RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 011567
(483 letters)
>gnl|CDD|178417 PLN02822, PLN02822, serine palmitoyltransferase.
Length = 481
Score = 921 bits (2383), Expect = 0.0
Identities = 394/481 (81%), Positives = 433/481 (90%)
Query: 1 MASFILNFVNTMLNRVKLALDSPSAGAVVFGVHISGHLFVEVLLLVVILFLLSQKSYKPP 60
MA +LN VN L RV + L++P A AVVFGVHI GHL VE LL+VVI+FLLSQKSYKPP
Sbjct: 1 MALNVLNLVNAALERVTMLLEAPLARAVVFGVHIGGHLVVEGLLIVVIVFLLSQKSYKPP 60
Query: 61 KRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYL 120
KRPLT+KEIDELCDEW PE LIPPI EEMR EPPVLESAAGPHTII+GK+VVNFASANYL
Sbjct: 61 KRPLTEKEIDELCDEWTPEPLIPPITEEMRPEPPVLESAAGPHTIINGKDVVNFASANYL 120
Query: 121 GLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLS 180
GLIG+EK+ ESCTSALEKYGVGSCGPRGFYGTIDVHLDCE +IAKFLGTPDSILYSYGLS
Sbjct: 121 GLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPDSILYSYGLS 180
Query: 181 TMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNK 240
T+FS IP FCKKGD+IVADEGVHWGIQNGLYLSRST+VYFKHNDM+SLRNTLE++TA+NK
Sbjct: 181 TIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAENK 240
Query: 241 RAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC 300
R KKLRRYIVVEA+YQNSGQIAPLDE++RLKEKYRFRV LDESNSFGVLG+SGRGL+EH
Sbjct: 241 RKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHF 300
Query: 301 GVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI 360
GVP++KIDI+TAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI
Sbjct: 301 GVPIEKIDIITAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI 360
Query: 361 DVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLE 420
DVLE+NP ++ KLK+N A+L GLSDI GLSI SN SPIVFL LEKSTGS K DL LLE
Sbjct: 361 DVLEDNPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLE 420
Query: 421 DIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVVLR 480
IAD LKED V VV SKRS LDKCRLPVGIRLFVSA H+E+D++KA ESLKR++A VL+
Sbjct: 421 HIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAASVLK 480
Query: 481 D 481
Sbjct: 481 K 481
>gnl|CDD|178766 PLN03227, PLN03227, serine palmitoyltransferase-like protein;
Provisional.
Length = 392
Score = 339 bits (872), Expect = e-113
Identities = 161/385 (41%), Positives = 228/385 (59%), Gaps = 18/385 (4%)
Query: 112 VNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPD 171
+NFA+ ++L L ++ +L YG GSCGPRGFYGTID HL+ E +A+FLGT
Sbjct: 1 LNFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTES 60
Query: 172 SILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNT 231
+ILYS G ST S + F K+GDL+V D GV+ + G+ LSR+ V +F+HNDM LR
Sbjct: 61 AILYSDGASTTSSTVAAFAKRGDLLVVDRGVNEALLVGVSLSRANVRWFRHNDMKDLRRV 120
Query: 232 LERVTADNKRAKKL----RRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFG 287
LE+V A + K+ RR++VVE +Y+N+G +APL EL+ LKE++ +R+ LDES SFG
Sbjct: 121 LEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFG 180
Query: 288 VLGRSGRGLTEHCGV-PVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSA 346
LG+SGRG EH G+ P+ +IVT ++ +A + GG GS VVDHQRLS SGY FSA
Sbjct: 181 TLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVGGMTVGSEEVVDHQRLSGSGYCFSA 240
Query: 347 SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGL--SDI-------HGLSIASNPE 397
S PP+LA A TA P L+ +L + A L + L S + L I S+P
Sbjct: 241 SAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPI 300
Query: 398 SPIVFLILEKSTGSMKND-LQLLEDIADWALKEDGVFVVTSKRSM--LDKCRLPVGIRLF 454
SPI++L L + + D +L+ IA +L E GV VV++ + + P +R+
Sbjct: 301 SPIIYLRLSDQEATRRTDETLILDQIAHHSLSE-GVAVVSTGGHVKKFLQLVPPPCLRVV 359
Query: 455 VSAAHSEADLVKACESLKRISAVVL 479
+A+H+ D+ K L +L
Sbjct: 360 ANASHTREDIDKLLTVLGEAVEAIL 384
>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism].
Length = 388
Score = 318 bits (816), Expect = e-105
Identities = 138/388 (35%), Positives = 218/388 (56%), Gaps = 31/388 (7%)
Query: 94 PVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
L+ G G++V+NF S +YLGL H +L+E+ +A+ +YGVG+ G R GT
Sbjct: 24 RALDRRQGLAIRADGRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTS 83
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
D+H++ E +A FLG ++L+S G + KKGDLI +DE H I +G+ LS
Sbjct: 84 DLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIRLS 143
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
R+ V FKHND+D L LE + R+ IV E V+ G IAPL EL+ L EK
Sbjct: 144 RAEVRRFKHNDLDHLEALLEE----ARENGARRKLIVTEGVFSMDGDIAPLPELVELAEK 199
Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
Y +++DE+++ GVLG +GRGL EH G+ +++DI+ +G AL + GG+ GSA ++D
Sbjct: 200 YGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALID 259
Query: 334 HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA 393
+ R + ++FS +LPP +A+AA+ A+ +LEE P+ +L++ A R+ L GL +
Sbjct: 260 YLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLK-ALGLVLL 318
Query: 394 SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV-------VTSKRSMLDKCR 446
+ ESPI+ +IL +++ LL E+G++V V + L
Sbjct: 319 PS-ESPIIPVILGDEERALEASRALL---------EEGIYVSAIRPPTVPKGTARL---- 364
Query: 447 LPVGIRLFVSAAHSEADLVKACESLKRI 474
R+ ++AAH+E D+ + E+L +
Sbjct: 365 -----RITLTAAHTEEDIDRLAEALSEV 387
>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS),
8-amino-7-oxononanoate synthase (AONS), and
2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
responsible for the condensation of L-serine with
palmitoyl-CoA to produce 3-ketodihydrospingosine, the
reaction of the first step in sphingolipid biosynthesis.
ALAS is involved in heme biosynthesis; it catalyzes the
synthesis of 5-aminolevulinic acid from glycine and
succinyl-coenzyme A. AONS catalyses the decarboxylative
condensation of l-alanine and pimeloyl-CoA in the first
committed step of biotin biosynthesis. KBL catalyzes the
second reaction step of the metabolic degradation
pathway for threonine converting 2-amino-3-ketobutyrate,
to glycine and acetyl-CoA. The members of this CD are
widely found in all three forms of life.
Length = 349
Score = 287 bits (737), Expect = 1e-93
Identities = 132/372 (35%), Positives = 204/372 (54%), Gaps = 30/372 (8%)
Query: 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG 168
K+V+NF S +YLGL H +++E+ AL+KYGVG+ G R GT D+H + E +A+F G
Sbjct: 1 KKVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHG 60
Query: 169 TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSL 228
++++S G + + KGDLI++D H I +G+ LS + FKHNDM+ L
Sbjct: 61 KEAALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKHNDMEDL 120
Query: 229 RNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGV 288
L KKL IV E VY G IAPL EL+ L +KY +F+DE++S GV
Sbjct: 121 EKLLREARRPYG--KKL---IVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGV 175
Query: 289 LGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVFSASL 348
G GRG+ E G+ D +DI+ +G A GG+ GS ++D+ R + G++FS SL
Sbjct: 176 YGPHGRGVEEFGGLT-DDVDIIMGTLGKAFGAVGGYIAGSKELIDYLRSYARGFIFSTSL 234
Query: 349 PPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS 408
PP +A+AA+ A++VL+ P+ +L++N LR GL ++ G + +P I LI +
Sbjct: 235 PPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL-GFPVGGSPSHIIPPLIGDDP 293
Query: 409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVG------IRLFVSAAHSEA 462
++ +D AL E G++V R P +R+ +SAAH++
Sbjct: 294 AKAVA--------FSD-ALLERGIYVQA--------IRYPTVPRGTARLRISLSAAHTKE 336
Query: 463 DLVKACESLKRI 474
D+ + E+LK +
Sbjct: 337 DIDRLLEALKEV 348
>gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase;
Provisional.
