Query 011568
Match_columns 483
No_of_seqs 388 out of 2891
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 02:49:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011568.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011568hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 9.8E-67 2.1E-71 551.5 38.0 451 10-474 8-496 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 3E-47 6.6E-52 364.8 17.9 276 149-427 3-285 (287)
3 PLN03210 Resistant to P. syrin 100.0 3E-38 6.4E-43 351.8 32.8 305 139-476 183-505 (1153)
4 PRK04841 transcriptional regul 99.7 2.7E-15 5.8E-20 166.4 24.6 289 140-473 14-332 (903)
5 COG2909 MalT ATP-dependent tra 99.6 7.5E-14 1.6E-18 142.5 22.4 291 139-473 18-338 (894)
6 PRK00411 cdc6 cell division co 99.4 2E-10 4.3E-15 115.1 27.4 292 139-453 29-358 (394)
7 TIGR03015 pepcterm_ATPase puta 99.4 1.4E-10 2.9E-15 110.0 24.5 182 160-347 40-242 (269)
8 TIGR02928 orc1/cdc6 family rep 99.4 3.6E-10 7.7E-15 112.1 27.7 294 140-453 15-350 (365)
9 PF01637 Arch_ATPase: Archaeal 99.4 1.8E-12 4E-17 119.9 9.4 192 142-342 1-233 (234)
10 PRK00080 ruvB Holliday junctio 99.3 5.6E-11 1.2E-15 115.5 18.4 272 139-454 24-311 (328)
11 TIGR00635 ruvB Holliday juncti 99.3 2.5E-09 5.4E-14 103.2 24.9 269 141-454 5-290 (305)
12 PF05729 NACHT: NACHT domain 99.2 9.5E-11 2.1E-15 102.2 11.2 142 164-311 1-163 (166)
13 COG3899 Predicted ATPase [Gene 99.2 1.8E-09 3.9E-14 116.5 19.9 306 142-472 2-385 (849)
14 COG2256 MGS1 ATPase related to 99.1 2.3E-08 4.9E-13 94.9 22.7 219 140-388 24-263 (436)
15 PRK06893 DNA replication initi 99.0 2.1E-09 4.5E-14 98.8 11.4 174 140-345 16-205 (229)
16 PTZ00112 origin recognition co 99.0 1.6E-07 3.5E-12 97.8 22.8 293 139-454 754-1087(1164)
17 PRK13342 recombination factor 98.9 9.9E-08 2.2E-12 95.7 20.3 176 140-345 12-198 (413)
18 TIGR03420 DnaA_homol_Hda DnaA 98.9 8.1E-09 1.8E-13 95.1 11.4 165 149-345 24-203 (226)
19 PRK07003 DNA polymerase III su 98.9 9.7E-08 2.1E-12 98.8 19.7 183 140-345 16-223 (830)
20 PRK12323 DNA polymerase III su 98.9 1.8E-07 4E-12 95.5 20.4 192 140-342 16-224 (700)
21 COG1474 CDC6 Cdc6-related prot 98.8 5.3E-07 1.1E-11 88.0 20.5 172 140-314 17-206 (366)
22 PF13401 AAA_22: AAA domain; P 98.8 8.1E-09 1.8E-13 86.2 6.6 117 163-281 4-125 (131)
23 PRK04195 replication factor C 98.8 7.6E-07 1.6E-11 91.2 21.8 242 140-427 14-272 (482)
24 PRK12402 replication factor C 98.8 1.7E-07 3.6E-12 91.9 15.9 196 140-342 15-225 (337)
25 PRK14949 DNA polymerase III su 98.8 1.6E-07 3.4E-12 99.1 15.1 180 140-342 16-219 (944)
26 PRK14961 DNA polymerase III su 98.8 3.7E-07 8.1E-12 89.9 16.9 174 140-340 16-217 (363)
27 PRK14960 DNA polymerase III su 98.7 8.4E-07 1.8E-11 91.0 19.6 179 140-341 15-217 (702)
28 KOG2028 ATPase related to the 98.7 2.6E-07 5.7E-12 86.3 14.4 162 153-338 152-331 (554)
29 PF13173 AAA_14: AAA domain 98.7 3.7E-08 8.1E-13 81.8 7.8 119 163-303 2-127 (128)
30 PRK00440 rfc replication facto 98.7 4.4E-07 9.5E-12 88.2 16.5 178 140-341 17-201 (319)
31 PLN03025 replication factor C 98.7 3.5E-07 7.5E-12 88.6 14.6 179 140-340 13-197 (319)
32 PRK08727 hypothetical protein; 98.7 2.6E-07 5.6E-12 85.1 12.9 168 140-340 19-201 (233)
33 PRK14963 DNA polymerase III su 98.7 6.3E-07 1.4E-11 91.3 16.8 191 140-345 14-220 (504)
34 cd00009 AAA The AAA+ (ATPases 98.7 1.9E-07 4.1E-12 79.3 10.1 122 144-283 2-131 (151)
35 TIGR02903 spore_lon_C ATP-depe 98.7 7.4E-07 1.6E-11 93.3 16.4 200 140-346 154-398 (615)
36 PRK06645 DNA polymerase III su 98.6 8.5E-07 1.8E-11 90.0 16.2 178 140-340 21-226 (507)
37 PRK05564 DNA polymerase III su 98.6 1.4E-06 3E-11 84.2 16.7 174 141-341 5-188 (313)
38 COG3903 Predicted ATPase [Gene 98.6 6.1E-08 1.3E-12 92.6 7.0 286 163-472 14-313 (414)
39 PRK14962 DNA polymerase III su 98.6 9.4E-07 2E-11 89.3 15.8 185 140-347 14-223 (472)
40 PRK14957 DNA polymerase III su 98.6 1.2E-06 2.5E-11 89.6 16.5 183 140-345 16-223 (546)
41 PRK07471 DNA polymerase III su 98.6 1.7E-06 3.6E-11 84.7 16.8 195 140-343 19-238 (365)
42 PRK14956 DNA polymerase III su 98.6 5.8E-07 1.3E-11 89.5 13.2 187 140-339 18-218 (484)
43 PF05496 RuvB_N: Holliday junc 98.6 3E-06 6.6E-11 75.3 15.9 174 140-348 24-226 (233)
44 PRK08084 DNA replication initi 98.6 7.6E-07 1.6E-11 82.1 12.6 164 149-344 31-210 (235)
45 PRK07940 DNA polymerase III su 98.6 1.9E-06 4.1E-11 85.0 16.0 169 141-341 6-211 (394)
46 PF13191 AAA_16: AAA ATPase do 98.6 1.5E-07 3.2E-12 83.7 7.5 46 141-188 1-49 (185)
47 PRK14958 DNA polymerase III su 98.6 1.1E-06 2.4E-11 89.7 14.6 179 140-341 16-218 (509)
48 PRK14951 DNA polymerase III su 98.6 2E-06 4.3E-11 89.1 16.4 193 140-342 16-224 (618)
49 PRK09112 DNA polymerase III su 98.6 2.3E-06 5E-11 83.3 15.9 194 139-343 22-240 (351)
50 PRK08903 DnaA regulatory inact 98.6 9.2E-07 2E-11 81.4 12.5 163 149-347 27-203 (227)
51 PRK14964 DNA polymerase III su 98.6 2.5E-06 5.5E-11 85.9 16.4 178 140-340 13-214 (491)
52 PF14516 AAA_35: AAA-like doma 98.6 2.5E-05 5.4E-10 75.9 22.9 195 142-349 13-245 (331)
53 PRK08691 DNA polymerase III su 98.5 1.2E-06 2.5E-11 90.8 13.9 180 140-342 16-219 (709)
54 PRK13341 recombination factor 98.5 7.8E-07 1.7E-11 94.1 12.9 169 140-338 28-212 (725)
55 TIGR00678 holB DNA polymerase 98.5 2.9E-06 6.4E-11 75.6 14.9 160 153-338 3-186 (188)
56 PRK07994 DNA polymerase III su 98.5 1.8E-06 3.9E-11 89.6 15.2 189 140-342 16-219 (647)
57 cd01128 rho_factor Transcripti 98.5 2E-07 4.3E-12 86.0 7.2 92 162-255 15-114 (249)
58 TIGR02397 dnaX_nterm DNA polym 98.5 4.7E-06 1E-10 82.3 17.1 181 140-344 14-219 (355)
59 PF05621 TniB: Bacterial TniB 98.5 4.5E-06 9.7E-11 77.7 15.3 199 141-340 35-258 (302)
60 PTZ00202 tuzin; Provisional 98.5 2.5E-06 5.4E-11 82.8 13.6 161 137-311 259-434 (550)
61 PRK09087 hypothetical protein; 98.5 3E-06 6.4E-11 77.5 13.1 141 162-343 43-195 (226)
62 PRK05896 DNA polymerase III su 98.5 4.8E-06 1E-10 85.3 15.5 192 140-345 16-223 (605)
63 PRK14969 DNA polymerase III su 98.4 3.3E-06 7.3E-11 86.8 14.5 181 140-343 16-221 (527)
64 PRK07764 DNA polymerase III su 98.4 5.3E-06 1.1E-10 89.0 16.4 183 140-345 15-224 (824)
65 PRK14970 DNA polymerase III su 98.4 6.8E-06 1.5E-10 81.4 15.9 178 140-340 17-206 (367)
66 PRK14955 DNA polymerase III su 98.4 1.6E-06 3.4E-11 86.5 11.3 195 140-340 16-225 (397)
67 PRK14959 DNA polymerase III su 98.4 6E-06 1.3E-10 85.1 15.3 194 140-347 16-225 (624)
68 KOG0989 Replication factor C, 98.4 1.7E-06 3.7E-11 79.4 9.8 190 139-345 35-233 (346)
69 COG2255 RuvB Holliday junction 98.4 3.6E-05 7.7E-10 70.2 17.3 172 140-346 26-226 (332)
70 PF00308 Bac_DnaA: Bacterial d 98.4 5.3E-06 1.1E-10 75.5 12.3 160 163-343 34-208 (219)
71 PRK09376 rho transcription ter 98.4 1.5E-06 3.2E-11 83.8 8.6 91 163-255 169-267 (416)
72 PRK14952 DNA polymerase III su 98.3 1.9E-05 4.1E-10 81.6 17.0 194 140-346 13-223 (584)
73 PRK09111 DNA polymerase III su 98.3 1.3E-05 2.9E-10 83.1 16.0 194 140-343 24-233 (598)
74 PRK14950 DNA polymerase III su 98.3 5E-06 1.1E-10 87.0 12.5 190 140-342 16-220 (585)
75 PRK05642 DNA replication initi 98.3 9.9E-06 2.1E-10 74.6 12.9 150 163-344 45-209 (234)
76 TIGR02639 ClpA ATP-dependent C 98.3 6.4E-06 1.4E-10 88.6 13.2 176 140-334 182-382 (731)
77 PRK08451 DNA polymerase III su 98.3 3.2E-05 6.8E-10 78.8 17.3 181 140-343 14-218 (535)
78 TIGR01242 26Sp45 26S proteasom 98.3 2.8E-06 6.1E-11 83.9 9.6 170 140-337 122-328 (364)
79 PRK07133 DNA polymerase III su 98.3 2.3E-05 5E-10 82.1 16.4 178 140-344 18-221 (725)
80 PRK14953 DNA polymerase III su 98.3 3.8E-05 8.3E-10 78.1 17.5 178 140-344 16-221 (486)
81 PRK14087 dnaA chromosomal repl 98.3 2.2E-05 4.7E-10 79.3 15.6 165 163-344 141-320 (450)
82 PRK14971 DNA polymerase III su 98.3 2.9E-05 6.2E-10 81.3 16.2 177 140-340 17-219 (614)
83 TIGR03345 VI_ClpV1 type VI sec 98.2 1.6E-05 3.5E-10 86.3 14.5 179 140-336 187-389 (852)
84 PRK14954 DNA polymerase III su 98.2 4E-05 8.7E-10 79.8 16.3 197 140-343 16-229 (620)
85 PRK06620 hypothetical protein; 98.2 1.7E-05 3.8E-10 71.8 12.1 133 164-340 45-186 (214)
86 PRK06305 DNA polymerase III su 98.2 3.3E-05 7.1E-10 78.1 15.0 181 140-344 17-224 (451)
87 TIGR00767 rho transcription te 98.2 3.6E-06 7.8E-11 81.6 7.7 92 162-255 167-266 (415)
88 PRK06647 DNA polymerase III su 98.2 6.4E-05 1.4E-09 77.8 17.4 186 140-341 16-218 (563)
89 TIGR00362 DnaA chromosomal rep 98.2 4.3E-05 9.3E-10 76.7 15.6 158 163-341 136-308 (405)
90 CHL00095 clpC Clp protease ATP 98.2 1.5E-05 3.2E-10 87.0 13.0 179 140-335 179-379 (821)
91 PRK07399 DNA polymerase III su 98.2 0.00013 2.7E-09 70.1 17.7 193 141-342 5-220 (314)
92 TIGR02881 spore_V_K stage V sp 98.2 1E-05 2.3E-10 76.0 9.9 132 163-313 42-193 (261)
93 KOG2227 Pre-initiation complex 98.2 9.4E-05 2E-09 72.0 16.3 191 139-336 149-361 (529)
94 PRK14088 dnaA chromosomal repl 98.2 5.7E-05 1.2E-09 76.2 15.6 191 152-363 118-332 (440)
95 PRK03992 proteasome-activating 98.2 1.4E-05 3.1E-10 79.3 10.9 169 140-336 131-336 (389)
96 PRK05563 DNA polymerase III su 98.1 0.00011 2.3E-09 76.4 17.4 188 140-340 16-217 (559)
97 PRK11034 clpA ATP-dependent Cl 98.1 2.2E-05 4.7E-10 83.7 12.4 155 141-311 187-362 (758)
98 PRK11331 5-methylcytosine-spec 98.1 2E-05 4.3E-10 77.9 11.1 107 141-255 176-283 (459)
99 PRK00149 dnaA chromosomal repl 98.1 6.8E-05 1.5E-09 76.3 15.5 180 163-363 148-349 (450)
100 PHA02544 44 clamp loader, smal 98.1 4.2E-05 9.2E-10 74.2 13.3 144 140-309 21-171 (316)
101 PRK14948 DNA polymerase III su 98.1 0.00012 2.6E-09 76.7 16.9 191 140-341 16-220 (620)
102 PRK14086 dnaA chromosomal repl 98.1 0.00011 2.3E-09 75.7 15.9 157 164-341 315-486 (617)
103 PRK14965 DNA polymerase III su 98.1 6.8E-05 1.5E-09 78.2 14.9 192 140-344 16-222 (576)
104 TIGR02880 cbbX_cfxQ probable R 98.1 7E-05 1.5E-09 71.1 13.4 131 165-313 60-210 (284)
105 KOG2543 Origin recognition com 98.1 6.2E-05 1.3E-09 71.4 12.6 196 140-345 6-228 (438)
106 COG3267 ExeA Type II secretory 98.1 0.00019 4.1E-09 64.7 14.9 182 160-346 48-248 (269)
107 TIGR03346 chaperone_ClpB ATP-d 98.0 8.7E-05 1.9E-09 81.2 14.8 154 140-311 173-349 (852)
108 PRK05707 DNA polymerase III su 98.0 0.00015 3.3E-09 70.0 14.5 155 163-343 22-203 (328)
109 smart00382 AAA ATPases associa 98.0 3.3E-05 7.2E-10 64.7 8.9 90 164-258 3-92 (148)
110 PRK12422 chromosomal replicati 98.0 0.00031 6.7E-09 70.8 17.0 152 163-337 141-307 (445)
111 PRK10865 protein disaggregatio 98.0 0.00014 3E-09 79.5 15.0 155 140-311 178-354 (857)
112 CHL00181 cbbX CbbX; Provisiona 98.0 0.00022 4.7E-09 67.7 14.4 132 164-313 60-211 (287)
113 PRK08181 transposase; Validate 97.9 0.00036 7.8E-09 65.3 15.2 79 154-254 99-177 (269)
114 TIGR00602 rad24 checkpoint pro 97.9 5.2E-05 1.1E-09 78.9 9.8 194 140-340 84-320 (637)
115 COG1373 Predicted ATPase (AAA+ 97.9 0.00016 3.4E-09 72.0 12.7 131 149-306 24-162 (398)
116 KOG0741 AAA+-type ATPase [Post 97.8 0.00037 8E-09 68.8 13.7 143 162-333 537-704 (744)
117 TIGR03689 pup_AAA proteasome A 97.8 0.00041 8.8E-09 70.5 14.4 157 141-313 183-380 (512)
118 PF00004 AAA: ATPase family as 97.8 4.2E-05 9.1E-10 63.6 6.1 68 166-255 1-69 (132)
119 PTZ00454 26S protease regulato 97.8 0.00014 3.1E-09 72.0 10.1 149 163-337 179-351 (398)
120 PRK08058 DNA polymerase III su 97.7 0.00085 1.8E-08 65.2 14.8 146 142-310 7-181 (329)
121 COG0593 DnaA ATPase involved i 97.7 0.0014 3E-08 64.3 15.8 153 162-336 112-279 (408)
122 TIGR01241 FtsH_fam ATP-depende 97.7 0.0015 3.3E-08 67.3 17.1 199 140-364 55-296 (495)
123 CHL00176 ftsH cell division pr 97.7 0.001 2.2E-08 69.9 15.6 198 140-363 183-423 (638)
124 PF10443 RNA12: RNA12 protein; 97.7 0.0023 5.1E-08 62.6 16.7 275 149-455 3-371 (431)
125 PRK08769 DNA polymerase III su 97.7 0.0021 4.6E-08 61.6 16.0 172 149-343 11-208 (319)
126 PRK08116 hypothetical protein; 97.7 7.6E-05 1.6E-09 70.1 6.1 101 164-281 115-220 (268)
127 PRK08118 topology modulation p 97.7 3E-05 6.4E-10 67.4 3.1 36 164-199 2-37 (167)
128 TIGR02640 gas_vesic_GvpN gas v 97.7 0.0013 2.8E-08 61.8 14.3 56 149-212 9-64 (262)
129 PRK12608 transcription termina 97.7 0.00041 8.9E-09 67.1 10.8 102 151-254 120-230 (380)
130 PRK10536 hypothetical protein; 97.6 0.00034 7.4E-09 64.1 9.5 41 142-186 57-97 (262)
131 PF04665 Pox_A32: Poxvirus A32 97.6 0.00012 2.5E-09 66.7 6.4 36 164-202 14-49 (241)
132 PTZ00361 26 proteosome regulat 97.6 0.00038 8.2E-09 69.6 10.7 148 163-336 217-388 (438)
133 COG0466 Lon ATP-dependent Lon 97.6 0.0011 2.4E-08 68.2 13.9 45 141-187 324-374 (782)
134 TIGR02237 recomb_radB DNA repa 97.6 0.00022 4.8E-09 64.6 8.2 87 163-254 12-107 (209)
135 PRK09183 transposase/IS protei 97.6 0.0012 2.7E-08 61.7 12.9 24 163-186 102-125 (259)
136 PRK07261 topology modulation p 97.6 0.00025 5.4E-09 61.9 7.8 66 165-254 2-67 (171)
137 PRK06871 DNA polymerase III su 97.6 0.0041 8.8E-08 59.8 16.4 175 150-340 10-200 (325)
138 PRK06526 transposase; Provisio 97.6 0.0016 3.5E-08 60.5 13.1 25 163-187 98-122 (254)
139 KOG1514 Origin recognition com 97.6 0.0034 7.4E-08 64.4 16.2 198 141-346 397-624 (767)
140 KOG0735 AAA+-type ATPase [Post 97.5 0.00048 1E-08 70.4 9.7 156 163-341 431-614 (952)
141 PHA00729 NTP-binding motif con 97.5 0.00053 1.1E-08 61.8 9.1 35 153-187 7-41 (226)
142 TIGR00763 lon ATP-dependent pr 97.5 0.015 3.2E-07 63.4 21.5 45 141-187 321-371 (775)
143 PRK07993 DNA polymerase III su 97.5 0.0042 9.2E-08 60.2 15.6 164 150-340 10-201 (334)
144 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.0005 1.1E-08 63.6 8.6 91 163-255 19-126 (235)
145 KOG0991 Replication factor C, 97.5 0.0035 7.6E-08 55.7 13.1 46 140-187 27-72 (333)
146 COG1222 RPT1 ATP-dependent 26S 97.5 0.0026 5.7E-08 60.2 13.1 177 162-364 184-393 (406)
147 TIGR02639 ClpA ATP-dependent C 97.5 0.0046 1E-07 66.9 17.0 101 141-255 455-564 (731)
148 KOG2004 Mitochondrial ATP-depe 97.5 0.00099 2.1E-08 68.3 10.8 152 142-311 413-596 (906)
149 PF00448 SRP54: SRP54-type pro 97.4 0.00098 2.1E-08 59.4 9.8 88 163-253 1-92 (196)
150 PRK10787 DNA-binding ATP-depen 97.4 0.0029 6.2E-08 68.4 15.0 44 141-186 323-372 (784)
151 PF05673 DUF815: Protein of un 97.4 0.00083 1.8E-08 60.9 9.2 48 138-187 25-76 (249)
152 KOG0743 AAA+-type ATPase [Post 97.4 0.034 7.3E-07 54.6 20.7 150 164-349 236-416 (457)
153 cd01393 recA_like RecA is a b 97.4 0.00094 2E-08 61.3 9.9 89 163-255 19-125 (226)
154 PRK06090 DNA polymerase III su 97.4 0.025 5.5E-07 54.3 19.6 181 150-364 11-218 (319)
155 TIGR03346 chaperone_ClpB ATP-d 97.4 0.0047 1E-07 67.9 16.4 104 141-255 566-678 (852)
156 COG2812 DnaX DNA polymerase II 97.4 0.00054 1.2E-08 69.2 7.9 186 140-338 16-215 (515)
157 COG0542 clpA ATP-binding subun 97.4 0.0068 1.5E-07 64.1 16.0 102 141-255 492-604 (786)
158 COG1223 Predicted ATPase (AAA+ 97.3 0.002 4.3E-08 58.2 10.3 171 140-336 121-318 (368)
159 PRK12377 putative replication 97.3 0.00029 6.4E-09 65.0 5.2 73 163-254 101-173 (248)
160 KOG2228 Origin recognition com 97.3 0.0021 4.5E-08 60.4 10.5 166 141-311 25-219 (408)
161 PRK09361 radB DNA repair and r 97.3 0.00081 1.7E-08 61.7 7.9 86 163-254 23-117 (225)
162 CHL00195 ycf46 Ycf46; Provisio 97.3 0.001 2.2E-08 67.7 9.2 150 163-336 259-428 (489)
163 TIGR01243 CDC48 AAA family ATP 97.3 0.0022 4.8E-08 69.5 12.3 149 163-337 487-657 (733)
164 TIGR02012 tigrfam_recA protein 97.3 0.00074 1.6E-08 64.5 7.4 85 162-254 54-143 (321)
165 cd01120 RecA-like_NTPases RecA 97.3 0.0019 4E-08 55.6 9.5 40 165-207 1-40 (165)
166 TIGR02902 spore_lonB ATP-depen 97.3 0.0011 2.5E-08 68.5 9.4 44 141-186 66-109 (531)
167 PF13207 AAA_17: AAA domain; P 97.3 0.00023 5E-09 58.2 3.4 23 165-187 1-23 (121)
168 KOG0731 AAA+-type ATPase conta 97.3 0.003 6.6E-08 66.2 12.3 174 141-339 312-520 (774)
169 TIGR01243 CDC48 AAA family ATP 97.3 0.0022 4.7E-08 69.5 11.6 169 141-337 179-381 (733)
170 PF01695 IstB_IS21: IstB-like 97.2 0.00014 3E-09 63.9 1.8 72 163-254 47-118 (178)
171 PRK09354 recA recombinase A; P 97.2 0.001 2.2E-08 64.2 7.7 85 162-254 59-148 (349)
172 cd01394 radB RadB. The archaea 97.2 0.0013 2.8E-08 60.0 8.1 42 163-207 19-60 (218)
173 cd00983 recA RecA is a bacter 97.2 0.0011 2.3E-08 63.5 7.7 84 163-254 55-143 (325)
174 PRK04132 replication factor C 97.2 0.0063 1.4E-07 65.5 14.2 152 169-341 570-729 (846)
175 CHL00095 clpC Clp protease ATP 97.2 0.007 1.5E-07 66.3 15.0 46 140-187 509-563 (821)
176 PRK06964 DNA polymerase III su 97.2 0.017 3.7E-07 56.0 16.0 89 244-343 132-225 (342)
177 PF13177 DNA_pol3_delta2: DNA 97.2 0.0026 5.6E-08 55.0 9.4 133 149-299 4-162 (162)
178 TIGR03345 VI_ClpV1 type VI sec 97.1 0.00088 1.9E-08 73.1 7.1 45 141-187 567-620 (852)
179 PRK04296 thymidine kinase; Pro 97.1 0.00036 7.9E-09 62.0 3.5 111 164-283 3-117 (190)
180 TIGR02238 recomb_DMC1 meiotic 97.1 0.0021 4.4E-08 61.7 8.7 90 163-254 96-201 (313)
181 PRK05541 adenylylsulfate kinas 97.1 0.00094 2E-08 58.7 5.9 37 162-201 6-42 (176)
182 COG0470 HolB ATPase involved i 97.1 0.0032 7E-08 61.2 10.1 137 142-297 3-167 (325)
183 PRK10865 protein disaggregatio 97.1 0.0017 3.7E-08 71.1 8.7 45 141-187 569-622 (857)
184 PF08423 Rad51: Rad51; InterP 97.1 0.0053 1.1E-07 57.3 10.7 90 163-254 38-143 (256)
185 COG0542 clpA ATP-binding subun 97.1 0.0046 1E-07 65.3 11.2 154 140-311 170-346 (786)
186 PRK08699 DNA polymerase III su 97.0 0.0061 1.3E-07 58.9 11.2 25 163-187 21-45 (325)
187 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0055 1.2E-07 56.6 10.6 88 162-255 20-137 (237)
188 PF07693 KAP_NTPase: KAP famil 97.0 0.018 3.9E-07 56.0 14.6 70 151-220 5-81 (325)
189 PLN00020 ribulose bisphosphate 97.0 0.0026 5.6E-08 61.1 8.2 26 161-186 146-171 (413)
190 smart00763 AAA_PrkA PrkA AAA d 97.0 0.001 2.3E-08 64.1 5.4 47 141-189 52-104 (361)
191 PLN03187 meiotic recombination 97.0 0.0035 7.5E-08 60.7 9.0 90 163-254 126-231 (344)
192 COG1484 DnaC DNA replication p 97.0 0.0029 6.3E-08 58.9 8.2 82 152-254 96-177 (254)
193 KOG0744 AAA+-type ATPase [Post 97.0 0.0033 7.1E-08 58.7 8.1 83 163-255 177-261 (423)
194 PRK07952 DNA replication prote 97.0 0.0029 6.3E-08 58.3 7.8 87 151-255 85-173 (244)
195 TIGR03499 FlhF flagellar biosy 97.0 0.0049 1.1E-07 58.5 9.6 87 163-253 194-281 (282)
196 KOG0739 AAA+-type ATPase [Post 97.0 0.0072 1.6E-07 55.8 10.0 149 163-337 166-335 (439)
197 KOG0730 AAA+-type ATPase [Post 97.0 0.0059 1.3E-07 62.3 10.4 150 161-336 466-636 (693)
198 PRK06921 hypothetical protein; 96.9 0.0042 9.1E-08 58.3 8.9 39 162-202 116-154 (266)
199 PRK11034 clpA ATP-dependent Cl 96.9 0.0018 4E-08 69.3 7.1 45 141-187 459-512 (758)
200 KOG0733 Nuclear AAA ATPase (VC 96.9 0.0099 2.1E-07 60.2 11.6 148 163-336 223-395 (802)
201 PF14532 Sigma54_activ_2: Sigm 96.9 0.0005 1.1E-08 57.7 2.3 42 143-186 1-44 (138)
202 PRK14722 flhF flagellar biosyn 96.9 0.0039 8.5E-08 60.9 8.7 88 163-254 137-225 (374)
203 PRK06835 DNA replication prote 96.9 0.00098 2.1E-08 64.3 4.4 36 164-202 184-219 (329)
204 COG2884 FtsE Predicted ATPase 96.9 0.0073 1.6E-07 52.2 9.0 66 229-295 141-210 (223)
205 KOG0734 AAA+-type ATPase conta 96.9 0.0038 8.3E-08 62.0 8.3 92 142-255 306-407 (752)
206 PLN03186 DNA repair protein RA 96.9 0.0039 8.5E-08 60.4 8.4 90 163-254 123-228 (342)
207 TIGR02236 recomb_radA DNA repa 96.9 0.0067 1.4E-07 58.6 10.0 56 163-220 95-154 (310)
208 PRK04301 radA DNA repair and r 96.9 0.0065 1.4E-07 58.8 9.9 90 163-254 102-208 (317)
209 KOG1969 DNA replication checkp 96.9 0.0031 6.6E-08 65.0 7.7 72 163-255 326-398 (877)
210 TIGR02239 recomb_RAD51 DNA rep 96.8 0.0041 8.8E-08 59.9 8.0 91 162-254 95-201 (316)
211 PRK00771 signal recognition pa 96.8 0.0088 1.9E-07 60.0 10.4 87 162-253 94-184 (437)
212 COG0468 RecA RecA/RadA recombi 96.8 0.0091 2E-07 55.9 9.8 88 163-254 60-151 (279)
213 cd03214 ABC_Iron-Siderophores_ 96.8 0.0069 1.5E-07 53.4 8.8 122 162-288 24-164 (180)
214 PRK11608 pspF phage shock prot 96.8 0.02 4.2E-07 55.7 12.6 44 141-186 7-52 (326)
215 PRK15429 formate hydrogenlyase 96.8 0.023 5E-07 61.2 14.3 44 141-186 377-422 (686)
216 PRK12726 flagellar biosynthesi 96.8 0.0064 1.4E-07 59.1 8.9 90 162-254 205-295 (407)
217 cd03115 SRP The signal recogni 96.8 0.0062 1.3E-07 53.2 8.2 86 165-254 2-92 (173)
218 TIGR02974 phageshock_pspF psp 96.8 0.021 4.5E-07 55.5 12.4 42 143-186 2-45 (329)
219 PRK11889 flhF flagellar biosyn 96.8 0.006 1.3E-07 59.5 8.4 89 163-254 241-330 (436)
220 TIGR01817 nifA Nif-specific re 96.8 0.022 4.7E-07 59.5 13.4 46 139-186 195-242 (534)
221 PRK04328 hypothetical protein; 96.8 0.0049 1.1E-07 57.4 7.7 87 162-254 22-138 (249)
222 COG1121 ZnuC ABC-type Mn/Zn tr 96.8 0.0048 1E-07 56.6 7.3 122 163-287 30-204 (254)
223 cd01131 PilT Pilus retraction 96.7 0.0017 3.7E-08 58.1 4.4 109 164-284 2-111 (198)
224 PRK08939 primosomal protein Dn 96.7 0.0039 8.5E-08 59.6 7.1 73 162-254 155-227 (306)
225 PRK06067 flagellar accessory p 96.7 0.0073 1.6E-07 55.7 8.6 87 162-254 24-130 (234)
226 TIGR03878 thermo_KaiC_2 KaiC d 96.7 0.006 1.3E-07 57.1 8.1 40 163-205 36-75 (259)
227 PTZ00035 Rad51 protein; Provis 96.7 0.01 2.2E-07 57.7 9.9 92 162-255 117-224 (337)
228 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.0051 1.1E-07 52.0 6.7 104 163-287 26-132 (144)
229 PRK12723 flagellar biosynthesi 96.7 0.0077 1.7E-07 59.4 8.8 89 163-254 174-264 (388)
230 PRK06547 hypothetical protein; 96.7 0.0027 5.9E-08 55.3 5.1 33 154-186 6-38 (172)
231 PRK06696 uridine kinase; Valid 96.7 0.0026 5.7E-08 58.2 5.2 39 149-187 5-46 (223)
232 COG0464 SpoVK ATPases of the A 96.7 0.02 4.3E-07 59.2 12.3 150 162-335 275-445 (494)
233 cd03247 ABCC_cytochrome_bd The 96.7 0.007 1.5E-07 53.2 7.7 116 163-286 28-161 (178)
234 KOG2035 Replication factor C, 96.7 0.18 3.9E-06 46.4 16.5 228 142-388 15-282 (351)
235 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.0029 6.2E-08 55.9 5.3 22 165-186 1-22 (183)
236 cd03223 ABCD_peroxisomal_ALDP 96.7 0.0095 2.1E-07 51.7 8.3 115 163-285 27-151 (166)
237 COG0541 Ffh Signal recognition 96.7 0.15 3.3E-06 50.1 17.0 88 162-252 99-190 (451)
238 cd01133 F1-ATPase_beta F1 ATP 96.6 0.012 2.7E-07 54.8 9.3 89 163-254 69-173 (274)
239 PF13481 AAA_25: AAA domain; P 96.6 0.015 3.3E-07 51.8 9.7 88 164-254 33-151 (193)
240 PRK15455 PrkA family serine pr 96.6 0.0024 5.2E-08 65.0 4.9 46 141-188 77-128 (644)
241 cd03222 ABC_RNaseL_inhibitor T 96.6 0.009 1.9E-07 52.3 7.9 111 162-295 24-145 (177)
242 COG2607 Predicted ATPase (AAA+ 96.6 0.019 4E-07 51.6 9.7 46 140-187 60-109 (287)
243 COG0467 RAD55 RecA-superfamily 96.6 0.013 2.8E-07 55.0 9.5 87 162-254 22-134 (260)
244 PF13238 AAA_18: AAA domain; P 96.6 0.0017 3.7E-08 53.5 3.2 21 166-186 1-21 (129)
245 PF03215 Rad17: Rad17 cell cyc 96.6 0.014 3E-07 59.9 10.3 48 149-201 26-78 (519)
246 PRK08533 flagellar accessory p 96.6 0.011 2.4E-07 54.2 8.7 48 163-215 24-71 (230)
247 cd01124 KaiC KaiC is a circadi 96.6 0.0048 1E-07 54.6 6.2 45 165-214 1-45 (187)
248 cd03228 ABCC_MRP_Like The MRP 96.6 0.0083 1.8E-07 52.4 7.5 25 162-186 27-51 (171)
249 COG0563 Adk Adenylate kinase a 96.6 0.0041 8.9E-08 54.4 5.5 23 165-187 2-24 (178)
250 COG4608 AppF ABC-type oligopep 96.6 0.014 3E-07 53.6 9.0 124 162-291 38-179 (268)
251 PF10236 DAP3: Mitochondrial r 96.6 0.15 3.3E-06 49.0 16.6 49 292-340 258-306 (309)
252 COG1066 Sms Predicted ATP-depe 96.6 0.0072 1.6E-07 58.5 7.3 87 162-255 92-179 (456)
253 KOG0728 26S proteasome regulat 96.5 0.031 6.8E-07 50.3 10.7 130 161-312 179-332 (404)
254 TIGR00959 ffh signal recogniti 96.5 0.017 3.6E-07 57.8 10.0 25 163-187 99-123 (428)
255 COG1102 Cmk Cytidylate kinase 96.5 0.0085 1.8E-07 50.3 6.6 44 165-222 2-45 (179)
256 KOG0733 Nuclear AAA ATPase (VC 96.5 0.011 2.5E-07 59.7 8.7 129 163-313 545-694 (802)
257 cd01121 Sms Sms (bacterial rad 96.5 0.0081 1.8E-07 59.1 7.7 87 163-255 82-169 (372)
258 PF13671 AAA_33: AAA domain; P 96.5 0.0024 5.1E-08 53.8 3.4 22 165-186 1-22 (143)
259 cd02019 NK Nucleoside/nucleoti 96.5 0.0024 5.2E-08 46.3 3.0 23 165-187 1-23 (69)
260 cd03238 ABC_UvrA The excision 96.5 0.0099 2.2E-07 52.0 7.4 114 162-286 20-153 (176)
261 PRK10733 hflB ATP-dependent me 96.5 0.011 2.3E-07 62.9 9.0 147 164-336 186-356 (644)
262 PF00485 PRK: Phosphoribulokin 96.5 0.0022 4.8E-08 57.3 3.3 23 165-187 1-23 (194)
263 PF07728 AAA_5: AAA domain (dy 96.5 0.0071 1.5E-07 50.7 6.3 42 166-213 2-43 (139)
264 COG1618 Predicted nucleotide k 96.5 0.0035 7.6E-08 52.5 4.1 24 164-187 6-29 (179)
265 PRK09270 nucleoside triphospha 96.5 0.026 5.6E-07 51.9 10.3 27 161-187 31-57 (229)
266 PRK12727 flagellar biosynthesi 96.5 0.013 2.8E-07 59.5 8.8 88 163-254 350-438 (559)
267 TIGR00064 ftsY signal recognit 96.5 0.022 4.7E-07 53.7 9.9 89 162-254 71-164 (272)
268 PF06745 KaiC: KaiC; InterPro 96.4 0.0025 5.3E-08 58.5 3.4 88 162-254 18-125 (226)
269 TIGR02655 circ_KaiC circadian 96.4 0.011 2.5E-07 60.6 8.6 87 162-254 262-363 (484)
270 PTZ00088 adenylate kinase 1; P 96.4 0.0026 5.6E-08 58.2 3.5 22 165-186 8-29 (229)
271 PRK10867 signal recognition pa 96.4 0.017 3.7E-07 57.8 9.5 26 162-187 99-124 (433)
272 PRK05480 uridine/cytidine kina 96.4 0.0031 6.7E-08 57.1 4.0 27 161-187 4-30 (209)
273 PF00154 RecA: recA bacterial 96.4 0.0063 1.4E-07 58.1 6.0 85 163-255 53-142 (322)
274 cd02025 PanK Pantothenate kina 96.4 0.017 3.7E-07 52.6 8.7 23 165-187 1-23 (220)
275 PRK14974 cell division protein 96.4 0.02 4.4E-07 55.3 9.6 90 162-254 139-232 (336)
276 COG1136 SalX ABC-type antimicr 96.4 0.016 3.6E-07 52.2 8.3 59 229-289 146-210 (226)
277 PRK08233 hypothetical protein; 96.4 0.003 6.5E-08 55.7 3.6 25 163-187 3-27 (182)
278 PRK05022 anaerobic nitric oxid 96.4 0.07 1.5E-06 55.3 14.0 62 139-205 186-249 (509)
279 PTZ00301 uridine kinase; Provi 96.4 0.0032 7E-08 56.7 3.6 25 163-187 3-27 (210)
280 COG1419 FlhF Flagellar GTP-bin 96.4 0.034 7.3E-07 54.2 10.7 101 150-254 186-291 (407)
281 PRK09519 recA DNA recombinatio 96.4 0.012 2.7E-07 62.6 8.4 84 163-254 60-148 (790)
282 COG1120 FepC ABC-type cobalami 96.3 0.014 3.1E-07 53.7 7.8 130 162-293 27-210 (258)
283 cd03216 ABC_Carb_Monos_I This 96.3 0.007 1.5E-07 52.4 5.5 117 163-288 26-148 (163)
284 PRK14721 flhF flagellar biosyn 96.3 0.027 5.9E-07 56.0 10.2 87 163-253 191-278 (420)
285 cd03230 ABC_DR_subfamily_A Thi 96.3 0.012 2.7E-07 51.4 7.0 119 163-289 26-162 (173)
286 PRK07667 uridine kinase; Provi 96.3 0.0052 1.1E-07 54.8 4.7 36 152-187 4-41 (193)
287 TIGR02858 spore_III_AA stage I 96.3 0.01 2.2E-07 55.6 6.7 118 160-285 108-232 (270)
288 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.0097 2.1E-07 50.8 6.0 116 164-283 3-139 (159)
289 PRK06762 hypothetical protein; 96.3 0.0038 8.1E-08 54.2 3.6 23 164-186 3-25 (166)
290 PRK14527 adenylate kinase; Pro 96.3 0.0066 1.4E-07 54.0 5.2 25 162-186 5-29 (191)
291 cd02027 APSK Adenosine 5'-phos 96.3 0.019 4.2E-07 48.8 7.7 23 165-187 1-23 (149)
292 TIGR01360 aden_kin_iso1 adenyl 96.3 0.0038 8.3E-08 55.3 3.5 25 162-186 2-26 (188)
293 TIGR01425 SRP54_euk signal rec 96.3 0.021 4.5E-07 56.9 8.9 26 162-187 99-124 (429)
294 PF08433 KTI12: Chromatin asso 96.3 0.0039 8.4E-08 58.5 3.6 26 164-189 2-27 (270)
295 PF13245 AAA_19: Part of AAA d 96.3 0.011 2.4E-07 43.7 5.3 25 162-186 9-33 (76)
296 PF00910 RNA_helicase: RNA hel 96.2 0.0033 7.2E-08 50.1 2.6 22 166-187 1-22 (107)
297 TIGR00235 udk uridine kinase. 96.2 0.0043 9.3E-08 56.1 3.7 26 162-187 5-30 (207)
298 PRK06217 hypothetical protein; 96.2 0.0083 1.8E-07 53.0 5.4 23 165-187 3-25 (183)
299 PRK12724 flagellar biosynthesi 96.2 0.014 3E-07 57.7 7.2 85 163-253 223-308 (432)
300 PF03205 MobB: Molybdopterin g 96.2 0.0072 1.6E-07 50.7 4.4 39 164-204 1-39 (140)
301 KOG0727 26S proteasome regulat 96.2 0.03 6.4E-07 50.5 8.4 74 160-255 186-259 (408)
302 cd03237 ABC_RNaseL_inhibitor_d 96.1 0.024 5.2E-07 52.6 8.3 130 163-293 25-187 (246)
303 COG1875 NYN ribonuclease and A 96.1 0.015 3.3E-07 55.3 6.8 35 150-184 232-266 (436)
304 PF01583 APS_kinase: Adenylyls 96.1 0.0062 1.3E-07 51.7 3.8 36 163-201 2-37 (156)
305 cd00544 CobU Adenosylcobinamid 96.1 0.024 5.2E-07 49.2 7.6 82 165-254 1-83 (169)
306 PRK14723 flhF flagellar biosyn 96.1 0.045 9.8E-07 58.3 11.0 60 163-223 185-245 (767)
307 TIGR03881 KaiC_arch_4 KaiC dom 96.1 0.041 9E-07 50.5 9.7 40 162-204 19-58 (229)
308 PRK13765 ATP-dependent proteas 96.1 0.011 2.5E-07 62.0 6.5 75 140-221 31-105 (637)
309 PRK03839 putative kinase; Prov 96.1 0.005 1.1E-07 54.2 3.4 22 165-186 2-23 (180)
310 PF12775 AAA_7: P-loop contain 96.1 0.0052 1.1E-07 57.9 3.5 34 152-186 23-56 (272)
311 PRK12678 transcription termina 96.1 0.0087 1.9E-07 60.8 5.2 90 163-254 416-513 (672)
312 PRK13531 regulatory ATPase Rav 96.1 0.0095 2E-07 59.8 5.4 42 141-186 21-62 (498)
313 PRK05973 replicative DNA helic 96.1 0.034 7.3E-07 50.9 8.6 48 163-215 64-111 (237)
314 PRK08972 fliI flagellum-specif 96.1 0.026 5.6E-07 56.2 8.4 89 162-255 161-263 (444)
315 KOG0736 Peroxisome assembly fa 96.0 0.024 5.1E-07 59.1 8.2 90 142-255 674-775 (953)
316 PF06309 Torsin: Torsin; Inte 96.0 0.059 1.3E-06 43.7 8.9 47 141-187 26-77 (127)
317 COG0572 Udk Uridine kinase [Nu 96.0 0.0091 2E-07 53.3 4.6 26 162-187 7-32 (218)
318 PF00006 ATP-synt_ab: ATP synt 96.0 0.019 4.2E-07 51.8 6.8 87 163-254 15-115 (215)
319 cd03246 ABCC_Protease_Secretio 96.0 0.021 4.6E-07 49.9 6.9 24 163-186 28-51 (173)
320 TIGR00554 panK_bact pantothena 96.0 0.041 9E-07 52.0 9.1 26 161-186 60-85 (290)
321 PF07726 AAA_3: ATPase family 96.0 0.0042 9.1E-08 50.4 2.1 27 166-195 2-28 (131)
322 cd00984 DnaB_C DnaB helicase C 96.0 0.051 1.1E-06 50.3 9.7 50 163-216 13-62 (242)
323 cd01135 V_A-ATPase_B V/A-type 96.0 0.028 6E-07 52.4 7.7 93 162-255 68-177 (276)
324 cd01122 GP4d_helicase GP4d_hel 96.0 0.052 1.1E-06 51.2 9.9 52 163-218 30-81 (271)
325 PRK04040 adenylate kinase; Pro 96.0 0.0066 1.4E-07 53.8 3.5 24 164-187 3-26 (188)
326 PF00625 Guanylate_kin: Guanyl 96.0 0.011 2.4E-07 52.2 4.9 37 163-202 2-38 (183)
327 cd02023 UMPK Uridine monophosp 95.9 0.0054 1.2E-07 55.0 2.9 23 165-187 1-23 (198)
328 PRK07132 DNA polymerase III su 95.9 0.31 6.8E-06 46.4 14.8 166 151-342 5-184 (299)
329 PRK08149 ATP synthase SpaL; Va 95.9 0.028 6E-07 56.0 7.8 89 162-255 150-252 (428)
330 PRK00131 aroK shikimate kinase 95.9 0.0079 1.7E-07 52.5 3.6 24 163-186 4-27 (175)
331 PRK06995 flhF flagellar biosyn 95.9 0.041 8.9E-07 55.7 9.0 88 163-254 256-344 (484)
332 TIGR03575 selen_PSTK_euk L-ser 95.9 0.039 8.4E-07 53.4 8.5 22 166-187 2-23 (340)
333 PRK05703 flhF flagellar biosyn 95.9 0.03 6.5E-07 56.3 8.0 87 163-253 221-308 (424)
334 PRK09544 znuC high-affinity zi 95.9 0.037 8E-07 51.6 8.2 25 162-186 29-53 (251)
335 cd00227 CPT Chloramphenicol (C 95.9 0.0075 1.6E-07 52.9 3.4 23 164-186 3-25 (175)
336 PRK11823 DNA repair protein Ra 95.8 0.024 5.1E-07 57.5 7.3 82 163-254 80-166 (446)
337 TIGR01420 pilT_fam pilus retra 95.8 0.015 3.2E-07 56.9 5.7 109 162-281 121-229 (343)
338 PF13479 AAA_24: AAA domain 95.8 0.031 6.7E-07 50.7 7.5 31 164-205 4-34 (213)
339 TIGR02322 phosphon_PhnN phosph 95.8 0.0075 1.6E-07 53.1 3.3 23 164-186 2-24 (179)
340 COG1703 ArgK Putative periplas 95.8 0.017 3.7E-07 53.6 5.6 63 152-215 38-102 (323)
341 PRK00625 shikimate kinase; Pro 95.8 0.0076 1.6E-07 52.5 3.2 22 165-186 2-23 (173)
342 COG3854 SpoIIIAA ncharacterize 95.8 0.023 5.1E-07 50.6 6.1 127 154-286 128-257 (308)
343 cd02024 NRK1 Nicotinamide ribo 95.8 0.007 1.5E-07 53.4 2.9 22 165-186 1-22 (187)
344 cd02021 GntK Gluconate kinase 95.8 0.007 1.5E-07 51.5 2.9 22 165-186 1-22 (150)
345 KOG0729 26S proteasome regulat 95.8 0.0082 1.8E-07 54.4 3.3 72 161-254 209-280 (435)
346 cd01132 F1_ATPase_alpha F1 ATP 95.8 0.045 9.7E-07 51.0 8.3 88 163-255 69-172 (274)
347 TIGR00390 hslU ATP-dependent p 95.8 0.021 4.5E-07 56.2 6.3 24 163-186 47-70 (441)
348 COG1428 Deoxynucleoside kinase 95.8 0.008 1.7E-07 53.0 3.1 25 163-187 4-28 (216)
349 PRK08927 fliI flagellum-specif 95.8 0.064 1.4E-06 53.6 9.8 88 162-254 157-258 (442)
350 PRK00889 adenylylsulfate kinas 95.8 0.011 2.3E-07 51.9 3.9 26 162-187 3-28 (175)
351 TIGR00416 sms DNA repair prote 95.7 0.038 8.2E-07 56.1 8.3 84 162-255 93-181 (454)
352 cd02020 CMPK Cytidine monophos 95.7 0.0078 1.7E-07 50.8 3.0 22 165-186 1-22 (147)
353 TIGR03263 guanyl_kin guanylate 95.7 0.0084 1.8E-07 52.8 3.2 23 164-186 2-24 (180)
354 PF03308 ArgK: ArgK protein; 95.7 0.021 4.5E-07 52.3 5.6 61 151-212 15-77 (266)
355 PRK14529 adenylate kinase; Pro 95.7 0.041 8.9E-07 50.0 7.5 82 166-254 3-86 (223)
356 cd00071 GMPK Guanosine monopho 95.7 0.0099 2.1E-07 49.7 3.3 22 165-186 1-22 (137)
357 TIGR00708 cobA cob(I)alamin ad 95.7 0.05 1.1E-06 47.0 7.6 118 163-283 5-141 (173)
358 KOG1970 Checkpoint RAD17-RFC c 95.7 0.037 8.1E-07 55.5 7.6 38 149-186 89-133 (634)
359 KOG0651 26S proteasome regulat 95.7 0.023 5E-07 52.9 5.8 70 163-254 166-235 (388)
360 TIGR00150 HI0065_YjeE ATPase, 95.7 0.019 4.1E-07 47.4 4.8 25 163-187 22-46 (133)
361 PF02562 PhoH: PhoH-like prote 95.7 0.016 3.5E-07 51.6 4.7 49 150-201 8-56 (205)
362 COG1124 DppF ABC-type dipeptid 95.7 0.015 3.3E-07 52.4 4.4 25 162-186 32-56 (252)
363 PF03266 NTPase_1: NTPase; In 95.6 0.0097 2.1E-07 51.6 3.2 22 166-187 2-23 (168)
364 cd02028 UMPK_like Uridine mono 95.6 0.0088 1.9E-07 52.6 2.9 23 165-187 1-23 (179)
365 PRK10820 DNA-binding transcrip 95.6 0.031 6.8E-07 57.9 7.4 44 141-186 205-250 (520)
366 KOG0927 Predicted transporter 95.6 0.03 6.5E-07 56.1 6.7 32 163-194 101-132 (614)
367 KOG0924 mRNA splicing factor A 95.6 0.033 7.1E-07 57.1 7.1 122 151-281 361-509 (1042)
368 COG1936 Predicted nucleotide k 95.6 0.0093 2E-07 50.8 2.8 20 165-184 2-21 (180)
369 PRK11388 DNA-binding transcrip 95.6 0.098 2.1E-06 56.0 11.3 44 141-186 326-371 (638)
370 PRK00279 adk adenylate kinase; 95.6 0.022 4.7E-07 51.8 5.5 22 165-186 2-23 (215)
371 COG0529 CysC Adenylylsulfate k 95.6 0.022 4.7E-07 48.7 4.9 30 158-187 18-47 (197)
372 PF03193 DUF258: Protein of un 95.6 0.019 4.1E-07 49.0 4.7 35 149-186 24-58 (161)
373 PF08477 Miro: Miro-like prote 95.6 0.011 2.3E-07 48.0 3.1 21 166-186 2-22 (119)
374 TIGR00073 hypB hydrogenase acc 95.6 0.013 2.9E-07 52.9 4.0 31 156-186 15-45 (207)
375 PRK00300 gmk guanylate kinase; 95.6 0.012 2.7E-07 52.9 3.8 25 162-186 4-28 (205)
376 PRK06002 fliI flagellum-specif 95.6 0.054 1.2E-06 54.2 8.5 88 163-254 165-264 (450)
377 cd01134 V_A-ATPase_A V/A-type 95.6 0.12 2.6E-06 49.8 10.4 49 163-216 157-206 (369)
378 PRK06936 type III secretion sy 95.6 0.069 1.5E-06 53.3 9.2 89 162-255 161-263 (439)
379 KOG1532 GTPase XAB1, interacts 95.6 0.014 3.1E-07 53.2 4.0 60 162-224 18-88 (366)
380 PRK10751 molybdopterin-guanine 95.6 0.012 2.7E-07 50.9 3.5 26 162-187 5-30 (173)
381 PF03969 AFG1_ATPase: AFG1-lik 95.6 0.011 2.4E-07 57.9 3.5 74 162-254 61-137 (362)
382 COG0396 sufC Cysteine desulfur 95.6 0.081 1.7E-06 47.4 8.5 59 229-290 148-212 (251)
383 TIGR03498 FliI_clade3 flagella 95.5 0.061 1.3E-06 53.6 8.7 90 162-255 139-241 (418)
384 cd03281 ABC_MSH5_euk MutS5 hom 95.5 0.015 3.2E-07 52.7 4.1 23 163-185 29-51 (213)
385 PRK10463 hydrogenase nickel in 95.5 0.032 6.9E-07 52.5 6.4 34 153-186 94-127 (290)
386 TIGR03600 phage_DnaB phage rep 95.5 3.1 6.8E-05 42.0 21.7 65 150-220 183-247 (421)
387 TIGR00764 lon_rel lon-related 95.5 0.044 9.5E-07 57.7 8.1 75 140-221 18-92 (608)
388 PRK07594 type III secretion sy 95.5 0.071 1.5E-06 53.2 9.0 89 162-255 154-256 (433)
389 KOG0737 AAA+-type ATPase [Post 95.5 0.044 9.6E-07 52.3 7.2 25 162-186 126-150 (386)
390 PRK09302 circadian clock prote 95.5 0.065 1.4E-06 55.6 9.3 86 163-254 273-373 (509)
391 PRK05201 hslU ATP-dependent pr 95.5 0.03 6.6E-07 55.2 6.2 45 141-187 16-74 (443)
392 KOG0726 26S proteasome regulat 95.5 0.029 6.3E-07 51.7 5.7 70 163-254 219-288 (440)
393 COG0488 Uup ATPase components 95.5 0.053 1.1E-06 55.8 8.3 63 230-295 158-223 (530)
394 PTZ00185 ATPase alpha subunit; 95.5 0.11 2.4E-06 52.5 10.2 92 163-255 189-300 (574)
395 cd00267 ABC_ATPase ABC (ATP-bi 95.5 0.025 5.5E-07 48.5 5.2 116 163-288 25-146 (157)
396 TIGR01313 therm_gnt_kin carboh 95.5 0.01 2.2E-07 51.4 2.6 21 166-186 1-21 (163)
397 PRK14530 adenylate kinase; Pro 95.5 0.013 2.7E-07 53.4 3.4 23 164-186 4-26 (215)
398 CHL00081 chlI Mg-protoporyphyr 95.5 0.02 4.2E-07 55.6 4.8 47 140-188 17-63 (350)
399 PHA02244 ATPase-like protein 95.4 0.038 8.1E-07 53.6 6.6 43 142-186 98-142 (383)
400 PRK05439 pantothenate kinase; 95.4 0.1 2.2E-06 49.9 9.4 27 161-187 84-110 (311)
401 PRK10416 signal recognition pa 95.4 0.11 2.4E-06 50.0 10.0 26 162-187 113-138 (318)
402 COG3640 CooC CO dehydrogenase 95.4 0.03 6.5E-07 50.2 5.5 42 165-208 2-43 (255)
403 PF13086 AAA_11: AAA domain; P 95.4 0.023 5E-07 52.0 5.2 34 152-187 8-41 (236)
404 cd03369 ABCC_NFT1 Domain 2 of 95.4 0.14 3E-06 46.2 10.0 25 162-186 33-57 (207)
405 PRK14737 gmk guanylate kinase; 95.4 0.015 3.1E-07 51.5 3.5 25 162-186 3-27 (186)
406 PRK06851 hypothetical protein; 95.4 0.21 4.5E-06 48.8 11.7 42 160-203 211-252 (367)
407 PRK12597 F0F1 ATP synthase sub 95.4 0.078 1.7E-06 53.4 8.9 91 162-254 142-247 (461)
408 PRK13947 shikimate kinase; Pro 95.4 0.014 3E-07 50.9 3.3 23 165-187 3-25 (171)
409 TIGR01069 mutS2 MutS2 family p 95.4 0.04 8.6E-07 59.6 7.3 25 162-186 321-345 (771)
410 cd00820 PEPCK_HprK Phosphoenol 95.4 0.015 3.3E-07 45.9 3.1 22 163-184 15-36 (107)
411 TIGR03880 KaiC_arch_3 KaiC dom 95.4 0.066 1.4E-06 48.9 7.9 47 163-214 16-62 (224)
412 PRK10078 ribose 1,5-bisphospho 95.4 0.013 2.9E-07 51.9 3.2 23 164-186 3-25 (186)
413 PRK05922 type III secretion sy 95.4 0.12 2.6E-06 51.6 10.1 89 162-255 156-258 (434)
414 PRK13949 shikimate kinase; Pro 95.4 0.014 3E-07 50.8 3.2 22 165-186 3-24 (169)
415 PRK12339 2-phosphoglycerate ki 95.3 0.016 3.6E-07 51.6 3.6 24 163-186 3-26 (197)
416 cd03213 ABCG_EPDR ABCG transpo 95.3 0.06 1.3E-06 48.0 7.3 25 162-186 34-58 (194)
417 PRK10875 recD exonuclease V su 95.3 0.044 9.5E-07 57.6 7.2 54 163-216 167-220 (615)
418 PF00158 Sigma54_activat: Sigm 95.3 0.023 4.9E-07 49.3 4.3 43 142-186 1-45 (168)
419 TIGR03305 alt_F1F0_F1_bet alte 95.3 0.082 1.8E-06 52.9 8.8 91 163-255 138-243 (449)
420 TIGR02329 propionate_PrpR prop 95.3 0.082 1.8E-06 54.6 9.0 44 141-186 213-258 (526)
421 cd00464 SK Shikimate kinase (S 95.3 0.015 3.2E-07 49.6 3.1 21 166-186 2-22 (154)
422 PF03029 ATP_bind_1: Conserved 95.3 0.02 4.4E-07 52.7 4.2 33 168-203 1-33 (238)
423 PRK09302 circadian clock prote 95.3 0.046 1E-06 56.7 7.3 89 162-255 30-141 (509)
424 COG0194 Gmk Guanylate kinase [ 95.3 0.017 3.8E-07 49.9 3.4 24 163-186 4-27 (191)
425 KOG0927 Predicted transporter 95.3 0.44 9.4E-06 48.1 13.3 118 163-282 416-566 (614)
426 TIGR01039 atpD ATP synthase, F 95.2 0.12 2.6E-06 51.7 9.7 92 162-255 142-248 (461)
427 PRK06731 flhF flagellar biosyn 95.2 0.11 2.3E-06 48.8 8.8 89 162-254 74-164 (270)
428 PF06068 TIP49: TIP49 C-termin 95.2 0.12 2.5E-06 50.0 9.1 49 138-186 22-73 (398)
429 TIGR02655 circ_KaiC circadian 95.2 0.047 1E-06 56.1 7.0 87 162-253 20-129 (484)
430 cd01672 TMPK Thymidine monopho 95.2 0.04 8.6E-07 49.2 5.8 23 165-187 2-24 (200)
431 COG1116 TauB ABC-type nitrate/ 95.2 0.016 3.5E-07 52.5 3.2 25 162-186 28-52 (248)
432 cd01125 repA Hexameric Replica 95.2 0.12 2.6E-06 47.8 9.0 22 165-186 3-24 (239)
433 PF13521 AAA_28: AAA domain; P 95.2 0.015 3.4E-07 50.2 2.9 21 166-186 2-22 (163)
434 TIGR02030 BchI-ChlI magnesium 95.2 0.031 6.8E-07 54.2 5.2 44 141-186 5-48 (337)
435 PRK13975 thymidylate kinase; P 95.2 0.018 4E-07 51.4 3.5 24 164-187 3-26 (196)
436 PRK06761 hypothetical protein; 95.2 0.041 8.8E-07 51.7 5.8 24 164-187 4-27 (282)
437 cd03282 ABC_MSH4_euk MutS4 hom 95.2 0.0091 2E-07 53.6 1.4 24 163-186 29-52 (204)
438 COG0714 MoxR-like ATPases [Gen 95.2 0.051 1.1E-06 52.9 6.8 62 142-213 26-87 (329)
439 PRK14738 gmk guanylate kinase; 95.1 0.02 4.2E-07 51.7 3.6 25 162-186 12-36 (206)
440 PF05970 PIF1: PIF1-like helic 95.1 0.039 8.4E-07 54.5 6.0 39 149-187 8-46 (364)
441 cd01129 PulE-GspE PulE/GspE Th 95.1 0.052 1.1E-06 50.9 6.5 94 155-260 72-165 (264)
442 PLN02165 adenylate isopentenyl 95.1 0.023 5E-07 54.4 4.1 30 158-187 38-67 (334)
443 CHL00206 ycf2 Ycf2; Provisiona 95.1 0.1 2.2E-06 60.2 9.7 24 163-186 1630-1653(2281)
444 PRK15453 phosphoribulokinase; 95.1 0.022 4.7E-07 53.1 3.8 27 161-187 3-29 (290)
445 KOG0735 AAA+-type ATPase [Post 95.1 0.086 1.9E-06 54.6 8.2 149 164-338 702-871 (952)
446 TIGR00041 DTMP_kinase thymidyl 95.1 0.047 1E-06 48.7 5.9 24 164-187 4-27 (195)
447 PRK05688 fliI flagellum-specif 95.1 0.14 3.1E-06 51.3 9.7 89 162-255 167-269 (451)
448 PRK03846 adenylylsulfate kinas 95.1 0.022 4.7E-07 51.0 3.7 27 161-187 22-48 (198)
449 COG0055 AtpD F0F1-type ATP syn 95.1 0.047 1E-06 52.2 6.0 91 163-255 147-252 (468)
450 PRK15064 ABC transporter ATP-b 95.1 0.16 3.4E-06 53.1 10.6 24 163-186 27-50 (530)
451 COG1126 GlnQ ABC-type polar am 95.1 0.018 4E-07 50.9 3.0 25 162-186 27-51 (240)
452 PRK05057 aroK shikimate kinase 95.1 0.021 4.6E-07 49.8 3.5 24 163-186 4-27 (172)
