss_dssp HHHHHHHHHHHHHC---------CCSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCT
T ss_pred HHHHHHHHHHHhcC---------CccCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccH
Confidence 45556666666542 23345678999999999999999999999999999999998 899999999999999
Q ss_pred HHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEE
Q 011567 205 GIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRV 278 (483)
Q Consensus 205 s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~l 278 (483)
++..++...|.+++.++.+ |+++|++.+++ ++++|+.+ +++|...|+++|.++|++||+++
T Consensus 87 ~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~----------~~~~v~~~---~~~G~~~~~~~i~~la~~~~~~l 153 (367)
T 3nyt_A 87 ATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITP----------RTKAIIPV---SLYGQCADFDAINAIASKYGIPV 153 (367)
T ss_dssp HHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCCT----------TEEEECCB---CGGGCCCCHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhcCc----------CCcEEEee---CCccChhhHHHHHHHHHHcCCEE
Confidence 9999999999999888754 67777776632 26677743 45689999999999999999999
Q ss_pred EEeCccccccccCCCCccccccCCCCCceeEEEccc--cccccCC--Cceeec-cHHHHHHHHhcC-Cce---------e
Q 011567 279 FLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAM--GHALATE--GGFCTG-SARVVDHQRLSS-SGY---------V 343 (483)
Q Consensus 279 i~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~--~K~lg~~--GG~i~~-~~~~~~~~~~~~-~~~---------~ 343 (483)
|+||+|++|... .|+. .+... |+++.|| +|++|+. ||++++ ++++.+.++... .+. .
T Consensus 154 i~D~a~~~g~~~-~~~~----~~~~~---di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g 225 (367)
T 3nyt_A 154 IEDAAQSFGASY-KGKR----SCNLS---TVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQDRRYHHIRVG 225 (367)
T ss_dssp EEECTTTTTCEE-TTEE----TTSSS---SEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETTEECSCC
T ss_pred EEECccccCCeE-CCee----ccCCC---CEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCCcCceeeccC
Confidence 999999976542 1221 22211 7888887 8999863 688776 567776654321 111 1
Q ss_pred ecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCC-----CCEEEEEecCCCCCchhhHHH
Q 011567 344 FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPE-----SPIVFLILEKSTGSMKNDLQL 418 (483)
Q Consensus 344 fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~-----~~i~~l~l~~~~~~~~~~~~~ 418 (483)
++..++++.++++.+.++.++ +..++.+++.+++++.|+++ ++.+...+. ..++.+.+. +
T Consensus 226 ~~~~~~~~~aa~~~~~l~~~~---~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~--- 290 (367)
T 3nyt_A 226 VNSRLDTLQAAILLPKLEIFE---EEIALRQKVAAEYDLSLKQV-GIGTPFIEVNNISVYAQYTVRMD--------N--- 290 (367)
T ss_dssp CBCCCCHHHHHHHHHHHHTHH---HHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTEECCCSSEEEECS--------S---
T ss_pred cCCCccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccC-CeeccCCCCCCceeeEEEEEEeC--------C---
Confidence 344578999988888887663 46777888889999999886 444332211 123444442 1
Q ss_pred HHHHHHHHHHhCCEEEEeecccccc---cC-----CCC-------CceEEEccCCCCHHHHHHHHHHHHHH
Q 011567 419 LEDIADWALKEDGVFVVTSKRSMLD---KC-----RLP-------VGIRLFVSAAHSEADLVKACESLKRI 474 (483)
Q Consensus 419 ~~~i~~~~l~~~Gv~v~~~~~~~~~---~~-----~~~-------~~lRi~~~~~~t~edi~~~~~~l~~~ 474 (483)
..++.+. |+++||.++......+. .. ..| ..||++++..+|++|+++++++|++.
T Consensus 291 ~~~l~~~-L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 291 RESVQAS-LKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp HHHHHHH-HHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred HHHHHHH-HHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 2245555 44559988765321110 00 011 13999999999999999999999764
No 190
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.92 E-value=3e-23 Score=210.85 Aligned_cols=290 Identities=13% Similarity=0.118 Sum_probs=204.9
Q ss_pred hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHhh----hcCCeEEEecCCCHHHH
Q 011567 153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY----LSRSTVVYFKHNDMDSL 228 (483)
Q Consensus 153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~----~s~~~v~~~~~~d~~~L 228 (483)
.+...+|+++++++.|.++++++++|++|+..+++++.++||.|++..+.|.++...+. ..|.+++.++.+|+++|
T Consensus 80 ~p~~~~l~~~la~~~g~~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l 159 (414)
T 3ndn_A 80 NPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQW 159 (414)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHH
T ss_pred ChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCCHHHH
Confidence 46789999999999999999999999999999999999999999999888888766554 37899999999999999
Q ss_pred HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCcee
Q 011567 229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKID 308 (483)
Q Consensus 229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~D 308 (483)
++.++. ++++|++|++++++|.+.|+++|+++|++||+++|+||+|+.|.+.. .+ .+ .+|
T Consensus 160 ~~ai~~----------~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~---~~--~~-----g~d 219 (414)
T 3ndn_A 160 ERALSV----------PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQ---GF--PL-----GVD 219 (414)
T ss_dssp HHHTSS----------CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCC---CG--GG-----TCS
T ss_pred HHhcCC----------CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCC---ch--hc-----CCC
Confidence 887743 26788999999999999999999999999999999999998654321 11 22 248
Q ss_pred EEEccccccccCC----CceeeccHHHHH-HHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Q 011567 309 IVTAAMGHALATE----GGFCTGSARVVD-HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG 383 (483)
Q Consensus 309 i~~~s~~K~lg~~----GG~i~~~~~~~~-~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~ 383 (483)
+++.|++|++|+. ||+++++++.+. .++... ..++..++|..++++...++.+ ....++..++++.+.+.
T Consensus 220 iv~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~--~~~g~~~~~~~a~~~~~~l~~l---~~r~~~~~~~a~~l~~~ 294 (414)
T 3ndn_A 220 VVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLM--RHTGPAMSAFNAWVLLKGLETL---AIRVQHSNASAQRIAEF 294 (414)
T ss_dssp EEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHH--HHHCCCCCHHHHHHHHHHGGGH---HHHHHHHHHHHHHHHHH
T ss_pred eEeccCCccccCCCCceEEEEEECHHHHHHHHHHHH--HHcCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 9999999999753 589988887665 443221 1223456788777766666544 34677788888999999
Q ss_pred hccCCCceeecC-----------------CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccccc----
Q 011567 384 LSDIHGLSIASN-----------------PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSML---- 442 (483)
Q Consensus 384 L~~~~~~~i~~~-----------------~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~---- 442 (483)
|++.+++..... ..+.++.+.++... ........++.+. ++..++.+..+...++
T Consensus 295 L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~---~~~~~~~~~~~~~-l~~~~~~~s~G~~~sl~~~p 370 (414)
T 3ndn_A 295 LNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPE---DVAKQRAFEVLDK-MRLIDISNNLGDAKSLVTHP 370 (414)
T ss_dssp HHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCG---GGHHHHHHHHHHH-CSSSEECSCCSCSSCEEECG
T ss_pred HhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCc---cccHHHHHHHHHh-CccceEcCCCCCCCceeeCc
Confidence 987766532211 14678999985310 0002334456654 3334554443332211
Q ss_pred ---c-----------cCCCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567 443 ---D-----------KCRLPVGIRLFVSAAHSEADLVKACESLKRIS 475 (483)
Q Consensus 443 ---~-----------~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~ 475 (483)
. ....+..||+++.. |+++.+++.|++++
T Consensus 371 ~~~~~~~~~~~~~~~~g~~~~~iRlsvG~----e~~~dli~dl~~al 413 (414)
T 3ndn_A 371 ATTTHRAMGPEGRAAIGLGDGVVRISVGL----EDTDDLIADIDRAL 413 (414)
T ss_dssp GGTTTCTTHHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 0 01113349999976 55555555565554
No 191
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.92 E-value=4.8e-23 Score=207.86 Aligned_cols=308 Identities=16% Similarity=0.157 Sum_probs=217.8
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-------ccCCcEE
Q 011567 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-------CKKGDLI 196 (483)
Q Consensus 124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-------~~~gdiI 196 (483)
-+|++.+++.+++++. .++..+...++++.+++++|.++++++++|++|+..+++++ .++||.|
T Consensus 13 ~~~~~~~a~~~~~~~~---------~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~V 83 (390)
T 3b8x_A 13 WDDLEYKAIQSVLDSK---------MFTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEI 83 (390)
T ss_dssp CCHHHHHHHHHHHHHT---------CCSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEE
T ss_pred CCHHHHHHHHHHHHcC---------CCCCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEE
Confidence 3688999999998862 23345778999999999999999999999999999999988 7889999
Q ss_pred EEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHH
Q 011567 197 VADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRL 270 (483)
Q Consensus 197 ~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l 270 (483)
+++...|.++..++...|.+++.++.+ |+++|++.+++ ++++|++.+ +.|...|+++|.++
T Consensus 84 i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~----------~~~~v~~~~---~~g~~~~~~~i~~l 150 (390)
T 3b8x_A 84 IVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTD----------STKAILTVN---LLGNPNNFDEINKI 150 (390)
T ss_dssp EEESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT----------TEEEEEEEC---GGGCCCCHHHHHHH
T ss_pred EECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCc----------CCeEEEEEC---CccChhhHHHHHHH
Confidence 999999999999999999999888765 67777776642 245655543 34778899999999
Q ss_pred HHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccc--ccccc-CCCceeeccH-HHHHHHHh---cC----
Q 011567 271 KEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAM--GHALA-TEGGFCTGSA-RVVDHQRL---SS---- 339 (483)
Q Consensus 271 ~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~--~K~lg-~~GG~i~~~~-~~~~~~~~---~~---- 339 (483)
|++||+++|+||+|+.|... .+ ..+|..+ |+.+.|+ +|.++ +.||++++++ ++.+.++. .+
T Consensus 151 ~~~~~~~li~D~a~~~g~~~-~~----~~~g~~~---~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~ 222 (390)
T 3b8x_A 151 IGGRDIILLEDNCESMGATF-NN----KCAGTFG---LMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHGWTRN 222 (390)
T ss_dssp HTTSCCEEEEECTTCTTCEE-TT----EETTSSS---SEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTBSTT
T ss_pred HHHcCCEEEEECcCcccCEE-CC----ccccccc---ceEEEEccCCCCCccCCceEEEeCCHHHHHHHHHHHhcCCCcc
Confidence 99999999999999977543 22 2345433 5554343 56664 4578988775 56554332 11
Q ss_pred -----------------Ccee-----ecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCC-
Q 011567 340 -----------------SGYV-----FSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP- 396 (483)
Q Consensus 340 -----------------~~~~-----fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~- 396 (483)
..+. +...++++.++++++.++.++ +..++.+++.+++.+.|++++++.+...+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 299 (390)
T 3b8x_A 223 LPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP---RFISVRRKNAEYFLDKFKDHPYLDVQQETG 299 (390)
T ss_dssp SCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTCSSEEECCCCS
T ss_pred ccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCCcccCCCCC
Confidence 0111 222368888888888887664 47888899999999999988788775432
Q ss_pred CCC--EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccc---c-ccC---------CCC-------CceEEE
Q 011567 397 ESP--IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSM---L-DKC---------RLP-------VGIRLF 454 (483)
Q Consensus 397 ~~~--i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~---~-~~~---------~~~-------~~lRi~ 454 (483)
.++ .+.+.+....+. + ..++.+. |.++||.++....+. . +.. ..| ..||++
T Consensus 300 ~~~~~~~~i~~~~~~~~---~---~~~l~~~-L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 372 (390)
T 3b8x_A 300 ESSWFGFSFIIKKDSGV---I---RKQLVEN-LNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVG 372 (390)
T ss_dssp BCCCCEEEEEECTTSCC---C---HHHHHHH-HHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEE
T ss_pred CcccEEEEEEecCcCcc---c---HHHHHHH-HHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEee
Confidence 233 355555421110 1 2245665 455799988632211 1 100 011 139999
Q ss_pred ccCCCCHHHHHHHHHHH
Q 011567 455 VSAAHSEADLVKACESL 471 (483)
Q Consensus 455 ~~~~~t~edi~~~~~~l 471 (483)
++..+|++|+++++++|
T Consensus 373 ~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 373 NHQIELFDEIDYLREVL 389 (390)
T ss_dssp CCSSCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhh
Confidence 99999999999999876
No 192
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.92 E-value=9.2e-24 Score=213.43 Aligned_cols=286 Identities=10% Similarity=0.064 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCCCHHHHH
Q 011567 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSLR 229 (483)
Q Consensus 154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~Le 229 (483)
+...+++++||+++|.++.+++++|++|+..+++ +.++||.|++....|.++.. .++..|.+++.++.+| ++|+
T Consensus 55 ~~~~~lr~~la~~~g~~~~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d-~~l~ 132 (393)
T 1n8p_A 55 PNRENLERAVAALENAQYGLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLL-NDLP 132 (393)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHH-HHHH
T ss_pred hhHHHHHHHHHHHhCCCcEEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCCh-HHHH
Confidence 5678999999999999899999999999999999 88999988888888876554 3456688888888877 7777
Q ss_pred HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHc----CcEEEEeCccccccccCCCCccccccCCCCC
Q 011567 230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKY----RFRVFLDESNSFGVLGRSGRGLTEHCGVPVD 305 (483)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~----~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~ 305 (483)
+.++. ++++|+++++++++|.+.|+++|.++|++| |+++|+||+|+.+.+. . ..+ +
T Consensus 133 ~~i~~----------~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~---~-~~~-~----- 192 (393)
T 1n8p_A 133 QLIKE----------NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS---N-PLN-F----- 192 (393)
T ss_dssp HHSCS----------SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC---C-GGG-G-----
T ss_pred Hhccc----------CceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC---C-HHH-c-----
Confidence 66532 378999999999999999999999999999 9999999999877543 1 111 2
Q ss_pred ceeEEEccccccccCCC----ceeecc-HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011567 306 KIDIVTAAMGHALATEG----GFCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAIL 380 (483)
Q Consensus 306 ~~Di~~~s~~K~lg~~G----G~i~~~-~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l 380 (483)
++|+++.|++|.+|+.| |+++++ +++++.++..... ++..++|..++++..+++.+ +...++..++.+.+
T Consensus 193 ~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~--~g~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~l 267 (393)
T 1n8p_A 193 GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA--IGAIPSPFDAWLTHRGLKTL---HLRVRQAALSANKI 267 (393)
T ss_dssp TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHH
T ss_pred CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHhccchH---HHHHHHHHHHHHHH
Confidence 24899999999999654 998874 7888776543211 33445677777666666544 34567777788888
Q ss_pred HHhhccCCC-ce-e-ec---------------CC-C-CCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeeccc
Q 011567 381 RTGLSDIHG-LS-I-AS---------------NP-E-SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRS 440 (483)
Q Consensus 381 ~~~L~~~~~-~~-i-~~---------------~~-~-~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~ 440 (483)
.+.|.+.+. +. + .+ .. . ++++.+.++.. ......+.+. ++..++.++.+...
T Consensus 268 ~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-------~~~~~~~l~~-l~~~~~~~s~G~~~ 339 (393)
T 1n8p_A 268 AEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGG-------AEAASKFASS-TRLFTLAESLGGIE 339 (393)
T ss_dssp HHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSC-------HHHHHHHHHH-CSSSEECSCCCCSS
T ss_pred HHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCc-------HHHHHHHHhh-CCcceECCCCCCCc
Confidence 888876543 22 1 10 01 3 67889888521 1223344443 33234443322111
Q ss_pred c-------ccc-----------CCCCCceEEEccCCCCHHHHHHHHHHHHHH
Q 011567 441 M-------LDK-----------CRLPVGIRLFVSAAHSEADLVKACESLKRI 474 (483)
Q Consensus 441 ~-------~~~-----------~~~~~~lRi~~~~~~t~edi~~~~~~l~~~ 474 (483)
+ ..+ ...+..||+++....++++++.+.++|+++
T Consensus 340 s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 340 SLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp CEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred ceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 1 011 011245999999999999999999988765
No 193
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.92 E-value=2.9e-24 Score=217.47 Aligned_cols=322 Identities=11% Similarity=0.040 Sum_probs=207.7
Q ss_pred eEEEeecCCCCCCCCChH----HHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhC--------CCCEEE--e
Q 011567 110 EVVNFASANYLGLIGHEK----LLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG--------TPDSIL--Y 175 (483)
Q Consensus 110 ~~id~~s~~~lG~~~~p~----i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g--------~e~~i~--~ 175 (483)
.+|||+.+.|+.+..+|. +.+++.+.+...+. .+.....| ..++++.++++++ .++.++ +
T Consensus 29 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~--~~Y~~~~g----~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t 102 (401)
T 7aat_A 29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMD--KEYLPIAG----LADFTRASAELALGENSEAFKSGRYVTVQG 102 (401)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCC--CCCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CceeeeeeeEECCCCCEechHHHHHHHHHhcccccc--cCCCCCCC----CHHHHHHHHHHhcCCCccccccCceEEEec
Confidence 379999998866655554 55655555543222 11111233 3456666666653 345554 6
Q ss_pred cccHHHHHhhhhhhc---cCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCc
Q 011567 176 SYGLSTMFSAIPCFC---KKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKL 245 (483)
Q Consensus 176 ~sG~~a~~~ai~~~~---~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~ 245 (483)
++|++++..++.++. ++||.|+++.++|..+...++..|.+++.++.+ |++++++.+++... +
T Consensus 103 ~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~-------~ 175 (401)
T 7aat_A 103 ISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPE-------K 175 (401)
T ss_dssp EHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCT-------T
T ss_pred CcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCC-------C
Confidence 888899998876654 899999999999999999999999998887753 56777777765322 3
Q ss_pred cEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCC--Cc-cccccCCCCCceeEEEcccccccc
Q 011567 246 RRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSG--RG-LTEHCGVPVDKIDIVTAAMGHALA 319 (483)
Q Consensus 246 ~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G--~g-~~~~~~v~~~~~Di~~~s~~K~lg 319 (483)
+++|++..++|++|.+.+ +++|+++|++||+++|+||+|..+.++... .. +....+. .+..++++|+||++|
T Consensus 176 ~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~sK~~~ 253 (401)
T 7aat_A 176 SIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQ--GIDVVLSQSYAKNMG 253 (401)
T ss_dssp CEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT--TCCCEEEEECTTTSC
T ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhc--CCcEEEEecCCcccc
Confidence 688899999999998877 789999999999999999999765443210 00 1111122 233688899999999
Q ss_pred CCC---ceeec---cHH----HHHHHHhcCCceeecCCCcHHHHHHHHHHHHH-------HhcCcHHHHHHHHHHHHHHH
Q 011567 320 TEG---GFCTG---SAR----VVDHQRLSSSGYVFSASLPPYLASAAITAIDV-------LEENPDLITKLKKNTAILRT 382 (483)
Q Consensus 320 ~~G---G~i~~---~~~----~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~-------l~~~~~~~~~l~~~~~~l~~ 382 (483)
..| ||++. +++ +.+.++.....+ ..+.+...++++...++. .+...+.+++++++.+++.+
T Consensus 254 ~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~ 331 (401)
T 7aat_A 254 LYGERAGAFTVICRDAEEAKRVESQLKILIRPM--YSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVS 331 (401)
T ss_dssp CGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCceEEEEEEeCCHHHHHHHHHHHHHHHHhc--cCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777 88654 555 334333221111 112233433333333321 12224567888899999999
Q ss_pred hhccCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCC
Q 011567 383 GLSDIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAH 459 (483)
Q Consensus 383 ~L~~~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~ 459 (483)
.|+++. ++.+..+..+.+.++.+. . +.+..+++++||.+. +++|++++. +
T Consensus 332 ~L~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~ll~~~gi~v~-------------~~~Ris~~~-~ 384 (401)
T 7aat_A 332 NLKKEGSSHNWQHITDQIGMFCFTGLK---------P----EQVERLTKEFSIYMT-------------KDGRISVAG-V 384 (401)
T ss_dssp HHHHTTCCSCCHHHHHCCSSEEECCCC---------H----HHHHHHHHHHCEECC-------------TTCEEEGGG-C
T ss_pred HHHhcCCCCCCceecCCcceEEecCCC---------H----HHHHHHHHhCCEecc-------------CCCeEEecc-C
Confidence 998761 254443434445444331 1 233456666799885 338999976 4
Q ss_pred CHHHHHHHHHHHHHHH
Q 011567 460 SEADLVKACESLKRIS 475 (483)
Q Consensus 460 t~edi~~~~~~l~~~~ 475 (483)
|+++|++++++|++++
T Consensus 385 ~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 385 ASSNVGYLAHAIHQVT 400 (401)
T ss_dssp CTTTHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHh
Confidence 5566999999999875
No 194
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.92 E-value=4.9e-23 Score=208.21 Aligned_cols=322 Identities=11% Similarity=0.164 Sum_probs=222.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhh-ccCCcEEEEcCCch
Q 011567 125 HEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCF-CKKGDLIVADEGVH 203 (483)
Q Consensus 125 ~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~~~h 203 (483)
.|++.+++.+.++. +. .. ...+...++++.+++++|.++++++++|++|+..+++++ .++||.|+++.+.|
T Consensus 11 ~~~v~~a~~~~~~~-~~--~~-----~~g~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~ 82 (394)
T 1o69_A 11 GGNELKYIEEVFKS-NY--IA-----PLGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTF 82 (394)
T ss_dssp -CCHHHHHHHHHHH-TT--TS-----CTTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSC
T ss_pred CHHHHHHHHHHHHc-CC--cc-----CCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCcc
Confidence 47888898888875 11 00 012568899999999999988888999999999999999 89999999999999
Q ss_pred hHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEE
Q 011567 204 WGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRV 278 (483)
Q Consensus 204 ~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~l 278 (483)
.++...+...|.+++.++.+ |+++|++.+++... ++++|++++ ++|...++++|.++|++||+++
T Consensus 83 ~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~-------~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~l 152 (394)
T 1o69_A 83 IASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKECEK-------KPKALILTH---LYGNAAKMDEIVEICKENDIVL 152 (394)
T ss_dssp GGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSS-------CCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccC-------CceEEEEEC---CCCChhhHHHHHHHHHHcCCEE
Confidence 99999999899998888753 78888888764211 245666665 4688999999999999999999
Q ss_pred EEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeecc-HHHHHHHHhcCCce-----ee-------
Q 011567 279 FLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGS-ARVVDHQRLSSSGY-----VF------- 344 (483)
Q Consensus 279 i~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~-~~~~~~~~~~~~~~-----~f------- 344 (483)
|+||+|+.|... .|..... + .++|+.+.|.+|+++ ..+||++++ +++++.++...... .|
T Consensus 153 i~Dea~~~g~~~-~~~~~~~-~----~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~ 226 (394)
T 1o69_A 153 IEDAAEALGSFY-KNKALGT-F----GEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGY 226 (394)
T ss_dssp EEECTTCTTCEE-TTEETTS-S----SSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCC
T ss_pred EEECcCccccee-CCccccc-c----cCcEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCc
Confidence 999999965432 2222111 1 246888777799997 446899885 78887765432111 01
Q ss_pred cCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCC-----CCCEEEEEecCCC------CC--
Q 011567 345 SASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNP-----ESPIVFLILEKST------GS-- 411 (483)
Q Consensus 345 s~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~-----~~~i~~l~l~~~~------~~-- 411 (483)
...++++.+++++..++.++ +.+++++++.+++.+.|.++ +.+.+.. ...++.+.++... +.
T Consensus 227 ~~~~~~~~aa~~l~~l~~l~---~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 301 (394)
T 1o69_A 227 NYRLSNVLGAIGVAQMEVLE---QRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNELNACQKDI 301 (394)
T ss_dssp BCBCCHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEE
T ss_pred ccCcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhccccccccc
Confidence 11257777777766665553 47788999999999999875 5544331 1125677764210 00
Q ss_pred ----c-hhhHHHHHHHHHHHHHhCCEEEEeeccc-----ccccC---CCC-------CceEEEccCCCCHHHHHHHHHHH
Q 011567 412 ----M-KNDLQLLEDIADWALKEDGVFVVTSKRS-----MLDKC---RLP-------VGIRLFVSAAHSEADLVKACESL 471 (483)
Q Consensus 412 ----~-~~~~~~~~~i~~~~l~~~Gv~v~~~~~~-----~~~~~---~~~-------~~lRi~~~~~~t~edi~~~~~~l 471 (483)
. ........++.+.+ .++||.+++...+ .+... ..| .++|+..+..+|++|+++++++|
T Consensus 302 ~~~~~~~~~~~~~~~l~~~L-~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l 380 (394)
T 1o69_A 302 NISQKNITLHPKISKLIEDL-KNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLI 380 (394)
T ss_dssp ECCCCCCCCCHHHHHHHHHH-HHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHH
T ss_pred cccccccccccCHHHHHHHH-HHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHH
Confidence 0 00001234566654 4569999876432 11110 001 24777778889999999999999
Q ss_pred HHHHH
Q 011567 472 KRISA 476 (483)
Q Consensus 472 ~~~~~ 476 (483)
++++.
T Consensus 381 ~~~~~ 385 (394)
T 1o69_A 381 LKSIK 385 (394)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 98764
No 195
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.92 E-value=5.6e-24 Score=213.63 Aligned_cols=326 Identities=14% Similarity=0.160 Sum_probs=211.3
Q ss_pred Ce-eEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCC---CCEEEecccHHHHH
Q 011567 108 GK-EVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGT---PDSILYSYGLSTMF 183 (483)
Q Consensus 108 G~-~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~---e~~i~~~sG~~a~~ 183 (483)
|+ +++|++.... ....++++.+++. .++ +....+.++++.+++++|. ++++++++|++|+.
T Consensus 26 g~~~v~~~~~~~~-~~~~~~~v~~a~~----~~~----------~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~ 90 (374)
T 2aeu_A 26 GRDALYDLSGLSG-GFLIDEKDKALLN----TYI----------GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAIL 90 (374)
T ss_dssp CGGGCEECSSCCC-CCCCCHHHHHHHT----STT----------HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred CccceeeecccCC-CCCCCHHHHHHHH----Hhc----------CchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHH
Confidence 55 5778776431 1123466666653 221 1234567888888899998 67788899999999
Q ss_pred hhhhhhccCCcEEEEcCCc---hhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEE-EEEecccCCCC
Q 011567 184 SAIPCFCKKGDLIVADEGV---HWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRY-IVVEAVYQNSG 259 (483)
Q Consensus 184 ~ai~~~~~~gdiI~~~~~~---h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~-iv~e~v~~~~G 259 (483)
.+++++ +||.|++..+. |.+....+...|.+++.+ .|+++|++. . . ++++ |+++++++++|
T Consensus 91 ~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v--~d~~~l~~~-~---~-------~~~~~v~~~~p~nptG 155 (374)
T 2aeu_A 91 ATILAL--KPKKVIHYLPELPGHPSIERSCKIVNAKYFES--DKVGEILNK-I---D-------KDTLVIITGSTMDLKV 155 (374)
T ss_dssp HHHHHH--CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE--SCHHHHHTT-C---C-------TTEEEEEECBCTTSCB
T ss_pred HHHHhC--CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe--CCHHHHHhc-C---C-------CccEEEEEccCCCCCC
Confidence 999988 89988888774 344445677788888887 688887665 1 1 2677 88899999999
Q ss_pred -CccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeeccHHHHHHHHh
Q 011567 260 -QIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSARVVDHQRL 337 (483)
Q Consensus 260 -~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~~~~~~~~~~~ 337 (483)
...++++|.++|++||+++|+||+|+.+..+...... .... .+|++++|++|+++ ..+||+++++++++.++.
T Consensus 156 ~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~--~~~~---~~di~~~S~sK~l~g~~~G~~~~~~~~~~~l~~ 230 (374)
T 2aeu_A 156 IELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPP--ALKL---GADLVVTSTDKLMEGPRGGLLAGKKELVDKIYI 230 (374)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCC--HHHH---TCSEEEEETTSSSSSCSCEEEEEEHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHcCCEEEEECCcccccccccccCC--cccc---CCcEEEecCcccccCcceEEEEECHHHHHHHHH
Confidence 8888999999999999999999999765321111100 1111 23899999999996 567999999999888765
Q ss_pred cCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH--------HHHHHhhccC---CCceeecCCCCCEEEEEec
Q 011567 338 SSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNT--------AILRTGLSDI---HGLSIASNPESPIVFLILE 406 (483)
Q Consensus 338 ~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~--------~~l~~~L~~~---~~~~i~~~~~~~i~~l~l~ 406 (483)
.. ..++.+.++..++++.++++.+.. +..++..++. +.+.+.|..+ .|+.+...+.+.++ ....
T Consensus 231 ~~--~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~-~~~~ 305 (374)
T 2aeu_A 231 EG--TKFGLEAQPPLLAGIYRALKNFNL--ERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVI-KRVY 305 (374)
T ss_dssp HH--HTTTCBCCHHHHHHHHHHHHHCCH--HHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEE-EEEE
T ss_pred hh--ccccCCCCHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEE-Eeec
Confidence 32 123345688888888888886532 2334444444 4444445443 24454333333333 3321
Q ss_pred CCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccC-CCCHHHHHHHHHHHHHHHHHHHh
Q 011567 407 KSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSA-AHSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 407 ~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~-~~t~edi~~~~~~l~~~~~~~~~ 480 (483)
.. ...+.....+++.++++++||.+.++.... . .+..+||+++. ..++++++++.++++++++++.+
T Consensus 306 ~~---~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~--~--~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 373 (374)
T 2aeu_A 306 KD---DTINIKKLIEIGFNLLKNYGIITITVAGMP--G--ASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAFK 373 (374)
T ss_dssp SS---HHHHHHHHHHHHHHHHHHHCEECSTTSSSC--S--SCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHTC
T ss_pred cc---ccccccchHHHHHHHHHhCCEEEecCCCCC--C--CCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 10 000111122356566766799998753211 0 12349999864 33444689999999999888753
No 196
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.92 E-value=5.1e-24 Score=219.11 Aligned_cols=330 Identities=11% Similarity=0.065 Sum_probs=219.3
Q ss_pred CCee-EEEeecCCCCCCCCChHHHHHHHHHHHhcC----CCCCCCCCcccChHHHHHHHHHHHhhh-CCC-------CEE
Q 011567 107 SGKE-VVNFASANYLGLIGHEKLLESCTSALEKYG----VGSCGPRGFYGTIDVHLDCEARIAKFL-GTP-------DSI 173 (483)
Q Consensus 107 ~G~~-~id~~s~~~lG~~~~p~i~~a~~~~l~~~g----~g~~~~~~~~g~~~~~~~l~~~La~~~-g~e-------~~i 173 (483)
++++ .|||+.+.|+.+.+++.+.+++.+++++.. .+..+ |....-..++++.+++++ |.+ +.+
T Consensus 46 ~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~----Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~ 121 (448)
T 3meb_A 46 DTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKE----YPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIA 121 (448)
T ss_dssp CCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCS----CCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEE
T ss_pred CCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCC----CCCCcchHHHHHHHHHHhcCCCccccCcCcEE
Confidence 4443 699999999887677777777777743321 11111 222222467788888876 653 566
Q ss_pred E--ecccHHHHHh--hhhhhccCCcEEEEcCCchhHHHhHhh----hcCCeEEEecC---C-----CHHHHHHHHHHhhh
Q 011567 174 L--YSYGLSTMFS--AIPCFCKKGDLIVADEGVHWGIQNGLY----LSRSTVVYFKH---N-----DMDSLRNTLERVTA 237 (483)
Q Consensus 174 ~--~~sG~~a~~~--ai~~~~~~gdiI~~~~~~h~s~~~g~~----~s~~~v~~~~~---~-----d~~~Le~~l~~~~~ 237 (483)
+ +++|++|+.. .+.++..+||.|+++.+.|..+...+. ..|.+++.+++ + |+++|++.+++...