Length = 397
Score = 252 bits (646), Expect = 2e-79
Identities = 130/388 (33%), Positives = 205/388 (52%), Gaps = 32/388 (8%)
Query: 95 VLESAAGPH-TIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
V+ S G T+ GKEV+NF + NYLGL H +L+ + +AL+ +G G R GT
Sbjct: 27 VITSPQGADITVADGKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQ 86
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
D+H + E ++AKFLGT D+ILYS K D I++D H I +G+ L
Sbjct: 87 DLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETLLGKEDAIISDALNHASIIDGVRLC 146
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
++ + +NDM L L+ R + I + V+ G IAPL E+ L +K
Sbjct: 147 KAKRYRYANNDMADLEAQLKEAKEAGAR----HKLIATDGVFSMDGDIAPLPEICDLADK 202
Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSARVV 332
Y V +D+S++ G +G +GRG EH GV +D++DI+T +G AL GG+ G V+
Sbjct: 203 YDALVMVDDSHAVGFVGENGRGTVEHFGV-MDRVDIITGTLGKALGGASGGYTAGRKEVI 261
Query: 333 DHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSI 392
D R S Y+FS SL P + +A+I +++LEE+ +L +L +N R G++ G ++
Sbjct: 262 DWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAA-GFTL 320
Query: 393 ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV------VTSKRSMLDKCR 446
E PI+ ++L D +L ++ AD L E+GV+V V K + R
Sbjct: 321 G-PGEHPIIPVML--------GDAKLAQEFAD-RLLEEGVYVIGFSFPVVPK----GQAR 366
Query: 447 LPVGIRLFVSAAHSEADLVKACESLKRI 474
IR +SAAH++ L +A ++ +++
Sbjct: 367 ----IRTQMSAAHTKEQLDRAIDAFEKV 390
>gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase.
7-keto-8-aminopelargonic acid synthetase is an alternate
name. This model represents 8-amino-7-oxononanoate
synthase, the BioF protein of biotin biosynthesis. This
model is based on a careful phylogenetic analysis to
separate members of this family from
2-amino-3-ketobutyrate and other related pyridoxal
phosphate-dependent enzymes. In several species,
including Staphylococcus and Coxiella, a candidate
8-amino-7-oxononanoate synthase is confirmed by location
in the midst of a biotin biosynthesis operon but scores
below the trusted cutoff of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 360
Score = 248 bits (636), Expect = 2e-78
Identities = 122/387 (31%), Positives = 200/387 (51%), Gaps = 35/387 (9%)
Query: 94 PVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
L+ GP + G+ ++NF+S +YLGL H +++++ E+YG GS R G
Sbjct: 1 RPLDRGPGPEVVRDGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNS 60
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
+H + E +A++ GT ++L+S G I KGDLI++D H + +G LS
Sbjct: 61 PLHEELEEELAEWKGTEAALLFSSGYLANVGVISALVGKGDLILSDALNHASLIDGCRLS 120
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
+ V ++HND++ L LE K + R+ IV + V+ G IAPL +L+ L E+
Sbjct: 121 GARVRRYRHNDVEHLERLLE------KNRGERRKLIVTDGVFSMDGDIAPLPQLVALAER 174
Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
Y + +D+++ GVLG GRG EH G+ + +DI + AL + G + GS ++D
Sbjct: 175 YGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYGAYVAGSQALID 234
Query: 334 HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA 393
+ + +FS +LPP +A+AA+ A+++++E P KL A LR GL G ++
Sbjct: 235 YLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEA-LGFTL- 292
Query: 394 SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV-----TSKRSMLDKCRLP 448
+PIV +I+ G + L L E L++ G+FV T +P
Sbjct: 293 MPSCTPIVPVII----GDNASALALAE-----ELQQQGIFVGAIRPPT----------VP 333
Query: 449 VG---IRLFVSAAHSEADLVKACESLK 472
G +RL +SAAH+ D+ + E+LK
Sbjct: 334 AGTSRLRLTLSAAHTPGDIDRLAEALK 360
>gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.
Length = 385
Score = 233 bits (598), Expect = 2e-72
Identities = 121/391 (30%), Positives = 192/391 (49%), Gaps = 40/391 (10%)
Query: 94 PVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
E AG ++ G+ ++NFAS +YLGL H +L+ + A +YG GS G R G
Sbjct: 24 RPREGGAGRWLVVDGRRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNS 83
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
H E +A++ G ++L+S G + + + KGDLIV+D+ H + +G LS
Sbjct: 84 PAHEALEEELAEWFGAERALLFSSGYAANLAVLTALAGKGDLIVSDKLNHASLIDGARLS 143
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
R+ V + HND+D+L L + A R IV E+V+ G +APL EL+ L +
Sbjct: 144 RARVRRYPHNDVDALEALLAKWRAG-------RALIVTESVFSMDGDLAPLAELVALARR 196
Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
+ + +DE++ GVLG GRGL G+ + I+ +G AL + G GS ++D
Sbjct: 197 HGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSGAAVLGSETLID 256
Query: 334 HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIA 393
+ + ++F+ +LPP A+AA A+ +L P+ +L A LR GL G +
Sbjct: 257 YLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRA-LGFQL- 314
Query: 394 SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV-------VTSKRSMLDKCR 446
+ +S I LI+ G + L L AL+E G +V V
Sbjct: 315 MDSQSAIQPLIV----GDNERALALAA-----ALQEQGFWVGAIRPPTV----------- 354
Query: 447 LPVG---IRLFVSAAHSEADLVKACESLKRI 474
P G +R+ ++AAH+EAD+ + E+L
Sbjct: 355 -PAGTSRLRITLTAAHTEADIDRLLEALAEA 384
>gnl|CDD|130884 TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-dependent
acyltransferase, putative. This model represents an
enzyme subfamily related to three known enzymes; it
appears closest to glycine C-acteyltransferase, shows no
overlap with it in species distribution, and may share
that function. The three closely related enzymes are
glycine C-acetyltransferase (2-amino-3-ketobutyrate
coenzyme A ligase), 5-aminolevulinic acid synthase, and
8-amino-7-oxononanoate synthase. All transfer the
R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from
coenzyme A to an amino acid (Gly, Gly, Ala,
respectively), with release of CO2 for the latter two
reactions.
Length = 385
Score = 228 bits (583), Expect = 3e-70
Identities = 116/388 (29%), Positives = 206/388 (53%), Gaps = 30/388 (7%)
Query: 92 EPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYG 151
VLESA GP ++GKEV+N +S NYLG H +L E+ A+++YGVG+ R G
Sbjct: 16 SIRVLESAQGPRVRVNGKEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAG 75
Query: 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY 211
T+ +H + E ++AKF T ++++ G +T + +KGD++++DE H I +GL
Sbjct: 76 TLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDGLR 135
Query: 212 LSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLK 271
L+++T +KH DMD L L + K + IV + V+ G +APL E++ L
Sbjct: 136 LTKATKKIYKHADMDDLDRVLRENPSYGK------KLIVTDGVFSMDGDVAPLPEIVELA 189
Query: 272 EKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARV 331
E+Y ++D+++ GV+G +GRG H G+ DK+DI + A+ GG+ G +
Sbjct: 190 ERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLSKAIGVVGGYAAGHKEL 248
Query: 332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLS 391
+++ + + ++FS + PP + +A A+D L+ +P+L+ +L NT + GL + G
Sbjct: 249 IEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKL-GYD 307
Query: 392 IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV-----TSKRSMLDKCR 446
E+PI +++ D + ++ + L ++G+F T R R
Sbjct: 308 T-GGSETPITPVVI--------GDEKAAQEFSR-RLFDEGIFAQSIVFPTVPR---GTAR 354
Query: 447 LPVGIRLFVSAAHSEADLVKACESLKRI 474
IR +A H++ DL +A ++ +++
Sbjct: 355 ----IRNIPTAEHTKDDLDQALDAYEKV 378
>gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase.
This model represents a narrowly defined clade of animal
and bacterial (almost exclusively Proteobacterial)
2-amino-3-ketobutyrate--CoA ligase. This enzyme can act
in threonine catabolism. The closest homolog from
Bacillus subtilis, and sequences like it, may be
functionally equivalent but were not included in the
model because of difficulty in finding reports of
function [Energy metabolism, Amino acids and amines].
Length = 393
Score = 211 bits (540), Expect = 5e-64
Identities = 134/396 (33%), Positives = 198/396 (50%), Gaps = 48/396 (12%)
Query: 95 VLESAAGPH-TIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
++ S G + G+EV+NF + NYLGL H L+++ AL+++G G R GT
Sbjct: 23 IITSPQGADIRVADGREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQ 82
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKG----------DLIVADEGVH 203
D+H + EA+IA FLGT D+ILY+ CF G D I++D H
Sbjct: 83 DIHKELEAKIAAFLGTEDTILYA----------SCFDANGGLFETLLGAEDAIISDALNH 132
Query: 204 WGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP 263
I +G+ L ++ + +NDM L L+ A R R I + V+ G IAP
Sbjct: 133 ASIIDGVRLCKAKRYRYANNDMADLEAQLKEARAAGAR----HRLIATDGVFSMDGVIAP 188
Query: 264 LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL-ATEG 322
LDE+ L +KY V +DE ++ G LG +GRG E CGV + ++DI+T +G AL G
Sbjct: 189 LDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGV-MGRVDIITGTLGKALGGASG 247
Query: 323 GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRT 382
GF T VV+ R S Y+FS SLPP + A+I +++LE + +L +L NT R
Sbjct: 248 GFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRE 307
Query: 383 GLS----DIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSK 438
+ DI A +P P+ M D L + A L+E G++V
Sbjct: 308 RMEAAGFDIKP---ADHPIIPV-----------MLYDAVLAQRFARRLLEE-GIYVTGFF 352
Query: 439 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 474
++ K + IR+ +SAAH+E L +A E+ RI
Sbjct: 353 YPVVPKGQ--ARIRVQISAAHTEEQLDRAVEAFTRI 386
>gnl|CDD|178101 PLN02483, PLN02483, serine palmitoyltransferase.