453 KOG3347 Predicted nucleotide k 95.1 0.017 3.7E-07 47.7 2.6 69 163-242 7-75 (176)
454 TIGR00665 DnaB replicative DNA 95.1 2.8 6.1E-05 42.5 19.4 53 163-219 195-247 (434)
455 COG0488 Uup ATPase components 95.0 0.081 1.8E-06 54.5 8.0 132 163-297 348-511 (530)
456 cd01136 ATPase_flagellum-secre 95.0 0.2 4.3E-06 48.2 10.1 88 162-254 68-169 (326)
457 TIGR03496 FliI_clade1 flagella 95.0 0.12 2.6E-06 51.5 8.9 88 162-254 136-237 (411)
458 COG1643 HrpA HrpA-like helicas 95.0 0.068 1.5E-06 57.6 7.6 127 149-281 53-204 (845)
459 PRK09280 F0F1 ATP synthase sub 95.0 0.13 2.8E-06 51.7 9.1 91 162-254 143-248 (463)
460 KOG0738 AAA+-type ATPase [Post 95.0 0.025 5.5E-07 54.3 3.8 23 164-186 246-268 (491)
461 PRK09099 type III secretion sy 95.0 0.076 1.7E-06 53.2 7.4 90 162-255 162-264 (441)
462 TIGR02868 CydC thiol reductant 95.0 0.08 1.7E-06 55.3 8.0 25 162-186 360-384 (529)
463 COG3598 RepA RecA-family ATPas 95.0 0.074 1.6E-06 49.9 6.7 91 164-254 90-204 (402)
464 TIGR01041 ATP_syn_B_arch ATP s 95.0 0.082 1.8E-06 53.3 7.6 91 163-254 141-248 (458)
465 PRK09825 idnK D-gluconate kina 95.0 0.023 4.9E-07 49.8 3.3 23 164-186 4-26 (176)
466 PLN02200 adenylate kinase fami 95.0 0.024 5.3E-07 52.1 3.7 24 163-186 43-66 (234)
467 PRK05800 cobU adenosylcobinami 94.9 0.1 2.3E-06 45.3 7.4 82 164-254 2-86 (170)
468 COG0465 HflB ATP-dependent Zn 94.9 0.059 1.3E-06 55.6 6.6 47 140-186 150-206 (596)
469 PRK00698 tmk thymidylate kinas 94.9 0.072 1.6E-06 47.8 6.6 24 164-187 4-27 (205)
470 PRK07196 fliI flagellum-specif 94.9 0.091 2E-06 52.5 7.7 89 162-255 154-256 (434)
471 PRK14532 adenylate kinase; Pro 94.9 0.022 4.8E-07 50.5 3.1 21 166-186 3-23 (188)
472 PRK04182 cytidylate kinase; Pr 94.9 0.024 5.3E-07 49.7 3.4 22 165-186 2-23 (180)
473 TIGR02173 cyt_kin_arch cytidyl 94.9 0.025 5.3E-07 49.2 3.4 22 165-186 2-23 (171)
474 COG2019 AdkA Archaeal adenylat 94.9 0.026 5.6E-07 47.7 3.2 24 163-186 4-27 (189)
475 COG5635 Predicted NTPase (NACH 94.9 0.019 4.1E-07 63.0 3.2 195 164-364 223-448 (824)
476 PF00005 ABC_tran: ABC transpo 94.9 0.022 4.8E-07 47.5 2.9 24 163-186 11-34 (137)
477 smart00072 GuKc Guanylate kina 94.9 0.032 6.8E-07 49.3 4.0 24 163-186 2-25 (184)
478 COG0003 ArsA Predicted ATPase 94.9 0.043 9.3E-07 52.6 5.1 49 163-214 2-50 (322)
479 PF08298 AAA_PrkA: PrkA AAA do 94.9 0.048 1E-06 52.3 5.4 94 140-242 61-167 (358)
480 KOG2170 ATPase of the AAA+ sup 94.9 0.078 1.7E-06 49.3 6.5 77 163-256 110-190 (344)
481 cd01428 ADK Adenylate kinase ( 94.8 0.023 5E-07 50.6 3.1 21 166-186 2-22 (194)
482 TIGR00176 mobB molybdopterin-g 94.8 0.023 5E-07 48.6 3.0 23 165-187 1-23 (155)
483 PRK05917 DNA polymerase III su 94.8 0.72 1.6E-05 43.6 13.1 38 150-187 5-43 (290)
484 TIGR03574 selen_PSTK L-seryl-t 94.8 0.021 4.6E-07 53.2 2.9 23 165-187 1-23 (249)
485 PRK13695 putative NTPase; Prov 94.8 0.04 8.6E-07 48.2 4.5 23 165-187 2-24 (174)
486 TIGR01040 V-ATPase_V1_B V-type 94.8 0.094 2E-06 52.4 7.4 92 162-254 140-257 (466)
487 PRK06793 fliI flagellum-specif 94.8 0.17 3.6E-06 50.6 9.2 90 162-255 155-257 (432)
488 PRK14531 adenylate kinase; Pro 94.8 0.027 5.9E-07 49.7 3.4 23 164-186 3-25 (183)
489 PRK09435 membrane ATPase/prote 94.8 0.26 5.7E-06 47.6 10.3 27 161-187 54-80 (332)
490 PRK13946 shikimate kinase; Pro 94.8 0.031 6.6E-07 49.4 3.6 24 164-187 11-34 (184)
491 COG4619 ABC-type uncharacteriz 94.7 0.044 9.5E-07 46.5 4.2 24 163-186 29-52 (223)
492 PF13604 AAA_30: AAA domain; P 94.7 0.042 9E-07 49.1 4.5 33 155-187 10-42 (196)
493 PLN02796 D-glycerate 3-kinase 94.7 0.23 5E-06 47.9 9.6 26 162-187 99-124 (347)
494 PRK13657 cyclic beta-1,2-gluca 94.7 0.13 2.8E-06 54.5 8.9 25 162-186 360-384 (588)
495 PRK13948 shikimate kinase; Pro 94.7 0.033 7.1E-07 49.0 3.6 25 162-186 9-33 (182)
496 PRK13409 putative ATPase RIL; 94.7 0.094 2E-06 55.2 7.6 134 162-296 364-528 (590)
497 PRK13407 bchI magnesium chelat 94.7 0.04 8.7E-07 53.3 4.5 46 140-187 8-53 (334)
498 COG4136 ABC-type uncharacteriz 94.7 0.051 1.1E-06 45.2 4.4 37 163-202 28-66 (213)
499 TIGR02546 III_secr_ATP type II 94.7 0.24 5.3E-06 49.6 10.2 89 161-254 143-245 (422)
500 PF09848 DUF2075: Uncharacteri 94.7 0.12 2.6E-06 50.8 8.0 41 164-205 2-42 (352)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.8e-67 Score=551.54 Aligned_cols=451 Identities=33% Similarity=0.567 Sum_probs=371.9
Q ss_pred HHHHhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 011568 10 IFKCLCSPICEYFEYYRKLDENMKKLDRVLRELENKKKYIEATLSRAKREQGKEPSNEVSDWLQNVRRINTKAESFKQEV 89 (483)
Q Consensus 10 ~~~~l~s~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~l~~ae~~~~~~~~~~~~~Wl~~l~~~a~~~ed~~d~~ 89 (483)
.+++++..+.+++..+.+.++.+..+++.|..|++++.+++ .+ ++....+..|...+++++|+++++++.+
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~-------a~--~~~~~~~~~~~e~~~~~~~~~e~~~~~~ 78 (889)
T KOG4658|consen 8 GVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLD-------AK--RDDLERRVNWEEDVGDLVYLAEDIIWLF 78 (889)
T ss_pred ehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH-------hh--cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667778888888888889998888888777666544 32 2335678899999999999999998765
Q ss_pred hhc-------C------------cc---------cccchhHHHHHHHHHHHHHHHcCCCCCccccCCCC--CCCcccccc
Q 011568 90 EKG-------N------------CF---------SRAYLGKDVEKKIEEVKEYLQKGCAFTSYVSDAPS--TSGMTLSTT 139 (483)
Q Consensus 90 ~~~-------~------------~~---------~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 139 (483)
... . |+ ....+.+++-+.+++++....++.+........+. ....+..+.
T Consensus 79 ~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~ 158 (889)
T KOG4658|consen 79 LVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSE 158 (889)
T ss_pred HHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcc
Confidence 321 0 00 01124556666666666655444332221111111 111222223
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATAL 219 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 219 (483)
.. ||.+ ..++++++.|.+++..+++|+||||+||||||++++|++..++.+|+.++||.||+.++...++.+|+..+
T Consensus 159 ~~-VG~e--~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l 235 (889)
T KOG4658|consen 159 SD-VGLE--TMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERL 235 (889)
T ss_pred cc-ccHH--HHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHh
Confidence 33 9998 89999999999998899999999999999999999999544999999999999999999999999999999
Q ss_pred cccCCC--CCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccCccccccCCCCCCCCcEEEEecCChhHhhh-cCC-ceEec
Q 011568 220 KQSLPE--NEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFPLEEVGIPEPNEENGCKLVITTRSCRVCRS-MKC-KQVEI 295 (483)
Q Consensus 220 ~~~~~~--~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~ilvTtR~~~v~~~-~~~-~~~~l 295 (483)
+...+. .....+....+.+.|.. +||||||||||+..+|+.++.++|....||+|++|||+..||.. ++. ..+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~L~~-krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 236 GLLDEEWEDKEEDELASKLLNLLEG-KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred ccCCcccchhhHHHHHHHHHHHhcc-CceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 874332 23346888899999998 99999999999999999999999999899999999999999998 776 45899
Q ss_pred cCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHhhcCCCChHHHHHHHHHHhhhh-ccCCCch
Q 011568 296 ELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAASMSGEEEIYEWQNALNELRGRL-RSLNDVD 374 (483)
Q Consensus 296 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~~-~~~~~~~ 374 (483)
..|+++|||.||++.++.......+.+++++++++++|+|+|||++++|++|+.+++..+|+++++.+.+.+ .+.++..
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 999999999999999988744443448999999999999999999999999999999999999999998763 4455667
Q ss_pred hhHHhHHHhhhcCCCCcchhHHHHHhcccCCCccccHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHcCcccccc
Q 011568 375 AKVLGRLEFSYHRLKDEKLRQCFLDCALYPEDFPILKDELIEYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESAE 454 (483)
Q Consensus 375 ~~i~~~l~~sy~~L~~~~~k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~ 454 (483)
+.++.++.+||+.| |+++|.||+|||+||+++.|+++.|+.+|+||||+.+..+...++++|+.|+.+|++++|++...
T Consensus 395 ~~i~~iLklSyd~L-~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 395 ESILPILKLSYDNL-PEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhHHhhhccHhhh-hHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 89999999999999 69999999999999999999999999999999999997777888999999999999999999876
Q ss_pred C---CCeEEeChHHHHHHhhcCc
Q 011568 455 D---GSCVKMHDLIRDMQGRTPC 474 (483)
Q Consensus 455 ~---~~~~~mH~lvr~~a~~~~~ 474 (483)
. ..+|+|||+||++|.++++
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIAS 496 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhc
Confidence 3 4689999999999999998
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3e-47 Score=364.78 Aligned_cols=276 Identities=36% Similarity=0.642 Sum_probs=228.0
Q ss_pred HHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCC--
Q 011568 149 KIVKEIWEDLMG--DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLP-- 224 (483)
Q Consensus 149 ~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-- 224 (483)
.++++|.++|.+ ++.++|+|+|+||+||||||.+++++ ..++.+|+.++|++++...+..+++..|+.+++....
T Consensus 3 ~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~-~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 81 (287)
T PF00931_consen 3 KEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARD-LRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSI 81 (287)
T ss_dssp HHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCH-HHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STS
T ss_pred HHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccc-ccccccccccccccccccccccccccccccccccccccc
Confidence 789999999988 78999999999999999999999998 5588999999999999998999999999999998643
Q ss_pred -CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccCccccccCCCCCCCCcEEEEecCChhHhhhcCC--ceEeccCCChH
Q 011568 225 -ENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFPLEEVGIPEPNEENGCKLVITTRSCRVCRSMKC--KQVEIELLSKK 301 (483)
Q Consensus 225 -~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~ilvTtR~~~v~~~~~~--~~~~l~~L~~~ 301 (483)
...+.......+.+.+.+ +++||||||||+...|+.+...++....|++||||||+..++..+.. ..+++++|+.+
T Consensus 82 ~~~~~~~~~~~~l~~~L~~-~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 82 SDPKDIEELQDQLRELLKD-KRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SCCSSHHHHHHHHHHHHCC-TSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred ccccccccccccchhhhcc-ccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 346778889999999998 89999999999999998888777777789999999999988877663 56999999999
Q ss_pred HHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHhhcCCCChHHHHHHHHHHhhhhccCCCchhhHHhHH
Q 011568 302 EALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDAKVLGRL 381 (483)
Q Consensus 302 ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l 381 (483)
+|++||.+.++......+...++.+++|+++|+|+||||+++|++|+.+.+..+|..+++++.....+..+....+..++
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l 240 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSAL 240 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999987765222233677899999999999999999999997656788999999998876655545678999999
Q ss_pred HhhhcCCCCcchhHHHHHhcccCCCccccHHHHHHHHHHcCCCCCc
Q 011568 382 EFSYHRLKDEKLRQCFLDCALYPEDFPILKDELIEYWIAEGFIEEV 427 (483)
Q Consensus 382 ~~sy~~L~~~~~k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~ 427 (483)
.+||+.| ++++|.||+|||+||+++.|+++.|+++|+++||+.+.
T Consensus 241 ~~s~~~L-~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 241 ELSYDSL-PDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHSS-HTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred eechhcC-CccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999 77999999999999999999999999999999999864
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3e-38 Score=351.75 Aligned_cols=305 Identities=22% Similarity=0.327 Sum_probs=237.2
Q ss_pred cccccccchHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe---CCC--------
Q 011568 139 TRNLAGKRTGKIVKEIWEDLM--GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTV---SQP-------- 205 (483)
Q Consensus 139 ~~~~vGr~~~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---~~~-------- 205 (483)
..++||++ ..++++..+|. .+++++|+|+||||+||||||+.+|+. ...+|+..+|+.. +..
T Consensus 183 ~~~~vG~~--~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~---l~~~F~g~vfv~~~~v~~~~~~~~~~~ 257 (1153)
T PLN03210 183 FEDFVGIE--DHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSR---LSRQFQSSVFIDRAFISKSMEIYSSAN 257 (1153)
T ss_pred cccccchH--HHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHH---HhhcCCeEEEeeccccccchhhccccc
Confidence 34599998 78888887774 456899999999999999999999998 5678988877742 111
Q ss_pred ---CC-HHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccCccccccCCCCCCCCcEEEEecCC
Q 011568 206 ---LD-LIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFPLEEVGIPEPNEENGCKLVITTRS 281 (483)
Q Consensus 206 ---~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~ilvTtR~ 281 (483)
.. ...+..+++.++......... ....+.+.+.+ +|+||||||||+...|+.+.......++||+||||||+
T Consensus 258 ~~~~~~~~~l~~~~l~~il~~~~~~~~---~~~~~~~~L~~-krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd 333 (1153)
T PLN03210 258 PDDYNMKLHLQRAFLSEILDKKDIKIY---HLGAMEERLKH-RKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKD 333 (1153)
T ss_pred ccccchhHHHHHHHHHHHhCCCCcccC---CHHHHHHHHhC-CeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCc
Confidence 01 123444555544322111110 12456677777 99999999999988888876655555789999999999
Q ss_pred hhHhhhcCC-ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHhhcCCCChHHHHHHH
Q 011568 282 CRVCRSMKC-KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAASMSGEEEIYEWQNAL 360 (483)
Q Consensus 282 ~~v~~~~~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l 360 (483)
..++..++. ..|+++.|+.++||+||++++|....+ +....+++++|+++|+|+|||++++|++|++ ++..+|+.++
T Consensus 334 ~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l 411 (1153)
T PLN03210 334 KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDML 411 (1153)
T ss_pred HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHH
Confidence 999887655 458999999999999999999976433 2336789999999999999999999999997 5789999999
Q ss_pred HHHhhhhccCCCchhhHHhHHHhhhcCCCCcchhHHHHHhcccCCCccccHHHHHHHHHHcCCCCCcccHHHHHHHHHHH
Q 011568 361 NELRGRLRSLNDVDAKVLGRLEFSYHRLKDEKLRQCFLDCALYPEDFPILKDELIEYWIAEGFIEEVKDVQAKYDRGHTI 440 (483)
Q Consensus 361 ~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~ 440 (483)
+++... ....+..+|++||+.|+++..|.||+++|+|+.+..++ .+..|++.+.... +..
T Consensus 412 ~~L~~~------~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~ 471 (1153)
T PLN03210 412 PRLRNG------LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIG 471 (1153)
T ss_pred HHHHhC------ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhC
Confidence 998742 24679999999999995456899999999999887653 4677888765432 223
Q ss_pred HHHHHHcCccccccCCCeEEeChHHHHHHhhcCcCC
Q 011568 441 LNRLVNCCLLESAEDGSCVKMHDLIRDMQGRTPCMT 476 (483)
Q Consensus 441 l~~L~~~sll~~~~~~~~~~mH~lvr~~a~~~~~~~ 476 (483)
++.|+++||++... ..|.||||+|+||++++...
T Consensus 472 l~~L~~ksLi~~~~--~~~~MHdLl~~~~r~i~~~~ 505 (1153)
T PLN03210 472 LKNLVDKSLIHVRE--DIVEMHSLLQEMGKEIVRAQ 505 (1153)
T ss_pred hHHHHhcCCEEEcC--CeEEhhhHHHHHHHHHHHhh
Confidence 89999999998764 46999999999999987543
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.69 E-value=2.7e-15 Score=166.42 Aligned_cols=289 Identities=17% Similarity=0.228 Sum_probs=182.2
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~ 218 (483)
..+|-|. +..+.+- .....+++.|+|++|.||||++.++.+. . +.++|+++.. +.+...++..++..
T Consensus 14 ~~~~~R~--rl~~~l~---~~~~~~~~~v~apaG~GKTtl~~~~~~~---~----~~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 14 HNTVVRE--RLLAKLS---GANNYRLVLVTSPAGYGKTTLISQWAAG---K----NNLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred cccCcch--HHHHHHh---cccCCCeEEEECCCCCCHHHHHHHHHHh---C----CCeEEEecCcccCCHHHHHHHHHHH
Confidence 3467776 3444332 1235789999999999999999998865 1 2689999964 55677888888888
Q ss_pred hcccCCCC-------------CCHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc--Ccc-ccccCCCCCCCCcEEEEecCC
Q 011568 219 LKQSLPEN-------------EDKVSRAGRLLRMLKA-KEKFVLILDDMWEAF--PLE-EVGIPEPNEENGCKLVITTRS 281 (483)
Q Consensus 219 l~~~~~~~-------------~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~--~~~-~l~~~l~~~~~~s~ilvTtR~ 281 (483)
++...+.. .+.......+...+.. +.+++|||||++... ... .+...+.....+.++|||||.
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~ 161 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRN 161 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 75322110 1223344445555543 589999999997532 222 222222333456788899997
Q ss_pred hhHhh--h--cCCceEecc----CCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHhhcCCCCh
Q 011568 282 CRVCR--S--MKCKQVEIE----LLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAASMSGEEEI 353 (483)
Q Consensus 282 ~~v~~--~--~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~ 353 (483)
..-.. . .......+. +|+.+|+.+||....+... .++....|.+.|+|+|+++..++..+......
T Consensus 162 ~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~ 235 (903)
T PRK04841 162 LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQNNSS 235 (903)
T ss_pred CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc
Confidence 42211 1 111223444 8999999999987654321 34568899999999999999998777543221
Q ss_pred HHHHHHHHHHhhhhccCCC-chhhHHhHHHh-hhcCCCCcchhHHHHHhcccCCCccccHHHHHHHHHHcCCCCCcccHH
Q 011568 354 YEWQNALNELRGRLRSLND-VDAKVLGRLEF-SYHRLKDEKLRQCFLDCALYPEDFPILKDELIEYWIAEGFIEEVKDVQ 431 (483)
Q Consensus 354 ~~w~~~l~~l~~~~~~~~~-~~~~i~~~l~~-sy~~L~~~~~k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~ 431 (483)
. ...... ... ....+...+.- .++.| |+..+..++..|+++. + +.+. .. .+...
T Consensus 236 ~--~~~~~~-------~~~~~~~~~~~~l~~~v~~~l-~~~~~~~l~~~a~~~~-~--~~~l-~~-----~l~~~----- 291 (903)
T PRK04841 236 L--HDSARR-------LAGINASHLSDYLVEEVLDNV-DLETRHFLLRCSVLRS-M--NDAL-IV-----RVTGE----- 291 (903)
T ss_pred h--hhhhHh-------hcCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhccccc-C--CHHH-HH-----HHcCC-----
Confidence 0 011111 111 12335554433 47899 8899999999999973 3 3222 11 11111
Q ss_pred HHHHHHHHHHHHHHHcCccc-ccc-CCCeEEeChHHHHHHhhcC
Q 011568 432 AKYDRGHTILNRLVNCCLLE-SAE-DGSCVKMHDLIRDMQGRTP 473 (483)
Q Consensus 432 ~~~~~~~~~l~~L~~~sll~-~~~-~~~~~~mH~lvr~~a~~~~ 473 (483)
+.+...|++|.+.+++. +.+ ++.+|++|++++++.+...
T Consensus 292 ---~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ---ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 23467899999999965 333 2458999999999998753
No 5
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.62 E-value=7.5e-14 Score=142.52 Aligned_cols=291 Identities=18% Similarity=0.237 Sum_probs=195.6
Q ss_pred cccccccchHHHHHHHHHHhcCC-CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHH
Q 011568 139 TRNLAGKRTGKIVKEIWEDLMGD-KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIA 216 (483)
Q Consensus 139 ~~~~vGr~~~~~~~~l~~~L~~~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il 216 (483)
+.+.|-|. ++.+.|... +.+.+.|..|+|.|||||+.++... . ..-..+.|.+++. +.++..++..++
T Consensus 18 ~~~~v~R~------rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~---~-~~~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 18 PDNYVVRP------RLLDRLRRANDYRLILISAPAGFGKTTLLAQWREL---A-ADGAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred cccccccH------HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHh---c-CcccceeEeecCCccCCHHHHHHHHH
Confidence 34455555 455555554 7899999999999999999999764 1 2234599999876 567899999999
Q ss_pred HHhcccCCCC-------------CCHHHHHHHHHHHHhc-CCeEEEEEeCCCCc---cCccccccCCCCCCCCcEEEEec
Q 011568 217 TALKQSLPEN-------------EDKVSRAGRLLRMLKA-KEKFVLILDDMWEA---FPLEEVGIPEPNEENGCKLVITT 279 (483)
Q Consensus 217 ~~l~~~~~~~-------------~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~---~~~~~l~~~l~~~~~~s~ilvTt 279 (483)
..++...+.. .+.......+...+.. .++.++||||..-. ..-..+...+.+..++-.+++||
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~S 167 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTS 167 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEe
Confidence 9988544332 2334455566665554 47899999998632 22223333334455688899999
Q ss_pred CChhHhhhcCC--c--eEecc----CCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHhhcCCC
Q 011568 280 RSCRVCRSMKC--K--QVEIE----LLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAASMSGEE 351 (483)
Q Consensus 280 R~~~v~~~~~~--~--~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~ 351 (483)
|+..-.....- . -++++ .|+.+|+.++|........ ....++.+.+..+|.+-|+.+++-.++++.
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~~ 241 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNNT 241 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCCC
Confidence 98654432221 1 13333 3899999999988753321 345688999999999999999998888544
Q ss_pred ChHHHHHHHHHHhhhhccCCCchhhHHh-HHHhhhcCCCCcchhHHHHHhcccCCCccccHHHHHHHHHHcCCCCCcccH
Q 011568 352 EIYEWQNALNELRGRLRSLNDVDAKVLG-RLEFSYHRLKDEKLRQCFLDCALYPEDFPILKDELIEYWIAEGFIEEVKDV 430 (483)
Q Consensus 352 ~~~~w~~~l~~l~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~~k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~ 430 (483)
+...-... +.+....+.. ...--++.| |+.+|..++-||+++.- -+.|+..-..
T Consensus 242 ~~~q~~~~----------LsG~~~~l~dYL~eeVld~L-p~~l~~FLl~~svl~~f----~~eL~~~Ltg---------- 296 (894)
T COG2909 242 SAEQSLRG----------LSGAASHLSDYLVEEVLDRL-PPELRDFLLQTSVLSRF----NDELCNALTG---------- 296 (894)
T ss_pred cHHHHhhh----------ccchHHHHHHHHHHHHHhcC-CHHHHHHHHHHHhHHHh----hHHHHHHHhc----------
Confidence 43322111 1122223332 334556788 88899999999999651 1334433222
Q ss_pred HHHHHHHHHHHHHHHHcCccc-c-ccCCCeEEeChHHHHHHhhcC
Q 011568 431 QAKYDRGHTILNRLVNCCLLE-S-AEDGSCVKMHDLIRDMQGRTP 473 (483)
Q Consensus 431 ~~~~~~~~~~l~~L~~~sll~-~-~~~~~~~~mH~lvr~~a~~~~ 473 (483)
++.+...|++|.+++|+- + .+.+.+|+.|+|+.+|-+.-.
T Consensus 297 ---~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 297 ---EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRL 338 (894)
T ss_pred ---CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhh
Confidence 245677899999999986 3 334789999999999988643
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.41 E-value=2e-10 Score=115.09 Aligned_cols=292 Identities=14% Similarity=0.147 Sum_probs=171.5
Q ss_pred cccccccchHHHHHHHHHHh----cCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHH
Q 011568 139 TRNLAGKRTGKIVKEIWEDL----MGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTE 214 (483)
Q Consensus 139 ~~~~vGr~~~~~~~~l~~~L----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 214 (483)
|..++||+ +++++|...+ .+.....+.|+|++|+|||++++.+++.+... ...-..+++++....+...++..
T Consensus 29 P~~l~~Re--~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~-~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 29 PENLPHRE--EQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI-AVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred CCCCCCHH--HHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEECCcCCCHHHHHHH
Confidence 45699999 7788777776 23345678999999999999999999984222 22234677777777788899999
Q ss_pred HHHHhcc-cCC-CCCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc------CccccccCCCCCCCCcE--EEEecCChh
Q 011568 215 IATALKQ-SLP-ENEDKVSRAGRLLRMLKA-KEKFVLILDDMWEAF------PLEEVGIPEPNEENGCK--LVITTRSCR 283 (483)
Q Consensus 215 il~~l~~-~~~-~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~------~~~~l~~~l~~~~~~s~--ilvTtR~~~ 283 (483)
++.++.. ..+ ...+..+....+.+.+.. +++.+||||+++... .+..+...+. ...+++ +|.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcc
Confidence 9999875 222 233556677777777764 367899999998532 1222221111 112322 455554432
Q ss_pred H--------hhhcCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHc----CCchHHHHHHHHhh----
Q 011568 284 V--------CRSMKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEEC----GRLPLAIVTVAASM---- 347 (483)
Q Consensus 284 v--------~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~----~G~Plai~~~~~~l---- 347 (483)
+ ........+.+++++.++..+++...+.....+ ....++.++.|++.+ |..+.|+.++-.+.
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~-~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYP-GVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhccc-CCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 2 222223458999999999999999876432111 011334555555555 44667776664432
Q ss_pred cCC---CChHHHHHHHHHHhhhhccCCCchhhHHhHHHhhhcCCCCcchhHHHHHhcccCC--CccccHHHHHHH--HHH
Q 011568 348 SGE---EEIYEWQNALNELRGRLRSLNDVDAKVLGRLEFSYHRLKDEKLRQCFLDCALYPE--DFPILKDELIEY--WIA 420 (483)
Q Consensus 348 ~~~---~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~~~~s~fp~--~~~i~~~~li~~--w~a 420 (483)
..+ -+.+....+++... .....-.+..| |.+.|..+..++..-+ ...+....+... .+.
T Consensus 264 ~~~~~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L-~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~ 329 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKSE-------------IVHLSEVLRTL-PLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELC 329 (394)
T ss_pred HcCCCCcCHHHHHHHHHHHH-------------HHHHHHHHhcC-CHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 111 24455555555432 12234457788 7765555544442211 123444444432 222
Q ss_pred cCCCCCcccHHHHHHHHHHHHHHHHHcCccccc
Q 011568 421 EGFIEEVKDVQAKYDRGHTILNRLVNCCLLESA 453 (483)
Q Consensus 421 eg~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~ 453 (483)
+.+-... ........+++.|...|||...
T Consensus 330 ~~~~~~~----~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 330 EELGYEP----RTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHcCCCc----CcHHHHHHHHHHHHhcCCeEEE
Confidence 2221111 1224567799999999999864
No 7
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.40 E-value=1.4e-10 Score=109.96 Aligned_cols=182 Identities=16% Similarity=0.235 Sum_probs=114.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHH-
Q 011568 160 GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLR- 238 (483)
Q Consensus 160 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~- 238 (483)
.....++.|+|++|+|||||++.+++.+. . ..+ ...|+ +....+..+++..++..++.+.. ..+.......+..
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~-~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLD-Q-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-GRDKAALLRELEDF 114 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcC-C-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHH
Confidence 34456899999999999999999998832 1 111 12233 23345778899999999887543 2333333344433
Q ss_pred ---HHhcCCeEEEEEeCCCCcc--CccccccCC---CCCCCCcEEEEecCChhHhhhc--------C---CceEeccCCC
Q 011568 239 ---MLKAKEKFVLILDDMWEAF--PLEEVGIPE---PNEENGCKLVITTRSCRVCRSM--------K---CKQVEIELLS 299 (483)
Q Consensus 239 ---~l~~~~~~LlVlDdv~~~~--~~~~l~~~l---~~~~~~s~ilvTtR~~~v~~~~--------~---~~~~~l~~L~ 299 (483)
....+++.+||+||++... .++.+.... ........|++|.... ..... . ...+.+++++
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 3334588999999998642 333332111 1112233455665432 11111 1 1247899999
Q ss_pred hHHHHHHHHHhhCCCC-CCCCCcchHHHHHHHHHcCCchHHHHHHHHhh
Q 011568 300 KKEALNLFIDKVGSSI-LQVPTLNEGIINEVVEECGRLPLAIVTVAASM 347 (483)
Q Consensus 300 ~~ea~~Lf~~~~~~~~-~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 347 (483)
.+|..+++...+.... .......++..+.|++.|+|.|..|+.++..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999987764321 11112356889999999999999999998776
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.39 E-value=3.6e-10 Score=112.07 Aligned_cols=294 Identities=14% Similarity=0.163 Sum_probs=168.7
Q ss_pred ccccccchHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC---CeEEEEEeCCCCCHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLM----GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKF---NDVIWVTVSQPLDLIKLQ 212 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~~~~~~~~~~~ 212 (483)
..++||+ +++++|..++. +...+.+.|+|++|+|||++++.+++.+....... -..+|+++....+...++
T Consensus 15 ~~l~gRe--~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHRD--EQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCcH--HHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 4599999 78888888774 34456899999999999999999998753221111 236788887777788999
Q ss_pred HHHHHHhc---ccCC-CCCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc-C----ccccccCC-CCCC--CCcEEEEec
Q 011568 213 TEIATALK---QSLP-ENEDKVSRAGRLLRMLKA-KEKFVLILDDMWEAF-P----LEEVGIPE-PNEE--NGCKLVITT 279 (483)
Q Consensus 213 ~~il~~l~---~~~~-~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~-~----~~~l~~~l-~~~~--~~s~ilvTt 279 (483)
..|+.++. ...+ ...+..+....+.+.+.. +++++||||+++... . +..+.... .... ....+|.+|
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 99999983 3322 223445556666666643 468999999998552 1 11221110 1111 223344444
Q ss_pred CChhH--------hhhcCCceEeccCCChHHHHHHHHHhhCCC--CCCCCCcchHHHHHHHHHcCCchHHHH-HHHHhh-
Q 011568 280 RSCRV--------CRSMKCKQVEIELLSKKEALNLFIDKVGSS--ILQVPTLNEGIINEVVEECGRLPLAIV-TVAASM- 347 (483)
Q Consensus 280 R~~~v--------~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~~~G~Plai~-~~~~~l- 347 (483)
..... ...+....+.+++.+.++..+++..++... .....+...+.+..++..+.|.|..+. ++-.+.
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33222 111222358999999999999999886421 111101122334456666678885443 322211
Q ss_pred ---cC---CCChHHHHHHHHHHhhhhccCCCchhhHHhHHHhhhcCCCCcchhHHHHHhcccC--CCccccHHHHHHHH-
Q 011568 348 ---SG---EEEIYEWQNALNELRGRLRSLNDVDAKVLGRLEFSYHRLKDEKLRQCFLDCALYP--EDFPILKDELIEYW- 418 (483)
Q Consensus 348 ---~~---~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~~~~s~fp--~~~~i~~~~li~~w- 418 (483)
.. .-+.+....+.+.+. .....-++..| |.+.+..+..++..- .+..+....+...+
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l-~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGL-PTHSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 11 123444444444432 12234456678 776665555444221 33345555555532
Q ss_pred -HHcCCCCCcccHHHHHHHHHHHHHHHHHcCccccc
Q 011568 419 -IAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESA 453 (483)
Q Consensus 419 -~aeg~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~ 453 (483)
+.+.+-.. ...+....++++.|...||+...
T Consensus 319 ~~~~~~~~~----~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 319 EVCEDIGVD----PLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHhcCCC----CCcHHHHHHHHHHHHhcCCeEEE
Confidence 12211111 12235778899999999999864
No 9
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.37 E-value=1.8e-12 Score=119.91 Aligned_cols=192 Identities=22% Similarity=0.309 Sum_probs=104.9
Q ss_pred ccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHH-------
Q 011568 142 LAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTE------- 214 (483)
Q Consensus 142 ~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~------- 214 (483)
|+||+ +++++|.+++.++..+.+.|+|+.|+|||+|++.+.+.+ +..-..++|+........ .....
T Consensus 1 F~gR~--~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~---~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~ 74 (234)
T PF01637_consen 1 FFGRE--KELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL---KEKGYKVVYIDFLEESNE-SSLRSFIEETSL 74 (234)
T ss_dssp S-S-H--HHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC---T--EECCCHHCCTTBSHH-HHHHHHHHHHHH
T ss_pred CCCHH--HHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh---hhcCCcEEEEecccchhh-hHHHHHHHHHHH
Confidence 68999 899999999988778999999999999999999999982 211113445544343322 11222
Q ss_pred ---HHHHhcccCCC----------CCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc-Ccc---c----c---ccCCCCC
Q 011568 215 ---IATALKQSLPE----------NEDKVSRAGRLLRMLKA-KEKFVLILDDMWEAF-PLE---E----V---GIPEPNE 269 (483)
Q Consensus 215 ---il~~l~~~~~~----------~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~-~~~---~----l---~~~l~~~ 269 (483)
+...+....+. ..........+.+.+.. +++++||+||++... ... . + ......
T Consensus 75 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~- 153 (234)
T PF01637_consen 75 ADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS- 153 (234)
T ss_dssp HCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----
T ss_pred HHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-
Confidence 12223221111 12233444555555554 345999999997655 111 1 1 111122
Q ss_pred CCCcEEEEecCChhHhhh--------cC-CceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHH
Q 011568 270 ENGCKLVITTRSCRVCRS--------MK-CKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAI 340 (483)
Q Consensus 270 ~~~s~ilvTtR~~~v~~~--------~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 340 (483)
.....+++++.+...... .+ ...+.+++|+.+++++++....... ... +..++..++|+..+||+|..|
T Consensus 154 ~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l 231 (234)
T PF01637_consen 154 QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYL 231 (234)
T ss_dssp -TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHH
T ss_pred cCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHH
Confidence 333345555544444332 11 1348999999999999999865433 110 114667899999999999988
Q ss_pred HH
Q 011568 341 VT 342 (483)
Q Consensus 341 ~~ 342 (483)
..
T Consensus 232 ~~ 233 (234)
T PF01637_consen 232 QE 233 (234)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 10
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.34 E-value=5.6e-11 Score=115.55 Aligned_cols=272 Identities=14% Similarity=0.143 Sum_probs=148.1
Q ss_pred cccccccchHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHH
Q 011568 139 TRNLAGKRTGKIVKEIWEDLM-----GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQT 213 (483)
Q Consensus 139 ~~~~vGr~~~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 213 (483)
-.+|+|++ +.++.+..++. +.....+.|+|++|+|||+||+.+++.+ ...+ .+++.+. ......+.
T Consensus 24 ~~~~vG~~--~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~---~~~~~~~-~~~~~~l~ 94 (328)
T PRK00080 24 LDEFIGQE--KVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM---GVNI---RITSGPA-LEKPGDLA 94 (328)
T ss_pred HHHhcCcH--HHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh---CCCe---EEEeccc-ccChHHHH
Confidence 34699998 67766665553 2345678999999999999999999983 2221 2222221 11122233
Q ss_pred HHHHHhcccC----CCCCC-HHHHHHHHHHHHhcCCeEEEEEeCCCCccCccccccCCCCCCCCcEEEEecCChhHhhhc
Q 011568 214 EIATALKQSL----PENED-KVSRAGRLLRMLKAKEKFVLILDDMWEAFPLEEVGIPEPNEENGCKLVITTRSCRVCRSM 288 (483)
Q Consensus 214 ~il~~l~~~~----~~~~~-~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~ilvTtR~~~v~~~~ 288 (483)
.++..+.... ++... .......+...+.+ .+..+++|+..+...+.. .+ .+.+-|..|++...+....
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~-~~~~~~l~~~~~~~~~~~---~l---~~~~li~at~~~~~l~~~L 167 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAMED-FRLDIMIGKGPAARSIRL---DL---PPFTLIGATTRAGLLTSPL 167 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHHHh-cceeeeeccCccccceee---cC---CCceEEeecCCcccCCHHH
Confidence 3333332210 00000 01122223344444 555566665443332221 11 1234566677754332221
Q ss_pred C---CceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHhhcCCCChHHHHHHHHHHhh
Q 011568 289 K---CKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAASMSGEEEIYEWQNALNELRG 365 (483)
Q Consensus 289 ~---~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l~~l~~ 365 (483)
. ...+.+++++.++..+++.+.+....... .++.+..|++.|+|.|-.+..+...+. .|......
T Consensus 168 ~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~--- 235 (328)
T PRK00080 168 RDRFGIVQRLEFYTVEELEKIVKRSARILGVEI---DEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGD--- 235 (328)
T ss_pred HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCC---
Confidence 1 13579999999999999998876554333 567899999999999976655554322 11111000
Q ss_pred hhccC-CCchhhHHhHHHhhhcCCCCcchhHHHH-HhcccCCCccccHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHH-
Q 011568 366 RLRSL-NDVDAKVLGRLEFSYHRLKDEKLRQCFL-DCALYPEDFPILKDELIEYWIAEGFIEEVKDVQAKYDRGHTILN- 442 (483)
Q Consensus 366 ~~~~~-~~~~~~i~~~l~~sy~~L~~~~~k~c~~-~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~l~- 442 (483)
... ...-......+...+..| ++..+..+. .+..|+.+ ++..+.+-... | ...+.+++.++
T Consensus 236 --~~I~~~~v~~~l~~~~~~~~~l-~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g---------~~~~~~~~~~e~ 299 (328)
T PRK00080 236 --GVITKEIADKALDMLGVDELGL-DEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G---------EERDTIEDVYEP 299 (328)
T ss_pred --CCCCHHHHHHHHHHhCCCcCCC-CHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C---------CCcchHHHHhhH
Confidence 000 001122334456667778 665666664 66777655 45555543222 1 11245666677
Q ss_pred HHHHcCcccccc
Q 011568 443 RLVNCCLLESAE 454 (483)
Q Consensus 443 ~L~~~sll~~~~ 454 (483)
.|++.+||+...
T Consensus 300 ~Li~~~li~~~~ 311 (328)
T PRK00080 300 YLIQQGFIQRTP 311 (328)
T ss_pred HHHHcCCcccCC
Confidence 899999998654
No 11
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.27 E-value=2.5e-09 Score=103.21 Aligned_cols=269 Identities=15% Similarity=0.141 Sum_probs=147.4
Q ss_pred cccccchHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 011568 141 NLAGKRTGKIVKEIWEDLM-----GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEI 215 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 215 (483)
.|+|++ +.++.+..++. ......+.++|++|+|||+||+.+++.+ ...+ ..+..+...... .+...
T Consensus 5 ~~iG~~--~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~-~l~~~ 75 (305)
T TIGR00635 5 EFIGQE--KVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPG-DLAAI 75 (305)
T ss_pred HHcCHH--HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCch-hHHHH
Confidence 589998 77887777775 2345668899999999999999999983 2222 222221111122 22233
Q ss_pred HHHhcccC----C--CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccCccccccCCCCCCCCcEEEEecCChhHhhhcC
Q 011568 216 ATALKQSL----P--ENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFPLEEVGIPEPNEENGCKLVITTRSCRVCRSMK 289 (483)
Q Consensus 216 l~~l~~~~----~--~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~ilvTtR~~~v~~~~~ 289 (483)
+..++... + ...+ ......+...+.+ .+..+|+++..+...+.. .+ .+.+-|..||+...+.....
T Consensus 76 l~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~-~~~~~v~~~~~~~~~~~~---~~---~~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLS-PAVEELLYPAMED-FRLDIVIGKGPSARSVRL---DL---PPFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HHhcccCCEEEEehHhhhC-HHHHHHhhHHHhh-hheeeeeccCccccceee---cC---CCeEEEEecCCccccCHHHH
Confidence 33333211 0 0001 1223345555555 566677776554443331 11 22455666777644332211
Q ss_pred ---CceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHhhcCCCChHHHHHHHHHHhhh
Q 011568 290 ---CKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAASMSGEEEIYEWQNALNELRGR 366 (483)
Q Consensus 290 ---~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~ 366 (483)
...+.+++++.++..+++.+.+....... .++.+..|++.|+|.|..+..++..+. ... .....
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~---~~~al~~ia~~~~G~pR~~~~ll~~~~--------~~a--~~~~~ 214 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNVEI---EPEAALEIARRSRGTPRIANRLLRRVR--------DFA--QVRGQ 214 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHHhCCCcchHHHHHHHHH--------HHH--HHcCC
Confidence 23478999999999999998876443333 567888999999999976655554321 000 00000
Q ss_pred hccC-CCchhhHHhHHHhhhcCCCCcchhHHHH-HhcccCCCccccHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHH-H
Q 011568 367 LRSL-NDVDAKVLGRLEFSYHRLKDEKLRQCFL-DCALYPEDFPILKDELIEYWIAEGFIEEVKDVQAKYDRGHTILN-R 443 (483)
Q Consensus 367 ~~~~-~~~~~~i~~~l~~sy~~L~~~~~k~c~~-~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~l~-~ 443 (483)
... ...-......+...|..+ +...+..+. .++.++.+ ++..+.+-... |. ....++..++ .
T Consensus 215 -~~it~~~v~~~l~~l~~~~~~l-~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~---------~~~~~~~~~e~~ 279 (305)
T TIGR00635 215 -KIINRDIALKALEMLMIDELGL-DEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE---------DADTIEDVYEPY 279 (305)
T ss_pred -CCcCHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC---------CcchHHHhhhHH
Confidence 000 000112222245667788 665555555 55666543 44443333221 21 1245677788 6
Q ss_pred HHHcCcccccc
Q 011568 444 LVNCCLLESAE 454 (483)
Q Consensus 444 L~~~sll~~~~ 454 (483)
|++.+||+...
