RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 011567
(483 letters)
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 327 bits (842), Expect = e-109
Identities = 109/389 (28%), Positives = 193/389 (49%), Gaps = 32/389 (8%)
Query: 92 EPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYG 151
++S I G+ V+ F S +YLGL +++++ ALEKYG G G R G
Sbjct: 26 YFRPIQSKQDTEVKIDGRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNG 85
Query: 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY 211
T+D+H++ E +++ ++G +IL+S G + + C + D I+ DE H I +G
Sbjct: 86 TLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSR 145
Query: 212 LSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLK 271
LS S V+ + HN+M+ LR L R+ D+ + I + ++ G I L EL +
Sbjct: 146 LSFSKVIKYGHNNMEDLRAKLSRLPEDS------AKLICTDGIFSMEGDIVNLPELTSIA 199
Query: 272 EKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARV 331
++ V +D+++S GV+G G G H G+ D +D++ +LA+ GGF G A V
Sbjct: 200 NEFDAAVMVDDAHSLGVIGHKGAGTASHFGL-NDDVDLIMGTFSKSLASLGGFVAGDADV 258
Query: 332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLS 391
+D + ++ +FSAS+ P ++ + A+++++ P+ I KL KNT + L D G
Sbjct: 259 IDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDH-GFD 317
Query: 392 IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV------VTSKRSMLDKC 445
+ ESPI+ + + S + + + L++DGVFV ++
Sbjct: 318 LG-ATESPILPIFI----RSNEKTFWVTK-----MLQDDGVFVNPVVSPAVPA----EES 363
Query: 446 RLPVGIRLFVSAAHSEADLVKACESLKRI 474
IR + A H+ + +A E + ++
Sbjct: 364 L----IRFSLMATHTYDQIDEAIEKMVKV 388
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 310 bits (796), Expect = e-102
Identities = 105/393 (26%), Positives = 176/393 (44%), Gaps = 33/393 (8%)
Query: 90 RCEPPVLESAAGP-HTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRG 148
V+E P +I GK+ + + NY+G+ ++ + ALEK+G G+CG R
Sbjct: 44 DPFAIVMEQVKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRM 103
Query: 149 FYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQN 208
GT H++ E + F GT +I++S G I KG+ ++ D H I +
Sbjct: 104 LNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYD 163
Query: 209 GLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELI 268
G + +V F+HN ++ L L R+ + + +V+E VY G IAPL E++
Sbjct: 164 GCQQGNAEIVRFRHNSVEDLDKRLGRLPKEP------AKLVVLEGVYSMLGDIAPLKEMV 217
Query: 269 RLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGS 328
+ +K+ V +DE++S G G +GRG+ E G+ +ID V ++ T GGF +
Sbjct: 218 AVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGL-EGQIDFVVGTFSKSVGTVGGFVVSN 276
Query: 329 ARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIH 388
+ RL+ Y+F+ASLPP + + A T+I L + +L N L GL +
Sbjct: 277 HPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM- 335
Query: 389 GLSIA-SNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV------VTSKRSM 441
G + +S IV ++LE D + + AL + G++V T
Sbjct: 336 GFRLGTETCDSAIVAVMLE--------DQEQAAMMWQ-ALLDGGLYVNMARPPATPA--- 383
Query: 442 LDKCRLPVGIRLFVSAAHSEADLVKACESLKRI 474
+R + A H+ A + +
Sbjct: 384 -GTFL----LRCSICAEHTPAQIQTVLGMFQAA 411
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 305 bits (783), Expect = e-100
Identities = 110/395 (27%), Positives = 193/395 (48%), Gaps = 40/395 (10%)
Query: 92 EPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYG 151
++ S + KEV+NF + NYLGL H L+++ + +E+YG G R G
Sbjct: 26 SERIITSPQNAEIKVGEKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICG 85
Query: 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY 211
T +H + E I++FLGT D+ILYS D I++DE H I +G+
Sbjct: 86 TQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFETLLGPEDAIISDELNHASIIDGIR 145
Query: 212 LSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLK 271
L ++ +K+N M L L+ R + I + V+ G IA L + L
Sbjct: 146 LCKAQRYRYKNNAMGDLEAKLKEADEKGAR----FKLIATDGVFSMDGIIADLKSICDLA 201
Query: 272 EKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSAR 330
+KY V +D+S++ G +G +GRG E+CGV D++DI+T +G AL GG+ +G
Sbjct: 202 DKYNALVMVDDSHAVGFIGENGRGTPEYCGV-ADRVDILTGTLGKALGGASGGYTSGHKE 260
Query: 331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE-ENPDLITKLKKNTAILRTGLSDIHG 389
+++ R S Y+FS ++ P + + ++ +++L+ E P L +L++N+ R G+ + G
Sbjct: 261 IIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKL-G 319
Query: 390 LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV-------VTSKRSML 442
+ PI+ ++L G + + + L ++G++V V
Sbjct: 320 FQLVPG-NHPIIPVML----GDAQLATNMAD-----HLLQEGIYVVGFSYPVV------- 362
Query: 443 DKCRLPVG---IRLFVSAAHSEADLVKACESLKRI 474
P+G IR+ +SA H++ L +A E+ ++
Sbjct: 363 -----PMGKARIRVQMSAVHTQQQLDRAIEAFGQV 392
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 304 bits (781), Expect = e-100
Identities = 112/391 (28%), Positives = 182/391 (46%), Gaps = 32/391 (8%)
Query: 92 EPPVLESAAGPH-TIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFY 150
E ++ SA T+ G V+NF + NYLGL H L+ + + ++ +G G R
Sbjct: 27 EERIITSAQQADITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFIC 86
Query: 151 GTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGL 210
GT D H + E ++A FLG D+ILYS D I++D H I +G+
Sbjct: 87 GTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGV 146
Query: 211 YLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRL 270
L ++ + +NDM L L+ R I + V+ G IA L + L
Sbjct: 147 RLCKAKRYRYANNDMQELEARLKEAREAGAR----HVLIATDGVFSMDGVIANLKGVCDL 202
Query: 271 KEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALA-TEGGFCTGSA 329
+KY V +D+S++ G +G +GRG E+C V ++DI+T +G AL GG+
Sbjct: 203 ADKYDALVMVDDSHAVGFVGENGRGSHEYCDVM-GRVDIITGTLGKALGGASGGYTAARK 261
Query: 330 RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHG 389