T Consensus 122 ~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~ 201 (448)
T 3meb_A 122 SCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPE 201 (448)
T ss_dssp EEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCT
T ss_pred EEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCC
Confidence 6 7888899876 456677899999999999999998888 88988888776 2 67777777764322
Q ss_pred hhhhccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCC--Ccccccc-CCCCCceeEEE
Q 011567 238 DNKRAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSG--RGLTEHC-GVPVDKIDIVT 311 (483)
Q Consensus 238 ~~~~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G--~g~~~~~-~v~~~~~Di~~ 311 (483)
.++++++...+|++|.+.+ +++|+++|++||+++|+||+|+.+..+... ......+ +. ....+++
T Consensus 202 -------~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~--~~~~i~~ 272 (448)
T 3meb_A 202 -------KSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDA--GVEVLVA 272 (448)
T ss_dssp -------TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHT--TCCEEEE
T ss_pred -------CcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhc--CCcEEEE
Confidence 3678888888999999988 667999999999999999999865443200 0111111 11 1225778
Q ss_pred ccccccccCCC---cee--ec---------cH----HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH-------hcC
Q 011567 312 AAMGHALATEG---GFC--TG---------SA----RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL-------EEN 366 (483)
Q Consensus 312 ~s~~K~lg~~G---G~i--~~---------~~----~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l-------~~~ 366 (483)
+|+||++|..| ||+ ++ ++ ++++.++.... ..++ +.|...+.++.++++.. +..
T Consensus 273 ~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~-~~~~~~~~a~~~~l~~~~l~~~~~~~~ 350 (448)
T 3meb_A 273 QSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIR-KTWS-MSAIHGAYIVQVIVHDKRLLQMFYDNV 350 (448)
T ss_dssp EECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHH-TTTS-SCCHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred ecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHh-cccC-CccHHHHHHHHHHhcChHHHHHHHHHH
Confidence 99999999777 886 44 45 55555443211 1111 23455555555554321 122
Q ss_pred cHHHHHHHHHHHHHHHhhccC--CC------ceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeec
Q 011567 367 PDLITKLKKNTAILRTGLSDI--HG------LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSK 438 (483)
Q Consensus 367 ~~~~~~l~~~~~~l~~~L~~~--~~------~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~ 438 (483)
.+++++++++++++.+.|+++ ++ +....+..+.+.++.+. .+++..++++.||++.++
T Consensus 351 ~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------------~~~~~~ll~~~gV~v~~G- 416 (448)
T 3meb_A 351 KEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT-------------PEHVDYLKEKWSIYLVKA- 416 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC-------------HHHHHHHHHHHCEEECSG-
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC-------------HHHHHHHHHhCCEEEeCC-
Confidence 457788888999999999876 34 44333334444444331 134555666779999753
Q ss_pred ccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 439 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 439 ~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
+.||++. .+|+++|++++++|++++++
T Consensus 417 -----------~gRis~a-~~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 417 -----------GGRMSMC-GLTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp -----------GGEEEGG-GCCTTTHHHHHHHHHHHHHH
T ss_pred -----------CcEEEEe-cCCHHHHHHHHHHHHHHHHh
Confidence 2499985 45778899999999999874
No 197
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.92 E-value=1.6e-23 Score=214.23 Aligned_cols=339 Identities=14% Similarity=0.118 Sum_probs=222.2
Q ss_pred CCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcc--cChHHHHHHHHHHHhhhCCC--CEEEecccHHHH
Q 011567 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFY--GTIDVHLDCEARIAKFLGTP--DSILYSYGLSTM 182 (483)
Q Consensus 107 ~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~--g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~ 182 (483)
+|..|+|++++. . .+|.+.+++.+++... .+...+...+ +..+...+++++|++++|.+ +.++.++|++++
T Consensus 17 ~~~~~Ld~~~~~---~-~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~ 91 (432)
T 3a9z_A 17 NRKVYMDYNATT---P-LEPEVIQAVTEAMKEA-WGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESN 91 (432)
T ss_dssp -CCEECBTTTCC---C-CCHHHHHHHHHHHHHC-CSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHH
T ss_pred CCcEEeeCCccC---C-CCHHHHHHHHHHHHHh-cCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHH
Confidence 456778877654 3 6799999999998762 1111111111 22346689999999999974 455567778999
Q ss_pred Hhhhhhhc--------cCCc-------------EEEEcCCchhHHHhHhh----hcCCeEEEecCC------CHHHHHHH
Q 011567 183 FSAIPCFC--------KKGD-------------LIVADEGVHWGIQNGLY----LSRSTVVYFKHN------DMDSLRNT 231 (483)
Q Consensus 183 ~~ai~~~~--------~~gd-------------iI~~~~~~h~s~~~g~~----~s~~~v~~~~~~------d~~~Le~~ 231 (483)
..++.++. ++|| .|+++...|.++..++. ..|.+++.++.+ |+++|++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~ 171 (432)
T 3a9z_A 92 NLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAA 171 (432)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHT
T ss_pred HHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHh
Confidence 99988875 4674 66677777777765543 357888887753 56666655
Q ss_pred HHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcC----------cEEEEeCccccccccCCCCccccccC
Q 011567 232 LERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYR----------FRVFLDESNSFGVLGRSGRGLTEHCG 301 (483)
Q Consensus 232 l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~----------~~li~DEa~s~g~lg~~G~g~~~~~~ 301 (483)
+++ ++++|+++++++++|.+.|+++|.++|++|+ +++|+||+|+.|... ..+ ..
T Consensus 172 i~~----------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~---~~~---~~ 235 (432)
T 3a9z_A 172 VRP----------TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRR---VDV---ED 235 (432)
T ss_dssp CCT----------TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSC---CCH---HH
T ss_pred ccC----------CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcc---cCh---hh
Confidence 432 2688999999999999999999999999999 999999999875321 111 11
Q ss_pred CCCCceeEEEccccccccCCCceeeccHHH-HHHHHhcCCc-----eeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHH
Q 011567 302 VPVDKIDIVTAAMGHALATEGGFCTGSARV-VDHQRLSSSG-----YVFSASLPPYLASAAITAIDVLEE-NPDLITKLK 374 (483)
Q Consensus 302 v~~~~~Di~~~s~~K~lg~~GG~i~~~~~~-~~~~~~~~~~-----~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~ 374 (483)
. .+|+++.|++|++|+..||++++++. .+.++....+ .....+.++..++++.++++.+++ .+++.++++
T Consensus 236 ~---~~d~~~~s~~K~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~ 312 (432)
T 3a9z_A 236 L---GVDFLTIVGHKFYGPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMR 312 (432)
T ss_dssp H---CCSEEEEEGGGTTCCSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c---CCCEEEEehhHhcCCcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1 24888999999999778999888765 2222211000 011224567777777778887653 246788889
Q ss_pred HHHHHHHHhhccCCCceee--cC-----CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccc----
Q 011567 375 KNTAILRTGLSDIHGLSIA--SN-----PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLD---- 443 (483)
Q Consensus 375 ~~~~~l~~~L~~~~~~~i~--~~-----~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~---- 443 (483)
++++++.+.|++++|+.+. .+ ....++.+.+..... + ..++.+. + .|+.+..+......
T Consensus 313 ~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~-l--~~i~~~~G~~~~~~~~~~ 382 (432)
T 3a9z_A 313 DIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQL----R---GYMVLAQ-C--QTLLASVGASCHSDHEDR 382 (432)
T ss_dssp HHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTC----C---HHHHHHH-C--SSEECBSSCGGGGGGTTS
T ss_pred HHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCC----c---HHHHHHH-h--cCeEEeccccccCCCCCC
Confidence 9999999999875555442 22 123367777753110 1 1123332 2 26666543211100
Q ss_pred ------cCCC-----CCceEEEccCCCCHHHHHHHHHHHHHHHHHHH
Q 011567 444 ------KCRL-----PVGIRLFVSAAHSEADLVKACESLKRISAVVL 479 (483)
Q Consensus 444 ------~~~~-----~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~ 479 (483)
.... +..||++++..+|++|+++++++|+++++++.
T Consensus 383 ~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~ 429 (432)
T 3a9z_A 383 PSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLE 429 (432)
T ss_dssp CCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 0011 14599999988899999999999999987753
No 198
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.92 E-value=3.3e-23 Score=211.32 Aligned_cols=231 Identities=16% Similarity=0.112 Sum_probs=177.2
Q ss_pred hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh----hhcCCeEEEe-cCCCHHH
Q 011567 153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL----YLSRSTVVYF-KHNDMDS 227 (483)
Q Consensus 153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~----~~s~~~v~~~-~~~d~~~ 227 (483)
.+...+++++|++++|.++++++++|++|+..+++++.++||.|++....|.++...+ ...|.+++.+ +.+|+++
T Consensus 57 ~~~~~~l~~~la~~~g~~~~v~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~ 136 (421)
T 2ctz_A 57 NPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEE 136 (421)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHH
T ss_pred ChHHHHHHHHHHHHhCCCceEEecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCCHHH
Confidence 3678999999999999999999999999999999999999999999999888877665 6678999999 8889988
Q ss_pred HHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCcc-ccccccCCCCccccccCCCCCc
Q 011567 228 LRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESN-SFGVLGRSGRGLTEHCGVPVDK 306 (483)
Q Consensus 228 Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~-s~g~lg~~G~g~~~~~~v~~~~ 306 (483)
+++.+++ ++++|+++++++++|.+.|+++|+++|++||+++|+||+| ++|..+ +.+ +. .
T Consensus 137 l~~~i~~----------~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~---~~~----~~---~ 196 (421)
T 2ctz_A 137 FLALTDE----------KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLL---RPL----AW---G 196 (421)
T ss_dssp HHHHCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSC---CGG----GG---T
T ss_pred HHHhhcc----------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccccC---Ccc----cc---C
Confidence 8887743 3788999999999999999999999999999999999999 766432 222 22 2
Q ss_pred eeEEEccccccccCC----Cceeecc--HHH----HHHHHhc---CC---------------------ceeecCCCcHHH
Q 011567 307 IDIVTAAMGHALATE----GGFCTGS--ARV----VDHQRLS---SS---------------------GYVFSASLPPYL 352 (483)
Q Consensus 307 ~Di~~~s~~K~lg~~----GG~i~~~--~~~----~~~~~~~---~~---------------------~~~fs~~~~p~~ 352 (483)
+|+++.|++|++++. ||+++++ .++ .+.++.. .. ...++..++|+.
T Consensus 197 ~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~ 276 (421)
T 2ctz_A 197 AALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFE 276 (421)
T ss_dssp CSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHH
T ss_pred CeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHH
Confidence 489999999999853 4555542 122 1222210 00 011344678888
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeec------------------CCCCCEEEEEec
Q 011567 353 ASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIAS------------------NPESPIVFLILE 406 (483)
Q Consensus 353 ~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~------------------~~~~~i~~l~l~ 406 (483)
++++...++.+. ...++..++.+++.+.|.+.+++.... ...++++.+.++
T Consensus 277 a~~~~~~l~~l~---~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~ 345 (421)
T 2ctz_A 277 AWVVLLGMETLS---LRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLK 345 (421)
T ss_dssp HHHHHHHHTTHH---HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEET
T ss_pred HHHHHcCcchHH---HHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeC
Confidence 888877776653 356667789999999999888876542 235778999884
No 199
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.92 E-value=2.8e-23 Score=211.68 Aligned_cols=230 Identities=17% Similarity=0.176 Sum_probs=179.0
Q ss_pred hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHh----HhhhcCCeEEEecCCCHHHH
Q 011567 153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN----GLYLSRSTVVYFKHNDMDSL 228 (483)
Q Consensus 153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~----g~~~s~~~v~~~~~~d~~~L 228 (483)
.+...+|+++|++++|.+.++++++|++|+..++.+++++||.|+++.+.|.++.. .+...|.+++.++.+|+++|
T Consensus 81 ~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l 160 (430)
T 3ri6_A 81 NPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAV 160 (430)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHH
T ss_pred CHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHH
Confidence 36789999999999999999999999999999999999999999999999988776 56678999999999999988
Q ss_pred HHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCcee
Q 011567 229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKID 308 (483)
Q Consensus 229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~D 308 (483)
++.++. ++++|++|++++++|.+.|+++|+++|++||+++|+|++++.+.+- +. ..+ .+|
T Consensus 161 ~~ai~~----------~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~~---~~--~~~-----g~d 220 (430)
T 3ri6_A 161 EHACDE----------TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLL---EA--KRL-----GVD 220 (430)
T ss_dssp HHHCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTTC---CG--GGG-----TCS
T ss_pred HHhhCC----------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccC---Ch--HHc-----CCE
Confidence 887743 3789999999999999999999999999999999999999865431 11 112 348
Q ss_pred EEEccccccccC----CCceee--ccHHH------------------HHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh
Q 011567 309 IVTAAMGHALAT----EGGFCT--GSARV------------------VDHQRLSSSGYVFSASLPPYLASAAITAIDVLE 364 (483)
Q Consensus 309 i~~~s~~K~lg~----~GG~i~--~~~~~------------------~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~ 364 (483)
+++.|++|++|+ .||+++ ++..+ ++..+.. ....+++.++|..+..++..++.+.
T Consensus 221 iv~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~-~~~~~g~~~~~~~a~l~l~~l~~l~ 299 (430)
T 3ri6_A 221 IEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKE-VFQNLGPSLSPHNAYLQSLGLETMA 299 (430)
T ss_dssp EEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHT-HHHHHCCCCCHHHHHHHHHHHHHHH
T ss_pred EEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHH-HHHhcCCCCCHHHHHHHHhhhhhHH
Confidence 999999999974 578877 43222 2222211 1113445678888887777777664
Q ss_pred cCcHHHHHHHHHHHHHHHhhccCCCceeecCCC----------------CC-EEEEEec
Q 011567 365 ENPDLITKLKKNTAILRTGLSDIHGLSIASNPE----------------SP-IVFLILE 406 (483)
Q Consensus 365 ~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~----------------~~-i~~l~l~ 406 (483)
...++..+++..+.+.|++.+++..+..+. +. ++++.++
T Consensus 300 ---~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~ 355 (430)
T 3ri6_A 300 ---LRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELE 355 (430)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECS
T ss_pred ---HHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEEC
Confidence 367788899999999998887765322222 45 9999985
No 200
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.92 E-value=2.9e-23 Score=211.05 Aligned_cols=340 Identities=11% Similarity=0.062 Sum_probs=209.7
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCC--CCCCcccChHHHHHHHHHHHhhh----C----CCCEEEeccc
Q 011567 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSC--GPRGFYGTIDVHLDCEARIAKFL----G----TPDSILYSYG 178 (483)
Q Consensus 109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~--~~~~~~g~~~~~~~l~~~La~~~----g----~e~~i~~~sG 178 (483)
..++||+.+++-. .|.+.+++.+++.+.-.... .....|+......++++.+|+++ | .++.+++++|
T Consensus 31 ~~~i~l~~g~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~ 107 (417)
T 3g7q_A 31 PGAIMLGGGNPAH---IPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGS 107 (417)
T ss_dssp -CCEECSCCCCCC---CHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCH
T ss_pred CCceEecCcCCCC---CChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCc
Confidence 4689998874422 24444444444332100000 00002333333567777777776 2 2466777888
Q ss_pred HHHHHhhhhhhccCCc-----EEEEc-CCchhHHHhHhh------hcCCeEEEecCC------CHHHHHHHHHHhhhhhh
Q 011567 179 LSTMFSAIPCFCKKGD-----LIVAD-EGVHWGIQNGLY------LSRSTVVYFKHN------DMDSLRNTLERVTADNK 240 (483)
Q Consensus 179 ~~a~~~ai~~~~~~gd-----iI~~~-~~~h~s~~~g~~------~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~ 240 (483)
++|+..++++++++|| .|++. .+.|..+..... ..+..+..++.+ |+++|+ + ..
T Consensus 108 t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~---~~--- 179 (417)
T 3g7q_A 108 QSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--I---GE--- 179 (417)
T ss_dssp HHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--C---CT---
T ss_pred HHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--c---cc---
Confidence 9999999999999876 77775 777766554432 122344444432 677776 2 22
Q ss_pred hccCccEEEEEecccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccc
Q 011567 241 RAKKLRRYIVVEAVYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHA 317 (483)
Q Consensus 241 ~~~~~~~~iv~e~v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~ 317 (483)
.+++|+++.+++++|.+.| +++|+++|++||+++|+||+|+.+..+....+.. ....+.+++++|+||
T Consensus 180 ----~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~----~~~~~~~i~~~s~sK- 250 (417)
T 3g7q_A 180 ----ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEAR----PLWNPNIILCMSLSK- 250 (417)
T ss_dssp ----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCC----CCCCTTEEEEEESGG-
T ss_pred ----CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccc----cCCCCCEEEEEechh-
Confidence 3678888888899999999 8999999999999999999997532211101111 111345888999999
Q ss_pred ccCCC---ceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh---cCcH-HHHHHHHHHHHHHHhhcc-CC-
Q 011567 318 LATEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE---ENPD-LITKLKKNTAILRTGLSD-IH- 388 (483)
Q Consensus 318 lg~~G---G~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~---~~~~-~~~~l~~~~~~l~~~L~~-~~- 388 (483)
++..| ||+++++++++.++.....+.++. +++.++++.+.++... ...+ +.+.++++.+.+.+.|.+ ++
T Consensus 251 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 328 (417)
T 3g7q_A 251 LGLPGSRCGIIIANDKTITAIANMNGIISLAP--GGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSE 328 (417)
T ss_dssp GTCTTSCCEEEECCHHHHHHHHHHHHHHCCCC--CSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCT
T ss_pred ccCCCcceEEEEeCHHHHHHHHHhhcceeeCC--CcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 55445 899999999988776544444433 4555555555554221 1111 455666777777777755 34
Q ss_pred -CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCC----CCCceEEEccCCCCHHH
Q 011567 389 -GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCR----LPVGIRLFVSAAHSEAD 463 (483)
Q Consensus 389 -~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~----~~~~lRi~~~~~~t~ed 463 (483)
++.+..+..+.++++.++.... + ..+++..+ .++||.+.++..+...... .+..+||+++. |+++
T Consensus 329 ~~~~~~~~~~g~~~~~~~~~~~~----~---~~~l~~~l-~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~~~ 398 (417)
T 3g7q_A 329 ERCLIHKPEGAIFLWLWFKDLPI----T---TELLYQRL-KARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EPDK 398 (417)
T ss_dssp TTCEEECCCBSSEEEEECTTCSS----C---HHHHHHHH-HHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CHHH
T ss_pred CCceeeCCCcceEEEEEcCCCCC----C---HHHHHHHH-HHCCEEEECchhhCCCCccccccCCCeEEEEecC--CHHH
Confidence 4666655567888888753110 1 23566654 4569999987543221100 02359999975 9999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 011567 464 LVKACESLKRISAVVLR 480 (483)
Q Consensus 464 i~~~~~~l~~~~~~~~~ 480 (483)
|++++++|+++++++..
T Consensus 399 i~~~~~~l~~~l~~~~~ 415 (417)
T 3g7q_A 399 IEAGVKILAEEIERAWR 415 (417)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988764
No 201
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.92 E-value=3.8e-23 Score=209.56 Aligned_cols=285 Identities=14% Similarity=0.119 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhH----hhhcCCeEEEecCCCHHHHH
Q 011567 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHNDMDSLR 229 (483)
Q Consensus 154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g----~~~s~~~v~~~~~~d~~~Le 229 (483)
+...+|+++|++++|.++++++++|++|+..++. +.++||.|++..+.|.++... ++..|.+++.++.+|+++++
T Consensus 67 p~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~ 145 (403)
T 3cog_A 67 PTRNCLEKAVAALDGAKYCLAFASGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLE 145 (403)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTTSHHHHH
T ss_pred chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCCCHHHHH
Confidence 5678999999999999999999999999999999 889999999888888775543 35678899999988888888
Q ss_pred HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcC-cEEEEeCccccccccCCCCccccccCCCCCcee
Q 011567 230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYR-FRVFLDESNSFGVLGRSGRGLTEHCGVPVDKID 308 (483)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~-~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~D 308 (483)
+.++. ++++|+++++++++|.+.|+++|+++|++|| +++|+||+|+.+.+.. . ++ .++|
T Consensus 146 ~~i~~----------~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~---~----~~---~~~d 205 (403)
T 3cog_A 146 AAITP----------ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQR---P----LA---LGAD 205 (403)
T ss_dssp HHCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCC---T----TT---TTCS
T ss_pred HhcCc----------CCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCC---c----cc---cCCe
Confidence 77642 3789999999999999999999999999999 9999999998765431 1 12 2359
Q ss_pred EEEccccccccCC----Cceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Q 011567 309 IVTAAMGHALATE----GGFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG 383 (483)
Q Consensus 309 i~~~s~~K~lg~~----GG~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~ 383 (483)
+++.|++|++++. +|++++ ++++++.++..... ++...+|+.+.++..+++.+. ...++..++...+.+.
T Consensus 206 iv~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~--~g~~~~~~~~~~~~~~l~~l~---~r~~~~~~n~~~l~~~ 280 (403)
T 3cog_A 206 ISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNS--LGAVPSPIDCYLCNRGLKTLH---VRMEKHFKNGMAVAQF 280 (403)
T ss_dssp EEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHH
T ss_pred EEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHh--cCCCCCHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHH
Confidence 9999999999843 488887 47887776543222 344567888777777766442 3455555555555554
Q ss_pred hcc--------------CCCceeecC---CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEee---c-----
Q 011567 384 LSD--------------IHGLSIASN---PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTS---K----- 438 (483)
Q Consensus 384 L~~--------------~~~~~i~~~---~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~---~----- 438 (483)
|++ .+++.+..+ ..++++.+.++.. . . + ..+++++.|+++... .
T Consensus 281 l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~------~-~---~-~~~~l~~~~i~~~~~s~G~~~sl~ 349 (403)
T 3cog_A 281 LESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT------L-Q---H-AEIFLKNLKLFTLAESLGGFESLA 349 (403)
T ss_dssp HHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC------H-H---H-HHHHHHHCSSSEECSCCSSSSCEE
T ss_pred HhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC------H-H---H-HHHHHHhCCcceEccCCCCcceee
Confidence 433 234433221 2477888887421 1 1 1 223455567765432 1
Q ss_pred -ccc-cccC-----------CCCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567 439 -RSM-LDKC-----------RLPVGIRLFVSAAHSEADLVKACESLKRIS 475 (483)
Q Consensus 439 -~~~-~~~~-----------~~~~~lRi~~~~~~t~edi~~~~~~l~~~~ 475 (483)
.|. ..++ ..+..||+++....++++|+.+.++|++++
T Consensus 350 ~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~ 399 (403)
T 3cog_A 350 ELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAH 399 (403)
T ss_dssp ECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHC
T ss_pred ecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 110 0011 113459999999888888888777776543
No 202
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.92 E-value=3.8e-23 Score=214.14 Aligned_cols=319 Identities=13% Similarity=0.124 Sum_probs=219.5
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCC-CcccChHHHHHHHHHHHhhhCCCCEEEe-cccHHHHHhhhhhh----ccCCc---
Q 011567 124 GHEKLLESCTSALEKYGVGSCGPR-GFYGTIDVHLDCEARIAKFLGTPDSILY-SYGLSTMFSAIPCF----CKKGD--- 194 (483)
Q Consensus 124 ~~p~i~~a~~~~l~~~g~g~~~~~-~~~g~~~~~~~l~~~La~~~g~e~~i~~-~sG~~a~~~ai~~~----~~~gd--- 194 (483)
.+|++.+++.+.+..| +...+. ...|..+...++++.+++++|.+..+++ ++|++++..++.++ .++||
T Consensus 78 ~~p~v~~~~~~~~~~~--~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~ 155 (474)
T 1wyu_B 78 YNPKLHEEAARLFADL--HPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRT 155 (474)
T ss_dssp CCCHHHHHHHHTTSSC--CTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred CCHHHHHHHHHHHHhc--CCCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 4688888877663322 111111 2445567889999999999998877656 78888888765543 35676
Q ss_pred --EEEEcCCchhHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc-cChHH
Q 011567 195 --LIVADEGVHWGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI-APLDE 266 (483)
Q Consensus 195 --iI~~~~~~h~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i-~~L~~ 266 (483)
.|+++.++|+++...+...|.+++.++.+ |+++|++.+.+ .+++|++++. +++|.+ .++++
T Consensus 156 r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~~----------~t~~v~~~~p-n~~G~~~~~l~~ 224 (474)
T 1wyu_B 156 RRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKRELGP----------HVAALMLTNP-NTLGLFERRILE 224 (474)
T ss_dssp CCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCST----------TEEEEEECSS-CTTSCCCTTHHH
T ss_pred CCEEEEeCCcChhhHHHHHHCCCEEEEecCCCCCCcCHHHHHHhhCC----------CceEEEEECC-CCCcccCCCHHH
Confidence 88889999999999999999999998875 78888877642 2677777775 468988 69999
Q ss_pred HHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCC-------CceeeccHHHHHHHHh--
Q 011567 267 LIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATE-------GGFCTGSARVVDHQRL-- 337 (483)
Q Consensus 267 l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~-------GG~i~~~~~~~~~~~~-- 337 (483)
|+++|++||+++|+||+|+.+.+|. .-...++ +|++++|++|+|+.+ .|++++++++++.+..
T Consensus 225 i~~l~~~~g~~li~Dea~~~~~~g~---~~~~~~g-----~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~ 296 (474)
T 1wyu_B 225 ISRLCKEAGVQLYYDGANLNAIMGW---ARPGDMG-----FDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPL 296 (474)
T ss_dssp HHHHHHHHTCEEEEEGGGGGGTTTT---CCHHHHT-----CSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCE
T ss_pred HHHHHHHcCCEEEEeCchhhhhccC---CCcccCC-----CcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCe
Confidence 9999999999999999998776542 1111222 489999999999733 4888888888766541
Q ss_pred ---cCCceee-----------c-CCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhccCCCceeecCC-CCC
Q 011567 338 ---SSSGYVF-----------S-ASLPPYLASAAITAIDVLEE--NPDLITKLKKNTAILRTGLSDIHGLSIASNP-ESP 399 (483)
Q Consensus 338 ---~~~~~~f-----------s-~~~~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~-~~~ 399 (483)
.+..|.+ . ...+++.++++.+.++.+.. ..+..++..++++++.+.|+++ |+++.... ...
T Consensus 297 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~ 375 (474)
T 1wyu_B 297 VERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGPSMH 375 (474)
T ss_dssp EEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSSCCS
T ss_pred eeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCCcce
Confidence 0111211 1 12466677777777764422 2345788889999999999887 87763222 111
Q ss_pred EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 400 IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 400 i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
.+.+.+. .+ ....++++.+++ +||.+....++.. .+..+||+++..+|++|+++++++|++++++
T Consensus 376 ~~~~~~~--~~------~~~~~l~~~L~~-~Gi~~~~~~~~~~----~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 376 EFVAQPP--EG------FRALDLAKGLLE-LGFHPPTVYFPLI----VKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp CEEEBCS--TT------CCHHHHHHHHHH-TTCCCCEESCSTT----STTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred EEEEEcC--CC------CCHHHHHHHHHH-CCccccccccccc----cCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 1333331 11 013357776665 4998643333211 1245999999889999999999999988743
No 203
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.92 E-value=6.2e-24 Score=211.62 Aligned_cols=320 Identities=13% Similarity=0.135 Sum_probs=215.9
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHHhcC-CCCC----CCCCcccChHHHHHHHHHHHhhhCCC--CEEEe-ccc-H
Q 011567 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYG-VGSC----GPRGFYGTIDVHLDCEARIAKFLGTP--DSILY-SYG-L 179 (483)
Q Consensus 109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g-~g~~----~~~~~~g~~~~~~~l~~~La~~~g~e--~~i~~-~sG-~ 179 (483)
|+++++..+.+ ..+|.+.+++.+.++++. .+.. ..+ .++..+...++++++++++|.+ +.+++ +++ +
T Consensus 2 ~~~~~~~~g~~---~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt 77 (360)
T 1w23_A 2 KQVFNFNAGPS---ALPKPALERAQKELLNFNDTQMSVMELSHR-SQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGAS 77 (360)
T ss_dssp CCCEECCSSSC---CCCHHHHHHHHHTSSSSTTSSSCGGGSCTT-SHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHH
T ss_pred CceEeecCCCc---CCCHHHHHHHHHHhhhhccccccccccCCC-CHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcch
Confidence 34566665533 356899999998887641 1111 111 2334457889999999999975 35555 555 7
Q ss_pred HHHHhhhhhhcc---CCcEEEEcCCchhHHHhHhhhcCCeEEEecC------CCHHHHHH-HHHHhhhhhhhccCccEEE
Q 011567 180 STMFSAIPCFCK---KGDLIVADEGVHWGIQNGLYLSRSTVVYFKH------NDMDSLRN-TLERVTADNKRAKKLRRYI 249 (483)
Q Consensus 180 ~a~~~ai~~~~~---~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~------~d~~~Le~-~l~~~~~~~~~~~~~~~~i 249 (483)
+|+..++.++.. ++|.|+++...|.+... +...| +++.++. .|+++|++ .+. + ++++|
T Consensus 78 ~al~~~~~~l~~~~~~g~~vi~~~~~~~~~~~-~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~---~-------~~k~v 145 (360)
T 1w23_A 78 LQFTMLPMNLLTKGTIGNYVLTGSWSEKALKE-AKLLG-ETHIAASTKANSYQSIPDFSEFQLN---E-------NDAYL 145 (360)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSHHHHHHHHH-HHTTS-EEEEEEECGGGTSCSCCCGGGCCCC---T-------TEEEE
T ss_pred HHHHHHHHHhcCCCCcccEEEecchhHHHHHH-HHHhC-CeEEeecccccCcCCccchHhhccC---C-------CCCEE
Confidence 889988888775 46778888777766433 45567 8777653 25555655 331 1 36788
Q ss_pred EEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeecc
Q 011567 250 VVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGS 328 (483)
Q Consensus 250 v~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~ 328 (483)
++.++++++|.+.| +++++||+++|+||+|+.|... .++ .+.|++++|++|++|+.| ||++++
T Consensus 146 ~~~~~~nptG~~~~-----~i~~~~~~~li~D~a~~~~~~~---------~~~--~~~di~~~s~sK~~~~~G~G~~~~~ 209 (360)
T 1w23_A 146 HITSNNTIYGTQYQ-----NFPEINHAPLIADMSSDILSRP---------LKV--NQFGMIYAGAQKNLGPSGVTVVIVK 209 (360)
T ss_dssp EEESEETTTTEECS-----SCCCCCSSCEEEECTTTTTSSC---------CCG--GGCSEEEEETTTTTSCTTCEEEEEE
T ss_pred EEeCCCCCcceecc-----cccccCCceEEEechhhcCCCC---------cCc--ccCCEEEEEcccccCCCCcEEEEEc
Confidence 88888999999877 3444899999999999875321 112 123789999999999777 999998
Q ss_pred HHHHHHHHhcCC-----------ceeecCCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhhccCCCc-eee
Q 011567 329 ARVVDHQRLSSS-----------GYVFSASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGL-SIA 393 (483)
Q Consensus 329 ~~~~~~~~~~~~-----------~~~fs~~~~p~~~aaa~~al~~l~~~---~~~~~~l~~~~~~l~~~L~~~~~~-~i~ 393 (483)
+++++.++.... ++.+ ++.+...++++.++++.+.+. +++.++++++.+++.+.|++++++ ...