T Consensus 280 Li~~~li~~~~ 290 (305)
T TIGR00635 280 LLQIGFLQRTP 290 (305)
T ss_pred HHHcCCcccCC
Confidence 99999997544
No 12
>PF05729 NACHT: NACHT domain
Probab=99.22 E-value=9.5e-11 Score=102.23 Aligned_cols=142 Identities=23% Similarity=0.292 Sum_probs=88.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCC---CCCeEEEEEeCCCCCHH---HHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPN---KFNDVIWVTVSQPLDLI---KLQTEIATALKQSLPENEDKVSRAGRLL 237 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---~f~~~~wv~~~~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~l~ 237 (483)
+++.|+|.+|+||||+++.++..+..... .+...+|++........ .+...|..+..... ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 57899999999999999999988532221 14567777776533322 33333333332211 11111 233
Q ss_pred HHHhcCCeEEEEEeCCCCccCc---------cc-cccCCCC-CCCCcEEEEecCChhH---hhhcCC-ceEeccCCChHH
Q 011568 238 RMLKAKEKFVLILDDMWEAFPL---------EE-VGIPEPN-EENGCKLVITTRSCRV---CRSMKC-KQVEIELLSKKE 302 (483)
Q Consensus 238 ~~l~~~~~~LlVlDdv~~~~~~---------~~-l~~~l~~-~~~~s~ilvTtR~~~v---~~~~~~-~~~~l~~L~~~e 302 (483)
..+...++++||||++++...- .. +...+.. ..++++++||||.... ...... ..+.+.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 3444458999999999864331 11 1111221 2568999999998766 222333 358999999999
Q ss_pred HHHHHHHhh
Q 011568 303 ALNLFIDKV 311 (483)
Q Consensus 303 a~~Lf~~~~ 311 (483)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998764
No 13
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.16 E-value=1.8e-09 Score=116.49 Aligned_cols=306 Identities=14% Similarity=0.211 Sum_probs=180.1
Q ss_pred ccccchHHHHHHHHHHh---cCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCC---HHHHHHHH
Q 011568 142 LAGKRTGKIVKEIWEDL---MGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLD---LIKLQTEI 215 (483)
Q Consensus 142 ~vGr~~~~~~~~l~~~L---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~---~~~~~~~i 215 (483)
++||+ .+++.|...+ ..+...++.|.|.+|+|||+|+++|...+.+.+..|-...+-....+.. ..+.++++
T Consensus 2 l~GRe--~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 2 LYGRE--TELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCchH--hHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHH
Confidence 78999 5777766665 4456779999999999999999999998543323332222222222222 33344444
Q ss_pred HHHhcccCCC-------------------------------C----------CCHH-----HHHHHHHHHHhcCCeEEEE
Q 011568 216 ATALKQSLPE-------------------------------N----------EDKV-----SRAGRLLRMLKAKEKFVLI 249 (483)
Q Consensus 216 l~~l~~~~~~-------------------------------~----------~~~~-----~~~~~l~~~l~~~~~~LlV 249 (483)
+.++...... . .... .....+.......++.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 4443110000 0 0001 1112223333345699999
Q ss_pred EeCC-C-CccCccccccCCCCCC----CCcEEEE--ecCCh--hHhhhc-CCceEeccCCChHHHHHHHHHhhCCCCCCC
Q 011568 250 LDDM-W-EAFPLEEVGIPEPNEE----NGCKLVI--TTRSC--RVCRSM-KCKQVEIELLSKKEALNLFIDKVGSSILQV 318 (483)
Q Consensus 250 lDdv-~-~~~~~~~l~~~l~~~~----~~s~ilv--TtR~~--~v~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 318 (483)
+||+ | |...++-+........ ....|.. |.+.. .+.... ..+.|.|.||+..+...+...........
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~- 238 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL- 238 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc-
Confidence 9999 4 3333322211111100 0112322 22322 111111 22569999999999999999887664222
Q ss_pred CCcchHHHHHHHHHcCCchHHHHHHHHhhcCC------CChHHHHHHHHHHhhhhccCCCchhhHHhHHHhhhcCCCCcc
Q 011568 319 PTLNEGIINEVVEECGRLPLAIVTVAASMSGE------EEIYEWQNALNELRGRLRSLNDVDAKVLGRLEFSYHRLKDEK 392 (483)
Q Consensus 319 ~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~------~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~ 392 (483)
..+....|+++..|+|+.+..+-..+..+ .+...|..-..++. ..+..+.+...+..-.+.| |..
T Consensus 239 ---~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~-----~~~~~~~vv~~l~~rl~kL-~~~ 309 (849)
T COG3899 239 ---PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG-----ILATTDAVVEFLAARLQKL-PGT 309 (849)
T ss_pred ---cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC-----CchhhHHHHHHHHHHHhcC-CHH
Confidence 34678899999999999999999888762 34455554443332 1222334666788999999 899
Q ss_pred hhHHHHHhcccCCCccccHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHcCccccc-----cC-CC---eEEeCh
Q 011568 393 LRQCFLDCALYPEDFPILKDELIEYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESA-----ED-GS---CVKMHD 463 (483)
Q Consensus 393 ~k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~-----~~-~~---~~~mH~ 463 (483)
.|..+...|++...| +.+.|-..+-. ....++...++.|....++-.. .. .. |-..|+
T Consensus 310 t~~Vl~~AA~iG~~F--~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~ 376 (849)
T COG3899 310 TREVLKAAACIGNRF--DLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHD 376 (849)
T ss_pred HHHHHHHHHHhCccC--CHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHH
Confidence 999999999996555 45555555422 2235666677777766666422 11 11 226799
Q ss_pred HHHHHHhhc
Q 011568 464 LIRDMQGRT 472 (483)
Q Consensus 464 lvr~~a~~~ 472 (483)
+|++.|-+.
T Consensus 377 ~vqqaaY~~ 385 (849)
T COG3899 377 RVQQAAYNL 385 (849)
T ss_pred HHHHHHhcc
Confidence 999988764
No 14
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.12 E-value=2.3e-08 Score=94.88 Aligned_cols=219 Identities=18% Similarity=0.208 Sum_probs=130.0
Q ss_pred ccccccchHHHH---HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 011568 140 RNLAGKRTGKIV---KEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIA 216 (483)
Q Consensus 140 ~~~vGr~~~~~~---~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 216 (483)
..+||.+ ..+ .-|...+..+.+.-..+|||+|+||||||+.+... ....| ..++...+-..-+++++
T Consensus 24 de~vGQ~--HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~---~~~~f-----~~~sAv~~gvkdlr~i~ 93 (436)
T COG2256 24 DEVVGQE--HLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGT---TNAAF-----EALSAVTSGVKDLREII 93 (436)
T ss_pred HHhcChH--hhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHh---hCCce-----EEeccccccHHHHHHHH
Confidence 3477765 222 34556677788889999999999999999999987 33333 33333222222222222
Q ss_pred HHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC--ccCccccccCCCCCCCCcEEEE--ecCChhHh----hhc
Q 011568 217 TALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWE--AFPLEEVGIPEPNEENGCKLVI--TTRSCRVC----RSM 288 (483)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~s~ilv--TtR~~~v~----~~~ 288 (483)
..-.+....+++.+|++|.|+. ..+.+. .+|.-..|..|+| ||.++... -..
T Consensus 94 -----------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~---lLp~vE~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 94 -----------------EEARKNRLLGRRTILFLDEIHRFNKAQQDA---LLPHVENGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred -----------------HHHHHHHhcCCceEEEEehhhhcChhhhhh---hhhhhcCCeEEEEeccCCCCCeeecHHHhh
Confidence 2222223324899999999974 333443 3455567877776 66665432 222
Q ss_pred CCceEeccCCChHHHHHHHHHhhCCC----CCCCCCcchHHHHHHHHHcCCchHHHHHHH----HhhcCCC--ChHHHHH
Q 011568 289 KCKQVEIELLSKKEALNLFIDKVGSS----ILQVPTLNEGIINEVVEECGRLPLAIVTVA----ASMSGEE--EIYEWQN 358 (483)
Q Consensus 289 ~~~~~~l~~L~~~ea~~Lf~~~~~~~----~~~~~~~~~~~~~~i~~~~~G~Plai~~~~----~~l~~~~--~~~~w~~ 358 (483)
.+..+.+++|+.++...++.+.+... ........++....++..++|--.++-... ..-+.+. ..+..++
T Consensus 154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~ 233 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEE 233 (436)
T ss_pred hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHH
Confidence 34568999999999999999844332 111111245678889999999765432222 2222221 2455555
Q ss_pred HHHHHhhhhccCCCchhhHHhHHHhhhcCC
Q 011568 359 ALNELRGRLRSLNDVDAKVLGRLEFSYHRL 388 (483)
Q Consensus 359 ~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L 388 (483)
.+++.........+.+.++..+|.-|...=
T Consensus 234 ~l~~~~~~~Dk~gD~hYdliSA~hKSvRGS 263 (436)
T COG2256 234 ILQRRSARFDKDGDAHYDLISALHKSVRGS 263 (436)
T ss_pred HHhhhhhccCCCcchHHHHHHHHHHhhccC
Confidence 555433332333345667778888887766
No 15
>PRK06893 DNA replication initiation factor; Validated
Probab=99.03 E-value=2.1e-09 Score=98.79 Aligned_cols=174 Identities=12% Similarity=0.189 Sum_probs=101.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATAL 219 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 219 (483)
++|+|.+.......+.+.......+.+.|+|++|+|||+|++.+++.+.. ....+.|+++.... ...
T Consensus 16 d~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~---~~~~~~y~~~~~~~---~~~------- 82 (229)
T PRK06893 16 DNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLL---NQRTAIYIPLSKSQ---YFS------- 82 (229)
T ss_pred cccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEeeHHHhh---hhh-------
Confidence 34665442122222333333334467899999999999999999998422 23346677753210 000
Q ss_pred cccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc---cCccc-cccCCCC-CCCCcEEE-EecCC---------hhH
Q 011568 220 KQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEA---FPLEE-VGIPEPN-EENGCKLV-ITTRS---------CRV 284 (483)
Q Consensus 220 ~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~---~~~~~-l~~~l~~-~~~~s~il-vTtR~---------~~v 284 (483)
..+.+.+. +.-+|+|||+|.. ..|+. +...+.. ...+..+| +|+.. +.+
T Consensus 83 --------------~~~~~~~~--~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L 146 (229)
T PRK06893 83 --------------PAVLENLE--QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDL 146 (229)
T ss_pred --------------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhH
Confidence 01122222 3459999999853 22331 2111211 12344554 45543 234
Q ss_pred hhhcCC-ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHH
Q 011568 285 CRSMKC-KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAA 345 (483)
Q Consensus 285 ~~~~~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 345 (483)
...+.. ..+++++++.++.++++++.+....... .++...-|++.+.|..-.+..+-.
T Consensus 147 ~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l---~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 147 ASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIEL---SDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHH
Confidence 444333 3589999999999999998886543333 567888999999887766554443
No 16
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.96 E-value=1.6e-07 Score=97.76 Aligned_cols=293 Identities=15% Similarity=0.138 Sum_probs=158.2
Q ss_pred cccccccchHHHHHHHHHHhc----CC-CceEEEEEcCCCCcHHHHHHHHHhhhccCC--CCCC--eEEEEEeCCCCCHH
Q 011568 139 TRNLAGKRTGKIVKEIWEDLM----GD-KVSKIGVWGMGGIGKTTIMSNINNKLHEKP--NKFN--DVIWVTVSQPLDLI 209 (483)
Q Consensus 139 ~~~~vGr~~~~~~~~l~~~L~----~~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~f~--~~~wv~~~~~~~~~ 209 (483)
|..++||+ +++++|..+|. +. ...++.|+|++|+|||++++.|.+.+.... ...+ .+++|++....+..
T Consensus 754 PD~LPhRE--eEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 754 PKYLPCRE--KEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred CCcCCChH--HHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 34688999 77777766653 22 235778999999999999999998753211 2222 36788887777888
Q ss_pred HHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHhc--CCeEEEEEeCCCCccC--ccccccCCC-CCCCCcEEEE--ecCC
Q 011568 210 KLQTEIATALKQSLP-ENEDKVSRAGRLLRMLKA--KEKFVLILDDMWEAFP--LEEVGIPEP-NEENGCKLVI--TTRS 281 (483)
Q Consensus 210 ~~~~~il~~l~~~~~-~~~~~~~~~~~l~~~l~~--~~~~LlVlDdv~~~~~--~~~l~~~l~-~~~~~s~ilv--TtR~ 281 (483)
.++..|..+|....+ ...........+...+.. +...+||||+++.... -+.+...+. ....+++|+| +|..
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 899999999854332 233444555666665532 2356999999984321 111111111 1123445443 3322
Q ss_pred --------hhHhhhcCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHH---HcCC-chHHHHHHHHhhcC
Q 011568 282 --------CRVCRSMKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVE---ECGR-LPLAIVTVAASMSG 349 (483)
Q Consensus 282 --------~~v~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~---~~~G-~Plai~~~~~~l~~ 349 (483)
..+...++...+...|++.++..+++..++...... ..++....+++ ...| .-.||.++-.+...
T Consensus 912 lDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gV---LdDdAIELIArkVAq~SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEI---IDHTAIQLCARKVANVSGDIRKALQICRKAFEN 988 (1164)
T ss_pred hhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCC---CCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhh
Confidence 122223333447789999999999999987643111 12333333333 3334 44555555444322
Q ss_pred CC----ChHHHHHHHHHHhhhhccCCCchhhHHhHHHhhhcCCCCcchhHHHHHhcccC---CCccccHHHHHHHH--HH
Q 011568 350 EE----EIYEWQNALNELRGRLRSLNDVDAKVLGRLEFSYHRLKDEKLRQCFLDCALYP---EDFPILKDELIEYW--IA 420 (483)
Q Consensus 350 ~~----~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~~~~s~fp---~~~~i~~~~li~~w--~a 420 (483)
.. +.+.-..+.+++. ...+.-....| |.+.|..+..+...- ....++-..+.... ++
T Consensus 989 kegskVT~eHVrkAleeiE-------------~srI~e~IktL-PlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lc 1054 (1164)
T PTZ00112 989 KRGQKIVPRDITEATNQLF-------------DSPLTNAINYL-PWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLV 1054 (1164)
T ss_pred cCCCccCHHHHHHHHHHHH-------------hhhHHHHHHcC-CHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHH
Confidence 11 1222222222221 11233344677 766555444333221 12235444444332 22
Q ss_pred c--C-CCCCcccHHHHHHHHHHHHHHHHHcCcccccc
Q 011568 421 E--G-FIEEVKDVQAKYDRGHTILNRLVNCCLLESAE 454 (483)
Q Consensus 421 e--g-~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~ 454 (483)
+ | .+.. . ...+ ....+|.+|...|+|...+
T Consensus 1055 e~~Gk~iGv-~--plTq-RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1055 ETSGKYIGM-C--SNNE-LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred HhhhhhcCC-C--CcHH-HHHHHHHHHHhcCeEEecC
Confidence 3 1 1111 1 1122 6778999999999997643
No 17
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.94 E-value=9.9e-08 Score=95.72 Aligned_cols=176 Identities=15% Similarity=0.197 Sum_probs=103.2
Q ss_pred ccccccchHHHHHH---HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKE---IWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIA 216 (483)
Q Consensus 140 ~~~vGr~~~~~~~~---l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 216 (483)
..+||++ +.+.. +..++.++..+.+.|+|++|+||||||+.+++. .... |+.++....-..-++.++
T Consensus 12 ~d~vGq~--~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~---~~~~-----~~~l~a~~~~~~~ir~ii 81 (413)
T PRK13342 12 DEVVGQE--HLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGA---TDAP-----FEALSAVTSGVKDLREVI 81 (413)
T ss_pred HHhcCcH--HHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHH---hCCC-----EEEEecccccHHHHHHHH
Confidence 3588887 55444 777777777778899999999999999999987 2222 222222111111122222
Q ss_pred HHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEEE--ecCChhHh--h--hc
Q 011568 217 TALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLVI--TTRSCRVC--R--SM 288 (483)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ilv--TtR~~~v~--~--~~ 288 (483)
.. .......+++.+|+||+++... ..+.+...+ ..+..++| ||.+.... . ..
T Consensus 82 ~~-----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l---e~~~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 82 EE-----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHV---EDGTITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred HH-----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHh---hcCcEEEEEeCCCChhhhccHHHhc
Confidence 21 1111222378899999998542 233332222 22444444 34443211 1 11
Q ss_pred CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHH
Q 011568 289 KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAA 345 (483)
Q Consensus 289 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 345 (483)
.+..+.+.+++.++...++.+.+...........++....|++.|+|.|..+..+..
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 124589999999999999988654311100022567788999999999976654443
No 18
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.93 E-value=8.1e-09 Score=95.07 Aligned_cols=165 Identities=15% Similarity=0.204 Sum_probs=101.5
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCC
Q 011568 149 KIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENED 228 (483)
Q Consensus 149 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~ 228 (483)
..++.+..++.......+.|+|++|+|||+||+.+++... ......++++++.-.. ..
T Consensus 24 ~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~------~~------------- 81 (226)
T TIGR03420 24 ELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ------AD------------- 81 (226)
T ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH------hH-------------
Confidence 5677777776666678999999999999999999998832 1233456666543211 00
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCCcc---C-ccccccCCCC-CCCCcEEEEecCChh---------HhhhcC-CceE
Q 011568 229 KVSRAGRLLRMLKAKEKFVLILDDMWEAF---P-LEEVGIPEPN-EENGCKLVITTRSCR---------VCRSMK-CKQV 293 (483)
Q Consensus 229 ~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---~-~~~l~~~l~~-~~~~s~ilvTtR~~~---------v~~~~~-~~~~ 293 (483)
..+...+. +.-+|||||++... . ...+...+.. ...+..+|+||+... +...+. ...+
T Consensus 82 -----~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i 154 (226)
T TIGR03420 82 -----PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVF 154 (226)
T ss_pred -----HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeE
Confidence 01112222 23489999997532 1 2223222211 122347888887432 122222 2468
Q ss_pred eccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHH
Q 011568 294 EIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAA 345 (483)
Q Consensus 294 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 345 (483)
++++++.++...++...+....... .++....|.+.+.|+|..+..+..
T Consensus 155 ~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 155 QLPPLSDEEKIAALQSRAARRGLQL---PDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHH
Confidence 9999999999999987653322222 456778888889999987766543
No 19
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.92 E-value=9.7e-08 Score=98.77 Aligned_cols=183 Identities=12% Similarity=0.167 Sum_probs=109.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCC------------------CCCCeEEEE
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKP------------------NKFNDVIWV 200 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 200 (483)
.++||.+ ..++.|.+++.++++ ..+.++|+.|+||||+|+.+.+.+.... +.|..++++
T Consensus 16 dEVIGQe--~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI 93 (830)
T PRK07003 16 ASLVGQE--HVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM 93 (830)
T ss_pred HHHcCcH--HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence 4599998 788888898887764 5678999999999999999998752110 112222333
Q ss_pred EeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEEEe
Q 011568 201 TVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLVIT 278 (483)
Q Consensus 201 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ilvT 278 (483)
+.+....+.+ .+++++.+. .....++.-++|||+++... .++.+...+-......++|+|
T Consensus 94 DAas~rgVDd-IReLIe~a~-----------------~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILa 155 (830)
T PRK07003 94 DAASNRGVDE-MAALLERAV-----------------YAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILA 155 (830)
T ss_pred cccccccHHH-HHHHHHHHH-----------------hccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 2222111111 111211111 00111255689999998543 244443333222345667766
Q ss_pred cCCh-hHhhhc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCch-HHHHHHHH
Q 011568 279 TRSC-RVCRSM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLP-LAIVTVAA 345 (483)
Q Consensus 279 tR~~-~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai~~~~~ 345 (483)
|.+. .+.... .+..+.+.+++.++..+.+.+......... .++....|++.++|.. -++.++-.
T Consensus 156 Ttd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i---d~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 156 TTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF---EPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred ECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6653 332221 235689999999999999988765443333 5678889999999865 46665443
No 20
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=1.8e-07 Score=95.48 Aligned_cols=192 Identities=15% Similarity=0.195 Sum_probs=105.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCC--CCCeEEEEEeCCCCCHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKPN--KFNDVIWVTVSQPLDLIKLQTEIA 216 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~~il 216 (483)
..+||.+ ..++.|.+++..++. ..+.++|+.|+||||+|+.+.+.+..... ... + .+..+.....++.|.
T Consensus 16 ddVIGQe--~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g----~-~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQE--HVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG----I-TAQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcH--HHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc----C-CCCCCcccHHHHHHH
Confidence 4599998 788888888887764 56799999999999999999988532100 000 0 000111111111111
Q ss_pred HH-----hcccCCCCCCHHHHHHHHHHHH----hcCCeEEEEEeCCCCc--cCccccccCCCCCCCCcE-EEEecCChhH
Q 011568 217 TA-----LKQSLPENEDKVSRAGRLLRML----KAKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCK-LVITTRSCRV 284 (483)
Q Consensus 217 ~~-----l~~~~~~~~~~~~~~~~l~~~l----~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~-ilvTtR~~~v 284 (483)
.. +..+.......++ +..+.+.+ ..++.-++|||+++.. ...+.+...+-.-..+++ |++||....+
T Consensus 89 aG~hpDviEIdAas~~gVDd-IReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDE-MAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred cCCCCcceEecccccCCHHH-HHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 00 0000000011111 11222221 1236679999999854 233333333322223444 4555555444
Q ss_pred hhhc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHH
Q 011568 285 CRSM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVT 342 (483)
Q Consensus 285 ~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 342 (483)
.... .+..+.+..++.++..+.+.+.+....... ..+....|++.++|.|.-...
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~---d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH---EVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 3322 235689999999999999887664332222 456678899999999864433
No 21
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=5.3e-07 Score=88.00 Aligned_cols=172 Identities=17% Similarity=0.242 Sum_probs=118.5
Q ss_pred ccccccchHHHHHHHHHHh----cCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDL----MGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEI 215 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 215 (483)
+.+.+|+ .+++++...| .+....-+.|+|++|+|||+.++.+.+.+........ +++|++....+..+++..|
T Consensus 17 ~~l~~Re--~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 17 EELPHRE--EEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKI 93 (366)
T ss_pred ccccccH--HHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHH
Confidence 3488998 6777766555 3344445999999999999999999999543333333 7999999999999999999
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCccCc--cccccCCCC-CCCCcEE--EEecCChh------
Q 011568 216 ATALKQSLPENEDKVSRAGRLLRMLKA-KEKFVLILDDMWEAFPL--EEVGIPEPN-EENGCKL--VITTRSCR------ 283 (483)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~~~--~~l~~~l~~-~~~~s~i--lvTtR~~~------ 283 (483)
+++++..........+....+.+.+.. ++.+++|||+++....- +-+...+.. ....++| |..+-+..
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 999986555566777777788887765 68999999999843222 111111111 1113443 33333322
Q ss_pred --HhhhcCCceEeccCCChHHHHHHHHHhhCCC
Q 011568 284 --VCRSMKCKQVEIELLSKKEALNLFIDKVGSS 314 (483)
Q Consensus 284 --v~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 314 (483)
+....+...+..+|-+.+|-..++..++...
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~ 206 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEG 206 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh
Confidence 2333344558899999999999999887543
No 22
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.82 E-value=8.1e-09 Score=86.21 Aligned_cols=117 Identities=22% Similarity=0.258 Sum_probs=82.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccC--CCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEK--PNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRML 240 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 240 (483)
.+++.|+|++|+|||++++.+.+.+... ...-..++|++++...+...+...++.+++.......+.......+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4789999999999999999999884211 00134578999988779999999999999987766567788888899999
Q ss_pred hcCCeEEEEEeCCCCc-c--CccccccCCCCCCCCcEEEEecCC
Q 011568 241 KAKEKFVLILDDMWEA-F--PLEEVGIPEPNEENGCKLVITTRS 281 (483)
Q Consensus 241 ~~~~~~LlVlDdv~~~-~--~~~~l~~~l~~~~~~s~ilvTtR~ 281 (483)
...+..+||+|+++.. . .++.+.... + ..+.++|+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 8856679999999754 2 222232222 2 556677776654
No 23
>PRK04195 replication factor C large subunit; Provisional
Probab=98.80 E-value=7.6e-07 Score=91.18 Aligned_cols=242 Identities=13% Similarity=0.197 Sum_probs=133.5
Q ss_pred ccccccchHHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMG----DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEI 215 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 215 (483)
..++|.+ +.++.+..|+.. ...+.+.|+|++|+||||+|+.+++.+ .|+ .+-++.+...+ .+.+..+
T Consensus 14 ~dlvg~~--~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~-~~~i~~~ 84 (482)
T PRK04195 14 SDVVGNE--KAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRT-ADVIERV 84 (482)
T ss_pred HHhcCCH--HHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEccccccc-HHHHHHH
Confidence 4589988 777888887753 226889999999999999999999983 233 33344443222 2233333
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC------ccccccCCCCCCCCcEEEEecCCh-hHhh-h
Q 011568 216 ATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP------LEEVGIPEPNEENGCKLVITTRSC-RVCR-S 287 (483)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~------~~~l~~~l~~~~~~s~ilvTtR~~-~v~~-~ 287 (483)
+.......+ .... ++-+||||+++.... +..+...+. ..+..+|+|+.+. .... .
T Consensus 85 i~~~~~~~s--------------l~~~-~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 85 AGEAATSGS--------------LFGA-RRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHHhhccCc--------------ccCC-CCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence 332221100 0012 678999999985422 222322222 2233455555332 1111 1
Q ss_pred --cCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHhhcCC-C--ChHHHHHHHHH
Q 011568 288 --MKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAASMSGE-E--EIYEWQNALNE 362 (483)
Q Consensus 288 --~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~-~--~~~~w~~~l~~ 362 (483)
-.+..+.+.+++.++....+...+....... .++....|++.++|..-.+......+... . +.+.......
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i---~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~- 223 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC---DDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR- 223 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-
Confidence 1234589999999999999888765443333 46788999999999776554333333322 1 2222211110
Q ss_pred HhhhhccCCCchhhHHhHHHhhhcCCCCcchhHHHHHhcccCCCccccHHHHHHHHHHcCCCCCc
Q 011568 363 LRGRLRSLNDVDAKVLGRLEFSYHRLKDEKLRQCFLDCALYPEDFPILKDELIEYWIAEGFIEEV 427 (483)
Q Consensus 363 l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~ 427 (483)
.+...+++.++..-+..-.+......+.. ..++. ..+..|+.+++....
T Consensus 224 --------~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~~ 272 (482)
T PRK04195 224 --------RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKEY 272 (482)
T ss_pred --------CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhcccccc
Confidence 22334566666655542212222222221 12232 356789999997653
No 24
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.79 E-value=1.7e-07 Score=91.92 Aligned_cols=196 Identities=13% Similarity=0.180 Sum_probs=108.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEeCCCCC-HHHHHH---H
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFN-DVIWVTVSQPLD-LIKLQT---E 214 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~---~ 214 (483)
..++|++ ..++.+..++..+..+.+.++|++|+||||+|+.+++.+. ...+. ..+.++++.... ....+. .
T Consensus 15 ~~~~g~~--~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQD--EVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred HHhcCCH--HHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhhcchhhhhcCcc
Confidence 4588988 7888888888887777789999999999999999998842 22222 234444432110 000000 0
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHhc-----CCeEEEEEeCCCCccC--ccccccCCCCCCCCcEEEEecCCh-hHhh
Q 011568 215 IATALKQSLPENEDKVSRAGRLLRMLKA-----KEKFVLILDDMWEAFP--LEEVGIPEPNEENGCKLVITTRSC-RVCR 286 (483)
Q Consensus 215 il~~l~~~~~~~~~~~~~~~~l~~~l~~-----~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~~s~ilvTtR~~-~v~~ 286 (483)
....++...............+.+.... ..+-+||+||++.... ...+...+......+++|+||.+. .+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 0000000000001111222222222111 2455899999974421 222222222223346677776442 2222
Q ss_pred hcC--CceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHH
Q 011568 287 SMK--CKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVT 342 (483)
Q Consensus 287 ~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 342 (483)
... +..+.+.+++.++...++...+....... .++.+..+++.++|.+-.+..
T Consensus 171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~---~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY---DDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 211 23588999999999999988765433333 567888999999998765543
No 25
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=1.6e-07 Score=99.12 Aligned_cols=180 Identities=12% Similarity=0.178 Sum_probs=106.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCC------------------CCCeEEEE
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKPN------------------KFNDVIWV 200 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv 200 (483)
..+||.+ ..+..|.+++..++. ..+.++|+.|+||||+|+.+++.+..... .|..++++
T Consensus 16 ddIIGQe--~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 16 EQMVGQS--HVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred HHhcCcH--HHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 4589998 778888888887765 45689999999999999999988522100 01112222
Q ss_pred EeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEEe
Q 011568 201 TVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVIT 278 (483)
Q Consensus 201 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilvT 278 (483)
+......+.+ +++|...+. ..-..+++-++|||+++.. ...+.+...+-......++|++
T Consensus 94 dAas~~kVDd-IReLie~v~-----------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 94 DAASRTKVDD-TRELLDNVQ-----------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred ccccccCHHH-HHHHHHHHH-----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 2211111111 122222211 1111136779999999853 3334333232222234455544
Q ss_pred c-CChhHhhh--cCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHH
Q 011568 279 T-RSCRVCRS--MKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVT 342 (483)
Q Consensus 279 t-R~~~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 342 (483)
| ....+... ..+..|++.+|+.++...++.+.+....... .++.+..|++.++|.|--+..
T Consensus 156 TTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~---edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 156 TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPF---EAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred CCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 4 44443322 1235699999999999999988664432222 457788999999998864433
No 26
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=3.7e-07 Score=89.87 Aligned_cols=174 Identities=15% Similarity=0.214 Sum_probs=104.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCC------------------CCCCeEEEE
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKP------------------NKFNDVIWV 200 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 200 (483)
..++|.+ ..++.+...+..+.. ..+.++|+.|+||||+|+.+++.+.... ..+....++
T Consensus 16 ~~iiGq~--~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~ 93 (363)
T PRK14961 16 RDIIGQK--HIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEI 93 (363)
T ss_pred hhccChH--HHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEe
Confidence 4589988 778888888877654 5679999999999999999998842110 011112222
Q ss_pred EeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--CccccccCCCCCCCCcE
Q 011568 201 TVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK----AKEKFVLILDDMWEAF--PLEEVGIPEPNEENGCK 274 (483)
Q Consensus 201 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ 274 (483)
..+....+ +....+.+.+. .+++-++|+|+++... .++.+...+-.......
T Consensus 94 ~~~~~~~v----------------------~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~ 151 (363)
T PRK14961 94 DAASRTKV----------------------EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIK 151 (363)
T ss_pred cccccCCH----------------------HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 21111111 11222222221 1256699999998543 23333333332234556
Q ss_pred EEEecCC-hhHhhhcC--CceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHH
Q 011568 275 LVITTRS-CRVCRSMK--CKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAI 340 (483)
Q Consensus 275 ilvTtR~-~~v~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 340 (483)
+|++|.+ ..+..... +..+++.+++.++..+.+...+....... .++.+..|++.++|.|..+
T Consensus 152 fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i---~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 152 FILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT---DEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred EEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 6666543 33322222 24689999999999998887654432222 4567888999999988643
No 27
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=8.4e-07 Score=90.95 Aligned_cols=179 Identities=14% Similarity=0.176 Sum_probs=106.5
Q ss_pred ccccccchHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhhccCC------------------CCCCeEEEE
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDK-VSKIGVWGMGGIGKTTIMSNINNKLHEKP------------------NKFNDVIWV 200 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 200 (483)
..++|.+ ...+.|..++..+. ...+.++|+.|+||||+|+.+++.+.... +.|..++.+
T Consensus 15 ddVIGQe--~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEI 92 (702)
T PRK14960 15 NELVGQN--HVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEI 92 (702)
T ss_pred HHhcCcH--HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEe
Confidence 4599998 77888888888776 46789999999999999999988842110 112222333
Q ss_pred EeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEEe
Q 011568 201 TVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVIT 278 (483)
Q Consensus 201 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilvT 278 (483)
+.+....+.+ .++++.... ..-..++.-++|+|+++.. .....+...+-....+..+|++
T Consensus 93 DAAs~~~Vdd-IReli~~~~-----------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILa 154 (702)
T PRK14960 93 DAASRTKVED-TRELLDNVP-----------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFA 154 (702)
T ss_pred cccccCCHHH-HHHHHHHHh-----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEE
Confidence 2221111111 111211111 0111126678999999853 2333333233222344566666
Q ss_pred cCC-hhHhhh--cCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHH
Q 011568 279 TRS-CRVCRS--MKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIV 341 (483)
Q Consensus 279 tR~-~~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 341 (483)
|.+ ..+... ..+..+++.+++.++....+.+.+....... .++....|++.++|.+..+.
T Consensus 155 Ttd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i---d~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 155 TTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAA---DQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred ECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 654 222211 2235689999999999999988765443333 56778899999999875443
No 28
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.74 E-value=2.6e-07 Score=86.29 Aligned_cols=162 Identities=18% Similarity=0.239 Sum_probs=104.8
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHH
Q 011568 153 EIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSR 232 (483)
Q Consensus 153 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~ 232 (483)
-|...+..+.++.+.+||++|+||||||+.+.+. .+ .+ ...||..+....-..-++.++++-..
T Consensus 152 llrs~ieq~~ipSmIlWGppG~GKTtlArlia~t-sk--~~--SyrfvelSAt~a~t~dvR~ife~aq~----------- 215 (554)
T KOG2028|consen 152 LLRSLIEQNRIPSMILWGPPGTGKTTLARLIAST-SK--KH--SYRFVELSATNAKTNDVRDIFEQAQN----------- 215 (554)
T ss_pred HHHHHHHcCCCCceEEecCCCCchHHHHHHHHhh-cC--CC--ceEEEEEeccccchHHHHHHHHHHHH-----------
Confidence 3455667788999999999999999999999988 22 22 25677777655444445555443211
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCC--ccCccccccCCCCCCCCcEEEE--ecCChhHh----hhcCCceEeccCCChHHHH
Q 011568 233 AGRLLRMLKAKEKFVLILDDMWE--AFPLEEVGIPEPNEENGCKLVI--TTRSCRVC----RSMKCKQVEIELLSKKEAL 304 (483)
Q Consensus 233 ~~~l~~~l~~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~s~ilv--TtR~~~v~----~~~~~~~~~l~~L~~~ea~ 304 (483)
...+.+ ++.+|++|.|.. ..+.+. .+|.-..|..++| ||.++... ....+..+-|++|..++..
T Consensus 216 ----~~~l~k-rkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~ 287 (554)
T KOG2028|consen 216 ----EKSLTK-RKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVV 287 (554)
T ss_pred ----HHhhhc-ceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHH
Confidence 112333 899999999973 333332 3455677877766 67665432 2223456899999999999
Q ss_pred HHHHHhhC---CC-----CCCCC--CcchHHHHHHHHHcCCchH
Q 011568 305 NLFIDKVG---SS-----ILQVP--TLNEGIINEVVEECGRLPL 338 (483)
Q Consensus 305 ~Lf~~~~~---~~-----~~~~~--~~~~~~~~~i~~~~~G~Pl 338 (483)
.++.+... .. ..+++ .....+..-++..|.|-..
T Consensus 288 ~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 288 TILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 99987432 11 11111 1345677788888888754
No 29
>PF13173 AAA_14: AAA domain
Probab=98.73 E-value=3.7e-08 Score=81.78 Aligned_cols=119 Identities=19% Similarity=0.216 Sum_probs=77.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
.+++.|.|+.|+|||||+++++.++. ....++++++......... +.. ....+.+....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~~~ 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELIKP 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhhcc
Confidence 47899999999999999999998832 3345777776553221000 000 12223333333
Q ss_pred CCeEEEEEeCCCCccCccccccCCCCCCCCcEEEEecCChhHhhhc-----CC--ceEeccCCChHHH
Q 011568 243 KEKFVLILDDMWEAFPLEEVGIPEPNEENGCKLVITTRSCRVCRSM-----KC--KQVEIELLSKKEA 303 (483)
Q Consensus 243 ~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~ilvTtR~~~v~~~~-----~~--~~~~l~~L~~~ea 303 (483)
+..+|+||++....+|......+.+..+..+|++|+.+....... .. ..+++.||+..|-
T Consensus 61 -~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 -GKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred -CCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 688999999998888776655555545678999999876554321 11 2479999998763
No 30
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.73 E-value=4.4e-07 Score=88.21 Aligned_cols=178 Identities=10% Similarity=0.155 Sum_probs=105.2
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe--CCCCCHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTV--SQPLDLIKLQTEIAT 217 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~il~ 217 (483)
..++|++ +.++.+..++.....+.+.|+|++|+||||+++.+++.+. ...+. ..++.+ +...... ...+.+.
T Consensus 17 ~~~~g~~--~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~-~~~i~~~~~~~~~~~-~~~~~i~ 90 (319)
T PRK00440 17 DEIVGQE--EIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWR-ENFLELNASDERGID-VIRNKIK 90 (319)
T ss_pred HHhcCcH--HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCccc-cceEEeccccccchH-HHHHHHH
Confidence 3488998 7888888888877777789999999999999999998842 12222 122222 2221111 1222222
Q ss_pred HhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEEEecCC-hhHhhhc--CCce
Q 011568 218 ALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLVITTRS-CRVCRSM--KCKQ 292 (483)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ilvTtR~-~~v~~~~--~~~~ 292 (483)
.+....+ .....+-++++|+++... ....+...+......+.+|+++.. ..+.... ....
T Consensus 91 ~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 91 EFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 2111110 011146689999987432 122232222222334566666643 2221111 1235
Q ss_pred EeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHH
Q 011568 293 VEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIV 341 (483)
Q Consensus 293 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 341 (483)
+++.+++.++....+...+......- .++.+..+++.++|.+.-+.
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~~i---~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGIEI---TDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 89999999999999888765443333 56788999999999876543
No 31
>PLN03025 replication factor C subunit; Provisional
Probab=98.70 E-value=3.5e-07 Score=88.62 Aligned_cols=179 Identities=13% Similarity=0.176 Sum_probs=104.6
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCe-EEEEEeCCCCCHHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFND-VIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~il~~ 218 (483)
..++|.+ +.++.|..++..++.+-+.++|++|+||||+|..+++.+. ...|.. ++-++.+...+. +..+++++.
T Consensus 13 ~~~~g~~--~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~-~~vr~~i~~ 87 (319)
T PLN03025 13 DDIVGNE--DAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGI-DVVRNKIKM 87 (319)
T ss_pred HHhcCcH--HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccH-HHHHHHHHH
Confidence 3588887 6777788887777777788999999999999999998841 222321 222222222222 223333332
Q ss_pred hcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--ccccccCCCCCCCCcEEEEecCC-hhHhhhc--CCceE
Q 011568 219 LKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP--LEEVGIPEPNEENGCKLVITTRS-CRVCRSM--KCKQV 293 (483)
Q Consensus 219 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~~s~ilvTtR~-~~v~~~~--~~~~~ 293 (483)
+..... .+..++.-++|||+++.... ...+...+-.....+++++++.. ..+.... .+..+
T Consensus 88 ~~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 88 FAQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred HHhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcc
Confidence 211100 00112567999999985421 22222222112334566666543 2221111 12458
Q ss_pred eccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHH
Q 011568 294 EIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAI 340 (483)
Q Consensus 294 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 340 (483)
++.+++.++....+...+......- .++....|++.++|..-.+
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~i---~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVPY---VPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 9999999999999888765443333 4677889999999976443
No 32
>PRK08727 hypothetical protein; Validated
Probab=98.69 E-value=2.6e-07 Score=85.11 Aligned_cols=168 Identities=13% Similarity=0.156 Sum_probs=98.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATAL 219 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 219 (483)
++|++... ..+..+.....+.....+.|+|++|+|||+|++.+++...+ ....+.|+++.. ....+.
T Consensus 19 ~~f~~~~~-n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~---~~~~~~y~~~~~------~~~~~~--- 85 (233)
T PRK08727 19 DSYIAAPD-GLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQ---AGRSSAYLPLQA------AAGRLR--- 85 (233)
T ss_pred hhccCCcH-HHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEeHHH------hhhhHH---
Confidence 34665542 33444434333444467999999999999999999988322 223566766432 111110
Q ss_pred cccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc---Cccc-cccCCCC-CCCCcEEEEecCChh---------Hh
Q 011568 220 KQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF---PLEE-VGIPEPN-EENGCKLVITTRSCR---------VC 285 (483)
Q Consensus 220 ~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---~~~~-l~~~l~~-~~~~s~ilvTtR~~~---------v~ 285 (483)
...+.+. +.-+|||||++... .+.. +...+.. ...+..+|+||+... +.
T Consensus 86 ---------------~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 86 ---------------DALEALE--GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred ---------------HHHHHHh--cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHH
Confidence 1122232 45699999997432 1221 1111111 123556999987522 12
Q ss_pred hhcC-CceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHH
Q 011568 286 RSMK-CKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAI 340 (483)
Q Consensus 286 ~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 340 (483)
..+. ...+++++++.++-..++.+.+....... .++....|++.++|..-.+
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l---~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRRGLAL---DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHHHH
Confidence 2222 23689999999999999998765432222 5677888999998766544
No 33
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=6.3e-07 Score=91.29 Aligned_cols=191 Identities=11% Similarity=0.072 Sum_probs=107.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
..++|.+ ..++.|..++.++.. ..+.++|++|+||||+|+.+++.+... +.+...+|.+.+. ..+...
T Consensus 14 ~dvvGq~--~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~-~~~~~~cg~C~sc--------~~i~~~ 82 (504)
T PRK14963 14 DEVVGQE--HVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS-GEDPKPCGECESC--------LAVRRG 82 (504)
T ss_pred HHhcChH--HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc-CCCCCCCCcChhh--------HHHhcC
Confidence 3589988 677888888877764 567999999999999999999885321 1121122222110 000000
Q ss_pred hc-----ccCCCCCCHHHHHHHHHHHHhc----CCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEEecC-ChhHhh
Q 011568 219 LK-----QSLPENEDKVSRAGRLLRMLKA----KEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVITTR-SCRVCR 286 (483)
Q Consensus 219 l~-----~~~~~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilvTtR-~~~v~~ 286 (483)
.. ........ .+....+.+.+.. +++-++|||+++.. ..++.+...+......+.+|++|. ...+..
T Consensus 83 ~h~dv~el~~~~~~~-vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 83 AHPDVLEIDAASNNS-VEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPP 161 (504)
T ss_pred CCCceEEecccccCC-HHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCCh
Confidence 00 00000011 1111222222211 25679999999743 224444333333233445555553 333322
Q ss_pred hc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHH-HHHHH
Q 011568 287 SM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAI-VTVAA 345 (483)
Q Consensus 287 ~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai-~~~~~ 345 (483)
.. .+..+++.+++.++....+.+.+....... .++.+..|++.++|.+--+ ..+-.
T Consensus 162 ~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~aln~Lek 220 (504)
T PRK14963 162 TILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDAESLLER 220 (504)
T ss_pred HHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 22 235689999999999999988765443333 4567889999999988644 33333
No 34
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.65 E-value=1.9e-07 Score=79.28 Aligned_cols=122 Identities=18% Similarity=0.157 Sum_probs=70.0
Q ss_pred ccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccC
Q 011568 144 GKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSL 223 (483)
Q Consensus 144 Gr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~ 223 (483)
|++ ..+..+...+.....+.+.|+|++|+|||++++.+++.+. ..-..++++..............+...
T Consensus 2 ~~~--~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 2 GQE--EAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred chH--HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence 455 6778888888776678999999999999999999999832 222346677665433221111111000
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc-----cCccccccCCCC---CCCCcEEEEecCChh
Q 011568 224 PENEDKVSRAGRLLRMLKAKEKFVLILDDMWEA-----FPLEEVGIPEPN---EENGCKLVITTRSCR 283 (483)
Q Consensus 224 ~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~-----~~~~~l~~~l~~---~~~~s~ilvTtR~~~ 283 (483)
............ ++.+||+||++.. ..+......+.. ...+..+|+||....
T Consensus 72 -------~~~~~~~~~~~~-~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -------LVRLLFELAEKA-KPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -------hHhHHHHhhccC-CCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 000111112223 7889999999843 112111111111 135678888887543
No 35
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.65 E-value=7.4e-07 Score=93.31 Aligned_cols=200 Identities=15% Similarity=0.147 Sum_probs=116.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC---CeEEEEEeCC---CCCHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKF---NDVIWVTVSQ---PLDLIKLQT 213 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~~~---~~~~~~~~~ 213 (483)
..++|++ ..+..+.+.+.......+.|+|++|+||||||+.+++. ......+ ...-|+.+.. ..+...+..
T Consensus 154 ~~iiGqs--~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~-~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 154 SEIVGQE--RAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEE-AKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred HhceeCc--HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHh-hhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 3588988 67777877776666678999999999999999999877 2222222 1234554432 112222211
Q ss_pred HH---------------HHHhcccCC-----------------CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCc
Q 011568 214 EI---------------ATALKQSLP-----------------ENEDKVSRAGRLLRMLKAKEKFVLILDDMWEA--FPL 259 (483)
Q Consensus 214 ~i---------------l~~l~~~~~-----------------~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~ 259 (483)
.+ +...+.... ...-....+..+.+.+.. ++++++-|+.|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~-~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLED-KRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhh-CeEEeecceeccCCcccc
Confidence 11 111111000 001123456677778877 7888887766533 345
Q ss_pred cccccCCCCCCCCcEEEE--ecCChhH-hhhc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcC
Q 011568 260 EEVGIPEPNEENGCKLVI--TTRSCRV-CRSM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECG 334 (483)
Q Consensus 260 ~~l~~~l~~~~~~s~ilv--TtR~~~v-~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~ 334 (483)
..+...+....+...+++ ||++... .... ....+.+.+++.++.+.++.+.+....... .++....|.+.+.
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l---s~eal~~L~~ys~ 386 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL---AAGVEELIARYTI 386 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHCCC
Confidence 556555555455545555 5554321 1111 123578999999999999998765432222 3556666666665
Q ss_pred CchHHHHHHHHh
Q 011568 335 RLPLAIVTVAAS 346 (483)
Q Consensus 335 G~Plai~~~~~~ 346 (483)
.-+.+++.++.+
T Consensus 387 ~gRraln~L~~~ 398 (615)
T TIGR02903 387 EGRKAVNILADV 398 (615)
T ss_pred cHHHHHHHHHHH
Confidence 557777766544
No 36
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=8.5e-07 Score=89.99 Aligned_cols=178 Identities=15% Similarity=0.192 Sum_probs=104.7
Q ss_pred ccccccchHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhhccCCCC----------------------CCe
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDK-VSKIGVWGMGGIGKTTIMSNINNKLHEKPNK----------------------FND 196 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~----------------------f~~ 196 (483)
..++|.+ ..+..+...+..+. ...+.++|+.|+||||+|+.+++.+...... ...
T Consensus 21 ~dliGq~--~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D 98 (507)
T PRK06645 21 AELQGQE--VLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPD 98 (507)
T ss_pred HHhcCcH--HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence 3588988 67777777676665 3688999999999999999999885221100 011
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccccccCCCCCCCCcE
Q 011568 197 VIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCK 274 (483)
Q Consensus 197 ~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ 274 (483)
++.++.....++.++ ++++..... .-+. +++-++|+|+++.. ..+..+...+......+.
T Consensus 99 v~eidaas~~~vd~I-r~iie~a~~----------------~P~~-~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~v 160 (507)
T PRK06645 99 IIEIDAASKTSVDDI-RRIIESAEY----------------KPLQ-GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHII 160 (507)
T ss_pred EEEeeccCCCCHHHH-HHHHHHHHh----------------cccc-CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEE
Confidence 222222111111111 111111100 0011 26778999999853 334444433333334555
Q ss_pred EE-EecCChhHhhhc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHH
Q 011568 275 LV-ITTRSCRVCRSM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAI 340 (483)
Q Consensus 275 il-vTtR~~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 340 (483)
+| .||+...+.... .+..+++.+++.++....+...+....... .++.+..|++.++|.+.-+
T Consensus 161 fI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i---e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 161 FIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT---DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred EEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 54 455554443322 234689999999999999998875543332 4567788999999987543
No 37
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=1.4e-06 Score=84.20 Aligned_cols=174 Identities=13% Similarity=0.193 Sum_probs=108.7
Q ss_pred cccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhcc---CCCCCCeEEEEEe-CCCCCHHHHHHHH
Q 011568 141 NLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHE---KPNKFNDVIWVTV-SQPLDLIKLQTEI 215 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~-~~~~~~~~~~~~i 215 (483)
.++|.+ +.++.+..++..+.. ..+.++|+.|+||||+|+.++..+.. ...|++...|... +....+.+ .+++
T Consensus 5 ~i~g~~--~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 5 TIIGHE--NIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hccCcH--HHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 478877 778888888877654 67799999999999999999987521 2234454445442 22233333 3334
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCC--CccCccccccCCCCCCCCcEEEEecCChhHh-hh--cCC
Q 011568 216 ATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMW--EAFPLEEVGIPEPNEENGCKLVITTRSCRVC-RS--MKC 290 (483)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~~s~ilvTtR~~~v~-~~--~~~ 290 (483)
...+.... ..+ ++-++|+|+++ +...++.+...+.....++.+|++|.+.... .. ..+
T Consensus 82 ~~~~~~~p----------------~~~-~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 82 IEEVNKKP----------------YEG-DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHHHhcCc----------------ccC-CceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 44332211 112 56677777775 3344555544454445677888777654321 11 123
Q ss_pred ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHH
Q 011568 291 KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIV 341 (483)
Q Consensus 291 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 341 (483)
..+.+.+++.++....+.+..... .++.+..++..++|.|.-+.
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYNDI-------KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhcCC-------CHHHHHHHHHHcCCCHHHHH
Confidence 568999999999988887654211 24457788999999986554
No 38
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.63 E-value=6.1e-08 Score=92.60 Aligned_cols=286 Identities=19% Similarity=0.175 Sum_probs=179.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCe-EEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFND-VIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK 241 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (483)
.+.+.++|+|||||||++-++.. ....|.. +.++......+...+.-.+...++..... -+.....+.....
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~----~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH----AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hheeeeeccCccceehhhhhhHh----HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 58899999999999999999887 1245665 55666666666666777777777765432 2334445666677
Q ss_pred cCCeEEEEEeCCCCccC-ccccccCCCCCCCCcEEEEecCChhHhhhcCCceEeccCCChH-HHHHHHHHhhCCC-----
Q 011568 242 AKEKFVLILDDMWEAFP-LEEVGIPEPNEENGCKLVITTRSCRVCRSMKCKQVEIELLSKK-EALNLFIDKVGSS----- 314 (483)
Q Consensus 242 ~~~~~LlVlDdv~~~~~-~~~l~~~l~~~~~~s~ilvTtR~~~v~~~~~~~~~~l~~L~~~-ea~~Lf~~~~~~~----- 314 (483)
+ ++.++|+||-....+ -..+...+..+.+.-.++.|+|...... +-.+..+++|+.. ++.++|...+...
T Consensus 87 ~-rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~--ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 87 D-RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA--GEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred h-hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc--ccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 7 899999999754321 1111112233455556888888643221 1134677777764 7888887665332
Q ss_pred CCCCCCcchHHHHHHHHHcCCchHHHHHHHHhhcCCCChHHHHHHHHHHhhhhccC----CCchhhHHhHHHhhhcCCCC
Q 011568 315 ILQVPTLNEGIINEVVEECGRLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSL----NDVDAKVLGRLEFSYHRLKD 390 (483)
Q Consensus 315 ~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~----~~~~~~i~~~l~~sy~~L~~ 390 (483)
.... ......+|.++.+|.|++|..+++..+. ....+-..-++.-...+++. ..........+.+||.-| .
T Consensus 164 l~~~---~~a~v~~icr~ldg~~laielaaarv~s-l~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lL-t 238 (414)
T COG3903 164 LTDD---NAAAVAEICRRLDGIPLAIELAAARVRS-LSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALL-T 238 (414)
T ss_pred ecCC---chHHHHHHHHHhhcchHHHHHHHHHHHh-cCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhh-h
Confidence 1122 4567899999999999999999998876 44443333333322222222 112456778899999999 8
Q ss_pred cchhHHHHHhcccCCCccccHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHcCccccccC--CCeEEeChHHHHH
Q 011568 391 EKLRQCFLDCALYPEDFPILKDELIEYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESAED--GSCVKMHDLIRDM 468 (483)
Q Consensus 391 ~~~k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~--~~~~~mH~lvr~~ 468 (483)
...+-.|..++.|...|... ...|.+-|-... .........+-.|++.|+....+. ...|+.-+-+|.|
T Consensus 239 gwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Y 309 (414)
T COG3903 239 GWERALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRY 309 (414)
T ss_pred hHHHHHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 88899999999998887554 334444443211 111334445677888888765433 2245555555555
Q ss_pred Hhhc
Q 011568 469 QGRT 472 (483)
Q Consensus 469 a~~~ 472 (483)
+..+
T Consensus 310 alae 313 (414)
T COG3903 310 ALAE 313 (414)
T ss_pred HHHH
Confidence 5543
No 39
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=9.4e-07 Score=89.28 Aligned_cols=185 Identities=15% Similarity=0.213 Sum_probs=106.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCC------------------CCCeEEEE
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKPN------------------KFNDVIWV 200 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv 200 (483)
..++|.+ .....|...+.++.. +.+.++|++|+||||+|+.+++.+..... .+..++.+
T Consensus 14 ~divGq~--~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el 91 (472)
T PRK14962 14 SEVVGQD--HVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL 91 (472)
T ss_pred HHccCcH--HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE
Confidence 4589987 667777777777765 56899999999999999999887422110 01112233
Q ss_pred EeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEEe
Q 011568 201 TVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVIT 278 (483)
Q Consensus 201 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilvT 278 (483)
+.+...++.++ +.+....... -.. +++-++|+|+++.. ...+.+...+........+|++
T Consensus 92 ~aa~~~gid~i-R~i~~~~~~~----------------p~~-~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ila 153 (472)
T PRK14962 92 DAASNRGIDEI-RKIRDAVGYR----------------PME-GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLA 153 (472)
T ss_pred eCcccCCHHHH-HHHHHHHhhC----------------hhc-CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 32222222211 1222211100 011 25679999999743 2233333333222233444444
Q ss_pred cCC-hhHhhhc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCC-chHHHHHHHHhh
Q 011568 279 TRS-CRVCRSM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGR-LPLAIVTVAASM 347 (483)
Q Consensus 279 tR~-~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~~~~l 347 (483)
|.+ ..+.... .+..+.+.+++.++....+...+......- .++....|++.++| .+.++..+-.+.