VV+ R S Y+FS SL P + +A+I ++++E +L +L N R +S G
Sbjct: 262 EVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA-G 320
Query: 390 LSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV------VTSKRSMLD 443
++A + I+ ++L G + L+++G++V V K
Sbjct: 321 FTLA-GADHAIIPVML----GDAVVAQKFAR-----ELQKEGIYVTGFFYPVVPK----G 366
Query: 444 KCRLPVGIRLFVSAAHSEADLVKACESLKRI 474
+ R IR +SAAH+ + +A E+ RI
Sbjct: 367 QAR----IRTQMSAAHTPEQITRAVEAFTRI 393
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 292 bits (749), Expect = 5e-95
Identities = 88/391 (22%), Positives = 155/391 (39%), Gaps = 43/391 (10%)
Query: 95 VLESAAGPHTII---SGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYG 151
+ G H ++ + + + S +YL L H + +L + F
Sbjct: 42 FDINKNGKHLVLGKQASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQ 101
Query: 152 TIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLY 211
E R+AKF G + +L G + + C+ + D H + G
Sbjct: 102 NDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGAR 161
Query: 212 LSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLK 271
+ + F HN+ D LR ++ + + IVV+++Y G IAPL EL+ +
Sbjct: 162 YANAQAHPFMHNNCDHLRMLIQ------RHGPGI---IVVDSIYSTLGTIAPLAELVNIS 212
Query: 272 EKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARV 331
+++ + +DES+S G G +G GL G+ ++ +TA++ A G + V
Sbjct: 213 KEFGCALLVDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRAGAIWCNNEV 271
Query: 332 VDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLS 391
S +FS++L PY A+ T ++++E + L + LR GLS + GL+
Sbjct: 272 NRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL-GLT 330
Query: 392 IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV-----TSKRSMLDKCR 446
I S ES I+ L D + E + D L+ +GVF
Sbjct: 331 IRS--ESQIIGLET--------GDERNTEKVRD-YLESNGVFGSVFCRPA---------- 369
Query: 447 LPVG---IRLFVSAAHSEADLVKACESLKRI 474
IRL +++ ++ + K E
Sbjct: 370 TSKNKNIIRLSLNSDVNDEQIAKIIEVCSDA 400
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 280 bits (719), Expect = 9e-91
Identities = 99/391 (25%), Positives = 167/391 (42%), Gaps = 41/391 (10%)
Query: 94 PVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRGFYGTI 153
+ AG + ++ +NF+S +YLGL H +++ + E++G+GS G G
Sbjct: 24 YPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYS 83
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLS 213
VH E +A++LG ++L+ G + + I K D I AD H + LS
Sbjct: 84 VVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLS 143
Query: 214 RSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEK 273
S + F HND+ L L ++ +V E V+ G APL E+ ++ ++
Sbjct: 144 PSQLRRFAHNDVTHLARLLASPCPG-------QQMVVTEGVFSMDGDSAPLAEIQQVTQQ 196
Query: 274 YRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD 333
+ + +D+++ GV+G GRG V K +++ G G S+ V D
Sbjct: 197 HNGWLMVDDAHGTGVIGEQGRGSCWLQKV---KPELLVVTFGKGFGVSGAAVLCSSTVAD 253
Query: 334 HQRLSSSGYVFSASLPPYLASAAITAIDVL--EENPDLITKLKKNTAILRTGLSDIHGLS 391
+ + ++S S+PP A A ++ V+ +E KL R G+ D +
Sbjct: 254 YLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQD-LPFT 312
Query: 392 IASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV-----TSKRSMLDKCR 446
+A + S I LI+ G LQL E L++ G +V T
Sbjct: 313 LA-DSCSAIQPLIV----GDNSRALQLAE-----KLRQQGCWVTAIRPPT---------- 352
Query: 447 LPVG---IRLFVSAAHSEADLVKACESLKRI 474
+P G +RL ++AAH D+ + E L
Sbjct: 353 VPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 267 bits (685), Expect = 2e-85
Identities = 99/404 (24%), Positives = 168/404 (41%), Gaps = 56/404 (13%)
Query: 95 VLESAAGPH-------TIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPR 147
+E G +++ + +YLG+ H +L + ALE G GS G R
Sbjct: 25 DIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTR 84
Query: 148 GFYGTIDVHLDCEARIAKFLGTPDSILYSYG-------LSTMFSAIPCFCKKGDLIVADE 200
GT H EA IA ++++S LST+ P G +I +D
Sbjct: 85 NISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFP-----GLIIYSDS 139
Query: 201 GVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQ 260
H + G+ + F+HND+ LR + D + I E+VY G
Sbjct: 140 LNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAA--DDPAA----PKLIAFESVYSMDGD 193
Query: 261 IAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALAT 320
P+ E+ + E++ ++DE ++ G+ G G G+ E G+ + +IDI + A
Sbjct: 194 FGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGL-MHRIDIFNGTLAKAYGV 252
Query: 321 EGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLE--ENPDLITKLKKNTA 378
GG+ SAR+VD R + G++FS SLPP +A+ A +I L+ E L + +
Sbjct: 253 FGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAK 312
Query: 379 ILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV--- 435
+L+ L + G+ I + S IV +++ D + ++D L + GV+V
Sbjct: 313 VLKMRLKAL-GMPIIDHG-SHIVPVVI--------GDPVHTKAVSDMLLSDYGVYVQPIN 362
Query: 436 --TSKRSMLDKCRLPVG---IRLFVSAAHSEADLVKACESLKRI 474
T +P G +R S H + ++ +
Sbjct: 363 FPT----------VPRGTERLRFTPSPVHDLKQIDGLVHAMDLL 396
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.6 bits (120), Expect = 8e-07
Identities = 55/348 (15%), Positives = 98/348 (28%), Gaps = 95/348 (27%)
Query: 157 LDCE------------ARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVAD--EGV 202
DC+ I + + D++ + L K + +V E V
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL------FWTLLSKQEEMVQKFVEEV 86
Query: 203 HWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIA 262
N +L M ++ T + + R YI N Q+
Sbjct: 87 L--RINYKFL------------MSPIK------TEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 263 PLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEH----CGVPVDKIDIVTAAMGHAL 318
+ RL+ + R L E L R + + G K +