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 288 (360)
T 1w23_A 210 KDLLNTKVEQVPTMLQYATHIKSDSLY-NTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGH 288 (360)
T ss_dssp HHHHCSCCTTCCGGGCHHHHHHTTTCS-SCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEES
T ss_pred HHHHhhcccCCcchhhhhhhhhccCCC-CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCccccc
Confidence 888765543211 1111 234666666777788776542 467888999999999999887544 432
Q ss_pred --cCCCCC-EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHH
Q 011567 394 --SNPESP-IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACES 470 (483)
Q Consensus 394 --~~~~~~-i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~ 470 (483)
....++ ++++.+++ .....++.+. |.++||.+.+... .+..+|++++..+|++|+++++++
T Consensus 289 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-l~~~gi~~~~~~~-------~~~~iRis~~~~~~~~~i~~~~~~ 352 (360)
T 1w23_A 289 AEKGSRSLMNVTFNLRN--------EELNQQFLAK-AKEQGFVGLNGHR-------SVGGCRASIYNAVPIDACIALREL 352 (360)
T ss_dssp SCGGGBCSSEEEEECSS--------HHHHHHHHHH-HHHTTEESCBCCT-------TTCSEEEECCTTSCHHHHHHHHHH
T ss_pred CCchhccCcEEEEEcCC--------CccHHHHHHH-HHHCCeeeecCCC-------CCCeEEEEecCCCCHHHHHHHHHH
Confidence 211344 78887732 1223456666 4456998865432 124599999998999999999999
Q ss_pred HHHHHHH
Q 011567 471 LKRISAV 477 (483)
Q Consensus 471 l~~~~~~ 477 (483)
|++++++
T Consensus 353 l~~~~~~ 359 (360)
T 1w23_A 353 MIQFKEN 359 (360)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9988754
No 204
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.92 E-value=2.5e-23 Score=212.12 Aligned_cols=343 Identities=10% Similarity=0.011 Sum_probs=220.3
Q ss_pred EEEeecCCCCC--CCCChHHHHHHH--HHHHhcCCCCCCCCCcc-cChHHHHHHHHHHHhhhCCC--CEEEecccHHHHH
Q 011567 111 VVNFASANYLG--LIGHEKLLESCT--SALEKYGVGSCGPRGFY-GTIDVHLDCEARIAKFLGTP--DSILYSYGLSTMF 183 (483)
Q Consensus 111 ~id~~s~~~lG--~~~~p~i~~a~~--~~l~~~g~g~~~~~~~~-g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~ 183 (483)
.+||+.+.+-- +..++.+.+++. +.++ .+. ....| +......+|++.|+++++.+ +.++.+++++++.
T Consensus 27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~-~~~----~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~ 101 (423)
T 3ez1_A 27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRM-DGL----DLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQ 101 (423)
T ss_dssp CEESCCCCCCHHHHHTTGGGGGSCCGGGCEE-TTE----ETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHH
T ss_pred eEecCCCCCChHhCCCcHHHHHHHhhhHHhh-cch----hhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHH
Confidence 57888763310 213346766664 3332 111 01123 33344578999999999864 4455566678886
Q ss_pred --hhhhhhcc--C---------CcEEEEcCCchhHHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCcc
Q 011567 184 --SAIPCFCK--K---------GDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLR 246 (483)
Q Consensus 184 --~ai~~~~~--~---------gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~ 246 (483)
.+++++.. + ||.|++..+.|..+...+...|.+++.++.+ |+++|++.+++. . ++
T Consensus 102 ~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~-~-------~~ 173 (423)
T 3ez1_A 102 GLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSDGPDVDAVERLAGTD-P-------SV 173 (423)
T ss_dssp HHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETTEECHHHHHHHHHSC-T-------TE
T ss_pred HHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCCCCCHHHHHHHHhhC-C-------Cc
Confidence 78888877 7 5899999999999999999999998887754 788888888521 1 26
Q ss_pred EEEEEe-cccCCCCCccChH---HHHHHH-HHcCcEEEEeCccccccccC-CCCccccccCC----CCCceeEEEccccc
Q 011567 247 RYIVVE-AVYQNSGQIAPLD---ELIRLK-EKYRFRVFLDESNSFGVLGR-SGRGLTEHCGV----PVDKIDIVTAAMGH 316 (483)
Q Consensus 247 ~~iv~e-~v~~~~G~i~~L~---~l~~l~-~k~~~~li~DEa~s~g~lg~-~G~g~~~~~~v----~~~~~Di~~~s~~K 316 (483)
++|++. .+++++|.+.|.+ +|+++| ++||+++|+||+|+.+.++. .+......+.+ +..+.+++++|+||
T Consensus 174 ~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK 253 (423)
T 3ez1_A 174 KGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSK 253 (423)
T ss_dssp EEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTT
T ss_pred eEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchh
Confidence 677655 5778899999965 888888 99999999999998654443 11111122211 12345788999999
Q ss_pred ccc--CCCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHH-Hh----cCcHHHHHHHHHHHHHHHh----hc
Q 011567 317 ALA--TEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDV-LE----ENPDLITKLKKNTAILRTG----LS 385 (483)
Q Consensus 317 ~lg--~~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~-l~----~~~~~~~~l~~~~~~l~~~----L~ 385 (483)
+++ ...||+++++++++.++.......+ +.+++...++.++++. .. ...+..+.++++.+.+.+. |.
T Consensus 254 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 331 (423)
T 3ez1_A 254 ITFAGAGLGFVASSEDNIRWLSKYLGAQSI--GPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELG 331 (423)
T ss_dssp TSCSSSSCEEEEECHHHHHHHHHHHHHSCS--CCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCcceEEEEeCHHHHHHHHHHHhhhcc--CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 742 3348999999998887654333333 3356666666666654 11 1122344444444444444 44
Q ss_pred cCC-CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEe-ecccccccCCCCCceEEEccCCCCHHH
Q 011567 386 DIH-GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVT-SKRSMLDKCRLPVGIRLFVSAAHSEAD 463 (483)
Q Consensus 386 ~~~-~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~-~~~~~~~~~~~~~~lRi~~~~~~t~ed 463 (483)
++. ++.+..+..+.++++.++.. + ...+... ++++||.+.+ +.+........+..+||+++.. |+++
T Consensus 332 ~~~~~~~~~~p~~g~~~~~~~~~~------~---~~~~~~~-l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~ 400 (423)
T 3ez1_A 332 EGGEYATWTLPKGGYFISLDTAEP------V---ADRVVKL-AEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEE 400 (423)
T ss_dssp TTTSSEEECCCSBSSCEEEEESSS------C---HHHHHHH-HHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHH
T ss_pred cCCCceEEeCCCccEEEEEECCCC------c---HHHHHHH-HHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHH
Confidence 442 35665555677888888532 1 2245554 5567999987 4332211111134599999655 9999
Q ss_pred HHHHHHHHHHHHHHHH
Q 011567 464 LVKACESLKRISAVVL 479 (483)
Q Consensus 464 i~~~~~~l~~~~~~~~ 479 (483)
+++++++|+++++++.
T Consensus 401 i~~~~~~l~~~l~~~~ 416 (423)
T 3ez1_A 401 VRTAMQVVAACIRLAT 416 (423)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 205
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.91 E-value=1.6e-23 Score=214.00 Aligned_cols=309 Identities=13% Similarity=0.006 Sum_probs=207.4
Q ss_pred ccChHHHHHHHHHHHhhhCCC--CEEEecccHHHH--Hhhhhhhcc--C----------CcEEEEcCCchhHHHhHhhhc
Q 011567 150 YGTIDVHLDCEARIAKFLGTP--DSILYSYGLSTM--FSAIPCFCK--K----------GDLIVADEGVHWGIQNGLYLS 213 (483)
Q Consensus 150 ~g~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~--~~ai~~~~~--~----------gdiI~~~~~~h~s~~~g~~~s 213 (483)
|+...-..+|++.||++++.+ +.++.+++++++ ..+++++.. + ||.|+++.++|..+...++..
T Consensus 74 Y~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~ 153 (427)
T 3ppl_A 74 YGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERF 153 (427)
T ss_dssp SCCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHc
Confidence 443344578999999999864 444556666788 477888776 5 899999999999999999999
Q ss_pred CCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccEEEEEe-cccCCCCCccChH---HHHHHH-HHcCcEEEEeCcc
Q 011567 214 RSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRRYIVVE-AVYQNSGQIAPLD---ELIRLK-EKYRFRVFLDESN 284 (483)
Q Consensus 214 ~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e-~v~~~~G~i~~L~---~l~~l~-~k~~~~li~DEa~ 284 (483)
|.+++.++.+ |+++|++.++. . ++++|++. ..++++|.+.|.+ +|+++| ++||+++|+||+|
T Consensus 154 g~~~~~v~~~~~g~d~~~l~~~l~~--~-------~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y 224 (427)
T 3ppl_A 154 GFEMISVPMNEDGPDMDAVEELVKN--P-------QVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAY 224 (427)
T ss_dssp TCEEEEEEEETTEECHHHHHHHTTS--T-------TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTT
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHhc--C-------CCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCC
Confidence 9998887754 77888777631 1 25677766 5678899999965 888999 9999999999999
Q ss_pred ccccccCCCCccccccCC----CCCceeEEEcccccccc--CCCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHH
Q 011567 285 SFGVLGRSGRGLTEHCGV----PVDKIDIVTAAMGHALA--TEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAIT 358 (483)
Q Consensus 285 s~g~lg~~G~g~~~~~~v----~~~~~Di~~~s~~K~lg--~~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~ 358 (483)
+.+.++..+......+++ +..+.+++++|+||+++ ...||+++++++++.++.......++ .+++...++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~--~~~~~q~~~~~ 302 (427)
T 3ppl_A 225 AVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAGIRGIG--PNKVNQLAHAR 302 (427)
T ss_dssp TTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHCSC--CCHHHHHHHHH
T ss_pred cccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHHHhhcccCC--CCHHHHHHHHH
Confidence 977666443222222221 12345788999999853 23499999999988876543333333 35555555555
Q ss_pred HHHH---Hh-cCcHHHHHHHHHHHHHHHhhcc----CCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhC
Q 011567 359 AIDV---LE-ENPDLITKLKKNTAILRTGLSD----IHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKED 430 (483)
Q Consensus 359 al~~---l~-~~~~~~~~l~~~~~~l~~~L~~----~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~ 430 (483)
+++. +. ...+..+.++++.+.+.+.|.+ +.++.+..+..+.++++.++.. + ..++.+. |.++
T Consensus 303 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~------~---~~~~~~~-l~~~ 372 (427)
T 3ppl_A 303 YFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG------T---ASRVAEL-AKEA 372 (427)
T ss_dssp HHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT------C---HHHHHHH-HHHT
T ss_pred HHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc------h---HHHHHHH-HHHC
Confidence 5432 11 1123455555566666555533 3346655555677888888532 1 2345554 4567
Q ss_pred CEEEEe-ecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567 431 GVFVVT-SKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 431 Gv~v~~-~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~ 480 (483)
||.+.+ +.+........+..+||+++.. |+++|++++++|+++++++..
T Consensus 373 gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~~~ 422 (427)
T 3ppl_A 373 GIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVATCVLLAAA 422 (427)
T ss_dssp TEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 999988 3322211111235599999654 999999999999999987643
No 206
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.91 E-value=5e-23 Score=205.50 Aligned_cols=307 Identities=12% Similarity=0.115 Sum_probs=209.7
Q ss_pred CChHHHHHHHHHHHhcCCCCCCC---CCcc--cChHHHHHHHHHHHhhhCCC---CEEEe-cccHHHHHhhhhhhccCCc
Q 011567 124 GHEKLLESCTSALEKYGVGSCGP---RGFY--GTIDVHLDCEARIAKFLGTP---DSILY-SYGLSTMFSAIPCFCKKGD 194 (483)
Q Consensus 124 ~~p~i~~a~~~~l~~~g~g~~~~---~~~~--g~~~~~~~l~~~La~~~g~e---~~i~~-~sG~~a~~~ai~~~~~~gd 194 (483)
.+|.+++++.+.+.+++ +.+++ ...+ +..+...++++++++++|.+ +.+++ ++|++++..++.++.++||
T Consensus 15 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd 93 (362)
T 2c0r_A 15 LPLEVLERAQAEFVDYQ-HTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQ 93 (362)
T ss_dssp CCHHHHHHHHHTSSSST-TSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTC
T ss_pred CCHHHHHHHHHHHhhhh-hcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCCCCC
Confidence 57899999999887652 22111 1111 12346789999999999976 34556 6788999999999999999
Q ss_pred EEEEcCCchhHH--HhHhhhcCCeEEEecCC---------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCc-c
Q 011567 195 LIVADEGVHWGI--QNGLYLSRSTVVYFKHN---------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI-A 262 (483)
Q Consensus 195 iI~~~~~~h~s~--~~g~~~s~~~v~~~~~~---------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i-~ 262 (483)
.|++....|++. ...++..| +++.++.+ |.++++ ..+ ++++|++.++.+++|.. .
T Consensus 94 ~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~-----i~~-------~t~~v~~~~~~n~tG~~~~ 160 (362)
T 2c0r_A 94 TANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ-----LQD-------NAAYLHLTSNETIEGAQFK 160 (362)
T ss_dssp EEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC-----CCT-------TEEEEEEESEETTTTEECS
T ss_pred eEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc-----cCC-------CcCEEEEeCCcCccceecc
Confidence 876654444442 34555667 77666532 222221 111 36778887778889994 7
Q ss_pred ChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHHHHHHHhcCCc
Q 011567 263 PLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLSSSG 341 (483)
Q Consensus 263 ~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~~~~~~~~~~~ 341 (483)
|+++| ||+++|+||+|+.|... .++ .+.|++++|++|++|+.| ||+++++++++.++.....
T Consensus 161 ~l~~i------~~~~vivD~a~~~~~~~---------~~~--~~~d~~~~s~~K~~g~~G~G~l~~~~~~~~~l~~~~~~ 223 (362)
T 2c0r_A 161 AFPDT------GSVPLIGDMSSDILSRP---------FDL--NQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPT 223 (362)
T ss_dssp SCCCC------TTSCEEEECTTTTTSSC---------CCG--GGCSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCG
T ss_pred ccccc------CCCEEEEEChhhccCCc---------cch--hHCcEEEEeccccccCcCcEEEEEcHHHHhhccccCch
Confidence 78876 89999999999876321 122 234899999999999777 9999988877655321110
Q ss_pred e----------eecCCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhhccCCCc-eeecC---CCCCEEEEE
Q 011567 342 Y----------VFSASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGL-SIASN---PESPIVFLI 404 (483)
Q Consensus 342 ~----------~fs~~~~p~~~aaa~~al~~l~~~---~~~~~~l~~~~~~l~~~L~~~~~~-~i~~~---~~~~i~~l~ 404 (483)
+ ....+.|+...+++.++++.+.+. ++++++.+++++++.+.|+++.++ ++..+ ...+++.+.
T Consensus 224 ~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 303 (362)
T 2c0r_A 224 MLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFR 303 (362)
T ss_dssp GGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEE
T ss_pred HHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEE
Confidence 0 112345777777888888876653 578899999999999999987435 66422 234567776
Q ss_pred ecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 405 l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
++. .....++++. |+++||.+.+.... +..||+++...+|++|+++++++|++++++
T Consensus 304 ~~~--------~~~~~~~~~~-L~~~gi~~~~g~~~-------~~~iRis~~~~~~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 304 LAS--------EELEKEFVKA-SEQEGFVGLKGHRS-------VGGLRASIYNAVPYESCEALVQFMEHFKRS 360 (362)
T ss_dssp CSC--------HHHHHHHHHH-HHHTTEESCBCCTT-------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCC--------cchHHHHHHH-HHHCCCeeccCCCC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 631 1224466765 55569976543211 245999999999999999999999998765
No 207
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.91 E-value=1.3e-22 Score=205.26 Aligned_cols=228 Identities=13% Similarity=0.147 Sum_probs=176.4
Q ss_pred hHHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhHh-----hhcCCeEEEecCCCHHH
Q 011567 153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL-----YLSRSTVVYFKHNDMDS 227 (483)
Q Consensus 153 ~~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~-----~~s~~~v~~~~~~d~~~ 227 (483)
.+...+|+++|+++.|.+++++++||++|+.. +.++.++||.|++....|++....+ ...|.++..++.+|+++
T Consensus 66 ~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~ 144 (400)
T 3nmy_A 66 NPTRFAYERCVAALEGGTRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAA 144 (400)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTTSHHH
T ss_pred CHHHHHHHHHHHHHhCCCCEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCCCHHH
Confidence 46778999999999999999999999999987 5668899999998888887665543 33588999999999999
Q ss_pred HHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCce
Q 011567 228 LRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI 307 (483)
Q Consensus 228 Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~ 307 (483)
+++.+++ ++++|++|++++++|.+.|+++|+++|++||+++|+||+|+.+.+.. . ..+ .+
T Consensus 145 l~~~i~~----------~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~---~--~~~-----g~ 204 (400)
T 3nmy_A 145 FKAAIRA----------DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQR---P--LSL-----GA 204 (400)
T ss_dssp HHHHCCT----------TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCC---G--GGG-----TC
T ss_pred HHHHhcc----------CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCC---h--hhc-----CC
Confidence 9887743 37899999999999999999999999999999999999998654331 1 112 34
Q ss_pred eEEEccccccccC----CCc--eeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 011567 308 DIVTAAMGHALAT----EGG--FCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILR 381 (483)
Q Consensus 308 Di~~~s~~K~lg~----~GG--~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~ 381 (483)
|+++.|++|++++ .|| ++++++++.+.++.... .++..++|+.++.++..++.+. ...++..++++.+.
T Consensus 205 div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~--~~g~~~~~~~a~~~l~~l~~l~---~r~~~~~~~a~~l~ 279 (400)
T 3nmy_A 205 DLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQN--SIGGVQGPFDSFLALRGLKTLP---LRMRAHCENALALA 279 (400)
T ss_dssp SEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHH--HHCCBCCHHHHHHHHHHHTTHH---HHHHHHHHHHHHHH
T ss_pred cEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHH--hcCCCCCHHHHHHHHHhHhHHH---HHHHHHHHHHHHHH
Confidence 8999999999984 357 45567788777654432 2344568888887777766553 46778888999999
Q ss_pred HhhccCCCceeec-----------------CCCCCEEEEEec
Q 011567 382 TGLSDIHGLSIAS-----------------NPESPIVFLILE 406 (483)
Q Consensus 382 ~~L~~~~~~~i~~-----------------~~~~~i~~l~l~ 406 (483)
+.|++.+.+.-+. ...+.++.+.++
T Consensus 280 ~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~ 321 (400)
T 3nmy_A 280 QWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLK 321 (400)
T ss_dssp HHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEET
T ss_pred HHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeC
Confidence 9998876554221 224679999984
No 208
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.91 E-value=1e-21 Score=205.46 Aligned_cols=312 Identities=15% Similarity=0.123 Sum_probs=206.3
Q ss_pred ChHHHHHHHHHHHhhhCCC--CEEEecccHHHHHhhhhhhc-------c-CCc------EEEEcCCchhHHHhHhhhcCC
Q 011567 152 TIDVHLDCEARIAKFLGTP--DSILYSYGLSTMFSAIPCFC-------K-KGD------LIVADEGVHWGIQNGLYLSRS 215 (483)
Q Consensus 152 ~~~~~~~l~~~La~~~g~e--~~i~~~sG~~a~~~ai~~~~-------~-~gd------iI~~~~~~h~s~~~g~~~s~~ 215 (483)
......++.+++++++|.+ ..+++++|++|+..++.++. + +|+ .|+++...|.++.++++..|.
T Consensus 146 ~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~ 225 (515)
T 2jis_A 146 FVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGL 225 (515)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCC
Confidence 3456777888999999975 56777899999998887763 2 465 889999999999999888777
Q ss_pred ---eEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccc
Q 011567 216 ---TVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFG 287 (483)
Q Consensus 216 ---~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g 287 (483)
+++.++.+ |+++|++.+++.... ..++++|++....+++|.+.|+++|.++|++||+++|+|++|+++
T Consensus 226 g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~----g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~ 301 (515)
T 2jis_A 226 GTDSVRVVKADERGKMVPEDLERQIGMAEAE----GAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGS 301 (515)
T ss_dssp CGGGEEEECBCTTSCBCHHHHHHHHHHHHHT----TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGG
T ss_pred CCCcEEEEecCCCCcCCHHHHHHHHHHHHhC----CCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhH
Confidence 78888764 789999988754221 113678888888889999999999999999999999999999987
Q ss_pred cccCCCCccccccCCCCCceeEEEcccccccc-CCC-ceeeccHH--HHHHHHhcCCceeec-----------------C
Q 011567 288 VLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEG-GFCTGSAR--VVDHQRLSSSGYVFS-----------------A 346 (483)
Q Consensus 288 ~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~G-G~i~~~~~--~~~~~~~~~~~~~fs-----------------~ 346 (483)
.+.... ......++ ..+|++++|++|+++ +.| |+++.+++ +++.......+|.+. .
T Consensus 302 ~~~~~~-~~~~~~g~--~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~ 378 (515)
T 2jis_A 302 VLLSQT-HRHLLDGI--QRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQC 378 (515)
T ss_dssp GGGCTT-TGGGGTTG--GGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCS
T ss_pred HHhChh-hHhhcCCC--ccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCC
Confidence 653211 00111233 255999999999997 433 66666554 555321111122111 0
Q ss_pred --CCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCC--C--CchhhHH---
Q 011567 347 --SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKST--G--SMKNDLQ--- 417 (483)
Q Consensus 347 --~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~--~--~~~~~~~--- 417 (483)
....+.+.++++++.. +...++.++..++++++.+.|++++++++..++....+.+++.+.. + ....-..
T Consensus 379 ~rr~~al~~~~~l~~lg~-~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~ 457 (515)
T 2jis_A 379 GRRVDCLKLWLMWKAQGD-QGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLS 457 (515)
T ss_dssp SCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHH
T ss_pred CCcccHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCccccccccchhHHHHHH
Confidence 0112333333333321 1224578889999999999999988999886656667777653210 0 0000011
Q ss_pred -HHHHHHHHHHHhCCEEE-EeecccccccCCCCCceEEEc-cCCCCHHHHHHHHHHHHHHHHH
Q 011567 418 -LLEDIADWALKEDGVFV-VTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 418 -~~~~i~~~~l~~~Gv~v-~~~~~~~~~~~~~~~~lRi~~-~~~~t~edi~~~~~~l~~~~~~ 477 (483)
....+...++++ |+.+ ........ +..+|+++ +..+|++||++++++|++++++
T Consensus 458 ~~~~~l~~~l~~~-G~~~~~~~~~~~~-----~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 458 KVAPVLKERMVKE-GSMMIGYQPHGTR-----GNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp THHHHHHHHHHHH-TSCEEEEEEETTE-----EEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc-CCEEEEEEEECCc-----eEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 122356665555 6543 32211100 12499999 8999999999999999987643
No 209
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.91 E-value=2.6e-22 Score=206.64 Aligned_cols=330 Identities=11% Similarity=0.019 Sum_probs=220.2
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCC-------EEEecccHHHHHhhhhhhcc-----
Q 011567 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD-------SILYSYGLSTMFSAIPCFCK----- 191 (483)
Q Consensus 124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~-------~i~~~sG~~a~~~ai~~~~~----- 191 (483)
.+|.+.+++.+++.+...+.. ...+......++.+.+++++|.+. ++++++|++|+..++.++..
T Consensus 54 ~~~~v~e~~~~a~~~~~~~~~---~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~ 130 (452)
T 2dgk_A 54 DDENVHKLMDLSINKNWIDKE---EYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKR 130 (452)
T ss_dssp CCHHHHHHHHHTTTCBTTCTT---TCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCChh---hChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 568888888888765433211 122445677888889999999752 67779999999998877643
Q ss_pred ---CC-----cEEEEcCCchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCC
Q 011567 192 ---KG-----DLIVADEGVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN 257 (483)
Q Consensus 192 ---~g-----diI~~~~~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~ 257 (483)
+| +.|++.. +|.++.+.+...|.+++.++.+ |+++|++.+.+ .+++|++....++
T Consensus 131 ~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~----------~t~~v~~~~~~n~ 199 (452)
T 2dgk_A 131 MEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDE----------NTIGVVPTFGVTY 199 (452)
T ss_dssp HHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCT----------TEEEEECBBSCTT
T ss_pred HHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCCCCCeECHHHHHHHHhh----------CCEEEEEEcCCcC
Confidence 33 5788888 9999999999999999888753 67777776643 2577877777788
Q ss_pred CCCccChHHHHHHHHHc------CcEEEEeCccccccc---cCCCCccccccCCCCCceeEEEcccccccc-C-CCceee
Q 011567 258 SGQIAPLDELIRLKEKY------RFRVFLDESNSFGVL---GRSGRGLTEHCGVPVDKIDIVTAAMGHALA-T-EGGFCT 326 (483)
Q Consensus 258 ~G~i~~L~~l~~l~~k~------~~~li~DEa~s~g~l---g~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~-~GG~i~ 326 (483)
+|.+.|+++|.++|++| |+++++|++|+.+.. ...++ +......+|+++.+.+|.+. + ..|+++
T Consensus 200 tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~hK~~~~~~~~G~~~ 274 (452)
T 2dgk_A 200 TGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIV-----WDFRLPRVKSISASGHKFGLAPLGCGWVI 274 (452)
T ss_dssp TCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC-----CSTTSTTEEEEEEETTTTTCCCSSCEEEE
T ss_pred CcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccch-----hhcCCCCCcEEEECcccccCCCCCeEEEE
Confidence 99999999999999996 999999999987653 22111 11222467999999999763 2 237776
Q ss_pred cc-HHHH-HHHHhcCCce------ee--cCCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHhhccCCCceeec
Q 011567 327 GS-ARVV-DHQRLSSSGY------VF--SASLPPYLASAAITAIDVLE--ENPDLITKLKKNTAILRTGLSDIHGLSIAS 394 (483)
Q Consensus 327 ~~-~~~~-~~~~~~~~~~------~f--s~~~~p~~~aaa~~al~~l~--~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~ 394 (483)
.+ ++.. +.+... ..| .+ ..+.+...+.+..++++.+. ...+..++..++++++.+.|++++++++..
T Consensus 275 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 353 (452)
T 2dgk_A 275 WRDEEALPQELVFN-VDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFIC 353 (452)
T ss_dssp ESSGGGSCGGGCEE-ECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEE
T ss_pred EcCHHHHHHHhccC-ccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEec
Confidence 64 3332 333211 111 11 11222212222333444332 224578888999999999999987788764
Q ss_pred C----CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHH
Q 011567 395 N----PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACES 470 (483)
Q Consensus 395 ~----~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~ 470 (483)
+ +..+++.+++.+.... .....++.+.+. ++|+.+.....+..-. ....+|+++...+|++|++++++.
T Consensus 354 ~~~~~~~~~~v~f~~~~~~~~----~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~--~~~~lRis~~~~~t~e~id~li~~ 426 (452)
T 2dgk_A 354 TGRPDEGIPAVCFKLKDGEDP----GYTLYDLSERLR-LRGWQVPAFTLGGEAT--DIVVMRIMCRRGFEMDFAELLLED 426 (452)
T ss_dssp ECCTTTBSSEEEEEECTTCCC----SCCHHHHHHHHH-HTTCBCCEEECSTTCT--TCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCCCCCCeEEEEEEecCcccc----cCCHHHHHHHHH-hcCCeeeeeeCCcccC--CeEEEEEEecCCCCHHHHHHHHHH
Confidence 3 4568888888532100 001235666544 4688765322221100 013499999999999999999999
Q ss_pred HHHHHHHHHh
Q 011567 471 LKRISAVVLR 480 (483)
Q Consensus 471 l~~~~~~~~~ 480 (483)
|+++++.+..
T Consensus 427 l~~~~~~~~~ 436 (452)
T 2dgk_A 427 YKASLKYLSD 436 (452)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999877643
No 210
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.91 E-value=1.2e-21 Score=204.59 Aligned_cols=313 Identities=15% Similarity=0.151 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHhhhCCC----CEEEecccHHHHHhhhhhhcc--------CC-----c-EEEEcCCchhHHHhHhhhcCC
Q 011567 154 DVHLDCEARIAKFLGTP----DSILYSYGLSTMFSAIPCFCK--------KG-----D-LIVADEGVHWGIQNGLYLSRS 215 (483)
Q Consensus 154 ~~~~~l~~~La~~~g~e----~~i~~~sG~~a~~~ai~~~~~--------~g-----d-iI~~~~~~h~s~~~g~~~s~~ 215 (483)
.+..++.+++++++|.+ ..+++++|++|+..++.++.. +| + .|+++...|.++.+++...+.
T Consensus 132 ~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~ 211 (504)
T 2okj_A 132 LMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGF 211 (504)
T ss_dssp HHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCC
Confidence 45566667789999965 456778999999998877642 45 6 788899999999999887765
Q ss_pred ---eEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccc
Q 011567 216 ---TVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFG 287 (483)
Q Consensus 216 ---~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g 287 (483)
+++.++.+ |+++|++.+++...+ ...+++|++....+++|.+.|+++|.++|++||+++++|++|+++
T Consensus 212 g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~----g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~ 287 (504)
T 2okj_A 212 GTDNVILIKCNERGKIIPADFEAKILEAKQK----GYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGG 287 (504)
T ss_dssp CGGGEEEECBCTTSCBCHHHHHHHHHHHHHT----TCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGG
T ss_pred CcccEEEEecCCCCCCCHHHHHHHHHHHHHC----CCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhH
Confidence 78888765 889999988754321 113678888888888999999999999999999999999999987
Q ss_pred cccCCCCccccccCCCCCceeEEEcccccccc-CC-CceeeccH-HHHHHHHhcCCceeecCC-----------------
Q 011567 288 VLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TE-GGFCTGSA-RVVDHQRLSSSGYVFSAS----------------- 347 (483)
Q Consensus 288 ~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~-GG~i~~~~-~~~~~~~~~~~~~~fs~~----------------- 347 (483)
.+..... -....++ ..+|+++.+.+|+++ +. .|+++.++ ++++.......+|.++..
T Consensus 288 ~~~~~~~-~~~~~g~--~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 364 (504)
T 2okj_A 288 LLMSRKH-RHKLNGI--ERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCG 364 (504)
T ss_dssp GGGCTTT-GGGGTTG--GGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSS
T ss_pred HHhCHhh-HhhcCCc--ccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCC
Confidence 6532110 0111223 246999999999997 33 36666554 465543222223332111
Q ss_pred --CcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeec--CCCCCEEEEEecCCC--C---Cch---hh
Q 011567 348 --LPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIAS--NPESPIVFLILEKST--G---SMK---ND 415 (483)
Q Consensus 348 --~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~--~~~~~i~~l~l~~~~--~---~~~---~~ 415 (483)
..++.+.++++++.. +...++.++..++++++.+.|++++++++.. .+...++.+++.+.. + ... ..