Length = 489
Score = 176 bits (449), Expect = 8e-50
Identities = 104/381 (27%), Positives = 190/381 (49%), Gaps = 32/381 (8%)
Query: 113 NFASANYLGLIGHEKLLESCT----SALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG 168
N S NYLG + E CT +L+KY +C R GT +H + E +A+F+G
Sbjct: 104 NLGSYNYLGFAAAD---EYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVG 160
Query: 169 TPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSL 228
P +I++ G +T + IP KG LI++D H I NG S +T+ F+HN L
Sbjct: 161 KPAAIVFGMGYATNSTIIPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHL 220
Query: 229 RNTLERVTADNKRAKKLRRY----IVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESN 284
L A+ + + R + ++VE +Y G++ L E++ + +KY+ V+LDE++
Sbjct: 221 EEVLREQIAEG-QPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAH 279
Query: 285 SFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSGYVF 344
S G +G++GRG+ E GV +DI+ + + GG+ GS ++ + + + +++
Sbjct: 280 SIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKRTCPAHLY 339
Query: 345 SASLPPYLASAAITAIDVL--EENPDL----ITKLKKNTAILRTGLSDIHGLSIASNPES 398
+ S+ P I+AI V+ E+ + + ++++N+ R+ L + G + + +S
Sbjct: 340 ATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GFEVLGDNDS 398
Query: 399 PIVFLILEKSTGSMKNDLQLLEDIADWALKED-GVFVVTSKRSMLDKCRLPVGIRLFVSA 457
P++ ++L + + LK++ V VV + L R R+ +SA
Sbjct: 399 PVMPIMLYNPAK--------IPAFSRECLKQNVAVVVVGFPATPLLLAR----ARICISA 446
Query: 458 AHSEADLVKACESLKRISAVV 478
+HS DL+KA E + + +V
Sbjct: 447 SHSREDLIKALEVISEVGDLV 467
>gnl|CDD|233587 TIGR01821, 5aminolev_synth, 5-aminolevulinic acid synthase. This
model represents 5-aminolevulinic acid synthase, an
enzyme for one of two routes to the heme precursor
5-aminolevulinate. The protein is a pyridoxal
phosphate-dependent enzyme related to
2-amino-3-ketobutyrate CoA tranferase and
8-amino-7-oxononanoate synthase. This enzyme appears
restricted to the alpha Proteobacteria and mitochondrial
derivatives [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 402
Score = 173 bits (441), Expect = 2e-49
Identities = 98/334 (29%), Positives = 171/334 (51%), Gaps = 19/334 (5%)
Query: 103 HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEAR 162
H K+V + S +YLG+ H ++L++ L+KYG G+ G R GT H++ EA
Sbjct: 39 HRPDGAKDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAE 98
Query: 163 IAKFLGTPDSILYSYGLSTMFSAIPCFCKK--GDLIVADEGVHWGIQNGLYLSRSTVVYF 220
+A G +++++ G + + K G +I +DE H + G+ S + F
Sbjct: 99 LADLHGKESALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIF 158
Query: 221 KHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFL 280
+HND+ L L+ + + K+ I E+VY G IAP++E+ L +KY +L
Sbjct: 159 RHNDVAHLEKLLQ---SVDPNRPKI---IAFESVYSMDGDIAPIEEICDLADKYGALTYL 212
Query: 281 DESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSS 340
DE ++ G+ G G G+ E G+ + +IDI+ + A GG+ S +++D R +
Sbjct: 213 DEVHAVGLYGPRGGGIAERDGL-MHRIDIIEGTLAKAFGVVGGYIAASRKLIDAIRSYAP 271
Query: 341 GYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPI 400
G++F+ SLPP +A+ A +I L+E+ DL ++N L+ L + G+ + NP S I
Sbjct: 272 GFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEAL-GIPVIPNP-SHI 329
Query: 401 VFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV 434
V +I+ D L + ++D L + G++V
Sbjct: 330 VPVII--------GDAALCKKVSDLLLNKHGIYV 355
>gnl|CDD|236370 PRK09064, PRK09064, 5-aminolevulinate synthase; Validated.
Length = 407
Score = 165 bits (420), Expect = 3e-46
Identities = 103/335 (30%), Positives = 172/335 (51%), Gaps = 29/335 (8%)
Query: 107 SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKF 166
+EV + S +YLG+ H K++E+ AL++ G G+ G R GT H++ E +A
Sbjct: 44 GEREVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADL 103
Query: 167 LGTPDSILYSYG-------LSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVY 219
G +++++ G LST+ IP +I +DE H + G+ SR
Sbjct: 104 HGKEAALVFTSGYVSNDATLSTLAKLIP-----DCVIFSDELNHASMIEGIRRSRCEKHI 158
Query: 220 FKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVF 279
F+HND+ L E + A + KL I E+VY G IAP+ E+ L +KY +
Sbjct: 159 FRHNDVAHLE---ELLAAADPDRPKL---IAFESVYSMDGDIAPIAEICDLADKYNALTY 212
Query: 280 LDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSS 339
LDE ++ G+ G G G+ E G+ +D+IDI+ + A GG+ GSA +VD R +
Sbjct: 213 LDEVHAVGMYGPRGGGIAERDGL-MDRIDIIEGTLAKAFGVMGGYIAGSAALVDAVRSYA 271
Query: 340 SGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESP 399
G++F+ SLPP +A+AA+ +I L+E+ + + ++ A L+ L G+ + N S
Sbjct: 272 PGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAA-GIPVMPNE-SH 329
Query: 400 IVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV 434
IV +++ D + + +D L+E G++V
Sbjct: 330 IVPVMV--------GDPEKCKKASDMLLEEHGIYV 356
>gnl|CDD|184024 PRK13393, PRK13393, 5-aminolevulinate synthase; Provisional.
Length = 406
Score = 147 bits (373), Expect = 1e-39
Identities = 109/352 (30%), Positives = 170/352 (48%), Gaps = 35/352 (9%)
Query: 96 LESAAG--PHTIISG----KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGF 149
LE AG P G +EV + S +YLG+ H +L + AL+ G G+ G R
Sbjct: 26 LERQAGAFPRATHHGPDGPREVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNI 85
Query: 150 YGTIDVHLDCEARIAKFLGTPDSILYSYG-------LSTMFSAIPCFCKKGDLIVADEGV 202
GT H+ EA +A G ++L++ G LST+ S +P G +I++DE
Sbjct: 86 SGTNHYHVLLEAELADLHGKEAALLFTSGYVSNWAALSTLGSRLP-----GCVILSDELN 140
Query: 203 HWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIA 262
H + G+ SR+ F+HND L L + KL + E+VY G IA
Sbjct: 141 HASMIEGIRHSRAEKRIFRHNDPADLERKLSDLDPH---RPKL---VAFESVYSMDGDIA 194
Query: 263 PLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG 322
P+ E+ + EK+ +LDE ++ G+ G G G+ E G+ D++ I+ + A G
Sbjct: 195 PIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGL-ADRLTIIEGTLAKAFGVMG 253
Query: 323 GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRT 382
G+ TGSA + D R +SG++F+ SLPP +A+ A+ ++ L+ + + + A LR
Sbjct: 254 GYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRA 313
Query: 383 GLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV 434
L D G+ NP S IV + M D L + I+D L G++V
Sbjct: 314 RL-DKAGIPHLPNP-SHIVPV--------MVGDPVLCKQISDELLDRYGIYV 355
>gnl|CDD|184023 PRK13392, PRK13392, 5-aminolevulinate synthase; Provisional.