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i---~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI---DREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 433 3333222 224589999999999999888764432222 45678889998865 567777776543
No 40
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=1.2e-06 Score=89.61 Aligned_cols=183 Identities=16% Similarity=0.195 Sum_probs=107.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCC------------------CCCCeEEEE
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKP------------------NKFNDVIWV 200 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 200 (483)
..++|.+ ..++.+...+..+.. ..+.++|+.|+||||+|+.+++.+.... ..|...+++
T Consensus 16 ~diiGq~--~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 16 AEVAGQQ--HALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred HHhcCcH--HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 3588988 778888888877654 5688999999999999999998742110 113333444
Q ss_pred EeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEE-E
Q 011568 201 TVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLV-I 277 (483)
Q Consensus 201 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~il-v 277 (483)
.......+.+ .++++..+ ...-..+++-++|+|+++... ..+.+...+-.....+.+| +
T Consensus 94 daas~~gvd~-ir~ii~~~-----------------~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 94 DAASRTGVEE-TKEILDNI-----------------QYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred ecccccCHHH-HHHHHHHH-----------------HhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 3322222221 12222211 111111366799999997432 2333333332222344444 5
Q ss_pred ecCChhHhhhc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchH-HHHHHHH
Q 011568 278 TTRSCRVCRSM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPL-AIVTVAA 345 (483)
Q Consensus 278 TtR~~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~~ 345 (483)
||....+.... .+..+++.+++.++....+.+.+....... .++....|++.++|.+- |+..+-.
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~---e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS---DEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55443333222 235689999999999888887554332222 45677889999999764 5555443
No 41
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=1.7e-06 Score=84.66 Aligned_cols=195 Identities=12% Similarity=0.081 Sum_probs=106.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCC-CCCe-EEEEEeCCCCCHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKPN-KFND-VIWVTVSQPLDLIKLQTEIA 216 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~-~~wv~~~~~~~~~~~~~~il 216 (483)
..++|.+ +.++.+.+.+..+.. ..+.++|+.|+||+|+|..+.+.+..... .... ..=...-..+......+.+.
T Consensus 19 ~~iiGq~--~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~ 96 (365)
T PRK07471 19 TALFGHA--AAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA 96 (365)
T ss_pred hhccChH--HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH
Confidence 4589988 677888888887764 56999999999999999999988522110 0000 00000000000011111111
Q ss_pred HHhcc-----c--CCC------CCCHHHHHHHHHHHHhc----CCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEE
Q 011568 217 TALKQ-----S--LPE------NEDKVSRAGRLLRMLKA----KEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVI 277 (483)
Q Consensus 217 ~~l~~-----~--~~~------~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilv 277 (483)
..-.. . .+. ..-..+.++.+.+.+.. +++-++|+|+++.. .....+...+.....++.+|+
T Consensus 97 ~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL 176 (365)
T PRK07471 97 AGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLL 176 (365)
T ss_pred ccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 10000 0 000 00112334444444432 46779999999743 223333322222233555666
Q ss_pred ecCCh-hHhhh--cCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHH
Q 011568 278 TTRSC-RVCRS--MKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTV 343 (483)
Q Consensus 278 TtR~~-~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 343 (483)
+|.+. .+... ..+..+.+.+++.++..+++....... ..+....++..++|.|+....+
T Consensus 177 ~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-------~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 177 VSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-------PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-------CHHHHHHHHHHcCCCHHHHHHH
Confidence 66543 33222 223569999999999999998764221 2223367899999999865444
No 42
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=5.8e-07 Score=89.48 Aligned_cols=187 Identities=11% Similarity=0.102 Sum_probs=105.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
..++|.+ ..+..|..++.++.. ..+.++|+.|+||||+|+.+++.+.. ..... ...+....+ ...+...
T Consensus 18 ~dvVGQe--~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc--e~~~~--~~pCg~C~s----C~~i~~g 87 (484)
T PRK14956 18 RDVIHQD--LAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC--ENPIG--NEPCNECTS----CLEITKG 87 (484)
T ss_pred HHHhChH--HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc--ccccC--ccccCCCcH----HHHHHcc
Confidence 4589988 677888888888775 46899999999999999999988421 11110 000111111 1111111
Q ss_pred hcccC---CC-CCCHHHHHHHHHHHH----hcCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEE-EecCChhHhhh
Q 011568 219 LKQSL---PE-NEDKVSRAGRLLRML----KAKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLV-ITTRSCRVCRS 287 (483)
Q Consensus 219 l~~~~---~~-~~~~~~~~~~l~~~l----~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~il-vTtR~~~v~~~ 287 (483)
..... +. .....+.+..+.+.+ ..++.-++|+|+++.. ..++.+...+-.......+| .||....+...
T Consensus 88 ~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 88 ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHH
Confidence 10000 00 000011122222222 1236679999999843 33444433332212344444 44444444322
Q ss_pred c--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHH
Q 011568 288 M--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLA 339 (483)
Q Consensus 288 ~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 339 (483)
. .+..|.+.+++.++..+.+.+.+....... .++....|++.++|.+.-
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~---e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY---DQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCChHHH
Confidence 2 235689999999999999888765443332 567889999999999853
No 43
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.59 E-value=3e-06 Score=75.32 Aligned_cols=174 Identities=17% Similarity=0.197 Sum_probs=90.9
Q ss_pred ccccccchHHHHHHHHHHh---c--CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDL---M--GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTE 214 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L---~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 214 (483)
.+|||.+ +.++.+.-++ . ++...-+.+|||+|+||||||.-+++. ....|. +.+.+.-...
T Consensus 24 ~efiGQ~--~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e---~~~~~~---~~sg~~i~k~------ 89 (233)
T PF05496_consen 24 DEFIGQE--HLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE---LGVNFK---ITSGPAIEKA------ 89 (233)
T ss_dssp CCS-S-H--HHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH---CT--EE---EEECCC--SC------
T ss_pred HHccCcH--HHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc---cCCCeE---eccchhhhhH------
Confidence 4699998 5555543332 2 345678999999999999999999999 333332 2332111111
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--C-------ccccccC-CCCCC-----------CCc
Q 011568 215 IATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF--P-------LEEVGIP-EPNEE-----------NGC 273 (483)
Q Consensus 215 il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~-------~~~l~~~-l~~~~-----------~~s 273 (483)
.++... ...+. ++.+|++|+++... . .+..... ....+ +-+
T Consensus 90 ---------------~dl~~i-l~~l~--~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 90 ---------------GDLAAI-LTNLK--EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp ---------------HHHHHH-HHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred ---------------HHHHHH-HHhcC--CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 111111 11122 45577778887421 0 1111000 00111 123
Q ss_pred EEEEecCChhHhhhcCCc---eEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHhhc
Q 011568 274 KLVITTRSCRVCRSMKCK---QVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAASMS 348 (483)
Q Consensus 274 ~ilvTtR~~~v~~~~~~~---~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~ 348 (483)
-|=.|||...+...+... ..+++..+.+|-.+++.+.+.....+- .++.+.+|+++|.|-|--..-+-+-++
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i---~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEI---DEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 344688875554444432 248999999999999988765554443 568899999999999976655554443
No 44
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.58 E-value=7.6e-07 Score=82.12 Aligned_cols=164 Identities=13% Similarity=0.138 Sum_probs=97.5
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCC
Q 011568 149 KIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENED 228 (483)
Q Consensus 149 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~ 228 (483)
..+..+..+......+.+.|+|++|+|||+|++.+++.... .-..+.++++.....
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~---~~~~v~y~~~~~~~~--------------------- 86 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ---RGRAVGYVPLDKRAW--------------------- 86 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEHHHHhh---------------------
Confidence 34555555555555678999999999999999999987322 223466766532100
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCCc---cCccc-cccCCCC-CCCC-cEEEEecCChhH---------hhhcCC-ce
Q 011568 229 KVSRAGRLLRMLKAKEKFVLILDDMWEA---FPLEE-VGIPEPN-EENG-CKLVITTRSCRV---------CRSMKC-KQ 292 (483)
Q Consensus 229 ~~~~~~~l~~~l~~~~~~LlVlDdv~~~---~~~~~-l~~~l~~-~~~~-s~ilvTtR~~~v---------~~~~~~-~~ 292 (483)
....+.+.+. +.-+|+|||++.. ..|+. +...+.. ...| ..+|+||+.... ...+.. ..
T Consensus 87 ---~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~ 161 (235)
T PRK08084 87 ---FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQI 161 (235)
T ss_pred ---hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCce
Confidence 0011122222 2348999999743 22221 1111111 1123 468888875422 222222 45
Q ss_pred EeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHH
Q 011568 293 VEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVA 344 (483)
Q Consensus 293 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 344 (483)
+++.+++.++-.+++.+++....... .++...-|++.+.|..-.+..+-
T Consensus 162 ~~l~~~~~~~~~~~l~~~a~~~~~~l---~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 162 YKLQPLSDEEKLQALQLRARLRGFEL---PEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred eeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhhcCCHHHHHHHH
Confidence 89999999999999988664432223 56788889999988765554443
No 45
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=1.9e-06 Score=84.99 Aligned_cols=169 Identities=12% Similarity=0.143 Sum_probs=98.6
Q ss_pred cccccchHHHHHHHHHHhcCCC----------ceEEEEEcCCCCcHHHHHHHHHhhhccCC-----------------CC
Q 011568 141 NLAGKRTGKIVKEIWEDLMGDK----------VSKIGVWGMGGIGKTTIMSNINNKLHEKP-----------------NK 193 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~~~----------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-----------------~~ 193 (483)
.++|.+ +.++.|..++..+. ...+.++|++|+|||++|..+++.+.... ..
T Consensus 6 ~IiGq~--~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 6 DLVGQE--AVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hccChH--HHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 488887 77788888887653 46688999999999999999988742111 01
Q ss_pred CCeEEEEEeCC-CCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc----CCeEEEEEeCCCCcc--CccccccCC
Q 011568 194 FNDVIWVTVSQ-PLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA----KEKFVLILDDMWEAF--PLEEVGIPE 266 (483)
Q Consensus 194 f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~~--~~~~l~~~l 266 (483)
++.+.++.... ...+ +.++.+.+.... +++-++|+|+++... ..+.+...+
T Consensus 84 hpD~~~i~~~~~~i~i----------------------~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~L 141 (394)
T PRK07940 84 HPDVRVVAPEGLSIGV----------------------DEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAV 141 (394)
T ss_pred CCCEEEeccccccCCH----------------------HHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHh
Confidence 12222322111 1111 112222222221 255688889998532 222232222
Q ss_pred CCCCCCcEEEEecCC-hhHhhhc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHH
Q 011568 267 PNEENGCKLVITTRS-CRVCRSM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIV 341 (483)
Q Consensus 267 ~~~~~~s~ilvTtR~-~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 341 (483)
-....+..+|++|.+ ..+.... .+..+.+.+++.++..+.+..... . .++.+..++..++|.|....
T Consensus 142 Eep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~---~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 142 EEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----V---DPETARRAARASQGHIGRAR 211 (394)
T ss_pred hcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----C---CHHHHHHHHHHcCCCHHHHH
Confidence 222334555555544 3333222 235689999999999998875421 1 34567889999999996543
No 46
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.57 E-value=1.5e-07 Score=83.66 Aligned_cols=46 Identities=17% Similarity=0.373 Sum_probs=31.8
Q ss_pred cccccchHHHHHHHHHHh---cCCCceEEEEEcCCCCcHHHHHHHHHhhhc
Q 011568 141 NLAGKRTGKIVKEIWEDL---MGDKVSKIGVWGMGGIGKTTIMSNINNKLH 188 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 188 (483)
.|+||+ ++++++...+ .....+.+.|+|++|+|||+|+++++..+.
T Consensus 1 ~fvgR~--~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 1 QFVGRE--EEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp --TT-H--HHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCCHH--HHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999 8999999888 334578999999999999999999998843
No 47
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1.1e-06 Score=89.72 Aligned_cols=179 Identities=12% Similarity=0.171 Sum_probs=106.2
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCC------------------CCCCeEEEE
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKP------------------NKFNDVIWV 200 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 200 (483)
..+||.+ ..++.|..++..+.. ..+.++|+.|+||||+|+.+++.+.... +.|..++.+
T Consensus 16 ~divGq~--~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 16 QEVIGQA--PVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred HHhcCCH--HHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 4589998 788889999977765 4679999999999999999998752210 122334444
Q ss_pred EeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEEe
Q 011568 201 TVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVIT 278 (483)
Q Consensus 201 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilvT 278 (483)
+......+.++ ++++..+... -..++.-++|+|+++.. ...+.+...+-.....+++|++
T Consensus 94 daas~~~v~~i-R~l~~~~~~~-----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 94 DAASRTKVEDT-RELLDNIPYA-----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred cccccCCHHHH-HHHHHHHhhc-----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 43332233322 2333322211 01125668999999843 2333333233222334555554
Q ss_pred c-CChhHhhhc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHH
Q 011568 279 T-RSCRVCRSM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIV 341 (483)
Q Consensus 279 t-R~~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 341 (483)
| ....+.... .+..+++.+++.++....+.+.+....... .++....|++.++|.+.-+.
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~---~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF---ENAALDLLARAANGSVRDAL 218 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHH
Confidence 4 333332211 124588999999998887776654433222 45667889999999885443
No 48
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=2e-06 Score=89.10 Aligned_cols=193 Identities=13% Similarity=0.167 Sum_probs=106.0
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCC-CCCeEEEEEeCCCCCHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKPN-KFNDVIWVTVSQPLDLIKLQTEIAT 217 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~il~ 217 (483)
.++||.+ ..+..|.+++..+.. ..+.++|+.|+||||+|+.+.+.+..... ...... ..+++....++.|..
T Consensus 16 ~dviGQe--~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~i~~ 89 (618)
T PRK14951 16 SEMVGQE--HVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRDIDS 89 (618)
T ss_pred HHhcCcH--HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHHHHc
Confidence 4589977 778888888887765 66799999999999999999887522110 000000 011112222222211
Q ss_pred Hhcc-----cCCCCCCHHHHHHHHHHHHhc----CCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEE-ecCChhHh
Q 011568 218 ALKQ-----SLPENEDKVSRAGRLLRMLKA----KEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVI-TTRSCRVC 285 (483)
Q Consensus 218 ~l~~-----~~~~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilv-TtR~~~v~ 285 (483)
.-.. ........+ .++.+.+.... ++.-++|||+++.. ..++.+...+-.....+++|+ ||....+.
T Consensus 90 g~h~D~~eldaas~~~Vd-~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 90 GRFVDYTELDAASNRGVD-EVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred CCCCceeecCcccccCHH-HHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhh
Confidence 0000 000001111 12222222211 24568999999853 233334333322233445554 44433332
Q ss_pred hh--cCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHH
Q 011568 286 RS--MKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVT 342 (483)
Q Consensus 286 ~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 342 (483)
.. ..+..+++.+++.++....+.+.+....... .++.+..|++.++|.+.-+..
T Consensus 169 ~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i---e~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 169 VTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA---EPQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 22 1235689999999999999988765443333 456788999999998754433
No 49
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=2.3e-06 Score=83.27 Aligned_cols=194 Identities=14% Similarity=0.171 Sum_probs=110.1
Q ss_pred cccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCC-CCCeEEEEEeCCCCCHHHHHHHHH
Q 011568 139 TRNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKPN-KFNDVIWVTVSQPLDLIKLQTEIA 216 (483)
Q Consensus 139 ~~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~il 216 (483)
...++|.+ +....+...+.++.. ..+.|+|+.|+||||+|..+.+.+..... .+... .....+......+.+.
T Consensus 22 ~~~l~Gh~--~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 22 NTRLFGHE--EAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIA 96 (351)
T ss_pred hhhccCcH--HHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHH
Confidence 34589988 778888888877764 56999999999999999999998532110 01111 1111111122333332
Q ss_pred HH-------hcccC-C------CCCCHHHHHHHHHHHHhc----CCeEEEEEeCCCCcc--CccccccCCCCCCCCcE-E
Q 011568 217 TA-------LKQSL-P------ENEDKVSRAGRLLRMLKA----KEKFVLILDDMWEAF--PLEEVGIPEPNEENGCK-L 275 (483)
Q Consensus 217 ~~-------l~~~~-~------~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~-i 275 (483)
.. +..+. . .... .+.+..+.+.+.. +++-++|+|+++... ..+.+...+-....+.. |
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~-vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi 175 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAIT-VDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175 (351)
T ss_pred cCCCCCEEEeecccccccccccccCC-HHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence 22 10000 0 0111 2333455555442 467799999998532 22222222211122333 4
Q ss_pred EEecCChhHhhhc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHH
Q 011568 276 VITTRSCRVCRSM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTV 343 (483)
Q Consensus 276 lvTtR~~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 343 (483)
++|++...+.... .+..+.+.+++.++..+++........ . .++....+++.++|.|.....+
T Consensus 176 Lit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~---~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--S---DGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 5555544332222 235699999999999999988432211 1 3566788999999999865444
No 50
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.56 E-value=9.2e-07 Score=81.39 Aligned_cols=163 Identities=12% Similarity=0.159 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCC
Q 011568 149 KIVKEIWEDLMG-DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENE 227 (483)
Q Consensus 149 ~~~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~ 227 (483)
..+..+..+... .....+.|+|++|+|||+||+.+++.... ..+ ...+++...... . +
T Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~--~~~-~~~~i~~~~~~~------~----~-------- 85 (227)
T PRK08903 27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY--GGR-NARYLDAASPLL------A----F-------- 85 (227)
T ss_pred HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh--CCC-cEEEEehHHhHH------H----H--------
Confidence 344445454442 34568899999999999999999987321 122 345555433110 0 0
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--ccccccCCCC-CCCCc-EEEEecCChhHhh--------hcC-CceEe
Q 011568 228 DKVSRAGRLLRMLKAKEKFVLILDDMWEAFP--LEEVGIPEPN-EENGC-KLVITTRSCRVCR--------SMK-CKQVE 294 (483)
Q Consensus 228 ~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--~~~l~~~l~~-~~~~s-~ilvTtR~~~v~~--------~~~-~~~~~ 294 (483)
.. .. ..-+||+||++.... ...+...+.. ...+. .+|+|++...... .+. ...+.
T Consensus 86 ----------~~-~~-~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~ 153 (227)
T PRK08903 86 ----------DF-DP-EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYE 153 (227)
T ss_pred ----------hh-cc-cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEE
Confidence 01 12 345789999974322 1222222211 11233 4667766433221 222 24689
Q ss_pred ccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHhh
Q 011568 295 IELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAASM 347 (483)
Q Consensus 295 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 347 (483)
+++++.++-..++.+......... .++....+++.+.|++..+..+...+
T Consensus 154 l~pl~~~~~~~~l~~~~~~~~v~l---~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 154 LKPLSDADKIAALKAAAAERGLQL---ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999999887777776543322222 56788889999999998877666554
No 51
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=2.5e-06 Score=85.90 Aligned_cols=178 Identities=15% Similarity=0.206 Sum_probs=108.0
Q ss_pred ccccccchHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHhhhccCC------------------CCCCeEEEE
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVS-KIGVWGMGGIGKTTIMSNINNKLHEKP------------------NKFNDVIWV 200 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 200 (483)
..+||.+ ..++.+.+.+..+..+ .+.++|+.|+||||+|+.++..+.... ..+..++.+
T Consensus 13 ~dliGQe--~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 13 KDLVGQD--VLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred HHhcCcH--HHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 4589988 6777777777777654 899999999999999999987531110 122334444
Q ss_pred EeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEEEe
Q 011568 201 TVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLVIT 278 (483)
Q Consensus 201 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ilvT 278 (483)
+.+...++.+ .++++....... +.+ +.-++|+|+++... ..+.+...+-...+.+++|++
T Consensus 91 daas~~~vdd-IR~Iie~~~~~P----------------~~~-~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 91 DAASNTSVDD-IKVILENSCYLP----------------ISS-KFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred ecccCCCHHH-HHHHHHHHHhcc----------------ccC-CceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 4443333322 222332221100 112 56689999997432 233333333222345555554
Q ss_pred c-CChhHhhhc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHH
Q 011568 279 T-RSCRVCRSM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAI 340 (483)
Q Consensus 279 t-R~~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 340 (483)
| ....+.... .+..+++.+++.++....+.+.+....... .++.+..|++.++|.+..+
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i---~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH---DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 4 444443322 235689999999999999988775543333 4667888999999987543
No 52
>PF14516 AAA_35: AAA-like domain
Probab=98.55 E-value=2.5e-05 Score=75.88 Aligned_cols=195 Identities=13% Similarity=0.158 Sum_probs=114.9
Q ss_pred ccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-----CCCHHHHHHHHH
Q 011568 142 LAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-----PLDLIKLQTEIA 216 (483)
Q Consensus 142 ~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~il 216 (483)
.|+|. ..-+++.+.+.+. ...+.|.|+-.+|||+|...+.+.+.+ ..+. ++++++.. ..+..++++.++
T Consensus 13 Yi~R~--~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~--~~~~-~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 13 YIERP--PAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQ--QGYR-CVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred ccCch--HHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHH--CCCE-EEEEEeecCCCcccCCHHHHHHHHH
Confidence 55776 2445555666553 478999999999999999999988422 2343 56777654 134666666666
Q ss_pred HHhcccCCCC-----------CCHHHHHHHHHHHHh-c-CCeEEEEEeCCCCccCc----cccccCC----CC--C--CC
Q 011568 217 TALKQSLPEN-----------EDKVSRAGRLLRMLK-A-KEKFVLILDDMWEAFPL----EEVGIPE----PN--E--EN 271 (483)
Q Consensus 217 ~~l~~~~~~~-----------~~~~~~~~~l~~~l~-~-~~~~LlVlDdv~~~~~~----~~l~~~l----~~--~--~~ 271 (483)
..+.....-. .........+.+.+. . +++.+|+||+++..... ..+...+ .. . ..
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~ 166 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW 166 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence 5554422111 111222233333322 2 48999999999854221 1111111 00 0 01
Q ss_pred CcEEEEecCC--hhHhhhc-----CC-ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHH
Q 011568 272 GCKLVITTRS--CRVCRSM-----KC-KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTV 343 (483)
Q Consensus 272 ~s~ilvTtR~--~~v~~~~-----~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 343 (483)
..-.++...+ ....... +. .+++|++++.+|...|+..+.... .....++|...+||+|..+..+
T Consensus 167 ~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-------~~~~~~~l~~~tgGhP~Lv~~~ 239 (331)
T PF14516_consen 167 QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-------SQEQLEQLMDWTGGHPYLVQKA 239 (331)
T ss_pred ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-------CHHHHHHHHHHHCCCHHHHHHH
Confidence 1112222221 1111111 11 358999999999999998764321 2344899999999999999999
Q ss_pred HHhhcC
Q 011568 344 AASMSG 349 (483)
Q Consensus 344 ~~~l~~ 349 (483)
+..+..
T Consensus 240 ~~~l~~ 245 (331)
T PF14516_consen 240 CYLLVE 245 (331)
T ss_pred HHHHHH
Confidence 999965
No 53
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=1.2e-06 Score=90.76 Aligned_cols=180 Identities=13% Similarity=0.188 Sum_probs=104.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCC------------------CCCCeEEEE
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKP------------------NKFNDVIWV 200 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 200 (483)
..++|.+ ..+..|..++..+.. ..+.++|+.|+||||+|+.+.+.+.... +.|..++.+
T Consensus 16 ddIIGQe--~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 16 ADLVGQE--HVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred HHHcCcH--HHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 4599998 788888888887764 5789999999999999999988742110 011112222
Q ss_pred EeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--ccccccCCCCCCCCcEEEEe
Q 011568 201 TVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP--LEEVGIPEPNEENGCKLVIT 278 (483)
Q Consensus 201 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~~s~ilvT 278 (483)
+......+. .+++++..... .-..+ ++-++|||+++.... ...+...+-.....+++|++
T Consensus 94 daAs~~gVd-~IRelle~a~~----------------~P~~g-k~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILa 155 (709)
T PRK08691 94 DAASNTGID-NIREVLENAQY----------------APTAG-KYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILA 155 (709)
T ss_pred eccccCCHH-HHHHHHHHHHh----------------hhhhC-CcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEE
Confidence 222111111 11111111100 00112 567999999975422 22222222222234556655
Q ss_pred cCC-hhHhhhc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHH
Q 011568 279 TRS-CRVCRSM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVT 342 (483)
Q Consensus 279 tR~-~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 342 (483)
|.+ ..+.... .+..+.+.+++.++....+.+.+....... .++.+..|++.++|.+.-+..
T Consensus 156 Ttd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i---d~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 156 TTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY---EPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred eCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHhCCCHHHHHH
Confidence 543 2222111 124578999999999999988765543333 567789999999998854433
No 54
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.54 E-value=7.8e-07 Score=94.12 Aligned_cols=169 Identities=17% Similarity=0.222 Sum_probs=96.9
Q ss_pred ccccccchHHHH---HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 011568 140 RNLAGKRTGKIV---KEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIA 216 (483)
Q Consensus 140 ~~~vGr~~~~~~---~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 216 (483)
..++|.+ ..+ ..+...+..+..+.+.|+|++|+||||||+.+++. ....|. .++... ..+.+
T Consensus 28 dd~vGQe--~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~---~~~~f~---~lna~~-~~i~d------ 92 (725)
T PRK13341 28 EEFVGQD--HILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANH---TRAHFS---SLNAVL-AGVKD------ 92 (725)
T ss_pred HHhcCcH--HHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH---hcCcce---eehhhh-hhhHH------
Confidence 3588987 444 35666777777778899999999999999999987 333331 111110 01111
Q ss_pred HHhcccCCCCCCHHHHHHHHHHHHh-cCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEEe--cCChh--Hhhhc-
Q 011568 217 TALKQSLPENEDKVSRAGRLLRMLK-AKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVIT--TRSCR--VCRSM- 288 (483)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilvT--tR~~~--v~~~~- 288 (483)
...........+. .+++.+|||||++.. ...+.+...+ ..++.++|+ |.+.. +....
T Consensus 93 ------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 93 ------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALV 157 (725)
T ss_pred ------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhh
Confidence 1111111111121 126789999999743 2233333222 235555553 34321 11111
Q ss_pred -CCceEeccCCChHHHHHHHHHhhCCC----CCCCCCcchHHHHHHHHHcCCchH
Q 011568 289 -KCKQVEIELLSKKEALNLFIDKVGSS----ILQVPTLNEGIINEVVEECGRLPL 338 (483)
Q Consensus 289 -~~~~~~l~~L~~~ea~~Lf~~~~~~~----~~~~~~~~~~~~~~i~~~~~G~Pl 338 (483)
.+..+.+++|+.++...++.+.+... ........++....|++.+.|..-
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 12458999999999999998866411 011112256778889999998754
No 55
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.54 E-value=2.9e-06 Score=75.55 Aligned_cols=160 Identities=14% Similarity=0.171 Sum_probs=91.6
Q ss_pred HHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCC------------------CCCCeEEEEEeCCCCCHHHHHH
Q 011568 153 EIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKP------------------NKFNDVIWVTVSQPLDLIKLQT 213 (483)
Q Consensus 153 ~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~~~~~~~~~~~~~ 213 (483)
.+.+.+.++.. ..+.++|+.|+|||++|+.+.+.+.... ..++...++.......-.+..+
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~ 82 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVR 82 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHH
Confidence 45555666655 6799999999999999999988852210 0122223332221111112222
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEEEecCCh-hHhhhc--
Q 011568 214 EIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLVITTRSC-RVCRSM-- 288 (483)
Q Consensus 214 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ilvTtR~~-~v~~~~-- 288 (483)
+++..+.... .. +.+-++|+|+++... ..+.+...+......+.+|++|++. .+....
T Consensus 83 ~i~~~~~~~~----------------~~-~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s 145 (188)
T TIGR00678 83 ELVEFLSRTP----------------QE-SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS 145 (188)
T ss_pred HHHHHHccCc----------------cc-CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh
Confidence 2222221100 11 267789999997532 2333333333323455566666543 222211
Q ss_pred CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchH
Q 011568 289 KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPL 338 (483)
Q Consensus 289 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 338 (483)
.+..+.+.+++.++..+.+.+. + . .++.+..|++.++|.|.
T Consensus 146 r~~~~~~~~~~~~~~~~~l~~~--g----i---~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 146 RCQVLPFPPLSEEALLQWLIRQ--G----I---SEEAAELLLALAGGSPG 186 (188)
T ss_pred hcEEeeCCCCCHHHHHHHHHHc--C----C---CHHHHHHHHHHcCCCcc
Confidence 1246899999999999999886 1 1 35678899999999985
No 56
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=1.8e-06 Score=89.61 Aligned_cols=189 Identities=12% Similarity=0.146 Sum_probs=105.0
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
..+||.+ ..++.|...+..+.. ..+.++|+.|+||||+|+.+++.+..... + ...++.....++.|...
T Consensus 16 ~divGQe--~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~-~-------~~~pCg~C~~C~~i~~g 85 (647)
T PRK07994 16 AEVVGQE--HVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETG-I-------TATPCGECDNCREIEQG 85 (647)
T ss_pred HHhcCcH--HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccC-C-------CCCCCCCCHHHHHHHcC
Confidence 4589988 778888888877765 45789999999999999999988532110 0 00111111222222110
Q ss_pred hc-----ccCCCCCCHHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEE-EEecCChhHhh
Q 011568 219 LK-----QSLPENEDKVSRAGRLLRMLK----AKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKL-VITTRSCRVCR 286 (483)
Q Consensus 219 l~-----~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~i-lvTtR~~~v~~ 286 (483)
-. ......... +..+.+.+.+. .+++-++|||+++.. ...+.+...+-.-....++ ++||....+..
T Consensus 86 ~~~D~ieidaas~~~V-ddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 86 RFVDLIEIDAASRTKV-EDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCCCceeecccccCCH-HHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 00 000000111 11222222221 136679999999843 2333332222211234444 44555444432
Q ss_pred hc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHH
Q 011568 287 SM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVT 342 (483)
Q Consensus 287 ~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 342 (483)
.. .+..+.+.+++.++....+.+......... .++....|++.++|.+--+..
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~---e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF---EPRALQLLARAADGSMRDALS 219 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 21 235699999999999999987654332222 456778899999998864433
No 57
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.53 E-value=2e-07 Score=85.99 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=62.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCC--CCHHHHHHHHHHHhcccCCCCCCHH------HHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQP--LDLIKLQTEIATALKQSLPENEDKV------SRA 233 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~------~~~ 233 (483)
....++|+|++|+|||||++.+++.+ .. .+|+.++|+.+... .++.++++.+...+-.......... ...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l-~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI-TK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-cc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999984 22 38999999997665 7899999998433322211111111 112
Q ss_pred HHHHHHHhcCCeEEEEEeCCCC
Q 011568 234 GRLLRMLKAKEKFVLILDDMWE 255 (483)
Q Consensus 234 ~~l~~~l~~~~~~LlVlDdv~~ 255 (483)
.........+++.++++|++..
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHH
Confidence 2222222335899999999964
No 58
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.51 E-value=4.7e-06 Score=82.26 Aligned_cols=181 Identities=11% Similarity=0.185 Sum_probs=106.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCC-C------------------CCCeEEE
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKP-N------------------KFNDVIW 199 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~------------------~f~~~~w 199 (483)
..++|.+ +.++.+..++..+.. ..+.++|++|+||||+|+.+...+.... . +++ .++
T Consensus 14 ~~iig~~--~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~ 90 (355)
T TIGR02397 14 EDVIGQE--HIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIE 90 (355)
T ss_pred hhccCcH--HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEE
Confidence 3588988 788888888877654 5788999999999999999988742111 0 111 233
Q ss_pred EEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEE
Q 011568 200 VTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVI 277 (483)
Q Consensus 200 v~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilv 277 (483)
++....... +..++++..+.... .. +++-++|+|+++.. .....+...+......+.+|+
T Consensus 91 ~~~~~~~~~-~~~~~l~~~~~~~p----------------~~-~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 91 IDAASNNGV-DDIREILDNVKYAP----------------SS-GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred eeccccCCH-HHHHHHHHHHhcCc----------------cc-CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 322211111 11222222221100 11 25568999998643 223333333322234556666
Q ss_pred ecCChh-Hhhhc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHH
Q 011568 278 TTRSCR-VCRSM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVA 344 (483)
Q Consensus 278 TtR~~~-v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 344 (483)
+|.+.. +.... .+..+++.+++.++...++...+....... .++.+..+++.++|.|..+....
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i---~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI---EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCChHHHHHHH
Confidence 664433 22211 124588999999999999988664433222 45778889999999987554443
No 59
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.50 E-value=4.5e-06 Score=77.74 Aligned_cols=199 Identities=15% Similarity=0.121 Sum_probs=122.2
Q ss_pred cccccchH-HHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCC---CCeEEEEEeCCCCCHHHHHH
Q 011568 141 NLAGKRTG-KIVKEIWEDLMG---DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNK---FNDVIWVTVSQPLDLIKLQT 213 (483)
Q Consensus 141 ~~vGr~~~-~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~ 213 (483)
.+||-... +.++.+.+.+.. ...+.+.|+|.+|.|||++++++.+......+. --.++.|.....++...+..
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~ 114 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYS 114 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHH
Confidence 36776533 344555454543 346789999999999999999999873211110 11478888899999999999
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc-----C----ccccccCCCCCCCCcEEEEecCChhH
Q 011568 214 EIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF-----P----LEEVGIPEPNEENGCKLVITTRSCRV 284 (483)
Q Consensus 214 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~-----~----~~~l~~~l~~~~~~s~ilvTtR~~~v 284 (483)
.|+.+++.+.........+.......++.-+--+||+|++++.- . ++.++ .+.+.-.=+-|.+-|+....
T Consensus 115 ~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK-~L~NeL~ipiV~vGt~~A~~ 193 (302)
T PF05621_consen 115 AILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK-FLGNELQIPIVGVGTREAYR 193 (302)
T ss_pred HHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH-HHhhccCCCeEEeccHHHHH
Confidence 99999999887667777767677777776577799999997531 1 11111 11121223445555554222
Q ss_pred hhhcC------CceEeccCCCh-HHHHHHHHHhhCCC--CCCCCCcchHHHHHHHHHcCCchHHH
Q 011568 285 CRSMK------CKQVEIELLSK-KEALNLFIDKVGSS--ILQVPTLNEGIINEVVEECGRLPLAI 340 (483)
Q Consensus 285 ~~~~~------~~~~~l~~L~~-~ea~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~~~G~Plai 340 (483)
+-... ..++.++.-.. ++...|+......- ..+.+-..++.+..|...++|+.=-+
T Consensus 194 al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 194 ALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 21111 12355555443 34555554432211 22222235788999999999986433
No 60
>PTZ00202 tuzin; Provisional
Probab=98.49 E-value=2.5e-06 Score=82.79 Aligned_cols=161 Identities=14% Similarity=0.115 Sum_probs=95.7
Q ss_pred cccccccccchHHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHH
Q 011568 137 STTRNLAGKRTGKIVKEIWEDLMG---DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQT 213 (483)
Q Consensus 137 ~~~~~~vGr~~~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 213 (483)
.++..|+||+ +++..+...|.+ +..+++.|+|++|+|||||++.+...+. +. .++++.. +..+++.
T Consensus 259 a~~~~FVGRe--aEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~-----~~-qL~vNpr---g~eElLr 327 (550)
T PTZ00202 259 AVIRQFVSRE--AEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG-----MP-AVFVDVR---GTEDTLR 327 (550)
T ss_pred CCccCCCCcH--HHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC-----ce-EEEECCC---CHHHHHH
Confidence 3455699999 778887777753 2346899999999999999999997721 11 3333333 6799999
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHh----c-CCeEEEEEeCCCCccCccccc---cCCCCCCCCcEEEEecCChhHh
Q 011568 214 EIATALKQSLPENEDKVSRAGRLLRMLK----A-KEKFVLILDDMWEAFPLEEVG---IPEPNEENGCKLVITTRSCRVC 285 (483)
Q Consensus 214 ~il~~l~~~~~~~~~~~~~~~~l~~~l~----~-~~~~LlVlDdv~~~~~~~~l~---~~l~~~~~~s~ilvTtR~~~v~ 285 (483)
.++.+||.+. .....++...+.+.+. . +++.+||+-== +-..+.... ..+.+...-|.|++----+.+.
T Consensus 328 ~LL~ALGV~p--~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyne~v~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 328 SVVKALGVPN--VEACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYNEVVALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHHHcCCCC--cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHHHHHHHHccchhheeeeeehHhhcc
Confidence 9999999732 2333344444444433 2 46666666421 111111110 0122223345666543322221
Q ss_pred hhc----CCceEeccCCChHHHHHHHHHhh
Q 011568 286 RSM----KCKQVEIELLSKKEALNLFIDKV 311 (483)
Q Consensus 286 ~~~----~~~~~~l~~L~~~ea~~Lf~~~~ 311 (483)
... .-.-|-+++++.++|..+-.+..
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 111 11347899999999998876653
No 61
>PRK09087 hypothetical protein; Validated
Probab=98.46 E-value=3e-06 Score=77.48 Aligned_cols=141 Identities=16% Similarity=0.136 Sum_probs=85.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK 241 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (483)
..+.+.|+|++|+|||+|++.+++. .. ..+++.. .+..+++ ..+.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~---~~-----~~~i~~~------~~~~~~~---------------------~~~~ 87 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREK---SD-----ALLIHPN------EIGSDAA---------------------NAAA 87 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh---cC-----CEEecHH------HcchHHH---------------------Hhhh
Confidence 3567999999999999999998876 11 1233321 1111111 1111
Q ss_pred cCCeEEEEEeCCCCcc-CccccccCCC-CCCCCcEEEEecCCh---------hHhhhcCC-ceEeccCCChHHHHHHHHH
Q 011568 242 AKEKFVLILDDMWEAF-PLEEVGIPEP-NEENGCKLVITTRSC---------RVCRSMKC-KQVEIELLSKKEALNLFID 309 (483)
Q Consensus 242 ~~~~~LlVlDdv~~~~-~~~~l~~~l~-~~~~~s~ilvTtR~~---------~v~~~~~~-~~~~l~~L~~~ea~~Lf~~ 309 (483)
. -+|++||++... .-..+...+. ....|..+|+|++.. .....+.. ..+++++++.++-.+++.+
T Consensus 88 ~---~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 88 E---GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred c---CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 1 278889996431 1111211111 113366788888742 22222222 4589999999999999998
Q ss_pred hhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHH
Q 011568 310 KVGSSILQVPTLNEGIINEVVEECGRLPLAIVTV 343 (483)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 343 (483)
.+....... .+++..-|++.+.|..-++..+
T Consensus 165 ~~~~~~~~l---~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 165 LFADRQLYV---DPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHcCCCC---CHHHHHHHHHHhhhhHHHHHHH
Confidence 875543333 5678899999999887766543
No 62
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=4.8e-06 Score=85.35 Aligned_cols=192 Identities=13% Similarity=0.148 Sum_probs=104.2
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
..++|++ ..++.+..++..+.. +.+.++|+.|+||||+|+.+++.+... + |... ..++....++.+...
T Consensus 16 ~dIIGQe--~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~--~-----~~~~-~~Cg~C~sCr~i~~~ 85 (605)
T PRK05896 16 KQIIGQE--LIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL--N-----PKDG-DCCNSCSVCESINTN 85 (605)
T ss_pred HHhcCcH--HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC--C-----CCCC-CCCcccHHHHHHHcC
Confidence 4589998 778888888876654 578999999999999999999885211 1 1110 011111122222111
Q ss_pred hcc-----cCCCCCCHHHHHHHHHHHHhc----CCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEE-ecCChhHhh
Q 011568 219 LKQ-----SLPENEDKVSRAGRLLRMLKA----KEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVI-TTRSCRVCR 286 (483)
Q Consensus 219 l~~-----~~~~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilv-TtR~~~v~~ 286 (483)
... ........ +..+.+...... .++-++|+|+++.. ..+..+...+-.....+.+|+ |+....+..
T Consensus 86 ~h~DiieIdaas~igV-d~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 86 QSVDIVELDAASNNGV-DEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCceEEeccccccCH-HHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 000 00000011 111222221111 13447999999743 223333322222223444444 444434432
Q ss_pred h--cCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchH-HHHHHHH
Q 011568 287 S--MKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPL-AIVTVAA 345 (483)
Q Consensus 287 ~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~~ 345 (483)
. ..+..+++.+++.++....+...+....... .++.+..+++.++|.+. |+..+-.
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I---s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI---EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2 1235689999999999988887664332222 45678889999999664 5555444
No 63
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=3.3e-06 Score=86.81 Aligned_cols=181 Identities=13% Similarity=0.187 Sum_probs=104.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCC------------------CCCCeEEEE
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKP------------------NKFNDVIWV 200 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 200 (483)
..++|.+ ..++.+..++..+.. ..+.++|+.|+||||+|+.+.+.+.... +.|...+++
T Consensus 16 ~divGq~--~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 16 SELVGQE--HVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred HHhcCcH--HHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 3589988 778888888887665 4678999999999999999988752110 112223333
Q ss_pred EeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--ccccccCCCCCCCCcEEEEe
Q 011568 201 TVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP--LEEVGIPEPNEENGCKLVIT 278 (483)
Q Consensus 201 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~~s~ilvT 278 (483)
..+....+. ..++++..+.... .. +++-++|+|+++.... .+.+...+-.....+.+|++
T Consensus 94 ~~~~~~~vd-~ir~l~~~~~~~p----------------~~-~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~ 155 (527)
T PRK14969 94 DAASNTQVD-AMRELLDNAQYAP----------------TR-GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILA 155 (527)
T ss_pred eccccCCHH-HHHHHHHHHhhCc----------------cc-CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEE
Confidence 322211111 1222222221100 01 2667999999985432 33332233222234455544
Q ss_pred c-CChhHhhhcC--CceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchH-HHHHH
Q 011568 279 T-RSCRVCRSMK--CKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPL-AIVTV 343 (483)
Q Consensus 279 t-R~~~v~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~ 343 (483)
| ....+..... +..+++.+++.++....+.+.+....... .++.+..|++.++|.+- ++..+
T Consensus 156 t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~---~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 156 TTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF---DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred eCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 4 4333321111 24589999999999988887654332222 45677889999999775 44444
No 64
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=5.3e-06 Score=89.04 Aligned_cols=183 Identities=12% Similarity=0.123 Sum_probs=105.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCC-C-------------------CCeEE
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKPN-K-------------------FNDVI 198 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~-------------------f~~~~ 198 (483)
..+||.+ ..++.|..++.++.+ ..+.++|+.|+||||+|+.+.+.+..... . +..++
T Consensus 15 ~eiiGqe--~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ 92 (824)
T PRK07764 15 AEVIGQE--HVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVT 92 (824)
T ss_pred HHhcCcH--HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEE
Confidence 3589988 778888888887765 56899999999999999999988632111 0 01122
Q ss_pred EEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEE
Q 011568 199 WVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLV 276 (483)
Q Consensus 199 wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~il 276 (483)
+++......+.++ +++...+. ..-..+ +.-++|||+++.. ...+.|...+-.-...+.+|
T Consensus 93 eidaas~~~Vd~i-R~l~~~~~----------------~~p~~~-~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fI 154 (824)
T PRK07764 93 EIDAASHGGVDDA-RELRERAF----------------FAPAES-RYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFI 154 (824)
T ss_pred EecccccCCHHHH-HHHHHHHH----------------hchhcC-CceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEE
Confidence 2221111111111 11111110 001122 5668899999853 23333333333223345555
Q ss_pred E-ecCChhHhhhcC--CceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchH-HHHHHHH
Q 011568 277 I-TTRSCRVCRSMK--CKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPL-AIVTVAA 345 (483)
Q Consensus 277 v-TtR~~~v~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~~ 345 (483)
+ |+....+..... +..|++..++.++...++.+.+....... ..+.+..|++.++|.+. ++..+-.
T Consensus 155 l~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i---d~eal~lLa~~sgGdlR~Al~eLEK 224 (824)
T PRK07764 155 FATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV---EPGVLPLVIRAGGGSVRDSLSVLDQ 224 (824)
T ss_pred EEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4 444444443222 35689999999999988887654332222 45667889999999884 3333333
No 65
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=6.8e-06 Score=81.41 Aligned_cols=178 Identities=8% Similarity=0.180 Sum_probs=101.8
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccC-----CCCCCe-EEEEEeCCCCCHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEK-----PNKFND-VIWVTVSQPLDLIKLQ 212 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~-----~~~f~~-~~wv~~~~~~~~~~~~ 212 (483)
..++|.+ ...+.+..++.++.. +.+.++|++|+||||+|+.+.+.+... ...|.. ++-++.....+. +..
T Consensus 17 ~~iig~~--~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i 93 (367)
T PRK14970 17 DDVVGQS--HITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DDI 93 (367)
T ss_pred HhcCCcH--HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HHH
Confidence 3588988 678888888877654 588999999999999999998874221 111221 111111111111 122
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEEEec-CChhHhhhc-
Q 011568 213 TEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLVITT-RSCRVCRSM- 288 (483)
Q Consensus 213 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ilvTt-R~~~v~~~~- 288 (483)
.+++..+... -..+ ++-++++|+++... .+..+...+......+.+|++| ....+....
T Consensus 94 ~~l~~~~~~~----------------p~~~-~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 94 RNLIDQVRIP----------------PQTG-KYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHHHhhc----------------cccC-CcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH
Confidence 2222222110 0112 45689999987432 2333322222222344555544 332322211
Q ss_pred -CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHH
Q 011568 289 -KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAI 340 (483)
Q Consensus 289 -~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 340 (483)
.+..+++.+++.++....+...+......- .++.+..+++.++|.+-.+
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i---~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKF---EDDALHIIAQKADGALRDA 206 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHHHH
Confidence 124589999999999998888665443322 4578888999999976533
No 66
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=1.6e-06 Score=86.48 Aligned_cols=195 Identities=11% Similarity=0.156 Sum_probs=107.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE-eCCCCCHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVT-VSQPLDLIKLQTEIAT 217 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~il~ 217 (483)
..++|.+ ..++.|..++.++.. ..+.++|+.|+||||+|..+++.+... .......|.. ...++..-...+.+..
T Consensus 16 ~eiiGq~--~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~-~~~~~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 16 ADITAQE--HITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ-RMIDDADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred hhccChH--HHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC-CCcCcccccccCCCCCCCCHHHHHHhc
Confidence 4589988 677888888887765 458899999999999999999885221 1111111110 0111111122222221
Q ss_pred HhcccC---CC-CCCHHHHHHHHHHHHhc----CCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEEEec-CChhHhh
Q 011568 218 ALKQSL---PE-NEDKVSRAGRLLRMLKA----KEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLVITT-RSCRVCR 286 (483)
Q Consensus 218 ~l~~~~---~~-~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ilvTt-R~~~v~~ 286 (483)
....+. .. .....+.+..+.+.+.. +++-++|+|+++... .++.+...+....+.+.+|++| +...+..
T Consensus 93 ~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 93 GTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHH
Confidence 100000 00 00111222223333321 256689999997543 3444433333333455555544 4433332
Q ss_pred hcC--CceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHH
Q 011568 287 SMK--CKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAI 340 (483)
Q Consensus 287 ~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 340 (483)
... +..+++.+++.++....+...+......- .++.+..|++.++|.+--+
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i---~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGISV---DADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 221 23589999999999988887664332222 5678899999999987544
No 67
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=6e-06 Score=85.06 Aligned_cols=194 Identities=12% Similarity=0.170 Sum_probs=108.1
Q ss_pred ccccccchHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDK-VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
..++|.+ ..++.|...+.++. ...+.++|+.|+||||+|+.+++.+... .... ...++.-...+.+...
T Consensus 16 ~dIiGQe--~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~-~~~~-------~~pCg~C~sC~~i~~g 85 (624)
T PRK14959 16 AEVAGQE--TVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCE-TAPT-------GEPCNTCEQCRKVTQG 85 (624)
T ss_pred HHhcCCH--HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcccc-CCCC-------CCCCcccHHHHHHhcC
Confidence 3588987 67777778787765 4778899999999999999999885211 0000 0011111111121111
Q ss_pred hcccC---C--CCCCHHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEEec-CChhHhh
Q 011568 219 LKQSL---P--ENEDKVSRAGRLLRMLK----AKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVITT-RSCRVCR 286 (483)
Q Consensus 219 l~~~~---~--~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilvTt-R~~~v~~ 286 (483)
..... . ..... +.++.+.+.+. .+++-++|||+++.. ...+.|...+-.......+|++| ....+..
T Consensus 86 ~hpDv~eId~a~~~~I-d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~ 164 (624)
T PRK14959 86 MHVDVVEIDGASNRGI-DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPV 164 (624)
T ss_pred CCCceEEEecccccCH-HHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhH
Confidence 00000 0 00011 11122222221 126679999999754 22333433332222344455544 4344332
Q ss_pred hc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCch-HHHHHHHHhh
Q 011568 287 SM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLP-LAIVTVAASM 347 (483)
Q Consensus 287 ~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai~~~~~~l 347 (483)
.. .+..+++.+++.++....+...+....... .++.+..|++.++|.+ .|+..+..++
T Consensus 165 TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i---d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 165 TIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY---DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 21 234689999999999999887664433222 5678889999999965 6777776554
No 68
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.41 E-value=1.7e-06 Score=79.38 Aligned_cols=190 Identities=14% Similarity=0.159 Sum_probs=113.1
Q ss_pred cccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEE-EEEeCCCCCHHHHHHHHHH
Q 011568 139 TRNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVI-WVTVSQPLDLIKLQTEIAT 217 (483)
Q Consensus 139 ~~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~il~ 217 (483)
-+.++|.+ ..+.-+.+.+.....+....+||+|.|||+-|..++..+.. .+.|++.+ =.++|...... +.++=+
T Consensus 35 ~de~~gQe--~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~-~~~~~~rvl~lnaSderGis-vvr~Ki- 109 (346)
T KOG0989|consen 35 FDELAGQE--HVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC-EQLFPCRVLELNASDERGIS-VVREKI- 109 (346)
T ss_pred HHhhcchH--HHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC-ccccccchhhhccccccccc-chhhhh-
Confidence 34578877 67778888888878899999999999999999999988532 35566543 33444322211 100000
Q ss_pred HhcccCCCCCCHHHHHHHHHHHHhc-CCe-EEEEEeCCCCc--cCccccccCCCCCCCCcEE-EEecCChhHhhhcC--C
Q 011568 218 ALKQSLPENEDKVSRAGRLLRMLKA-KEK-FVLILDDMWEA--FPLEEVGIPEPNEENGCKL-VITTRSCRVCRSMK--C 290 (483)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~l~~~l~~-~~~-~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~i-lvTtR~~~v~~~~~--~ 290 (483)
.+.........+.... -++ -.+|||+.+.. +.|..+...+-.....++. +||+--..+..... +
T Consensus 110 ---------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 110 ---------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred ---------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhH
Confidence 0111100000000000 123 58899999853 4566655444443444554 45543332222221 2
Q ss_pred ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCc-hHHHHHHHH
Q 011568 291 KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRL-PLAIVTVAA 345 (483)
Q Consensus 291 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~~~ 345 (483)
..+..++|..++...-++..+....... .++..+.|++.++|- --|+.++=+
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~---d~~al~~I~~~S~GdLR~Ait~Lqs 233 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDI---DDDALKLIAKISDGDLRRAITTLQS 233 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4588999999999998888876665555 677899999999985 444444433
No 69
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.37 E-value=3.6e-05 Score=70.18 Aligned_cols=172 Identities=17% Similarity=0.239 Sum_probs=97.9
Q ss_pred ccccccchHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLM-----GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTE 214 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 214 (483)
..|+|.+ +.++.+.-++. ++.+-=+.++||+|.||||||.-+++.+ ...+. ++-+.