T Consensus 365 rr~~~l~~~a~l~~lg~-~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~ 443 (504)
T 2okj_A 365 RHVDIFKFWLMWKAKGT-VGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKL 443 (504)
T ss_dssp CBCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHH
T ss_pred CCccHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhhHHHH
Confidence 124444444444431 2234578889999999999999988998875 356666777653211 0 000 00
Q ss_pred HHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc-CCCCHHHHHHHHHHHHHHHHHHH
Q 011567 416 LQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS-AAHSEADLVKACESLKRISAVVL 479 (483)
Q Consensus 416 ~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~-~~~t~edi~~~~~~l~~~~~~~~ 479 (483)
.....++.+.+++++.+++........ +..+|+++. ..+|++||++++++|++++++++
T Consensus 444 ~~~~~~l~~~L~~~G~~~~~~~~~~~~-----~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~~ 503 (504)
T 2okj_A 444 HKVAPKIKALMMESGTTMVGYQPQGDK-----ANFFRMVISNPAATQSDIDFLIEEIERLGQDLH 503 (504)
T ss_dssp TTHHHHHHHHHHHHTSCEEEEEEETTE-----EEEEEECCCCTTCCHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhCCcEEEEeeEECCc-----eEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 112346777766663345543322110 124999995 88999999999999999876653
No 211
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.90 E-value=6.6e-23 Score=209.14 Aligned_cols=344 Identities=12% Similarity=-0.012 Sum_probs=219.0
Q ss_pred EEEeecCCCC--CCCCChHHHHHHHHHHH-hcCCCCCCCCCcccChHHHHHHHHHHHhhhCCC-CEEEe-cccHHHH--H
Q 011567 111 VVNFASANYL--GLIGHEKLLESCTSALE-KYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP-DSILY-SYGLSTM--F 183 (483)
Q Consensus 111 ~id~~s~~~l--G~~~~p~i~~a~~~~l~-~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e-~~i~~-~sG~~a~--~ 183 (483)
+|||+.+.+- .+..++.+.+++.+++. ..+.. ...|+...-..+|++.+|++++.+ +.|++ +++++++ .
T Consensus 34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~ 109 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVD----CRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFD 109 (422)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCB----TTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHH
T ss_pred eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchh----hhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHH
Confidence 6899887441 02233567666654421 11100 012333333578999999999864 45555 5555666 5
Q ss_pred hhhhhhccC------------CcEEEEcCCchhHHHhHhhhcCCeEEEecCC----CHHHHHHHHHHhhhhhhhccCccE
Q 011567 184 SAIPCFCKK------------GDLIVADEGVHWGIQNGLYLSRSTVVYFKHN----DMDSLRNTLERVTADNKRAKKLRR 247 (483)
Q Consensus 184 ~ai~~~~~~------------gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~----d~~~Le~~l~~~~~~~~~~~~~~~ 247 (483)
.+++++..+ +|.|+++.++|..+...++..|.+++.++.+ |+++|++.+++. +++
T Consensus 110 ~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~---------~~~ 180 (422)
T 3d6k_A 110 LISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDEGPDMGVVRELVKDP---------QVK 180 (422)
T ss_dssp HHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETTEECHHHHHHHHTST---------TEE
T ss_pred HHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCCCCCCHHHHHHHHhcC---------CCe
Confidence 666777655 3478888888888888888889998887753 678888777431 256
Q ss_pred EEE-EecccCCCCCccCh---HHHHHHHH-HcCcEEEEeCccccccccCCCCccccccC----CCCCceeEEEccccccc
Q 011567 248 YIV-VEAVYQNSGQIAPL---DELIRLKE-KYRFRVFLDESNSFGVLGRSGRGLTEHCG----VPVDKIDIVTAAMGHAL 318 (483)
Q Consensus 248 ~iv-~e~v~~~~G~i~~L---~~l~~l~~-k~~~~li~DEa~s~g~lg~~G~g~~~~~~----v~~~~~Di~~~s~~K~l 318 (483)
+|+ +..+++++|.+.|. ++|+++|+ +||+++|+||+|+.+.++..|........ ....+.+++++|+||+.
T Consensus 181 ~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 260 (422)
T 3d6k_A 181 GMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKIT 260 (422)
T ss_dssp EEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTS
T ss_pred EEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhc
Confidence 666 56678889999995 48888888 99999999999985334433322211111 11234578899999984
Q ss_pred cC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHHhhcc----CC
Q 011567 319 AT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL----EENPDLITKLKKNTAILRTGLSD----IH 388 (483)
Q Consensus 319 g~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l----~~~~~~~~~l~~~~~~l~~~L~~----~~ 388 (483)
++ ..||+++++++++.++.....+.+ +.+++..+++.++++.. +...+.++.++++.+.+.+.|.+ +.
T Consensus 261 ~~GlriG~~~~~~~l~~~l~~~~~~~~~--~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~ 338 (422)
T 3d6k_A 261 HAGSGVSFFASSKENIEWYASHANVRGI--GPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYG 338 (422)
T ss_dssp CTTSSCEEEECCHHHHHHHHHHHHHHCS--CCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CcccceEEEEeCHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 32 239999999998887654333333 34677777776666431 11123455566666666666643 32
Q ss_pred CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEe-ecccccccCCCCCceEEEccCCCCHHHHHHH
Q 011567 389 GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVT-SKRSMLDKCRLPVGIRLFVSAAHSEADLVKA 467 (483)
Q Consensus 389 ~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~-~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~ 467 (483)
++.+..+..+.++++.++.. + ...+.. .++++||.+.+ ...........+..+||+++. +|+++++++
T Consensus 339 ~~~~~~p~~g~~~~~~~~~~------~---~~~~~~-~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~~~e~i~~~ 407 (422)
T 3d6k_A 339 VAKWTSPTGGYFISVDVVPG------T---ASRVVE-LAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-PPVAELEVA 407 (422)
T ss_dssp CEEECCCSBSSCEEEEESTT------C---HHHHHH-HHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHHHH
T ss_pred ceEEeCCCcceEEEEECCCC------C---HHHHHH-HHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-CCHHHHHHH
Confidence 35555455677888888531 1 123444 45567999988 332211000112459999987 899999999
Q ss_pred HHHHHHHHHHHHh
Q 011567 468 CESLKRISAVVLR 480 (483)
Q Consensus 468 ~~~l~~~~~~~~~ 480 (483)
+++|+++++++..
T Consensus 408 ~~~l~~~l~~~~~ 420 (422)
T 3d6k_A 408 MDGFATCVLMAAL 420 (422)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987754
No 212
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.90 E-value=1.3e-22 Score=205.23 Aligned_cols=240 Identities=13% Similarity=0.087 Sum_probs=180.6
Q ss_pred HHHHHHHHHHhhhCCCCEEE---ecccHHHHHhhhhhhccCCcEEEEcC-CchhHHHh----------HhhhcCCeEEEe
Q 011567 155 VHLDCEARIAKFLGTPDSIL---YSYGLSTMFSAIPCFCKKGDLIVADE-GVHWGIQN----------GLYLSRSTVVYF 220 (483)
Q Consensus 155 ~~~~l~~~La~~~g~e~~i~---~~sG~~a~~~ai~~~~~~gdiI~~~~-~~h~s~~~----------g~~~s~~~v~~~ 220 (483)
-+.+|++.+|+++|.+.+++ ++||++|+..++.++.++||.|+++. +.|..+.. .++..|.+++.+
T Consensus 60 ~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v 139 (409)
T 3jzl_A 60 GRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSV 139 (409)
T ss_dssp HHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEEC
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEe
Confidence 47889999999999999998 89999999999999999999999987 77777653 445668888888
Q ss_pred cC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEec----ccCCCCCccChHHHHHHHHH--cCcEEEEeCccccccc
Q 011567 221 KH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVEA----VYQNSGQIAPLDELIRLKEK--YRFRVFLDESNSFGVL 289 (483)
Q Consensus 221 ~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~----v~~~~G~i~~L~~l~~l~~k--~~~~li~DEa~s~g~l 289 (483)
+. .|++++++.++. ++++|++++ +++++|.+.|+++|+++|++ ||+++++||+|+.++.
T Consensus 140 ~~~~~g~~d~e~l~~ai~~----------~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~ 209 (409)
T 3jzl_A 140 PLLENGDVDFPRIAKKMTP----------KTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVE 209 (409)
T ss_dssp CCCTTSCCCHHHHHHHCCT----------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTS
T ss_pred CCCCCCCcCHHHHHHhccC----------CCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccc
Confidence 77 578888776642 378999999 99999999999999999999 9999999999987653
Q ss_pred cCCCCccccccCCCCCceeEEEccccccccC----CCceeeccHHHHHHHHhc--CCceeecCCCcHHHHHHHHHHHHHH
Q 011567 290 GRSGRGLTEHCGVPVDKIDIVTAAMGHALAT----EGGFCTGSARVVDHQRLS--SSGYVFSASLPPYLASAAITAIDVL 363 (483)
Q Consensus 290 g~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~----~GG~i~~~~~~~~~~~~~--~~~~~fs~~~~p~~~aaa~~al~~l 363 (483)
+. .. .. ..+|++++|++|++|+ .|||+++++++++.++.. ..+..+..+..+..+.++...++.+
T Consensus 210 ~~--~p----~~---~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~ 280 (409)
T 3jzl_A 210 YQ--EP----PE---VGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLA 280 (409)
T ss_dssp SC--CS----GG---GTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH
T ss_pred cC--Cc----cc---cCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccccccccccHHHHHHHHHHHhhH
Confidence 32 11 11 2348999999999973 479999999999988652 2222222222221123344444433
Q ss_pred hcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCC-----EEEEEecCCCCCchhhHHHHHHHHHHH
Q 011567 364 EENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP-----IVFLILEKSTGSMKNDLQLLEDIADWA 426 (483)
Q Consensus 364 ~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~-----i~~l~l~~~~~~~~~~~~~~~~i~~~~ 426 (483)
+..+++..+++.++.+.|+++ |+++.+. .++ ++.+.++ +.+.+.++++.+
T Consensus 281 ---~~r~~~~~~~a~~la~~L~~~-g~~v~p~-~~~~~~~~i~~i~l~--------~~~~~~~~~~~L 335 (409)
T 3jzl_A 281 ---PHVTAQAIKGARFTAAMLAEF-GVEADPV-WDAPRTDLIQSVSFH--------NKEKMVAFAQAI 335 (409)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHT-TCEEESC-TTSCCSSSCCEEECS--------CHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHhC-CCcccCC-CCCCCccEEEEEEeC--------CHHHHHHHHHHH
Confidence 457888999999999999987 7777543 444 8888884 234456777754
No 213
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.90 E-value=3.3e-22 Score=202.97 Aligned_cols=242 Identities=13% Similarity=0.123 Sum_probs=183.4
Q ss_pred HHHHHHHHHHhhhCCCCEEE---ecccHHHHHhhhhhhccCCcEEEEcC-CchhHHH-----------hHhhhcCCeEEE
Q 011567 155 VHLDCEARIAKFLGTPDSIL---YSYGLSTMFSAIPCFCKKGDLIVADE-GVHWGIQ-----------NGLYLSRSTVVY 219 (483)
Q Consensus 155 ~~~~l~~~La~~~g~e~~i~---~~sG~~a~~~ai~~~~~~gdiI~~~~-~~h~s~~-----------~g~~~s~~~v~~ 219 (483)
-..+||+++|+++|.+.+++ ++||++|+..++.++.++||.|+++. +.|.... ..+...|.+++.
T Consensus 75 g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~ 154 (427)
T 3hvy_A 75 GRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKM 154 (427)
T ss_dssp HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEE
T ss_pred hHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEE
Confidence 47899999999999999998 89999999999999999999999987 6666544 345557888888
Q ss_pred ecC----CCHHHHHHHHHHhhhhhhhccCccEEEEEec----ccCCCCCccChHHHHHHHHH--cCcEEEEeCccccccc
Q 011567 220 FKH----NDMDSLRNTLERVTADNKRAKKLRRYIVVEA----VYQNSGQIAPLDELIRLKEK--YRFRVFLDESNSFGVL 289 (483)
Q Consensus 220 ~~~----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~----v~~~~G~i~~L~~l~~l~~k--~~~~li~DEa~s~g~l 289 (483)
++. .|++++++.+++. . ++++|++++ +++++|.+.|+++|+++|++ ||+++++|++|+.+++
T Consensus 155 v~~~~~~~d~e~l~~~i~~~-~-------~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~ 226 (427)
T 3hvy_A 155 VDLKDGKVDINTVKEELKKD-D-------SIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVE 226 (427)
T ss_dssp CCCBTTBCCHHHHHHHHHHC-T-------TEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTS
T ss_pred ecCCCCCcCHHHHHHHhhCC-C-------CCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCcccccc
Confidence 887 6899999888641 1 378999999 88999999999999999999 8999999999987654
Q ss_pred cCCCCccccccCCCCCceeEEEccccccccC----CCceeeccHHHHHHHHhc--CCceeecCCCcHHHHHHHHHHHHHH
Q 011567 290 GRSGRGLTEHCGVPVDKIDIVTAAMGHALAT----EGGFCTGSARVVDHQRLS--SSGYVFSASLPPYLASAAITAIDVL 363 (483)
Q Consensus 290 g~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~----~GG~i~~~~~~~~~~~~~--~~~~~fs~~~~p~~~aaa~~al~~l 363 (483)
+. ... . ..+|++++|++|++|+ .||++++++++++.++.. ..+..++.+.++..+..+...++.+
T Consensus 227 ~~--~p~----~---~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~ 297 (427)
T 3hvy_A 227 EK--EPT----D---VGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMA 297 (427)
T ss_dssp SS--CGG----G---GTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH
T ss_pred CC--CCc----c---cCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHH
Confidence 32 111 1 2348999999999974 579999999999988762 2333222222222234444444433
Q ss_pred hcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCC-----EEEEEecCCCCCchhhHHHHHHHHHHH
Q 011567 364 EENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP-----IVFLILEKSTGSMKNDLQLLEDIADWA 426 (483)
Q Consensus 364 ~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~-----i~~l~l~~~~~~~~~~~~~~~~i~~~~ 426 (483)
+.+.++..+++.++.+.|+++ |+.+.+. .++ ++.+.++ +.+.+.++++.+
T Consensus 298 ---~~r~~~~~~~a~~la~~L~~~-g~~V~p~-~~~~~~~li~~~~l~--------~~~~~~~f~~~l 352 (427)
T 3hvy_A 298 ---PHVTIEAVKGAVFCARIMELA-GFDVLPK-YNDKRTDIIQAIKFN--------DEKKLIDFIKGI 352 (427)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHT-TCEEESC-TTSCCSSSEEEEECS--------SHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHhC-CCeecCC-CCCCCceEEEEEeCC--------CHHHHHHHHHHh
Confidence 457888999999999999987 7777544 455 8888884 233455677653
No 214
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.90 E-value=6.4e-23 Score=220.51 Aligned_cols=315 Identities=16% Similarity=0.121 Sum_probs=207.6
Q ss_pred ccChHHHHHHHHHHHhhhCCCCEEEecccH-HHHHhhhhhhccCCcEEEEcCCchhHHHhH-hhhcCCeEEEecC-----
Q 011567 150 YGTIDVHLDCEARIAKFLGTPDSILYSYGL-STMFSAIPCFCKKGDLIVADEGVHWGIQNG-LYLSRSTVVYFKH----- 222 (483)
Q Consensus 150 ~g~~~~~~~l~~~La~~~g~e~~i~~~sG~-~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g-~~~s~~~v~~~~~----- 222 (483)
+++...+.++++.+|+++|.+.++++++|+ +++..++.+++++||.|++++..|.++..+ +.++|.+++.++.
T Consensus 169 ~~~~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~~~~ 248 (730)
T 1c4k_A 169 LIHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPY 248 (730)
T ss_dssp TTTBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTT
T ss_pred cCChHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 345567899999999999999988887776 889999999999999999999999999999 8999998876642
Q ss_pred -----CCHHHH-----HHHHHHhhhhhhhccCc-cEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCcccccc-cc
Q 011567 223 -----NDMDSL-----RNTLERVTADNKRAKKL-RRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGV-LG 290 (483)
Q Consensus 223 -----~d~~~L-----e~~l~~~~~~~~~~~~~-~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~-lg 290 (483)
-|+++| ++.+++...+....+.+ +.++++++. .+|.+.|+++|+++|++||+++++||+|+.+. ++
T Consensus 249 ~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn--~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~ 326 (730)
T 1c4k_A 249 GFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT--YDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFI 326 (730)
T ss_dssp CCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC--TTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSS
T ss_pred CccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCC--CCCeecCHHHHHHHHHHcCCeEEEEcccccccccC
Confidence 177888 55554320000001112 344555553 57999999999999999999999999997542 33
Q ss_pred CCCCccc----cccCCCCCceeEEEccccccccCC--CceeeccHH-------HHH--HHHhcCCceeecCCCcHHHHHH
Q 011567 291 RSGRGLT----EHCGVPVDKIDIVTAAMGHALATE--GGFCTGSAR-------VVD--HQRLSSSGYVFSASLPPYLASA 355 (483)
Q Consensus 291 ~~G~g~~----~~~~v~~~~~Di~~~s~~K~lg~~--GG~i~~~~~-------~~~--~~~~~~~~~~fs~~~~p~~~aa 355 (483)
..++|.. +..+.+ +..+++++|+||++++. ||++..+++ .++ .+... ....++++.++..+++
T Consensus 327 ~~~~g~~~l~~~~~g~D-~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~-~~~~~stsp~~~~iaa 404 (730)
T 1c4k_A 327 PMMRNSSPLLIDDLGPE-DPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNS-FNLFMSTSPFYPMYAA 404 (730)
T ss_dssp GGGGGGCTTSCCCCCTT-SCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHH-HHHHSCSSCCHHHHHH
T ss_pred cccCCcCcccccccCCC-CCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccCHHHHHHH-HHHhCCCCCcHHHHHH
Confidence 3222111 112332 12238999999999743 466633222 111 11111 1123345667777777
Q ss_pred HHHHHHHHhc--CcHHHHHHHHHHHHHHHhhcc-CCCceeecCC------------------------------------
Q 011567 356 AITAIDVLEE--NPDLITKLKKNTAILRTGLSD-IHGLSIASNP------------------------------------ 396 (483)
Q Consensus 356 a~~al~~l~~--~~~~~~~l~~~~~~l~~~L~~-~~~~~i~~~~------------------------------------ 396 (483)
..++++.+.. ..+.++++.++.+++++.|++ ++|+.+..+.
T Consensus 405 l~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 484 (730)
T 1c4k_A 405 LDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGY 484 (730)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTC
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhcccccc
Confidence 7778887764 356788999999999999988 6788765321
Q ss_pred -CC-----CE-EEEEecC---CCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHH
Q 011567 397 -ES-----PI-VFLILEK---STGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVK 466 (483)
Q Consensus 397 -~~-----~i-~~l~l~~---~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~ 466 (483)
.+ |. +.+..+. ..+...........+.+. |.++||.+.... ...+|++++..+|++++++
T Consensus 485 ~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~-L~e~GI~v~~~~---------~~~ir~~~s~g~t~e~i~~ 554 (730)
T 1c4k_A 485 GDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANY-LRDHGIIPEKSD---------LNSILFLMTPAETPAKMNN 554 (730)
T ss_dssp CTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHH-HHHTTCCCSEEC---------SSEEEEECCTTCCHHHHHH
T ss_pred CCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHH-HHHCCcEEEECC---------CCeEEEEeCCCCCHHHHHH
Confidence 11 11 3333321 000000000112345655 445599886542 2449999999999999999
Q ss_pred HHHHHHHHHHHH
Q 011567 467 ACESLKRISAVV 478 (483)
Q Consensus 467 ~~~~l~~~~~~~ 478 (483)
++++|+++.+..
T Consensus 555 Ll~aL~~i~~~~ 566 (730)
T 1c4k_A 555 LITQLLQLQRLI 566 (730)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999987654
No 215
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.90 E-value=1e-21 Score=197.26 Aligned_cols=318 Identities=13% Similarity=0.121 Sum_probs=214.5
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHH-HhhhC-CCCEEEecccHHHHHhhhhhh-ccCCcEEEEcC
Q 011567 124 GHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARI-AKFLG-TPDSILYSYGLSTMFSAIPCF-CKKGDLIVADE 200 (483)
Q Consensus 124 ~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~L-a~~~g-~e~~i~~~sG~~a~~~ai~~~-~~~gdiI~~~~ 200 (483)
..+++.+++.+.++.. . +++..+...+|++++ |+++| .++++++++|++|+..++.++ .++||.|+++.
T Consensus 14 ~~~~i~~a~~~~~~~~-~-------~~~~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~ 85 (377)
T 3ju7_A 14 PVIEYLDELKEIDASH-I-------YTNYGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRKKGKYALMPS 85 (377)
T ss_dssp CGGGGHHHHHHHHHHT-C-------CSSSCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEES
T ss_pred CcHHHHHHHHHHHHcC-C-------cccCCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECC
Confidence 4578899999998862 2 111236678999999 99999 888999999999999999988 89999999999
Q ss_pred CchhHHHhHhhhcCCeEEEecCC------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHc
Q 011567 201 GVHWGIQNGLYLSRSTVVYFKHN------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKY 274 (483)
Q Consensus 201 ~~h~s~~~g~~~s~~~v~~~~~~------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~ 274 (483)
..|.++...+...|.+++.++.+ |++++++.+..... ++++|+. .+++|.+.|+++|.++|+ |
T Consensus 86 ~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~-------~tk~v~~---~~~~G~~~~~~~i~~la~-~ 154 (377)
T 3ju7_A 86 FTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKE-------EVAIVVP---YATFGSWMNLEEYEELEK-K 154 (377)
T ss_dssp SSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGG-------GEEEECC---BCGGGBCCCCHHHHHHHH-T
T ss_pred CCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCC-------CceEEEE---ECCCCCccCHHHHHHHHh-c
Confidence 99999999999999998887643 78888887743211 1566663 334699999999999999 9
Q ss_pred CcEEEEeCccccccccCCCCccccccCCCCCceeEEEcccccccc-CCCceeec-cHHHHHHHHhcC-Cc---------e
Q 011567 275 RFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTG-SARVVDHQRLSS-SG---------Y 342 (483)
Q Consensus 275 ~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg-~~GG~i~~-~~~~~~~~~~~~-~~---------~ 342 (483)
|+++|+|++|++|.... ++ ..|-...++++...+.+|.++ +.||+++. ++++.+.++... .+ .
T Consensus 155 ~~~vi~D~a~a~g~~~~-~~----~~g~~~~d~~~~S~~~~K~l~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~ 229 (377)
T 3ju7_A 155 GVPVVVDAAPGFGLMNG-GM----HYGQDFSGMIIYSFHATKPFGIGEGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMM 229 (377)
T ss_dssp TCCBEEECTTCTTCEET-TE----ETTTTCSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSS
T ss_pred CCEEEEECCCccCCeEC-CE----eccCCCCcEEEEECCCCCcCCCCCcEEEEECCHHHHHHHHHHHhcCCCCCCceeec
Confidence 99999999999875421 11 111001223444334479997 44577654 566666554321 11 1
Q ss_pred eecCCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCc--eeecCCC---C-CEEEEEecCCCCCchhhH
Q 011567 343 VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGL--SIASNPE---S-PIVFLILEKSTGSMKNDL 416 (483)
Q Consensus 343 ~fs~~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~--~i~~~~~---~-~i~~l~l~~~~~~~~~~~ 416 (483)
.+...++++.++.+...++.++ +..++.+++.+++.+.|++++++ .+..... . .++.+.+.+..
T Consensus 230 g~~~~~~~~~aa~~~~~l~~l~---~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 299 (377)
T 3ju7_A 230 GFNCKMSEYAAAIGIATMKKWD---DKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEV------- 299 (377)
T ss_dssp CCBCCCCHHHHHHHHHHHHTHH---HHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTS-------
T ss_pred cccCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChh-------
Confidence 2334578888888877776553 46778888888899988887543 2221111 1 13344443210
Q ss_pred HHHHHHHHHHHHhCCEEEEeeccccccc------C---CCC-------CceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 417 QLLEDIADWALKEDGVFVVTSKRSMLDK------C---RLP-------VGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 417 ~~~~~i~~~~l~~~Gv~v~~~~~~~~~~------~---~~~-------~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
...++.+. |+++||.++....+.+.. . ..| ..||+.++..+|++|+++++++|++++..
T Consensus 300 -~~~~l~~~-L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 300 -RNKQVIED-LKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp -CHHHHHHH-HHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred -hHHHHHHH-HHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 02245554 666799887654222111 0 111 13999999999999999999999887653
No 216
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.90 E-value=5e-21 Score=198.85 Aligned_cols=304 Identities=13% Similarity=0.076 Sum_probs=201.6
Q ss_pred HHHHHHHHHHHhhhCCCC-----------EEEecccHHHHHhhhhhhccC---------C---------c-EEEEcCCch
Q 011567 154 DVHLDCEARIAKFLGTPD-----------SILYSYGLSTMFSAIPCFCKK---------G---------D-LIVADEGVH 203 (483)
Q Consensus 154 ~~~~~l~~~La~~~g~e~-----------~i~~~sG~~a~~~ai~~~~~~---------g---------d-iI~~~~~~h 203 (483)
.+..++.+++++++|.+. .+++++|++|+..++.+...+ | + +|+++...|
T Consensus 113 ~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h 192 (486)
T 1js3_A 113 ELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAH 192 (486)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCC
T ss_pred HHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCc
Confidence 445556667788888763 578899999998887654311 2 3 478899999
Q ss_pred hHHHhHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEE
Q 011567 204 WGIQNGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRV 278 (483)
Q Consensus 204 ~s~~~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~l 278 (483)
.++.++++..|.+++.++.+ |+++|++.+++.... .....+|++....+++|.+.|+++|.++|++||+++
T Consensus 193 ~s~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~----g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~l 268 (486)
T 1js3_A 193 SSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAA----GLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWL 268 (486)
T ss_dssp HHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHT----TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhC----CCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEE
Confidence 99999999999999888764 789999998764321 111246666667788999999999999999999999
Q ss_pred EEeCcccccccc-CCCCccccccCCCCCceeEEEccccccccCC--Cceeecc-HHH-HHHHHhcCCceeec--------
Q 011567 279 FLDESNSFGVLG-RSGRGLTEHCGVPVDKIDIVTAAMGHALATE--GGFCTGS-ARV-VDHQRLSSSGYVFS-------- 345 (483)
Q Consensus 279 i~DEa~s~g~lg-~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~--GG~i~~~-~~~-~~~~~~~~~~~~fs-------- 345 (483)
++|++|+++.+- +..++. ..++ ..+|+++++.+|+++.+ .|+++.+ +.. .+.+.. ...|.+.
T Consensus 269 hvD~a~g~~~~~~~~~~~~--~~g~--~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~-~~~yl~~~~~~~~~~ 343 (486)
T 1js3_A 269 HVDAAYAGSAFICPEFRHL--LNGV--EFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKL-DPVYLKHSHQGSGLI 343 (486)
T ss_dssp EEECTTGGGGGGSTTTGGG--GTTG--GGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC-------------CCSC
T ss_pred EEehhhHHHHHHCHHHHHH--hcCc--cccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcC-CchhhCCCcccccCC
Confidence 999999877642 222222 1233 34588889999999732 3666554 433 333211 0111110
Q ss_pred ---------C--CCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchh
Q 011567 346 ---------A--SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKN 414 (483)
Q Consensus 346 ---------~--~~~p~~~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~ 414 (483)
. ....+.+.+++..+. .+...++.++..++++++.+.|++++++++..++..+++.+++...
T Consensus 344 ~~~~~~~~~~~rr~~~~~~~~al~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~------ 416 (486)
T 1js3_A 344 TDYRHWQLPLGRRFRSLKMWFVFRMYG-VKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGS------ 416 (486)
T ss_dssp CCGGGSSSCSCCCCTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSC------
T ss_pred CCccccCCCCCCchhHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEEEecCh------
Confidence 1 112222223333221 1223457888889999999999988899987666778888887421
Q ss_pred hHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEc-cCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567 415 DLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFV-SAAHSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 415 ~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~-~~~~t~edi~~~~~~l~~~~~~~~~ 480 (483)
.....++.+.+.+++.+++.+..+.. ...+|+++ +...|++||+++++.|+++++++..
T Consensus 417 -~~~~~~l~~~L~~~g~~~~~~~~~~~------~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~~ 476 (486)
T 1js3_A 417 -DGLNEALLERINSARKIHLVPCRLRG------QFVLRFAICSRKVESGHVRLAWEHIRGLAAELLA 476 (486)
T ss_dssp -HHHHHHHHHHHHHHTSCBCEEEEETT------EEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHhcCCEEEEEEEECC------EEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 12235677766665334334332211 23499996 5567999999999999999887754
No 217
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.90 E-value=3.9e-22 Score=202.40 Aligned_cols=242 Identities=9% Similarity=0.102 Sum_probs=181.9
Q ss_pred HHHHHHHHHHhhhCCCCEEE---ecccHHHHHhhhhhhccCCcEEEEcC-CchhHHH-----------hHhhhcCCeEEE
Q 011567 155 VHLDCEARIAKFLGTPDSIL---YSYGLSTMFSAIPCFCKKGDLIVADE-GVHWGIQ-----------NGLYLSRSTVVY 219 (483)
Q Consensus 155 ~~~~l~~~La~~~g~e~~i~---~~sG~~a~~~ai~~~~~~gdiI~~~~-~~h~s~~-----------~g~~~s~~~v~~ 219 (483)
-+.+||+.+|+++|.+.+++ ++||++|+..++.++.++||.|+++. +.|..+. ..+...|.+++.
T Consensus 74 ~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~ 153 (427)
T 3i16_A 74 GRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQ 153 (427)
T ss_dssp HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEE
T ss_pred HHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEE
Confidence 47899999999999999988 89999999999999999999999987 7776554 344556888888
Q ss_pred ecC-----CCHHHHHHHHHHhhhhhhhccCccEEEEEec----ccCCCCCccChHHHHHHHHH--cCcEEEEeCcccccc
Q 011567 220 FKH-----NDMDSLRNTLERVTADNKRAKKLRRYIVVEA----VYQNSGQIAPLDELIRLKEK--YRFRVFLDESNSFGV 288 (483)
Q Consensus 220 ~~~-----~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~----v~~~~G~i~~L~~l~~l~~k--~~~~li~DEa~s~g~ 288 (483)
++. .|++++++.+++. . ++++|++++ +++++|.+.|+++|+++|++ ||+++++||+|+.++
T Consensus 154 v~~~~~g~~D~e~l~~~l~~~-~-------~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~ 225 (427)
T 3i16_A 154 VDLKEDGKPNLEEIEKVLKED-E-------SITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFM 225 (427)
T ss_dssp CCCCTTSSCCHHHHHHHHHTC-T-------TEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTS
T ss_pred ecCccCCCcCHHHHHHHhhCC-C-------CCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCcccc
Confidence 886 5888998888631 1 378999999 89999999999999999999 999999999998765
Q ss_pred ccCCCCccccccCCCCCceeEEEccccccccC----CCceeeccHHHHHHHHhcCCceeecCCCcH-HH-HHHHHHHHHH
Q 011567 289 LGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT----EGGFCTGSARVVDHQRLSSSGYVFSASLPP-YL-ASAAITAIDV 362 (483)
Q Consensus 289 lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~----~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p-~~-~aaa~~al~~ 362 (483)
++. ... . ..+|++++|++|++|+ .|||+++++++++.++.......++..+.| +. +..+...++.