Length = 410
Score = 139 bits (353), Expect = 8e-37
Identities = 95/344 (27%), Positives = 166/344 (48%), Gaps = 23/344 (6%)
Query: 97 ESAAGPHTIISG----KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGT 152
E+ P G + V + S +YLG+ H ++ + AL++YG G+ G R GT
Sbjct: 30 EAGRFPRARDHGPDGPRRVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGT 89
Query: 153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKK--GDLIVADEGVHWGIQNGL 210
H+ E +A G ++L++ G + +A+ K G +I++D H + G+
Sbjct: 90 SHPHVLLERELADLHGKESALLFTSGYVSNDAALSTLGKLLPGCVILSDALNHASMIEGI 149
Query: 211 YLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRL 270
S + F+HND+ L L V D R K I E+VY G IAP++ + L
Sbjct: 150 RRSGAEKQVFRHNDLADLEEQLASVDPD--RPK----LIAFESVYSMDGDIAPIEAICDL 203
Query: 271 KEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSAR 330
++Y ++DE ++ G+ G G G+ E G+ +D+ID++ + A GG+ SA
Sbjct: 204 ADRYNALTYVDEVHAVGLYGARGGGIAERDGL-MDRIDMIQGTLAKAFGCLGGYIAASAD 262
Query: 331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGL 390
++D R + G++F+ +LPP +A+ A AI L+ + + A L+ L+ G+
Sbjct: 263 LIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNAN-GI 321
Query: 391 SIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV 434
+ +P S IV + M D L + I+D + E G+++
Sbjct: 322 PVMPSP-SHIVPV--------MVGDPTLCKAISDRLMSEHGIYI 356
>gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional.
Length = 407
Score = 128 bits (323), Expect = 1e-32
Identities = 98/380 (25%), Positives = 170/380 (44%), Gaps = 49/380 (12%)
Query: 106 ISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAK 165
G + + S +YL L GH ++++ +AL++ G F E ++A
Sbjct: 51 TPGPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAA 110
Query: 166 FLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDM 225
F G +L G + + + D H + G+ + + F+HND+
Sbjct: 111 FTGFESCLLCQSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRHNDV 170
Query: 226 DSLRNTLERVTADNKRAKKLRRY----IVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLD 281
D LR +++ R+ IVV++VY +G IAPL +++ + E++ + +D
Sbjct: 171 DHLR-------------RQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVD 217
Query: 282 ESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSG 341
ES+S G G G GL G+ ++ +TA++ A A G T + ++ S
Sbjct: 218 ESHSLGTHGPQGAGLVAELGL-TSRVHFITASLAKAFAGRAGIITCPRELAEYVPFVSYP 276
Query: 342 YVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIV 401
+FS++L P+ + ++V+E D +L N LR GLS++ G +I S ES I+
Sbjct: 277 AIFSSTLLPHEIAGLEATLEVIESADDRRARLHANARFLREGLSEL-GYNIRS--ESQII 333
Query: 402 FLILEKSTGSMKNDLQLLEDIADWALKEDGVF------VVTSK-RSMLDKCRLPVGIRLF 454
L TGS +N ++L D AL+E VF T K R++ IRL
Sbjct: 334 AL----ETGSERN-TEVLRD----ALEERNVFGAVFCAPATPKNRNL---------IRLS 375
Query: 455 VSAAHSEADL---VKACESL 471
++A + +DL ++ C
Sbjct: 376 LNADLTASDLDRVLEVCREA 395
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 118 bits (298), Expect = 1e-29
Identities = 76/379 (20%), Positives = 143/379 (37%), Gaps = 38/379 (10%)
Query: 109 KEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLG 168
+ +N S YLG L + A + + G R YG D + +AKFLG
Sbjct: 1 TDKINLGSNEYLGD---SGTLPAVAKAEKD--ALAGGTRNLYGPTDGLPELREALAKFLG 55
Query: 169 TP--------DSILYSYGLSTMFSAIP-CFCK-KGDLIVADEGVHWGIQNGLYLSRSTVV 218
++++ G A+ GD I+ + L+ VV
Sbjct: 56 RSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVV 115
Query: 219 YFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDEL---IRLKEKYR 275
+ + + + A K A + + ++ + + +G +A L+EL + L +++
Sbjct: 116 RYPLYSSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHN 175
Query: 276 FRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEG---GFCTGSARVV 332
+ +DE+ + V G S + + +V + A G G+ G+A V+
Sbjct: 176 ILLLVDEAYAGFVFG-SLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAAVI 234
Query: 333 DHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSI 392
R + + S L A+A + V E ++ ++K+ LR GL GLS+
Sbjct: 235 SQLRKLARPFYSSTHLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAA-GLSV 293
Query: 393 ASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIR 452
++ L + L L + + L+E GV+V P +R
Sbjct: 294 LP-SQAGFFLLTG----LDPEAALALAQVL----LEEVGVYVTPGS-----SFGGPGWLR 339
Query: 453 LFVSAAHSEADLVKACESL 471
+ V A +E +L + E++
Sbjct: 340 ITV-AGGTEEELEELLEAI 357
>gnl|CDD|181006 PRK07505, PRK07505, hypothetical protein; Provisional.
Length = 402
Score = 85.4 bits (212), Expect = 5e-18
Identities = 92/396 (23%), Positives = 156/396 (39%), Gaps = 45/396 (11%)
Query: 94 PVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGV-GSCGPRGFYGT 152
V E T+ G VNF S +YLGL H ++E AL++ G R +
Sbjct: 31 TVGEREGILITLADGHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRS 90
Query: 153 IDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCK------KGDLIVADEGVHWGI 206
+ D E +++ G + ++ + +P +V D+ H +
Sbjct: 91 -QILKDLEEALSELFG-ASVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASL 148
Query: 207 QN--GLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPL 264
G+ + V HND+D+L + + NK V + VY G IAP+
Sbjct: 149 NILKGICADETEVETIDHNDLDALEDICKT----NKTV-----AYVADGVYSMGG-IAPV 198
Query: 265 DELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALATEGG 323
EL+RL+EKY +++D+++ + G++G G +++ I+ A++G A GG
Sbjct: 199 KELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASGG 258
Query: 324 FCT-GSARVVDHQRLSSSGYVFSASL--PPYLASAAITAIDVLEENPDLITKLKKNTAIL 380
G A ++ + FS SL A A I + EE L KL+ N A
Sbjct: 259 VIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIA-- 316
Query: 381 RTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWA--LKEDGVFVVTSK 438
L D + S PI + + + A L + G +
Sbjct: 317 ---LFDSLIPTEQSGSFLPIRLIYIGDE-----------DTAIKAAKQLLDRGFYTSPVF 362
Query: 439 RSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 474
++ K R G+R+ A+H+ ++ + C LK I
Sbjct: 363 FPVVAKGR--AGLRIMFRASHTNDEIKRLCSLLKEI 396
>gnl|CDD|102071 PRK05937, PRK05937, 8-amino-7-oxononanoate synthase; Provisional.
Length = 370
Score = 84.8 bits (210), Expect = 7e-18
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 14/227 (6%)
Query: 141 VGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFC----KKGDLI 196
+G G R G + D E +IA F G P++ + G + A C D +
Sbjct: 43 LGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSG----YMANLGLCAHLSSVTDYV 98
Query: 197 VADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQ 256
+ DE VH + L + F+HND+D L + LE + +R+ R +I V +VY
Sbjct: 99 LWDEQVHISVVYSLSVISGWHQSFRHNDLDHLESLLE---SCRQRSFG-RIFIFVCSVYS 154
Query: 257 NSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGH 316
G +APL+++I L +KY + +DE+++ G+ G G+G G + V
Sbjct: 155 FKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLG--YENFYAVLVTYSK 212
Query: 317 ALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL 363
AL + G S+ V L+S +S LPP+L + A D L
Sbjct: 213 ALGSMGAALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFL 259
>gnl|CDD|178541 PLN02955, PLN02955, 8-amino-7-oxononanoate synthase.
Length = 476
Score = 85.5 bits (211), Expect = 7e-18
Identities = 100/422 (23%), Positives = 180/422 (42%), Gaps = 66/422 (15%)
Query: 75 EWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTS 134
+W+ + IP EE+ + E G K+++ F+ +YLGL H + + +
Sbjct: 75 KWLHD--IPSNGEEIFSGDALAEERKG-----RFKKLLLFSGNDYLGLSSHPTISNAAAN 127
Query: 135 ALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGD 194
A ++YG+G G G H E+ +A D ++ G + +A+
Sbjct: 128 AAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKEDCLVCPTGFAANMAAMVAIGSVAS 187
Query: 195 LIVA------DEGV--------HWGIQNGLYLSR----STVVYFKHNDMDSLRNTLERVT 236
L+ A +E V H I +G+ L+ V ++H DM L + L
Sbjct: 188 LLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHCDMYHLNSLLSSCK 247
Query: 237 ADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL 296
R+ +V ++++ G AP++EL +L++KY F + +D+++ V G +G G+
Sbjct: 248 MK-------RKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGV 300
Query: 297 TEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLSSSG--YVFSASLPPYLAS 354
E D +D+ + A GGF S + Q + S G ++FS ++P +A+
Sbjct: 301 AEEFNCEAD-VDLCVGTLSKAAGCHGGFIACSKKW--KQLIQSRGRSFIFSTAIPVPMAA 357
Query: 355 AAITAIDVLEENPDLITKLKKNTAILR--TGLSDIHGLSIASNPESPIVFLILEKSTGSM 412
AA A+ V + + + AI + G+ I+ SPI+ L++ ++
Sbjct: 358 AAYAAVVVARK------EKWRRKAIWERVKEFKALSGVDIS----SPIISLVVGNQEKAL 407
Query: 413 KNDLQLLEDIADWALKEDGVFVVTSKRSML---DKCRLPVGIRLFVSAAHSEADLVKACE 469
K LL+ F V + R + CRL R+ +SAAH+ D+ K
Sbjct: 408 KASRYLLKS----------GFHVMAIRPPTVPPNSCRL----RVTLSAAHTTEDVKKLIT 453
Query: 470 SL 471
+L
Sbjct: 454 AL 455
>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme
metabolism].