Sbjct: 127 AKYNVSRLQPYLKLRQALLE------L-RPAKNVLIDGVLGSG----K---------TWV 166
Query: 319 ATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTA 378
A + Q +F +L + VLE L+ ++ N
Sbjct: 167 ALD------VCLSYKVQCKMDFK-IFWLNL-----KNCNSPETVLEMLQKLLYQIDPNW- 213
Query: 379 ILRTGLSDIHGLSIASNPESP---IVFLILEKSTGSMKNDLQLLEDIAD-WALKE-DG-- 431
T SD H +I S + L+ K +N L +L ++ + A +
Sbjct: 214 ---TSRSD-HSSNIKLRIHSIQAELRRLLKSK---PYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 432 -VFVVTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV 478
+ + T + + D L +S H L E + +
Sbjct: 267 KILLTTRFKQVTD--FLSAATTTHISLDHHSMTLTPD-EVKSLLLKYL 311
Score = 49.9 bits (118), Expect = 2e-06
Identities = 53/343 (15%), Positives = 102/343 (29%), Gaps = 94/343 (27%)
Query: 8 FVNTMLNRVKLALDSPSAGAVV--FGVHISGHLFVEVLLL----VVILFLLSQKSYKPP- 60
+ L L + F + ++LL V FL + +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLS------CKILLTTRFKQVTDFLSAATTTHISL 291
Query: 61 ---KRPLTKKEIDELCDEWV---PESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNF 114
LT E+ L +++ P+ L P E + P L +II + + +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDL-PR--EVLTTNPRRL-------SII-AESIRDG 340
Query: 115 AS-ANYLGLIGHEKL---LESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARI-AKFLGT 169
+ + + +KL +ES + LE R + + V A I L
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEY-----RKMFDRLSVFPP-SAHIPTILL-- 392
Query: 170 PDSILYSYGLSTMFSAIPCFCKKGDLIVADE-----GVHWGIQNGLYLSRSTVVYFKHND 224
S+++ + + + K L+ + +YL
Sbjct: 393 --SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-----SIYLE----------- 434
Query: 225 MDSLRNTLERVTADNKRA--KKL-RRYIVVEAVYQNSGQIAPLD-----------ELIRL 270
+V +N+ A + + Y + + + LD + I
Sbjct: 435 --------LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 271 KEKYR-FR-VFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVT 311
E+ FR VFLD F L + R + ++ +
Sbjct: 487 PERMTLFRMVFLD----FRFLEQKIRHDSTAWNASGSILNTLQ 525
Score = 45.2 bits (106), Expect = 4e-05
Identities = 65/448 (14%), Positives = 124/448 (27%), Gaps = 133/448 (29%)
Query: 60 PKRPLTKKEIDELCDE-----------WV----PESLIPPIIEE-MRCEPPVLESAAGPH 103
PK L+K+EID + W E ++ +EE +R L S
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 104 TIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVGSCGPRG-FYGTIDVHLDCEAR 162
+ ++L KY V R Y + L E R
Sbjct: 102 QRQPSMMTRMYIEQ-------RDRLYND-NQVFAKYNV----SRLQPYLKLRQAL-LELR 148
Query: 163 IAKFLGTPDSILY---SYGLSTMFSAIPCFCKKGDLIVA-DEGVHW---G---------- 205
AK + ++ G + + + C + D + W
Sbjct: 149 PAKNV-----LIDGVLGSGKTWVALDV---CLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 206 IQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLD 265
+ L + + +++ + + A +LRR + Y+N
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA------ELRRLL-KSKPYENC------- 246
Query: 266 ELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPV---DK--IDIVTAAMGHALAT 320
L+ L + + N+F + C + + K D ++AA ++
Sbjct: 247 -LLVLLNVQNAKAW----NAFNL----------SCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 321 E---GGFCTGS-----ARVVDHQRLSSSGYVFSASLP-------PYLASAAITAIDVLEE 365
+ + +D + LP P + I + +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCR---------PQDLPREVLTTNP-RRLSIIAE--SIRD 339
Query: 366 NPDLITKLKKNTAILRTGLSDIHGLSIAS-NPESP----IVFLILEKSTGSMKNDLQLLE 420
K + L+ I S+ P + S L L+
Sbjct: 340 GLATWDNWKH---VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI- 395
Query: 421 DIADWA-LKEDGVFVVTS---KRSMLDK 444
W + + V VV + K S+++K
Sbjct: 396 ----WFDVIKSDVMVVVNKLHKYSLVEK 419
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 1e-06
Identities = 81/496 (16%), Positives = 142/496 (28%), Gaps = 185/496 (37%)
Query: 62 RPLT----KKEIDELCDEWVPESLIPPIIEEMRCE-----PPVLESAAGPHTIISGKEVV 112
RPLT E L VP + +++ + P E A + E+V
Sbjct: 7 RPLTLSHGSLEHVLL----VPTASFFIA-SQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 113 NFASANYLGLIGHE----------KLLESCTSALEKYGVGSCGPRGFYGTIDVHLDCEAR 162
+LG + ++L C + E + D+H A
Sbjct: 62 ----GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE---------NCYLEGNDIH----AL 104
Query: 163 IAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKH 222
AK L D+ L K +LI +R K
Sbjct: 105 AAKLLQENDTTL---------------VKTKELIKN-----------YITARIMA---KR 135
Query: 223 NDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQ---IAPLDELIRLKEKYRFRVF 279
+ L R A+ + A++ GQ +EL L + Y V
Sbjct: 136 PFDKKSNSALFR-AVGEGNAQ-------LVAIF--GGQGNTDDYFEELRDLYQTYH--VL 183
Query: 280 LDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVD-HQRLS 338
+ + ++ S L+E +D E F G ++ + L
Sbjct: 184 VGD-----LIKFSAETLSELIRTTLD--------------AEKVFTQG----LNILEWLE 220
Query: 339 SSGYVFSASLPP--YLASAAITAIDVLEENPDLIT------------KLKKNTAILRT-- 382
+ ++ P YL S I+ P LI L LR+
Sbjct: 221 NP-----SNTPDKDYLLSIPISC-------P-LIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 383 -GLSDIHG--------LSIASNPES---------PIVFLI-LE--KSTGSMKNDLQLLED 421
G + H ++ + ES ++F I + ++ + +LED
Sbjct: 268 KGAT-GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 422 IADWALKEDGV----FVVTS-KRSMLDK------CRLP----VGIRL------FVSAAHS 460
+ +GV +++ + + LP V I L V +
Sbjct: 327 SLE---NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383
Query: 461 EADLVKACESLKRISA 476
+ L +L++ A
Sbjct: 384 Q-SLYGLNLTLRKAKA 398
Score = 40.8 bits (95), Expect = 0.001
Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 30/121 (24%)
Query: 263 PLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGHAL---A 319
++ L+ + VF RG+T VP D++ M A+
Sbjct: 1778 SIESLVEV-------VFY-------------RGMTMQVAVPRDELGRSNYGMI-AINPGR 1816
Query: 320 TEGGFCTGSARVVDHQRLSSSGYVFSAS---LPP--YLASAAITAIDVLEENPDLITKLK 374