T Consensus 226 ~~~--~p~--~-----~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~ 296 (427)
T 3i16_A 226 DTK--EPT--D-----VGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFL 296 (427)
T ss_dssp SSS--CGG--G-----GTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHH
T ss_pred ccC--Ccc--c-----cCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccHHHHHHHHHHHHH
Confidence 332 111 1 2348999999999974 579999999999988762111112221222 22 3333334433
Q ss_pred HhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCC-----EEEEEecCCCCCchhhHHHHHHHHHHH
Q 011567 363 LEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP-----IVFLILEKSTGSMKNDLQLLEDIADWA 426 (483)
Q Consensus 363 l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~-----i~~l~l~~~~~~~~~~~~~~~~i~~~~ 426 (483)
+ +.+.++..+++.++.+.|+++ ++.+.+. .++ ++.+.++ +.+.+.++++.+
T Consensus 297 ~---~~r~~~~~~~a~~la~~L~~~-g~~V~p~-~~~~~~~~i~~i~l~--------~~~~~~~f~~~l 352 (427)
T 3i16_A 297 A---PHISMEALKGAILCSRIMELA-GFEVMPK-YDEKRSDIIQSIKFN--------DKDKLIEFCKGI 352 (427)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHT-TCEEESC-TTSCCSSSCEEEECS--------SHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHhC-CCeecCC-CCCCCccEEEEEEEC--------CHHHHHHHHHHH
Confidence 3 568889999999999999987 7777543 555 8888884 234456777753
No 218
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.89 E-value=4.5e-22 Score=204.86 Aligned_cols=288 Identities=16% Similarity=0.155 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHhhhCCCCEEEecccHHHHHhhhhhhccCCcEEEEcCCchhHHHhH----hhhcCCeEEEecCCCHHHHH
Q 011567 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG----LYLSRSTVVYFKHNDMDSLR 229 (483)
Q Consensus 154 ~~~~~l~~~La~~~g~e~~i~~~sG~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g----~~~s~~~v~~~~~~d~~~Le 229 (483)
+...++++++++++|.++++++++|++|+..++. +.++||.|++..+.|.++... +...|.+++.++.+|+++|+
T Consensus 133 ~~~~~l~~~la~~~g~~~~i~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~ 211 (464)
T 1ibj_A 133 PTRDALESLLAKLDKADRAFCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVA 211 (464)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHH
Confidence 4789999999999999999999999999988876 778999999888888877643 45678899999988998888
Q ss_pred HHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeE
Q 011567 230 NTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI 309 (483)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di 309 (483)
+.++. ++++|+++++++++|.+.|+++|+++|++||+++|+||+|+.|... .. .+ + ++|+
T Consensus 212 ~~i~~----------~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~---~~-~~-~-----~~di 271 (464)
T 1ibj_A 212 AAIGP----------QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLS---RP-LE-L-----GADI 271 (464)
T ss_dssp HHCCS----------SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTC---CG-GG-T-----TCSE
T ss_pred HHhcc----------CceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccC---Ch-hh-c-----CCEE
Confidence 77642 3789999999999999999999999999999999999999765321 11 11 2 3499
Q ss_pred EEccccccccC----CCceeecc-HHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHH-
Q 011567 310 VTAAMGHALAT----EGGFCTGS-ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE-NPDLITKLKKNTAILRT- 382 (483)
Q Consensus 310 ~~~s~~K~lg~----~GG~i~~~-~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~-~~~~~~~l~~~~~~l~~- 382 (483)
++.|++|++++ .+|+++++ +++++.++.... .++.+.+++.+.++.++++.+.. .....+......+++.+
T Consensus 272 v~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~--~~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~ 349 (464)
T 1ibj_A 272 VMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQN--SEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSH 349 (464)
T ss_dssp EEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHH--HTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHH--hcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999974 34888887 477776654321 12234578777777777653321 01112222333333332
Q ss_pred ---------hhccCCCceeecCC---CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecc------c----
Q 011567 383 ---------GLSDIHGLSIASNP---ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKR------S---- 440 (483)
Q Consensus 383 ---------~L~~~~~~~i~~~~---~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~------~---- 440 (483)
.|.+++++.+..+. .++++.+.+++ .....++.+. |+..||.++.+.. +
T Consensus 350 ~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~--------~~~~~~~~~~-L~~~gi~v~~G~~~sl~~~p~~~~ 420 (464)
T 1ibj_A 350 PRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS--------VALSKHLVET-TKYFSIAVSFGSVKSLISMPCFMS 420 (464)
T ss_dssp TTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSC--------HHHHHHHHHH-CSSSEECSCCCSSSCEEECTTTTT
T ss_pred CCceEEECCCCCCCcchHHHhccCCCCceEEEEEECC--------HHHHHHHHHh-cCcceEeecCCCCceeeecccccc
Confidence 23334455544322 36788888731 1112345554 3445777665431 0
Q ss_pred --ccc-----cCCC-CCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 441 --MLD-----KCRL-PVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 441 --~~~-----~~~~-~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
..+ .... +..||+++.. ||++++++.|++++++
T Consensus 421 ~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 421 HASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKT 461 (464)
T ss_dssp TCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred cccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHhh
Confidence 000 0001 2349999976 8999999999988753
No 219
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.89 E-value=7.1e-22 Score=210.73 Aligned_cols=304 Identities=14% Similarity=0.136 Sum_probs=209.4
Q ss_pred hHHHHHHHHHHHhhhCCCCEEEecccH-HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC--------
Q 011567 153 IDVHLDCEARIAKFLGTPDSILYSYGL-STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN-------- 223 (483)
Q Consensus 153 ~~~~~~l~~~La~~~g~e~~i~~~sG~-~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~-------- 223 (483)
...+.++++.+|+++|.++++++++|+ .||..++.+++++||.|++++.+|.|+..++.++|.++++++..
T Consensus 194 ~g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~~~gi~~ 273 (715)
T 3n75_A 194 SGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILG 273 (715)
T ss_dssp BTHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBCTTCCBC
T ss_pred cHHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecccccccccc
Confidence 347899999999999999999998885 89999999999999999999999999999999999998887631
Q ss_pred -------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCcccccc-ccCCCCc
Q 011567 224 -------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGV-LGRSGRG 295 (483)
Q Consensus 224 -------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~-lg~~G~g 295 (483)
|+++|++.+++.... +..+.+|+++| +++|.+.|+++|.++|++++ +++||+|+.+. +++.+.+
T Consensus 274 ~i~~~~~d~e~Le~~l~~~~~~----k~p~~vivt~p--n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~~ 345 (715)
T 3n75_A 274 GIPQSEFQHATIAKRVKETPNA----TWPVHAVITNS--TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEG 345 (715)
T ss_dssp CCCGGGGSHHHHHHHHHHSTTC----CSCSEEEEESS--CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGTT
T ss_pred CcccccCCHHHHHHHHhhCcCc----cCceEEEEECC--CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCcccc
Confidence 789999998764321 01125666666 67899999999999999874 79999998764 4432222
Q ss_pred cccc-cCCCCCceeEE---EccccccccC--CCceeeccHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHhc--Cc
Q 011567 296 LTEH-CGVPVDKIDIV---TAAMGHALAT--EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEE--NP 367 (483)
Q Consensus 296 ~~~~-~~v~~~~~Di~---~~s~~K~lg~--~GG~i~~~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~--~~ 367 (483)
.... .+ ..+|++ ++|+||++++ .||++..+.++..........+.+++++++..+++..+++++++. ..
T Consensus 346 ~~al~~g---~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~~~g~ 422 (715)
T 3n75_A 346 KCGMSGG---RVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGK 422 (715)
T ss_dssp SSTTSSS---CCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSHHHHH
T ss_pred ccccccC---cCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccH
Confidence 2111 11 113544 8999999985 578887665432222222334566778889999989999998863 45
Q ss_pred HHHHHHHHHHHHHHHhhccCCC------ceeecCCC----------------------------CCE-EEEEecCC--CC
Q 011567 368 DLITKLKKNTAILRTGLSDIHG------LSIASNPE----------------------------SPI-VFLILEKS--TG 410 (483)
Q Consensus 368 ~~~~~l~~~~~~l~~~L~~~~~------~~i~~~~~----------------------------~~i-~~l~l~~~--~~ 410 (483)
++++++.++.+++++.|+++++ +.+..+.. .|. +.+..+.. .|
T Consensus 423 ~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G 502 (715)
T 3n75_A 423 RLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDG 502 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECSCBCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEcCCCCCCC
Confidence 7889999999999999977642 23221100 111 12222110 01
Q ss_pred CchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 411 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 411 ~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
......-....+.+ .|+++||.+...... .+=+.++...|++++++++++|.++-+.
T Consensus 503 ~~~~~Gi~g~~~~~-~L~~~~I~~E~~d~~---------~vl~l~s~g~~~~~~~~L~~aL~~~~~~ 559 (715)
T 3n75_A 503 TMSDFGIPASIVAK-YLDEHGIVVEKTGPY---------NLLFLFSIGIDKTKALSLLRALTDFKRA 559 (715)
T ss_dssp CBCSSCCCHHHHHH-HHHHTTCCCSEEETT---------EEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCcHHHHHH-HHHHCCCEEEecCCC---------cEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 00000000113333 466679987654322 2556778889999999999999887553
No 220
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.88 E-value=9.6e-22 Score=201.86 Aligned_cols=283 Identities=15% Similarity=0.179 Sum_probs=192.2
Q ss_pred ChHHHHHHHHHHHhhhCCCCEEEeccc-HHHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecC--CC----
Q 011567 152 TIDVHLDCEARIAKFLGTPDSILYSYG-LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH--ND---- 224 (483)
Q Consensus 152 ~~~~~~~l~~~La~~~g~e~~i~~~sG-~~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~--~d---- 224 (483)
......++++.+++ +|.++.+++++| ++++..++++++++||.|++++.+|.++..++...|.+++.++. ++
T Consensus 55 ~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~ 133 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEGHFIETHQSPLTNH 133 (446)
T ss_dssp CSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHHTCCEEECEEEECTTTSS
T ss_pred cchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHcCCeEEEEeCeeccccCc
Confidence 34567899999999 998777776554 69999999999999999999999999999999999998887765 32
Q ss_pred --HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCC
Q 011567 225 --MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGV 302 (483)
Q Consensus 225 --~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v 302 (483)
.-+++++ ... ++++|++.+ .+++|.+.|+++|+++|++||+++|+||+|+. .++-.+. .......
T Consensus 134 ~~~~d~~~l---~~~-------~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~-~~~f~~~-~~~~~~~ 200 (446)
T 2x3l_A 134 YNKVNLSRL---NND-------GHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGA-HFGLQGF-PDSTLNY 200 (446)
T ss_dssp EEEEEC-----------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCT-TTTSTTS-CCCGGGG
T ss_pred CCCCCHHHH---cCC-------CceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhh-hhccCCC-CCChHHc
Confidence 1123333 111 245666665 45589999999999999999999999999986 2322122 1111111
Q ss_pred CCCceeEEEcccccccc-C-CCceeeccHHHHH--HHHhcCCceeecCCCcHHHHHHHHHHHHHHhcC-cH-HHHHHHHH
Q 011567 303 PVDKIDIVTAAMGHALA-T-EGGFCTGSARVVD--HQRLSSSGYVFSASLPPYLASAAITAIDVLEEN-PD-LITKLKKN 376 (483)
Q Consensus 303 ~~~~~Di~~~s~~K~lg-~-~GG~i~~~~~~~~--~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~~~-~~-~~~~l~~~ 376 (483)
.+|+++.|++|+++ + .+|+++++++.++ .++... ....+++.+...+++..++++.++.. .+ +.++.+++
T Consensus 201 ---g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~-~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l 276 (446)
T 2x3l_A 201 ---QADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYL-SYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQL 276 (446)
T ss_dssp ---TCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHH-HHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred ---CCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHH-HHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 24899999999775 3 3488888776544 222211 11123345566666666677777653 23 77888888
Q ss_pred HHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc
Q 011567 377 TAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS 456 (483)
Q Consensus 377 ~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~ 456 (483)
.+++++. ++++........+++.+... + ..++.+.+.+ +||.+.... ...+|++++
T Consensus 277 ~~~l~~~-----g~~~~~~~~~~~l~i~~~~~------~---~~~l~~~L~~-~GI~v~~~g---------~~~iRi~~~ 332 (446)
T 2x3l_A 277 IECLENK-----GFEMLQVDDPLKLLIKYEGF------T---GHDIQNWFMN-AHIYLELAD---------DYQALAILP 332 (446)
T ss_dssp HHHHHHH-----TCEEEECSSTTEEEEECTTS------C---HHHHHHHHHH-TTEEESEEC---------SSCEEEECC
T ss_pred HHHHHHc-----CCEECcCCCCeEEEEEeCCc------C---HHHHHHHHHH-CCCEEEecC---------CCEEEEEee
Confidence 8888776 66665443334566665310 1 2346665555 499986221 134999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 011567 457 AAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 457 ~~~t~edi~~~~~~l~~~~~~ 477 (483)
..+|++|+ +++++|+++++.
T Consensus 333 ~~~t~e~i-~l~~aL~~~~~~ 352 (446)
T 2x3l_A 333 LWHHDDTY-LFDSLLRKIEDM 352 (446)
T ss_dssp CCCTTCCC-CHHHHHHHHHTC
T ss_pred cCCCHHHH-HHHHHHHHHHHh
Confidence 98999999 999999988654
No 221
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.88 E-value=2.1e-21 Score=210.52 Aligned_cols=315 Identities=13% Similarity=0.113 Sum_probs=209.8
Q ss_pred cChHHHHHHHHHHHhhhCCCCEEEecccH-HHHHhhhhhhccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCC------
Q 011567 151 GTIDVHLDCEARIAKFLGTPDSILYSYGL-STMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHN------ 223 (483)
Q Consensus 151 g~~~~~~~l~~~La~~~g~e~~i~~~sG~-~a~~~ai~~~~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~------ 223 (483)
.+.....++++.+++++|.++++++++|+ +++..++.+++++||.|++++..|.++..++..+|.+++.++..
T Consensus 202 ~~~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~~~g~ 281 (755)
T 2vyc_A 202 DHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGI 281 (755)
T ss_dssp TTCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBCTTSC
T ss_pred cCccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCCcccc
Confidence 34457789999999999999888887775 78999999999999999999999999999999999998877531
Q ss_pred ---------CHHHHHHHHHHhhhh-hhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCcccccc-ccCC
Q 011567 224 ---------DMDSLRNTLERVTAD-NKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGV-LGRS 292 (483)
Q Consensus 224 ---------d~~~Le~~l~~~~~~-~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~-lg~~ 292 (483)
|+++|++.+++.... .++.+.++.++++++ +.+|.+.|+++|+++|++||+++++||+|+.+. ++..
T Consensus 282 ~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p--n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~ 359 (755)
T 2vyc_A 282 IGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC--TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPI 359 (755)
T ss_dssp BCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS--CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGG
T ss_pred ccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC--CCCceecCHHHHHHHHHHcCCEEEEECcCchhcccCcc
Confidence 788999888753211 001112234555654 457999999999999999999999999997542 3322
Q ss_pred CCccccccC--CC-CCceeEEEccccccccCC--CceeeccHH--HH--HHHHhcCCceeecCCCcHHHHHHHHHHHHHH
Q 011567 293 GRGLTEHCG--VP-VDKIDIVTAAMGHALATE--GGFCTGSAR--VV--DHQRLSSSGYVFSASLPPYLASAAITAIDVL 363 (483)
Q Consensus 293 G~g~~~~~~--v~-~~~~Di~~~s~~K~lg~~--GG~i~~~~~--~~--~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l 363 (483)
+++.....+ .+ .+..++++.|+||++++. ||++..+++ .+ ..+... .....+++.+...+++..++++.+
T Consensus 360 ~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~-~~~~~s~sp~~~~iaal~aA~~~l 438 (755)
T 2vyc_A 360 YADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQA-YMMHATTSPLYAICASNDVAVSMM 438 (755)
T ss_dssp GTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHH-HHHTSCSSCCHHHHHHHHHHHHHH
T ss_pred cCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHH
Confidence 111211122 22 123455899999999743 566655443 11 122111 011224456677777777888877
Q ss_pred hc--CcHHHHHHHHHHHHHHHhhccCCC---------ceeecCC------------------------------------
Q 011567 364 EE--NPDLITKLKKNTAILRTGLSDIHG---------LSIASNP------------------------------------ 396 (483)
Q Consensus 364 ~~--~~~~~~~l~~~~~~l~~~L~~~~~---------~~i~~~~------------------------------------ 396 (483)
.. ..+.++++.++.++++++|+++++ +.+..+.
T Consensus 439 ~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (755)
T 2vyc_A 439 DGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESW 518 (755)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTT
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccchhhhhccCccccc
Confidence 64 356888999999999999977655 4333211
Q ss_pred -------------CCCEEEEEecC--CCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCH
Q 011567 397 -------------ESPIVFLILEK--STGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSE 461 (483)
Q Consensus 397 -------------~~~i~~l~l~~--~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~ 461 (483)
+...+.+.++. ..+......-....+.+ .|+++||.+.... ...+|++++...|+
T Consensus 519 h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~-~L~~~gI~~e~~~---------~~~v~~~~~~g~t~ 588 (755)
T 2vyc_A 519 HGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTA-WLGRHGIVPTRTT---------DFQIMFLFSMGVTR 588 (755)
T ss_dssp TCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHH-HHHTTTCCCSEEC---------SSEEEEECCTTCCT
T ss_pred ccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHH-HHHHCCCEEeecC---------CCeEEEEECCCCCH
Confidence 11244444432 11100000001123444 4666798775431 24499999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011567 462 ADLVKACESLKRISAVV 478 (483)
Q Consensus 462 edi~~~~~~l~~~~~~~ 478 (483)
+++++++++|+++.+..
T Consensus 589 ~~~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 589 GKWGTLVNTLCSFKRHY 605 (755)
T ss_dssp TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999887544
No 222
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.87 E-value=2.1e-21 Score=197.87 Aligned_cols=243 Identities=13% Similarity=0.122 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHhhhCCCCEEE---ecccHHHHHhhhhhhccCCcEEEEcC-CchhHHHhHhh----------hcCCeEEE
Q 011567 154 DVHLDCEARIAKFLGTPDSIL---YSYGLSTMFSAIPCFCKKGDLIVADE-GVHWGIQNGLY----------LSRSTVVY 219 (483)
Q Consensus 154 ~~~~~l~~~La~~~g~e~~i~---~~sG~~a~~~ai~~~~~~gdiI~~~~-~~h~s~~~g~~----------~s~~~v~~ 219 (483)
....++++.+++++|.+.+.+ +++|++|+..++.++.++||.|+++. +.|.++...+. ..|.+++.
T Consensus 65 ~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~ 144 (431)
T 3ht4_A 65 IGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNA 144 (431)
T ss_dssp HHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEE
T ss_pred hhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEE
Confidence 457899999999999988776 78999999999999999999999887 88888876554 36788888
Q ss_pred ecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEec----ccCCCCCccChHHHHHHHHH--cCcEEEEeCcccccc
Q 011567 220 FKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEA----VYQNSGQIAPLDELIRLKEK--YRFRVFLDESNSFGV 288 (483)
Q Consensus 220 ~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~----v~~~~G~i~~L~~l~~l~~k--~~~~li~DEa~s~g~ 288 (483)
++++ |+++|++.+++ ++++|++++ +.++.|.+.++++|+++|++ ||+++|+||+|+.+.
T Consensus 145 v~~~~~~~~d~e~l~~~l~~----------~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~ 214 (431)
T 3ht4_A 145 VPLTEGGLVDFEAVAAAIHS----------NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFI 214 (431)
T ss_dssp CCBCTTSSBCHHHHHHHCCT----------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTS
T ss_pred eCCCCCCCcCHHHHHhhcCC----------CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhc
Confidence 8874 88888887742 378899886 66677888889999999999 999999999998775
Q ss_pred ccCCCCccccccCCCCCceeEEEcccccccc----CCCceeeccHHHHHHHHh--cCCceeecCCCcHHHHHHHHHHHHH
Q 011567 289 LGRSGRGLTEHCGVPVDKIDIVTAAMGHALA----TEGGFCTGSARVVDHQRL--SSSGYVFSASLPPYLASAAITAIDV 362 (483)
Q Consensus 289 lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg----~~GG~i~~~~~~~~~~~~--~~~~~~fs~~~~p~~~aaa~~al~~ 362 (483)
.+. ... .+ .+|++++|++|++| ..|||+++++++++.++. ...++..+.+.++..+.++...++.
T Consensus 215 ~~~--~~~--~~-----g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~ 285 (431)
T 3ht4_A 215 EEQ--EPC--HV-----GADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFL 285 (431)
T ss_dssp SSC--CGG--GT-----TCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHH
T ss_pred cCC--Ccc--cc-----CCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhHhhh
Confidence 432 111 12 24899999999975 468999999999988765 2222222222222223334455554
Q ss_pred HhcCcHHHHHHHHHHHHHHHhhccCCCceeecCCCCC-----EEEEEecCCCCCchhhHHHHHHHHHHHHH
Q 011567 363 LEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP-----IVFLILEKSTGSMKNDLQLLEDIADWALK 428 (483)
Q Consensus 363 l~~~~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~-----i~~l~l~~~~~~~~~~~~~~~~i~~~~l~ 428 (483)
+ +...++..+++.++.+.|+++ |+++.+. .+. ++.+.++ +...+.++++.+.+
T Consensus 286 ~---~~~~~~~~~~a~~l~~~L~~~-g~~v~p~-~~~~~~~li~~i~l~--------~~~~~~~~~~~l~~ 343 (431)
T 3ht4_A 286 A---PHVAGQALKGAIFTAAFLEKL-GMNTSPA-WNAPRTDLIQSVQFD--------DKDRMIAFCQAIQY 343 (431)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TCCEESC-TTSCCSSSCCEEECC--------CHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHhC-cCEecCC-CCCCCccEEEEEEeC--------CHHHHHHHHHHHHh
Confidence 4 457788899999999999886 6666433 333 7788874 22345567775443
No 223
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.86 E-value=3.7e-20 Score=190.73 Aligned_cols=296 Identities=14% Similarity=0.125 Sum_probs=194.0
Q ss_pred hHHHHHHHHHHHhhhCCCC-EEEecccH-HHHHhhhhhhcc--CCcEEEEcCCchhHHHhHhhhcCCeEEEecC------
Q 011567 153 IDVHLDCEARIAKFLGTPD-SILYSYGL-STMFSAIPCFCK--KGDLIVADEGVHWGIQNGLYLSRSTVVYFKH------ 222 (483)
Q Consensus 153 ~~~~~~l~~~La~~~g~e~-~i~~~sG~-~a~~~ai~~~~~--~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~------ 222 (483)
.+...++++++++++|.+. ++++++|+ .++..++.++.. +++.|++....|.++.+.++..|.+++.++.
T Consensus 132 ~~~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~ 211 (456)
T 2z67_A 132 YALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDR 211 (456)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTE
T ss_pred HHHHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEeccCCC
Confidence 3566789999999999875 55667778 566656655443 6787887778999999999999998877653
Q ss_pred --CCHHHHHHHHH-HhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccc
Q 011567 223 --NDMDSLRNTLE-RVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEH 299 (483)
Q Consensus 223 --~d~~~Le~~l~-~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~ 299 (483)
.|+++|++.++ ..... ++++|++...++++|.+.|+++|.++|++||+++++||+|+....|...... ..
T Consensus 212 ~~~d~~~l~~~i~~~~~~~------~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~-~~ 284 (456)
T 2z67_A 212 VYVPVEDIENAIKKEIELG------NRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLK-KA 284 (456)
T ss_dssp EECCHHHHHHHHHHHHHTT------CCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHH-HH
T ss_pred CCcCHHHHHHHHHHHhhCC------CeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHH-Hh
Confidence 37899998883 21111 3566767777678899999999999999999999999998755443100000 00
Q ss_pred cCCCCCceeEEEcccccccc-CC-Cceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh--cCcHHHHHHH
Q 011567 300 CGVPVDKIDIVTAAMGHALA-TE-GGFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLK 374 (483)
Q Consensus 300 ~~v~~~~~Di~~~s~~K~lg-~~-GG~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~--~~~~~~~~l~ 374 (483)
. . ..+|+++.|++|+++ +. +|+++. ++++++.+.....+ ..+.++ +.++.+++..+. ..+++.++..
T Consensus 285 ~--~-~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g---~~~~~~--~~~~~aal~~l~~~~~~~~~~~~~ 356 (456)
T 2z67_A 285 F--K-YRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPG---RASATP--VVNTLVSLLSMGSKNYLELVKNQK 356 (456)
T ss_dssp H--T-SCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCS---CBCSHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--C-CCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCC---CCCCCH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 145899999999864 33 488877 57777766433222 222233 222333444332 2245788899
Q ss_pred HHHHHHHHhhccCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEE-EEeec----ccccccCC
Q 011567 375 KNTAILRTGLSDIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVF-VVTSK----RSMLDKCR 446 (483)
Q Consensus 375 ~~~~~l~~~L~~~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~-v~~~~----~~~~~~~~ 446 (483)
++++++.+.|++++ |+.+..+ . +++.+.+..+. . ..++.+.+. ++|+. ++... +.. .++.
T Consensus 357 ~~~~~l~~~L~~~~~~~g~~v~~~-~-~~v~~~~~~~~-----~---~~~l~~~L~-~~gi~~~rv~~~~g~f~G-~~~~ 424 (456)
T 2z67_A 357 NSKKLLDELLNDLSKKTGGKFLDV-E-SPIASCISVNS-----D---PVEIAAKLY-NLRVTGPRGIKKTDHFGN-CYLG 424 (456)
T ss_dssp HHHHHHHHHHHHHHHHSSCCBCCC-C-CSSEEEEECSS-----C---HHHHHHHHH-HTTEESCEEECTTCHHHH-TCSS
T ss_pred HHHHHHHHHHHhcccccCCEecCC-C-CeEEEEEeccc-----H---HHHHHHHHH-HcCCCcceEEeecCcccc-cccc
Confidence 99999999998875 7666544 3 66666662111 0 235666544 45752 11110 000 0000
Q ss_pred --CCCceEEEccCCCCHHHHHHHHHHHHHHH
Q 011567 447 --LPVGIRLFVSAAHSEADLVKACESLKRIS 475 (483)
Q Consensus 447 --~~~~lRi~~~~~~t~edi~~~~~~l~~~~ 475 (483)
+.+.+|++++..+|++|+|+++++|++++
T Consensus 425 ~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 425 TYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp CCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred ccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 11359999999999999999999998764
No 224
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.85 E-value=3.4e-20 Score=187.50 Aligned_cols=283 Identities=11% Similarity=0.036 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHhhhCCC---CEEE-ecccHHHHHhhhhhhccCC-cEEEEcCCchhHHH-hHhhhc--CCeEEEecCCCH
Q 011567 154 DVHLDCEARIAKFLGTP---DSIL-YSYGLSTMFSAIPCFCKKG-DLIVADEGVHWGIQ-NGLYLS--RSTVVYFKHNDM 225 (483)
Q Consensus 154 ~~~~~l~~~La~~~g~e---~~i~-~~sG~~a~~~ai~~~~~~g-diI~~~~~~h~s~~-~g~~~s--~~~v~~~~~~d~ 225 (483)
+...++++++++++|.+ +.++ .++|++++..+++++.++| ++| ....|.... ...... |.+++.++.++-
T Consensus 78 ~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~~gv~~v--~~~~~~~~~~~~~~~~~~g~~~~~v~~~~g 155 (398)
T 2fyf_A 78 NLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLIDKRSLHL--TYGEFSAKFASAVSKNPFVGEPIIITSDPG 155 (398)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCSSCEEEE--ECSHHHHHHHHHHHHCTTSCCCEEEECCTT
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcCCCeEEE--eCCHHHHHHHHHHHHhCCCCceEEEecCCC
Confidence 46789999999999975 3455 5788899999999998887 444 555564322 122333 566666554310
Q ss_pred HHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCC
Q 011567 226 DSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVD 305 (483)
Q Consensus 226 ~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~ 305 (483)
..... +... ++++|++.++.+++|.+.|+++|.++ ||+++|+||+|+.|... .++ .
T Consensus 156 ~~~~~---~i~~-------~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~---------~~~--~ 211 (398)
T 2fyf_A 156 SAPEP---QTDP-------SVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLP---------VDI--A 211 (398)
T ss_dssp CCCCC---CCCT-------TCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSC---------CCG--G
T ss_pred CCCCc---cccC-------CCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcc---------cCc--c
Confidence 00000 1111 35677777888899999999888887 89999999999875321 122 2
Q ss_pred ceeEEEccccccccCCC--ceeeccHHHHHHHHhcC--------------------CceeecCCCcHHHHHHHHHHHHHH
Q 011567 306 KIDIVTAAMGHALATEG--GFCTGSARVVDHQRLSS--------------------SGYVFSASLPPYLASAAITAIDVL 363 (483)
Q Consensus 306 ~~Di~~~s~~K~lg~~G--G~i~~~~~~~~~~~~~~--------------------~~~~fs~~~~p~~~aaa~~al~~l 363 (483)
++|++++|++|++|+.| ||+++++++++.++... .++.+. +.+...++++.++++.+
T Consensus 212 ~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-t~~~~~~~a~~~al~~~ 290 (398)
T 2fyf_A 212 ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYN-TPAIATLALLAEQIDWL 290 (398)
T ss_dssp GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSS-CCCHHHHHHHHHHHHHH
T ss_pred cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCC-CCCHHHHHHHHHHHHHH
Confidence 35899999999998764 67888888877653210 012222 34566666677788765
Q ss_pred hc---CcHHHHHHHHHHHHHHHhhccCCCceeec-CC--CCC-EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEe
Q 011567 364 EE---NPDLITKLKKNTAILRTGLSDIHGLSIAS-NP--ESP-IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVT 436 (483)
Q Consensus 364 ~~---~~~~~~~l~~~~~~l~~~L~~~~~~~i~~-~~--~~~-i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~ 436 (483)
.+ .++..++.+++++++.+.|++++|+.+.. .+ .++ ++++.++... + ..++.+.+.+ +||.+.+
T Consensus 291 ~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~l~~~L~~-~gI~v~~ 361 (398)
T 2fyf_A 291 VGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDV-----D---AGTVAKILRA-NGIVDTE 361 (398)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTS-----C---HHHHHHHHHH-TTCBCCS
T ss_pred HHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCC-----C---HHHHHHHHHH-CCcEEec
Confidence 43 25678889999999999999887887763 12 356 8888874211 1 2356766555 4999875
Q ss_pred ecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 437 SKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 437 ~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
.. ... .+..+|+++...+|++|+++++++|++++++
T Consensus 362 g~-~~~----~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 362 PY-RKL----GRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp CC-TTT----CSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred Cc-ccC----CCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 41 111 0245999999889999999999999988754
No 225
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.85 E-value=2.5e-21 Score=195.45 Aligned_cols=274 Identities=12% Similarity=0.051 Sum_probs=187.2
Q ss_pred HHHHHHHHhhhC-------CCCEEEe-cccHHHHHhhhhhhccCCc----EEEEcCCchhHHHhHhhhcCCeEEEecCCC
Q 011567 157 LDCEARIAKFLG-------TPDSILY-SYGLSTMFSAIPCFCKKGD----LIVADEGVHWGIQNGLYLSRSTVVYFKHND 224 (483)
Q Consensus 157 ~~l~~~La~~~g-------~e~~i~~-~sG~~a~~~ai~~~~~~gd----iI~~~~~~h~s~~~g~~~s~~~v~~~~~~d 224 (483)
.+|++.+|++++ .++.+++ +++++++..++.+++++|| .|+++.++|..+...++..|.+++.++.+
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d- 149 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGD- 149 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEE-
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCC-
Confidence 788899999887 2334555 5566899999999999999 99999999999999999989888777653
Q ss_pred HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcC--cEEEEeCccccccccCCCCccccccCC
Q 011567 225 MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYR--FRVFLDESNSFGVLGRSGRGLTEHCGV 302 (483)
Q Consensus 225 ~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~--~~li~DEa~s~g~lg~~G~g~~~~~~v 302 (483)
.+.++ .. ++++|++..++|++|.+.+ +|++ ++|+ +++|+||+|..+ . ...+. .