Length = 432
Score = 57.2 bits (139), Expect = 7e-09
Identities = 58/285 (20%), Positives = 104/285 (36%), Gaps = 63/285 (22%)
Query: 215 STVVYFKHNDMDSLRNTLE----RVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDE 266
+ +ND+++L E + A ++VE V N G + P L+
Sbjct: 177 KHTLVLPYNDLEALEEAFEEYGDDIAA-----------VIVEPVAGNMGVVPPEPGFLEG 225
Query: 267 LIRLKEKYRFRVFLDES-NSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGF- 324
L L E++ + DE F V + G + GV + D+ T +G + GG
Sbjct: 226 LRELTEEHGALLIFDEVITGFRV---ALGGAQGYYGV---EPDLTT--LGKIIG--GGLP 275
Query: 325 ---CTGSARVVDHQRLSSSGYVFSA-SLP--PYLASAAITAIDVLEENPDLITKLKKNTA 378
G A +++ L+ G V+ A +L P +A + ++ L + +L
Sbjct: 276 IGAFGGRAEIMEQ--LAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGE 333
Query: 379 ILRTGLSDI---HGL-----SIASNPESPIVFLILEKSTGS--MKNDLQLLEDIADWALK 428
L GL HG+ + S I F + ++D++ L
Sbjct: 334 RLAEGLRAAAERHGIPLTVNRVGSMFG--IFFTEEGVRNYADAKRSDVERFAKFFHHLLN 391
Query: 429 EDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR 473
GV++ S+ F+S AH+E D+ + E+
Sbjct: 392 R-GVYLAPSQFEA-----------GFLSTAHTEEDIDRTLEAADE 424
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation.
Length = 413
Score = 54.9 bits (133), Expect = 5e-08
Identities = 59/252 (23%), Positives = 91/252 (36%), Gaps = 60/252 (23%)
Query: 249 IVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGV---LGRSGRGL-TEHC 300
++VE + G I P L L L K+ + DE V GR+G+ EH
Sbjct: 195 VIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADE-----VQTGFGRTGKMFAFEHF 249
Query: 301 GVPVDKIDIVTAAMGHALATEGGF----CTGSARVVDHQRLSSS--GYVFSASLPPYLAS 354
GV DIVT +G L GG G ++D G F + P +
Sbjct: 250 GVE---PDIVT--LGKGLG--GGLPLGAVLGREEIMDAFPAGPGLHGGTFGGN--PLACA 300
Query: 355 AAITAIDVLEENPDLITKLKKNTAILRTGLSDIH------------GLSIASNPESPIVF 402
AA+ ++VLEE L+ + LR L ++ GL I
Sbjct: 301 AALAVLEVLEE-EGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIG--------- 350
Query: 403 LILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEA 462
+ L K + D +L I A E G+ + S ++ IRL +E
Sbjct: 351 IELVKDRATKPPDKELAAKIIK-AALERGLLLRPSGGNV---------IRLLPPLIITEE 400
Query: 463 DLVKACESLKRI 474
++ + ++L
Sbjct: 401 EIDEGLDALDEA 412
>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase. This
enzyme, glutamate-1-semialdehyde-2,1-aminomutase
(glutamate-1-semialdehyde aminotransferase, GSA
aminotransferase), contains a pyridoxal phosphate
attached at a Lys residue at position 283 of the seed
alignment. It is in the family of class III
aminotransferases [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 423
Score = 46.2 bits (110), Expect = 3e-05
Identities = 65/275 (23%), Positives = 108/275 (39%), Gaps = 58/275 (21%)
Query: 223 NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAP----LDELIRLKEKYRFRV 278
ND+++L E + A ++VE V N G + P L L L E+Y +
Sbjct: 180 NDLEALEEVFEE--YGEEIAG-----VIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLL 232
Query: 279 FLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGF----CTGSARVVDH 334
DE + + G E+ GV + D+ T +G + GG G +++
Sbjct: 233 IFDEVMTGFRVALGGA--QEYFGV---EPDLTT--LGKIIG--GGLPVGAFGGRREIMER 283
Query: 335 QRLSSSGYVFSA---SLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI---H 388
L+ G V+ A S P +A + + +L+E + T+L + L GLS++
Sbjct: 284 --LAPEGPVYQAGTLSGNPLAMAAGLATLKLLDE-EGVYTELDELAKRLAEGLSEVLEDT 340
Query: 389 GLSIA-SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRL 447
G+ + S E+ + + AD A K D MLDK
Sbjct: 341 GIPHTVNRVGSMFSLFFTEEE----------VTNYAD-AKKSDTELFAKFFHEMLDK--- 386
Query: 448 PVGIRL--------FVSAAHSEADLVKACESLKRI 474
G+ L F+SAAH+E D+ E+ + +
Sbjct: 387 --GVFLPPSQFEACFLSAAHTEEDIENTIEAAEEV 419
>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine
family. This family of proteins, for which ornithine
aminotransferases form an outgroup, consists mostly of
proteins designated acetylornithine aminotransferase.
However, the two very closely related members from E.
coli are assigned different enzymatic activities. One is
acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an
enzyme of arginine biosynthesis, while another is
succinylornithine aminotransferase, an enzyme of the
arginine succinyltransferase pathway, an
ammonia-generating pathway of arginine catabolism (See
MEDLINE:98361920). Members of this family may also act
on ornithine, like ornithine aminotransferase (EC
2.6.1.13) (see MEDLINE:90337349) and on
succinyldiaminopimelate, like
N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17,
DapC, an enzyme of lysine biosynthesis) (see
MEDLINE:99175097).
Length = 379
Score = 41.6 bits (98), Expect = 7e-04
Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 23/176 (13%)
Query: 217 VVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQI-APLDELIRLKE--- 272
Y +ND++SL+ ++ TA ++VE + G A + L L+E
Sbjct: 152 FSYAPYNDIESLKKAIDDETAA----------VIVEPIQGEGGVNPASAEFLKALREICK 201
Query: 273 KYRFRVFLDESNSFGVLGRSGRGLT-EHCGVPVDKIDIVTAAMGHALATEGGFCTGSARV 331
+ DE + G+ GR+G+ EH G+ + DI+T A G G V
Sbjct: 202 DKDALLIFDEVQT-GI-GRTGKFFAYEHYGI---EPDIITLAKGLGGGVPIGATLAKEEV 256
Query: 332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI 387
+ G F + P +AA+ ++V+E+ L+ +K+ + L ++
Sbjct: 257 AEAFTPGDHGSTFGGN--PLACAAALAVLEVIEK-ERLLENVKEKGDYFKERLEEL 309
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 40.1 bits (94), Expect = 8e-04
Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 13/136 (9%)
Query: 191 KKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRR--- 247
GD ++ D H Y + + K + + K +
Sbjct: 39 GPGDEVIVDANGHGSR----YWVAAELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVA 94
Query: 248 YIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI 307
IV+ + G + PL E+ ++ ++Y + +D +++ G +P
Sbjct: 95 LIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGG-----ASPAPGVL-IPEGGA 148
Query: 308 DIVTAAMGHALATEGG 323
D+VT ++ L EGG
Sbjct: 149 DVVTFSLHKNLGGEGG 164
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 39.6 bits (93), Expect = 0.003
Identities = 76/371 (20%), Positives = 130/371 (35%), Gaps = 94/371 (25%)
Query: 160 EAR--IAKFLG--TPDSILY----SYGLSTMFSAIPCFCKKGDLIVADEGVH------WG 205
AR +A+FL + D I++ + L+ + + K GD IV + H W
Sbjct: 70 AAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPW- 128
Query: 206 IQNGLYLSRST---VVYFKHNDMDSLR-NTLERVTADNKRAKKLRRYIVVEAVYQNSGQI 261
L++ T V +D L + LE++ + + + V +G +
Sbjct: 129 ----QELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKL------VALSHVSNVTGTV 178
Query: 262 APLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI-VTAAMGHA--L 318
P+ E+ L ++ V +D + + G H + V ++ A GH L
Sbjct: 179 NPVKEIAELAHEHGALVLVDAAQAAG-----------HLPIDVQELGCDFLAFSGHKWLL 227
Query: 319 ATEG-GFCTGSARVVDHQRLSSSG-----YV--------------FSASLPPYL-ASAAI 357
G G +++ G YV F A P A
Sbjct: 228 GPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLA 287
Query: 358 TAIDVLEEN-PDLITK-LKKNTAILRTGLSDIHGLSIASNPE----SPIVFLILEKSTGS 411
A+D L E + I ++ T L GLS++ G+ I P+ + F +
Sbjct: 288 AALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHP-- 345
Query: 412 MKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAA--------HSEAD 463
D+A L E G+ V R+ C P+ L V A ++E D
Sbjct: 346 --------HDVAT-LLDEKGIAV----RAGHH-CAQPLHRLLGVDATIRASLHLYNTEED 391
Query: 464 LVKACESLKRI 474
+ + E+LK+
Sbjct: 392 VDRLLEALKKA 402
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 38.1 bits (89), Expect = 0.007
Identities = 63/341 (18%), Positives = 111/341 (32%), Gaps = 65/341 (19%)
Query: 163 IAKFLG-------TPDSILYSYGLSTMFSAIP-CFCKKGDLIVADEGVHWGIQNGLYLSR 214
IA++LG P+ I+ + G S + GD ++ + + G + L+
Sbjct: 45 IAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLAG 104
Query: 215 STVVYFKHNDMDSLRNTLERVTAD-NKRAKKLRRYIVVEAVY----QN-SGQIAPLDELI 268
+ VV ++ LE + A + K +Y N +G + +EL
Sbjct: 105 AEVVPVPLDEEGGFLLDLELLEAAKTPKTK---------LLYLNNPNNPTGAVLSEEELE 155
Query: 269 RLKE---KYRFRVFLDE------SNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA 319
L E K+ + DE + + E IV +
Sbjct: 156 ELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERV--------IVLRSFSKTFG 207
Query: 320 TEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAI--DVLEENPDLITKLK 374
G G+ + + Y S P L+ AA A D E +L + +
Sbjct: 208 LPGLRIGYLIAPPEELLERLKKLLPYTTSG--PSTLSQAAAAAALDDGEEHLEELRERYR 265
Query: 375 KNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV 434
+ L L ++ L + ++L L + E+ + L E GV V
Sbjct: 266 RRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGDD---------EEFLERLLLEAGVVV 316
Query: 435 V--TSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKR 473
++ + +RL S A E +L +A E L
Sbjct: 317 RPGSAFGEGGEGF-----VRL--SFATPEEELEEALERLAE 350
>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD corresponds to ornithine decarboxylase (ODC),
arginine decarboxylase (ADC) and lysine decarboxylase
(LDC). ODC is a dodecamer composed of six homodimers and
catalyzes the decarboxylation of tryptophan. ADC
catalyzes the decarboxylation of arginine and LDC
catalyzes the decarboxylation of lysine. Members of this
family are widely found in all three forms of life.