T Consensus 26 ~efiGQ~--~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k----~tsGp---------- 86 (332)
T COG2255 26 DEFIGQE--KVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL---GVNLK----ITSGP---------- 86 (332)
T ss_pred HHhcChH--HHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeE----ecccc----------
Confidence 4599987 56666554442 2346679999999999999999999983 22221 11110
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc---------CccccccC-CCCCCCCcE----------
Q 011568 215 IATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF---------PLEEVGIP-EPNEENGCK---------- 274 (483)
Q Consensus 215 il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---------~~~~l~~~-l~~~~~~s~---------- 274 (483)
.-....+++. +...|. ..=+|++|.++... ..+++... ....+++++
T Consensus 87 ----------~leK~gDlaa-iLt~Le--~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 87 ----------ALEKPGDLAA-ILTNLE--EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ----------cccChhhHHH-HHhcCC--cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 0011111111 111222 44566778776321 01111100 011122322
Q ss_pred -EEEecCChhHhhhcCC---ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHh
Q 011568 275 -LVITTRSCRVCRSMKC---KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAAS 346 (483)
Q Consensus 275 -ilvTtR~~~v~~~~~~---~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 346 (483)
|=-|||.-.+...... -..+++.-+.+|-.++..+.+..-.... .++.+.+|+++..|-|.-..-+.+-
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i---~~~~a~eIA~rSRGTPRIAnRLLrR 226 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI---DEEAALEIARRSRGTPRIANRLLRR 226 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC---ChHHHHHHHHhccCCcHHHHHHHHH
Confidence 3368886544433322 2358888999999999998875444444 5678999999999999755444433
No 70
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.37 E-value=5.3e-06 Score=75.53 Aligned_cols=160 Identities=18% Similarity=0.213 Sum_probs=93.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
...+.|+|+.|+|||.|.+.+++.+.+..... .+++++ ..++...+...+... . ...+...+.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~-~v~y~~------~~~f~~~~~~~~~~~-----~----~~~~~~~~~- 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGK-RVVYLS------AEEFIREFADALRDG-----E----IEEFKDRLR- 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS--EEEEE------HHHHHHHHHHHHHTT-----S----HHHHHHHHC-
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccc-cceeec------HHHHHHHHHHHHHcc-----c----chhhhhhhh-
Confidence 45789999999999999999999853322222 356665 445666666655431 1 123444454
Q ss_pred CCeEEEEEeCCCCccC---cc-ccccCCC-CCCCCcEEEEecCChhH---------hhhcC-CceEeccCCChHHHHHHH
Q 011568 243 KEKFVLILDDMWEAFP---LE-EVGIPEP-NEENGCKLVITTRSCRV---------CRSMK-CKQVEIELLSKKEALNLF 307 (483)
Q Consensus 243 ~~~~LlVlDdv~~~~~---~~-~l~~~l~-~~~~~s~ilvTtR~~~v---------~~~~~-~~~~~l~~L~~~ea~~Lf 307 (483)
.-=+|+|||++.... |+ .+...+. ....|.++|+|+..... ...+. .-.+++.+.+.++..+++
T Consensus 97 -~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 97 -SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRIL 175 (219)
T ss_dssp -TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHH
T ss_pred -cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHH
Confidence 356899999975322 21 1111111 01346689999964321 12222 235899999999999999
Q ss_pred HHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHH
Q 011568 308 IDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTV 343 (483)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 343 (483)
.+.+....... .++++.-|++.+.+..-.+..+
T Consensus 176 ~~~a~~~~~~l---~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 176 QKKAKERGIEL---PEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHTT--S----HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHHhCCCC---cHHHHHHHHHhhcCCHHHHHHH
Confidence 98876554444 5677888888877665544433
No 71
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.36 E-value=1.5e-06 Score=83.83 Aligned_cols=91 Identities=15% Similarity=0.180 Sum_probs=60.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCC--CHHHHHHHHHHHhcccCCCCCCHH------HHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPL--DLIKLQTEIATALKQSLPENEDKV------SRAG 234 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~------~~~~ 234 (483)
..-.+|+|++|+|||||++.+++.+. . .+|+.++||.+.+.. .+.++++.+...+-.......... ....
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~-~-nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSIT-T-NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHH-h-hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999842 2 389999999998876 788888888643222221111111 1111
Q ss_pred HHHHHHhcCCeEEEEEeCCCC
Q 011568 235 RLLRMLKAKEKFVLILDDMWE 255 (483)
Q Consensus 235 ~l~~~l~~~~~~LlVlDdv~~ 255 (483)
........+++++|++|++..
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHH
Confidence 112222335999999999963
No 72
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.9e-05 Score=81.64 Aligned_cols=194 Identities=13% Similarity=0.141 Sum_probs=105.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
..++|.+ ..++.|..++.++.. ..+.++|+.|+||||+|+.+++.+..... .. ..+++.-...+.+...
T Consensus 13 ~eivGq~--~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-~~-------~~pCg~C~~C~~i~~~ 82 (584)
T PRK14952 13 AEVVGQE--HVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQG-PT-------ATPCGVCESCVALAPN 82 (584)
T ss_pred HHhcCcH--HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccC-CC-------CCcccccHHHHHhhcc
Confidence 4589988 788888898888765 45789999999999999999987521110 00 0011111111111110
Q ss_pred hccc-----CCC-CCCHHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEE-EecCChhHh
Q 011568 219 LKQS-----LPE-NEDKVSRAGRLLRMLK----AKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLV-ITTRSCRVC 285 (483)
Q Consensus 219 l~~~-----~~~-~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~il-vTtR~~~v~ 285 (483)
-+.. .+. .....+..+.+...+. .+++-++|+|+++.. ...+.+...+-.......+| +||....+.
T Consensus 83 ~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 83 GPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhH
Confidence 0000 000 0000111112221111 125668999999743 23333333332223344444 555544443
Q ss_pred hhc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchH-HHHHHHHh
Q 011568 286 RSM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPL-AIVTVAAS 346 (483)
Q Consensus 286 ~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~~~ 346 (483)
... .+..+++.+++.++..+.+.+.+....... .++.+..|++.++|.+- ++..+-.+
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i---~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV---DDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 322 235689999999999988887655433222 45677888999999774 44444443
No 73
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=1.3e-05 Score=83.13 Aligned_cols=194 Identities=10% Similarity=0.131 Sum_probs=107.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEeCCCCCHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFN-DVIWVTVSQPLDLIKLQTEIAT 217 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~ 217 (483)
..++|.+ ..++.|.+++..+.. ..+.++|+.|+||||+|+.+++.+......-. ...+ ..+....-.+.|..
T Consensus 24 ~dliGq~--~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~i~~ 97 (598)
T PRK09111 24 DDLIGQE--AMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQAIME 97 (598)
T ss_pred HHhcCcH--HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHHHhc
Confidence 4589988 788888888887764 47899999999999999999988521110000 0000 01111111122221
Q ss_pred Hhccc-----CCCCCCHHHHHHHHHHHHhc----CCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEEE-ecCChhHh
Q 011568 218 ALKQS-----LPENEDKVSRAGRLLRMLKA----KEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLVI-TTRSCRVC 285 (483)
Q Consensus 218 ~l~~~-----~~~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ilv-TtR~~~v~ 285 (483)
.-... ....... +.++.+...+.. .++-++|+|+++... ..+.+...+-.-...+.+|+ |+....+.
T Consensus 98 g~h~Dv~e~~a~s~~gv-d~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 98 GRHVDVLEMDAASHTGV-DDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred CCCCceEEecccccCCH-HHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 11000 0000111 112222222221 256689999997543 23333333322233455554 44443333
Q ss_pred hhc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHH
Q 011568 286 RSM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTV 343 (483)
Q Consensus 286 ~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 343 (483)
... .+..+.+.+++.++....+.+.+....... .++.+..|++.++|.+.-+...
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i---~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV---EDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 222 235689999999999999988765443333 4577889999999998655433
No 74
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=5e-06 Score=86.96 Aligned_cols=190 Identities=12% Similarity=0.170 Sum_probs=107.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
..++|.+ ..++.|..++..+.. ..+.++|+.|+||||+|+.+++.+..... .. -...++....++.+...
T Consensus 16 ~eiiGq~--~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~-~~------~~~~c~~c~~c~~i~~~ 86 (585)
T PRK14950 16 AELVGQE--HVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTN-DP------KGRPCGTCEMCRAIAEG 86 (585)
T ss_pred HHhcCCH--HHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCC-CC------CCCCCccCHHHHHHhcC
Confidence 4599988 778888888877654 56789999999999999999988421110 00 00112222333333322
Q ss_pred hcccC---C--CCCCHHHHHHHHHHHHhc----CCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEEecC-ChhHhh
Q 011568 219 LKQSL---P--ENEDKVSRAGRLLRMLKA----KEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVITTR-SCRVCR 286 (483)
Q Consensus 219 l~~~~---~--~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilvTtR-~~~v~~ 286 (483)
..... . ..... +....+.+.+.. .++-++|||+++.. ...+.+...+-.....+.+|++|. ...+..
T Consensus 87 ~~~d~~~i~~~~~~~v-d~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~ 165 (585)
T PRK14950 87 SAVDVIEMDAASHTSV-DDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPA 165 (585)
T ss_pred CCCeEEEEeccccCCH-HHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhH
Confidence 21100 0 01111 112222222221 25679999999743 223334333322233455555553 333322
Q ss_pred hc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHH
Q 011568 287 SM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVT 342 (483)
Q Consensus 287 ~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 342 (483)
.. .+..+.+.+++.++....+...+....... .++.+..|++.++|.+..+..
T Consensus 166 tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i---~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 166 TILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL---EPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 11 124588999999999988887765433222 457788999999998864443
No 75
>PRK05642 DNA replication initiation factor; Validated
Probab=98.32 E-value=9.9e-06 Score=74.63 Aligned_cols=150 Identities=15% Similarity=0.220 Sum_probs=89.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
...+.|+|+.|+|||.|++.+++.+.. .-..++|++... +... ...+.+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~---~~~~v~y~~~~~------~~~~------------------~~~~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQ---RGEPAVYLPLAE------LLDR------------------GPELLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEeeHHH------HHhh------------------hHHHHHhhhh
Confidence 367899999999999999999987321 123467777432 1110 0123334443
Q ss_pred CCeEEEEEeCCCCc---cCccc-cccCCCC-CCCCcEEEEecCChhH-hh--------hcCC-ceEeccCCChHHHHHHH
Q 011568 243 KEKFVLILDDMWEA---FPLEE-VGIPEPN-EENGCKLVITTRSCRV-CR--------SMKC-KQVEIELLSKKEALNLF 307 (483)
Q Consensus 243 ~~~~LlVlDdv~~~---~~~~~-l~~~l~~-~~~~s~ilvTtR~~~v-~~--------~~~~-~~~~l~~L~~~ea~~Lf 307 (483)
- =+||+||+... ..|.. +...+.. ...|..+|+||+...- .. .+.. ..+++.+++.++-..++
T Consensus 98 -~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 98 -Y-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred -C-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 2 36889999632 23322 2222211 1345678888874322 11 1111 34789999999999999
Q ss_pred HHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHH
Q 011568 308 IDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVA 344 (483)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 344 (483)
+.++....... .++...-|++.+.|..-.+..+-
T Consensus 176 ~~ka~~~~~~l---~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 176 QLRASRRGLHL---TDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHHHHH
Confidence 86654332222 46788888888888765554443
No 76
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.31 E-value=6.4e-06 Score=88.65 Aligned_cols=176 Identities=14% Similarity=0.206 Sum_probs=98.2
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccC--CCCC-CeEEE-EEeCCCCCHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEK--PNKF-NDVIW-VTVSQPLDLIKLQTEI 215 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~f-~~~~w-v~~~~~~~~~~~~~~i 215 (483)
++++||+ ++++.+++.|......-+.++|++|+|||++|+.+++.+... ...+ ...+| ++++ . +
T Consensus 182 ~~~igr~--~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~------~----l 249 (731)
T TIGR02639 182 DPLIGRE--DELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG------S----L 249 (731)
T ss_pred CcccCcH--HHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH------H----H
Confidence 3699999 899999998887766677899999999999999999984221 1111 22333 2211 1 1
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc----------Cccc-cccCCCCCCCC-cEEEEecCChh
Q 011568 216 ATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF----------PLEE-VGIPEPNEENG-CKLVITTRSCR 283 (483)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~----------~~~~-l~~~l~~~~~~-s~ilvTtR~~~ 283 (483)
+.. .....+.+.....+.+.+...++.+|++|+++... +... +...+ ..| -++|-+|....
T Consensus 250 ~a~----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~IgaTt~~e 322 (731)
T TIGR02639 250 LAG----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGSTTYEE 322 (731)
T ss_pred hhh----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEecCHHH
Confidence 100 00112334445555555544368999999997321 1111 22222 223 34444444322
Q ss_pred H--------hhhcCCceEeccCCChHHHHHHHHHhhCCC-CCCCCCcchHHHHHHHHHcC
Q 011568 284 V--------CRSMKCKQVEIELLSKKEALNLFIDKVGSS-ILQVPTLNEGIINEVVEECG 334 (483)
Q Consensus 284 v--------~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~-~~~~~~~~~~~~~~i~~~~~ 334 (483)
. +..-....+.+++++.++..+++....... ....-...++....++..++
T Consensus 323 ~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ 382 (731)
T TIGR02639 323 YKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSA 382 (731)
T ss_pred HHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhh
Confidence 1 111122468999999999999998654321 00011124455556665553
No 77
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=3.2e-05 Score=78.84 Aligned_cols=181 Identities=10% Similarity=0.101 Sum_probs=104.2
Q ss_pred ccccccchHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHhhhccCC-CC----------------C-CeEEEE
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVS-KIGVWGMGGIGKTTIMSNINNKLHEKP-NK----------------F-NDVIWV 200 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~----------------f-~~~~wv 200 (483)
..++|.+ ...+.+..++.++..+ .+.++|+.|+||||+|+.+.+.+.... .. + ..++.+
T Consensus 14 deiiGqe--~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el 91 (535)
T PRK08451 14 DELIGQE--SVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM 91 (535)
T ss_pred HHccCcH--HHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence 4589988 6788888888777654 678999999999999999988742111 01 0 112222
Q ss_pred EeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEEEe
Q 011568 201 TVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLVIT 278 (483)
Q Consensus 201 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ilvT 278 (483)
+......+.+ .++++....... .. +++-++|+|+++... ..+.+...+-.....+.+|++
T Consensus 92 daas~~gId~-IRelie~~~~~P----------------~~-~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ 153 (535)
T PRK08451 92 DAASNRGIDD-IRELIEQTKYKP----------------SM-ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILA 153 (535)
T ss_pred ccccccCHHH-HHHHHHHHhhCc----------------cc-CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEE
Confidence 2211111211 122222111000 01 256689999997542 223332222222334556655
Q ss_pred cCCh-hHhhh--cCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHH
Q 011568 279 TRSC-RVCRS--MKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTV 343 (483)
Q Consensus 279 tR~~-~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 343 (483)
|.+. .+... ..+..+++.+++.++....+.+.+....... .++.+..|++.++|.+.-+...
T Consensus 154 ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i---~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 154 TTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY---EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHH
Confidence 5442 22111 1235689999999999999887665433332 4678889999999988544433
No 78
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.30 E-value=2.8e-06 Score=83.92 Aligned_cols=170 Identities=13% Similarity=0.220 Sum_probs=94.6
Q ss_pred ccccccchHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCC
Q 011568 140 RNLAGKRTGKIVKEIWEDLM----G---------DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPL 206 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 206 (483)
..+.|.+ +.+++|.+.+. . ...+-+.|+|++|+|||++|+.+++. ....| +.+..
T Consensus 122 ~di~Gl~--~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~---l~~~~-----~~v~~-- 189 (364)
T TIGR01242 122 EDIGGLE--EQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE---TNATF-----IRVVG-- 189 (364)
T ss_pred HHhCChH--HHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh---CCCCE-----Eecch--
Confidence 4578887 66666666542 1 12456899999999999999999998 33332 22211
Q ss_pred CHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------------ccccccCCC--C
Q 011568 207 DLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP----------------LEEVGIPEP--N 268 (483)
Q Consensus 207 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~l~--~ 268 (483)
.++.... ++ ........+.+......+.+|+||+++.... +..+...+. .
T Consensus 190 --~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 --SELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred --HHHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111111 00 1122233334333334788999999974310 111111111 1
Q ss_pred CCCCcEEEEecCChhHhh-hc----CC-ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCch
Q 011568 269 EENGCKLVITTRSCRVCR-SM----KC-KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLP 337 (483)
Q Consensus 269 ~~~~s~ilvTtR~~~v~~-~~----~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 337 (483)
...+..||.||....... .. .. ..+.++..+.++..++|..+........ ......+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~----~~~~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE----DVDLEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc----cCCHHHHHHHcCCCC
Confidence 123567777776432211 11 11 3488999999999999998775542221 112566777887753
No 79
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=2.3e-05 Score=82.11 Aligned_cols=178 Identities=13% Similarity=0.148 Sum_probs=103.0
Q ss_pred ccccccchHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC---------------CeEEEEEeC
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDK-VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKF---------------NDVIWVTVS 203 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f---------------~~~~wv~~~ 203 (483)
..++|.+ ..++.+..++..+. .+.+.++|+.|+||||+|+.++..+....... ..++++...
T Consensus 18 ~dIiGQe--~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaa 95 (725)
T PRK07133 18 DDIVGQD--HIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAA 95 (725)
T ss_pred HHhcCcH--HHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEecc
Confidence 4588988 67888888887765 45678999999999999999988752211100 001111110
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc----CCeEEEEEeCCCCc--cCccccccCCCCCCCCcE-EE
Q 011568 204 QPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA----KEKFVLILDDMWEA--FPLEEVGIPEPNEENGCK-LV 276 (483)
Q Consensus 204 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~-il 276 (483)
...+ .+.++.+.+.+.. +++-++|+|+++.. ..+..+...+-.....+. |+
T Consensus 96 sn~~----------------------vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifIL 153 (725)
T PRK07133 96 SNNG----------------------VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFIL 153 (725)
T ss_pred ccCC----------------------HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEE
Confidence 0011 1112223322221 35669999999743 223333222221122334 45
Q ss_pred EecCChhHhhhc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchH-HHHHHH
Q 011568 277 ITTRSCRVCRSM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPL-AIVTVA 344 (483)
Q Consensus 277 vTtR~~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~ 344 (483)
+|+....+.... .+..+++.+++.++....+...+....... ..+.+..|++.++|.+. |+..+-
T Consensus 154 aTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i---d~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 154 ATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY---EKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred EcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 555554443321 235689999999999988887654332222 35668889999999764 444443
No 80
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=3.8e-05 Score=78.12 Aligned_cols=178 Identities=13% Similarity=0.137 Sum_probs=103.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCC------------------CCCeEEEE
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKPN------------------KFNDVIWV 200 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv 200 (483)
..++|.+ .....+..++..+.. ..+.++|+.|+||||+|+.++..+..... .|...+++
T Consensus 16 ~diiGq~--~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 16 KEVIGQE--IVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred HHccChH--HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 3588988 778888888877654 56788999999999999999887421100 11222233
Q ss_pred EeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc----CCeEEEEEeCCCCcc--CccccccCCCCCCCCcE
Q 011568 201 TVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA----KEKFVLILDDMWEAF--PLEEVGIPEPNEENGCK 274 (483)
Q Consensus 201 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ 274 (483)
..+....+ +..+.+...... +++-++|+|+++... ..+.+...+........
T Consensus 94 daas~~gv----------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 94 DAASNRGI----------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred eCccCCCH----------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 22111111 111122222211 266799999997432 23333222322223444
Q ss_pred EEE-ecCChhHhhh--cCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHH
Q 011568 275 LVI-TTRSCRVCRS--MKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVA 344 (483)
Q Consensus 275 ilv-TtR~~~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 344 (483)
+|+ ||+...+... ..+..+.+.+++.++....+...+....... .++.+..|+..++|.+..+....
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i---d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY---EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 444 4444333221 1234689999999999988888664433222 45678889999999776444333
No 81
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.28 E-value=2.2e-05 Score=79.29 Aligned_cols=165 Identities=16% Similarity=0.163 Sum_probs=101.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
...+.|+|..|+|||+|++.+++.+...... ..+++++ ..++...+...++... .....+.+.+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~-~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSD-LKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCC-CeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-
Confidence 3568999999999999999999974221111 2345554 3467777776665310 22233444444
Q ss_pred CCeEEEEEeCCCCcc---C-ccccccCCCC-CCCCcEEEEecCChh-H--------hhhcCC-ceEeccCCChHHHHHHH
Q 011568 243 KEKFVLILDDMWEAF---P-LEEVGIPEPN-EENGCKLVITTRSCR-V--------CRSMKC-KQVEIELLSKKEALNLF 307 (483)
Q Consensus 243 ~~~~LlVlDdv~~~~---~-~~~l~~~l~~-~~~~s~ilvTtR~~~-v--------~~~~~~-~~~~l~~L~~~ea~~Lf 307 (483)
..-+|||||+.... . .+.+...+.. ...+..||+|+.... . ...+.. -.+.+.+++.++-.+++
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 35589999997432 1 1222222211 123446888875422 1 222222 34789999999999999
Q ss_pred HHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHH
Q 011568 308 IDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVA 344 (483)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 344 (483)
.+.+...... ....++...-|++.++|.|-.+.-+.
T Consensus 285 ~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 285 KKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 9887543211 12257889999999999998776555
No 82
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=2.9e-05 Score=81.27 Aligned_cols=177 Identities=9% Similarity=0.137 Sum_probs=104.6
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccC--------------------CCCCCeEE
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEK--------------------PNKFNDVI 198 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~~f~~~~ 198 (483)
..++|.+ ..++.|..++..+.. ..+.++|+.|+||||+|+.+...+... ..+|+ +.
T Consensus 17 ~~viGq~--~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~ 93 (614)
T PRK14971 17 ESVVGQE--ALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IH 93 (614)
T ss_pred HHhcCcH--HHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eE
Confidence 4589988 788889999887765 568899999999999999988874211 01222 22
Q ss_pred EEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEE
Q 011568 199 WVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLV 276 (483)
Q Consensus 199 wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~il 276 (483)
.+......++. ..++++.++.... .. +++-++|+|+++... ..+.+...+-.-...+.+|
T Consensus 94 ~ld~~~~~~vd-~Ir~li~~~~~~P----------------~~-~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifI 155 (614)
T PRK14971 94 ELDAASNNSVD-DIRNLIEQVRIPP----------------QI-GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFI 155 (614)
T ss_pred EecccccCCHH-HHHHHHHHHhhCc----------------cc-CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEE
Confidence 22222111111 1222222221100 11 255688999987542 2333433332223345554
Q ss_pred E-ecCChhHhhhc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHH
Q 011568 277 I-TTRSCRVCRSM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAI 340 (483)
Q Consensus 277 v-TtR~~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 340 (483)
+ ||....+.... .+..+++.+++.++....+.+.+....... .++.+..|++.++|..--+
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i---~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA---EPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 4 54544443322 235689999999999999887665443332 4567889999999976533
No 83
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.24 E-value=1.6e-05 Score=86.32 Aligned_cols=179 Identities=12% Similarity=0.181 Sum_probs=100.8
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccC--CCC-CCeEE-EEEeCCCCCHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEK--PNK-FNDVI-WVTVSQPLDLIKLQTEI 215 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~-f~~~~-wv~~~~~~~~~~~~~~i 215 (483)
++++||+ +++.+++..|......-+.++|++|+||||+|+.+++.+... ... ....+ .+.++.-
T Consensus 187 d~~iGr~--~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l---------- 254 (852)
T TIGR03345 187 DPVLGRD--DEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL---------- 254 (852)
T ss_pred CcccCCH--HHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh----------
Confidence 4689999 889999999988777777899999999999999999884211 111 11223 2333210
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHh-cCCeEEEEEeCCCCcc-------Ccc--ccccCCCCCCCC-cEEEEecCChhH
Q 011568 216 ATALKQSLPENEDKVSRAGRLLRMLK-AKEKFVLILDDMWEAF-------PLE--EVGIPEPNEENG-CKLVITTRSCRV 284 (483)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~~LlVlDdv~~~~-------~~~--~l~~~l~~~~~~-s~ilvTtR~~~v 284 (483)
..........+.....+...+. .+.+.+|++|+++... ..+ .+..+. ...| -++|-||.....
T Consensus 255 ----~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~--l~~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 255 ----QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPA--LARGELRTIAATTWAEY 328 (852)
T ss_pred ----hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHH--hhCCCeEEEEecCHHHH
Confidence 0000001122233333333332 2368999999997432 111 121122 2233 455555554322
Q ss_pred hh--------hcCCceEeccCCChHHHHHHHHHhhCCC-CCCCCCcchHHHHHHHHHcCCc
Q 011568 285 CR--------SMKCKQVEIELLSKKEALNLFIDKVGSS-ILQVPTLNEGIINEVVEECGRL 336 (483)
Q Consensus 285 ~~--------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~-~~~~~~~~~~~~~~i~~~~~G~ 336 (483)
.. .-....+.+++++.+++.+++......- ....-...++....+++.+.+.
T Consensus 329 ~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 329 KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 11 1122469999999999999975443221 1111122456777777777654
No 84
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=4e-05 Score=79.81 Aligned_cols=197 Identities=13% Similarity=0.176 Sum_probs=106.6
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE-eCCCCCHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVT-VSQPLDLIKLQTEIAT 217 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~il~ 217 (483)
..++|.+ ..+..|..++.++.. ..+.++|+.|+||||+|+.+++.+... .......|.. ....+..-...+.+..
T Consensus 16 ~eivGQe--~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~-~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 16 ADITAQE--HITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ-RMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred HHhcCcH--HHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC-CcCCccccccccCCCCccCHHHHHHhc
Confidence 4589988 778888888877665 558899999999999999999885221 1111011111 0111111222222211
Q ss_pred Hhccc---CC--CCCCHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEE-EecCChhHh
Q 011568 218 ALKQS---LP--ENEDKVSRAGRLLRMLK----AKEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLV-ITTRSCRVC 285 (483)
Q Consensus 218 ~l~~~---~~--~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~il-vTtR~~~v~ 285 (483)
.-..+ .+ .....++ +..+.+.+. .+++-++|+|+++... ..+.+...+-.-...+.+| +|++...+.
T Consensus 93 g~~~n~~~~d~~s~~~vd~-Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl 171 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDD-IRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (620)
T ss_pred cCCCCeEEecccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 10000 00 0111122 222333221 1256689999987542 2333333332222344444 454444443
Q ss_pred hhc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchH-HHHHH
Q 011568 286 RSM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPL-AIVTV 343 (483)
Q Consensus 286 ~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~ 343 (483)
... .+..+++.+++.++....+.+.+....... .++.+..|++.++|..- ++..+
T Consensus 172 ~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I---~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 172 ATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI---DADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred HHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHH
Confidence 322 235689999999999888877654332222 46778899999999654 44433
No 85
>PRK06620 hypothetical protein; Validated
Probab=98.22 E-value=1.7e-05 Score=71.79 Aligned_cols=133 Identities=14% Similarity=0.062 Sum_probs=78.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAK 243 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 243 (483)
+.+.|+|++|+|||+|++.+++. ... .++. .... . . +.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~---~~~-----~~~~--~~~~--------------------~-~-------~~~~-- 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL---SNA-----YIIK--DIFF--------------------N-E-------EILE-- 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc---cCC-----EEcc--hhhh--------------------c-h-------hHHh--
Confidence 66999999999999999998776 111 1211 0000 0 0 1112
Q ss_pred CeEEEEEeCCCCccCccccccCCC-CCCCCcEEEEecCChhH-------hhhcCC-ceEeccCCChHHHHHHHHHhhCCC
Q 011568 244 EKFVLILDDMWEAFPLEEVGIPEP-NEENGCKLVITTRSCRV-------CRSMKC-KQVEIELLSKKEALNLFIDKVGSS 314 (483)
Q Consensus 244 ~~~LlVlDdv~~~~~~~~l~~~l~-~~~~~s~ilvTtR~~~v-------~~~~~~-~~~~l~~L~~~ea~~Lf~~~~~~~ 314 (483)
..-+|++||++...+ ..+...+. ....|..+|+|++.... ...+.. -.+++++++.++...++.+.+...
T Consensus 85 ~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 85 KYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred cCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 345788999974321 11111110 01346678888874322 122222 358999999999888888776533
Q ss_pred CCCCCCcchHHHHHHHHHcCCchHHH
Q 011568 315 ILQVPTLNEGIINEVVEECGRLPLAI 340 (483)
Q Consensus 315 ~~~~~~~~~~~~~~i~~~~~G~Plai 340 (483)
...- .+++..-|++.+.|.--.+
T Consensus 164 ~l~l---~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 164 SVTI---SRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred CCCC---CHHHHHHHHHHccCCHHHH
Confidence 2222 4677888888887765444
No 86
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=3.3e-05 Score=78.07 Aligned_cols=181 Identities=10% Similarity=0.137 Sum_probs=103.2
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCC--------------------CCCeEE
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKPN--------------------KFNDVI 198 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--------------------~f~~~~ 198 (483)
..++|.+ ..+..+..++..+.. ..+.++|+.|+||||+|+.+++.+..... +++ .+
T Consensus 17 ~diiGq~--~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~ 93 (451)
T PRK06305 17 SEILGQD--AVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VL 93 (451)
T ss_pred HHhcCcH--HHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eE
Confidence 4589988 778888888877765 66889999999999999999887522100 111 11
Q ss_pred EEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEE
Q 011568 199 WVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLV 276 (483)
Q Consensus 199 wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~il 276 (483)
++.......+.+ .+++.+.+.. .-..+ ++-++|+|+++... ..+.+...+-.......+|
T Consensus 94 ~i~g~~~~gid~-ir~i~~~l~~----------------~~~~~-~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~I 155 (451)
T PRK06305 94 EIDGASHRGIED-IRQINETVLF----------------TPSKS-RYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFF 155 (451)
T ss_pred EeeccccCCHHH-HHHHHHHHHh----------------hhhcC-CCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEE
Confidence 111111111111 1111111110 00113 67789999987432 2233333332223355555
Q ss_pred Eec-CChhHhhhc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchH-HHHHHH
Q 011568 277 ITT-RSCRVCRSM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPL-AIVTVA 344 (483)
Q Consensus 277 vTt-R~~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~ 344 (483)
++| +...+.... .+..+++.+++.++....+...+....... .++.+..|++.++|.+. ++..+-
T Consensus 156 l~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i---~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 156 LATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET---SREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred EEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 555 333332211 234589999999999988887654332222 45678899999999764 444443
No 87
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.21 E-value=3.6e-06 Score=81.62 Aligned_cols=92 Identities=15% Similarity=0.172 Sum_probs=63.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCC--CCHHHHHHHHHHHhcccCCCCCCHH------HHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQP--LDLIKLQTEIATALKQSLPENEDKV------SRA 233 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~------~~~ 233 (483)
....++|+|++|+|||||++.+++.+. ..+|+..+|+.+... .++.++++.++..+-.......... ...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 346799999999999999999999842 237999999998754 7899999999654433221111111 111
Q ss_pred HHHHHHHhcCCeEEEEEeCCCC
Q 011568 234 GRLLRMLKAKEKFVLILDDMWE 255 (483)
Q Consensus 234 ~~l~~~l~~~~~~LlVlDdv~~ 255 (483)
.........+++++|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 2222333336999999999964
No 88
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=6.4e-05 Score=77.78 Aligned_cols=186 Identities=11% Similarity=0.122 Sum_probs=103.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCC--CCCCeEEEEEeCCCCCHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKP--NKFNDVIWVTVSQPLDLIKLQTEIA 216 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~il 216 (483)
..++|.+ ..+..+..++.++.. +.+.++|+.|+||||+|+.+++.+.... ..++| ..-...+.+.
T Consensus 16 ~diiGqe--~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC----------~~C~~C~~i~ 83 (563)
T PRK06647 16 NSLEGQD--FVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPC----------GECSSCKSID 83 (563)
T ss_pred HHccCcH--HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCC----------ccchHHHHHH
Confidence 4589988 778889888887654 5688999999999999999998852210 00110 0001111111
Q ss_pred HHhccc---CCC--CCCHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEEEec-CChhH
Q 011568 217 TALKQS---LPE--NEDKVSRAGRLLRMLK----AKEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLVITT-RSCRV 284 (483)
Q Consensus 217 ~~l~~~---~~~--~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ilvTt-R~~~v 284 (483)
..-... ... ....++ +..+.+.+. .+++-++|+|+++... .++.+...+-.....+.+|++| ....+
T Consensus 84 ~~~~~dv~~idgas~~~vdd-Ir~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQD-VRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred cCCCCCeEEecCcccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 100000 000 011111 112221111 1256689999997442 2344433333223445555555 33333
Q ss_pred hhhc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHH
Q 011568 285 CRSM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIV 341 (483)
Q Consensus 285 ~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 341 (483)
.... .+..+++.+++.++....+...+....... .++.+..|++.++|.+..+.
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i---d~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY---EDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 2221 234589999999999988887764443333 46778889999999885443
No 89
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.20 E-value=4.3e-05 Score=76.72 Aligned_cols=158 Identities=19% Similarity=0.253 Sum_probs=94.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
...+.|+|++|+|||+|++.+++.+.+. ..=..+++++. .++...+...+... . ...+.+.+..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~-~~~~~v~yi~~------~~~~~~~~~~~~~~-----~----~~~~~~~~~~ 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILEN-NPNAKVVYVSS------EKFTNDFVNALRNN-----K----MEEFKEKYRS 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCCcEEEEEH------HHHHHHHHHHHHcC-----C----HHHHHHHHHh
Confidence 3578999999999999999999984321 11123566653 34455555555321 1 2233344433
Q ss_pred CCeEEEEEeCCCCccCc----cccccCCCC-CCCCcEEEEecCChh---------HhhhcCC-ceEeccCCChHHHHHHH
Q 011568 243 KEKFVLILDDMWEAFPL----EEVGIPEPN-EENGCKLVITTRSCR---------VCRSMKC-KQVEIELLSKKEALNLF 307 (483)
Q Consensus 243 ~~~~LlVlDdv~~~~~~----~~l~~~l~~-~~~~s~ilvTtR~~~---------v~~~~~~-~~~~l~~L~~~ea~~Lf 307 (483)
.-+|+|||++....- +.+...+.. ...+..+|+||.... +...+.. ..+.+++.+.++-..++
T Consensus 200 --~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 200 --VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred --CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 448999999743211 112111111 123455777775421 1112222 34899999999999999
Q ss_pred HHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHH
Q 011568 308 IDKVGSSILQVPTLNEGIINEVVEECGRLPLAIV 341 (483)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 341 (483)
.+.+....... .++....|++.+.|.+-.+.
T Consensus 278 ~~~~~~~~~~l---~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 278 QKKAEEEGLEL---PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHH
Confidence 98876543333 56788899999998876443
No 90
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.19 E-value=1.5e-05 Score=86.95 Aligned_cols=179 Identities=12% Similarity=0.224 Sum_probs=98.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccC--CCCC-CeEEEEEeCCCCCHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEK--PNKF-NDVIWVTVSQPLDLIKLQTEIA 216 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~f-~~~~wv~~~~~~~~~~~~~~il 216 (483)
.+++||+ ++++.+++.|......-+.++|++|+|||++|+.++..+... .... ...+|. + +...+
T Consensus 179 ~~~igr~--~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l----- 246 (821)
T CHL00095 179 DPVIGRE--KEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL----- 246 (821)
T ss_pred CCCCCcH--HHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH-----
Confidence 3589999 899999999987766677899999999999999999884211 1111 223442 1 11111
Q ss_pred HHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc---------CccccccCCCCCCCCcEEEEecCChhHhh-
Q 011568 217 TALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF---------PLEEVGIPEPNEENGCKLVITTRSCRVCR- 286 (483)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---------~~~~l~~~l~~~~~~s~ilvTtR~~~v~~- 286 (483)
+... ......++....+.+.+...++.+|++|+++... +...+..+... ...-++|.+|.......
T Consensus 247 --~ag~-~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-rg~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 247 --LAGT-KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-RGELQCIGATTLDEYRKH 322 (821)
T ss_pred --hccC-CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-CCCcEEEEeCCHHHHHHH
Confidence 1111 1112334445555555544478999999996321 11112111111 11234555555443311
Q ss_pred -------hcCCceEeccCCChHHHHHHHHHhhCC--CCCCCCCcchHHHHHHHHHcCC
Q 011568 287 -------SMKCKQVEIELLSKKEALNLFIDKVGS--SILQVPTLNEGIINEVVEECGR 335 (483)
Q Consensus 287 -------~~~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~~~G 335 (483)
......+.+...+.++...++...... ..... ...++....+++.++|
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v-~i~deal~~i~~ls~~ 379 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNL-SISDKALEAAAKLSDQ 379 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhc
Confidence 112245788889999988887653211 10000 0134566666666654
No 91
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=0.00013 Score=70.14 Aligned_cols=193 Identities=13% Similarity=0.167 Sum_probs=107.7
Q ss_pred cccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccC------------CCCCCeEEEEEeCCCCC
Q 011568 141 NLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEK------------PNKFNDVIWVTVSQPLD 207 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~------------~~~f~~~~wv~~~~~~~ 207 (483)
.++|.+ ..++.+...+.++.. +...++|+.|+||+++|..+++.+... ...++...|+.-.....
T Consensus 5 ~iiGq~--~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 5 NLIGQP--LAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HhCCHH--HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 478888 778888888887764 889999999999999999998875221 12334456654211000
Q ss_pred HHHHHHHHHHHhcc--cCCCCCCHHHHHHHHHHHHhc----CCeEEEEEeCCCCccC--ccccccCCCCCCCCcEEEEec
Q 011568 208 LIKLQTEIATALKQ--SLPENEDKVSRAGRLLRMLKA----KEKFVLILDDMWEAFP--LEEVGIPEPNEENGCKLVITT 279 (483)
Q Consensus 208 ~~~~~~~il~~l~~--~~~~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~~s~ilvTt 279 (483)
-..+-..-+...+. ....... .+..+.+.+.+.. +++-++|+|+++.... .+.+...+-.-....-|++|+
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~-id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~ 161 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIR-LEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAP 161 (314)
T ss_pred ccccchhhhhhccccccccccCc-HHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEEC
Confidence 00000000111110 0001111 1223445444442 3677999999875422 222222221111233445555
Q ss_pred CChhHhhhc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHH
Q 011568 280 RSCRVCRSM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVT 342 (483)
Q Consensus 280 R~~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 342 (483)
....+.... .+..+++.+++.++..+.+........ .......++..++|.|..+..
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHH
Confidence 544443322 235689999999999999988643211 111246789999999976544
No 92
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.17 E-value=1e-05 Score=75.98 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=68.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
..-+.++|++|+||||+|+.+++.+.... ......++.++.. ++. ...- ... .. .+.+.+..
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~-~~~~~~~v~~~~~----~l~----~~~~-----g~~-~~---~~~~~~~~ 103 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMN-VLSKGHLIEVERA----DLV----GEYI-----GHT-AQ---KTREVIKK 103 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcC-cccCCceEEecHH----Hhh----hhhc-----cch-HH---HHHHHHHh
Confidence 45688999999999999999988742221 1111223333221 111 1100 011 11 12222222
Q ss_pred CCeEEEEEeCCCCcc----------CccccccCCCCCCCCcEEEEecCChhH----------hhhcCCceEeccCCChHH
Q 011568 243 KEKFVLILDDMWEAF----------PLEEVGIPEPNEENGCKLVITTRSCRV----------CRSMKCKQVEIELLSKKE 302 (483)
Q Consensus 243 ~~~~LlVlDdv~~~~----------~~~~l~~~l~~~~~~s~ilvTtR~~~v----------~~~~~~~~~~l~~L~~~e 302 (483)
....+|+||+++... ..+.+...+........+++++..... ...+ ...+.+++++.++
T Consensus 104 a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf-~~~i~f~~~~~~e 182 (261)
T TIGR02881 104 ALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF-PISIDFPDYTVEE 182 (261)
T ss_pred ccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc-ceEEEECCCCHHH
Confidence 134589999997421 122222222222233345555543222 1111 1347899999999
Q ss_pred HHHHHHHhhCC
Q 011568 303 ALNLFIDKVGS 313 (483)
Q Consensus 303 a~~Lf~~~~~~ 313 (483)
..+++.+.+..
T Consensus 183 l~~Il~~~~~~ 193 (261)
T TIGR02881 183 LMEIAERMVKE 193 (261)
T ss_pred HHHHHHHHHHH
Confidence 99999877643
No 93
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=9.4e-05 Score=72.00 Aligned_cols=191 Identities=13% Similarity=0.167 Sum_probs=117.8
Q ss_pred cccccccchHHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHH
Q 011568 139 TRNLAGKRTGKIVKEIWEDLMG----DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTE 214 (483)
Q Consensus 139 ~~~~vGr~~~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 214 (483)
+..++||+ .++..+..|+.. +...-+-|.|.+|.|||.+...++.++...... ..++++++..-.....++..
T Consensus 149 p~~l~gRe--~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 149 PGTLKGRE--LEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCccchH--HHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHH
Confidence 45699999 788888777754 456889999999999999999999884322222 24678888776677888888
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHhcC-CeEEEEEeCCCCc--cCcccc--ccCCCCCCCCcEEEEecCCh------h
Q 011568 215 IATALKQSLPENEDKVSRAGRLLRMLKAK-EKFVLILDDMWEA--FPLEEV--GIPEPNEENGCKLVITTRSC------R 283 (483)
Q Consensus 215 il~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~LlVlDdv~~~--~~~~~l--~~~l~~~~~~s~ilvTtR~~------~ 283 (483)
|...+-..........+....+.+..... ..+|+|+|.++.. ..-..+ ...++ .-+++++|+.---. .
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp-~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWP-KLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcc-cCCcceeeeeeehhhhhHHHH
Confidence 88777332222233355566666666663 4799999998732 111111 11122 23455554432111 1
Q ss_pred Hhhh----cCC--ceEeccCCChHHHHHHHHHhhCCCC-CCCCCcchHHHHHHHHHcCCc
Q 011568 284 VCRS----MKC--KQVEIELLSKKEALNLFIDKVGSSI-LQVPTLNEGIINEVVEECGRL 336 (483)
Q Consensus 284 v~~~----~~~--~~~~l~~L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~~~i~~~~~G~ 336 (483)
.... .+. ..+...|.+.++..++|..+..... ... ....++.+++++.|.
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~---~~~Aie~~ArKvaa~ 361 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIF---LNAAIELCARKVAAP 361 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccccccc---chHHHHHHHHHhccC
Confidence 1111 122 3478899999999999999875542 222 333445555555443
No 94
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.16 E-value=5.7e-05 Score=76.18 Aligned_cols=191 Identities=16% Similarity=0.206 Sum_probs=109.6
Q ss_pred HHHHHHhcCC-CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCH
Q 011568 152 KEIWEDLMGD-KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFN-DVIWVTVSQPLDLIKLQTEIATALKQSLPENEDK 229 (483)
Q Consensus 152 ~~l~~~L~~~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~ 229 (483)
....++..+. ....+.|+|++|+|||+|++.+++.+.+ .+.. .++|++. .++..++...+... .
T Consensus 118 ~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~--~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~- 183 (440)
T PRK14088 118 HAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ--NEPDLRVMYITS------EKFLNDLVDSMKEG-----K- 183 (440)
T ss_pred HHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHH--hCCCCeEEEEEH------HHHHHHHHHHHhcc-----c-
Confidence 3344444332 2456999999999999999999998422 2222 3667664 45666666655421 1
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCCccC---c-cccccCCCC-CCCCcEEEEecC-ChhHh--------hhcCC-ceEe
Q 011568 230 VSRAGRLLRMLKAKEKFVLILDDMWEAFP---L-EEVGIPEPN-EENGCKLVITTR-SCRVC--------RSMKC-KQVE 294 (483)
Q Consensus 230 ~~~~~~l~~~l~~~~~~LlVlDdv~~~~~---~-~~l~~~l~~-~~~~s~ilvTtR-~~~v~--------~~~~~-~~~~ 294 (483)
...+.+.+.. +.-+|+|||++.... . ..+...+.. ...+..||+||. ...-. ..+.. ..+.
T Consensus 184 ---~~~f~~~~~~-~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~ 259 (440)
T PRK14088 184 ---LNEFREKYRK-KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAK 259 (440)
T ss_pred ---HHHHHHHHHh-cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEe
Confidence 1223334433 466899999974311 1 122111110 122446888874 32211 11221 3578
Q ss_pred ccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHhh------cC-CCChHHHHHHHHHH
Q 011568 295 IELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAASM------SG-EEEIYEWQNALNEL 363 (483)
Q Consensus 295 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l------~~-~~~~~~w~~~l~~l 363 (483)
+++.+.+.-..++++.+......- .++....|++.+.|..-.+.-+-..+ .+ .-+...-+.++...
T Consensus 260 i~~pd~e~r~~IL~~~~~~~~~~l---~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 260 LEPPDEETRKKIARKMLEIEHGEL---PEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred eCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 999999999999998875443333 56788999999988755443322211 11 24566666666654
No 95
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.15 E-value=1.4e-05 Score=79.33 Aligned_cols=169 Identities=13% Similarity=0.216 Sum_probs=92.8
Q ss_pred ccccccchHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCC
Q 011568 140 RNLAGKRTGKIVKEIWEDLM----G---------DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPL 206 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 206 (483)
..+.|.+ +.++++.+.+. . ...+-|.++|++|+|||++|+.+++.+ ... |+.++.
T Consensus 131 ~di~Gl~--~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~-- 198 (389)
T PRK03992 131 EDIGGLE--EQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG-- 198 (389)
T ss_pred HHhCCcH--HHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh--
Confidence 4578887 56666655442 1 234669999999999999999999882 222 222221
Q ss_pred CHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc------------C----ccccccCCC--C
Q 011568 207 DLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF------------P----LEEVGIPEP--N 268 (483)
Q Consensus 207 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~------------~----~~~l~~~l~--~ 268 (483)
.++. .... .........+.+......+.+|+||+++... . +..+...+. .
T Consensus 199 --~~l~----~~~~------g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 --SELV----QKFI------GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred --HHHh----Hhhc------cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 1111 1110 1112233334444433478999999997431 0 011111111 1
Q ss_pred CCCCcEEEEecCChhHhh-hc---C-C-ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCc
Q 011568 269 EENGCKLVITTRSCRVCR-SM---K-C-KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRL 336 (483)
Q Consensus 269 ~~~~s~ilvTtR~~~v~~-~~---~-~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 336 (483)
...+..||.||....... .. + . ..+.+++.+.++-.++|+.+......+. ......+++.+.|.
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~----~~~~~~la~~t~g~ 336 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD----DVDLEELAELTEGA 336 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC----cCCHHHHHHHcCCC
Confidence 123456777775432211 11 1 1 3489999999999999998765442221 11245677777774
No 96
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=0.00011 Score=76.44 Aligned_cols=188 Identities=11% Similarity=0.135 Sum_probs=102.8
Q ss_pred ccccccchHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDK-VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
..++|.+ ...+.+.+++..+. ...+.++|+.|+||||+|+.+.+.+..... . ...+++....++.+...
T Consensus 16 ~~viGq~--~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~--~------~~~pC~~C~~C~~i~~g 85 (559)
T PRK05563 16 EDVVGQE--HITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNP--P------DGEPCNECEICKAITNG 85 (559)
T ss_pred HhccCcH--HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCC--C------CCCCCCccHHHHHHhcC
Confidence 4599988 77888888887765 466788999999999999999887421110 0 00111111222222111
Q ss_pred hcccC---C-CCCCHHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEE-EecCChhHhhh
Q 011568 219 LKQSL---P-ENEDKVSRAGRLLRMLK----AKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLV-ITTRSCRVCRS 287 (483)
Q Consensus 219 l~~~~---~-~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~il-vTtR~~~v~~~ 287 (483)
...+. + ......+.++.+..... .++.-++|+|+++.. ..+..+...+-.......+| .||....+...
T Consensus 86 ~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 86 SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 00000 0 00011112222222221 136678899999744 22333332222222334444 45444333222
Q ss_pred c--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHH
Q 011568 288 M--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAI 340 (483)
Q Consensus 288 ~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 340 (483)
. .+..+.+.+++.++....+...+....... .++.+..|++.++|.+.-+
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i---~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEY---EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 1 234588999999999998887764433222 4567888999999877543
No 97
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.13 E-value=2.2e-05 Score=83.74 Aligned_cols=155 Identities=16% Similarity=0.194 Sum_probs=89.4
Q ss_pred cccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCC---CCeEEEEEeCCCCCHHHHHHHHHH
Q 011568 141 NLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNK---FNDVIWVTVSQPLDLIKLQTEIAT 217 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~il~ 217 (483)
+++||+ +++.++++.|......-+.++|++|+|||++|+.+++.+...... .++.+|.. +...+ +.
T Consensus 187 ~liGR~--~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la 255 (758)
T PRK11034 187 PLIGRE--KELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA 255 (758)
T ss_pred cCcCCC--HHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc
Confidence 699999 899999998887655666789999999999999999874221111 12334421 11111 10
Q ss_pred HhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--------C--ccccccCCCCCCCCcEEEEecCChhHhhh
Q 011568 218 ALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF--------P--LEEVGIPEPNEENGCKLVITTRSCRVCRS 287 (483)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--------~--~~~l~~~l~~~~~~s~ilvTtR~~~v~~~ 287 (483)
+.. ...+.+.....+.+.+...++.+|+||+++... . ...+..++.. ...-++|-+|........
T Consensus 256 --G~~--~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~~~ 330 (758)
T PRK11034 256 --GTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNI 330 (758)
T ss_pred --ccc--hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHHHH
Confidence 111 112334444555555544367899999997421 1 1111122221 123345555543332111
Q ss_pred --------cCCceEeccCCChHHHHHHHHHhh
Q 011568 288 --------MKCKQVEIELLSKKEALNLFIDKV 311 (483)
Q Consensus 288 --------~~~~~~~l~~L~~~ea~~Lf~~~~ 311 (483)
-....+.+++.+.+++..++....
T Consensus 331 ~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 112468999999999999998654
No 98
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.13 E-value=2e-05 Score=77.85 Aligned_cols=107 Identities=16% Similarity=0.148 Sum_probs=68.0
Q ss_pred cccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 011568 141 NLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALK 220 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 220 (483)
.+++.+ ...+.+...|... +.|.++|++|+|||++|+.+++.+ .....|..+.||.+....+..+++..+.-. +
T Consensus 176 d~~i~e--~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~ 249 (459)
T PRK11331 176 DLFIPE--TTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-G 249 (459)
T ss_pred cccCCH--HHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCCC-C
Confidence 355655 6788888888754 578889999999999999999883 234567788999999888776665432100 0
Q ss_pred ccCCCCCCHHHHHHHHHHHHhc-CCeEEEEEeCCCC
Q 011568 221 QSLPENEDKVSRAGRLLRMLKA-KEKFVLILDDMWE 255 (483)
Q Consensus 221 ~~~~~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~ 255 (483)
....... ......+...... .++++||+|++..
T Consensus 250 vgy~~~~--G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 250 VGFRRKD--GIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred CCeEecC--chHHHHHHHHHhcccCCcEEEEehhhc
Confidence 0000000 0111112222222 3689999999974
No 99
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.13 E-value=6.8e-05 Score=76.29 Aligned_cols=180 Identities=18% Similarity=0.229 Sum_probs=104.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
...+.|+|++|+|||+|++.+++.+.+. ..-..+++++.. ++...+...+... . ...+.+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~v~yi~~~------~~~~~~~~~~~~~-----~----~~~~~~~~~- 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEK-NPNAKVVYVTSE------KFTNDFVNALRNN-----T----MEEFKEKYR- 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEEEHH------HHHHHHHHHHHcC-----c----HHHHHHHHh-
Confidence 4678999999999999999999984221 111235566543 3444444444321 1 123344444
Q ss_pred CCeEEEEEeCCCCccC----ccccccCCCC-CCCCcEEEEecCChh---------HhhhcCC-ceEeccCCChHHHHHHH
Q 011568 243 KEKFVLILDDMWEAFP----LEEVGIPEPN-EENGCKLVITTRSCR---------VCRSMKC-KQVEIELLSKKEALNLF 307 (483)
Q Consensus 243 ~~~~LlVlDdv~~~~~----~~~l~~~l~~-~~~~s~ilvTtR~~~---------v~~~~~~-~~~~l~~L~~~ea~~Lf 307 (483)
+.-+|||||++.... .+.+...+.. ...+..+|+||.... +...+.. ..+++++.+.++-..++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 355899999974311 1122111110 122445777775432 1222222 35899999999999999
Q ss_pred HHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHhh-------cCCCChHHHHHHHHHH
Q 011568 308 IDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAASM-------SGEEEIYEWQNALNEL 363 (483)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l-------~~~~~~~~w~~~l~~l 363 (483)
.+.+....... .++....|++.+.|..-.+.-+-..+ ...-+....+.++..+
T Consensus 290 ~~~~~~~~~~l---~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 290 KKKAEEEGIDL---PDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHcCCCC---CHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 99876533233 56789999999998876443222211 1124566666666654
No 100
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.12 E-value=4.2e-05 Score=74.15 Aligned_cols=144 Identities=15% Similarity=0.210 Sum_probs=81.2
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
..++|.+ ...+.+..++.++.. .++.++|++|+|||++|+.+++.+ .. ....++.+. .. .+..+..+..
T Consensus 21 ~~~~~~~--~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~---~~~~i~~~~-~~-~~~i~~~l~~ 90 (316)
T PHA02544 21 DECILPA--ADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GA---EVLFVNGSD-CR-IDFVRNRLTR 90 (316)
T ss_pred HHhcCcH--HHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Cc---cceEeccCc-cc-HHHHHHHHHH
Confidence 4588988 778888888877654 567779999999999999999872 21 233444443 22 1222221111
Q ss_pred hcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cC-ccccccCCCCCCCCcEEEEecCChh-Hhhh--cCCce
Q 011568 219 LKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEA--FP-LEEVGIPEPNEENGCKLVITTRSCR-VCRS--MKCKQ 292 (483)
Q Consensus 219 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~-~~~l~~~l~~~~~~s~ilvTtR~~~-v~~~--~~~~~ 292 (483)
+.... .+.. .+-++|+|+++.. .. ...+...+.....++.+|+||.... +... ..+..