T Consensus 150 ~~~l~------~~-------~~k~v~l~~p~NPtG~~~~--~l~~--~~~~~~~~ii~De~y~~~---~-~~~l~----~ 204 (391)
T 3bwn_A 150 AWGFD------KK-------GPYIELVTSPNNPDGTIRE--TVVN--RPDDDEAKVIHDFAYYWP---H-YTPIT----R 204 (391)
T ss_dssp STTCC------CC-------SCEEEEEESSCTTTCCCCC--CCC-------CCCEEEEECTTCST---T-TSCCC----C
T ss_pred HHHcC------CC-------CCEEEEECCCCCCCchhHH--HHHH--HhhcCCCEEEEeCCCCCC---C-CCccc----c
Confidence 23332 01 3567777888899999886 4444 2255 999999999741 1 01111 1
Q ss_pred CCCceeEEEccccccccCCC---ceeec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh----------c-Cc
Q 011567 303 PVDKIDIVTAAMGHALATEG---GFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE----------E-NP 367 (483)
Q Consensus 303 ~~~~~Di~~~s~~K~lg~~G---G~i~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~----------~-~~ 367 (483)
..+.+|+++|+||++|..| ||+++ ++++++.++....... .+.+++...++.++++... + ..
T Consensus 205 -~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~--~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~ 281 (391)
T 3bwn_A 205 -RQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNS--IGVSKESQVRTAKILNVLKETCKSESESENFFK 281 (391)
T ss_dssp -CBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHH
T ss_pred -CCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccc--cCCCHHHHHHHHHHHhCcchhccccccHHHHHH
Confidence 1345899999999999777 99886 8888887754322111 2346666666667776431 1 24
Q ss_pred HHHHHHHHHHHHHHHhhccCCCceeecC-------------CCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEE
Q 011567 368 DLITKLKKNTAILRTGLSDIHGLSIASN-------------PESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV 434 (483)
Q Consensus 368 ~~~~~l~~~~~~l~~~L~~~~~~~i~~~-------------~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v 434 (483)
+.++.++++.+++.+.|++++++.+..+ +.+.++++.+++. +.+..+++++||.+
T Consensus 282 ~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~------------~~~~~~l~~~gV~v 349 (391)
T 3bwn_A 282 YGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE------------TDLVSELRRHKVMS 349 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS------------CCHHHHHHHTTEEC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH------------HHHHHHHHHCCEEE
Confidence 5778888999999999988766655322 2233677777421 11333566679999
Q ss_pred EeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 435 VTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 435 ~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
.++..+.. .+..+||++.. +++++++++++|++++++
T Consensus 350 ~pg~~fg~----~~~~iRis~~~--~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 350 RAGERCGS----DKKHVRVSMLS--REDVFNVFLERLANMKLI 386 (391)
T ss_dssp EEGGGGTC----CTTEEEEESCS--CHHHHHHHHHHHHSCC--
T ss_pred ccCCCCCC----CCCEEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 98765432 12459999973 899999999999887654
No 226
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.85 E-value=5.2e-20 Score=193.28 Aligned_cols=340 Identities=10% Similarity=0.071 Sum_probs=204.5
Q ss_pred EEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHH-HhhhC--C----CCEEE-ecccHHHH
Q 011567 111 VVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARI-AKFLG--T----PDSIL-YSYGLSTM 182 (483)
Q Consensus 111 ~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~L-a~~~g--~----e~~i~-~~sG~~a~ 182 (483)
++||+.+.+ ++ +.|.+.+++.+.+.. .+++. ..|..++..++.+.+ .+..+ . ++.|+ .+++++++
T Consensus 106 ~i~l~~g~~-~~-~~~~~~~al~~~~~~--~~Y~~---~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal 178 (546)
T 2zy4_A 106 SLSYVRDQL-GL-DPAAFLHEMVDGILG--CNYPV---PPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAM 178 (546)
T ss_dssp HHHHHHHTS-CC-CHHHHHHHHHHHHHT--CSCCS---SSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHH
T ss_pred hhecccCCC-CC-CChHHHHHHHHhhhc--CCCCC---CcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHH
Confidence 677777644 56 567788888777742 21111 123334444433332 22221 1 23444 46667888
Q ss_pred Hhhhhh-----hccCCcEEEEcCCchhHHHhHhhhc--CCeEEEecC-------CCHHHHHHHHHHhhhhhhhccCccEE
Q 011567 183 FSAIPC-----FCKKGDLIVADEGVHWGIQNGLYLS--RSTVVYFKH-------NDMDSLRNTLERVTADNKRAKKLRRY 248 (483)
Q Consensus 183 ~~ai~~-----~~~~gdiI~~~~~~h~s~~~g~~~s--~~~v~~~~~-------~d~~~Le~~l~~~~~~~~~~~~~~~~ 248 (483)
..++.+ ++++||.|+++.++|..+.....+. |.+++.++. .|+++|++.+ .. ++++
T Consensus 179 ~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~---~~-------~~k~ 248 (546)
T 2zy4_A 179 AYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLK---DP-------AIKI 248 (546)
T ss_dssp HHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGG---ST-------TEEE
T ss_pred HHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhh---CC-------CCeE
Confidence 888776 5789999999999998888775554 467777654 2556665433 11 2567
Q ss_pred EEEecccCCCCCccC---hHHHHHHH--HHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-
Q 011567 249 IVVEAVYQNSGQIAP---LDELIRLK--EKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG- 322 (483)
Q Consensus 249 iv~e~v~~~~G~i~~---L~~l~~l~--~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G- 322 (483)
|++..++|++|.+.+ +++|+++| ++||+++|+||+|+.+..+ +..+.+ .. .+.++++.|+||++|..|
T Consensus 249 v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~--~~s~~~---~~-~~~~i~~~S~SK~~g~~Gl 322 (546)
T 2zy4_A 249 FFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD--FQSLFA---IC-PENTLLVYSFSKYFGATGW 322 (546)
T ss_dssp EEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT--CCCHHH---HC-GGGEEEEEESTTTTTCGGG
T ss_pred EEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc--CcCHHH---hC-CCCEEEEEeCccccCCCCc
Confidence 776688999999988 67788998 7899999999999865432 222222 11 235788999999998767
Q ss_pred --ceeeccHH-HHHHHHhc-------------C----------------------CceeecCCCcHHHHHHHHHH-HHHH
Q 011567 323 --GFCTGSAR-VVDHQRLS-------------S----------------------SGYVFSASLPPYLASAAITA-IDVL 363 (483)
Q Consensus 323 --G~i~~~~~-~~~~~~~~-------------~----------------------~~~~fs~~~~p~~~aaa~~a-l~~l 363 (483)
||++++++ +++.+... . ..+.+.+...+...+++..+ ...+
T Consensus 323 RiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all 402 (546)
T 2zy4_A 323 RLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALM 402 (546)
T ss_dssp CEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHH
Confidence 99988775 66655211 0 00111222233333333222 2223
Q ss_pred hcC----cHHHHHHHHHHHHHHHhhccCCCceeecCCCCCEEEEEecCCCCCchhh--------HHHHHHHHHHHHHhCC
Q 011567 364 EEN----PDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKND--------LQLLEDIADWALKEDG 431 (483)
Q Consensus 364 ~~~----~~~~~~l~~~~~~l~~~L~~~~~~~i~~~~~~~i~~l~l~~~~~~~~~~--------~~~~~~i~~~~l~~~G 431 (483)
++. .++++.++++.+.+.+.|. + ++.+..+..+.++++.+..-....... .....+.+.+++++.|
T Consensus 403 ~~~~~~~~~~r~~~~~r~~~l~~~L~-~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~g 480 (546)
T 2zy4_A 403 DEADEYKHTLKQLIRRRETTLYRELG-M-PPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETG 480 (546)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHGGGT-S-SCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHS
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhcC-C-CcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCC
Confidence 221 2456667777777887775 3 444443445666777763100000000 0001123334556669
Q ss_pred EEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567 432 VFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 432 v~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~ 480 (483)
|.+.++..... ....+||++. ..+++++++++++|++++.+...
T Consensus 481 V~v~pG~~F~~----~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~~~ 524 (546)
T 2zy4_A 481 IVLLPGRGFGS----NRPSGRASLA-NLNEYEYAAIGRALRKMADELYA 524 (546)
T ss_dssp CCCEESSCTTC----SSCEEEEESS-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCccccCC----CCCeEEEEec-cCCHHHHHHHHHHHHHHHHHHHH
Confidence 99998765432 1234999996 46899999999999999887653
No 227
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.84 E-value=9.1e-20 Score=184.47 Aligned_cols=320 Identities=13% Similarity=0.113 Sum_probs=203.8
Q ss_pred eEEEeecCCCC---C-CCCChHHHHHHHHHH-HhcCC-CCCCCCCcccChHHHHHHHHHHHhhh-C---C----CC--EE
Q 011567 110 EVVNFASANYL---G-LIGHEKLLESCTSAL-EKYGV-GSCGPRGFYGTIDVHLDCEARIAKFL-G---T----PD--SI 173 (483)
Q Consensus 110 ~~id~~s~~~l---G-~~~~p~i~~a~~~~l-~~~g~-g~~~~~~~~g~~~~~~~l~~~La~~~-g---~----e~--~i 173 (483)
.+|||+-+.|. | ....+.++++.. .+ +..+. +++. ..|. .+|++.+++++ + . ++ .+
T Consensus 30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~---~~G~----~~lr~aia~~~~~~~~~~~~~~~i~i~ 101 (405)
T 3k7y_A 30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLL---GNGT----EDFSTLTQNLIFGNNSKYIEDKKICTI 101 (405)
T ss_dssp SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCT---TSSC----HHHHHHHHHHHHCSSCTTTTTTCEEEE
T ss_pred CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCC---CCCc----HHHHHHHHHHHcCCCCccccccceEEE
Confidence 57999877542 2 223567777766 43 33222 1111 2333 45666666654 2 1 22 35
Q ss_pred EecccHHHHHhhhhhhcc--CCcEEEEcCCchhHHHhHhhhcCCeEEEecC---C----CHHHHHHHHHHhhhhhhhccC
Q 011567 174 LYSYGLSTMFSAIPCFCK--KGDLIVADEGVHWGIQNGLYLSRSTVVYFKH---N----DMDSLRNTLERVTADNKRAKK 244 (483)
Q Consensus 174 ~~~sG~~a~~~ai~~~~~--~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~---~----d~~~Le~~l~~~~~~~~~~~~ 244 (483)
+.++|++|+..++.+++. + |.|++..+++..+...++..|.+++.++. + |+++|++.+++..
T Consensus 102 ~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-------- 172 (405)
T 3k7y_A 102 QCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIP-------- 172 (405)
T ss_dssp EEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSC--------
T ss_pred EcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCC--------
Confidence 567778999999988887 8 99999999999999999999999988764 1 6788888776422
Q ss_pred ccEEEEEec-ccCCCCCccC---hHHHHHHHHHcCcEEEEeCccccccccCCCC---ccccccCCCCCceeEEEcccccc
Q 011567 245 LRRYIVVEA-VYQNSGQIAP---LDELIRLKEKYRFRVFLDESNSFGVLGRSGR---GLTEHCGVPVDKIDIVTAAMGHA 317 (483)
Q Consensus 245 ~~~~iv~e~-v~~~~G~i~~---L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~---g~~~~~~v~~~~~Di~~~s~~K~ 317 (483)
+++++++.+ .+|++|.+.+ +++|+++|++|++++|+||+|.....+.... .+...... .+..|+++||||+
T Consensus 173 ~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~ 250 (405)
T 3k7y_A 173 NGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEK--NIAFSVCQSFSKN 250 (405)
T ss_dssp SSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTT--TCCEEEEEECTTT
T ss_pred CCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhc--CCcEEEEeeCCcc
Confidence 245666655 4799999988 7889999999999999999998654431000 11111121 2235888999999
Q ss_pred ccCCC---ceee---ccHHHHHHHHhc---CCceeecCCCcHHHHHHHHHHHHH-------HhcCcHHHHHHHHHHHHHH
Q 011567 318 LATEG---GFCT---GSARVVDHQRLS---SSGYVFSASLPPYLASAAITAIDV-------LEENPDLITKLKKNTAILR 381 (483)
Q Consensus 318 lg~~G---G~i~---~~~~~~~~~~~~---~~~~~fs~~~~p~~~aaa~~al~~-------l~~~~~~~~~l~~~~~~l~ 381 (483)
||..| ||++ +++++++.+... .....++ +.+.+...++.++++. .++..+++++++++++.+.
T Consensus 251 ~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~ 329 (405)
T 3k7y_A 251 MSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYS-SPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFF 329 (405)
T ss_dssp SCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTS-SCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccC-CCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98766 9964 466665443211 0011222 2244444444444432 1122345677888999999
Q ss_pred Hhhc----cCC---CceeecCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEE
Q 011567 382 TGLS----DIH---GLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLF 454 (483)
Q Consensus 382 ~~L~----~~~---~~~i~~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~ 454 (483)
+.|+ ++. ++.+..+..+.++++.+.. +.+.++ +++||++.+. -||+
T Consensus 330 ~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~-------------~~~~~L-~~~gV~v~p~-------------~Ris 382 (405)
T 3k7y_A 330 NKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA-------------KIAEHL-KTHHIYIINN-------------GRIN 382 (405)
T ss_dssp HHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG-------------GGTTTT-TTTTEECCTT-------------SEEE
T ss_pred HHHHhhhhhcCCCCCCccccCCceEEEecCCCH-------------HHHHHH-HHCCEeecCC-------------CeEE
Confidence 9998 652 1455545455555554421 224444 6789988752 3898
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHH
Q 011567 455 VSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 455 ~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
+.. .++++|++++++|+++++.
T Consensus 383 ~a~-~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 383 VSG-ITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp GGG-CCTTHHHHHHHHHHHHHHC
T ss_pred Eec-cCHHHHHHHHHHHHHHHhh
Confidence 853 6789999999999998753
No 228
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.84 E-value=4e-19 Score=182.05 Aligned_cols=322 Identities=15% Similarity=0.110 Sum_probs=199.0
Q ss_pred EEEeecCCCCCCCCChHHHHHHH---HHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCE--EEecccHHHHHhh
Q 011567 111 VVNFASANYLGLIGHEKLLESCT---SALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDS--ILYSYGLSTMFSA 185 (483)
Q Consensus 111 ~id~~s~~~lG~~~~p~i~~a~~---~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~--i~~~sG~~a~~~a 185 (483)
++++.+..+.++ ..|...+++. +.+..|+ ...+....|..+...++++.+++++|.+.. +++++|+.+++++
T Consensus 65 ~~~~~~~g~~~~-~~p~~v~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~ 141 (438)
T 1wyu_A 65 HKAFLGGGVRSH-HVPPVVQALAARGEFLTAYT--PYQPEVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGV 141 (438)
T ss_dssp TTCCCCSSCCCC-CCCHHHHHHHTSHHHHHCCS--CCSGGGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHH
T ss_pred cccccCCCccCC-cCcHHHHHHHhcchhhhcCC--CCcchhhhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHH
Confidence 444444444444 3465555553 3334442 222233445667889999999999998744 4566666443433
Q ss_pred hhh-hccCCcEEEEcCCchhHHHhHhh----hcCCeEEEecCCC-HHHHHHHHHHhhhhhhhccCccEEEEEecccCCCC
Q 011567 186 IPC-FCKKGDLIVADEGVHWGIQNGLY----LSRSTVVYFKHND-MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG 259 (483)
Q Consensus 186 i~~-~~~~gdiI~~~~~~h~s~~~g~~----~s~~~v~~~~~~d-~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G 259 (483)
..+ ..++||.|+++...|.++...++ ..|.+++.++..+ .-++++ + .+ ++++|++..+ +++|
T Consensus 142 ~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~~d~~~-i---~~-------~t~~v~i~~p-n~tG 209 (438)
T 1wyu_A 142 LLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTPLPE-V---GE-------EVGAVVVQNP-NFLG 209 (438)
T ss_dssp HHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCCCCC-C---CT-------TEEEEEEESS-CTTS
T ss_pred HHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCcCCccCHHH-h---CC-------CeEEEEEECC-CCCe
Confidence 332 24689999999999999876653 4788888887422 111222 2 11 3677777777 8899
Q ss_pred CccChHHHHHHHHHcCcEEEEeCc-cccccccCCCCccccccCCCCCceeEEEcccccc------cc-CCCceeeccHHH
Q 011567 260 QIAPLDELIRLKEKYRFRVFLDES-NSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHA------LA-TEGGFCTGSARV 331 (483)
Q Consensus 260 ~i~~L~~l~~l~~k~~~~li~DEa-~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~------lg-~~GG~i~~~~~~ 331 (483)
.+.|+++|.++|++||+++|+|.. +++|.+.. ...++ +|++++| +|. ++ +.+||+++++++
T Consensus 210 ~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~-----~~~~g-----~D~~~~s-~kk~~~~~~~~Gp~~G~l~~~~~~ 278 (438)
T 1wyu_A 210 ALEDLGPFAEAAHGAGALFVAVADPLSLGVLKP-----PGAYG-----ADIAVGD-GQSLGLPMGFGGPHFGFLATKKAF 278 (438)
T ss_dssp BCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCC-----HHHHT-----CSEEEEE-CTTTTCCCGGGCSCCEEEEECGGG
T ss_pred EEecHHHHHHHHHHcCCEEEEEechhhccCcCC-----CccCC-----CCEEEEC-CcccCCCccCCCCCeeEEEEcHHH
Confidence 999999999999999999997743 55554322 11222 3888888 564 33 334899888887
Q ss_pred HHHHHhcC----------Cceee------------cCCC-----cHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHH
Q 011567 332 VDHQRLSS----------SGYVF------------SASL-----PPYLASAAITAIDVLEE--NPDLITKLKKNTAILRT 382 (483)
Q Consensus 332 ~~~~~~~~----------~~~~f------------s~~~-----~p~~~aaa~~al~~l~~--~~~~~~~l~~~~~~l~~ 382 (483)
.+.+.... ..|.+ .++. +.+.+.++...+..+.. .+++.++.+++++++.+
T Consensus 279 ~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~ 358 (438)
T 1wyu_A 279 VRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHA 358 (438)
T ss_dssp GGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 76542110 11222 1111 22222222222443322 24577888999999999
Q ss_pred hhccCCCceeecCC-CCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEE--EeecccccccCCCCCceEEEccCCC
Q 011567 383 GLSDIHGLSIASNP-ESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV--VTSKRSMLDKCRLPVGIRLFVSAAH 459 (483)
Q Consensus 383 ~L~~~~~~~i~~~~-~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v--~~~~~~~~~~~~~~~~lRi~~~~~~ 459 (483)
.|++++|+++..+. ...++.+.+. . ...++++++++ +||.+ .+..+.. +..+|++++..+
T Consensus 359 ~L~~~~g~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~L~~-~gi~v~~~~~~~~~------~~~lRis~~~~~ 421 (438)
T 1wyu_A 359 LLLEVPGVRPFTPKPFFNEFALALP--K--------DPEAVRRALAE-RGFHGATPVPREYG------ENLALFAATELH 421 (438)
T ss_dssp HHTTSTTCEECSCSSBCSEEEEECS--S--------CHHHHHHHHHH-TTCCCCEECCTTSC------SSEEEEECCTTC
T ss_pred HHhcCCCeEECCCCCeEEEEEEeCC--C--------CHHHHHHHHHH-CCceeccccccccC------CCeEEEEecccC
Confidence 99998899887542 1222334331 0 12357776555 59988 4333211 345999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 011567 460 SEADLVKACESLKRIS 475 (483)
Q Consensus 460 t~edi~~~~~~l~~~~ 475 (483)
|++|+++++++|++++
T Consensus 422 t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 422 EEEDLLALREALKEVL 437 (438)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998764
No 229
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.83 E-value=1.6e-19 Score=180.01 Aligned_cols=315 Identities=14% Similarity=0.121 Sum_probs=203.8
Q ss_pred CChHHHHHHHHHHHhc-CCCCCCCC-Cccc--ChHHHHHHHHHHHhhhCCC--CEEEe--cccHHHHHhhhhhhccC--C
Q 011567 124 GHEKLLESCTSALEKY-GVGSCGPR-GFYG--TIDVHLDCEARIAKFLGTP--DSILY--SYGLSTMFSAIPCFCKK--G 193 (483)
Q Consensus 124 ~~p~i~~a~~~~l~~~-g~g~~~~~-~~~g--~~~~~~~l~~~La~~~g~e--~~i~~--~sG~~a~~~ai~~~~~~--g 193 (483)
-+++|.+++.+.+.++ +.+++... ...+ ..+...+.++.|++++|.+ ..++| ++|++++..++..+.++ |
T Consensus 24 ~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~~~G 103 (377)
T 3e77_A 24 LPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAG 103 (377)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGGSTT
T ss_pred CCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCCCCC
Confidence 5689999999988764 33322110 0111 1357788999999999975 33444 57889999999888754 7
Q ss_pred cEEEEcCCchhHHH--hHhhhcCCeEEEecCC-----CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHH
Q 011567 194 DLIVADEGVHWGIQ--NGLYLSRSTVVYFKHN-----DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDE 266 (483)
Q Consensus 194 diI~~~~~~h~s~~--~g~~~s~~~v~~~~~~-----d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~ 266 (483)
|.++.-...|++.. .-++..|..+..++.+ ++++++..+ .+ ++++|.+.+..+.+|.+.|+
T Consensus 104 d~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i---~~-------~t~lV~~~h~et~tG~~~pi-- 171 (377)
T 3e77_A 104 RCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNL---NP-------DASYVYYCANETVHGVEFDF-- 171 (377)
T ss_dssp CEEEECCCSHHHHHHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCC---CT-------TCSCEEEESEETTTTEECSS--
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCceEEeccCCCcCCCCChHHhcc---CC-------CccEEEEeCccCchheEchh--
Confidence 87665544455432 2223335455444432 333332211 11 35666676666678999998
Q ss_pred HHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccHHHHHHHHhc-------
Q 011567 267 LIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSARVVDHQRLS------- 338 (483)
Q Consensus 267 l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~~~~~~~~~~------- 338 (483)
+|+++|+++++|.++++|... +++ ++.|++++|.+|++|+.| |+++.++++.+.+...
T Consensus 172 ---i~~~~~~~~~vD~~q~~g~~~---------id~--~~~~~~~~s~~K~~gp~G~g~l~~~~~~l~~~~~~~p~~~~~ 237 (377)
T 3e77_A 172 ---IPDVKGAVLVCDMSSNFLSKP---------VDV--SKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEY 237 (377)
T ss_dssp ---CCCCTTCCEEEECTTTTTSSC---------CCG--GGCSEEEEEGGGTTSCTTCEEEEEETTSCSCCCTTSCGGGCH
T ss_pred ---hhccCCCEEEEEcccccCCCC---------Cch--hhcCEEEEecccccCCCccEEEEEcHHHHhhccCCCCchhhH
Confidence 588999999999999987542 233 344667889999999877 7776666543221110
Q ss_pred ----CCceeecCCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhhccCCCceeec-C--CCCC-EEEEEecC
Q 011567 339 ----SSGYVFSASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGLSIAS-N--PESP-IVFLILEK 407 (483)
Q Consensus 339 ----~~~~~fs~~~~p~~~aaa~~al~~l~~~---~~~~~~l~~~~~~l~~~L~~~~~~~i~~-~--~~~~-i~~l~l~~ 407 (483)
..+..+ .+.|...+.+..++++++.+. +.+.++.+++.++++++|++++|+.+.. + ..++ ++.+.++.
T Consensus 238 ~~~~~~~~~~-~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~ 316 (377)
T 3e77_A 238 KVQAGNSSLY-NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGN 316 (377)
T ss_dssp HHHHTTTTCS-SCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESS
T ss_pred HHHhhcCCCC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCC
Confidence 011112 234555566677889988654 5688899999999999999988887532 1 2455 58888854
Q ss_pred CCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHH
Q 011567 408 STGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAV 477 (483)
Q Consensus 408 ~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 477 (483)
... +......+.+.+. ++||.+..+... .+++|+++...+|++|||+++++|++++++
T Consensus 317 ~~~----~~~~~~~~l~~l~-~~Gi~~~~g~~~-------~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 317 AKG----DDALEKRFLDKAL-ELNMLSLKGHRS-------VGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp TTC----CHHHHHHHHHHHH-HTTEESCBCCTT-------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCC----chhHHHHHHHHHH-HCCcEEeCCCCc-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 211 1111134555443 569988654321 256999999999999999999999998875
No 230
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.83 E-value=3.9e-20 Score=188.83 Aligned_cols=324 Identities=10% Similarity=-0.038 Sum_probs=211.4
Q ss_pred ECCeeEEEeecCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcc-cChHHHHHHHHHHHhhhC------C--CCEEEec
Q 011567 106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFY-GTIDVHLDCEARIAKFLG------T--PDSILYS 176 (483)
Q Consensus 106 ~~G~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~g~g~~~~~~~~-g~~~~~~~l~~~La~~~g------~--e~~i~~~ 176 (483)
.+.+.++||..+.+ .+..++.+.+++.+.+...+....+..... | .....+|++.+|++++ . ++.++++
T Consensus 53 ~~~~~~i~l~~g~~-~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G-~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~ 130 (427)
T 2hox_A 53 KIQGCSADVASGDG-LFLEEYWKQHKEASAVLVSPWHRMSYFFNPVS-NFISFELEKTIKELHEVVGNAAAKDRYIVFGV 130 (427)
T ss_dssp ECTTCCEECCSCCC-GGGHHHHTTSHHHHCEEECTTTTCSSSCSSCC-TTCCHHHHHHHHHHHHHHTCBCCTTCEEEEES
T ss_pred cCCCceEEecCcCC-CCCCCHHHHHhHHhhhhcCCcccccCCCCCCC-ccchHHHHHHHHHHHHHhCCcCCCCCEEEEeC
Confidence 34556788887743 222335566676666643333210011011 2 1124678888888875 2 3455556
Q ss_pred ccHHHHHhhhhhh--------ccCCcEEEEcCCchhHHHhHhhhcCCeEEEecCCCHHHHHHHHHHhhhhhhhccCccEE
Q 011567 177 YGLSTMFSAIPCF--------CKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRY 248 (483)
Q Consensus 177 sG~~a~~~ai~~~--------~~~gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~~d~~~Le~~l~~~~~~~~~~~~~~~~ 248 (483)
++++++..++.++ .++||.|+++.++|..+...++..|.+++.+.. |+++|++.++. ++++
T Consensus 131 G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~~l~~~~~~----------~~k~ 199 (427)
T 2hox_A 131 GVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAG-NAANYVNVSNP----------EQYI 199 (427)
T ss_dssp HHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEEEE-EGGGGTTCSCG----------GGEE
T ss_pred CHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeeeecC-CHHHHHHhhcC----------CceE
Confidence 7779999999999 899999999999999999988888888776643 67777655432 2567
Q ss_pred EEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC---cee
Q 011567 249 IVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFC 325 (483)
Q Consensus 249 iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i 325 (483)
|++..++|++|.+.+ + +++ ++..+.|+++- .. ...+ ..+. .+.||+++||||.+|..| ||+
T Consensus 200 v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~----~~-~~s~---~~~~-~~~~i~~~S~SK~~g~~G~RiG~~ 263 (427)
T 2hox_A 200 EMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYY----WP-HYTP---IKYK-ADEDILLFTMSKFTGHSGSRFGWA 263 (427)
T ss_dssp EEEESSCTTTCCCCC-C----SST--TCEEEEECTTC----ST-TTSC---CCSC-BCCSEEEEEHHHHTSCGGGCCEEE
T ss_pred EEEcCCCCCcccccH-H----HHc--CCCEEEeeccc----CC-CCCc---cccC-CCceEEEEeChhcCCCCCceEEEE
Confidence 777788889999999 4 233 56788888762 11 1111 1222 345899999999998666 999
Q ss_pred ec-cHHHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-----------c-CcHHHHHHHHHHHHHHHhhccCCCcee
Q 011567 326 TG-SARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-----------E-NPDLITKLKKNTAILRTGLSDIHGLSI 392 (483)
Q Consensus 326 ~~-~~~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-----------~-~~~~~~~l~~~~~~l~~~L~~~~~~~i 392 (483)
++ ++++++.++...... ..+.++....++.++|+... + ..+.+++++++.+++.+.|++.+|+.+
T Consensus 264 ~~~~~~l~~~l~~~~~~~--~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 341 (427)
T 2hox_A 264 LIKDESVYNNLLNYMTKN--TEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSY 341 (427)
T ss_dssp EECCHHHHHHHHHHHHHH--TSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEEC
T ss_pred EECCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 88 588888776542221 12345555555556665421 1 124567888899999999988767654
Q ss_pred --e------------cCCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCC
Q 011567 393 --A------------SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAA 458 (483)
Q Consensus 393 --~------------~~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~ 458 (483)
. .+..+.++++.++.. ..+++..+++++||.+.++..... .+..+|+++..
T Consensus 342 ~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~----------~~~~~~~ll~~~gI~v~pg~~f~~----~~~~~Ris~~~- 406 (427)
T 2hox_A 342 QELPQSEYCNYFRRMRPPSPSYAWVKCEWE----------EDKDCYQTFQNGRINTQNGVGFEA----SSRYVRLSLIK- 406 (427)
T ss_dssp CCCCSCEEETTTTEEECCCCSEEEEEECSG----------GGCSHHHHHHHTTEECEEGGGGTS----CTTEEEEECSS-
T ss_pred cccccccccccccccCCCCceEEEEECCCc----------HHHHHHHHHHHCCEEEcCCCccCC----CCCEEEEEecC-
Confidence 1 122367788887431 113566667667999998754321 13459999974
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 011567 459 HSEADLVKACESLKRISA 476 (483)
Q Consensus 459 ~t~edi~~~~~~l~~~~~ 476 (483)
++++++++++.|+++++
T Consensus 407 -~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 407 -TQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp -CHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHHHh
Confidence 89999999999988763
No 231
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.81 E-value=4.4e-18 Score=168.50 Aligned_cols=337 Identities=16% Similarity=0.158 Sum_probs=210.6
Q ss_pred eEEEeecC-CCCCCCCChHHHHHHHHHHH-hcCCCCCCCCCcccCh--HHHHHH-HHHHHhhhCCCCE-----EEecccH
Q 011567 110 EVVNFASA-NYLGLIGHEKLLESCTSALE-KYGVGSCGPRGFYGTI--DVHLDC-EARIAKFLGTPDS-----ILYSYGL 179 (483)
Q Consensus 110 ~~id~~s~-~~lG~~~~p~i~~a~~~~l~-~~g~g~~~~~~~~g~~--~~~~~l-~~~La~~~g~e~~-----i~~~sG~ 179 (483)
+-|++..+ || ..|.+.++.-..+. +|.-|.+|.|.+.|.. |..+.| .++..++||.+.+ +-.-||+
T Consensus 55 ~~ieLIASEN~----~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs 130 (490)
T 3ou5_A 55 RGLELIASENF----CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGS 130 (490)
T ss_dssp HSEECCTTCCC----CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH
T ss_pred cCceEecCCCc----CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHH
Confidence 45777665 66 56889888877775 5888999988655542 333333 3556678998865 4558999
Q ss_pred HHHHhhhhhhccCCcEEEEcCCchhHHHh-H-------hhhcCCe--EEEecC------CCHHHHHHHHHHhhhhhhhcc
Q 011567 180 STMFSAIPCFCKKGDLIVADEGVHWGIQN-G-------LYLSRST--VVYFKH------NDMDSLRNTLERVTADNKRAK 243 (483)
Q Consensus 180 ~a~~~ai~~~~~~gdiI~~~~~~h~s~~~-g-------~~~s~~~--v~~~~~------~d~~~Le~~l~~~~~~~~~~~ 243 (483)
.||.++..++.+|||.|+.-...|+.... | +..++.. .+.++. -|++.++++.++..