F + + V + +G++ + Y+A+ + A+D + + I KL+
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFI-KLQ 1875
Query: 375 K 375
K
Sbjct: 1876 K 1876
Score = 40.4 bits (94), Expect = 0.001
Identities = 70/460 (15%), Positives = 133/460 (28%), Gaps = 140/460 (30%)
Query: 19 ALDSPSAG-AVVFG--------------VHISGHLFVEVLLLVVILFLLSQKSYKPPKRP 63
A+ +A +FG ++ + H+ V L+ L
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 64 LTKKEIDELCDEWV--PESLIPPIIEEMRCEPPV------LESAAGPHTII----SGKEV 111
+ + ++ L EW+ P + P ++ P+ + A H ++ G
Sbjct: 208 VFTQGLNIL--EWLENPSN-TPD--KDYLLSIPISCPLIGVIQLA--HYVVTAKLLGFTP 260
Query: 112 VNFASANYLGLIGH----------------EKLLESCTSALEK-YGVGSCGPRGF---YG 151
S G GH E S A+ + +G +
Sbjct: 261 GELRS-YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 152 TIDVHLDCEARIAKFLGTPDSILYSYGLS--TMFSAIPCFCKKGDLIVADEGVHWGIQNG 209
+ D G P +L L+ + + A + V + NG
Sbjct: 320 PPSILEDSLENNE---GVPSPMLSISNLTQEQVQDYVNKTNSHLP---AGKQVEISLVNG 373
Query: 210 LYLSRSTVV--YFKHNDMDSLRNTLERVTA----DNKRA----KKLR---RYIVVEAVYQ 256
+++ VV + + L TL + A D R +KL+ R++ V + +
Sbjct: 374 ---AKNLVVSGPPQ--SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF- 427
Query: 257 NSGQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAAMGH 316
+S + P +LI K+ + V + +PV
Sbjct: 428 HSHLLVPASDLI-NKDLVKNNVSFNAK---------------DIQIPV------------ 459
Query: 317 ALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAIT-AID-----------VLE 364
+ T D + LS S+ + I + +L+
Sbjct: 460 -------YDTFDGS--DLRVLS-------GSISERIVDCIIRLPVKWETTTQFKATHILD 503
Query: 365 ENPDLITKLKKNTAILR--TGLSDIHGLSIASNPESPIVF 402
P + L T + TG+ I ++ NP+ F
Sbjct: 504 FGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGF 543
Score = 37.0 bits (85), Expect = 0.018
Identities = 41/260 (15%), Positives = 75/260 (28%), Gaps = 80/260 (30%)
Query: 67 KEIDELCDEWVPESLIPPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGH- 125
+++ D ++ I++ + P L G GK + NY +I
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE---KGKRI----RENYSAMIFET 1695
Query: 126 --------EKLLESCTSALEKYGVGSCGPRGFYGTIDVHLD----------------CEA 161
EK+ + Y +G L E
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFR--SEKGL-------LSATQFTQPALTLMEKAAFED 1746
Query: 162 RIAKFLGTPDSIL-------YS--YGLSTMFS---AIPCFCKKGDLI-VADEGVHWGIQN 208
+K L D+ Y+ L+ + S + +G + VA G N
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 209 G--LYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAV-YQN-------- 257
+ ++ V ++L+ +ERV +VE V Y N
Sbjct: 1807 YGMIAINPGRVA--ASFSQEALQYVVERVGKRTGW--------LVEIVNY-NVENQQYVA 1855
Query: 258 SGQIAPLDELIR----LKEK 273
+G + LD + +K +
Sbjct: 1856 AGDLRALDTVTNVLNFIKLQ 1875
Score = 34.3 bits (78), Expect = 0.12
Identities = 39/203 (19%), Positives = 65/203 (32%), Gaps = 78/203 (38%)
Query: 314 MGHALATEGGFCTGSARVV----DHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDL 369
MG L + +A+ V D+ + G FS +D++ NP
Sbjct: 1631 MGMDLYKT----SKAAQDVWNRADNHFKDTYG--FSI-------------LDIVINNPVN 1671
Query: 370 IT---------KLKKN-TAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSM----KND 415
+T ++++N +A++ + D I I E ST K
Sbjct: 1672 LTIHFGGEKGKRIRENYSAMIFETIVD------GKLKTEKIFKEINEHSTSYTFRSEKGL 1725
Query: 416 L------Q---LLEDIADWA-LKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAHS--E-- 461
L Q L + A + LK G+ + F A HS E
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKGLIPADA---------------TF--AGHSLGEYA 1768
Query: 462 ADLVKACESLKRISAVV--LRDR 482
A L + + I ++V + R
Sbjct: 1769 A-LASLADVMS-IESLVEVVFYR 1789
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 48.2 bits (115), Expect = 3e-06
Identities = 48/368 (13%), Positives = 100/368 (27%), Gaps = 55/368 (14%)
Query: 135 ALEKYGVG--SCGPRGFYG-----TIDVHLDCEARIAKFLGTPDSILYSYGLST-MFSAI 186
AL ++G G C T +H ++ KFLG D + G F+ +
Sbjct: 28 ALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGC-DVARVTNGAREAKFAVM 86
Query: 187 PCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLR 246
KK +V DE H+ + + D T E + KK
Sbjct: 87 HSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRG 146
Query: 247 RYIVVEAVYQNS---GQIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVP 303
++ + G + + ++ ++ +Y + ++ + + G + P
Sbjct: 147 EVVLA-LITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRM-------------P 192
Query: 304 VDKIDI---VTAAMGHALA---TEGGFCTGSARVVDHQRLSSSGY---------VFSASL 348
V +I GH G + S Y +
Sbjct: 193 VSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGA 252
Query: 349 PPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKS 408
A + + E + + + + + NP +
Sbjct: 253 TIITLMA---SFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNP----------HN 299
Query: 409 TGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRL-FVSAAHSEADLVKA 467
M ++L +I+ A K + + + + S+ ++
Sbjct: 300 HDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYV 359
Query: 468 CESLKRIS 475
+ K I
Sbjct: 360 LNAFKEII 367
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A
{Staphylococcus aureus}
Length = 446
Score = 43.7 bits (103), Expect = 1e-04
Identities = 34/195 (17%), Positives = 68/195 (34%), Gaps = 18/195 (9%)
Query: 176 SYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERV 235
+ G+ ++ + F +K I+ VH + + L +S+ + L N +V
Sbjct: 82 TSGILSVIQS---FSQKKGDILMARNVHKSVLHALDISQQEGHFI-ETHQSPLTNHYNKV 137
Query: 236 TADNKRAKKLRRYIVVEAVYQNSGQIAPLDELIRLKEKYRFRVFLDESNS--FGVLGRSG 293
+ ++ Y G+ ++E+I+ + V +DE++ FG+ G
Sbjct: 138 NLSRLNNDGHKLVVLTYPNYY--GETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPD 195
Query: 294 RGLTEHCGVPVDKIDIVTAAMGHALA--TEGGFCTGSARVVDHQRLSSSGYVFSASLPPY 351