Length = 294
Score = 36.8 bits (86), Expect = 0.019
Identities = 29/133 (21%), Positives = 46/133 (34%), Gaps = 7/133 (5%)
Query: 155 VHLDCEARIAKFLGTPDSILYSYGLST-MFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
+ + A+ G + G S+ + I C GD I+ D H + NGL LS
Sbjct: 60 PIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLS 119
Query: 214 RSTVVYFKHNDMDSLRNTLERVTA-DNKRAKKLRRYIVVEAVYQNS---GQIAPLDELIR 269
+ VY K + + + K+A AV N G L +++
Sbjct: 120 GAVPVYLK-PERNPYYGIAGGIPPETFKKALIEHPD-AKAAVITNPTYYGICYNLRKIVE 177
Query: 270 LKEKYRFRVFLDE 282
V +DE
Sbjct: 178 EAHHRGLPVLVDE 190
>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 36.3 bits (84), Expect = 0.035
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 21/136 (15%)
Query: 249 IVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGL-TEHCGVP 303
+ E + ++G I P +L ++ +++ + +DE S LGR+G+ EH GV
Sbjct: 208 LFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSG--LGRTGKWFAIEHFGV- 264
Query: 304 VDKIDIVTAAMGHALATEGGF----CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITA 359
+ DI+T +G L GG G A ++D L + F+ S P ++AA+
Sbjct: 265 --EPDIIT--LGKPLG--GGLPISATIGRAEIMD--SLPPLAHAFTLSGNPVASAAALAV 316
Query: 360 IDVLEENPDLITKLKK 375
I+ +EE +L+ + +K
Sbjct: 317 IEEIEEK-NLLKRAEK 331
>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 35.3 bits (82), Expect = 0.061
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 355 AAITAIDVLEENPDL---ITKLKKNTAILRTGLSDIHGLSIASNPE-SPIVFLILEKSTG 410
AAI A++ + + + + ++ +L L++I GLS+ PE + +F + +
Sbjct: 277 AAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELLD 336
Query: 411 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACES 470
S E+ A L+E GV VV S + +RL S A SE L +A
Sbjct: 337 S--------EEFAKKLLEEAGVAVVPG--SGFGEPPGEGYVRL--SLATSEETLEEALRR 384
Query: 471 LKR 473
L R
Sbjct: 385 LAR 387
>gnl|CDD|201705 pfam01276, OKR_DC_1, Orn/Lys/Arg decarboxylase, major domain.
Length = 417
Score = 35.1 bits (81), Expect = 0.077
Identities = 45/229 (19%), Positives = 79/229 (34%), Gaps = 39/229 (17%)
Query: 155 VHLDCEARIAKFLGTPDSILYSYGLS----TMFSAIPCFCKKGDLIVADEGVHWGIQNGL 210
+ + A+ G S G S T+ A+ C GD ++ D H I + L
Sbjct: 67 PIKEAQKYAARVFGADKSYFVVNGTSGANKTVGMAV---CTPGDTVLIDRNCHKSIHHAL 123
Query: 211 YLSRSTVVYFKHND-----------MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG 259
+S +T VY + + T++ A+ AK R ++ Y G
Sbjct: 124 MMSGATPVYLEPTRNAYGIIGGIPLHEFQEETIKEALAEVPPAKGPRLAVITNGTY--DG 181
Query: 260 QIAPLDELIRLKEKYRFRVFLDES----NSFG--VLGRSGRGLTEHCGVPVDKIDIVTAA 313
I E++ + D + F S G D IVT +
Sbjct: 182 TIYNAKEIVDTLGHLSDYILFDSAWVGYEQFIPIYADASPMGGDNV----NDPGIIVTQS 237
Query: 314 MGHALATEGGFCTGS------ARVVDHQRLSSSGYVFSASLPPYLASAA 356
+ H L F S + +V+H+R + + + +++ P Y A+
Sbjct: 238 V-HKL--LAAFSQASQIHKKDSHIVNHKRFNEAFMMHTSTSPFYPIVAS 283
>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent
enzyme. This family includes enzymes involved in
cysteine and methionine metabolism. The following are
members: Cystathionine gamma-lyase, Cystathionine
gamma-synthase, Cystathionine beta-lyase, Methionine
gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine
sulfhydrylase All of these members participate is
slightly different reactions. All these enzymes use PLP
(pyridoxal-5'-phosphate) as a cofactor.
Length = 382
Score = 34.9 bits (81), Expect = 0.080
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL--YLSRSTV 217
E RIA G ++ +S G++ +F+A+ K GD +VA + ++ G L R +
Sbjct: 58 EERIAALEGGEAALAFSSGMAAIFAALLALLKAGDHVVATDDLYGGTYRLFEKVLPRFGI 117
Query: 218 VYFKHNDMDSLRNTLERVTADNKRA 242
D L + LE N +A
Sbjct: 118 E-VTFVDPSDL-DALEAAIKPNTKA 140
>gnl|CDD|224893 COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid
transport and metabolism].
Length = 557
Score = 34.6 bits (80), Expect = 0.11
Identities = 36/182 (19%), Positives = 58/182 (31%), Gaps = 26/182 (14%)
Query: 189 FCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRN-----TLERVTADNKRAK 243
GD ++ D H I +GL L+ +T VY + L LE
Sbjct: 106 VLTPGDKVLVDRNCHKSIHHGLILAGATPVYL-EPSRNPLYGIIGGIPLETFKEALLAHP 164
Query: 244 KLRRYIVVEAVYQNS---GQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHC 300
+ V+ N G L +++ L Y V DE++ S
Sbjct: 165 DAEKLAVI----TNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPA-HFDFSPMLPE--- 216
Query: 301 GVPVDKIDIVTAAMGHALATEGGFCTGS------ARVVDHQRLSSSGYVFSASLPPYLAS 354
D VT + H S R V+H+R + + + ++ P Y
Sbjct: 217 SALNGGADFVTQST-H--KLLAALSQASMIHVKDGRAVNHERFNEALMMHQSTSPSYPLM 273
Query: 355 AA 356
A+
Sbjct: 274 AS 275
>gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine
gamma-synthases [Amino acid transport and metabolism].