T Consensus 131 ~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~k------- 203 (490)
T 3ou5_A 131 PANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFR------- 203 (490)
T ss_dssp HHHHHHHHHHCC-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcC-------
Confidence 99999999999999999977766655331 1 2233322 222221 18999999888765
Q ss_pred CccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccc-cCCC
Q 011567 244 KLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEG 322 (483)
Q Consensus 244 ~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~l-g~~G 322 (483)
.++|++-. +..-...|.++++++|++.|.+|++|-+|-.|.+. .|..+ + +-...|++++|.+|+| |+.|
T Consensus 204 --PklIi~G~--SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA---~g~~p--s-P~~~ADvVTtTTHKTLrGPrG 273 (490)
T 3ou5_A 204 --PRLIIAGT--SAYARLIDYARMREVCDEVKAHLLADMAHISGLVA---AKVIP--S-PFKHADIVTTTTHKTLRGARS 273 (490)
T ss_dssp --CSEEEECC--SSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHH---TTSSC--C-GGGTCSEEEEESSSTTCSCSC
T ss_pred --CCeEEECC--ccCccccCHHHHHHHHhhcccEEEechhhhhhhhc---ccccC--C-ccccceEEeccccccccCCCc
Confidence 45776643 22245568999999999999999999999777653 12211 1 1123599999999999 6889
Q ss_pred ceeeccH---------------HHHHHHHhcCCceeecCCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhcc
Q 011567 323 GFCTGSA---------------RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSD 386 (483)
Q Consensus 323 G~i~~~~---------------~~~~~~~~~~~~~~fs~~~~p~~~aaa~~al~~l~-~~~~~~~~l~~~~~~l~~~L~~ 386 (483)
|++++++ ++.+.+...-.+...++......++-|.+..+.+. +..+..+++.+|++.|.+.|.+
T Consensus 274 G~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~ 353 (490)
T 3ou5_A 274 GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE 353 (490)
T ss_dssp EEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Confidence 9998765 34444433322223333333444444443344343 2346788899999999999988
Q ss_pred CCCceeec-CCCCCEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEcc----CCCCH
Q 011567 387 IHGLSIAS-NPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVS----AAHSE 461 (483)
Q Consensus 387 ~~~~~i~~-~~~~~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~----~~~t~ 461 (483)
. |+++.+ ..++.++.+.+.+... + .+-+...|++.||.+.....|.-.....+.||||..+ ..+.+
T Consensus 354 ~-G~~vvsGgTdnHlvLvDl~~~g~----t----G~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e 424 (490)
T 3ou5_A 354 R-GYSLVSGGTDNHLVLVDLRPKGL----D----GARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFRE 424 (490)
T ss_dssp T-TCEEGGGSCSSSEEEEECGGGTC----C----HHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCH
T ss_pred C-CCeeecCCCCceEEEEeccccCC----C----HHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCH
Confidence 5 999875 3467788888754211 1 1334556788899988665543322224678999654 35789
Q ss_pred HHHHHHHHHHHHHHH
Q 011567 462 ADLVKACESLKRISA 476 (483)
Q Consensus 462 edi~~~~~~l~~~~~ 476 (483)
+|++++.+.|.+++.
T Consensus 425 ~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 425 DDFRRVVDFIDEGVN 439 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988774
No 232
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.80 E-value=1.1e-17 Score=166.15 Aligned_cols=318 Identities=13% Similarity=0.099 Sum_probs=205.4
Q ss_pred eeEEEeecCCCCCCCCChHHHHHHHHHHHhc-CCCCCCCC-Cccc--ChHHHHHHHHHHHhhhCCC---CEEE-ecccHH
Q 011567 109 KEVVNFASANYLGLIGHEKLLESCTSALEKY-GVGSCGPR-GFYG--TIDVHLDCEARIAKFLGTP---DSIL-YSYGLS 180 (483)
Q Consensus 109 ~~~id~~s~~~lG~~~~p~i~~a~~~~l~~~-g~g~~~~~-~~~g--~~~~~~~l~~~La~~~g~e---~~i~-~~sG~~ 180 (483)
+++++|..+. -.-+|+|.+++.+.+..+ +.+++..+ ...+ ..+...+.++.+++++|.+ +.++ .++|++
T Consensus 4 ~~~~~f~pgp---t~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~ 80 (361)
T 3m5u_A 4 MRKINFSAGP---STLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASL 80 (361)
T ss_dssp CCCEECCSSS---CCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHH
T ss_pred cceEeecCCC---CCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHH
Confidence 3556666541 124689999998887654 33222110 0111 1357788999999999974 3444 477889
Q ss_pred HHHhhhhhhccCCcE---EEEcCCchhHHHhHhhhcCCeEEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567 181 TMFSAIPCFCKKGDL---IVADEGVHWGIQNGLYLSRSTVVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIV 250 (483)
Q Consensus 181 a~~~ai~~~~~~gdi---I~~~~~~h~s~~~g~~~s~~~v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv 250 (483)
++..++..+. ++|. |+.....|... ..++..|.++..++.+ +++. + | .+ ++++|.
T Consensus 81 a~n~~~~~~~-~~~~~~~i~~~~~~~~~~-~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l---~~-------~t~lv~ 145 (361)
T 3m5u_A 81 QFAMIPMNLA-LNGVCEYANTGVWTKKAI-KEAQILGVNVKTVASSEESNFDHIPRV-E--F---SD-------NADYAY 145 (361)
T ss_dssp HHHHHHHHHC-CSSCEEEEECSHHHHHHH-HHHHHTTCCEEEEEECTTTTSCSCCCC-C--C---CT-------TSSEEE
T ss_pred HHHHHHHhcC-CCCeEEEEeCCHHHHHHH-HHHHHcCCceEEEecccCcCCCcCChh-h--c---CC-------CCCEEE
Confidence 9999988877 6662 33322223222 2233446666665432 2232 2 2 22 256777
Q ss_pred EecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeeccH
Q 011567 251 VEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGSA 329 (483)
Q Consensus 251 ~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~~ 329 (483)
+.+..+.+|.+.|. +++ +|+++++|.++++|.+. +++ +++|++++|.+|++|+.| |+++.++
T Consensus 146 ~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~---------id~--~~~d~~~~s~~K~~gp~G~g~l~~~~ 208 (361)
T 3m5u_A 146 ICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRK---------VDF--SNIALFYGGVQKNAGISGLSCIFIRK 208 (361)
T ss_dssp EESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSC---------CCC--TTEEEEEEETTTTSSCTTCEEEEEEH
T ss_pred EeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCC---------CCc--ccCCEEEEechhccCCCccEEEEEcH
Confidence 76666677988662 444 49999999999987542 333 468999999999999877 8888888
Q ss_pred HHHHHHHh-cCC-----------ceeecCCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhhccCCCc-eee
Q 011567 330 RVVDHQRL-SSS-----------GYVFSASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGL-SIA 393 (483)
Q Consensus 330 ~~~~~~~~-~~~-----------~~~fs~~~~p~~~aaa~~al~~l~~~---~~~~~~l~~~~~~l~~~L~~~~~~-~i~ 393 (483)
++.+.+.. ... +..+ .+.|...+.+..++++++.+. +.+.++.+++.++++++|++++++ .+.
T Consensus 209 ~~~~~~~~~~~p~~~~~~~~~~~~~~~-~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~ 287 (361)
T 3m5u_A 209 DMLERSKNKQIPSMLNYLTHAENQSLF-NTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGH 287 (361)
T ss_dssp HHHHHHHTCCCCGGGCHHHHHHTTTCS-SCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEES
T ss_pred HHHhhhcCCCCCceeehHHHhhcCCCC-CCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeecc
Confidence 88766543 111 1111 234555666777889988654 567888999999999999998656 443
Q ss_pred cC--CCC-CEEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHH
Q 011567 394 SN--PES-PIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACES 470 (483)
Q Consensus 394 ~~--~~~-~i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~ 470 (483)
.+ ..+ .++.+.+++..+ .+ .++.. .|+++||.+..+... ..++|+++...+|++|||+++++
T Consensus 288 ~~~~~rs~~ivsf~~~~~~~---~~----~~~~~-~L~~~gI~~~~g~~~-------~g~iRiS~~~~~t~edId~l~~a 352 (361)
T 3m5u_A 288 ADKKDRSLMNVSFNIAKNKD---LE----PLFVK-EAEEAGMIGLKGHRI-------LGGIRASIYNALNLDQVKTLCEF 352 (361)
T ss_dssp SCGGGBCSSEEEEEESSCTT---HH----HHHHH-HHHHTTEECCBCCTT-------TCSEEEECCTTSCHHHHHHHHHH
T ss_pred CCHHHcCCeEEEEECCCchh---hh----HHHHH-HHHHCCCEEecCCCc-------cCeEEEEccCCCCHHHHHHHHHH
Confidence 22 234 478888753100 11 23554 356679998654321 24599999999999999999999
Q ss_pred HHHHHHH
Q 011567 471 LKRISAV 477 (483)
Q Consensus 471 l~~~~~~ 477 (483)
|+++.++
T Consensus 353 l~~~~~~ 359 (361)
T 3m5u_A 353 MKEFQGK 359 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998765
No 233
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.78 E-value=7.5e-19 Score=176.02 Aligned_cols=318 Identities=11% Similarity=0.061 Sum_probs=193.5
Q ss_pred eEEEeecCCCCCCCCChHHHHHHHHHHHhc-CCCCCC----CCCcccChHHHHHHHHHHHhhhCCCC---EEEe-cccHH
Q 011567 110 EVVNFASANYLGLIGHEKLLESCTSALEKY-GVGSCG----PRGFYGTIDVHLDCEARIAKFLGTPD---SILY-SYGLS 180 (483)
Q Consensus 110 ~~id~~s~~~lG~~~~p~i~~a~~~~l~~~-g~g~~~----~~~~~g~~~~~~~l~~~La~~~g~e~---~i~~-~sG~~ 180 (483)
.|+|-+.... -+|+|.+++.+.+..+ +.+++. .+. .-..+...+.++.+++++|.++ .+++ ++|++
T Consensus 28 ~yl~~agpt~----~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~-~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~ 102 (386)
T 3qm2_A 28 VFNFSSGPAM----LPAEVLKLAQQELCDWHGLGTSVMEISHRG-KEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRG 102 (386)
T ss_dssp CEECCSSSCC----CCHHHHHHHTCC------------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTH
T ss_pred CccccCCCCC----CCHHHHHHHHHHHHhccccCccccccCCCC-HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchH
Confidence 4555444322 4689999988877653 333221 111 0012456789999999999752 4453 68899
Q ss_pred HHHhhhhhhccCCcEEEEcCCchhHH--HhHhhhcCCeEEEecCC--------CHHHHHHHHHHhhhhhhhccCccEEEE
Q 011567 181 TMFSAIPCFCKKGDLIVADEGVHWGI--QNGLYLSRSTVVYFKHN--------DMDSLRNTLERVTADNKRAKKLRRYIV 250 (483)
Q Consensus 181 a~~~ai~~~~~~gdiI~~~~~~h~s~--~~g~~~s~~~v~~~~~~--------d~~~Le~~l~~~~~~~~~~~~~~~~iv 250 (483)
++..++..+.++||.++.-...|++. ...++..| .+..++.+ |+++++..+. + ++++|.
T Consensus 103 a~n~ai~~l~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~---~-------~t~lV~ 171 (386)
T 3qm2_A 103 QFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLS---D-------NAAYLH 171 (386)
T ss_dssp HHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCC---T-------TCSCEE
T ss_pred HHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcC---C-------CCcEEE
Confidence 99999998888888654322223332 12223345 56555432 2344433221 1 356777
Q ss_pred EecccCCCCCc-cChHHHHHHHHHcCcEEEEeCccccccccCCCCccccccCCCCCceeEEEccccccccCCC-ceeecc
Q 011567 251 VEAVYQNSGQI-APLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG-GFCTGS 328 (483)
Q Consensus 251 ~e~v~~~~G~i-~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~~~~~v~~~~~Di~~~s~~K~lg~~G-G~i~~~ 328 (483)
+..+.+.+|.+ .|+++|. +|+++++|.++++|.+. .++ ++.|++++|.+|++|+.| |++..+
T Consensus 172 ~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~p---------idv--~~~~~~~~s~hK~lGP~G~g~l~v~ 235 (386)
T 3qm2_A 172 YCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAP---------LDV--SRYGVIYAGAQKNIGPAGLTLVIVR 235 (386)
T ss_dssp ECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSC---------CCG--GGCSEEEEETTTTTCCTTEEEEEEE
T ss_pred EECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCC---------CCc--cccCEEEEecccccCCCccEEEEEC
Confidence 77777778995 8998885 89999999999987542 233 334566789999999877 887777
Q ss_pred HHHHHHHHh-----------cCCceeecCCCcHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhhccCCCc-eee
Q 011567 329 ARVVDHQRL-----------SSSGYVFSASLPPYLASAAITAIDVLEEN---PDLITKLKKNTAILRTGLSDIHGL-SIA 393 (483)
Q Consensus 329 ~~~~~~~~~-----------~~~~~~fs~~~~p~~~aaa~~al~~l~~~---~~~~~~l~~~~~~l~~~L~~~~~~-~i~ 393 (483)
+++.+.+.. ...+..+. +.|.....+..++++++.+. +++.++.+++.+++++.|+++ ++ ...
T Consensus 236 ~~~~~~~~~~~p~~~~~~~~~~~~~~~g-Tp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~ 313 (386)
T 3qm2_A 236 EDLLGKAHESCPSILDYTVLNDNDSMFN-TPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRND 313 (386)
T ss_dssp GGGCSCCCTTSCGGGCHHHHHHC--------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECC
T ss_pred HHHHhhhcccCCcHHHHHHHhhcCCCCC-CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccC
Confidence 665322111 01112222 23434455566778877542 567888999999999999887 54 221
Q ss_pred --cCCCCC-EEEEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHH
Q 011567 394 --SNPESP-IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACES 470 (483)
Q Consensus 394 --~~~~~~-i~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~ 470 (483)
....++ ++.+.+++. ..+ .++... |+++||.+..+... .+++|+++...+|++|||+++++
T Consensus 314 ~~~~~rs~~iv~f~~~~~----~~~----~~~~~~-L~~~gI~~~~g~~~-------~~~iRiS~~~~~t~edId~l~~~ 377 (386)
T 3qm2_A 314 VAQANRSRMNVPFQLADN----TLD----KVFLEE-SFAAGLHALKGHRV-------VGGMRASIYNAMPIEGVKALTDF 377 (386)
T ss_dssp BCGGGBCSSEEEEEESSG----GGH----HHHHHH-HHHTTEECCBCCTT-------TCSEEEECCTTSCHHHHHHHHHH
T ss_pred CCHHHcCceEEEEECCCc----ccc----HHHHHH-HHHCCCEEeCCCCC-------cCeEEEEcCCCCCHHHHHHHHHH
Confidence 112344 788888531 011 234554 56679987654322 24599999999999999999999
Q ss_pred HHHHHHH
Q 011567 471 LKRISAV 477 (483)
Q Consensus 471 l~~~~~~ 477 (483)
|+++.++
T Consensus 378 l~~~~~~ 384 (386)
T 3qm2_A 378 MIDFERR 384 (386)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998765
No 234
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.75 E-value=3.4e-17 Score=165.82 Aligned_cols=311 Identities=9% Similarity=0.033 Sum_probs=186.1
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCcccChHHHHHHHHHHHhhh-CC----CC--EEEecccHHHHHhh----hhhhccCCc
Q 011567 126 EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFL-GT----PD--SILYSYGLSTMFSA----IPCFCKKGD 194 (483)
Q Consensus 126 p~i~~a~~~~l~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~-g~----e~--~i~~~sG~~a~~~a----i~~~~~~gd 194 (483)
|.|++|....++.-...... ...|. .+|++.+++++ |. +. .+...+|+.|+..+ .+++..+||
T Consensus 65 ~~Vk~A~~~~~~~~~~~~Y~--p~~G~----p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd 138 (420)
T 4h51_A 65 RVVRKAEQLLLDMNLDYEYL--PISGY----QPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETT 138 (420)
T ss_dssp HHHHHHHHHHHHTTCCCCCC--CTTCC----HHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTS
T ss_pred HHHHHHHHHHhcCCCCCCCC--CcCCh----HHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCC
Confidence 66777766666542221111 13343 45666666653 32 12 23346666665444 456678999
Q ss_pred EEEEcCCchhHHHhHhhhcCCe-EEEecCC-------CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC---
Q 011567 195 LIVADEGVHWGIQNGLYLSRST-VVYFKHN-------DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP--- 263 (483)
Q Consensus 195 iI~~~~~~h~s~~~g~~~s~~~-v~~~~~~-------d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~--- 263 (483)
.|+++++++..+...++..|.+ +..+++. |.+.+.+.++...+ .+++++....+|+||...+
T Consensus 139 ~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~-------~~~vll~~~p~NPtG~~~~~~~ 211 (420)
T 4h51_A 139 PIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPD-------GSVFILHQCAHNPTGVDPSQEQ 211 (420)
T ss_dssp CEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCS-------SCEEEEESSSCTTTCCCCCHHH
T ss_pred EEEEecCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccCC-------CcEEEEeCCCCCCCCCCCCHHH
Confidence 9999999999988888888875 4444332 56666666655433 4678888888999999988
Q ss_pred hHHHHHHHHHcCcEEEEeCccccccccCCCCcc-ccccCCCCCceeEEEccccccccCCC---ceeeccHHHHHH-----
Q 011567 264 LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVVDH----- 334 (483)
Q Consensus 264 L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~-~~~~~v~~~~~Di~~~s~~K~lg~~G---G~i~~~~~~~~~----- 334 (483)
+++|+++|+++++++|.||+|.....|...... ......+....-+++.|+||+++..| |++++.....+.
T Consensus 212 ~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~ 291 (420)
T 4h51_A 212 WNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVK 291 (420)
T ss_dssp HHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHH
T ss_pred HHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHHHH
Confidence 799999999999999999999865544210000 00000011122477899999998766 887654332221
Q ss_pred --HHhcCCceeecCCCcHHHHHHHHHHHHH-------HhcCcHHHHHHHHHHHHHHHhhccCCC----ceeecCCCCCEE
Q 011567 335 --QRLSSSGYVFSASLPPYLASAAITAIDV-------LEENPDLITKLKKNTAILRTGLSDIHG----LSIASNPESPIV 401 (483)
Q Consensus 335 --~~~~~~~~~fs~~~~p~~~aaa~~al~~-------l~~~~~~~~~l~~~~~~l~~~L~~~~~----~~i~~~~~~~i~ 401 (483)
+.... ...++ +.|...+.++...+.. .++...++++++++++.|.+.|+++ | +....++.+.+.
T Consensus 292 ~~l~~~~-r~~~s-~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~-g~~~~~~~i~~q~GmF~ 368 (420)
T 4h51_A 292 SVMDSLI-REEYT-CPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRL-QTPGSWEHVINQIGMFS 368 (420)
T ss_dssp HHHHHHH-HTTTS-SCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSCCTHHHHCCSSEE
T ss_pred HHHHHhh-hcccC-cchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCCeecCCCceEE
Confidence 11111 11122 2234444444333321 1122356778888888888888775 3 222223345444
Q ss_pred EEEecCCCCCchhhHHHHHHHHHHHHHhCCEEEEeecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567 402 FLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 402 ~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv~v~~~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~ 480 (483)
++.+. . +.++ .|+++||++.+ +-||++.. .|++.|++++++|.++++++.+
T Consensus 369 ~~gls--------~-----e~v~-~L~e~~Vy~~~-------------~gRis~Ag-l~~~ni~~~a~aI~~vvr~i~r 419 (420)
T 4h51_A 369 FLGLS--------K-----AQCE-YCQNHNIFITV-------------SGRANMAG-LTHETALMLAQTINDAVRNVNR 419 (420)
T ss_dssp ECCCC--------H-----HHHH-HHHHTTEECCT-------------TCEEEGGG-CCHHHHHHHHHHHHHHHC----
T ss_pred ecCcC--------H-----HHHH-HHHhCCEEEcC-------------CCEEEecc-CCHHHHHHHHHHHHHHHHHhhc
Confidence 43331 1 1234 46678998753 24999854 7899999999999999988654
No 235
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.71 E-value=2.2e-15 Score=151.92 Aligned_cols=386 Identities=11% Similarity=0.076 Sum_probs=215.1
Q ss_pred CCCCCCCCHHHHHHHHhhcCCCCCCcccccccccCCCccccCCCCeEEECCeeEEEeecCCCCCCCCChH-HHHHHHHHH
Q 011567 58 KPPKRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEK-LLESCTSAL 136 (483)
Q Consensus 58 ~~~~~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~G~~~id~~s~~~lG~~~~p~-i~~a~~~~l 136 (483)
+-++.-+++++|..+++++...+..- .....-+-. -+||-+=.+++..|+|+ .|+- +.. +.+
T Consensus 22 ~~p~~g~~~~~i~~~l~~~~~~d~~~------~~~~~~~ge-------regrv~~~~~~~r~~g~-~hg~~~~~---d~l 84 (450)
T 3bc8_A 22 KCPEDGWDESTLELFLHELAVMDSNN------FLGNCGVGE-------REGRVASALVARRHYRF-IHGIGRSG---DIS 84 (450)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHTBGGG------CTTCCCCSS-------CCCCCSCHHHHHHTTTC-CSCBCC--------
T ss_pred cCCccCCCHHHHHHHHHHHhhCCCCc------cccccccCc-------ccceEecccccCCccce-ecchhHHH---HHH
Confidence 45566899999999888865422110 000000100 13454555555577787 3432 111 222
Q ss_pred HhcCCCCCCCCCcccChHHHHHHHHHHHhhhCCCCE---EEecccHHHHHhhhhhhcc----CCcEEEEcCCchhHHHhH
Q 011567 137 EKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDS---ILYSYGLSTMFSAIPCFCK----KGDLIVADEGVHWGIQNG 209 (483)
Q Consensus 137 ~~~g~g~~~~~~~~g~~~~~~~l~~~La~~~g~e~~---i~~~sG~~a~~~ai~~~~~----~gdiI~~~~~~h~s~~~g 209 (483)
.... ...+ ..+...+...+..++.+++|.+++ +++++++..+.+++.+.++ +++.|++.+..|.|+.++
T Consensus 85 ~~~~-~~~~---~~~~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kA 160 (450)
T 3bc8_A 85 AVQP-KAAG---SSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKS 160 (450)
T ss_dssp --CC-SBHH---HHHHHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHH
T ss_pred HhCc-cccC---CcHHHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHH
Confidence 2211 1111 111234667888888888897643 5566666344333333322 378888889999999999
Q ss_pred hhhcCCeEEEecC--------CCHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEe
Q 011567 210 LYLSRSTVVYFKH--------NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLD 281 (483)
Q Consensus 210 ~~~s~~~v~~~~~--------~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~D 281 (483)
+.+.|...++++. -|++.|++.+++...+ .+.+|++.+.+...|.+.|+++|+++|++||+++++|
T Consensus 161 l~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~------~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD 234 (450)
T 3bc8_A 161 MVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPE------HILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVN 234 (450)
T ss_dssp HHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGG------GEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEE
T ss_pred HHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCC------CEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEE
Confidence 9999998776643 1899999999876422 3677777777766678999999999999999999999
Q ss_pred CccccccccCCCCccc-cccCCCCCceeEEEcccccccc-CCCc-eee-ccHHHHHHHHhcCCceeecCCCcHH-HHHHH
Q 011567 282 ESNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALA-TEGG-FCT-GSARVVDHQRLSSSGYVFSASLPPY-LASAA 356 (483)
Q Consensus 282 Ea~s~g~lg~~G~g~~-~~~~v~~~~~Di~~~s~~K~lg-~~GG-~i~-~~~~~~~~~~~~~~~~~fs~~~~p~-~~aaa 356 (483)
++|+... .. ...+. +.+.. ..+|+++.|.+|++. +.|| ++. .+++..+..... |....+.+|. .+.+.
T Consensus 235 ~A~G~~~-~~-~~~l~~~a~~~--~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~---~~g~~s~SpsL~l~~~ 307 (450)
T 3bc8_A 235 NAYGLQS-SK-CMHLIQQGARV--GRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKM---YPGRASASPSLDVLIT 307 (450)
T ss_dssp CTTTTTC-HH-HHHHHHHHHHH--SCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHH---SCSCBCSHHHHHHHHH
T ss_pred CCCchhh-hh-hHhHHHHHhcc--cCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHH---hhcCCcccHHHHHHHH
Confidence 9997421 11 01111 11111 245899999999997 3354 443 355555554332 1111122343 22222
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHhhccCC---CceeecCCCCCE-EEEEecCCCCCchhhHHHHHHHHHHHHHhC--
Q 011567 357 ITAIDVLEENPDLITKLKKNTAILRTGLSDIH---GLSIASNPESPI-VFLILEKSTGSMKNDLQLLEDIADWALKED-- 430 (483)
Q Consensus 357 ~~al~~l~~~~~~~~~l~~~~~~l~~~L~~~~---~~~i~~~~~~~i-~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~-- 430 (483)
+.++ -.+...+.+++..++.+++++.|++++ |..+...+..++ ..+.+..-....+.| ..++.-.....+
T Consensus 308 l~~~-G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D---~tkl~i~~~~~g~s 383 (450)
T 3bc8_A 308 LLSL-GCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKA---VTQLGSMLFTRQVS 383 (450)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCH---HHHHHHHHHHTTCC
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCC---CceeEEEecCCCCc
Confidence 2221 011123455555788889999998776 776654332222 122232111000112 123333222221
Q ss_pred CEEEEe------------ecccccccCCCCCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567 431 GVFVVT------------SKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLRD 481 (483)
Q Consensus 431 Gv~v~~------------~~~~~~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~ 481 (483)
|.-+.+ ..|...-.......|-+..+...|++|+++++++|+++.++..++
T Consensus 384 G~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~~ 446 (450)
T 3bc8_A 384 GARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKE 446 (450)
T ss_dssp SCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 333320 111110001112347788899999999999999999998766443
No 236
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.68 E-value=7.2e-15 Score=146.28 Aligned_cols=297 Identities=11% Similarity=0.100 Sum_probs=180.9
Q ss_pred hCCCC---EEEecccHHHHHhhhhhhccC----CcEEEEcCCchhHHHhHhhhcCCeEEEecC---C-----CHHHHHHH
Q 011567 167 LGTPD---SILYSYGLSTMFSAIPCFCKK----GDLIVADEGVHWGIQNGLYLSRSTVVYFKH---N-----DMDSLRNT 231 (483)
Q Consensus 167 ~g~e~---~i~~~sG~~a~~~ai~~~~~~----gdiI~~~~~~h~s~~~g~~~s~~~v~~~~~---~-----d~~~Le~~ 231 (483)
+|.+. .+++++++.++.+++.+.+++ +|.|++++..|.|+.+++.++|...++++. . |++++|+.
T Consensus 129 ~G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~a 208 (501)
T 3hl2_A 129 AGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAK 208 (501)
T ss_dssp TTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTEEEECHHHHHHH
T ss_pred cCCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecccccCCCHHHHHHH
Confidence 37553 344466666777666666553 489999999999999999999998877653 1 78999999
Q ss_pred HHHhhhhhhhccCccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccccccccCCCCccc-cccCCCCCceeEE
Q 011567 232 LERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCGVPVDKIDIV 310 (483)
Q Consensus 232 l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s~g~lg~~G~g~~-~~~~v~~~~~Di~ 310 (483)
+++...+ ...+|++.+.+...+.+.|+++|+++|++||+++++||+|+.-. .. ...+. +.+.. ..+|++
T Consensus 209 I~e~ga~------~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~-~~-~~~lp~sA~~~--GrAD~v 278 (501)
T 3hl2_A 209 VQELGPD------CILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQS-SK-CMHLIQQGARV--GRIDAF 278 (501)
T ss_dssp HHHHCGG------GEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTC-HH-HHHHHHHHHHH--SCCCEE
T ss_pred HHhcCCC------cEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhh-hh-hhhhHHHHHhc--CCCcEE
Confidence 9887432 35666666555444577899999999999999999999997532 10 00111 11111 125999
Q ss_pred Ecccccccc-CCCceee--ccHHHHHHHHhcCCceeecCCCcHHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhcc
Q 011567 311 TAAMGHALA-TEGGFCT--GSARVVDHQRLSSSGYVFSASLPPYL-ASAAITAIDVLEENPDLITKLKKNTAILRTGLSD 386 (483)
Q Consensus 311 ~~s~~K~lg-~~GG~i~--~~~~~~~~~~~~~~~~~fs~~~~p~~-~aaa~~al~~l~~~~~~~~~l~~~~~~l~~~L~~ 386 (483)
+.|.+|.+- ..||.++ .+++.++.+...-. -..+..|.. .-+++..+- .+...+++++..++.++|+++|++
T Consensus 279 VqS~HK~llvpIGG~ii~~~d~e~l~~~~~~yP---Gr~S~Spsldl~~tLL~lG-r~Gy~~ll~e~~ela~~L~~~L~~ 354 (501)
T 3hl2_A 279 VQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYP---GRASASPSLDVLITLLSLG-SNGYKKLLKERKEMFSYLSNQIKK 354 (501)
T ss_dssp EEEHHHHHCCCSSCEEEEESCHHHHHHHHHTSC---SCBCSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccccceeecCceEEEeCCHHHHHHHHHhCC---CCCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999994 4466443 35566665532211 111223333 222221111 012256888889999999999987
Q ss_pred CC---CceeecCCCCCE-EEEEecCCCCCchhhHHHHHHHHHHHHHhCCE---EEEe-ec-----------ccccccCCC
Q 011567 387 IH---GLSIASNPESPI-VFLILEKSTGSMKNDLQLLEDIADWALKEDGV---FVVT-SK-----------RSMLDKCRL 447 (483)
Q Consensus 387 ~~---~~~i~~~~~~~i-~~l~l~~~~~~~~~~~~~~~~i~~~~l~~~Gv---~v~~-~~-----------~~~~~~~~~ 447 (483)
+. |-++...+..|| +.+.+..... ........+-..++. ++| -+.+ .. |.+-....+
T Consensus 355 la~~~ge~ll~~~~n~is~a~tl~~~~~---~~~~~~t~~gs~Lf~-r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~ 430 (501)
T 3hl2_A 355 LSEAYNERLLHTPHNPISLAMTLKTLDE---HRDKAVTQLGSMLFT-RQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYP 430 (501)
T ss_dssp HHHTTTCCBCCCTTCSSEEEEECTTSCT---TTSCHHHHHHHHHHH-TTCCSCEEECTTCCEEETTEEESSTTTTSSCCS
T ss_pred HHHhcChhhcCCCCCceeEEEecccccc---cccccHHHHHHHHHh-cCCCcceeecCCCceEECCeeecCcccCCCCCC
Confidence 53 444544444554 4445533211 111123344443333 344 2221 11 111001112
Q ss_pred CCceEEEccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567 448 PVGIRLFVSAAHSEADLVKACESLKRISAVVLRD 481 (483)
Q Consensus 448 ~~~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~ 481 (483)
.+-+-++....++++|||.+++.|++++.++.++
T Consensus 431 ~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~ 464 (501)
T 3hl2_A 431 CAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKE 464 (501)
T ss_dssp SCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 2448888888999999999999999999887654
No 237
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=48.05 E-value=18 Score=31.67 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=30.5
Q ss_pred ccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEE
Q 011567 245 LRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFL 280 (483)
Q Consensus 245 ~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~ 280 (483)
..+.|++|=+-+..|.+..++++.+++++||+.++.