L + D V + L T G + + F S P Y
Sbjct: 196 STL--NYQA-----DYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSY 248
Query: 352 LASAAI-TAIDVLEE 365
L A++ +A +
Sbjct: 249 LIMASLESAAQFYKT 263
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
{Escherichia coli}
Length = 755
Score = 40.9 bits (95), Expect = 0.001
Identities = 51/337 (15%), Positives = 99/337 (29%), Gaps = 38/337 (11%)
Query: 154 DVHLDCEARIAKFLGTPDSILYSYGLST-MFSAIPCFCKKGDLIVADEGVHWGIQNGLYL 212
+ E A+ G S G S + + D++V D H I+ GL L
Sbjct: 205 GAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLML 264
Query: 213 SRSTVVYFK-----------HNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS--- 258
+ + VY + TL++ +++ K V N
Sbjct: 265 TGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYD 324
Query: 259 GQIAPLDELIRLKEKYRFRVFLDES----NSFGVLGRSGRGLTEHCGVPVDKIDIVTAAM 314
G E L EK R+ DE+ F + + G T +
Sbjct: 325 GVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHST 384
Query: 315 GHALA--TEGGF--CTGSARVVDHQRLSSSGYVFSASLPPYLASAAI-TAIDVLEENP-- 367
L ++ + ++ R + + + + + P Y A+ A+ +++ N
Sbjct: 385 HKLLNALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGL 444
Query: 368 DLITKLKKNTAILRTGLSDIHGLSIAS--------NPESPIVFLILEKSTGSMKNDLQLL 419
L ++ R ++ ++ A N E + + L
Sbjct: 445 SLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLT 504
Query: 420 EDIADWALKED----GVFVVTSKRSMLDKCRLPVGIR 452
W + G + SMLD ++ +
Sbjct: 505 TVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAP 541
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 38.9 bits (90), Expect = 0.003
Identities = 46/328 (14%), Positives = 98/328 (29%), Gaps = 55/328 (16%)
Query: 154 DVHLDCEARIAKFLGTPDSILY----SYGLSTMFSAIPCFCKKGDLIVADEGVHWGIQNG 209
H + E IA+ S + S + G I+ D H + +
Sbjct: 195 GPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMY---SAPAGSTILIDRNCHKSLTHL 251
Query: 210 LYLSRSTVVYFKHNDMDSL------------RNTLERVTADNKRAKKLRRYIVVEAVYQN 257
+ +S T +YF ++ T+ + + A ++ + Y
Sbjct: 252 MMMSDVTPIYF-RPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYD- 309
Query: 258 SGQIAPLDELIRLKEKYRFRVFLDESN-SFGVLGRSGRGLTEHCGVPVD-KIDIVTAAMG 315
G + D + + + D + + G G V+ K+ T +
Sbjct: 310 -GLLYNTDFIKKTLDVKSIHF--DSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQST- 365
Query: 316 HALATEGGFCTGS----ARVVDHQRLSSSGYVFSASLPPYLASAAI-TAIDVLEENP--D 368
H F S V+ + + + + + + P Y A+ TA +++ N
Sbjct: 366 H--KLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKR 423
Query: 369 LITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALK 428
LI + R + + S F + + ++ W L+
Sbjct: 424 LINGSIERAIKFRKEIKRLRTESD------GWFFDVWQP---------DHIDTTECWPLR 468
Query: 429 ED----GVFVVTSKRSMLDKCRLPVGIR 452
D G + ++ LD ++ +
Sbjct: 469 SDSTWHGFKNIDNEHMYLDPIKVTLLTP 496
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 37.5 bits (88), Expect = 0.008
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 17/105 (16%)
Query: 289 LGRSGRGL-TEHCGV-PVDKIDIVTAAMGHALATEGGF----CTGSARVVDHQRLSSSGY 342
GR+G E GV P D+ T ++A GGF TG A V+D G
Sbjct: 245 AGRTGTLFAMEQMGVAP----DLTT--FAKSIA--GGFPLAGVTGRAEVMDAVAPGGLGG 296
Query: 343 VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI 387
++ + P AA+ + V E+ +L+ K L+ GL I
Sbjct: 297 TYAGN--PIACVAALEVLKVFEQ-ENLLQKANDLGQKLKDGLLAI 338
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus
thermophilus}
Length = 424
Score = 37.1 bits (87), Expect = 0.010
Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 35/139 (25%)
Query: 352 LASAA-ITAIDVLEENPDLITKLKKNTAILRTGLSDI---HGLSIASNPESPIVFLILEK 407
LA AA + +++LEENP L+ A L GL ++ GL N
Sbjct: 304 LAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVN------------ 351
Query: 408 STGSMK----NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRL--------FV 455
GSM + + D A + D +LD+ GI F+
Sbjct: 352 RVGSMITVFFTE-GPVVTFQD-ARRTDTELFKRFFHGLLDR-----GIYWPPSNFEAAFL 404
Query: 456 SAAHSEADLVKACESLKRI 474
S AH E D+ K E+L++
Sbjct: 405 SVAHREEDVEKTLEALRKA 423
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6,
pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A
{Pseudomonas fluorescens} SCOP: c.67.1.3
Length = 416
Score = 37.0 bits (86), Expect = 0.013
Identities = 49/373 (13%), Positives = 98/373 (26%), Gaps = 95/373 (25%)
Query: 153 IDVHLDCEARIAKFLGT-PDSILY----SYGLSTMFSAI----PCFCKKGDLIVADEG-- 201
D+ R+A +G ++ S L + SA + +IV +
Sbjct: 70 RDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNF 129
Query: 202 --VHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG 259
+ + L+ + +DS + + D +++ V +G
Sbjct: 130 PTDLYIAEG---LADMLQQGYTLRLVDSPEELPQAIDQDT-------AVVMLTHVNYKTG 179
Query: 260 QIAPLDELIRLKEKYRFRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDIVTAA-----M 314
+ + L L + D ++S G V + + A
Sbjct: 180 YMHDMQALTALSHECGALAIWDLAHSAG-----------AVPVDLHQAGADYAIGCTYKY 228
Query: 315 GHALATEGGFCTGSARVVDHQRLSSSGYV--------------------FSASLPPYLAS 354
+ F S ++ D SG+ + P +
Sbjct: 229 LNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSL 288
Query: 355 AAITA-IDVLEEN--PDLITKLKKNTAILRTGLSD---IHGLSIAS--NPE--SPIVFLI 404
A + +DV + L K T + + H L++ + V
Sbjct: 289 AMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFE 348
Query: 405 LEKSTGSMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRLFVSAAH---SE 461
+ + AL + GV D R P +R +
Sbjct: 349 HPEG-----------YAVIQ-ALIDRGVIG--------D-YREPRIMR--FGFTPLYTTF 385
Query: 462 ADLVKACESLKRI 474
++ A + L I
Sbjct: 386 TEVWDAVQILGEI 398
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 36.8 bits (86), Expect = 0.015
Identities = 20/130 (15%), Positives = 45/130 (34%), Gaps = 19/130 (14%)