T Consensus 91 ~~~~~---------------~~~~-~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 91 FASTV---------------SLTG-GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred HHHhh---------------cccC-CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 11000 0112 4668999999744 11 1222222222245677888886432 1111 11234
Q ss_pred EeccCCChHHHHHHHHH
Q 011568 293 VEIELLSKKEALNLFID 309 (483)
Q Consensus 293 ~~l~~L~~~ea~~Lf~~ 309 (483)
+.++..+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 67777778877766543
No 101
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=0.00012 Score=76.72 Aligned_cols=191 Identities=13% Similarity=0.162 Sum_probs=104.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
..++|.+ ..+..|..++..+.. +.+.++|+.|+||||+|+.+++.+... ..... ....+...+.++.+...
T Consensus 16 ~~liGq~--~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~--~~~~~----~~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 16 DELVGQE--AIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL--NSDKP----TPEPCGKCELCRAIAAG 87 (620)
T ss_pred hhccChH--HHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC--CcCCC----CCCCCcccHHHHHHhcC
Confidence 3588987 677888888877653 678899999999999999999985221 11100 00112222333333222
Q ss_pred hcccC---C-CCCCHHHHHHHHHHHHhc----CCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEE-EecCChhHhhh
Q 011568 219 LKQSL---P-ENEDKVSRAGRLLRMLKA----KEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLV-ITTRSCRVCRS 287 (483)
Q Consensus 219 l~~~~---~-~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~il-vTtR~~~v~~~ 287 (483)
..... . ......+.++.+...... +++-++|+|+++... ....+...+-.....+.+| +|+....+...
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 11100 0 001111222222222221 255689999998542 2333333332222334444 44443333322
Q ss_pred c--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHH
Q 011568 288 M--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIV 341 (483)
Q Consensus 288 ~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 341 (483)
. .+..+.+..++.++....+...+....... .++.+..|++.++|.+..+.
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i---s~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI---EPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 2 234588889999998888877654432222 35678899999999876443
No 102
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.09 E-value=0.00011 Score=75.69 Aligned_cols=157 Identities=13% Similarity=0.194 Sum_probs=94.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAK 243 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 243 (483)
..+.|+|..|+|||.|++.+++.+...... ..+++++. .++..++...+... ....+.+.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g-~~V~Yita------eef~~el~~al~~~---------~~~~f~~~y~-- 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPG-TRVRYVSS------EEFTNEFINSIRDG---------KGDSFRRRYR-- 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCC-CeEEEeeH------HHHHHHHHHHHHhc---------cHHHHHHHhh--
Confidence 468999999999999999999984221111 23566653 44555555444321 1122334444
Q ss_pred CeEEEEEeCCCCcc---Cc-cccccCCCC-CCCCcEEEEecCCh---------hHhhhcCC-ceEeccCCChHHHHHHHH
Q 011568 244 EKFVLILDDMWEAF---PL-EEVGIPEPN-EENGCKLVITTRSC---------RVCRSMKC-KQVEIELLSKKEALNLFI 308 (483)
Q Consensus 244 ~~~LlVlDdv~~~~---~~-~~l~~~l~~-~~~~s~ilvTtR~~---------~v~~~~~~-~~~~l~~L~~~ea~~Lf~ 308 (483)
+.-+|||||+.... .+ +.+...+.. ...+..|||||... .+...+.. -.+.|.+.+.+.-..++.
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 34689999997431 11 112111111 12345688888752 12222222 347999999999999999
Q ss_pred HhhCCCCCCCCCcchHHHHHHHHHcCCchHHHH
Q 011568 309 DKVGSSILQVPTLNEGIINEVVEECGRLPLAIV 341 (483)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 341 (483)
+++....... .++++.-|++.+.+..-.|.
T Consensus 457 kka~~r~l~l---~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 457 KKAVQEQLNA---PPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHhcCCCC---CHHHHHHHHHhccCCHHHHH
Confidence 8876554443 56788888888887755443
No 103
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=6.8e-05 Score=78.21 Aligned_cols=192 Identities=13% Similarity=0.201 Sum_probs=103.2
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
..++|.+ ..+..|..++..+.. ..+.++|+.|+||||+|+.+++.+..... .. ..+++.......+...
T Consensus 16 ~~iiGq~--~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~-~~-------~~~c~~c~~c~~i~~g 85 (576)
T PRK14965 16 SDLTGQE--HVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQG-LT-------AEPCNVCPPCVEITEG 85 (576)
T ss_pred HHccCcH--HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCC-CC-------CCCCCccHHHHHHhcC
Confidence 4589988 778888888887765 56789999999999999999888421110 00 0011111111111110
Q ss_pred hccc---CC-CCCCHHHHHHHHHHHHhc----CCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEE-EecCChhHhhh
Q 011568 219 LKQS---LP-ENEDKVSRAGRLLRMLKA----KEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLV-ITTRSCRVCRS 287 (483)
Q Consensus 219 l~~~---~~-~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~il-vTtR~~~v~~~ 287 (483)
-... .+ ......+.++.+...+.. .++-++|+|+++... ..+.+...+-.....+.+| +||....+...
T Consensus 86 ~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 86 RSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 0000 00 000001112222222211 255689999997432 2333332222222344454 45554444332
Q ss_pred c--CCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCch-HHHHHHH
Q 011568 288 M--KCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLP-LAIVTVA 344 (483)
Q Consensus 288 ~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai~~~~ 344 (483)
. .+..+++.+++.++....+...+....... .++.+..|++.++|.. .++..+-
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i---~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI---SDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 234588999999999888877654332222 4567888999999865 4555443
No 104
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.07 E-value=7e-05 Score=71.07 Aligned_cols=131 Identities=17% Similarity=0.137 Sum_probs=70.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKE 244 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 244 (483)
-+.++|++|+|||++|+.+++.+... ......-|+.++. .++ +..+.. .... ....+.+.. .
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~-g~~~~~~~v~v~~----~~l----~~~~~g-----~~~~-~~~~~~~~a---~ 121 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRL-GYVRKGHLVSVTR----DDL----VGQYIG-----HTAP-KTKEILKRA---M 121 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc-CCcccceEEEecH----HHH----hHhhcc-----cchH-HHHHHHHHc---c
Confidence 58899999999999998887774322 1111122444432 122 222211 1111 112222222 3
Q ss_pred eEEEEEeCCCCc-----------cCccccccCCCCCCCCcEEEEecCChhHhhh--cC-------CceEeccCCChHHHH
Q 011568 245 KFVLILDDMWEA-----------FPLEEVGIPEPNEENGCKLVITTRSCRVCRS--MK-------CKQVEIELLSKKEAL 304 (483)
Q Consensus 245 ~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~s~ilvTtR~~~v~~~--~~-------~~~~~l~~L~~~ea~ 304 (483)
.-+|+||++... .....+...+.....+.+||+++........ .. ...+.+++++.+|..
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 468999999632 1112222233333345566666654322111 11 245899999999999
Q ss_pred HHHHHhhCC
Q 011568 305 NLFIDKVGS 313 (483)
Q Consensus 305 ~Lf~~~~~~ 313 (483)
.++...+..
T Consensus 202 ~I~~~~l~~ 210 (284)
T TIGR02880 202 VIAGLMLKE 210 (284)
T ss_pred HHHHHHHHH
Confidence 998887644
No 105
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.07 E-value=6.2e-05 Score=71.38 Aligned_cols=196 Identities=13% Similarity=0.121 Sum_probs=114.3
Q ss_pred ccccccchHHHHHHHHHHhcCCC---ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDK---VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIA 216 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~---~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 216 (483)
+++.+|+ ..+..+...+.+.. .+.|.|+|.+|+|||.+.+++.+.. . -..+|+++-..++...++..|+
T Consensus 6 ~~v~~Re--~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-n-----~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 6 PNVPCRE--SQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-N-----LENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred cCccchH--HHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-C-----CcceeeehHHhccHHHHHHHHH
Confidence 3577888 67788877776654 3556899999999999999999982 1 1368999999999999999999
Q ss_pred HHhcc-cCCCCCC------HHHHHHHHHH--HHhc-CCeEEEEEeCCCCccCccccccCC------CCCCCCcEEEEecC
Q 011568 217 TALKQ-SLPENED------KVSRAGRLLR--MLKA-KEKFVLILDDMWEAFPLEEVGIPE------PNEENGCKLVITTR 280 (483)
Q Consensus 217 ~~l~~-~~~~~~~------~~~~~~~l~~--~l~~-~~~~LlVlDdv~~~~~~~~l~~~l------~~~~~~s~ilvTtR 280 (483)
.+++. +.+.... .......+.+ .... ++.++||||+++...+.+....+. .-..+... |+++-
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~-iils~ 156 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIV-IILSA 156 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceE-EEEec
Confidence 99962 2221111 1112222222 1112 368999999998765554321110 01122333 33332
Q ss_pred C---hhHhhhcCCc---eEeccCCChHHHHHHHHHhhCCCCCC-C-CCcchHHHHHHHHHcCCchHHHHHHHH
Q 011568 281 S---CRVCRSMKCK---QVEIELLSKKEALNLFIDKVGSSILQ-V-PTLNEGIINEVVEECGRLPLAIVTVAA 345 (483)
Q Consensus 281 ~---~~v~~~~~~~---~~~l~~L~~~ea~~Lf~~~~~~~~~~-~-~~~~~~~~~~i~~~~~G~Plai~~~~~ 345 (483)
. ......+++. .+..+.-+.+|...++.+.-.+.... . ...+.-+..-....|+ -+-.+..+..
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~ 228 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLIS 228 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHH
Confidence 2 2222224442 36778889999999887643221100 0 0012223344555666 5555555443
No 106
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.06 E-value=0.00019 Score=64.70 Aligned_cols=182 Identities=19% Similarity=0.228 Sum_probs=110.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcccCCCCC--CHHHHHHHH
Q 011568 160 GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQSLPENE--DKVSRAGRL 236 (483)
Q Consensus 160 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~--~~~~~~~~l 236 (483)
.++..++.|+|.-|+|||.+.+.....+. + +.++-+.++. ..+...+...++..+..+..... -.+...+.+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~---~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLN---E--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDREL 122 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcC---C--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Confidence 34567999999999999999995555421 1 1222244443 55677888888888877221111 123334445
Q ss_pred HHHHhcCCe-EEEEEeCCCCc--cCccccccCCC---CCCCCcEEEEecCCh-------hHhhhcC--Cce-EeccCCCh
Q 011568 237 LRMLKAKEK-FVLILDDMWEA--FPLEEVGIPEP---NEENGCKLVITTRSC-------RVCRSMK--CKQ-VEIELLSK 300 (483)
Q Consensus 237 ~~~l~~~~~-~LlVlDdv~~~--~~~~~l~~~l~---~~~~~s~ilvTtR~~-------~v~~~~~--~~~-~~l~~L~~ 300 (483)
....+.+++ ..+++|+..+. ..++.+..... ....--+|+..-..+ .+..... +.. |.+.|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 555555566 99999998743 22322221111 111111233332211 1111111 122 89999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHh
Q 011568 301 KEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAAS 346 (483)
Q Consensus 301 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 346 (483)
++...++..+..+...+.+-...+....|.....|.|.+|+.++..
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 9999999998877655554446678888999999999999888743
No 107
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.03 E-value=8.7e-05 Score=81.24 Aligned_cols=154 Identities=12% Similarity=0.191 Sum_probs=87.6
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccC--CCC-CCeEE-EEEeCCCCCHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEK--PNK-FNDVI-WVTVSQPLDLIKLQTEI 215 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~-f~~~~-wv~~~~~~~~~~~~~~i 215 (483)
.+++||+ +++.+++..|.......+.++|++|+|||++|..+++.+..- ... ....+ .++++ .+
T Consensus 173 ~~~igr~--~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l---- 240 (852)
T TIGR03346 173 DPVIGRD--EEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------AL---- 240 (852)
T ss_pred CcCCCcH--HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HH----
Confidence 3599999 899999999987766777799999999999999999884211 000 11222 22221 11
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCccC---------ccccccCCCCCCCC-cEEEEecCChhH
Q 011568 216 ATALKQSLPENEDKVSRAGRLLRMLKA-KEKFVLILDDMWEAFP---------LEEVGIPEPNEENG-CKLVITTRSCRV 284 (483)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~~---------~~~l~~~l~~~~~~-s~ilvTtR~~~v 284 (483)
+. +.. ...+.+.....+...+.. +++.+|++|+++.... ...+..+.. ..| -.+|-+|.....
T Consensus 241 ~a--~~~--~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 241 IA--GAK--YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEY 314 (852)
T ss_pred hh--cch--hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHH
Confidence 00 000 011233344444444432 3689999999974321 111211222 223 344544443332
Q ss_pred hh--------hcCCceEeccCCChHHHHHHHHHhh
Q 011568 285 CR--------SMKCKQVEIELLSKKEALNLFIDKV 311 (483)
Q Consensus 285 ~~--------~~~~~~~~l~~L~~~ea~~Lf~~~~ 311 (483)
-. .-....+.++..+.++...++....
T Consensus 315 r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 315 RKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 11 1112458899999999999987653
No 108
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=0.00015 Score=69.99 Aligned_cols=155 Identities=15% Similarity=0.204 Sum_probs=86.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCC------------------CCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCC
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKP------------------NKFNDVIWVTVSQPLDLIKLQTEIATALKQSLP 224 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 224 (483)
...+.++|+.|+|||++|..++..+.... +..+...|+.-....
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~------------------ 83 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEAD------------------ 83 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCC------------------
Confidence 46788999999999999999998863211 012223333221100
Q ss_pred CCCCHHHHHHHHHHHHhc----CCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEEecCCh-hHhhhc--CCceEec
Q 011568 225 ENEDKVSRAGRLLRMLKA----KEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVITTRSC-RVCRSM--KCKQVEI 295 (483)
Q Consensus 225 ~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilvTtR~~-~v~~~~--~~~~~~l 295 (483)
.... .+.++.+.+.+.. +++-++|+|+++.. ...+.+...+-.-..++.+|+||.+. .+.... .+..+.+
T Consensus 84 ~~i~-id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~ 162 (328)
T PRK05707 84 KTIK-VDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQAC 162 (328)
T ss_pred CCCC-HHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeC
Confidence 0011 1222223332221 24445577999853 22333322222212355666666553 333222 2356899
Q ss_pred cCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHH
Q 011568 296 ELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTV 343 (483)
Q Consensus 296 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 343 (483)
.+++.+++.+.+....... .++.+..++..++|.|+.+..+
T Consensus 163 ~~~~~~~~~~~L~~~~~~~-------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 163 PLPSNEESLQWLQQALPES-------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CCcCHHHHHHHHHHhcccC-------ChHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999998753111 2345667889999999755444
No 109
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.00 E-value=3.3e-05 Score=64.69 Aligned_cols=90 Identities=21% Similarity=0.171 Sum_probs=51.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAK 243 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 243 (483)
..+.|+|++|+||||+++.++..+ ......+++++.+........... ...................+.......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999883 222234666665543322222111 111111112233344444555555552
Q ss_pred CeEEEEEeCCCCccC
Q 011568 244 EKFVLILDDMWEAFP 258 (483)
Q Consensus 244 ~~~LlVlDdv~~~~~ 258 (483)
+..+|++|++.....
T Consensus 78 ~~~viiiDei~~~~~ 92 (148)
T smart00382 78 KPDVLILDEITSLLD 92 (148)
T ss_pred CCCEEEEECCcccCC
Confidence 459999999986533
No 110
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.00 E-value=0.00031 Score=70.82 Aligned_cols=152 Identities=16% Similarity=0.232 Sum_probs=89.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
...+.|+|+.|+|||+|++.+++.+.. ....+++++. ..+...+...+... . ...+...+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~---~~~~v~yi~~------~~f~~~~~~~l~~~-----~----~~~f~~~~~- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRE---SGGKILYVRS------ELFTEHLVSAIRSG-----E----MQRFRQFYR- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEeeH------HHHHHHHHHHHhcc-----h----HHHHHHHcc-
Confidence 357899999999999999999998432 1233556553 34445555554321 1 122333333
Q ss_pred CCeEEEEEeCCCCccC----ccccccCCCC-CCCCcEEEEecCCh-h--------HhhhcCC-ceEeccCCChHHHHHHH
Q 011568 243 KEKFVLILDDMWEAFP----LEEVGIPEPN-EENGCKLVITTRSC-R--------VCRSMKC-KQVEIELLSKKEALNLF 307 (483)
Q Consensus 243 ~~~~LlVlDdv~~~~~----~~~l~~~l~~-~~~~s~ilvTtR~~-~--------v~~~~~~-~~~~l~~L~~~ea~~Lf 307 (483)
..-+|++||+..... .+.+...+.. ...|..||+||... . +...+.. -.+++.+++.++...++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 455889999974321 1122222110 11345678877542 1 1222222 35799999999999999
Q ss_pred HHhhCCCCCCCCCcchHHHHHHHHHcCCch
Q 011568 308 IDKVGSSILQVPTLNEGIINEVVEECGRLP 337 (483)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 337 (483)
.+.+....... .++...-|+..+.|.-
T Consensus 281 ~~k~~~~~~~l---~~evl~~la~~~~~di 307 (445)
T PRK12422 281 ERKAEALSIRI---EETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHcCCCC---CHHHHHHHHHhcCCCH
Confidence 98875543332 4567777888877653
No 111
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.97 E-value=0.00014 Score=79.48 Aligned_cols=155 Identities=14% Similarity=0.160 Sum_probs=86.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccC--CCC-CCe-EEEEEeCCCCCHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEK--PNK-FND-VIWVTVSQPLDLIKLQTEI 215 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~-f~~-~~wv~~~~~~~~~~~~~~i 215 (483)
++++||+ +++.++++.|......-+.++|++|+|||++|+.+...+..- ... ... +++++++.. +
T Consensus 178 ~~vigr~--~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------~--- 246 (857)
T PRK10865 178 DPVIGRD--EEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------V--- 246 (857)
T ss_pred CcCCCCH--HHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------h---
Confidence 3699999 899999999988777778899999999999999999884210 001 112 333333221 0
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHH-hcCCeEEEEEeCCCCccC---------ccccccCCCCCCCCcEEEEecCChhHh
Q 011568 216 ATALKQSLPENEDKVSRAGRLLRML-KAKEKFVLILDDMWEAFP---------LEEVGIPEPNEENGCKLVITTRSCRVC 285 (483)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~~LlVlDdv~~~~~---------~~~l~~~l~~~~~~s~ilvTtR~~~v~ 285 (483)
. +. ......+.....+...+ ..+++.+|++|+++.... ...+..+... ...-++|-+|..+...
T Consensus 247 -a--g~--~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~-~g~l~~IgaTt~~e~r 320 (857)
T PRK10865 247 -A--GA--KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYR 320 (857)
T ss_pred -h--cc--chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh-cCCCeEEEcCCCHHHH
Confidence 0 00 00112233333333333 223789999999974321 1122222221 1233455555443321
Q ss_pred h--------hcCCceEeccCCChHHHHHHHHHhh
Q 011568 286 R--------SMKCKQVEIELLSKKEALNLFIDKV 311 (483)
Q Consensus 286 ~--------~~~~~~~~l~~L~~~ea~~Lf~~~~ 311 (483)
. .-....+.+..-+.++...++....
T Consensus 321 ~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1 1112356777778888888886554
No 112
>CHL00181 cbbX CbbX; Provisional
Probab=97.96 E-value=0.00022 Score=67.69 Aligned_cols=132 Identities=15% Similarity=0.129 Sum_probs=70.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAK 243 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 243 (483)
..+.++|++|+||||+|+.+++.+... +.-...-|+.++. .++ ...+... ... ....+.+..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~-g~~~~~~~~~v~~----~~l----~~~~~g~-----~~~-~~~~~l~~a--- 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKL-GYIKKGHLLTVTR----DDL----VGQYIGH-----TAP-KTKEVLKKA--- 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-CCCCCCceEEecH----HHH----HHHHhcc-----chH-HHHHHHHHc---
Confidence 348899999999999999998873221 1111112444441 122 2222111 111 112222221
Q ss_pred CeEEEEEeCCCCc-----------cCccccccCCCCCCCCcEEEEecCChhHhhhc---------CCceEeccCCChHHH
Q 011568 244 EKFVLILDDMWEA-----------FPLEEVGIPEPNEENGCKLVITTRSCRVCRSM---------KCKQVEIELLSKKEA 303 (483)
Q Consensus 244 ~~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~s~ilvTtR~~~v~~~~---------~~~~~~l~~L~~~ea 303 (483)
..-+|+||++... .....+...+.....+.+||+++......... -...+.+++++.+|.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 3359999999642 11122222222333456677776543332111 113589999999999
Q ss_pred HHHHHHhhCC
Q 011568 304 LNLFIDKVGS 313 (483)
Q Consensus 304 ~~Lf~~~~~~ 313 (483)
.+++...+..
T Consensus 202 ~~I~~~~l~~ 211 (287)
T CHL00181 202 LQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHH
Confidence 9998887644
No 113
>PRK08181 transposase; Validated
Probab=97.94 E-value=0.00036 Score=65.27 Aligned_cols=79 Identities=22% Similarity=0.171 Sum_probs=47.3
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHH
Q 011568 154 IWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRA 233 (483)
Q Consensus 154 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~ 233 (483)
.-+|+.. ..-+.|+|++|+|||.||..+.+.+.. ....++|+++ .+++..+..... .....
T Consensus 99 ~~~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~---~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~--- 159 (269)
T PRK08181 99 GDSWLAK--GANLLLFGPPGGGKSHLAAAIGLALIE---NGWRVLFTRT------TDLVQKLQVARR-----ELQLE--- 159 (269)
T ss_pred HHHHHhc--CceEEEEecCCCcHHHHHHHHHHHHHH---cCCceeeeeH------HHHHHHHHHHHh-----CCcHH---
Confidence 3356543 356999999999999999999987422 2233566553 445555533211 11112
Q ss_pred HHHHHHHhcCCeEEEEEeCCC
Q 011568 234 GRLLRMLKAKEKFVLILDDMW 254 (483)
Q Consensus 234 ~~l~~~l~~~~~~LlVlDdv~ 254 (483)
.+.+.+. +.-||||||+.
T Consensus 160 -~~l~~l~--~~dLLIIDDlg 177 (269)
T PRK08181 160 -SAIAKLD--KFDLLILDDLA 177 (269)
T ss_pred -HHHHHHh--cCCEEEEeccc
Confidence 2233333 45699999996
No 114
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.90 E-value=5.2e-05 Score=78.90 Aligned_cols=194 Identities=13% Similarity=0.121 Sum_probs=96.8
Q ss_pred ccccccchHHHHHHHHHHhcCC-----CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC---CCCHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGD-----KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ---PLDLIKL 211 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~-----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~---~~~~~~~ 211 (483)
..++|.+ +.++++..|+... ...++.|+|++|+||||+++.++..+ .+...-|++-.. ..+....
T Consensus 84 del~~~~--~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l-----~~~~~Ew~npv~~~~~~~~~~~ 156 (637)
T TIGR00602 84 HELAVHK--KKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL-----GIQVQEWSNPTLPDFQKNDHKV 156 (637)
T ss_pred HHhcCcH--HHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh-----hhHHHHHhhhhhhccccccccc
Confidence 3578877 6778888887542 34679999999999999999999873 122223322100 0000011
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHH---H---hcCCeEEEEEeCCCCcc-----Ccccccc-CCCCCCCCcEEEEec
Q 011568 212 QTEIATALKQSLPENEDKVSRAGRLLRM---L---KAKEKFVLILDDMWEAF-----PLEEVGI-PEPNEENGCKLVITT 279 (483)
Q Consensus 212 ~~~il~~l~~~~~~~~~~~~~~~~l~~~---l---~~~~~~LlVlDdv~~~~-----~~~~l~~-~l~~~~~~s~ilvTt 279 (483)
...+..++.................... + ..+++.+|+||++.... .+..+.. .+...+.-.-|++||
T Consensus 157 ~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~T 236 (637)
T TIGR00602 157 TLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIIT 236 (637)
T ss_pred chhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEec
Confidence 1111122111111101111111111111 1 11367899999995321 2333322 222222223455566
Q ss_pred CCh-------------------hHhhhcCCceEeccCCChHHHHHHHHHhhCCCC----CCCCCcchHHHHHHHHHcCCc
Q 011568 280 RSC-------------------RVCRSMKCKQVEIELLSKKEALNLFIDKVGSSI----LQVPTLNEGIINEVVEECGRL 336 (483)
Q Consensus 280 R~~-------------------~v~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~----~~~~~~~~~~~~~i~~~~~G~ 336 (483)
-+. .+.....+..|.+.+++..+....+...+.... .......++....|+..++|-
T Consensus 237 E~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GD 316 (637)
T TIGR00602 237 ESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGD 316 (637)
T ss_pred CCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCCh
Confidence 321 111122334589999999997777766654321 110000246778888888886
Q ss_pred hHHH
Q 011568 337 PLAI 340 (483)
Q Consensus 337 Plai 340 (483)
-..+
T Consensus 317 iRsA 320 (637)
T TIGR00602 317 IRSA 320 (637)
T ss_pred HHHH
Confidence 5433
No 115
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.90 E-value=0.00016 Score=72.02 Aligned_cols=131 Identities=23% Similarity=0.263 Sum_probs=81.2
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcccCCCCC
Q 011568 149 KIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPL-DLIKLQTEIATALKQSLPENE 227 (483)
Q Consensus 149 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~ 227 (483)
....++.+.+..... ++.|.|+-++||||+++.+...+ ... .++++..... +-.++ .+.
T Consensus 24 ~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l-~d~------------ 83 (398)
T COG1373 24 KLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIEL-LDL------------ 83 (398)
T ss_pred hhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhH-HHH------------
Confidence 344555555555434 99999999999999997776662 122 5565543321 11111 111
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEEeCCCCccCccccccCCCCCCCCcEEEEecCChhHh-----hhcCC--ceEeccCCCh
Q 011568 228 DKVSRAGRLLRMLKAKEKFVLILDDMWEAFPLEEVGIPEPNEENGCKLVITTRSCRVC-----RSMKC--KQVEIELLSK 300 (483)
Q Consensus 228 ~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~ilvTtR~~~v~-----~~~~~--~~~~l~~L~~ 300 (483)
...+...... ++.+|+||.|+....|......+.+.++. +|++|+-+.... ..... ..+.+-||+.
T Consensus 84 -----~~~~~~~~~~-~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF 156 (398)
T COG1373 84 -----LRAYIELKER-EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSF 156 (398)
T ss_pred -----HHHHHHhhcc-CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCH
Confidence 1112222222 67899999999999998776666665555 788887764432 22222 3489999999
Q ss_pred HHHHHH
Q 011568 301 KEALNL 306 (483)
Q Consensus 301 ~ea~~L 306 (483)
.|-..+
T Consensus 157 ~Efl~~ 162 (398)
T COG1373 157 REFLKL 162 (398)
T ss_pred HHHHhh
Confidence 987664
No 116
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00037 Score=68.85 Aligned_cols=143 Identities=15% Similarity=0.168 Sum_probs=88.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH--
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRM-- 239 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-- 239 (483)
....+.+.|++|+|||+||..++.. ..|+.+--++...- -..++......+.+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~m-------------------iG~sEsaKc~~i~k~F~ 592 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPEDM-------------------IGLSESAKCAHIKKIFE 592 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHHc-------------------cCccHHHHHHHHHHHHH
Confidence 3567889999999999999999877 57886554442221 112223333333333
Q ss_pred --HhcCCeEEEEEeCCCCccCccccccCC---------------CCCCCCcEEEEecCChhHhhhcCC-----ceEeccC
Q 011568 240 --LKAKEKFVLILDDMWEAFPLEEVGIPE---------------PNEENGCKLVITTRSCRVCRSMKC-----KQVEIEL 297 (483)
Q Consensus 240 --l~~~~~~LlVlDdv~~~~~~~~l~~~l---------------~~~~~~s~ilvTtR~~~v~~~~~~-----~~~~l~~ 297 (483)
.+. .-..||+||+...-+|..++..| |+.++.--|+-||....+...|+. ..|.++.
T Consensus 593 DAYkS-~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpn 671 (744)
T KOG0741|consen 593 DAYKS-PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPN 671 (744)
T ss_pred HhhcC-cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCc
Confidence 344 66799999998776666555443 222333334556666777777764 3589999
Q ss_pred CCh-HHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHc
Q 011568 298 LSK-KEALNLFIDKVGSSILQVPTLNEGIINEVVEEC 333 (483)
Q Consensus 298 L~~-~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~ 333 (483)
++. ++..+.++..-.-. ... .+.++.+...+|
T Consensus 672 l~~~~~~~~vl~~~n~fs-d~~---~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 672 LTTGEQLLEVLEELNIFS-DDE---VRAIAEQLLSKK 704 (744)
T ss_pred cCchHHHHHHHHHccCCC-cch---hHHHHHHHhccc
Confidence 887 77777777653111 111 445556666555
No 117
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.82 E-value=0.00041 Score=70.48 Aligned_cols=157 Identities=12% Similarity=0.207 Sum_probs=82.1
Q ss_pred cccccchHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCC--CCCCeEEEEEeCCC
Q 011568 141 NLAGKRTGKIVKEIWEDLMG-------------DKVSKIGVWGMGGIGKTTIMSNINNKLHEKP--NKFNDVIWVTVSQP 205 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~~~~ 205 (483)
.+.|.+ ..+++|.+.+.- ...+-+.++|++|+|||++|+.+++.+.... .......|+++...
T Consensus 183 dIgGl~--~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 183 DIGGLD--SQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HcCChH--HHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch
Confidence 456666 555555554321 1345689999999999999999999842110 01223445554432
Q ss_pred CCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHH----HHhcCCeEEEEEeCCCCcc---------Cc-----cccccCCC
Q 011568 206 LDLIKLQTEIATALKQSLPENEDKVSRAGRLLR----MLKAKEKFVLILDDMWEAF---------PL-----EEVGIPEP 267 (483)
Q Consensus 206 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~----~l~~~~~~LlVlDdv~~~~---------~~-----~~l~~~l~ 267 (483)
. + +.... .........+.+ ....+++++|+||+++... +. ..+...+.
T Consensus 261 e----L----l~kyv------Gete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 261 E----L----LNKYV------GETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred h----h----ccccc------chHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 1 1 11000 011112222222 2222479999999997421 11 11211111
Q ss_pred C--CCCCcEEEEecCChhHhh-h-c---CC-ceEeccCCChHHHHHHHHHhhCC
Q 011568 268 N--EENGCKLVITTRSCRVCR-S-M---KC-KQVEIELLSKKEALNLFIDKVGS 313 (483)
Q Consensus 268 ~--~~~~s~ilvTtR~~~v~~-~-~---~~-~~~~l~~L~~~ea~~Lf~~~~~~ 313 (483)
. ...+..||.||....... . . .. ..|+++..+.++..++|..+...
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 1 113444555654332211 1 1 11 24899999999999999988643
No 118
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.81 E-value=4.2e-05 Score=63.56 Aligned_cols=68 Identities=25% Similarity=0.319 Sum_probs=41.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC-
Q 011568 166 IGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKE- 244 (483)
Q Consensus 166 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~- 244 (483)
|.|+|++|+|||++|+.+++.+ . + ..+.++.+...+ . ...+.......+.+......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~--~-~~~~i~~~~~~~--------------~--~~~~~~~~i~~~~~~~~~~~~ 58 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---G--F-PFIEIDGSELIS--------------S--YAGDSEQKIRDFFKKAKKSAK 58 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---T--S-EEEEEETTHHHT--------------S--STTHHHHHHHHHHHHHHHTST
T ss_pred CEEECcCCCCeeHHHHHHHhhc---c--c-cccccccccccc--------------c--ccccccccccccccccccccc
Confidence 6799999999999999999993 1 1 234455432100 0 11222333333333333324
Q ss_pred eEEEEEeCCCC
Q 011568 245 KFVLILDDMWE 255 (483)
Q Consensus 245 ~~LlVlDdv~~ 255 (483)
+.+|+|||++.
T Consensus 59 ~~vl~iDe~d~ 69 (132)
T PF00004_consen 59 PCVLFIDEIDK 69 (132)
T ss_dssp SEEEEEETGGG
T ss_pred ceeeeeccchh
Confidence 89999999974
No 119
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.77 E-value=0.00014 Score=72.01 Aligned_cols=149 Identities=13% Similarity=0.217 Sum_probs=80.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
.+-+.++|++|+|||+||+.+++. ....| +.+.. ..+ ..... .........+......
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~---l~~~f---i~i~~------s~l----~~k~~------ge~~~~lr~lf~~A~~ 236 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHH---TTATF---IRVVG------SEF----VQKYL------GEGPRMVRDVFRLARE 236 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh---cCCCE---EEEeh------HHH----HHHhc------chhHHHHHHHHHHHHh
Confidence 567999999999999999999988 22222 22211 111 11110 0112233334444444
Q ss_pred CCeEEEEEeCCCCccC----------------ccccccCCC--CCCCCcEEEEecCChhHhhh--c--C-C-ceEeccCC
Q 011568 243 KEKFVLILDDMWEAFP----------------LEEVGIPEP--NEENGCKLVITTRSCRVCRS--M--K-C-KQVEIELL 298 (483)
Q Consensus 243 ~~~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~~s~ilvTtR~~~v~~~--~--~-~-~~~~l~~L 298 (483)
..+.+|+||+++.... +..+...+. ....+..||.||........ . + . ..+.++..
T Consensus 237 ~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P 316 (398)
T PTZ00454 237 NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 316 (398)
T ss_pred cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCc
Confidence 4789999999874210 011111111 12235567777764332211 1 1 1 34788888
Q ss_pred ChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCch
Q 011568 299 SKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLP 337 (483)
Q Consensus 299 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 337 (483)
+.++...+|........... .-....+++.+.|..
T Consensus 317 ~~~~R~~Il~~~~~~~~l~~----dvd~~~la~~t~g~s 351 (398)
T PTZ00454 317 DRRQKRLIFQTITSKMNLSE----EVDLEDFVSRPEKIS 351 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCc----ccCHHHHHHHcCCCC
Confidence 88888888887654332111 112456777776653
No 120
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.00085 Score=65.17 Aligned_cols=146 Identities=14% Similarity=0.175 Sum_probs=81.5
Q ss_pred ccc-cchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCC--C----------------CCCeEEEEE
Q 011568 142 LAG-KRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKP--N----------------KFNDVIWVT 201 (483)
Q Consensus 142 ~vG-r~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~----------------~f~~~~wv~ 201 (483)
++| .+ ..++.+...+..+.. ....++|+.|+|||++|..+.+.+.... . .++...++.
T Consensus 7 i~~~q~--~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 7 LTALQP--VVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHhhHH--HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 566 44 566777777776654 5679999999999999999988742111 0 011122221
Q ss_pred eCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCCeEEEEEeCCCCcc--CccccccCCCCCCCCcEE
Q 011568 202 VSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK----AKEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKL 275 (483)
Q Consensus 202 ~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~i 275 (483)
.... ... .+.+..+.+.+. .+++-++|+|+++... ..+.+...+-....++.+
T Consensus 85 ~~~~--------------------~i~-id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~ 143 (329)
T PRK08058 85 PDGQ--------------------SIK-KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTA 143 (329)
T ss_pred cccc--------------------cCC-HHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceE
Confidence 1110 011 122222333322 1256689999987432 223333233222345666
Q ss_pred EEecCC-hhHhhhc--CCceEeccCCChHHHHHHHHHh
Q 011568 276 VITTRS-CRVCRSM--KCKQVEIELLSKKEALNLFIDK 310 (483)
Q Consensus 276 lvTtR~-~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~ 310 (483)
|++|.+ ..+.... .+..+++.+++.++..+.+...
T Consensus 144 Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 144 ILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 666654 3333222 2356899999999998888754
No 121
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.72 E-value=0.0014 Score=64.30 Aligned_cols=153 Identities=18% Similarity=0.220 Sum_probs=90.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK 241 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (483)
....+.|+|+.|.|||.|++.+.+.. ....+....+.++ ...+...++..+.. .....+++.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~----se~f~~~~v~a~~~---------~~~~~Fk~~y- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLT----SEDFTNDFVKALRD---------NEMEKFKEKY- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEecc----HHHHHHHHHHHHHh---------hhHHHHHHhh-
Confidence 36899999999999999999999983 3334432233322 33444555444432 2233444444
Q ss_pred cCCeEEEEEeCCCCccC---c-cccccCCCC-CCCCcEEEEecCCh---------hHhhhcCC-ceEeccCCChHHHHHH
Q 011568 242 AKEKFVLILDDMWEAFP---L-EEVGIPEPN-EENGCKLVITTRSC---------RVCRSMKC-KQVEIELLSKKEALNL 306 (483)
Q Consensus 242 ~~~~~LlVlDdv~~~~~---~-~~l~~~l~~-~~~~s~ilvTtR~~---------~v~~~~~~-~~~~l~~L~~~ea~~L 306 (483)
. -=++++||++-... + +.+...|.. ...|..||+|++.. .+...+.. -.+.+.+.+.+....+
T Consensus 175 ~--~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 S--LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred c--cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 2 34889999974221 1 122222211 12344799998642 22233333 3589999999999999
Q ss_pred HHHhhCCCCCCCCCcchHHHHHHHHHcCCc
Q 011568 307 FIDKVGSSILQVPTLNEGIINEVVEECGRL 336 (483)
Q Consensus 307 f~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 336 (483)
+.+.+......- .+++..-|++.....
T Consensus 253 L~kka~~~~~~i---~~ev~~~la~~~~~n 279 (408)
T COG0593 253 LRKKAEDRGIEI---PDEVLEFLAKRLDRN 279 (408)
T ss_pred HHHHHHhcCCCC---CHHHHHHHHHHhhcc
Confidence 999776554333 345666666655443
No 122
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.72 E-value=0.0015 Score=67.34 Aligned_cols=199 Identities=13% Similarity=0.175 Sum_probs=101.0
Q ss_pred ccccccchH-HHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHH
Q 011568 140 RNLAGKRTG-KIVKEIWEDLMG---------DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLI 209 (483)
Q Consensus 140 ~~~vGr~~~-~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 209 (483)
.+++|.+.. +.+.+++.++.. ...+-+.++|++|+|||+||+.+++. .... ++.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~---~~~~-----~~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE---AGVP-----FFSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH---cCCC-----eeeccH----H
Confidence 357777621 233444444432 12345889999999999999999987 2222 222221 1
Q ss_pred HHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------------ccccccCCC--CCCC
Q 011568 210 KLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP----------------LEEVGIPEP--NEEN 271 (483)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~ 271 (483)
++.. ... ... ......+........+++|+||+++.... +..+...+. ....
T Consensus 123 ~~~~----~~~-----g~~-~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 123 DFVE----MFV-----GVG-ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHHH----HHh-----ccc-HHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 1111 110 011 12223333333333789999999964210 001111111 1223
Q ss_pred CcEEEEecCChh-Hhhhc----CC-ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCc-hHHHHHHH
Q 011568 272 GCKLVITTRSCR-VCRSM----KC-KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRL-PLAIVTVA 344 (483)
Q Consensus 272 ~s~ilvTtR~~~-v~~~~----~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~~ 344 (483)
+..||.||.... +.... .. ..+.++..+.++-.++|..+........ ......+++.+.|. +--|..+.
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~----~~~l~~la~~t~G~sgadl~~l~ 268 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP----DVDLKAVARRTPGFSGADLANLL 268 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc----chhHHHHHHhCCCCCHHHHHHHH
Confidence 445566664432 11111 11 3488888898888999988765432221 22356788888874 44444333
Q ss_pred H-----hhcCC---CChHHHHHHHHHHh
Q 011568 345 A-----SMSGE---EEIYEWQNALNELR 364 (483)
Q Consensus 345 ~-----~l~~~---~~~~~w~~~l~~l~ 364 (483)
. ..+.+ -+.+.+..+++...
T Consensus 269 ~eA~~~a~~~~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 269 NEAALLAARKNKTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 2 12222 34566666666553
No 123
>CHL00176 ftsH cell division protein; Validated
Probab=97.71 E-value=0.001 Score=69.94 Aligned_cols=198 Identities=13% Similarity=0.188 Sum_probs=103.1
Q ss_pred ccccccchH-HHHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHH
Q 011568 140 RNLAGKRTG-KIVKEIWEDLMGD---------KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLI 209 (483)
Q Consensus 140 ~~~vGr~~~-~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 209 (483)
..++|.+.. +++.+++.++... ..+-+.++|++|+|||+||+.+++.. .. -|+.++. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~-----p~i~is~----s 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EV-----PFFSISG----S 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CC-----CeeeccH----H
Confidence 347776522 4455566655432 13468999999999999999999872 11 1233221 1
Q ss_pred HHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc----------------CccccccCCC--CCCC
Q 011568 210 KLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF----------------PLEEVGIPEP--NEEN 271 (483)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~----------------~~~~l~~~l~--~~~~ 271 (483)
++.... .+ .. ......+........+++|+||+++... .+..+...+. ....
T Consensus 251 ~f~~~~---~g------~~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 251 EFVEMF---VG------VG-AARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred HHHHHh---hh------hh-HHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 111100 00 01 1122333333333489999999997321 0111111111 1233
Q ss_pred CcEEEEecCChhHhh-hc---C-C-ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCC-chHHHHHHH
Q 011568 272 GCKLVITTRSCRVCR-SM---K-C-KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGR-LPLAIVTVA 344 (483)
Q Consensus 272 ~s~ilvTtR~~~v~~-~~---~-~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~~ 344 (483)
+..||.||....... .+ + . ..+.++..+.++-.++|+.++...... .......+++.+.| .+--|..+.
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~----~d~~l~~lA~~t~G~sgaDL~~lv 396 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS----PDVSLELIARRTPGFSGADLANLL 396 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc----hhHHHHHHHhcCCCCCHHHHHHHH
Confidence 555666665433221 11 1 1 357888889999999998876543211 23456778888887 333332222
Q ss_pred H-----hhcCC---CChHHHHHHHHHH
Q 011568 345 A-----SMSGE---EEIYEWQNALNEL 363 (483)
Q Consensus 345 ~-----~l~~~---~~~~~w~~~l~~l 363 (483)
. ..+.+ -+......++++.
T Consensus 397 neAal~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 397 NEAAILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 1 11222 2456666666655
No 124
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.70 E-value=0.0023 Score=62.58 Aligned_cols=275 Identities=13% Similarity=0.154 Sum_probs=156.8
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHH-HHHHhhhccCCCCCCeEEEEEeCC---CCCHHHHHHHHHHHhcccC-
Q 011568 149 KIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIM-SNINNKLHEKPNKFNDVIWVTVSQ---PLDLIKLQTEIATALKQSL- 223 (483)
Q Consensus 149 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~il~~l~~~~- 223 (483)
+..++|..||....-..|.|.||-|+||+.|+ .++.++ ...++.+.+.+ ..+-..++..++.++|.-+
T Consensus 3 e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~-------r~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~Pv 75 (431)
T PF10443_consen 3 EAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKD-------RKNVLVIDCDQIVKARGDAAFIKNLASQVGYFPV 75 (431)
T ss_pred hHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhC-------CCCEEEEEChHhhhccChHHHHHHHHHhcCCCcc
Confidence 56789999999988899999999999999999 777665 12377777644 2344556666666555311
Q ss_pred ----------------------CC-CCCHHHHHHHHHHH----Hhc-------------------------CCeEEEEEe
Q 011568 224 ----------------------PE-NEDKVSRAGRLLRM----LKA-------------------------KEKFVLILD 251 (483)
Q Consensus 224 ----------------------~~-~~~~~~~~~~l~~~----l~~-------------------------~~~~LlVlD 251 (483)
.. ..+.+.....+.+. |++ ..+=+||+|
T Consensus 76 Fsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVId 155 (431)
T PF10443_consen 76 FSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVID 155 (431)
T ss_pred hHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEEc
Confidence 00 12222222222111 110 136689999
Q ss_pred CCCCccCc-----ccc---ccCCCCCCCCcEEEEecCChhHh----hhcCC---ceEeccCCChHHHHHHHHHhhCCCCC
Q 011568 252 DMWEAFPL-----EEV---GIPEPNEENGCKLVITTRSCRVC----RSMKC---KQVEIELLSKKEALNLFIDKVGSSIL 316 (483)
Q Consensus 252 dv~~~~~~-----~~l---~~~l~~~~~~s~ilvTtR~~~v~----~~~~~---~~~~l~~L~~~ea~~Lf~~~~~~~~~ 316 (483)
|......- +.+ ...+. .++=.+||++|-+.... ..+.. ..+.|...+++.|.++...+......
T Consensus 156 nF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~ 234 (431)
T PF10443_consen 156 NFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTE 234 (431)
T ss_pred chhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccccc
Confidence 98632211 111 01111 23345677777654333 33333 34899999999999999988755311
Q ss_pred C--------------C---CCcchHHHHHHHHHcCCchHHHHHHHHhhcCCCChH-HHHHHHHHHhhhhccCCCchhhHH
Q 011568 317 Q--------------V---PTLNEGIINEVVEECGRLPLAIVTVAASMSGEEEIY-EWQNALNELRGRLRSLNDVDAKVL 378 (483)
Q Consensus 317 ~--------------~---~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~-~w~~~l~~l~~~~~~~~~~~~~i~ 378 (483)
. . ...........++.+||-=.=+..+++.++...++. ....+.++-. ..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~qsa----------~eI~ 304 (431)
T PF10443_consen 235 DSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQSA----------SEIR 304 (431)
T ss_pred ccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----------HHHH
Confidence 0 0 012445667788899999999999999998765543 2223322211 1222
Q ss_pred hHHHh--h--hcCCCCcchhHHHHHhcccCCCccccHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHcCcccccc
Q 011568 379 GRLEF--S--YHRLKDEKLRQCFLDCALYPEDFPILKDELIEYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESAE 454 (483)
Q Consensus 379 ~~l~~--s--y~~L~~~~~k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~ 454 (483)
.++-. . -..+ +=...+.+..+..+.+...++...++.-- +.. + .++..|.+|.+..||....
T Consensus 305 k~fl~~~~~~~~~~-~Wt~~QaW~LIk~Ls~~~~v~Y~~ll~~~----lFk---~------~~E~~L~aLe~aeLItv~~ 370 (431)
T PF10443_consen 305 KMFLLDDSDDAKSL-KWTREQAWYLIKLLSKNDEVPYNELLLSP----LFK---G------NDETALRALEQAELITVTT 370 (431)
T ss_pred HHHhcCCCCcccCC-CCCHHHHHHHHHHhccCCcCcHHHHHccc----ccC---C------CChHHHHHHHHCCcEEEEe
Confidence 22211 0 0111 22334555555555666666666665321 111 1 1234699999999998754
Q ss_pred C
Q 011568 455 D 455 (483)
Q Consensus 455 ~ 455 (483)
.
T Consensus 371 ~ 371 (431)
T PF10443_consen 371 D 371 (431)
T ss_pred c
Confidence 3
No 125
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.0021 Score=61.63 Aligned_cols=172 Identities=15% Similarity=0.181 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCC---------------CCCCeEEEEEeCC-CCCHHHH
Q 011568 149 KIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKP---------------NKFNDVIWVTVSQ-PLDLIKL 211 (483)
Q Consensus 149 ~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------------~~f~~~~wv~~~~-~~~~~~~ 211 (483)
...+.+...+..+.. ..+.++|+.|+||+++|..+++.+.... +..+...|+.... ..+.
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~--- 87 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGD--- 87 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccc---
Confidence 345667777766654 5799999999999999999988752211 0112233332100 0000
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhc----CCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEEEecC-ChhH
Q 011568 212 QTEIATALKQSLPENEDKVSRAGRLLRMLKA----KEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLVITTR-SCRV 284 (483)
Q Consensus 212 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ilvTtR-~~~v 284 (483)
.. ...-..+.++.+.+.+.. +++-++|+|+++... .-+.+.-.+-.-..++.+|++|. ...+
T Consensus 88 ----------k~-~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~l 156 (319)
T PRK08769 88 ----------KL-RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARL 156 (319)
T ss_pred ----------cc-cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhC
Confidence 00 000112233333333332 356799999998532 22222222211133555555554 4444
Q ss_pred hhhcC--CceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHH
Q 011568 285 CRSMK--CKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTV 343 (483)
Q Consensus 285 ~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 343 (483)
..... +..+.+.+++.+++.+.+.... . .+..+..++..++|.|+.+..+
T Consensus 157 LpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~-----~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 157 PATIRSRCQRLEFKLPPAHEALAWLLAQG----V-----SERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred chHHHhhheEeeCCCcCHHHHHHHHHHcC----C-----ChHHHHHHHHHcCCCHHHHHHH
Confidence 33322 3568999999999998887541 1 2234667899999999866443
No 126
>PRK08116 hypothetical protein; Validated
Probab=97.67 E-value=7.6e-05 Score=70.10 Aligned_cols=101 Identities=31% Similarity=0.351 Sum_probs=57.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAK 243 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 243 (483)
..+.|+|.+|+|||.||..+++.+.. .-..+++++ ..+++..+........ ..+ ...+.+.+..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~---~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~----~~~~~~~l~~- 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIE---KGVPVIFVN------FPQLLNRIKSTYKSSG--KED----ENEIIRSLVN- 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEE------HHHHHHHHHHHHhccc--ccc----HHHHHHHhcC-
Confidence 45899999999999999999999532 123456665 3445555554443211 111 2233444554
Q ss_pred CeEEEEEeCCC--CccCcc--ccccCCCC-CCCCcEEEEecCC
Q 011568 244 EKFVLILDDMW--EAFPLE--EVGIPEPN-EENGCKLVITTRS 281 (483)
Q Consensus 244 ~~~LlVlDdv~--~~~~~~--~l~~~l~~-~~~~s~ilvTtR~ 281 (483)
- =||||||+. ...+|. .+...+.. -..+..+|+||..
T Consensus 179 ~-dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 179 A-DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred C-CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3 389999994 233332 12211111 1234568888864
No 127
>PRK08118 topology modulation protein; Reviewed
Probab=97.67 E-value=3e-05 Score=67.41 Aligned_cols=36 Identities=31% Similarity=0.611 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEE
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIW 199 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~w 199 (483)
+.|.|+|++|+||||||+.+++.+....-+|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999985333356777776
No 128
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.66 E-value=0.0013 Score=61.76 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHH
Q 011568 149 KIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQ 212 (483)
Q Consensus 149 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 212 (483)
+.++++..++..+ ..|.|.|++|+|||+||+.+.+. .. . ..+.+++....+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~---lg--~-~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARK---RD--R-PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHH---hC--C-CEEEEeCCccCCHHHHh
Confidence 3456666666654 46678999999999999999876 21 1 24556665554444443
No 129
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.65 E-value=0.00041 Score=67.09 Aligned_cols=102 Identities=12% Similarity=0.139 Sum_probs=65.5
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCe-EEEEEeCC-CCCHHHHHHHHHHHhcccCCCCC
Q 011568 151 VKEIWEDLMG-DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFND-VIWVTVSQ-PLDLIKLQTEIATALKQSLPENE 227 (483)
Q Consensus 151 ~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~ 227 (483)
..++++.+.- +...-+.|+|++|+|||||++.+++.+.. ++-+. ++|+-+.+ ...+.++++.+...+........
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~--~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA--NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh--cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 3445666543 33456799999999999999999988422 12233 46777766 55789999999887776432222
Q ss_pred CHH-----HHHHHHHHHH-hcCCeEEEEEeCCC
Q 011568 228 DKV-----SRAGRLLRML-KAKEKFVLILDDMW 254 (483)
Q Consensus 228 ~~~-----~~~~~l~~~l-~~~~~~LlVlDdv~ 254 (483)
... .......+.+ ..+++++||+|++.
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 211 1122223333 33699999999985
No 130
>PRK10536 hypothetical protein; Provisional
Probab=97.63 E-value=0.00034 Score=64.07 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=33.1
Q ss_pred ccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 142 LAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 142 ~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+.++. .....++.++.+. .++.+.|++|+|||+||..+..+
T Consensus 57 i~p~n--~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 57 ILARN--EAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ccCCC--HHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHH
Confidence 45566 5667777777664 59999999999999999998875
No 131
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.63 E-value=0.00012 Score=66.73 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTV 202 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 202 (483)
-.++|.|.+|+|||||+..+... ....|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~---~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY---LRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh---hcccCCEEEEEec
Confidence 46789999999999999999988 5678887777754
No 132
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.63 E-value=0.00038 Score=69.60 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=79.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
.+-+.++|++|+|||++|+.+++. ....| +.+..+. +. .... .........+......
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~e---l~~~f---i~V~~se------L~----~k~~------Ge~~~~vr~lF~~A~~ 274 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANE---TSATF---LRVVGSE------LI----QKYL------GDGPKLVRELFRVAEE 274 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh---hCCCE---EEEecch------hh----hhhc------chHHHHHHHHHHHHHh
Confidence 456889999999999999999998 33333 2222111 11 1110 0112223334443333
Q ss_pred CCeEEEEEeCCCCccC----------------ccccccCCC--CCCCCcEEEEecCChhHhhh-c---CC--ceEeccCC
Q 011568 243 KEKFVLILDDMWEAFP----------------LEEVGIPEP--NEENGCKLVITTRSCRVCRS-M---KC--KQVEIELL 298 (483)
Q Consensus 243 ~~~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~~s~ilvTtR~~~v~~~-~---~~--~~~~l~~L 298 (483)
..+++|+||+++.... +..+...+. ....+..||.||........ . +. ..|.++..