Length = 396
Score = 34.1 bits (79), Expect = 0.16
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVA 198
E +A+ G D+ +S G++ + +A+ K GD ++
Sbjct: 69 EEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLL 107
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 33.7 bits (78), Expect = 0.22
Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 249 IVVEAVYQNSGQIAP----LDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLT-EHCGVP 303
I++E + G I P L L +L ++ + DE + G GR+G+ EH GV
Sbjct: 226 IIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQT-GF-GRTGKMFAFEHFGV- 282
Query: 304 VDKIDIVTAAMGHALATEGGF----CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITA 359
+ DIVT + +L GG G A ++D G F + P +AA+
Sbjct: 283 --EPDIVT--LAKSLG--GGLPLSAVVGRAEIMDWPP-GGHGGTFGGN--PVACAAALAV 333
Query: 360 IDVLEENPDLITKLKKNTAILRTGLSDI 387
+DV+EE +L+ + + LR L ++
Sbjct: 334 LDVIEEE-NLLERAAELGEYLRDRLEEL 360
>gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 426
Score = 33.5 bits (78), Expect = 0.24
Identities = 42/159 (26%), Positives = 63/159 (39%), Gaps = 46/159 (28%)
Query: 327 GSARVVDHQRLSSSGYVFSA---SLPPYLASAA-ITAIDVLEENPDLITKLKKNTAILRT 382
G +++ L+ G V+ A S P LA AA + + +L+E P +L+ T L
Sbjct: 278 GRREIMEQ--LAPLGPVYQAGTLSGNP-LAMAAGLATLKLLKE-PGFYEELEALTKRLAE 333
Query: 383 GLSDI---HGLSIASNPESPIVFLILEKSTGSMKNDLQLL------EDIADWALKEDGVF 433
GL + G+ + N GSM L + AD A K D
Sbjct: 334 GLKEAAKKAGIPLTVN------------RVGSM---FGLFFTDEPVTNYAD-AKKSDTER 377
Query: 434 VVTSKRSMLDKCRLPVGIRL--------FVSAAHSEADL 464
+MLD+ G+ L FVSAAH++ D+
Sbjct: 378 FARFFHAMLDE-----GVYLAPSQFEAGFVSAAHTDEDI 411
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 30.6 bits (70), Expect = 1.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 334 HQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLI 370
++ LSSS Y+F + P + S+ I LE + + I
Sbjct: 96 YRLLSSSKYLFIQLIFPVIYSSFILVYGFLERDDETI 132
>gnl|CDD|235182 PRK03968, PRK03968, DNA primase large subunit; Validated.
Length = 399
Score = 30.8 bits (70), Expect = 1.6
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 47 VILFLLSQKSY-----KPPKRPLTKKEIDELCDEWVPESLIPPIIEEM--RCEPPVLESA 99
+ + L S SY PP+R + + D D + E I P+I E RC PP+ E
Sbjct: 268 ITVLLTSFLSYARLCPNPPRRDVKVSDCDP--DLRIIEEEILPLIIEAANRCSPPLFEDQ 325
Query: 100 AGPHTII 106
P I
Sbjct: 326 --PQEIK 330
>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.
Length = 396
Score = 30.5 bits (70), Expect = 2.0
Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 59/194 (30%)
Query: 217 VVYFKHNDMDSLRNTL-ERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDE--LIRLKEK 273
+Y ND+++L+ + ++ A +++E + Q G + P D+ L L+E
Sbjct: 164 FIYVPFNDIEALKAAITDKTAA-----------VMLEPI-QGEGGVNPADKEYLQALRE- 210
Query: 274 YRFRVFLDESNSFGVL-------GRSGRGLT-EHCGVPVDKIDIVTAA--------MGHA 317
DE+ +L GR+G+ +H G+ + DI+T A +G
Sbjct: 211 -----LCDENGILLILDEVQTGMGRTGKLFAYQHYGI---EPDIMTLAKGLGGGVPIGAV 262
Query: 318 LATE---GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAA-ITAIDVLEENPDLITKL 373
LA E F G DH G F + LA AA + I+++EE L+
Sbjct: 263 LAKEKVADVFTPG-----DH------GSTFGGN---PLACAAALAVIEIIEEE-GLLENA 307
Query: 374 KKNTAILRTGLSDI 387
+ LR L ++
Sbjct: 308 AEVGEYLRAKLREL 321
>gnl|CDD|220955 pfam11041, DUF2612, Protein of unknown function (DUF2612). This is
a phage protein family expressed from a range of
Proteobacteria species. The function is not known.
Length = 186
Score = 29.6 bits (67), Expect = 2.7
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 327 GSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL 363
G A V+D+ +S + YVF + A I +D+L
Sbjct: 138 GKAYVLDNYDMSMTIYVFGKPPSAAIL-AIIHGLDIL 173
>gnl|CDD|176520 cd08578, GDPD_NUC-2_fungi, Putative glycerophosphodiester
phosphodiesterase domain of ankyrin repeat protein NUC-2
and similar proteins. This subfamily corresponds to a
putative glycerophosphodiester phosphodiesterase domain
(GDPD) present in Neurospora crassa ankyrin repeat
protein NUC-2 and its Saccharomyces cerevisiae
counterpart, Phosphate system positive regulatory
protein PHO81. Some uncharecaterized NUC-2 sequence
homologs are also included in this family. NUC-2 plays
an important role in the phosphate-regulated signal
transduction pathway in Neurospora crassa. It shows high
similarity to a cyclin-dependent kinase inhibitory
protein PHO81, which is part of the phosphate regulatory
cascade in S. cerevisiae. Both NUC-2 and PHO81 have
multi-domain architecture, including an SPX N-terminal
domain following by several ankyrin repeats and a
putative C-terminal GDPD domain with unknown function.
Although the putative GDPD domain displays sequence
homology to that of bacterial glycerophosphodiester
phosphodiesterases (GP-GDEs, EC 3.1.4.46), the residues
essential for interactions with the substrates and
calcium ions in bacterial GP-GDEs are not conserved in
members of this family, which suggests the function of
putative GDPD domains in these proteins might be
distinct from those in typical bacterial GP-GDEs.
Length = 300
Score = 30.0 bits (68), Expect = 2.8
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 92 EPPVLESAAGPHTIISGKEVVNFA-SANYLGLIGHEKLLESC 132
P + A P + S KE V FA + N LGLI LL
Sbjct: 216 VDPQKLNEADPRSR-SIKEAVRFAKNNNLLGLILPYSLLNIV 256
>gnl|CDD|168320 PRK05968, PRK05968, hypothetical protein; Provisional.
Length = 389
Score = 30.0 bits (68), Expect = 2.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVA 198
E +AK G D+ ++ G++ + S + F + GD IVA
Sbjct: 69 EEMLAKLEGAEDARGFASGMAAISSTVLSFVEPGDRIVA 107
>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic.
This model represents eukaryotic protein disulfide
isomerases retained in the endoplasmic reticulum (ER)
and closely related forms. Some members have been
assigned alternative or additional functions such as
prolyl 4-hydroxylase and
dolichyl-diphosphooligosaccharide-protein
glycotransferase. Members of this family have at least
two protein-disulfide domains, each similar to
thioredoxin but with the redox-active disulfide in the
motif PWCGHCK, and an ER retention signal at the extreme
C-terminus (KDEL, HDEL, and similar motifs).
Length = 462
Score = 30.0 bits (68), Expect = 3.1
Identities = 34/156 (21%), Positives = 52/156 (33%), Gaps = 23/156 (14%)
Query: 2 ASFILNFVNTMLNRVKLALDSPSAGAVVFGV--------HISGH-LFVEVLLLVVILFLL 52
L+ + NR A V F V + L E V I L
Sbjct: 243 VDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKFPAVAIQDLE 302
Query: 53 SQKSYKPPKRPLTKKEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGK--- 109
K Y + + + ++ +++ L P + E P+ E GP ++ GK
Sbjct: 303 GNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSE-----PIPEDDEGPVKVLVGKNFD 357
Query: 110 EVVNFASANYLGLI-----GHEKLLESCTSAL-EKY 139
E+V + + L GH K L L EKY
Sbjct: 358 EIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKY 393
>gnl|CDD|237513 PRK13803, PRK13803, bifunctional phosphoribosylanthranilate
isomerase/tryptophan synthase subunit beta; Provisional.
Length = 610
Score = 29.8 bits (67), Expect = 3.7
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 222 HNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN-SGQIAPLDELIRLKEKYRFRVFL 280
++ L+ + ++ N+ K +R + QN +G+ PL E RL + Y R++L
Sbjct: 237 MANLQELQESYTKIIKSNEFQKTFKR------LLQNYAGRPTPLTEAKRLSDIYGARIYL 290
>gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and
metabolism].