Query: 354 SAAITAIDVLEENPDLITKLKKNTAILRTGLSDI---HGLSIASNPESPIVFLILEKSTG 410
+AAI AID + E D+ K+ R ++ + GL+ + L+
Sbjct: 312 AAAIAAIDTILE-DDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPN 370
Query: 411 SMKNDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRL------FVSAAHSEADL 464
+ + + D + + +++ + G+ + F+SA H +
Sbjct: 371 TTDTGSITRAE----VARPDVKMIAAMRMALILE-----GVDIGGRGSVFLSAQHEREHV 421
Query: 465 VKACESLKRI 474
+ R+
Sbjct: 422 EHLVTTFDRV 431
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 36.4 bits (85), Expect = 0.016
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 17/105 (16%)
Query: 289 LGRSGRGL-TEHCGV-PVDKIDIVTAAMGHALATEGGF----CTGSARVVDHQRLSSSGY 342
R+G +EH G+ P DIVT M +A GG TG A ++D G
Sbjct: 271 FARTGAWFASEHEGIVP----DIVT--MAKGIA--GGMPLSAVTGRAELMDAVYAGGLGG 322
Query: 343 VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI 387
+ + P +AA+ A+ V+ E DL + + A + + LS +
Sbjct: 323 TYGGN--PVTCAAAVAALGVMREL-DLPARARAIEASVTSRLSAL 364
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 36.4 bits (85), Expect = 0.018
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 17/105 (16%)
Query: 289 LGRSGRGL-TEHCGV-PVDKIDIVTAAMGHALATEGGF----CTGSARVVDHQRLSSSGY 342
R+G EH G+ P D++ +A GG TG A ++D +S G
Sbjct: 273 FARTGAMFACEHEGIDP----DLIV--TAKGIA--GGLPLSAVTGRAEIMDSPHVSGLGG 324
Query: 343 VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI 387
+ + P +AA+ I+ +E L+ + ++ I++ L +
Sbjct: 325 TYGGN--PIACAAALATIETIESE-GLVARAQQIEKIMKDRLGRL 366
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 34.8 bits (81), Expect = 0.059
Identities = 26/139 (18%), Positives = 44/139 (31%), Gaps = 35/139 (25%)
Query: 352 LASAA-ITAIDVLEENPDLITKLKKNTAILRTGLSDI---HGLSIASNPESPIVFLILEK 407
+A AA + + + + L + T L TGL + + N
Sbjct: 306 IAMAAGFACLTEISQ-VGVYETLTELTDSLATGLRHAAKEENIPLVVN------------ 352
Query: 408 STGSMK----NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRL--------FV 455
G M + + D + D ML++ G+ L F+
Sbjct: 353 HVGGMFGLFFTNADTVTCYQD-VMNCDVERFKRFFHLMLEE-----GVYLAPSAFEAGFM 406
Query: 456 SAAHSEADLVKACESLKRI 474
S AHS D+ K + +R
Sbjct: 407 SLAHSNEDIQKTVNAARRC 425
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 33.3 bits (77), Expect = 0.19
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 18/105 (17%)
Query: 289 LGRSGRGL-TEHCGV-PVDKIDIVTAAMGHALATEGGF----CTGSARVVDHQRLSSSGY 342
L RSGR EH G P DI+ +G L GG A ++D + +
Sbjct: 247 LARSGRLHCFEHEGFVP----DILV--LGKGLG--GGLPLSAVIAPAEILDCAS-AFAMQ 297
Query: 343 VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI 387
+ P A+A + ++ ++ + DL ++ +LR GLS++
Sbjct: 298 TLHGN--PISAAAGLAVLETIDRD-DLPAMAERKGRLLRDGLSEL 339
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 33.2 bits (77), Expect = 0.20
Identities = 29/140 (20%), Positives = 47/140 (33%), Gaps = 38/140 (27%)
Query: 352 LASAA-ITAIDVLEENPDLITKLKKNTAILRTGLSDI---HGLSIASNPESPIVFLILEK 407
+ AA + + LEE + + ++ L S++ GL N
Sbjct: 309 ITMAAGLATLKALEE-EPVYSVSREAAKALEEAASEVLDRTGLPYTIN------------ 355
Query: 408 STGSMKNDLQLL---EDIADW--ALKEDGVFVVTSKRSMLDKCRLPVGIRL--------F 454
SM +QL E++++ A K D F V ML + G+ + F
Sbjct: 356 RVESM---MQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRR-----GVFIAPSNLEAVF 407
Query: 455 VSAAHSEADLVKACESLKRI 474
H L A E L+
Sbjct: 408 TGLPHQGEALEIAVEGLRSS 427
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 33.2 bits (77), Expect = 0.20
Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 38/148 (25%)
Query: 352 LASAA-ITAIDVLEENPDLITKLKKNTAILRTGLSDI---HGLSIASNPESPIVFLILEK 407
+ A+ I ++VL++ L KL + A L G+ + H + I N
Sbjct: 308 ASMASGIACLEVLQQ-EGLYEKLDELGATLEKGILEQAAKHNIDITLN------------ 354
Query: 408 STGSMKNDLQLL---EDIADW--ALKEDGVFVVTSKRSMLDKCRLPVGIRL--------F 454
L + I D+ A DG + ML + G+ L F
Sbjct: 355 RLKGA---LTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQE-----GVNLAPSKYEAWF 406
Query: 455 VSAAHSEADLVKACESLKRISAVVLRDR 482
++ H++ D+ E++ R A + ++
Sbjct: 407 LTTEHTKEDIEYTIEAVGRAFAALADNK 434
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 32.6 bits (75), Expect = 0.27
Identities = 20/147 (13%), Positives = 37/147 (25%), Gaps = 40/147 (27%)
Query: 352 LASAA-ITAIDVLEENPDLITKLKKNTAILRTGLSDI---HGLSIASNPESPIVFLILEK 407
L +A A+ + + L + R L+ I + +
Sbjct: 340 LTMSAGHAALTQIYT-RQAASDLSASGDRFRANLNRIAVENQAPLQFT------------ 386
Query: 408 STGSMKNDLQLL---EDIADW--ALKEDGVFVVTSKRSMLDKCRLPVGIRL--------F 454
GS+ + I D ML K GI L
Sbjct: 387 GLGSL---GTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRK-----GIYLAPRGMYALS 438
Query: 455 VSAAHSEADLVKAC--ESLKRISAVVL 479
+ A + D + + A+++
Sbjct: 439 LEIADAGRDAFAEALADFIGEQRALLM 465
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent
aminotransferase; 2.05A {Chlamydia trachomatis} PDB:
3asb_A*
Length = 400
Score = 32.2 bits (74), Expect = 0.34
Identities = 21/129 (16%), Positives = 47/129 (36%), Gaps = 34/129 (26%)
Query: 355 AAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFL-ILEKSTGSMK 413
A + + + + I ++N+ +LR L G + +P +++ + +
Sbjct: 284 AGVAGLS-ILPQLEAIHYYRENSDLLRKALLAT-GFEVFGGEHAPYLWVKPTQANISD-- 339
Query: 414 NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLP-VG--------IRLFVSAAHSEADL 464
D+ D+ L+E + + P +G +R S+ D+
Sbjct: 340 ------RDLFDFFLREYHIAIT------------PGIGFGRSGSGFVRF--SSLGKREDI 379
Query: 465 VKACESLKR 473
+ ACE L+
Sbjct: 380 LAACERLQM 388
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 32.2 bits (74), Expect = 0.40
Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 21/102 (20%)
Query: 375 KNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFV 434
L GL + G+ + E+ I+F L+ + D AL + G