T Consensus 275 ~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~P 354 (438)
T PTZ00361 275 NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNP 354 (438)
T ss_pred CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCC
Confidence 4789999999863210 000111111 11235567777765433222 1 11 34899999
Q ss_pred ChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCc
Q 011568 299 SKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRL 336 (483)
Q Consensus 299 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 336 (483)
+.++..++|..+........ ......++..+.|+
T Consensus 355 d~~~R~~Il~~~~~k~~l~~----dvdl~~la~~t~g~ 388 (438)
T PTZ00361 355 DEKTKRRIFEIHTSKMTLAE----DVDLEEFIMAKDEL 388 (438)
T ss_pred CHHHHHHHHHHHHhcCCCCc----CcCHHHHHHhcCCC
Confidence 99999999997764432211 11245566676664
No 133
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0011 Score=68.16 Aligned_cols=45 Identities=29% Similarity=0.329 Sum_probs=36.4
Q ss_pred cccccchHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 141 NLAGKRTGKIVKEIWEDLM------GDKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+-+|-+ +.+++|++.|. +-..++++++||+|+|||+|++.+++.+
T Consensus 324 dHYGLe--kVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al 374 (782)
T COG0466 324 DHYGLE--KVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL 374 (782)
T ss_pred cccCch--hHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh
Confidence 356666 77888888772 2245899999999999999999999983
No 134
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.62 E-value=0.00022 Score=64.62 Aligned_cols=87 Identities=11% Similarity=0.181 Sum_probs=54.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh-c-------c-cCCCCCCHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATAL-K-------Q-SLPENEDKVSRA 233 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l-~-------~-~~~~~~~~~~~~ 233 (483)
..++.|+|++|+|||+++.+++.... ..-..++|++... ++..++.+. .... . . ......+.....
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 57999999999999999999987732 2345789999876 555554433 2221 0 0 111111122334
Q ss_pred HHHHHHHhcCCeEEEEEeCCC
Q 011568 234 GRLLRMLKAKEKFVLILDDMW 254 (483)
Q Consensus 234 ~~l~~~l~~~~~~LlVlDdv~ 254 (483)
..+...+...+.-+||+|.+.
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcH
Confidence 555555554457799999985
No 135
>PRK09183 transposase/IS protein; Provisional
Probab=97.59 E-value=0.0012 Score=61.68 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+.|+|++|+|||+||..+++.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 356889999999999999999877
No 136
>PRK07261 topology modulation protein; Provisional
Probab=97.59 E-value=0.00025 Score=61.92 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=40.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKE 244 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 244 (483)
.|.|+|++|+||||||+.+...+.-..-+.+...|-... ...+.++....+...+.+ .
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~-~ 59 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---------------------QERDDDDMIADISNFLLK-H 59 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---------------------ccCCHHHHHHHHHHHHhC-C
Confidence 489999999999999999987632111234445552211 122334455555556655 4
Q ss_pred eEEEEEeCCC
Q 011568 245 KFVLILDDMW 254 (483)
Q Consensus 245 ~~LlVlDdv~ 254 (483)
+ .|+|+.-
T Consensus 60 ~--wIidg~~ 67 (171)
T PRK07261 60 D--WIIDGNY 67 (171)
T ss_pred C--EEEcCcc
Confidence 4 6778764
No 137
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.57 E-value=0.0041 Score=59.82 Aligned_cols=175 Identities=9% Similarity=0.044 Sum_probs=93.2
Q ss_pred HHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcc-----cC
Q 011568 150 IVKEIWEDLMGDK-VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQ-----SL 223 (483)
Q Consensus 150 ~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~-----~~ 223 (483)
.-+.+...+..+. ...+.++|+.|+||+++|..++..+..... .. ...++.-...+.+...-.. ..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~-~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTP-QG-------DQPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCC-CC-------CCCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 3456666666655 468889999999999999999988522110 00 0011111111111110000 00
Q ss_pred -CCCCCHHHHHHHHHHHHhc----CCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEEEecCC-hhHhhhcC--CceE
Q 011568 224 -PENEDKVSRAGRLLRMLKA----KEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLVITTRS-CRVCRSMK--CKQV 293 (483)
Q Consensus 224 -~~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ilvTtR~-~~v~~~~~--~~~~ 293 (483)
....-..+.++.+.+.+.. +++=++|+|+++... ....+.-.+-.-..++.+|++|.+ ..+..... +..+
T Consensus 82 ~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~ 161 (325)
T PRK06871 82 IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161 (325)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEE
Confidence 0001112333334443332 356688899998542 222222222222334555555554 34443322 3569
Q ss_pred eccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHH
Q 011568 294 EIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAI 340 (483)
Q Consensus 294 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 340 (483)
.+.+++.+++.+.+...... ....+...+..++|.|+.+
T Consensus 162 ~~~~~~~~~~~~~L~~~~~~--------~~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSSA--------EISEILTALRINYGRPLLA 200 (325)
T ss_pred eCCCCCHHHHHHHHHHHhcc--------ChHHHHHHHHHcCCCHHHH
Confidence 99999999999988876321 1223566788999999633
No 138
>PRK06526 transposase; Provisional
Probab=97.56 E-value=0.0016 Score=60.54 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..-+.|+|++|+|||+||..+.+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 4568999999999999999998874
No 139
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.56 E-value=0.0034 Score=64.43 Aligned_cols=198 Identities=15% Similarity=0.091 Sum_probs=119.7
Q ss_pred cccccchHHHHHHHHHHhc----C-CCceEEEEEcCCCCcHHHHHHHHHhhhccC--C---CCCCeEEEEEeCCCCCHHH
Q 011568 141 NLAGKRTGKIVKEIWEDLM----G-DKVSKIGVWGMGGIGKTTIMSNINNKLHEK--P---NKFNDVIWVTVSQPLDLIK 210 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~----~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~---~~f~~~~wv~~~~~~~~~~ 210 (483)
.+-+|+ .+..+|-.++. . +..+.+-|.|-+|+|||..+..|.+.+... + ..|+ -+.|+.-.-....+
T Consensus 397 sLpcRe--~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 397 SLPCRE--NEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred cccchh--HHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 366777 66666666553 3 234699999999999999999999975311 1 2343 24455555667999
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHh----cCCeEEEEEeCCCCccC-----ccccccCCCCCCCCcEEEEecC-
Q 011568 211 LQTEIATALKQSLPENEDKVSRAGRLLRMLK----AKEKFVLILDDMWEAFP-----LEEVGIPEPNEENGCKLVITTR- 280 (483)
Q Consensus 211 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~~~-----~~~l~~~l~~~~~~s~ilvTtR- 280 (483)
+...|..++.... ......+..|...+. ..+.+++++|+++.... +-.+.. +...++|+++|.+=
T Consensus 474 ~Y~~I~~~lsg~~---~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fd--Wpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 474 IYEKIWEALSGER---VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFD--WPTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHhcccCc---ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhc--CCcCCCCceEEEEec
Confidence 9999999987632 223344444444444 14789999999864211 111211 23356777655432
Q ss_pred C----------hhHhhhcCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHh
Q 011568 281 S----------CRVCRSMKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAAS 346 (483)
Q Consensus 281 ~----------~~v~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 346 (483)
+ ..++..++.+.+.+.|.+.++-.++...+..+...-.+...+-++++|+.-.|-.-.|+.+.-++
T Consensus 549 NTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 1 23455556677899999999999888887655422222223334555555555555555444433
No 140
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00048 Score=70.42 Aligned_cols=156 Identities=12% Similarity=0.065 Sum_probs=88.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCC--CCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQP--LDLIKLQTEIATALKQSLPENEDKVSRAGRLLRML 240 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 240 (483)
..-|.|.|+.|+|||+||+.+++.+. ++..-.+.+++++.- ..+..+++.+-. .+...+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~-----------------vfse~~ 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLNN-----------------VFSEAL 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHHH-----------------HHHHHH
Confidence 35688999999999999999999953 555666777777652 223333332222 223344
Q ss_pred hcCCeEEEEEeCCCCcc--------Cccc----cccCC-----CCCCCCcE--EEEecCChhHh-hhcC---C--ceEec
Q 011568 241 KAKEKFVLILDDMWEAF--------PLEE----VGIPE-----PNEENGCK--LVITTRSCRVC-RSMK---C--KQVEI 295 (483)
Q Consensus 241 ~~~~~~LlVlDdv~~~~--------~~~~----l~~~l-----~~~~~~s~--ilvTtR~~~v~-~~~~---~--~~~~l 295 (483)
.. .+.+|||||++... +|.. +...+ .....+.+ +|.|....... .... . ..+.|
T Consensus 492 ~~-~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L 570 (952)
T KOG0735|consen 492 WY-APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIAL 570 (952)
T ss_pred hh-CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEec
Confidence 44 89999999997321 1111 00000 01223333 44444432221 1111 1 24688
Q ss_pred cCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCc-hHHHH
Q 011568 296 ELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRL-PLAIV 341 (483)
Q Consensus 296 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~ 341 (483)
..+...+-.++++.......... ..+...-+..+|+|. |.-+.
T Consensus 571 ~ap~~~~R~~IL~~~~s~~~~~~---~~~dLd~ls~~TEGy~~~DL~ 614 (952)
T KOG0735|consen 571 PAPAVTRRKEILTTIFSKNLSDI---TMDDLDFLSVKTEGYLATDLV 614 (952)
T ss_pred CCcchhHHHHHHHHHHHhhhhhh---hhHHHHHHHHhcCCccchhHH
Confidence 99988888888776654432222 334455588888884 44333
No 141
>PHA00729 NTP-binding motif containing protein
Probab=97.53 E-value=0.00053 Score=61.78 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=28.3
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 153 EIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 153 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.++..+...+...|.|+|.+|+||||||..+.+.+
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555555666789999999999999999999873
No 142
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.50 E-value=0.015 Score=63.39 Aligned_cols=45 Identities=29% Similarity=0.353 Sum_probs=34.4
Q ss_pred cccccchHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 141 NLAGKRTGKIVKEIWEDLM------GDKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+|.+ +.++.|.+++. ....+++.++|++|+|||++|+.+++.+
T Consensus 321 ~~~G~~--~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 321 DHYGLK--KVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hcCChH--HHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 367776 66677766552 1234689999999999999999999983
No 143
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0042 Score=60.22 Aligned_cols=164 Identities=11% Similarity=0.103 Sum_probs=92.7
Q ss_pred HHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhhccCCC------------------CCCeEEEEEeCCCCCHHH
Q 011568 150 IVKEIWEDLMGDK-VSKIGVWGMGGIGKTTIMSNINNKLHEKPN------------------KFNDVIWVTVSQPLDLIK 210 (483)
Q Consensus 150 ~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~~~~~~~~~~ 210 (483)
.-+++...+.++. ...+.++|+.|+||+++|..++..+..... ..+...++.-...
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~----- 84 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG----- 84 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-----
Confidence 4456667776654 568889999999999999999887522110 1112222221100
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc----CCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEEEecC-Chh
Q 011568 211 LQTEIATALKQSLPENEDKVSRAGRLLRMLKA----KEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLVITTR-SCR 283 (483)
Q Consensus 211 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ilvTtR-~~~ 283 (483)
...-..+.++.+.+.+.. +++=++|+|+++... .-..+.-.+-.-..++.+|++|. ...
T Consensus 85 --------------~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~ 150 (334)
T PRK07993 85 --------------KSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPAR 150 (334)
T ss_pred --------------cccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence 000112233334443332 366799999997432 22222222211133455555554 444
Q ss_pred HhhhcC--CceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHH
Q 011568 284 VCRSMK--CKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAI 340 (483)
Q Consensus 284 v~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 340 (483)
+..... +..+.+.+++.+++.+.+..... . .++.+..++..++|.|...
T Consensus 151 lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~-----~---~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 151 LLATLRSRCRLHYLAPPPEQYALTWLSREVT-----M---SQDALLAALRLSAGAPGAA 201 (334)
T ss_pred ChHHHHhccccccCCCCCHHHHHHHHHHccC-----C---CHHHHHHHHHHcCCCHHHH
Confidence 443322 35689999999999988865421 1 2344678899999999644
No 144
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.47 E-value=0.0005 Score=63.56 Aligned_cols=91 Identities=15% Similarity=0.205 Sum_probs=56.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCC----CCeEEEEEeCCCCCHHHHHHHHHHHhcccCC------------CC
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNK----FNDVIWVTVSQPLDLIKLQTEIATALKQSLP------------EN 226 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~------------~~ 226 (483)
..++.|+|++|+|||+|+.+++.. ...... -..++|++....++..++. +++...+.... ..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~-~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVT-VQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-eeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCH
Confidence 579999999999999999999755 212221 2568999988776654443 33333332110 01
Q ss_pred CCHHHHHHHHHHHHhcC-CeEEEEEeCCCC
Q 011568 227 EDKVSRAGRLLRMLKAK-EKFVLILDDMWE 255 (483)
Q Consensus 227 ~~~~~~~~~l~~~l~~~-~~~LlVlDdv~~ 255 (483)
.+.......+...+... +.-|||+|.+..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 12223344555556554 788999999853
No 145
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.47 E-value=0.0035 Score=55.71 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=39.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+||-+ +.++.+.-...+++.+-+.|.||+|+||||-+..+++.+
T Consensus 27 ~dIVGNe--~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 27 QDIVGNE--DTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCCH--HHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 3589988 678887777788889999999999999999999888884
No 146
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0026 Score=60.20 Aligned_cols=177 Identities=12% Similarity=0.158 Sum_probs=98.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK 241 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (483)
..+=|.+||++|+|||-||++|+++ ... -|+.+..+ ++....-+ ....+...+++.-+
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~---T~A-----tFIrvvgS--------ElVqKYiG------EGaRlVRelF~lAr 241 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQ---TDA-----TFIRVVGS--------ELVQKYIG------EGARLVRELFELAR 241 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc---cCc-----eEEEeccH--------HHHHHHhc------cchHHHHHHHHHHh
Confidence 4677999999999999999999998 433 34444321 22222211 22456667777777
Q ss_pred cCCeEEEEEeCCCCcc------------C----ccccccCCC--CCCCCcEEEEecCChhHhhh----cCC--ceEeccC
Q 011568 242 AKEKFVLILDDMWEAF------------P----LEEVGIPEP--NEENGCKLVITTRSCRVCRS----MKC--KQVEIEL 297 (483)
Q Consensus 242 ~~~~~LlVlDdv~~~~------------~----~~~l~~~l~--~~~~~s~ilvTtR~~~v~~~----~~~--~~~~l~~ 297 (483)
.+.+++|++|.++... + +-++...+. +.....|||..|...++... .+- ..|+++.
T Consensus 242 ekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfpl 321 (406)
T COG1222 242 EKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPL 321 (406)
T ss_pred hcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCC
Confidence 7789999999987320 0 111111111 11345688887754333221 121 3477775
Q ss_pred CChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCch----HHHHHHHHhh--cCCC---ChHHHHHHHHHHh
Q 011568 298 LSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLP----LAIVTVAASM--SGEE---EIYEWQNALNELR 364 (483)
Q Consensus 298 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P----lai~~~~~~l--~~~~---~~~~w~~~l~~l~ 364 (483)
-+.+.-.++|+-+...-..... -..+.+++.|.|.- .|+.+=|+++ +... +.+.+..+.++..
T Consensus 322 Pd~~gR~~Il~IHtrkM~l~~d----vd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 322 PDEEGRAEILKIHTRKMNLADD----VDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred CCHHHHHHHHHHHhhhccCccC----cCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 5555556677666544422221 12556777777763 3444445554 3322 3455555555543
No 147
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.46 E-value=0.0046 Score=66.86 Aligned_cols=101 Identities=16% Similarity=0.272 Sum_probs=55.4
Q ss_pred cccccchHHHHHHHHHHhcC-------C--CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHH
Q 011568 141 NLAGKRTGKIVKEIWEDLMG-------D--KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKL 211 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 211 (483)
.++|.+ +.++.+...+.. . ...++.++|++|+|||+||+.+++.+ +...+.++.+.-....
T Consensus 455 ~v~GQ~--~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l------~~~~~~~d~se~~~~~-- 524 (731)
T TIGR02639 455 KIFGQD--EAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL------GVHLERFDMSEYMEKH-- 524 (731)
T ss_pred ceeCcH--HHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh------cCCeEEEeCchhhhcc--
Confidence 466766 455555555431 1 23468899999999999999999883 2234555554421110
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 011568 212 QTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWE 255 (483)
Q Consensus 212 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~ 255 (483)
.+...++.. +.... .+....+.+.+......+++||+++.
T Consensus 525 --~~~~lig~~-~gyvg-~~~~~~l~~~~~~~p~~VvllDEiek 564 (731)
T TIGR02639 525 --TVSRLIGAP-PGYVG-FEQGGLLTEAVRKHPHCVLLLDEIEK 564 (731)
T ss_pred --cHHHHhcCC-CCCcc-cchhhHHHHHHHhCCCeEEEEechhh
Confidence 111112221 11111 11122344555543567999999984
No 148
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00099 Score=68.29 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=81.6
Q ss_pred ccccchHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 011568 142 LAGKRTGKIVKEIWEDLM------GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEI 215 (483)
Q Consensus 142 ~vGr~~~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 215 (483)
-+|.+ +.+++|++++. +-+.++++++||+|+|||++|+.++..+. +. | +-++++.-.+..++-
T Consensus 413 HYgm~--dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--Rk-F---fRfSvGG~tDvAeIk--- 481 (906)
T KOG2004|consen 413 HYGME--DVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RK-F---FRFSVGGMTDVAEIK--- 481 (906)
T ss_pred ccchH--HHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--Cc-e---EEEeccccccHHhhc---
Confidence 56666 67888888872 23568999999999999999999999852 22 2 234455544443321
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhc--CCeEEEEEeCCCCc------------------cCccccccCCCCC-CCCcE
Q 011568 216 ATALKQSLPENEDKVSRAGRLLRMLKA--KEKFVLILDDMWEA------------------FPLEEVGIPEPNE-ENGCK 274 (483)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~~LlVlDdv~~~------------------~~~~~l~~~l~~~-~~~s~ 274 (483)
|+.- .-....-.++.+.|+. -.+-|+.||.|+.. ++-..|...+.+- -.=|+
T Consensus 482 ----GHRR---TYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 482 ----GHRR---TYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred ----ccce---eeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhh
Confidence 1100 0001111234444443 25668889998732 1111111111110 11256
Q ss_pred EEEecCChhHhhhcCC-----ceEeccCCChHHHHHHHHHhh
Q 011568 275 LVITTRSCRVCRSMKC-----KQVEIELLSKKEALNLFIDKV 311 (483)
Q Consensus 275 ilvTtR~~~v~~~~~~-----~~~~l~~L~~~ea~~Lf~~~~ 311 (483)
|++.+.-+.+...... ..|++.+...+|=..+-.++.
T Consensus 555 VLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred eEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 6543332222222111 347888888888777666554
No 149
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.45 E-value=0.00098 Score=59.43 Aligned_cols=88 Identities=19% Similarity=0.268 Sum_probs=58.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcccC---CCCCCHHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQSL---PENEDKVSRAGRLLR 238 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~---~~~~~~~~~~~~l~~ 238 (483)
+++|.++|+.|+||||.+.+++..+... -..+..++... .....+-++...+.++.+. ....+.........+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 3689999999999999999988884322 33477777754 4567788888899988753 223345555554444
Q ss_pred HHhcCCeEEEEEeCC
Q 011568 239 MLKAKEKFVLILDDM 253 (483)
Q Consensus 239 ~l~~~~~~LlVlDdv 253 (483)
.+..++.=++++|-.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 454424558888876
No 150
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.44 E-value=0.0029 Score=68.35 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=36.0
Q ss_pred cccccchHHHHHHHHHHhcC------CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 141 NLAGKRTGKIVKEIWEDLMG------DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+|.+ +.++.|++++.. ....++.++|++|+||||+++.++..
T Consensus 323 ~~~g~~--~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~ 372 (784)
T PRK10787 323 DHYGLE--RVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA 372 (784)
T ss_pred hccCHH--HHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 477877 778888877742 24578999999999999999999987
No 151
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.44 E-value=0.00083 Score=60.85 Aligned_cols=48 Identities=21% Similarity=0.426 Sum_probs=37.1
Q ss_pred ccccccccchHHHHHHHH----HHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 138 TTRNLAGKRTGKIVKEIW----EDLMGDKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 138 ~~~~~vGr~~~~~~~~l~----~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
....++|.+ +.++.|+ .++......-+.++|..|+|||+|++.+.+.+
T Consensus 25 ~l~~L~Gie--~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 25 RLDDLIGIE--RQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred CHHHhcCHH--HHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 345699988 4555544 45566667788899999999999999999884
No 152
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.034 Score=54.63 Aligned_cols=150 Identities=15% Similarity=0.129 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAK 243 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 243 (483)
+=-.++||+|+|||+++.++++.+ .|+ +.=+..+...+- .+ .++|.... .
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~yd-IydLeLt~v~~n---------------------~d-Lr~LL~~t--~ 285 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYD-IYDLELTEVKLD---------------------SD-LRHLLLAT--P 285 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCc-eEEeeeccccCc---------------------HH-HHHHHHhC--C
Confidence 447799999999999999999983 343 222333222111 11 22222111 3
Q ss_pred CeEEEEEeCCCCccCc-----------c---------ccccC---CCCCCCCcEE-EEecCChhHhh----hcCC--ceE
Q 011568 244 EKFVLILDDMWEAFPL-----------E---------EVGIP---EPNEENGCKL-VITTRSCRVCR----SMKC--KQV 293 (483)
Q Consensus 244 ~~~LlVlDdv~~~~~~-----------~---------~l~~~---l~~~~~~s~i-lvTtR~~~v~~----~~~~--~~~ 293 (483)
.+.+||+.|++...++ + .+... +...+.+-|| ++||...+-.. ..+. .++
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 6888999998743111 1 01111 1111222345 56775433211 1111 357
Q ss_pred eccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHh-hcC
Q 011568 294 EIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAAS-MSG 349 (483)
Q Consensus 294 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~-l~~ 349 (483)
.+.-=+.+.-..|+........+ ..+..+|.+...|.-+.-..++.. |..
T Consensus 366 ~mgyCtf~~fK~La~nYL~~~~~------h~L~~eie~l~~~~~~tPA~V~e~lm~~ 416 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLGIEED------HRLFDEIERLIEETEVTPAQVAEELMKN 416 (457)
T ss_pred EcCCCCHHHHHHHHHHhcCCCCC------cchhHHHHHHhhcCccCHHHHHHHHhhc
Confidence 88888999999999988766431 124555555555655544555554 444
No 153
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.44 E-value=0.00094 Score=61.29 Aligned_cols=89 Identities=10% Similarity=0.112 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC------CeEEEEEeCCCCCHHHHHHHHHHHhcccC---------CCCC
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKF------NDVIWVTVSQPLDLIKLQTEIATALKQSL---------PENE 227 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~il~~l~~~~---------~~~~ 227 (483)
..++.|+|++|+|||+|+.+++... ...- ..++|++....++...+. .+....+... ....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 5799999999999999999998762 1122 457899987776654443 3333322110 0112
Q ss_pred CHHHHHHHHHHHHh---cCCeEEEEEeCCCC
Q 011568 228 DKVSRAGRLLRMLK---AKEKFVLILDDMWE 255 (483)
Q Consensus 228 ~~~~~~~~l~~~l~---~~~~~LlVlDdv~~ 255 (483)
+.++....+..... ..+.-|+|+|.+..
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 34444444444433 44667999999853
No 154
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.025 Score=54.26 Aligned_cols=181 Identities=10% Similarity=0.108 Sum_probs=98.8
Q ss_pred HHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhhccCCC-----------------CCCeEEEEEeCCCCCHHHH
Q 011568 150 IVKEIWEDLMGDK-VSKIGVWGMGGIGKTTIMSNINNKLHEKPN-----------------KFNDVIWVTVSQPLDLIKL 211 (483)
Q Consensus 150 ~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----------------~f~~~~wv~~~~~~~~~~~ 211 (483)
..+.+...+..+. ...+.++|+.|+||+++|..++..+..... ..+...|+.-...
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~------ 84 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE------ 84 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC------
Confidence 4456666666655 468999999999999999999887522111 1122233321100
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhc----CCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEEEec-CChhH
Q 011568 212 QTEIATALKQSLPENEDKVSRAGRLLRMLKA----KEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLVITT-RSCRV 284 (483)
Q Consensus 212 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ilvTt-R~~~v 284 (483)
..... .+.++.+.+.+.. ++.=++|+|+++... ....+.-.+-.-..++.+|++| ....+
T Consensus 85 ------------~~~I~-vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~l 151 (319)
T PRK06090 85 ------------GKSIT-VEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRL 151 (319)
T ss_pred ------------CCcCC-HHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhC
Confidence 00011 1222333333321 356688999998532 2222222221113345555544 44444
Q ss_pred hhhcC--CceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHhhcCCCChHHHHHHHHH
Q 011568 285 CRSMK--CKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAASMSGEEEIYEWQNALNE 362 (483)
Q Consensus 285 ~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l~~ 362 (483)
..... +..+.+.+++.+++.+.+..... . ....++..++|.|+.+..+ +.. .....++..+..
T Consensus 152 LpTI~SRCq~~~~~~~~~~~~~~~L~~~~~----------~-~~~~~l~l~~G~p~~A~~~---~~~-~~~~~~~~~~~~ 216 (319)
T PRK06090 152 LPTIVSRCQQWVVTPPSTAQAMQWLKGQGI----------T-VPAYALKLNMGSPLKTLAM---MKE-GGLEKYHKLERQ 216 (319)
T ss_pred hHHHHhcceeEeCCCCCHHHHHHHHHHcCC----------c-hHHHHHHHcCCCHHHHHHH---hCC-CcHHHHHHHHHH
Confidence 43332 35689999999999998876421 1 2346788999999866544 222 333444444444
Q ss_pred Hh
Q 011568 363 LR 364 (483)
Q Consensus 363 l~ 364 (483)
+.
T Consensus 217 l~ 218 (319)
T PRK06090 217 LV 218 (319)
T ss_pred HH
Confidence 43
No 155
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.41 E-value=0.0047 Score=67.88 Aligned_cols=104 Identities=15% Similarity=0.274 Sum_probs=56.7
Q ss_pred cccccchHHHHHHHHHHhcC-------C--CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHH
Q 011568 141 NLAGKRTGKIVKEIWEDLMG-------D--KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKL 211 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 211 (483)
.++|.+ ..++.+...+.. . ...++.++|++|+|||++|+.+...+. ..-...+.++++.-.... .
T Consensus 566 ~v~GQ~--~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~---~~~~~~i~~d~s~~~~~~-~ 639 (852)
T TIGR03346 566 RVVGQD--EAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF---DDEDAMVRIDMSEYMEKH-S 639 (852)
T ss_pred ccCCCh--HHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc---CCCCcEEEEechhhcccc-h
Confidence 478887 566666666532 1 235688999999999999999998731 222234445544322111 1
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 011568 212 QTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWE 255 (483)
Q Consensus 212 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~ 255 (483)
. ..-+|.+ +...... ....+...+......+|+||+++.
T Consensus 640 ~---~~l~g~~-~g~~g~~-~~g~l~~~v~~~p~~vlllDeiek 678 (852)
T TIGR03346 640 V---ARLIGAP-PGYVGYE-EGGQLTEAVRRKPYSVVLFDEVEK 678 (852)
T ss_pred H---HHhcCCC-CCccCcc-cccHHHHHHHcCCCcEEEEecccc
Confidence 1 1112221 1111111 112344444443456999999974
No 156
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.00054 Score=69.22 Aligned_cols=186 Identities=14% Similarity=0.194 Sum_probs=108.1
Q ss_pred ccccccchHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDK-VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
+++||.+ .....|...+..+. ..-....|+-|+||||+|+-++..+..... ....+++.-...++|...
T Consensus 16 ~evvGQe--~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~--------~~~ePC~~C~~Ck~I~~g 85 (515)
T COG2812 16 DDVVGQE--HVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG--------PTAEPCGKCISCKEINEG 85 (515)
T ss_pred HHhcccH--HHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC--------CCCCcchhhhhhHhhhcC
Confidence 3589988 67777877777664 456788999999999999999987522210 112233333333444332
Q ss_pred hcccCC----CCCCHHHHHHHHHHHHhc----CCeEEEEEeCCC--CccCccccccCCCCCCCCcEEE-EecCChhHhhh
Q 011568 219 LKQSLP----ENEDKVSRAGRLLRMLKA----KEKFVLILDDMW--EAFPLEEVGIPEPNEENGCKLV-ITTRSCRVCRS 287 (483)
Q Consensus 219 l~~~~~----~~~~~~~~~~~l~~~l~~----~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~~s~il-vTtR~~~v~~~ 287 (483)
-..+.- ...+..+-.+.+.+...- ++.=+.|+|.|+ +...+..+.-.+-.-....+.| .||-...+...
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 000000 001112223333333322 355589999997 3444554433332222344444 45544444322
Q ss_pred --cCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchH
Q 011568 288 --MKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPL 338 (483)
Q Consensus 288 --~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 338 (483)
..+..|.+..++.++....+...+....... .++....|++..+|...
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~---e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI---EEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCcc---CHHHHHHHHHHcCCChh
Confidence 2235689999999999999988876665444 56777888888888543
No 157
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0068 Score=64.07 Aligned_cols=102 Identities=17% Similarity=0.322 Sum_probs=59.5
Q ss_pred cccccchHHHHHHHHHHhc-------CC--CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHH
Q 011568 141 NLAGKRTGKIVKEIWEDLM-------GD--KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKL 211 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~-------~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 211 (483)
.++|.+ +.+..+.+.+. +. ...+....||.|+|||-||+.++..+. +.=+..+-++.|. .
T Consensus 492 rViGQd--~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf---g~e~aliR~DMSE------y 560 (786)
T COG0542 492 RVIGQD--EAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF---GDEQALIRIDMSE------Y 560 (786)
T ss_pred ceeChH--HHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc---CCCccceeechHH------H
Confidence 388887 56666666552 22 346778899999999999999998841 1113334444332 2
Q ss_pred HH-HHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeE-EEEEeCCCC
Q 011568 212 QT-EIATALKQSLPENEDKVSRAGRLLRMLKAKEKF-VLILDDMWE 255 (483)
Q Consensus 212 ~~-~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~-LlVlDdv~~ 255 (483)
.. .-+..|-+..|.--..++ ...|-+..+. ++| +|.||+++.
T Consensus 561 ~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr-~PySViLlDEIEK 604 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRR-KPYSVILLDEIEK 604 (786)
T ss_pred HHHHHHHHHhCCCCCCceecc-ccchhHhhhc-CCCeEEEechhhh
Confidence 21 122333333332222222 4456666777 555 999999973
No 158
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.35 E-value=0.002 Score=58.22 Aligned_cols=171 Identities=16% Similarity=0.227 Sum_probs=95.5
Q ss_pred ccccccchHH-HHHHHHHHhcCC------CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHH
Q 011568 140 RNLAGKRTGK-IVKEIWEDLMGD------KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQ 212 (483)
Q Consensus 140 ~~~vGr~~~~-~~~~l~~~L~~~------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 212 (483)
+.+||.+..+ ...-|++.|.+. ..+-|..+|++|.|||.+|+.+++. .+ -.| +-|... ++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane-~k--vp~---l~vkat------~l- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE-AK--VPL---LLVKAT------EL- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc-cC--Cce---EEechH------HH-
Confidence 3578877432 234466777664 3678999999999999999999998 22 222 222211 11
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc--------------cCccccccCCC--CCCCCcEEE
Q 011568 213 TEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEA--------------FPLEEVGIPEP--NEENGCKLV 276 (483)
Q Consensus 213 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--------------~~~~~l~~~l~--~~~~~s~il 276 (483)
|-+. ..+....+..+.+.-..--+|++.+|.++.. +..+.+...+. ..+.|...|
T Consensus 188 --iGeh-------VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 188 --IGEH-------VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred --HHHH-------hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 1111 1223344455555544458999999998732 11111211111 234454445
Q ss_pred EecCChhHhhh-cCC---ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCc
Q 011568 277 ITTRSCRVCRS-MKC---KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRL 336 (483)
Q Consensus 277 vTtR~~~v~~~-~~~---~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 336 (483)
-.|.+...... ... ..|+..--+++|-..++..++..-..+. +...+.++++.+|+
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv----~~~~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV----DADLRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc----ccCHHHHHHHhCCC
Confidence 55544333221 111 2366666678888888888775443332 23366778888776
No 159
>PRK12377 putative replication protein; Provisional
Probab=97.34 E-value=0.00029 Score=65.01 Aligned_cols=73 Identities=25% Similarity=0.351 Sum_probs=46.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
...+.|+|++|+|||+||..+++.+. .....++++++. +++..+-..... .... ..+.+.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~----~~~l~~l~- 162 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP------DVMSRLHESYDN----GQSG----EKFLQELC- 162 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH------HHHHHHHHHHhc----cchH----HHHHHHhc-
Confidence 46799999999999999999999953 223345666643 444444333221 1111 12333443
Q ss_pred CCeEEEEEeCCC
Q 011568 243 KEKFVLILDDMW 254 (483)
Q Consensus 243 ~~~~LlVlDdv~ 254 (483)
+.-||||||+.
T Consensus 163 -~~dLLiIDDlg 173 (248)
T PRK12377 163 -KVDLLVLDEIG 173 (248)
T ss_pred -CCCEEEEcCCC
Confidence 57799999994
No 160
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.33 E-value=0.0021 Score=60.35 Aligned_cols=166 Identities=21% Similarity=0.252 Sum_probs=96.1
Q ss_pred cccccchHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCC-HHHHHHHH
Q 011568 141 NLAGKRTGKIVKEIWEDLM----GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLD-LIKLQTEI 215 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 215 (483)
+++|-. ++..++-.++. -++..-+.|+||.|.|||+|......+...+..+| +-|......- -.-.++.|
T Consensus 25 ~l~g~~--~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQ--DEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehH--HHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHH
Confidence 377776 45555555443 24556788999999999999988877633333333 3344433222 22345666
Q ss_pred HHHhccc----CCCCCCHHHHHHHHHHHHhc-----CCeEEEEEeCCCCccC-------ccccccCCCCCCCCcEEEEec
Q 011568 216 ATALKQS----LPENEDKVSRAGRLLRMLKA-----KEKFVLILDDMWEAFP-------LEEVGIPEPNEENGCKLVITT 279 (483)
Q Consensus 216 l~~l~~~----~~~~~~~~~~~~~l~~~l~~-----~~~~LlVlDdv~~~~~-------~~~l~~~l~~~~~~s~ilvTt 279 (483)
.+|+... .....+..+....+...|+. +.++++|+|.++-... +..+...-....+-|.|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 6665432 22223444555666666665 3568999998863211 111111111234557788999
Q ss_pred CCh-------hHhhhcCCceE-eccCCChHHHHHHHHHhh
Q 011568 280 RSC-------RVCRSMKCKQV-EIELLSKKEALNLFIDKV 311 (483)
Q Consensus 280 R~~-------~v~~~~~~~~~-~l~~L~~~ea~~Lf~~~~ 311 (483)
|-. .|-...+...+ -++.++-++-..++++..
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 963 33344455544 556688889999988876
No 161
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.32 E-value=0.00081 Score=61.71 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=51.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH--------hcccCC-CCCCHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATA--------LKQSLP-ENEDKVSRA 233 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~--------l~~~~~-~~~~~~~~~ 233 (483)
..++.|+|++|+|||++|.+++.... ..-..++|++.. .++...+. ++... +....+ ...+.....
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 97 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEAI 97 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHHH
Confidence 57999999999999999999988732 223568999987 55544432 23221 111111 001112233
Q ss_pred HHHHHHHhcCCeEEEEEeCCC
Q 011568 234 GRLLRMLKAKEKFVLILDDMW 254 (483)
Q Consensus 234 ~~l~~~l~~~~~~LlVlDdv~ 254 (483)
..+...+.. +.-++|+|.+.
T Consensus 98 ~~~~~~~~~-~~~lvVIDsi~ 117 (225)
T PRK09361 98 RKAEKLAKE-NVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHh-cccEEEEeCcH
Confidence 344444444 77899999974
No 162
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.31 E-value=0.001 Score=67.66 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=78.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
.+-|.++|++|+|||.+|+.+++.+ .-.| +-++.+. + .. .. ....+.....+.+....
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~~------l----~~----~~--vGese~~l~~~f~~A~~ 316 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVGK------L----FG----GI--VGESESRMRQMIRIAEA 316 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhHH------h----cc----cc--cChHHHHHHHHHHHHHh
Confidence 4668999999999999999999982 2221 2222211 1 00 00 01122333344443333
Q ss_pred CCeEEEEEeCCCCccC----c----------cccccCCCCCCCCcEEEEecCChhH-hhhc----CC-ceEeccCCChHH
Q 011568 243 KEKFVLILDDMWEAFP----L----------EEVGIPEPNEENGCKLVITTRSCRV-CRSM----KC-KQVEIELLSKKE 302 (483)
Q Consensus 243 ~~~~LlVlDdv~~~~~----~----------~~l~~~l~~~~~~s~ilvTtR~~~v-~~~~----~~-~~~~l~~L~~~e 302 (483)
..+++|++|+++.... . ..+...+.....+..||.||..... ...+ .. ..+.++.-+.++
T Consensus 317 ~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~e 396 (489)
T CHL00195 317 LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEE 396 (489)
T ss_pred cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHH
Confidence 4899999999974211 0 0011111112233345556654321 1111 11 346788778888
Q ss_pred HHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCc
Q 011568 303 ALNLFIDKVGSSILQVPTLNEGIINEVVEECGRL 336 (483)
Q Consensus 303 a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 336 (483)
-.++|..+......... .......+++.+.|.
T Consensus 397 R~~Il~~~l~~~~~~~~--~~~dl~~La~~T~Gf 428 (489)
T CHL00195 397 REKIFKIHLQKFRPKSW--KKYDIKKLSKLSNKF 428 (489)
T ss_pred HHHHHHHHHhhcCCCcc--cccCHHHHHhhcCCC
Confidence 88998877654321110 112355677777664
No 163
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.30 E-value=0.0022 Score=69.46 Aligned_cols=149 Identities=13% Similarity=0.207 Sum_probs=79.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
.+-|.++|++|+|||+||+.+++. ....| +.+... +++... ....+.....+......
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e---~~~~f-----i~v~~~--------~l~~~~------vGese~~i~~~f~~A~~ 544 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATE---SGANF-----IAVRGP--------EILSKW------VGESEKAIREIFRKARQ 544 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh---cCCCE-----EEEehH--------HHhhcc------cCcHHHHHHHHHHHHHh
Confidence 455889999999999999999998 22222 222211 111111 11123334444444444
Q ss_pred CCeEEEEEeCCCCccC--------------ccccccCCCC--CCCCcEEEEecCChhHhh-h-c---CC-ceEeccCCCh
Q 011568 243 KEKFVLILDDMWEAFP--------------LEEVGIPEPN--EENGCKLVITTRSCRVCR-S-M---KC-KQVEIELLSK 300 (483)
Q Consensus 243 ~~~~LlVlDdv~~~~~--------------~~~l~~~l~~--~~~~s~ilvTtR~~~v~~-~-~---~~-~~~~l~~L~~ 300 (483)
..+++|+||+++.... ...+...+.. ...+..||.||....... . . .. ..+.++..+.
T Consensus 545 ~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~ 624 (733)
T TIGR01243 545 AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE 624 (733)
T ss_pred cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence 4789999999863210 0111111111 123444555664433221 1 1 11 3478888888
Q ss_pred HHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCch
Q 011568 301 KEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLP 337 (483)
Q Consensus 301 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 337 (483)
++-.++|+.+........ ......+++.+.|.-
T Consensus 625 ~~R~~i~~~~~~~~~~~~----~~~l~~la~~t~g~s 657 (733)
T TIGR01243 625 EARKEIFKIHTRSMPLAE----DVDLEELAEMTEGYT 657 (733)
T ss_pred HHHHHHHHHHhcCCCCCc----cCCHHHHHHHcCCCC
Confidence 999999876654332211 112566777887753
No 164
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.28 E-value=0.00074 Score=64.53 Aligned_cols=85 Identities=13% Similarity=0.192 Sum_probs=55.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccC-----CCCCCHHHHHHHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSL-----PENEDKVSRAGRL 236 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l 236 (483)
..+++-|+|++|+||||||.+++.... ..-..++|++....++.. .+.+++... ....+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 357999999999999999999887732 223457899887655542 344444321 1123445555555
Q ss_pred HHHHhcCCeEEEEEeCCC
Q 011568 237 LRMLKAKEKFVLILDDMW 254 (483)
Q Consensus 237 ~~~l~~~~~~LlVlDdv~ 254 (483)
...+..+..-+||+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 555555577899999985
No 165
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.28 E-value=0.0019 Score=55.64 Aligned_cols=40 Identities=28% Similarity=0.448 Sum_probs=30.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCC
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLD 207 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 207 (483)
++.|+|++|+||||++..+..... ..-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA---TKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH---hcCCEEEEEECCcchH
Confidence 468999999999999999988832 2334578888766543
No 166
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.28 E-value=0.0011 Score=68.53 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=36.6
Q ss_pred cccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 141 NLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+++|.+ ..++.+...+......-+.|+|++|+|||++|+.+++.
T Consensus 66 ~iiGqs--~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQE--EGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcH--HHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 489988 67788777776665667789999999999999999875
No 167
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.27 E-value=0.00023 Score=58.21 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+|.|.|++|+||||+|+.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999983
No 168
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.003 Score=66.17 Aligned_cols=174 Identities=16% Similarity=0.169 Sum_probs=100.8
Q ss_pred cccccchH-HHHHHHHHHhcCCC---------ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHH
Q 011568 141 NLAGKRTG-KIVKEIWEDLMGDK---------VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIK 210 (483)
Q Consensus 141 ~~vGr~~~-~~~~~l~~~L~~~~---------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 210 (483)
++.|-+.. .++.+++.+|.++. ++=+.++||+|+|||-||++++-. .. +=|++++.. +
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE-Ag-------VPF~svSGS----E 379 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE-AG-------VPFFSVSGS----E 379 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcc-cC-------CceeeechH----H
Confidence 46666533 67788888887742 455889999999999999999987 22 224444432 1
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-----------------ccccccCCCCCC--C
Q 011568 211 LQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP-----------------LEEVGIPEPNEE--N 271 (483)
Q Consensus 211 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-----------------~~~l~~~l~~~~--~ 271 (483)
.++.+... .....+.|...-+...++++.+|+++...- +.++...+.... .
T Consensus 380 ----FvE~~~g~------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 380 ----FVEMFVGV------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ----HHHHhccc------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 11211111 134555566666666899999999874311 111111111111 2
Q ss_pred CcEEEEecCChhHhhh----cCC--ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHH
Q 011568 272 GCKLVITTRSCRVCRS----MKC--KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLA 339 (483)
Q Consensus 272 ~s~ilvTtR~~~v~~~----~~~--~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 339 (483)
+..++-+|...++... .+- ..+.++.-+...-.++|.-++....... ...+..+ |+...-|.+=|
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~--e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDD--EDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCc--chhhHHH-HHhcCCCCcHH
Confidence 2223334443333221 111 3477887888888899988876654331 1344555 88888888743
No 169
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.26 E-value=0.0022 Score=69.53 Aligned_cols=169 Identities=13% Similarity=0.201 Sum_probs=86.1
Q ss_pred cccccchHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCC
Q 011568 141 NLAGKRTGKIVKEIWEDLMG-------------DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLD 207 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 207 (483)
.+.|.+ +.++.+.+.+.. ...+-|.++|++|+|||+||+.+++.+ ...| +.++.+.
T Consensus 179 di~G~~--~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~~--- 247 (733)
T TIGR01243 179 DIGGLK--EAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGPE--- 247 (733)
T ss_pred HhcCHH--HHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecHH---
Confidence 466776 555555554421 224668899999999999999999882 2221 2232211
Q ss_pred HHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------ccccccCCCC-CCCCc
Q 011568 208 LIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP-------------LEEVGIPEPN-EENGC 273 (483)
Q Consensus 208 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~~~l~~-~~~~s 273 (483)
+ .... ..........+.+......+.+|+||+++.... ...+...+.. ...+.
T Consensus 248 ---i----~~~~------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 248 ---I----MSKY------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred ---H----hccc------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 1 0000 011122333334333333778999999864210 1111111111 12233
Q ss_pred EEEE-ecCChh-Hhhhc---C-C-ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCch
Q 011568 274 KLVI-TTRSCR-VCRSM---K-C-KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLP 337 (483)
Q Consensus 274 ~ilv-TtR~~~-v~~~~---~-~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 337 (483)
.++| ||.... +.... + . ..+.+...+.++-.+++........... ......+++.+.|..
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~----d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE----DVDLDKLAEVTHGFV 381 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc----ccCHHHHHHhCCCCC
Confidence 3444 443322 21111 1 1 3477777888888888886543322111 123567888888764
No 170
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.23 E-value=0.00014 Score=63.88 Aligned_cols=72 Identities=33% Similarity=0.448 Sum_probs=42.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
..-+.|+|++|+|||.||..+.+.+.. ..+ .+.|++. .+++.. +..... .... ..+.+.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~--~g~-~v~f~~~------~~L~~~----l~~~~~-~~~~----~~~~~~l~- 107 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR--KGY-SVLFITA------SDLLDE----LKQSRS-DGSY----EELLKRLK- 107 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH--TT---EEEEEH------HHHHHH----HHCCHC-CTTH----CHHHHHHH-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc--CCc-ceeEeec------Cceecc----cccccc-ccch----hhhcCccc-
Confidence 467999999999999999999988532 223 3566663 334433 332211 1121 12334444
Q ss_pred CCeEEEEEeCCC
Q 011568 243 KEKFVLILDDMW 254 (483)
Q Consensus 243 ~~~~LlVlDdv~ 254 (483)
+.=||||||+-
T Consensus 108 -~~dlLilDDlG 118 (178)
T PF01695_consen 108 -RVDLLILDDLG 118 (178)
T ss_dssp -TSSCEEEETCT
T ss_pred -cccEecccccc
Confidence 35688899985
No 171
>PRK09354 recA recombinase A; Provisional
Probab=97.22 E-value=0.001 Score=64.16 Aligned_cols=85 Identities=12% Similarity=0.180 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccC-----CCCCCHHHHHHHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSL-----PENEDKVSRAGRL 236 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l 236 (483)
..+++-|+|++|+|||||+.+++.... ..-..++|+.....++.. .+++++... ....+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~---~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 357999999999999999999887722 223568899988776652 344444321 1123445555555
Q ss_pred HHHHhcCCeEEEEEeCCC
Q 011568 237 LRMLKAKEKFVLILDDMW 254 (483)
Q Consensus 237 ~~~l~~~~~~LlVlDdv~ 254 (483)
...+..+..-+||+|.+-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 555555577899999985
No 172
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.22 E-value=0.0013 Score=60.03 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=31.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCC
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLD 207 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 207 (483)
..++.|.|++|+||||++.+++.... ..-..++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCCH
Confidence 57899999999999999999988732 2233578887655443
No 173
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.21 E-value=0.0011 Score=63.49 Aligned_cols=84 Identities=15% Similarity=0.186 Sum_probs=55.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccC-----CCCCCHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSL-----PENEDKVSRAGRLL 237 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l~ 237 (483)
.+++-|+|++|+||||||.+++.... ..-..++|++....++.. .+.+++... ....+.++....+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~---~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQ---KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 57899999999999999999887622 223458899987766542 333443311 11224455555555
Q ss_pred HHHhcCCeEEEEEeCCC
Q 011568 238 RMLKAKEKFVLILDDMW 254 (483)
Q Consensus 238 ~~l~~~~~~LlVlDdv~ 254 (483)
..+..+..-+||+|.+-
T Consensus 127 ~li~s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHhccCCCEEEEcchH
Confidence 55555577899999975
No 174
>PRK04132 replication factor C small subunit; Provisional
Probab=97.21 E-value=0.0063 Score=65.54 Aligned_cols=152 Identities=9% Similarity=0.117 Sum_probs=90.1
Q ss_pred Ec--CCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCe
Q 011568 169 WG--MGGIGKTTIMSNINNKLHEKPNKFN-DVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEK 245 (483)
Q Consensus 169 ~G--~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 245 (483)
.| |.++||||+|..+++++. ...+. .++-++.+...+.. ..++++..+....+ +.+.+.
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~--g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~---------------~~~~~~ 631 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELF--GENWRHNFLELNASDERGIN-VIREKVKEFARTKP---------------IGGASF 631 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhh--cccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCC---------------cCCCCC
Confidence 46 889999999999999841 12232 35667777644444 34444443322111 011145
Q ss_pred EEEEEeCCCCcc--CccccccCCCCCCCCcEEEEecC-ChhHhhhc--CCceEeccCCChHHHHHHHHHhhCCCCCCCCC
Q 011568 246 FVLILDDMWEAF--PLEEVGIPEPNEENGCKLVITTR-SCRVCRSM--KCKQVEIELLSKKEALNLFIDKVGSSILQVPT 320 (483)
Q Consensus 246 ~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ilvTtR-~~~v~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~ 320 (483)
-++|||+++... ....+...+-.-...+++|++|. ...+.... .+..+.+.+++.++....+...+.......
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i-- 709 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL-- 709 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC--
Confidence 799999998543 33333322222223455555554 33333222 235689999999999988877654332222
Q ss_pred cchHHHHHHHHHcCCchHHHH
Q 011568 321 LNEGIINEVVEECGRLPLAIV 341 (483)
Q Consensus 321 ~~~~~~~~i~~~~~G~Plai~ 341 (483)
.++....|++.|+|.+..+.
T Consensus 710 -~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 710 -TEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred -CHHHHHHHHHHcCCCHHHHH
Confidence 45678999999999885443
No 175
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.21 E-value=0.007 Score=66.33 Aligned_cols=46 Identities=15% Similarity=0.309 Sum_probs=33.9
Q ss_pred ccccccchHHHHHHHHHHhcC-------C--CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 140 RNLAGKRTGKIVKEIWEDLMG-------D--KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..++|.+ ..++.+...+.. . ....+.++|+.|+|||+||+.+++.+
T Consensus 509 ~~v~GQ~--~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQD--EAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcChH--HHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 3488887 566666665531 1 13457799999999999999999874
No 176
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.017 Score=55.96 Aligned_cols=89 Identities=15% Similarity=0.208 Sum_probs=52.2
Q ss_pred CeEEEEEeCCCCc--cCccccccCCCCCCCCcEE-EEecCChhHhhhcC--CceEeccCCChHHHHHHHHHhhCCCCCCC
Q 011568 244 EKFVLILDDMWEA--FPLEEVGIPEPNEENGCKL-VITTRSCRVCRSMK--CKQVEIELLSKKEALNLFIDKVGSSILQV 318 (483)
Q Consensus 244 ~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~i-lvTtR~~~v~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 318 (483)
++-++|+|+++.. .....+...+-.-.+++.+ ++|++...+..... +..+.+.+++.++..+.+.... .+.
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~~ 207 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VAD 207 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CCh
Confidence 5568899999853 2233332222222334544 45555454443322 3568999999999999987752 111
Q ss_pred CCcchHHHHHHHHHcCCchHHHHHH
Q 011568 319 PTLNEGIINEVVEECGRLPLAIVTV 343 (483)
Q Consensus 319 ~~~~~~~~~~i~~~~~G~Plai~~~ 343 (483)
...++..++|.|..+..+
T Consensus 208 -------~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 208 -------ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -------HHHHHHHcCCCHHHHHHH
Confidence 223577889999755433
No 177
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.20 E-value=0.0026 Score=54.97 Aligned_cols=133 Identities=15% Similarity=0.213 Sum_probs=70.6
Q ss_pred HHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCC-----------------CCCCeEEEEEeCCC---CC
Q 011568 149 KIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKP-----------------NKFNDVIWVTVSQP---LD 207 (483)
Q Consensus 149 ~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-----------------~~f~~~~wv~~~~~---~~ 207 (483)
+..+.|...+..+.. ..+.++|+.|+||+++|..+++.+.... ...+...|+.-... ..
T Consensus 4 ~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~ 83 (162)
T PF13177_consen 4 EIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIK 83 (162)
T ss_dssp HHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBS
T ss_pred HHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhh
Confidence 566777777777765 5789999999999999999998762221 12344555543332 22
Q ss_pred HHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEEecCChh-H
Q 011568 208 LIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVITTRSCR-V 284 (483)
Q Consensus 208 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilvTtR~~~-v 284 (483)
++++. ++...+..... . ++.=++|+|+++.. .....+.-.+-....++.+|++|.+.. +
T Consensus 84 i~~ir-~i~~~~~~~~~----------------~-~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~i 145 (162)
T PF13177_consen 84 IDQIR-EIIEFLSLSPS----------------E-GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKI 145 (162)
T ss_dssp HHHHH-HHHHHCTSS-T----------------T-SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS
T ss_pred HHHHH-HHHHHHHHHHh----------------c-CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHC
Confidence 22222 44443332211 1 25778999999853 223333222222245778887777643 2
Q ss_pred hhhc--CCceEeccCCC
Q 011568 285 CRSM--KCKQVEIELLS 299 (483)
Q Consensus 285 ~~~~--~~~~~~l~~L~ 299 (483)
.... .+..+.+.+++
T Consensus 146 l~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 146 LPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -HHHHTTSEEEEE----
T ss_pred hHHHHhhceEEecCCCC
Confidence 2221 22346666553
No 178
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.14 E-value=0.00088 Score=73.07 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=33.6
Q ss_pred cccccchHHHHHHHHHHhc-------CC--CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 141 NLAGKRTGKIVKEIWEDLM-------GD--KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~-------~~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.++|.+ ..++.+.+.+. .. ...++.++|++|+|||.||+.+...+
T Consensus 567 ~v~GQ~--~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 567 RVIGQD--HALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred eEcChH--HHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 478887 56666665552 11 24578999999999999999998874
No 179
>PRK04296 thymidine kinase; Provisional
Probab=97.14 E-value=0.00036 Score=62.05 Aligned_cols=111 Identities=9% Similarity=0.021 Sum_probs=60.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCC--CCCHHHHHHHHHHHHh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPE--NEDKVSRAGRLLRMLK 241 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~l~ 241 (483)
.++.|+|+.|.||||++..++.++.. +-..++.+. + .++.......++.+++..... .....+....+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~---~g~~v~i~k-~-~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEE---RGMKVLVFK-P-AIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH---cCCeEEEEe-c-cccccccCCcEecCCCCcccceEeCChHHHHHHHHh--h
Confidence 57889999999999999999888422 222334342 1 111122233445555543322 1233344444444 3
Q ss_pred cCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEEecCChh
Q 011568 242 AKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVITTRSCR 283 (483)
Q Consensus 242 ~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilvTtR~~~ 283 (483)
.++.-+||+|.+.-. ++...+...+ ...|..|++|.+...