T Consensus 159 ~Pa~vicEi~~~~dG~mar~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 159 QPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp CSBEEEEEBBCTTTCCBCBHHHHHHHHHHHTCCEEE
T ss_pred CceEEEEEEeECCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 467888886646679999999999999999988763
No 238
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=43.39 E-value=31 Score=30.17 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=30.1
Q ss_pred ccEEEEEecc-cCCCCCccChHHHHHHHHHcCcEEEE
Q 011567 245 LRRYIVVEAV-YQNSGQIAPLDELIRLKEKYRFRVFL 280 (483)
Q Consensus 245 ~~~~iv~e~v-~~~~G~i~~L~~l~~l~~k~~~~li~ 280 (483)
..+.|++|=+ .+..|.+..++++.+++++||+.++.
T Consensus 158 ~Pa~vicEiv~~~~dG~mar~~~l~~fA~~h~l~~it 194 (206)
T 3mio_A 158 QPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALIT 194 (206)
T ss_dssp CSBEEEEEBBCSSSTTSBCCHHHHHHHHHHHTCEEEE
T ss_pred CceEEEEEEeeeCCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 4678888873 44579999999999999999998874
No 239
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=41.17 E-value=30 Score=35.10 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=22.8
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCccc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESNS 285 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~s 285 (483)
|...++++|++-|++.|+.+|+|-+..
T Consensus 90 Gt~~dfk~Lv~~aH~~GI~VilD~V~N 116 (527)
T 1gcy_A 90 GSDAQLRQAASALGGAGVKVLYDVVPN 116 (527)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEeec
Confidence 445558999999999999999998853
No 240
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=39.99 E-value=37 Score=30.01 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=29.5
Q ss_pred ccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEE
Q 011567 245 LRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFL 280 (483)
Q Consensus 245 ~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~ 280 (483)
..+.|++|=+ +..|.+..++++.+++++||+.++-
T Consensus 167 ~Pa~vicEi~-~~dG~mar~~~l~~fA~~h~l~~it 201 (217)
T 1g57_A 167 KPAGVLCELT-NDDGTMARAPECIEFANKHNMALVT 201 (217)
T ss_dssp CSCEEEEEBB-CTTSSBCCHHHHHHHHHHTTCEEEE
T ss_pred CceEEEEEEe-CCCCCccCHHHHHHHHHHcCCCEEE
Confidence 4678888855 5669999999999999999998874
No 241
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=39.72 E-value=1.2e+02 Score=29.34 Aligned_cols=80 Identities=11% Similarity=0.178 Sum_probs=49.7
Q ss_pred hhHHHhHhhhcCCeEEEe-cC-CCHHHHHHHHHHhhhhhhhccCccEEEEEec-ccC--C-CCCccChHHHHHHHHHcCc
Q 011567 203 HWGIQNGLYLSRSTVVYF-KH-NDMDSLRNTLERVTADNKRAKKLRRYIVVEA-VYQ--N-SGQIAPLDELIRLKEKYRF 276 (483)
Q Consensus 203 h~s~~~g~~~s~~~v~~~-~~-~d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~-v~~--~-~G~i~~L~~l~~l~~k~~~ 276 (483)
+..+...+.-.+.++..= .. .++++++..++..... ....+++++- +.+ + +-...+|..|..+++.+++
T Consensus 238 n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~-----Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~~~l 312 (385)
T 3nvt_A 238 NFELLKAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQ-----GNGKIILCERGIRTYEKATRNTLDISAVPILKKETHL 312 (385)
T ss_dssp CHHHHHHHHTSSSCEEEECCTTCCHHHHHHHHHHHHTT-----TCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSS
T ss_pred CHHHHHHHHccCCcEEEecCCCCCHHHHHHHHHHHHHc-----CCCeEEEEECCCCCCCCCCccccCHHHHHHHHHhcCC
Confidence 445555555455444322 12 5777777777665432 1245778874 432 2 1233568999999999999
Q ss_pred EEEEeCccccc
Q 011567 277 RVFLDESNSFG 287 (483)
Q Consensus 277 ~li~DEa~s~g 287 (483)
.+++|-+|+.|
T Consensus 313 pV~~D~th~~G 323 (385)
T 3nvt_A 313 PVMVDVTHSTG 323 (385)
T ss_dssp CEEEEHHHHHC
T ss_pred CEEEcCCCCCC
Confidence 99999988754
No 242
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=37.39 E-value=36 Score=30.25 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=30.0
Q ss_pred ccEEEEEecccCCCCCccChHHHHHHHHHcCcEEEE
Q 011567 245 LRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFL 280 (483)
Q Consensus 245 ~~~~iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~ 280 (483)
..+.|++|=+ +..|.+..++++.+++++||+.++.
T Consensus 178 ~Pa~VicEi~-~ddG~mar~~~l~~fA~~h~l~~it 212 (227)
T 1snn_A 178 VPITTICEMM-GDDGNAMSKNETKRYAEKHNLIYLS 212 (227)
T ss_dssp CSEEEEEEEB-CTTSSBCCHHHHHHHHHHHTCCEEE
T ss_pred CceEEEEEEe-CCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 4788888876 4569999999999999999998874
No 243
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=36.99 E-value=47 Score=21.39 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=23.2
Q ss_pred ceEEEccCCCCHHHHHHHHHHHHHHHHHH
Q 011567 450 GIRLFVSAAHSEADLVKACESLKRISAVV 478 (483)
Q Consensus 450 ~lRi~~~~~~t~edi~~~~~~l~~~~~~~ 478 (483)
.+||++++ -|+++-+++..++-+++.++
T Consensus 3 rvrisita-rtkkeaekfaailikvfael 30 (62)
T 2gjh_A 3 RVRISITA-RTKKEAEKFAAILIKVFAEL 30 (62)
T ss_dssp EEEEEEEC-SSHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEe-cchhHHHHHHHHHHHHHHHh
Confidence 37898876 58999999999998888775
No 244
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=36.08 E-value=1.2e+02 Score=27.60 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHhhhhhhhccCccEEEEEe-c--ccCC-CCCccChHHHHHHHHHcCcEEEEeCccccc
Q 011567 224 DMDSLRNTLERVTADNKRAKKLRRYIVVE-A--VYQN-SGQIAPLDELIRLKEKYRFRVFLDESNSFG 287 (483)
Q Consensus 224 d~~~Le~~l~~~~~~~~~~~~~~~~iv~e-~--v~~~-~G~i~~L~~l~~l~~k~~~~li~DEa~s~g 287 (483)
+++++...++..... ....+++++ + .+++ .-...+|..+..+++.+++.+|.|-.|+.|
T Consensus 142 t~~e~~~Av~~i~~~-----Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~~~pVi~d~sH~~g 204 (262)
T 1zco_A 142 TIQELLYSAEYIMAQ-----GNENVILCERGIRTFETATRFTLDISAVPVVKELSHLPIIVDPSHPAG 204 (262)
T ss_dssp CHHHHHHHHHHHHTT-----TCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECSSTTTC
T ss_pred CHHHHHHHHHHHHHC-----CCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhhCCCEEEEcCCCCC
Confidence 677777666554332 123466666 2 1111 123345889999999999999999999854
No 245
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex, glycosidase, hydrolase; HET: CE6 ACX; 1.65A {Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A* 1h3g_A
Probab=34.87 E-value=37 Score=35.17 Aligned_cols=27 Identities=19% Similarity=0.067 Sum_probs=22.7
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCccc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESNS 285 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~s 285 (483)
|...++++|++-|+++|+.+|+|-+..
T Consensus 196 Gt~~df~~Lv~~aH~~Gi~VilD~V~N 222 (601)
T 3edf_A 196 GSNEDFVRLSTEARKRGMGLIQDVVLS 222 (601)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEECCc
Confidence 444558999999999999999998853
No 246
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=34.46 E-value=1.7e+02 Score=22.98 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=35.0
Q ss_pred eEEEecCCCHHHHHHHHHHhhhhhhhccC--ccEEEEE--ecccCCCCCccChHHHHHHHHHcCcEEE
Q 011567 216 TVVYFKHNDMDSLRNTLERVTADNKRAKK--LRRYIVV--EAVYQNSGQIAPLDELIRLKEKYRFRVF 279 (483)
Q Consensus 216 ~v~~~~~~d~~~Le~~l~~~~~~~~~~~~--~~~~iv~--e~v~~~~G~i~~L~~l~~l~~k~~~~li 279 (483)
.+......|++.+.+.|.+.-.+ .|. .-+-||+ +... .-.++.+|.++|++||+.++
T Consensus 18 ~vl~l~~~d~~~l~~~L~~ki~~---aP~FF~~aPVVlDl~~l~----~~~dl~~L~~~l~~~gl~~v 78 (120)
T 3ghf_A 18 SVVHLHEAEPEVIRQALEDKIAQ---APAFLKHAPVVINVSGLE----SPVNWPELHKIVTSTGLRII 78 (120)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHH---SHHHHTTCEEEEEEEECC----SSCCHHHHHHHHHTTTCEEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHHh---ChHhhCCCcEEEEccccC----ChHHHHHHHHHHHHcCCEEE
Confidence 34556677888887777553322 111 1222333 3332 23579999999999999985
No 247
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=33.06 E-value=28 Score=34.39 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=19.5
Q ss_pred hHHHHHHHHHcCcEEEEeCcc
Q 011567 264 LDELIRLKEKYRFRVFLDESN 284 (483)
Q Consensus 264 L~~l~~l~~k~~~~li~DEa~ 284 (483)
++++++-|++.|+.+|+|-+.
T Consensus 86 ~~~lv~~~h~~Gi~vi~D~V~ 106 (449)
T 3dhu_A 86 FKALTDRAHELGMKVMLDIVY 106 (449)
T ss_dssp HHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHCCCEEEEEEcc
Confidence 889999999999999999875
No 248
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=32.99 E-value=2.8e+02 Score=25.19 Aligned_cols=119 Identities=14% Similarity=0.093 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhhCCCCEEEe-cccHHHHHhhhhhhc--cCCcEEEEcC--CchhHHH--hHhhhcCCeEEEecCCCHHHH
Q 011567 156 HLDCEARIAKFLGTPDSILY-SYGLSTMFSAIPCFC--KKGDLIVADE--GVHWGIQ--NGLYLSRSTVVYFKHNDMDSL 228 (483)
Q Consensus 156 ~~~l~~~La~~~g~e~~i~~-~sG~~a~~~ai~~~~--~~gdiI~~~~--~~h~s~~--~g~~~s~~~v~~~~~~d~~~L 228 (483)
...+.+.-++++...+.+++ +++ .+....++... ++.-.|++++ +...+.. .-+...|.++.....+-.
T Consensus 96 ~~~Ia~~a~~~I~~g~~IlT~~~s-~Tv~~~l~~a~~~~~~~~V~v~etrP~~qG~~~a~~L~~~gI~vtli~dsa~--- 171 (276)
T 1vb5_A 96 KRELASIGAQLIDDGDVIITHSFS-STVLEIIRTAKERKKRFKVILTESSPDYEGLHLARELEFSGIEFEVITDAQM--- 171 (276)
T ss_dssp HHHHHHHHHHHCCTTEEEECCSCC-HHHHHHHHHHHHTTCCEEEEEECCTTTTHHHHHHHHHHHTTCCEEEECGGGH---
T ss_pred HHHHHHHHHHHccCCCEEEEeCCC-hHHHHHHHHHHHcCCeEEEEEeCCCcchhhHHHHHHHHHCCCCEEEEcHHHH---
Confidence 34455556666666666764 444 34444554443 3444566633 4433322 233346777776653322
Q ss_pred HHHHHHhhhhhhhccCccEEEEEecccCCCCCccC--hHHHHHHHHHcCcEEEEe-Cccccc
Q 011567 229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP--LDELIRLKEKYRFRVFLD-ESNSFG 287 (483)
Q Consensus 229 e~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~--L~~l~~l~~k~~~~li~D-Ea~s~g 287 (483)
-..+... ...++=.+.+..++|.... --.+..+|++|++.+++= +++.+.
T Consensus 172 ~~~m~~v---------d~vivGAd~i~~nG~v~nkiGt~~iA~~A~~~~vp~~V~a~~~K~~ 224 (276)
T 1vb5_A 172 GLFCREA---------SIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAETYKFH 224 (276)
T ss_dssp HHHHTTC---------SEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCGGGBC
T ss_pred HHHHccC---------CEEEEcccEEecCCCEeechhHHHHHHHHHHcCCCEEEeccccccC
Confidence 2234321 2455666778877555544 477888999999887763 344444
No 249
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}
Probab=28.45 E-value=57 Score=29.91 Aligned_cols=20 Identities=25% Similarity=0.349 Sum_probs=18.1
Q ss_pred hHHHHHHHHHcCcEEEEeCc
Q 011567 264 LDELIRLKEKYRFRVFLDES 283 (483)
Q Consensus 264 L~~l~~l~~k~~~~li~DEa 283 (483)
++.++++|+++|+++|+|--
T Consensus 92 ~d~~~~~a~~~Gi~vil~~~ 111 (351)
T 3vup_A 92 MKDLLDTAKKYNILVFPCLW 111 (351)
T ss_dssp HHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEec
Confidence 78999999999999999853
No 250
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=28.30 E-value=61 Score=26.72 Aligned_cols=53 Identities=21% Similarity=0.289 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHhhhhhhhccCccEEEEEecccCCCCCccC-h---HHHH-HHHHHcCcE-EEEeCccc
Q 011567 224 DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP-L---DELI-RLKEKYRFR-VFLDESNS 285 (483)
Q Consensus 224 d~~~Le~~l~~~~~~~~~~~~~~~~iv~e~v~~~~G~i~~-L---~~l~-~l~~k~~~~-li~DEa~s 285 (483)
+.+.|.+++++.. ...|+++-++++.|...+ . ++.+ .+++++++. .++||.++
T Consensus 43 ~~~~l~~li~~~~---------~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~T 101 (150)
T 1vhx_A 43 GLSRLSELIKDYT---------IDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLT 101 (150)
T ss_dssp CHHHHHHHHTTSE---------EEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSC
T ss_pred HHHHHHHHHHHcC---------CCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCC
Confidence 6777888887654 346666655666677665 2 3444 455556754 56699765
No 251
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=27.94 E-value=27 Score=34.76 Aligned_cols=27 Identities=11% Similarity=0.289 Sum_probs=23.1
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCccc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESNS 285 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~s 285 (483)
|...+|++|++-|++.|+.+|+|-+..
T Consensus 74 Gt~~df~~lv~~aH~~Gi~VilD~V~N 100 (496)
T 4gqr_A 74 GNEDEFRNMVTRCNNVGVRIYVDAVIN 100 (496)
T ss_dssp BCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 555569999999999999999999853
No 252
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=27.34 E-value=37 Score=33.46 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=21.3
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCcc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESN 284 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~ 284 (483)
|...+++++++-|++.|+.+|+|-+.
T Consensus 67 Gt~~df~~lv~~aH~~Gi~VilD~V~ 92 (441)
T 1lwj_A 67 GSEREFKEMIEAFHDSGIKVVLDLPI 92 (441)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 55555888999999999999999874
No 253
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=26.37 E-value=39 Score=34.22 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=23.0
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCccc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESNS 285 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~s 285 (483)
|...++++|++-|++.|+.||+|=+..
T Consensus 77 Gt~~dfk~Lv~~aH~~Gi~VilD~V~N 103 (549)
T 4aie_A 77 GTMADMDELISKAKEHHIKIVMDLVVN 103 (549)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 555669999999999999999998853
No 254
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=25.89 E-value=65 Score=28.66 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=29.2
Q ss_pred ccEEEEEecccCC----------CCCccChHHHHHHHHHcCcEEEE
Q 011567 245 LRRYIVVEAVYQN----------SGQIAPLDELIRLKEKYRFRVFL 280 (483)
Q Consensus 245 ~~~~iv~e~v~~~----------~G~i~~L~~l~~l~~k~~~~li~ 280 (483)
..+.|++|=+... .|.+..++++.+++++||+.++.
T Consensus 167 ~PagVicEi~~~~~~~~~~~~~~dG~mar~~~l~~fA~~h~L~iit 212 (233)
T 1k4i_A 167 RPVAVISEIVDDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCT 212 (233)
T ss_dssp CSBEEEEEBEECCEECTTSSCEESCEECCHHHHHHHHHHTTCEEEE
T ss_pred CceEEEEEeCCCcccccccccCCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 4678888865431 69999999999999999998875
No 255
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=25.48 E-value=45 Score=32.73 Aligned_cols=34 Identities=24% Similarity=0.458 Sum_probs=25.7
Q ss_pred EEEecccCCCCCccChHHHHHHHHHcCcEEEEeCccc
Q 011567 249 IVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNS 285 (483)
Q Consensus 249 iv~e~v~~~~G~i~~L~~l~~l~~k~~~~li~DEa~s 285 (483)
.-+++-+ |...++++|++-|++.|+.+|+|-+..
T Consensus 72 ~~idp~~---Gt~~d~~~lv~~ah~~Gi~vilD~V~N 105 (424)
T 2dh2_A 72 LQIDPNF---GSKEDFDSLLQSAKKKSIRVILDLTPN 105 (424)
T ss_dssp EEECGGG---CCHHHHHHHHHHHHHTTCEEEEECCTT
T ss_pred cccCccC---CCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3444444 666678999999999999999998753
No 256
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=25.34 E-value=44 Score=35.31 Aligned_cols=26 Identities=15% Similarity=0.465 Sum_probs=22.0
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCcc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESN 284 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~ 284 (483)
|...++++|++-|++.|+.+|+|-+.
T Consensus 309 Gt~~df~~Lv~~aH~~GikVilD~V~ 334 (696)
T 4aee_A 309 GTMEDFEKLVQVLHSRKIKIVLDITM 334 (696)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CCHHHHHHHHHHHHHCCCEEEEeccc
Confidence 44445899999999999999999884
No 257
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=24.60 E-value=1e+02 Score=24.69 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=29.1
Q ss_pred eEEEccCCCCHHHHHHHHHHHHHHHHHHHhcC
Q 011567 451 IRLFVSAAHSEADLVKACESLKRISAVVLRDR 482 (483)
Q Consensus 451 lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~~ 482 (483)
+++..+...++++.+.+++.+.+++.+++.+.
T Consensus 24 i~i~tnv~~s~~~~~~l~~~ls~~la~~lgKP 55 (133)
T 3fwt_A 24 LQTIVSVSLDDQKRANLSAAYGMICREELGKP 55 (133)
T ss_dssp EEEEESSCCCHHHHHHHHHHHHHHHHHHHSCT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHhCcC
Confidence 88999999999999999999999999998774
No 258
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=24.32 E-value=48 Score=33.13 Aligned_cols=26 Identities=15% Similarity=0.356 Sum_probs=21.5
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCcc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESN 284 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~ 284 (483)
|...++++|++-|++.|+.+|+|-+.
T Consensus 79 Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 104 (488)
T 1wza_A 79 GTLEDFHKLVEAAHQRGIKVIIDLPI 104 (488)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 45555899999999999999999874
No 259
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=24.12 E-value=32 Score=34.00 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=22.1
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCcc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESN 284 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~ 284 (483)
|...++++|++-|+++|+.+|+|-+.
T Consensus 62 Gt~~dfk~Lv~~aH~~Gi~VilD~V~ 87 (448)
T 1g94_A 62 GNRAQFIDMVNRCSAAGVDIYVDTLI 87 (448)
T ss_dssp BCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEee
Confidence 44445899999999999999999885
No 260
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=23.83 E-value=1.2e+02 Score=19.77 Aligned_cols=31 Identities=6% Similarity=0.070 Sum_probs=26.0
Q ss_pred eEEEccCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011567 451 IRLFVSAAHSEADLVKACESLKRISAVVLRD 481 (483)
Q Consensus 451 lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~ 481 (483)
+++.+....|+++-.++.+.+-+++.+.+..
T Consensus 6 i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~ 36 (63)
T 2x4k_A 6 VNVKLLEGRSDEQLKNLVSEVTDAVEKTTGA 36 (63)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 6777666779999999999999999887754
No 261
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=23.29 E-value=93 Score=23.54 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=18.6
Q ss_pred hHHHHHHHHHcCcEEEEeCcc
Q 011567 264 LDELIRLKEKYRFRVFLDESN 284 (483)
Q Consensus 264 L~~l~~l~~k~~~~li~DEa~ 284 (483)
-.+|+++++++|+.++.|..-
T Consensus 44 A~~I~~~A~e~gVPi~e~~~L 64 (97)
T 3t7y_A 44 AKRIIAEAEKYGVPIMRNVPL 64 (97)
T ss_dssp HHHHHHHHHHHTCCEEECHHH
T ss_pred HHHHHHHHHHcCCeEEECHHH
Confidence 388999999999999999753
No 262
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=22.92 E-value=48 Score=32.93 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=20.5
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCcc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESN 284 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~ 284 (483)
|...+++++++-|+++|+.+|+|=+.
T Consensus 94 Gt~~df~~lv~~~h~~Gi~VilD~V~ 119 (475)
T 2z1k_A 94 GGNEALRHLLEVAHAHGVRVILDGVF 119 (475)
T ss_dssp TCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 55666888888888888888888764
No 263
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=22.66 E-value=41 Score=33.61 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=21.9
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCcc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESN 284 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~ 284 (483)
|...++++|++-|++.|+.+|+|-+.
T Consensus 80 Gt~~df~~Lv~~aH~~Gi~VilD~V~ 105 (485)
T 1wpc_A 80 GTRSQLQAAVTSLKNNGIQVYGDVVM 105 (485)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 44444899999999999999999874
No 264
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=22.51 E-value=52 Score=32.75 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=23.2
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCccc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESNS 285 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~s 285 (483)
|...+++++++-|+++|+.+|+|-+..
T Consensus 95 Gt~~df~~lv~~~H~~Gi~VilD~V~N 121 (478)
T 2guy_A 95 GTADDLKALSSALHERGMYLMVDVVAN 121 (478)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 666679999999999999999998753
No 265
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=22.17 E-value=54 Score=25.95 Aligned_cols=22 Identities=14% Similarity=0.058 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCcEEEEeCccccccc
Q 011567 265 DELIRLKEKYRFRVFLDESNSFGVL 289 (483)
Q Consensus 265 ~~l~~l~~k~~~~li~DEa~s~g~l 289 (483)
+++.++|+++|++++ . .+.|++
T Consensus 95 ~e~~~~a~~~Girvv-~--nC~gv~ 116 (122)
T 3ff4_A 95 EELEEILSENGIEPV-I--GCTLVM 116 (122)
T ss_dssp HHHHHHHHHTTCEEE-E--SCHHHH
T ss_pred HHHHHHHHHcCCeEE-C--CcCeEE
Confidence 799999999999988 4 455544
No 266
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=22.13 E-value=43 Score=33.42 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=21.9
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCcc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESN 284 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~ 284 (483)
|...++++|++-|+++|+.+|+|-+.
T Consensus 76 Gt~~df~~lv~~aH~~Gi~VilD~V~ 101 (483)
T 3bh4_A 76 GTKSELQDAIGSLHSRNVQVYGDVVL 101 (483)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 44444899999999999999999874
No 267
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=22.11 E-value=1.2e+02 Score=24.38 Aligned_cols=33 Identities=9% Similarity=0.036 Sum_probs=29.5
Q ss_pred ceEEEccCCCCHHHHHHHHHHHHHHHHHHHhcC
Q 011567 450 GIRLFVSAAHSEADLVKACESLKRISAVVLRDR 482 (483)
Q Consensus 450 ~lRi~~~~~~t~edi~~~~~~l~~~~~~~~~~~ 482 (483)
-+++..+...++++.+.+++.+.+++.+++.++
T Consensus 24 ~i~i~tnv~~~~~~~~~l~~~ls~~la~~lgKP 56 (135)
T 3t5s_A 24 CAIVTTNADFTKDQADAFCLDMGQVLAKETGKP 56 (135)
T ss_dssp EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCSC
T ss_pred eEEEEecCccchhccchhHHHHHHHHHHhhCCc
Confidence 389999999999999999999999999998764
No 268
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=21.91 E-value=44 Score=33.34 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=21.9
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCcc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESN 284 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~ 284 (483)
|...++++|++-|+++|+.+|+|-+.
T Consensus 78 Gt~~df~~lv~~aH~~Gi~VilD~V~ 103 (480)
T 1ud2_A 78 GTKAQLERAIGSLKSNDINVYGDVVM 103 (480)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 44444899999999999999999874
No 269
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=21.57 E-value=46 Score=32.80 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.3
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCcc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESN 284 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~ 284 (483)
|...+++++++-|+++|+.+|+|-+.
T Consensus 84 Gt~~df~~lv~~~H~~Gi~VilD~V~ 109 (435)
T 1mxg_A 84 GSKEELVRLIQTAHAYGIKVIADVVI 109 (435)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 55556899999999999999999874
No 270
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Probab=21.36 E-value=54 Score=34.51 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.4
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCcc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESN 284 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~ 284 (483)
|...++++|++-|+++|+.+|+|-+.
T Consensus 113 Gt~~dfk~Lv~~aH~~GI~VilD~V~ 138 (686)
T 1d3c_A 113 GTIADFQNLIAAAHAKNIKVIIDFAP 138 (686)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 55666899999999999999999874
No 271
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Probab=21.34 E-value=53 Score=33.63 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=20.6
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCcc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESN 284 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~ 284 (483)
|...++++|++-|++.|+.||+|-+.
T Consensus 90 Gt~~df~~lv~~aH~~Gi~VilD~V~ 115 (570)
T 1m53_A 90 GTMEDFDSLVAEMKKRNMRLMIDVVI 115 (570)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 44555888888888999999999774
No 272
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=21.19 E-value=55 Score=34.43 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=22.0
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCcc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESN 284 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~ 284 (483)
|...++++|++-|++.|+.+|+|-+.
T Consensus 109 Gt~~df~~Lv~~aH~~GIkVilD~V~ 134 (680)
T 1cyg_A 109 GTLSDFQRLVDAAHAKGIKVIIDFAP 134 (680)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 55556899999999999999999874
No 273
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=21.19 E-value=56 Score=33.37 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=21.5
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCcc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESN 284 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~ 284 (483)
|...++++|++-|++.|+.+|+|=+.
T Consensus 77 Gt~~df~~Lv~~aH~~Gi~VilD~V~ 102 (557)
T 1zja_A 77 GTMEDFDRLMAELKKRGMRLMVDVVI 102 (557)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 45555899999999999999999875
No 274
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=21.05 E-value=46 Score=33.24 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=20.3
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCcc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESN 284 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~ 284 (483)
|...++++|++-|++.|+.+|+|-+.
T Consensus 100 Gt~~df~~Lv~~aH~~Gi~VilD~V~ 125 (488)
T 2wc7_A 100 GGNEAFKELLDAAHQRNIKVVLDGVF 125 (488)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45556888888888888888888764
No 275
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=20.95 E-value=47 Score=32.33 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=22.6
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCccc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESNS 285 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~s 285 (483)
|...+++++++-|+++|+.+|+|-+..
T Consensus 66 Gt~~d~~~lv~~~h~~Gi~VilD~V~N 92 (405)
T 1ht6_A 66 GNAAELKSLIGALHGKGVQAIADIVIN 92 (405)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 444558999999999999999998853
No 276
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=20.87 E-value=56 Score=34.38 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=22.3
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCcc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESN 284 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~ 284 (483)
|...++++|++-|+++|+.+|+|-+.
T Consensus 105 Gt~~df~~Lv~~aH~~GikVilD~V~ 130 (686)
T 1qho_A 105 GNWTTFDTLVNDAHQNGIKVIVDFVP 130 (686)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 55666899999999999999999874
No 277
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=20.79 E-value=55 Score=32.64 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=22.9
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCccc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESNS 285 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~s 285 (483)
|...+++++++-|+++|+.+|+|-+..
T Consensus 95 Gt~~df~~lv~~~H~~Gi~VilD~V~N 121 (484)
T 2aaa_A 95 GTADNLKSLSDALHARGMYLMVDVVPD 121 (484)
T ss_dssp CCHHHHHHHHHHHHTTTCEEEEEECCS
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 556669999999999999999998753
No 278
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=20.77 E-value=48 Score=33.49 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=22.2
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCcc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESN 284 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~ 284 (483)
|...++++|++-|+++|+.+|+|-+.
T Consensus 79 Gt~~dfk~Lv~~aH~~Gi~VilD~V~ 104 (515)
T 1hvx_A 79 GTKAQYLQAIQAAHAAGMQVYADVVF 104 (515)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 44445899999999999999999874
No 279
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=20.46 E-value=1.7e+02 Score=19.59 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=25.5
Q ss_pred eEEEccCCCCHHHHHHHHHHHHHHHHHHHh
Q 011567 451 IRLFVSAAHSEADLVKACESLKRISAVVLR 480 (483)
Q Consensus 451 lRi~~~~~~t~edi~~~~~~l~~~~~~~~~ 480 (483)
++|.+....|+++-.++.+.+-+++.+.+.
T Consensus 3 i~I~~~~Grs~eqk~~L~~~it~~~~~~lg 32 (65)
T 3ry0_A 3 IRVTLLEGRSPQEVAALGEALTAAAHETLG 32 (65)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 567666678999999999999999988764
No 280
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=20.38 E-value=1e+02 Score=25.18 Aligned_cols=38 Identities=13% Similarity=0.230 Sum_probs=28.1
Q ss_pred EEEEEecc-------cCCCCCccC----------hHHHHHHHHHcCcEEEEeCcc
Q 011567 247 RYIVVEAV-------YQNSGQIAP----------LDELIRLKEKYRFRVFLDESN 284 (483)
Q Consensus 247 ~~iv~e~v-------~~~~G~i~~----------L~~l~~l~~k~~~~li~DEa~ 284 (483)
-+||++|. |..+..-.| -..|+++++++|+.++.|...
T Consensus 48 ~vvi~NPth~AVAL~Yd~~~~~AP~VvAKG~g~~A~~I~e~A~e~gVPi~e~~~L 102 (144)
T 2jlj_A 48 SVVVAAATHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPL 102 (144)
T ss_dssp SEEEEETTTEEEEEECCTTTCSSCEEEEEEETHHHHHHHHHHHHHTCCEEECHHH
T ss_pred CEEEECCCcEEEEEEeCCCCCCCCEEEEEeCCHHHHHHHHHHHHcCCCEEeCHHH
Confidence 46777773 344445566 388999999999999999753
No 281
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1
Probab=20.09 E-value=48 Score=33.88 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=21.4
Q ss_pred CCccChHHHHHHHHHcCcEEEEeCcc
Q 011567 259 GQIAPLDELIRLKEKYRFRVFLDESN 284 (483)
Q Consensus 259 G~i~~L~~l~~l~~k~~~~li~DEa~ 284 (483)
|...++++|++-|++.|+.+|+|-+.
T Consensus 76 Gt~~df~~lv~~~h~~Gi~VilD~V~ 101 (558)
T 1uok_A 76 GTMEDWDELLHEMHERNMKLMMDLVV 101 (558)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 45555889999999999999999874
Done!