Sbjct: 271 AAAQRLAQGLEGLGGVEVLGGTEANILFCRLD-------------SAMID-ALLKAGFGF 316
Query: 435 VTSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISA 476
+ P +R S A + D+ ++ +
Sbjct: 317 YHDRWG-------PNVVRFVTSFATTAEDVDHLLNQVRLAAD 351
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 31.8 bits (73), Expect = 0.55
Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 37/184 (20%)
Query: 217 VVYFKHNDMDSLRNTLE--RVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDE--LIRLKE 272
++D+++L L+ V A +VE + Q + + L + +
Sbjct: 193 FSKVPYDDLEALEEELKDPNVCA-----------FIVEPI-QGEAGVIVPSDNYLQGVYD 240
Query: 273 ---KYRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATEGGF---- 324
KY DE + G LGR+G+ L H V K D++ +G AL+ GG
Sbjct: 241 ICKKYNVLFVADEVQT-G-LGRTGKLLCVHHYNV---KPDVIL--LGKALS--GGHYPIS 291
Query: 325 -CTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTG 383
+ ++ + G + + P AS + A++VL L +K
Sbjct: 292 AVLANDDIMLVIKPGEHGSTYGGN--PLAASICVEALNVLIN-EKLCENAEKLGGPFLEN 348
Query: 384 LSDI 387
L
Sbjct: 349 LKRE 352
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'-
phosphate, calcium binding site, structural genomics,
PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP:
c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Length = 347
Score = 31.5 bits (72), Expect = 0.59
Identities = 57/345 (16%), Positives = 110/345 (31%), Gaps = 76/345 (22%)
Query: 160 EARIAKFLGTPDSILYSYGLSTM--FSAIPCFCKKGDLIVADEGVHWGIQN----GL-YL 212
E A+ G ++ G TM +I ++GD ++ + H I + L
Sbjct: 44 ERLAAETFGKEAALFVPSG--TMGNQVSIMAHTQRGDEVILEADSH--IFWYEVGAMAVL 99
Query: 213 SRSTVVYFKHND--MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNS-GQIAPLDELIR 269
S + MD + + + I +E + S G++ PL+ +
Sbjct: 100 SGVMPHPVPGKNGAMDP--DDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKE 157
Query: 270 LKEKYR---FRVFLDESNSFGVLGRSGRGLTEHCGVPVDKIDI-----VTAAMGHALATE 321
+ + V +D + F SG + E+ G D + + A +G +
Sbjct: 158 ICTIAKEHGINVHIDGARIFNASIASGVPVKEYAG-YADSVMFCLSKGLCAPVGSVVV-- 214
Query: 322 GGFCTGSARVVDHQR---------LSSSGYVFSASLPPYLASAAITAIDVLEENPDLITK 372
G ++ R + +G LA+A I A L + D + +
Sbjct: 215 -----GDRDFIERARKARKMLGGGMRQAGV---------LAAAGIIA---LTKMVDRLKE 257
Query: 373 LKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGV 432
+N L L +I + ++ +V L + + + L+ GV
Sbjct: 258 DHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNA-------HGFIEA-LRNSGV 309
Query: 433 FVVTSKRSMLDKCRLPVGIRLFVSAAH---SEADLVKACESLKRI 474
IRL H S D+ +A +++
Sbjct: 310 LANAVS---------DTEIRL---VTHKDVSRNDIEEALNIFEKL 342
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 31.7 bits (73), Expect = 0.61
Identities = 30/139 (21%), Positives = 46/139 (33%), Gaps = 36/139 (25%)
Query: 352 LASAA-ITAIDVLEENPDLITKLKKNTAILRTGLSDI---HGLSIASNPESPIVFLILEK 407
LA A I +++L + P L + T L GL I G +
Sbjct: 305 LAMTAGIKTLELLRQ-PGTYEYLDQITKRLSDGLLAIAQETGHAACGG------------ 351
Query: 408 STGSMK----NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRL--------FV 455
M + + + D A K D R ML++ GI L F
Sbjct: 352 QVSGMFGFFFTE-GPVHNYED-AKKSDLQKFSRFHRGMLEQ-----GIYLAPSQFEAGFT 404
Query: 456 SAAHSEADLVKACESLKRI 474
S AH+E D+ + + +
Sbjct: 405 SLAHTEEDIDATLAAARTV 423
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 31.4 bits (72), Expect = 0.76
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 19/107 (17%)
Query: 289 LGRSGRGL-TEHCGV-PVDKIDIVTAAMGHALATEGGF----CTGSARVVD--HQRLSSS 340
+GR+G + GV P DI+T + L G SA + + H+
Sbjct: 249 VGRTGTMFACQRDGVTP----DILT--LSKTLG--AGLPLAAIVTSAAIEERAHELGYLF 300
Query: 341 GYVFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDI 387
+ P A+ + +DV++ + L+ + LR GL D+
Sbjct: 301 YTTHVSD--PLPAAVGLRVLDVVQRD-GLVARANVMGDRLRRGLLDL 344
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 31.1 bits (71), Expect = 0.86
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 16/107 (14%)
Query: 289 LGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATEGGFCTGSARVVDHQRLS-----SSGY 342
L R+GR L ++ V + DIV +G AL+ GG SA + D + G
Sbjct: 269 LARTGRWLAVDYENV---RPDIVL--LGKALS--GGLYPVSAVLCDDDIMLTIKPGEHGS 321
Query: 343 VFSASLPPYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHG 389
+ + P AI A++VLEE +L K ILR L +
Sbjct: 322 TYGGN--PLGCRVAIAALEVLEE-ENLAENADKLGIILRNELMKLPS 365
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 30.5 bits (70), Expect = 1.2
Identities = 30/145 (20%), Positives = 52/145 (35%), Gaps = 41/145 (28%)
Query: 352 LASAA-ITAIDVLEENPDLITKLKKNTAILRTGLSDI---HGLSIASNPESPIVFLILEK 407
LA AA + L P+ + ++ +L GL HG+ N
Sbjct: 306 LAMAAGYETLVQL--TPESYVEFERKAEMLEAGLRKAAEKHGIPHHIN------------ 351
Query: 408 STGSMK----NDLQLLEDIADWALKEDGVFVVTSKRSMLDKCRLPVGIRL--------FV 455
GSM D + + + A + F R M+++ G+ L F+
Sbjct: 352 RAGSMIGIFFTD-EPVINYDA-AKSSNLQFFAAYYREMVEQ-----GVFLPPSQFEGLFL 404
Query: 456 SAAHSEADLVK----ACESLKRISA 476
S HS+AD+ A ++ ++ A
Sbjct: 405 STVHSDADIEATIAAAEIAMSKLKA 429
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 30.2 bits (69), Expect = 1.5
Identities = 34/170 (20%), Positives = 58/170 (34%), Gaps = 35/170 (20%)
Query: 323 GFCTGSARVVD-----HQRLSSSGYVFSASLPPYLASAAITAID-VLEENPDLITKLKKN 376
G+ + +V D VF +A A+ +LE N ++ ++N
Sbjct: 232 GWVAANHQVTDILRDYRDYTMICAGVFDD----LVAQLALAHYQEILERNRHIL---EEN 284
Query: 377 TAILRTGLSDIHGLSIASNPE-SPIVFLILEKSTGSMKNDLQLLEDIADWALKEDGVFVV 435
AIL + + +S P F+ + ED L+E GV +V
Sbjct: 285 LAILDQWIEEEPLVSYI-RPAVVSTSFVKIAVDMPM--------EDFCLQLLQEHGVLLV 335
Query: 436 TSKRSMLDKCRLPVGIRLFVSAAHSEADLVKACESLKRISAVV--LRDRN 483
R D +RL A + L+K L+++S + N
Sbjct: 336 PGNRFERDGY-----VRL--GFACEQETLIKG---LEKLSQFLRRFDKEN 375