Length = 342
Score = 29.6 bits (67), Expect = 4.4
Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 26/127 (20%)
Query: 352 LASAAITAIDVLEENPDLITKLKKNT--AILRTGLSDIHGLSIASNPESPIVFLILEKST 409
LA+ + A LE++ + N A L GL G+ +A E+ +VF+ L +S
Sbjct: 237 LAAQGLYA---LEDDVWRLAADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVRLPES- 292
Query: 410 GSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHSEAD---LVK 466
+ AL GV + +R S A SE D LV
Sbjct: 293 -------AIEALRLAGALFYRGVLIGAHGEI----------VRFVTSWATSEEDVDELVA 335
Query: 467 ACESLKR 473
A ++L
Sbjct: 336 AIKALLA 342
>gnl|CDD|216261 pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase
family. The members of this family are probably all
pyridoxal-phosphate-dependent aminotransferase enzymes
with a variety of molecular functions. The family
includes StsA, StsC and StsS. The aminotransferase
activity was demonstrated for purified StsC protein as
the L-glutamine:scyllo-inosose aminotransferase
EC:2.6.1.50, which catalyzes the first amino transfer in
the biosynthesis of the streptidine subunit of
streptomycin.
Length = 362
Score = 29.1 bits (66), Expect = 5.6
Identities = 37/201 (18%), Positives = 66/201 (32%), Gaps = 47/201 (23%)
Query: 259 GQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKI-DIVTAAM--G 315
GQ A +D + + ++ V D +++ G + G V D T +
Sbjct: 123 GQPADMDAIRAIAAEHGLPVIEDAAHAHG---------ATYKGKRVGTFGDAATFSFYPT 173
Query: 316 HALAT-EGGFCT----------------GSARVVDHQRLSSSGYVFSASLPPYLASAAIT 358
+ T EGG G R + ++ L AAI
Sbjct: 174 KNITTGEGGAVVTDDPELAERARCLRNHGCGRPAFRRYRHEVPLGYNYRLTEL--QAAI- 230
Query: 359 AIDVLEENPDLITKLKKNTAILRTGLSDIHGLS-IASNPESP------IVFLILEKSTGS 411
+ LE + I + ++ + L+++ G + E L+ E+ S
Sbjct: 231 GLAQLERLDEFIARRREIAELYSELLAELPGFVPLTLPTEEDDHAWHLFPILVPEERAIS 290
Query: 412 MKNDLQLLEDIADWALKEDGV 432
+L+E ALKE G+
Sbjct: 291 RD---RLVE-----ALKEAGI 303
>gnl|CDD|99740 cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family
(AHBA_syn). AHBA_syn family belongs to pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The members of this CD are
involved in various biosynthetic pathways for secondary
metabolites. Some well studied proteins in this CD are
AHBA_synthase, protein product of pleiotropic regulatory
gene degT, Arnb aminotransferase and pilin
glycosylation protein. The prototype of this family, the
AHBA_synthase, is a dimeric PLP dependent enzyme.
AHBA_syn is the terminal enzyme of
3-amino-5-hydroxybenzoic acid (AHBA) formation which is
involved in the biosynthesis of ansamycin antibiotics,
including rifamycin B. Some members of this CD are
involved in 4-amino-6-deoxy-monosaccharide D-perosamine
synthesis. Perosamine is an important element in the
glycosylation of several cell products, such as
antibiotics and lipopolysaccharides of gram-positive and
gram-negative bacteria. The pilin glycosylation protein
encoded by gene pglA, is a galactosyltransferase
involved in pilin glycosylation. Additionally, this CD
consists of ArnB (PmrH) aminotransferase, a
4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying
enzyme. This CD also consists of several predicted
pyridoxal phosphate-dependent enzymes apparently
involved in regulation of cell wall biogenesis. The
catalytic lysine which is present in all characterized
PLP dependent enzymes is replaced by histidine in some
members of this CD.
Length = 352
Score = 29.0 bits (66), Expect = 6.2
Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 44/164 (26%)
Query: 259 GQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHA- 317
G A +D ++ + +++ V D + + G + GR G G A
Sbjct: 117 GNPADMDAIMAIAKRHGLPVIEDAAQALGATYK-GR----KVG-----------TFGDAG 160
Query: 318 ---------LAT-EGGF-CTGSARVVDH-QRLSSSGYV------------FSASLPPYLA 353
L T EGG T + + + L + G ++ L
Sbjct: 161 AFSFHPTKNLTTGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEI-- 218
Query: 354 SAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPE 397
AAI + LE+ ++I + ++ + L+D+ G+ + P
Sbjct: 219 QAAI-GLAQLEKLDEIIARRREIAERYKELLADLPGIRLPDVPP 261
>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of antimicrobials
and herbicides. This subgroup also includes
cystathionine gamma-lyases (CGL), O-acetylhomoserine
sulfhydrylases and O-acetylhomoserine thiol lyases.
CGL's are very similar to CGS's. Members of this group
are widely distributed among all three forms of life.
Length = 369
Score = 28.7 bits (65), Expect = 6.3
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVA 198
E ++A G ++ +S G++ + + + K GD +VA
Sbjct: 46 EKKLAALEGGEAALAFSSGMAAISTVLLALLKAGDHVVA 84
>gnl|CDD|180809 PRK07049, PRK07049, methionine gamma-lyase; Validated.
Length = 427
Score = 28.9 bits (65), Expect = 6.9
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIV 197
E R+A + G + L+S G+S + + + F + GD+I+
Sbjct: 89 EDRLAVYEGAESAALFSSGMSAIATTLLAFVRPGDVIL 126
>gnl|CDD|224028 COG1103, COG1103, Archaea-specific pyridoxal phosphate-dependent
enzymes [General function prediction only].
Length = 382
Score = 28.6 bits (64), Expect = 7.3
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 163 IAKFLGTPDSILYSYGL-STMFSAIPCFCKKGDLIVADEGVHW 204
+A+FLG D + + G F+ + CK+GD +V D H+
Sbjct: 70 LAEFLGM-DEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHY 111
>gnl|CDD|217357 pfam03079, ARD, ARD/ARD' family. The two acireductone dioxygenase
enzymes (ARD and ARD', previously known as E-2 and E-2')
from Klebsiella pneumoniae share the same amino acid
sequence, but bind different metal ions: ARD binds Ni2+,
ARD' binds Fe2+. ARD and ARD' can be experimentally
interconverted by removal of the bound metal ion and
reconstitution with the appropriate metal ion. The two
enzymes share the same substrate,
1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield
different products. ARD' yields the alpha-keto precursor
of methionine (and formate), thus forming part of the
ubiquitous methionine salvage pathway that converts
5'-methylthioadenosine (MTA) to methionine. This pathway
is responsible for the tight control of the
concentration of MTA, which is a powerful inhibitor of
polyamine biosynthesis and transmethylation reactions.
ARD yields methylthiopropanoate, carbon monoxide and
formate, and thus prevents the conversion of MTA to
methionine. The role of the ARD catalyzed reaction is
unclear: methylthiopropanoate is cytotoxic, and carbon
monoxide can activate guanylyl cyclase, leading to
increased intracellular cGMP levels. This family also
contains other members, whose functions are not well
characterized.
Length = 157
Score = 28.1 bits (63), Expect = 7.3
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 186 IPCFCKKGDLIVADEGV-HW 204
I F +KGDLI G+ H
Sbjct: 115 IRVFVEKGDLISLPAGIYHR 134
>gnl|CDD|234625 PRK00090, bioD, dithiobiotin synthetase; Reviewed.
Length = 222
Score = 28.2 bits (64), Expect = 7.3
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 23/69 (33%)
Query: 309 IVTAAMGHALATEG-----------GFCTGSARVVD---HQRLSSSG--------YVFSA 346
+VTAA+ AL G G C + R D QRLS Y F
Sbjct: 15 VVTAALAQALREAGYSVAGYKPVQSG-CEETDRNGDALALQRLSGLPLDYEDVNPYRFEE 73
Query: 347 SLPPYLASA 355
L P+LA+A
Sbjct: 74 PLSPHLAAA 82
>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate
phosphoribosyltransferase; Provisional.
Length = 295
Score = 28.3 bits (64), Expect = 8.0
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 25 AGAVVFGVHISGHLFVEVLLLVVILFLLSQKSY 57
AG V GV +S L + LL LFL + K
Sbjct: 156 AGGVAIGVPLSPWLLLCTALLS--LFLAAGKRK 186
>gnl|CDD|234060 TIGR02919, TIGR02919, accessory Sec system glycosyltransferase
GtfB. Members of this protein family are found only in
Gram-positive bacteria of the Firmicutes lineage,
including several species of Staphylococcus,
Streptococcus, and Lactobacillus [Protein fate, Protein
modification and repair].
Length = 438
Score = 28.4 bits (64), Expect = 9.8
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 238 DNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRV 278
K+ K R+ ++ NS QI L+E+++ Y F +
Sbjct: 274 PFKKDNKYRKQALI---LTNSDQIEHLEEIVQALPDYHFHI 311
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.401
Gapped
Lambda K H
0.267 0.0712 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,059,669
Number of extensions: 2530088
Number of successful extensions: 2615
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2552
Number of HSP's successfully gapped: 65
Length of query: 483
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 382
Effective length of database: 6,457,848
Effective search space: 2466897936
Effective search space used: 2466897936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)