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 29.8 bits (68), Expect = 1.8
Identities = 41/189 (21%), Positives = 66/189 (34%), Gaps = 44/189 (23%)
Query: 217 VVYFKHNDMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSGQIAPLDE--LIRLKE-- 272
++ + D+++L+ + TA A ++E + Q I L E
Sbjct: 164 IIVIPYGDLEALKAAITPNTA----A------FILEPI-QGEAGINIPPAGFLKEALEVC 212
Query: 273 -KYRFRVFLDESNSFGVLGRSGRGL-TEHCGVPVDKIDIVTAAMGHALATEGGFCTGSAR 330
K DE + G LGR+G+ + V D+ +G AL GG S
Sbjct: 213 KKENVLFVADEIQT-G-LGRTGKVFACDWDNV---TPDMYI--LGKALG--GGVFPISCA 263
Query: 331 VVDHQRLSSSGYVFSASLP----------PYLASAAITAIDVLEENPDLITKLKKNTAIL 380
+ L VF P P + +I A++VLEE L + + L
Sbjct: 264 AANRDILG----VFE---PGSHGSTFGGNPLACAVSIAALEVLEE-EKLTERSLQLGEKL 315
Query: 381 RTGLSDIHG 389
L +I
Sbjct: 316 VGQLKEIDN 324
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics
center for infectious disease, S mycobacterium, PLP,
schiff base; HET: LLP; 1.85A {Mycobacterium
tuberculosis}
Length = 414
Score = 29.8 bits (68), Expect = 2.3
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 22/83 (26%)
Query: 160 EARIAKFLGTPDSILYSYGLSTMFSAIPCFCKKGDLIVADEGV-------------HWGI 206
E R+ G P + + G++ +F+++ GD +VA + WG+
Sbjct: 87 EERLRLIEGAPAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGV 146
Query: 207 QNGLYLSRSTVVYFKHNDMDSLR 229
V+ +D+
Sbjct: 147 ---------QTVFVDGDDLSQWE 160
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE
structural genomics, JCSG, protein structure initiative;
HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Length = 396
Score = 29.5 bits (67), Expect = 2.9
Identities = 34/214 (15%), Positives = 65/214 (30%), Gaps = 65/214 (30%)
Query: 83 PPIIEEMRCEPPVLESAAGPHTIISGKEVVNFASANYLGLIGHEKLLESCTSALEKYGVG 142
I + + S Y G +L ++C + L+
Sbjct: 46 KVITDALT------ASLHELE--------------KYPLTAGLPELRQACANWLK----- 80
Query: 143 SCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLSTMFSAI--PCFCKKGDLIVA-D 199
R + G + +D + I LG+ + L + + P IV+ +
Sbjct: 81 ----RRYDG---LTVDADNEILPVLGSRE------ALFSFVQTVLNPVSDGIKPAIVSPN 127
Query: 200 EG--VHWGIQNGLYLSRSTVVYFKHNDMDSLRNTLERVTADN-KRAKKLRRYIVVEAVYQ 256
++ G L + + + ++ + KR K V+
Sbjct: 128 PFYQIYEG---ATLLGGGEIHFANCPAPSFNPD-WRSISEEVWKRTK---------LVFV 174
Query: 257 NS-----GQIAPLD---ELIRLKEKYRFRVFLDE 282
S G + LD E+ L++KY F + DE
Sbjct: 175 CSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDE 208
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase,
transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Length = 147
Score = 27.8 bits (61), Expect = 5.3
Identities = 17/75 (22%), Positives = 25/75 (33%)
Query: 350 PYLASAAITAIDVLEENPDLITKLKKNTAILRTGLSDIHGLSIASNPESPIVFLILEKST 409
AI AID D I + K++ +L T + S P FL+L
Sbjct: 44 DENVKCAIVAIDTSMRMQDFINEDNKDSFVLSTDVLSALFYKYLSQPFYQHDFLVLTDCV 103
Query: 410 GSMKNDLQLLEDIAD 424
+ + I D
Sbjct: 104 SRINELKSIRATITD 118
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 28.4 bits (64), Expect = 5.3
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 12/50 (24%)
Query: 80 SLIPPIIEEM-RCEPPVLESA---------AGPHTIISGKEV-VNFASAN 118
IP I+EE+ R PP + AG I + V SAN
Sbjct: 272 GRIPAIVEEVLRYRPPFPQMQRTTTKATEVAG-VPIPADVMVNTWVLSAN 320
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 28.4 bits (64), Expect = 5.6
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 12/50 (24%)
Query: 80 SLIPPIIEEM-RCEPPVLESA---------AGPHTIISGKEV-VNFASAN 118
IP +EE+ R PV A TI +G+ V + + SAN
Sbjct: 281 EGIPDAVEELLRLTSPVQGLARTTTRDVTIGD-TTIPAGRRVLLLYGSAN 329
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate
aminotransferase, archaea, thermococcus L transferase;
HET: PMP; 2.30A {Thermococcus litoralis}
Length = 407
Score = 28.0 bits (63), Expect = 7.4
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 224 DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN-SGQIAPLD---ELIRLKEKYRF 276
+D L ++ + A ++ K + Y + QN G ++ L+ + KY
Sbjct: 157 RVDLLEEKIKELKAKGQKVKLI--YTI--PTGQNPMGVTMSMERRKALLEIASKYDL 209
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_D*
Length = 1407
Score = 28.0 bits (63), Expect = 8.3
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 225 MDSLRNTLERVTADNKRAKKLRRYIVVEAVYQNSG 259
+ LR L ++ KR K +R ++EA + SG
Sbjct: 198 CEQLREELNETNSETKRKKLTKRIKLLEA-FVQSG 231
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 28.1 bits (63), Expect = 8.5
Identities = 14/50 (28%), Positives = 17/50 (34%), Gaps = 12/50 (24%)
Query: 80 SLIPPIIEEM-RCEPPVLESA---------AGPHTIISGKEV-VNFASAN 118
SL+P I E R +PPV G I V +AN
Sbjct: 300 SLVPRAIAETLRYKPPVQLIPRQLSQDTVVGG-MEIKKDTIVFCMIGAAN 348
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple
complex, schiff-base linkage, kynuren aminotransferase;
HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A*
3ath_A* 3av7_A* 1x0m_A 1wst_A*
Length = 448
Score = 27.6 bits (62), Expect = 9.7
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 224 DMDSLRNTLERVTADNKRAKKLRRYIVVEAVYQN-SGQIAPLD---ELIRLKEKYRF 276
++ L L+ + + K+ K + Y V +QN +G D L+ L +Y F
Sbjct: 199 KVEILEEKLKELKSQGKKVKVV--YTV--PTFQNPAGVTMNEDRRKYLLELASEYDF 251
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.401
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,570,211
Number of extensions: 481962
Number of successful extensions: 1218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1186
Number of HSP's successfully gapped: 66
Length of query: 483
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 386
Effective length of database: 3,993,456
Effective search space: 1541474016
Effective search space used: 1541474016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)