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 324569999999632 2122222221 245778999988743
No 180
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.12 E-value=0.0021 Score=61.75 Aligned_cols=90 Identities=16% Similarity=0.170 Sum_probs=57.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCC----CCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCC---------CCCH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKP----NKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPE---------NEDK 229 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~---------~~~~ 229 (483)
.+++-|+|++|+|||+|+.+++-. .... ..=..++||+....++..++.+ +++.++..... ..+.
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~-~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVT-AQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHH-HhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 578999999999999999987754 1111 1123689999998888877654 55666543211 1123
Q ss_pred HHHH---HHHHHHHhcCCeEEEEEeCCC
Q 011568 230 VSRA---GRLLRMLKAKEKFVLILDDMW 254 (483)
Q Consensus 230 ~~~~---~~l~~~l~~~~~~LlVlDdv~ 254 (483)
+... ..+...+...+.-|||+|.+.
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 3333 333344444456689999985
No 181
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.12 E-value=0.00094 Score=58.68 Aligned_cols=37 Identities=32% Similarity=0.507 Sum_probs=28.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVT 201 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 201 (483)
...+|.|.|++|+||||+|+.+++.+ ...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEe
Confidence 45699999999999999999999884 23444555553
No 182
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.0032 Score=61.16 Aligned_cols=137 Identities=15% Similarity=0.240 Sum_probs=75.9
Q ss_pred ccccchHHHHHHHHHHhcC-CCce-EEEEEcCCCCcHHHHHHHHHhhhccCCC------------------CCCeEEEEE
Q 011568 142 LAGKRTGKIVKEIWEDLMG-DKVS-KIGVWGMGGIGKTTIMSNINNKLHEKPN------------------KFNDVIWVT 201 (483)
Q Consensus 142 ~vGr~~~~~~~~l~~~L~~-~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~ 201 (483)
++|.+ .....+..+... ++.+ .+.++|++|+||||+|..+.+.+..... ..+.+..++
T Consensus 3 ~~~~~--~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 3 LVPWQ--EAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred cccch--hHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 45555 566777777763 3344 5999999999999999999998532111 124455555
Q ss_pred eCCCCC---HHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--ccccccCCCCCCCCcEEE
Q 011568 202 VSQPLD---LIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP--LEEVGIPEPNEENGCKLV 276 (483)
Q Consensus 202 ~~~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~~s~il 276 (483)
.+.... ..+..+++.+....... . ++.-++++|+++.... -..+...+-.....+.+|
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~-~~~kviiidead~mt~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESPL----------------E-GGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCCC----------------C-CCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEE
Confidence 555433 33444444443332211 1 2678999999985422 222222222223456666
Q ss_pred EecC-ChhHhhhcC--CceEeccC
Q 011568 277 ITTR-SCRVCRSMK--CKQVEIEL 297 (483)
Q Consensus 277 vTtR-~~~v~~~~~--~~~~~l~~ 297 (483)
++|. ...+..... +..+++.+
T Consensus 144 l~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 144 LITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEcCChhhccchhhhcceeeecCC
Confidence 6665 333333222 23466666
No 183
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.09 E-value=0.0017 Score=71.06 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=32.5
Q ss_pred cccccchHHHHHHHHHHhc-------CC--CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 141 NLAGKRTGKIVKEIWEDLM-------GD--KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~-------~~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.++|.+ ..++.+...+. +. ...++.++|++|+|||+||+.+++.+
T Consensus 569 ~viGQ~--~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 569 RVIGQN--EAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred eEeCCH--HHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 477877 55555555543 11 12478899999999999999999873
No 184
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.07 E-value=0.0053 Score=57.29 Aligned_cols=90 Identities=18% Similarity=0.214 Sum_probs=55.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCC----CCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCC---------CCCCH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKP----NKFNDVIWVTVSQPLDLIKLQTEIATALKQSLP---------ENEDK 229 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~~~~ 229 (483)
..+.=|+|++|+|||.|+.+++-. .... +.=..++|++....++..++. +|++..+.... ...+.
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~-~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVN-VQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH-TTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CcEEEEEEecccccchHHHHHHHH-hhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 468899999999999999988755 2121 112359999999989887775 45554432110 01122
Q ss_pred H---HHHHHHHHHHhcCCeEEEEEeCCC
Q 011568 230 V---SRAGRLLRMLKAKEKFVLILDDMW 254 (483)
Q Consensus 230 ~---~~~~~l~~~l~~~~~~LlVlDdv~ 254 (483)
. .....+...+.+.+--|||+|.+-
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHhhccccceEEEEecchH
Confidence 3 333334444444467799999985
No 185
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0046 Score=65.32 Aligned_cols=154 Identities=12% Similarity=0.213 Sum_probs=91.8
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCe------EEEEEeCCCCCHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFND------VIWVTVSQPLDLIKLQT 213 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~------~~wv~~~~~~~~~~~~~ 213 (483)
++++||+ +++.++++.|....-.--.++|.+|+|||+++.-++.++ +.+.-+. ++-+.+
T Consensus 170 DPvIGRd--~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rI--v~g~VP~~L~~~~i~sLD~----------- 234 (786)
T COG0542 170 DPVIGRD--EEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRI--VNGDVPESLKDKRIYSLDL----------- 234 (786)
T ss_pred CCCcChH--HHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHH--hcCCCCHHHcCCEEEEecH-----------
Confidence 3599999 899999999976544444578999999999999998884 2232221 111111
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--------ccccccCCCCCCCC-cE-EEEecCChh
Q 011568 214 EIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP--------LEEVGIPEPNEENG-CK-LVITTRSCR 283 (483)
Q Consensus 214 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--------~~~l~~~l~~~~~~-s~-ilvTtR~~~ 283 (483)
..+.....-..+.++....+.+.+...++.+|++|.++..-. .+.-...-|....| -+ |=.||-++.
T Consensus 235 ---g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EY 311 (786)
T COG0542 235 ---GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEY 311 (786)
T ss_pred ---HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHH
Confidence 111111112345677777777777765699999999874311 21111111112223 23 445554322
Q ss_pred H-------hhhcCCceEeccCCChHHHHHHHHHhh
Q 011568 284 V-------CRSMKCKQVEIELLSKKEALNLFIDKV 311 (483)
Q Consensus 284 v-------~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 311 (483)
- |..-...++.+..-+.+++..+++...
T Consensus 312 Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 312 RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 1 222223568999999999999987543
No 186
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.0061 Score=58.87 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...+.++|+.|+|||++|..++..+
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999998885
No 187
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.05 E-value=0.0055 Score=56.62 Aligned_cols=88 Identities=11% Similarity=0.120 Sum_probs=55.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccC------------------
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSL------------------ 223 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~------------------ 223 (483)
..+++.|.|++|+|||+||.++..... ..-..++|++... +..++.+.+. +++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~~ 93 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTGG 93 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEeccccc
Confidence 358999999999999999999876511 2234688888765 4445555432 222110
Q ss_pred ------------CCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 011568 224 ------------PENEDKVSRAGRLLRMLKAKEKFVLILDDMWE 255 (483)
Q Consensus 224 ------------~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~ 255 (483)
....+..+....+.+.+...+.-++|+|.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 94 IGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 01134556666666666554555799999864
No 188
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.02 E-value=0.018 Score=55.95 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=42.1
Q ss_pred HHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe----CCCCCHHHHHHHHHHHhc
Q 011568 151 VKEIWEDLMG---DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTV----SQPLDLIKLQTEIATALK 220 (483)
Q Consensus 151 ~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~----~~~~~~~~~~~~il~~l~ 220 (483)
.+.+.+.+.+ +..-+|+|.|.=|+|||++.+.+.+.+......-..+++.+. ....-...++.+|..++.
T Consensus 5 a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~ 81 (325)
T PF07693_consen 5 AKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLE 81 (325)
T ss_pred HHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHH
Confidence 4455555554 457899999999999999999999885332111122334433 222234555555555543
No 189
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.02 E-value=0.0026 Score=61.15 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.....++|||++|+|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999998
No 190
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.00 E-value=0.001 Score=64.07 Aligned_cols=47 Identities=15% Similarity=0.294 Sum_probs=38.8
Q ss_pred cccccchHHHHHHHHHHhcC------CCceEEEEEcCCCCcHHHHHHHHHhhhcc
Q 011568 141 NLAGKRTGKIVKEIWEDLMG------DKVSKIGVWGMGGIGKTTIMSNINNKLHE 189 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 189 (483)
.++|.+ +.++++++++.. ...+++.++|++|+||||||..+.+.+..
T Consensus 52 ~~~G~~--~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGME--EAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcH--HHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 489988 778888888743 24588999999999999999999998533
No 191
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.99 E-value=0.0035 Score=60.72 Aligned_cols=90 Identities=13% Similarity=0.101 Sum_probs=57.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCC----CCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCC---------CCCCH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKP----NKFNDVIWVTVSQPLDLIKLQTEIATALKQSLP---------ENEDK 229 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~~~~ 229 (483)
.+++-|+|++|+|||+|+.+++-. .... ..-..++||+....++..++.+ +++.++.... ...+.
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~-~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVT-TQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHH-HhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 578889999999999999998744 1111 1124689999999888887655 4555554321 11233
Q ss_pred HHHH---HHHHHHHhcCCeEEEEEeCCC
Q 011568 230 VSRA---GRLLRMLKAKEKFVLILDDMW 254 (483)
Q Consensus 230 ~~~~---~~l~~~l~~~~~~LlVlDdv~ 254 (483)
+... ..+...+...+.-|||+|.+-
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 3332 333334444356789999985
No 192
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.99 E-value=0.0029 Score=58.88 Aligned_cols=82 Identities=27% Similarity=0.380 Sum_probs=51.4
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHH
Q 011568 152 KEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVS 231 (483)
Q Consensus 152 ~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~ 231 (483)
..+.+++. ...-+.++|++|+|||.||..+.+.+. +..+ .+.++++ .++..+|...... ..
T Consensus 96 ~~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~-sv~f~~~------~el~~~Lk~~~~~--------~~ 156 (254)
T COG1484 96 ASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL--KAGI-SVLFITA------PDLLSKLKAAFDE--------GR 156 (254)
T ss_pred HHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH--HcCC-eEEEEEH------HHHHHHHHHHHhc--------Cc
Confidence 33444555 567899999999999999999999953 2223 3566653 4455555554432 11
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCC
Q 011568 232 RAGRLLRMLKAKEKFVLILDDMW 254 (483)
Q Consensus 232 ~~~~l~~~l~~~~~~LlVlDdv~ 254 (483)
...++.+.+. +-=||||||+-
T Consensus 157 ~~~~l~~~l~--~~dlLIiDDlG 177 (254)
T COG1484 157 LEEKLLRELK--KVDLLIIDDIG 177 (254)
T ss_pred hHHHHHHHhh--cCCEEEEeccc
Confidence 2223344343 45699999985
No 193
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0033 Score=58.67 Aligned_cols=83 Identities=12% Similarity=0.219 Sum_probs=48.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh-ccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL-HEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK 241 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~-~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (483)
.++|.++||+|.|||+|++.+++.+ .+..+.|....-+.++.- .++..-... .+.......+++.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 4889999999999999999999986 233445555555544321 111111111 11223344455555555
Q ss_pred cC-CeEEEEEeCCCC
Q 011568 242 AK-EKFVLILDDMWE 255 (483)
Q Consensus 242 ~~-~~~LlVlDdv~~ 255 (483)
+. .-+++.+|.|.+
T Consensus 247 d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVES 261 (423)
T ss_pred CCCcEEEEEeHHHHH
Confidence 52 344566788863
No 194
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.97 E-value=0.0029 Score=58.31 Aligned_cols=87 Identities=16% Similarity=0.264 Sum_probs=50.6
Q ss_pred HHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCC
Q 011568 151 VKEIWEDLMG--DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENED 228 (483)
Q Consensus 151 ~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~ 228 (483)
+..+.++..+ .+...+.++|.+|+|||+||..+++.+.. .-..+++++ ..+++..+-..... ....
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~---~g~~v~~it------~~~l~~~l~~~~~~---~~~~ 152 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL---RGKSVLIIT------VADIMSAMKDTFSN---SETS 152 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEE------HHHHHHHHHHHHhh---cccc
Confidence 3444444432 22357899999999999999999998532 223456664 34455444433321 1111
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 011568 229 KVSRAGRLLRMLKAKEKFVLILDDMWE 255 (483)
Q Consensus 229 ~~~~~~~l~~~l~~~~~~LlVlDdv~~ 255 (483)
. ..+.+.+. +.-||||||+..
T Consensus 153 ~----~~~l~~l~--~~dlLvIDDig~ 173 (244)
T PRK07952 153 E----EQLLNDLS--NVDLLVIDEIGV 173 (244)
T ss_pred H----HHHHHHhc--cCCEEEEeCCCC
Confidence 1 22334444 355889999964
No 195
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.97 E-value=0.0049 Score=58.48 Aligned_cols=87 Identities=18% Similarity=0.274 Sum_probs=49.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQP-LDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK 241 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (483)
..+++|+|++|+||||++..++..+....+. ..+..++.... ....+.+....+.++.+.....+..... ...+.+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~-~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~-~~l~~~~ 271 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGN-KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELR-KALDRLR 271 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCC-CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHH-HHHHHcc
Confidence 4699999999999999999998874221111 24666665432 1233344444455554443333444433 3333333
Q ss_pred cCCeEEEEEeCC
Q 011568 242 AKEKFVLILDDM 253 (483)
Q Consensus 242 ~~~~~LlVlDdv 253 (483)
..=+|++|..
T Consensus 272 --~~d~vliDt~ 281 (282)
T TIGR03499 272 --DKDLILIDTA 281 (282)
T ss_pred --CCCEEEEeCC
Confidence 3457777753
No 196
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0072 Score=55.75 Aligned_cols=149 Identities=15% Similarity=0.189 Sum_probs=81.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
-+-|.++|++|.||+.||+.|+.. .. .-|.+++... ++..- ....+.+...|.+.-+.
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATE---An-----STFFSvSSSD--------LvSKW------mGESEkLVknLFemARe 223 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATE---AN-----STFFSVSSSD--------LVSKW------MGESEKLVKNLFEMARE 223 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhh---cC-----CceEEeehHH--------HHHHH------hccHHHHHHHHHHHHHh
Confidence 467899999999999999999887 21 2334444321 11111 12335666777777777
Q ss_pred CCeEEEEEeCCCCc---------cCccccccCC-------CCCCCCcEEEEecCChhHhhhcC---C-ceEeccCCChHH
Q 011568 243 KEKFVLILDDMWEA---------FPLEEVGIPE-------PNEENGCKLVITTRSCRVCRSMK---C-KQVEIELLSKKE 302 (483)
Q Consensus 243 ~~~~LlVlDdv~~~---------~~~~~l~~~l-------~~~~~~s~ilvTtR~~~v~~~~~---~-~~~~l~~L~~~e 302 (483)
.++.+|++|.++.. +.-..+...| .+...|.-||-.|..+-+....- . ..|-+ ||++..
T Consensus 224 ~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~ 302 (439)
T KOG0739|consen 224 NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAH 302 (439)
T ss_pred cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec-cCCcHH
Confidence 79999999999732 1111111111 12233444444555433322211 1 12222 455555
Q ss_pred HH-HHHHHhhCCCCCCCCCcchHHHHHHHHHcCCch
Q 011568 303 AL-NLFIDKVGSSILQVPTLNEGIINEVVEECGRLP 337 (483)
Q Consensus 303 a~-~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 337 (483)
|. .+|.-+++...+.. .+...+++.++..|..
T Consensus 303 AR~~MF~lhlG~tp~~L---T~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 303 ARARMFKLHLGDTPHVL---TEQDFKELARKTEGYS 335 (439)
T ss_pred HhhhhheeccCCCcccc---chhhHHHHHhhcCCCC
Confidence 54 45555554443332 4566788888887753
No 197
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0059 Score=62.35 Aligned_cols=150 Identities=14% Similarity=0.173 Sum_probs=78.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRML 240 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 240 (483)
...+-|.++||+|+|||++|+.+++. -...| +++..+ +++.... .+.+..+..+++.-
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne---~~~nF-----lsvkgp--------EL~sk~v------GeSEr~ir~iF~kA 523 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANE---AGMNF-----LSVKGP--------ELFSKYV------GESERAIREVFRKA 523 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhh---hcCCe-----eeccCH--------HHHHHhc------CchHHHHHHHHHHH
Confidence 34677999999999999999999998 33333 232221 1111111 12233344444444
Q ss_pred hcCCeEEEEEeCCCCccC-------------ccccccCCCCCCCCcEE-EE--ecCChhHhhh-cC---Cc-eEeccCCC
Q 011568 241 KAKEKFVLILDDMWEAFP-------------LEEVGIPEPNEENGCKL-VI--TTRSCRVCRS-MK---CK-QVEIELLS 299 (483)
Q Consensus 241 ~~~~~~LlVlDdv~~~~~-------------~~~l~~~l~~~~~~s~i-lv--TtR~~~v~~~-~~---~~-~~~l~~L~ 299 (483)
+.--+++|.||.++.... +..+...+........| || |.|...+... +. .. .+.++.=+
T Consensus 524 R~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD 603 (693)
T KOG0730|consen 524 RQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPD 603 (693)
T ss_pred hhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCcc
Confidence 333789999999874211 11111122221222233 33 3344433221 22 12 35666666
Q ss_pred hHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCc
Q 011568 300 KKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRL 336 (483)
Q Consensus 300 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 336 (483)
.+.-.++|+.++..-..++. -...+|++++.|.
T Consensus 604 ~~aR~~Ilk~~~kkmp~~~~----vdl~~La~~T~g~ 636 (693)
T KOG0730|consen 604 LEARLEILKQCAKKMPFSED----VDLEELAQATEGY 636 (693)
T ss_pred HHHHHHHHHHHHhcCCCCcc----ccHHHHHHHhccC
Confidence 77778999988766543331 1245566665554
No 198
>PRK06921 hypothetical protein; Provisional
Probab=96.95 E-value=0.0042 Score=58.28 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=29.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTV 202 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 202 (483)
....+.++|++|+|||+||..+++.+.. ..-..+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~--~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR--KKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh--hcCceEEEEEH
Confidence 3577999999999999999999998421 21234667664
No 199
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.94 E-value=0.0018 Score=69.34 Aligned_cols=45 Identities=22% Similarity=0.325 Sum_probs=33.0
Q ss_pred cccccchHHHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 141 NLAGKRTGKIVKEIWEDLMG---------DKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.++|.+ +.++.+...+.. .....+.++|++|+|||.||+.++..+
T Consensus 459 ~ViGQ~--~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 459 LVFGQD--KAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred eEeCcH--HHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 367776 556666655531 124578999999999999999998883
No 200
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0099 Score=60.16 Aligned_cols=148 Identities=18% Similarity=0.204 Sum_probs=78.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
.+=|.+|||+|+|||.||+.+++.+ . +=++.++.+ +|+.... ++ .++.++.++..-.+
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel---~-----vPf~~isAp--------eivSGvS-----GE-SEkkiRelF~~A~~ 280 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGEL---G-----VPFLSISAP--------EIVSGVS-----GE-SEKKIRELFDQAKS 280 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhc---C-----CceEeecch--------hhhcccC-----cc-cHHHHHHHHHHHhc
Confidence 4668999999999999999999982 1 223333332 1122111 12 24445555555444
Q ss_pred CCeEEEEEeCCCCcc---Cc----------ccccc---CCCCC-CCC-cEEEE--ecCChhHhh---hcCC--ceEeccC
Q 011568 243 KEKFVLILDDMWEAF---PL----------EEVGI---PEPNE-ENG-CKLVI--TTRSCRVCR---SMKC--KQVEIEL 297 (483)
Q Consensus 243 ~~~~LlVlDdv~~~~---~~----------~~l~~---~l~~~-~~~-s~ilv--TtR~~~v~~---~~~~--~~~~l~~ 297 (483)
.-++++++|+++-.. ++ .++.. -+... ..| ..++| |+|...+.. ..+- +.|.|.-
T Consensus 281 ~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~v 360 (802)
T KOG0733|consen 281 NAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGV 360 (802)
T ss_pred cCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecC
Confidence 589999999997321 00 11111 11111 112 22333 456544322 2222 3477776
Q ss_pred CChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCc
Q 011568 298 LSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRL 336 (483)
Q Consensus 298 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 336 (483)
-+...-.+++.....+-..+. .-..++|++.+-|.
T Consensus 361 P~e~aR~~IL~~~~~~lrl~g----~~d~~qlA~lTPGf 395 (802)
T KOG0733|consen 361 PSETAREEILRIICRGLRLSG----DFDFKQLAKLTPGF 395 (802)
T ss_pred CchHHHHHHHHHHHhhCCCCC----CcCHHHHHhcCCCc
Confidence 677666667666554432221 11255677777664
No 201
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.93 E-value=0.0005 Score=57.73 Aligned_cols=42 Identities=19% Similarity=0.310 Sum_probs=27.2
Q ss_pred cccchHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 143 AGKRTGKIVKEIWEDLMG--DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 143 vGr~~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
||.. ..++++.+.+.. .....|.|+|..|+||+++|+.++..
T Consensus 1 vG~S--~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKS--PAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SC--HHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCC--HHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 3444 344444444422 33466789999999999999988876
No 202
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.92 E-value=0.0039 Score=60.90 Aligned_cols=88 Identities=16% Similarity=0.139 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK 241 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (483)
..++.++|+.|+||||++..+...+. .......+..++... .....+-++...+.++.+.....+..+.... ...+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~-l~~l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLA-LAELR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHH-HHHhc
Confidence 47999999999999999999988732 111223466666433 3345566666667776644333333333322 23344
Q ss_pred cCCeEEEEEeCCC
Q 011568 242 AKEKFVLILDDMW 254 (483)
Q Consensus 242 ~~~~~LlVlDdv~ 254 (483)
+ +-++++|..-
T Consensus 215 ~--~DlVLIDTaG 225 (374)
T PRK14722 215 N--KHMVLIDTIG 225 (374)
T ss_pred C--CCEEEEcCCC
Confidence 3 4567799874
No 203
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.90 E-value=0.00098 Score=64.30 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTV 202 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 202 (483)
.-+.++|++|+|||+||..+++.+.. .. ..++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~--~g-~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLD--RG-KSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHH--CC-CeEEEEEH
Confidence 77999999999999999999998522 22 34667664
No 204
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.90 E-value=0.0073 Score=52.18 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCC----CCccCccccccCCCCCCCCcEEEEecCChhHhhhcCCceEec
Q 011568 229 KVSRAGRLLRMLKAKEKFVLILDDM----WEAFPLEEVGIPEPNEENGCKLVITTRSCRVCRSMKCKQVEI 295 (483)
Q Consensus 229 ~~~~~~~l~~~l~~~~~~LlVlDdv----~~~~~~~~l~~~l~~~~~~s~ilvTtR~~~v~~~~~~~~~~l 295 (483)
-++..-.+.+.+-+ ++-+|+=|.- +....|+-+...-.-+..|..||++|.+..+...+....+.+
T Consensus 141 GEQQRvaIARAiV~-~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l 210 (223)
T COG2884 141 GEQQRVAIARAIVN-QPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLAL 210 (223)
T ss_pred hHHHHHHHHHHHcc-CCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEE
Confidence 34555567777777 8999999954 333333322111122356889999999998888776655433
No 205
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0038 Score=62.00 Aligned_cols=92 Identities=17% Similarity=0.262 Sum_probs=57.9
Q ss_pred ccccchH-HHHHHHHHHhcCCC---------ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHH
Q 011568 142 LAGKRTG-KIVKEIWEDLMGDK---------VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKL 211 (483)
Q Consensus 142 ~vGr~~~-~~~~~l~~~L~~~~---------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 211 (483)
+-|-+.. .++++|+++|.+.. .+=|.++|++|.|||-||+.++-. ..+ . +|...+..|+ +
T Consensus 306 VkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE-A~V--P----FF~~sGSEFd--E- 375 (752)
T KOG0734|consen 306 VKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE-AGV--P----FFYASGSEFD--E- 375 (752)
T ss_pred ccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc-cCC--C----eEeccccchh--h-
Confidence 4455433 68899999997742 456899999999999999999887 332 1 2222222221 1
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 011568 212 QTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWE 255 (483)
Q Consensus 212 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~ 255 (483)
++-.. .....+.|+..-+..-+|+|++|.++.
T Consensus 376 ---m~VGv---------GArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 376 ---MFVGV---------GARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred ---hhhcc---------cHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 11111 123444455555555899999999874
No 206
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.89 E-value=0.0039 Score=60.41 Aligned_cols=90 Identities=13% Similarity=0.149 Sum_probs=56.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCC---C-CCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCC---------CCCH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKP---N-KFNDVIWVTVSQPLDLIKLQTEIATALKQSLPE---------NEDK 229 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~---------~~~~ 229 (483)
..++-|+|++|+|||+|+..++-. .... . .-..++|++....++..++. ++++.++..... ..+.
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~-~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVT-CQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHH-hhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCChhhhccceEEEecCCH
Confidence 578899999999999999988754 1111 1 11268999999988887764 556665543211 1223
Q ss_pred HHHHHH---HHHHHhcCCeEEEEEeCCC
Q 011568 230 VSRAGR---LLRMLKAKEKFVLILDDMW 254 (483)
Q Consensus 230 ~~~~~~---l~~~l~~~~~~LlVlDdv~ 254 (483)
+..... +...+...+.-|||+|.+-
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 333222 2233344467799999875
No 207
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.88 E-value=0.0067 Score=58.58 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=40.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCC----CCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPN----KFNDVIWVTVSQPLDLIKLQTEIATALK 220 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~ 220 (483)
..++-|+|++|+|||+++.+++... .... .=..++||+....++..++. +++..++
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 5789999999999999999998762 1110 11269999998888877654 3444443
No 208
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.88 E-value=0.0065 Score=58.82 Aligned_cols=90 Identities=18% Similarity=0.263 Sum_probs=55.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCC----CCeEEEEEeCCCCCHHHHHHHHHHHhcccCCC---------CCCH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNK----FNDVIWVTVSQPLDLIKLQTEIATALKQSLPE---------NEDK 229 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~---------~~~~ 229 (483)
..++-|+|++|+|||+++.+++... ..... =..++||+....++..++.+ +++.++..... ..+.
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l~~i~~~~~~~~ 179 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVLDNIHVARAYNS 179 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhhccEEEEeCCCH
Confidence 5789999999999999999998762 11111 13689999988888766654 34444432110 0111
Q ss_pred ---HHHHHHHHHHHhc-CCeEEEEEeCCC
Q 011568 230 ---VSRAGRLLRMLKA-KEKFVLILDDMW 254 (483)
Q Consensus 230 ---~~~~~~l~~~l~~-~~~~LlVlDdv~ 254 (483)
......+...+.. .+.-|||+|.+-
T Consensus 180 ~~~~~~~~~l~~~i~~~~~~~lvVIDSis 208 (317)
T PRK04301 180 DHQMLLAEKAEELIKEGENIKLVIVDSLT 208 (317)
T ss_pred HHHHHHHHHHHHHHhccCceeEEEEECch
Confidence 1223344444443 345689999875
No 209
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.87 E-value=0.0031 Score=64.99 Aligned_cols=72 Identities=19% Similarity=0.311 Sum_probs=51.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH-h
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRML-K 241 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~ 241 (483)
-++..++|++|.||||||.-++++ ..| .++=|++|..-+...+-..|...+... ..+ .
T Consensus 326 kKilLL~GppGlGKTTLAHViAkq-----aGY-sVvEINASDeRt~~~v~~kI~~avq~~---------------s~l~a 384 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQ-----AGY-SVVEINASDERTAPMVKEKIENAVQNH---------------SVLDA 384 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHh-----cCc-eEEEecccccccHHHHHHHHHHHHhhc---------------ccccc
Confidence 579999999999999999999988 233 367788888766666665555544321 112 1
Q ss_pred cCCeEEEEEeCCCC
Q 011568 242 AKEKFVLILDDMWE 255 (483)
Q Consensus 242 ~~~~~LlVlDdv~~ 255 (483)
+.++.-||+|.++-
T Consensus 385 dsrP~CLViDEIDG 398 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDG 398 (877)
T ss_pred CCCcceEEEecccC
Confidence 13788899999974
No 210
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.84 E-value=0.0041 Score=59.89 Aligned_cols=91 Identities=14% Similarity=0.143 Sum_probs=55.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCC---C-CCCeEEEEEeCCCCCHHHHHHHHHHHhcccCC---------CCCC
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKP---N-KFNDVIWVTVSQPLDLIKLQTEIATALKQSLP---------ENED 228 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~~~ 228 (483)
...++.|+|++|+|||+|+..++... ... . .-..++|++....++..++ .++.+.++.... ...+
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~-~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~ 172 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTC-QLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYN 172 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHH-hhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCC
Confidence 35899999999999999999987641 111 1 1235799998887777663 444555443211 0112
Q ss_pred HHHH---HHHHHHHHhcCCeEEEEEeCCC
Q 011568 229 KVSR---AGRLLRMLKAKEKFVLILDDMW 254 (483)
Q Consensus 229 ~~~~---~~~l~~~l~~~~~~LlVlDdv~ 254 (483)
.++. ...+...+...+.-|||+|.+-
T Consensus 173 ~~~~~~~l~~~~~~~~~~~~~LvVIDSI~ 201 (316)
T TIGR02239 173 TDHQLQLLQQAAAMMSESRFALLIVDSAT 201 (316)
T ss_pred hHHHHHHHHHHHHhhccCCccEEEEECcH
Confidence 2232 2233333434466789999875
No 211
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.82 E-value=0.0088 Score=59.96 Aligned_cols=87 Identities=23% Similarity=0.246 Sum_probs=51.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcccCCC---CCCHHHHHHHHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQSLPE---NEDKVSRAGRLL 237 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~---~~~~~~~~~~l~ 237 (483)
...+|.++|++|+||||++..++..+.+ ..+ .+..+++.. .....+.+..+..+++.+... ..+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~--~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK--KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH--cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 3578999999999999999999988532 222 344455433 223455566666766653321 123333333333
Q ss_pred HHHhcCCeEEEEEeCC
Q 011568 238 RMLKAKEKFVLILDDM 253 (483)
Q Consensus 238 ~~l~~~~~~LlVlDdv 253 (483)
+.+.. . -++|+|..
T Consensus 171 ~~~~~-~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKK-A-DVIIVDTA 184 (437)
T ss_pred HHhhc-C-CEEEEECC
Confidence 44443 2 56777776
No 212
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.82 E-value=0.0091 Score=55.86 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=57.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcc----cCCCCCCHHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQ----SLPENEDKVSRAGRLLR 238 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~----~~~~~~~~~~~~~~l~~ 238 (483)
.+++=|+|+.|+||||+|.+++-. .+..-..++|++..+.+++..+..-....+.. ..............+.+
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~---aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVAN---AQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHH---hhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 578899999999999999998877 33334478999999988877665433331221 22222223333444444
Q ss_pred HHhcCCeEEEEEeCCC
Q 011568 239 MLKAKEKFVLILDDMW 254 (483)
Q Consensus 239 ~l~~~~~~LlVlDdv~ 254 (483)
.... +--|+|+|.+-
T Consensus 137 ~~~~-~i~LvVVDSva 151 (279)
T COG0468 137 SGAE-KIDLLVVDSVA 151 (279)
T ss_pred hccC-CCCEEEEecCc
Confidence 4443 47799999985
No 213
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.81 E-value=0.0069 Score=53.36 Aligned_cols=122 Identities=19% Similarity=0.179 Sum_probs=65.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeC--CCCCHHHH------HHHHHHHhcccC------CCCC
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVS--QPLDLIKL------QTEIATALKQSL------PENE 227 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~--~~~~~~~~------~~~il~~l~~~~------~~~~ 227 (483)
...+++|.|+.|+|||||++.++... ......+++.-. ...+.... ..++++.++... ..-.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 34699999999999999999998762 122333443311 11122111 122445444321 1112
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEEeCCCCccC---ccccccCCCC--CCCCcEEEEecCChhHhhhc
Q 011568 228 DKVSRAGRLLRMLKAKEKFVLILDDMWEAFP---LEEVGIPEPN--EENGCKLVITTRSCRVCRSM 288 (483)
Q Consensus 228 ~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~---~~~l~~~l~~--~~~~s~ilvTtR~~~v~~~~ 288 (483)
.-+...-.+.+.+.. .+-++++|+.-..-+ ...+...+.. ...+..||++|.+.......
T Consensus 100 ~G~~qrl~laral~~-~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~ 164 (180)
T cd03214 100 GGERQRVLLARALAQ-EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY 164 (180)
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 233444456667777 889999998753222 2222222211 11256788888776654333
No 214
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.81 E-value=0.02 Score=55.65 Aligned_cols=44 Identities=25% Similarity=0.296 Sum_probs=32.0
Q ss_pred cccccchHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 141 NLAGKRTGKIVKEIWEDLMG--DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.++|.. ..+.++.+.+.. .....|.|+|..|+||+++|+.+...
T Consensus 7 ~liG~S--~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 7 NLLGEA--NSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred ccEECC--HHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 478887 455555554432 23357889999999999999998765
No 215
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.80 E-value=0.023 Score=61.17 Aligned_cols=44 Identities=20% Similarity=0.350 Sum_probs=32.6
Q ss_pred cccccchHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 141 NLAGKRTGKIVKEIWEDLM--GDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.++|+. ..+..+.+.+. ......|.|+|+.|+|||++|+.+.+.
T Consensus 377 ~liG~S--~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 377 EIIGRS--EAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred ceeecC--HHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 488887 55555544442 123467899999999999999999876
No 216
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.0064 Score=59.05 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=56.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRML 240 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 240 (483)
+.+++.|+|+.|+||||++..++..+.. + . ..+.+++... .....+-++...+.++.+.....+..+....+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~-~-g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLK-Q-N-RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-c-C-CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 3579999999999999999999877422 1 1 3467777654 223455566666666654333345555544443322
Q ss_pred hcCCeEEEEEeCCC
Q 011568 241 KAKEKFVLILDDMW 254 (483)
Q Consensus 241 ~~~~~~LlVlDdv~ 254 (483)
..+..=+|++|-.-
T Consensus 282 ~~~~~D~VLIDTAG 295 (407)
T PRK12726 282 YVNCVDHILIDTVG 295 (407)
T ss_pred hcCCCCEEEEECCC
Confidence 11245688889874
No 217
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.79 E-value=0.0062 Score=53.25 Aligned_cols=86 Identities=24% Similarity=0.249 Sum_probs=45.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhccc---CCCCCCHHHHHHHHH-HH
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQS---LPENEDKVSRAGRLL-RM 239 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~---~~~~~~~~~~~~~l~-~~ 239 (483)
++.++|++|+||||++..++..+... . ..++.++... .....+.+.......+.+ .....+......... ..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~--g-~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK--G-KKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHA 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--C-CcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998874322 1 2344555433 223334444444444431 111233343333333 33
Q ss_pred HhcCCeEEEEEeCCC
Q 011568 240 LKAKEKFVLILDDMW 254 (483)
Q Consensus 240 l~~~~~~LlVlDdv~ 254 (483)
... ..-++|+|..-
T Consensus 79 ~~~-~~d~viiDt~g 92 (173)
T cd03115 79 REE-NFDVVIVDTAG 92 (173)
T ss_pred HhC-CCCEEEEECcc
Confidence 333 44466688754
No 218
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.77 E-value=0.021 Score=55.49 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=28.8
Q ss_pred cccchHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 143 AGKRTGKIVKEIWEDLMG--DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 143 vGr~~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+|.. ..+.++.+.+.. .....|.|+|..|+||+++|+.+.+.
T Consensus 2 iG~S--~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 2 IGES--NAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CcCC--HHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 5555 344444443321 22356899999999999999999876
No 219
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76 E-value=0.006 Score=59.45 Aligned_cols=89 Identities=17% Similarity=0.252 Sum_probs=51.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQP-LDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK 241 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (483)
.++|+|+|++|+||||++..++..+. ...+ .+..++.... ....+-+....+.++.+.....+.......+...-.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~--~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH--GKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH--HcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 47999999999999999999988742 1222 3555655432 223333444444555443323455555444433322
Q ss_pred cCCeEEEEEeCCC
Q 011568 242 AKEKFVLILDDMW 254 (483)
Q Consensus 242 ~~~~~LlVlDdv~ 254 (483)
..+.=++++|-.-
T Consensus 318 ~~~~DvVLIDTaG 330 (436)
T PRK11889 318 EARVDYILIDTAG 330 (436)
T ss_pred ccCCCEEEEeCcc
Confidence 1124578888764
No 220
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.76 E-value=0.022 Score=59.48 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=34.3
Q ss_pred cccccccchHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 139 TRNLAGKRTGKIVKEIWEDLMG--DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 139 ~~~~vGr~~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...++|.. ..+.++.+.+.. .....|.|+|+.|+|||++|+.+.+.
T Consensus 195 ~~~liG~s--~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 195 EDGIIGKS--PAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred cCceEECC--HHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 34589988 566666655532 23456789999999999999999887
No 221
>PRK04328 hypothetical protein; Provisional
Probab=96.76 E-value=0.0049 Score=57.36 Aligned_cols=87 Identities=10% Similarity=0.096 Sum_probs=53.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccC------------------
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSL------------------ 223 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~------------------ 223 (483)
..+++.|.|++|+|||+|+.++.... . ..-..++|++.... ..++.+. +++++...
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~--~-~~ge~~lyis~ee~--~~~i~~~-~~~~g~d~~~~~~~~~l~iid~~~~~ 95 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG--L-QMGEPGVYVALEEH--PVQVRRN-MRQFGWDVRKYEEEGKFAIVDAFTGG 95 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH--H-hcCCcEEEEEeeCC--HHHHHHH-HHHcCCCHHHHhhcCCEEEEeccccc
Confidence 35799999999999999999987661 1 22345788887663 3333332 23332210
Q ss_pred ------------CCCCCHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 011568 224 ------------PENEDKVSRAGRLLRMLKAKEKFVLILDDMW 254 (483)
Q Consensus 224 ------------~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~ 254 (483)
....+.......+.+.+...+.-++|+|.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt 138 (249)
T PRK04328 96 IGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVS 138 (249)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChh
Confidence 0112344555666666655456689999985
No 222
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.76 E-value=0.0048 Score=56.55 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=68.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCC----------C---CeEEEEEe----CC--CCCHH--------------
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNK----------F---NDVIWVTV----SQ--PLDLI-------------- 209 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~----------f---~~~~wv~~----~~--~~~~~-------------- 209 (483)
..+++|+||.|.|||||.+.+..-+...++. + ..+.||.= .. +.++.
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 3799999999999999999998742211110 1 23455531 11 11122
Q ss_pred --------HHHHHHHHHhccc------CCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc------cCccccccCCCCC
Q 011568 210 --------KLQTEIATALKQS------LPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEA------FPLEEVGIPEPNE 269 (483)
Q Consensus 210 --------~~~~~il~~l~~~------~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~------~~~~~l~~~l~~~ 269 (483)
+...+.++.++.. ...-..-+...-.+.+.|.. ++=||+||.--.- ..+-.+...+..
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~-~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~- 187 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQ-NPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ- 187 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhcc-CCCEEEecCCcccCCHHHHHHHHHHHHHHHH-
Confidence 3344445554431 11112233444556777887 8999999975321 222222223332
Q ss_pred CCCcEEEEecCChhHhhh
Q 011568 270 ENGCKLVITTRSCRVCRS 287 (483)
Q Consensus 270 ~~~s~ilvTtR~~~v~~~ 287 (483)
. |.-||++|.+-.....
T Consensus 188 e-g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 188 E-GKTVLMVTHDLGLVMA 204 (254)
T ss_pred C-CCEEEEEeCCcHHhHh
Confidence 3 8889999988655444
No 223
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.74 E-value=0.0017 Score=58.14 Aligned_cols=109 Identities=16% Similarity=0.212 Sum_probs=58.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHH-HHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLI-KLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
.+|.|.|+.|+||||++..+...+ .......++.- ..+.... .-...++.+- .-..+.......+...+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~----~vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTI-EDPIEFVHESKRSLINQR----EVGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEE-cCCccccccCccceeeec----ccCCCccCHHHHHHHHhcC
Confidence 478999999999999999888773 22223333322 1111100 0000111110 0011223344556677776
Q ss_pred CCeEEEEEeCCCCccCccccccCCCCCCCCcEEEEecCChhH
Q 011568 243 KEKFVLILDDMWEAFPLEEVGIPEPNEENGCKLVITTRSCRV 284 (483)
Q Consensus 243 ~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~ilvTtR~~~v 284 (483)
.+=++++|++.+.+........ ...|..++.|+.....
T Consensus 74 -~pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 74 -DPDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSA 111 (198)
T ss_pred -CcCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcH
Confidence 6789999999766554432221 1235557777765443
No 224
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.74 E-value=0.0039 Score=59.65 Aligned_cols=73 Identities=23% Similarity=0.372 Sum_probs=46.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK 241 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (483)
..+-+.|+|+.|+|||.||..+++.+. ...+ .+.+++++ +++..+-..... .+. ....+.+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~-~v~~~~~~------~l~~~lk~~~~~-----~~~----~~~l~~l~ 216 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA--KKGV-SSTLLHFP------EFIRELKNSISD-----GSV----KEKIDAVK 216 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCC-CEEEEEHH------HHHHHHHHHHhc-----CcH----HHHHHHhc
Confidence 346799999999999999999999953 2233 35666643 455555544421 111 12233343
Q ss_pred cCCeEEEEEeCCC
Q 011568 242 AKEKFVLILDDMW 254 (483)
Q Consensus 242 ~~~~~LlVlDdv~ 254 (483)
+.=||||||+-
T Consensus 217 --~~dlLiIDDiG 227 (306)
T PRK08939 217 --EAPVLMLDDIG 227 (306)
T ss_pred --CCCEEEEecCC
Confidence 56799999995
No 225
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.73 E-value=0.0073 Score=55.70 Aligned_cols=87 Identities=16% Similarity=0.155 Sum_probs=55.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCC-----------------
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLP----------------- 224 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----------------- 224 (483)
..+++.|+|++|+|||+|+.++..... + .=..++|++.... ..++.+.+ .+++....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~--~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL--K-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH--h-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 357999999999999999999976521 1 2346889988653 44555543 33332111
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 011568 225 ---ENEDKVSRAGRLLRMLKAKEKFVLILDDMW 254 (483)
Q Consensus 225 ---~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~ 254 (483)
...+.......+...+...+.-++|+|.+.
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 012234555666666654466689999875
No 226
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.73 E-value=0.006 Score=57.11 Aligned_cols=40 Identities=28% Similarity=0.423 Sum_probs=30.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCC
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQP 205 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 205 (483)
.+++.|.|++|+|||+++.+++....+ .=..+++++...+
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~---~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQAS---RGNPVLFVTVESP 75 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh---CCCcEEEEEecCC
Confidence 578999999999999999998766221 2235788888643
No 227
>PTZ00035 Rad51 protein; Provisional
Probab=96.72 E-value=0.01 Score=57.66 Aligned_cols=92 Identities=13% Similarity=0.132 Sum_probs=55.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCC----CCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCC---------CCCC
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKP----NKFNDVIWVTVSQPLDLIKLQTEIATALKQSLP---------ENED 228 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~~~ 228 (483)
...++.|+|++|+|||+|+..++-. .... ..=..++|++....++..++ .++.+.++.... ...+
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~-~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVT-CQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHH-hccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCC
Confidence 3578999999999999999998765 2211 11234779998877776663 444555443211 1122
Q ss_pred HHHHHHH---HHHHHhcCCeEEEEEeCCCC
Q 011568 229 KVSRAGR---LLRMLKAKEKFVLILDDMWE 255 (483)
Q Consensus 229 ~~~~~~~---l~~~l~~~~~~LlVlDdv~~ 255 (483)
.++.... +...+...+.-|||+|.+..
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 2333332 33334344667999999853
No 228
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.69 E-value=0.0051 Score=51.99 Aligned_cols=104 Identities=14% Similarity=0.162 Sum_probs=57.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
..+++|.|+.|.|||||++.+..... .....+|+.-.. .++.- +.-...+...-.+.+.+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~ 87 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE----PDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC----CCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999977621 223334432100 00000 0012223344445667776
Q ss_pred CCeEEEEEeCCCCccC---ccccccCCCCCCCCcEEEEecCChhHhhh
Q 011568 243 KEKFVLILDDMWEAFP---LEEVGIPEPNEENGCKLVITTRSCRVCRS 287 (483)
Q Consensus 243 ~~~~LlVlDdv~~~~~---~~~l~~~l~~~~~~s~ilvTtR~~~v~~~ 287 (483)
++-++++|+.-..-+ ...+...+... +..||++|.+......
T Consensus 88 -~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 88 -NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred -CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 788999998753222 22222222111 2467888877655543
No 229
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.0077 Score=59.38 Aligned_cols=89 Identities=12% Similarity=0.118 Sum_probs=55.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCC-CCCCeEEEEEeCC-CCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKP-NKFNDVIWVTVSQ-PLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRML 240 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 240 (483)
..+|.++|+.|+||||.+..++..+.... ..-..+..+++.. .....+-++...+.++.+.....+.......+.+ +
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~-~ 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ-S 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH-h
Confidence 57999999999999999999988743221 1123456666654 2223334666677676654444444444433333 3
Q ss_pred hcCCeEEEEEeCCC
Q 011568 241 KAKEKFVLILDDMW 254 (483)
Q Consensus 241 ~~~~~~LlVlDdv~ 254 (483)
. +.-++++|.+-
T Consensus 253 -~-~~DlVLIDTaG 264 (388)
T PRK12723 253 -K-DFDLVLVDTIG 264 (388)
T ss_pred -C-CCCEEEEcCCC
Confidence 3 56789999884
No 230
>PRK06547 hypothetical protein; Provisional
Probab=96.69 E-value=0.0027 Score=55.32 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=27.3
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 154 IWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 154 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+...+......+|+|.|++|+||||+|+.+.+.
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 334455567889999999999999999999887
No 231
>PRK06696 uridine kinase; Validated
Probab=96.68 E-value=0.0026 Score=58.18 Aligned_cols=39 Identities=21% Similarity=0.447 Sum_probs=31.0
Q ss_pred HHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 149 KIVKEIWEDLM---GDKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 149 ~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+.+++|.+.+. .+...+|+|.|.+|+||||||+.+...+
T Consensus 5 ~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 5 QLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34556665553 3467899999999999999999999885
No 232
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.02 Score=59.21 Aligned_cols=150 Identities=12% Similarity=0.128 Sum_probs=79.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK 241 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (483)
..+.+.++|++|+|||.||+.+++. ....|-.+. .. +++... ....+..+..+...-.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~---~~~~fi~v~-----~~--------~l~sk~------vGesek~ir~~F~~A~ 332 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALE---SRSRFISVK-----GS--------ELLSKW------VGESEKNIRELFEKAR 332 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhh---CCCeEEEee-----CH--------HHhccc------cchHHHHHHHHHHHHH
Confidence 3568999999999999999999996 333333222 11 111100 1122333334443333
Q ss_pred cCCeEEEEEeCCCCccCc-------------cccccCCC--CCCCCcEEEEecCChhHhhh----cCC--ceEeccCCCh
Q 011568 242 AKEKFVLILDDMWEAFPL-------------EEVGIPEP--NEENGCKLVITTRSCRVCRS----MKC--KQVEIELLSK 300 (483)
Q Consensus 242 ~~~~~LlVlDdv~~~~~~-------------~~l~~~l~--~~~~~s~ilvTtR~~~v~~~----~~~--~~~~l~~L~~ 300 (483)
...++.|++|+++..... ..+...+. ....+..||-||-....... .+- ..+.+++-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 338999999999743111 11222222 11223334444433222211 111 2478888899
Q ss_pred HHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCC
Q 011568 301 KEALNLFIDKVGSSILQVPTLNEGIINEVVEECGR 335 (483)
Q Consensus 301 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G 335 (483)
++..+.|+.+......+. ...-....+++.+.|
T Consensus 413 ~~r~~i~~~~~~~~~~~~--~~~~~~~~l~~~t~~ 445 (494)
T COG0464 413 EERLEIFKIHLRDKKPPL--AEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHHHhcccCCcc--hhhhhHHHHHHHhcC
Confidence 999999999876443220 012344555555555
No 233
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.67 E-value=0.007 Score=53.22 Aligned_cols=116 Identities=15% Similarity=0.102 Sum_probs=58.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccc---------------CCCCC
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQS---------------LPENE 227 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~---------------~~~~~ 227 (483)
..+++|.|+.|+|||||++.+...... -...+++.-. ++......+-+.++.- ...-.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS 100 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP----QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFS 100 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC----CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCC
Confidence 468999999999999999999876211 1223333211 1111111111111110 00011
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEEeCCCCccC---ccccccCCCCCCCCcEEEEecCChhHhh
Q 011568 228 DKVSRAGRLLRMLKAKEKFVLILDDMWEAFP---LEEVGIPEPNEENGCKLVITTRSCRVCR 286 (483)
Q Consensus 228 ~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~---~~~l~~~l~~~~~~s~ilvTtR~~~v~~ 286 (483)
.-+...-.+.+.+.. ++-++++|+....-+ .+.+...+.....+..||++|.+.....
T Consensus 101 ~G~~qrv~laral~~-~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 101 GGERQRLALARILLQ-DAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 123333445666666 789999999864322 1112111111123567888887766554
No 234
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.67 E-value=0.18 Score=46.41 Aligned_cols=228 Identities=15% Similarity=0.182 Sum_probs=120.4
Q ss_pred ccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccC---CCCCCeEEEEEeCCC-------------
Q 011568 142 LAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEK---PNKFNDVIWVTVSQP------------- 205 (483)
Q Consensus 142 ~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~------------- 205 (483)
+.+++ +....+......++.+=..++||+|.||-|.+..+.+++-.. +-.-+..-|.+-++.
T Consensus 15 l~~~~--e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 15 LIYHE--ELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred cccHH--HHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 44444 444555555555678899999999999999888887774111 111222334332211
Q ss_pred --------CCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeE-EEEEeCCCCc--cCccccccCCCCCCCCcE
Q 011568 206 --------LDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKF-VLILDDMWEA--FPLEEVGIPEPNEENGCK 274 (483)
Q Consensus 206 --------~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~-LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ 274 (483)
..-.-+.++|++..+...+-. ..+.+.| ++|+-.+++. +....+....-.-...+|
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~qie-------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~R 159 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQIE-------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCR 159 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcchh-------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCce
Confidence 112334555555554422100 1111334 5555555432 111111111111234566
Q ss_pred EEEecCC-hhHhhhcC--CceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHhhcC-C
Q 011568 275 LVITTRS-CRVCRSMK--CKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAASMSG-E 350 (483)
Q Consensus 275 ilvTtR~-~~v~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~-~ 350 (483)
+|+...+ ..+-.... +-.+.++..+++|....++.......... ..+.+.+|+++++|+-.-.-.+...++- +
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l---p~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL---PKELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC---cHHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 6664432 11111111 22479999999999999998876665554 4688999999999974333233322221 1
Q ss_pred ---------CChHHHHHHHHHHhhhhccCCCchhhHHhHHHhhhcCC
Q 011568 351 ---------EEIYEWQNALNELRGRLRSLNDVDAKVLGRLEFSYHRL 388 (483)
Q Consensus 351 ---------~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L 388 (483)
-..-+|+-++.+..+..-... .++.+..+-..-|+-|
T Consensus 237 ~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQ-s~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 237 EPFTANSQVIPKPDWEIYIQEIARVILKEQ-SPAKLLEVRGRLYELL 282 (351)
T ss_pred ccccccCCCCCCccHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHH
Confidence 124589999988876543222 2344444444444443
No 235
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.67 E-value=0.0029 Score=55.92 Aligned_cols=22 Identities=32% Similarity=0.289 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+|.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999887
No 236
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.65 E-value=0.0095 Score=51.70 Aligned_cols=115 Identities=12% Similarity=0.110 Sum_probs=59.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCC--CC---eEEEEEeCCCCCH--HHHHHHHHHHhcccCCCCCCHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNK--FN---DVIWVTVSQPLDL--IKLQTEIATALKQSLPENEDKVSRAGR 235 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f~---~~~wv~~~~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~ 235 (483)
..+++|+|+.|+|||||++.+...+....+. ++ .+.++ .+.... ..+...+.-. ....-..-+...-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 4689999999999999999998763211111 11 12222 222111 1222222110 11122333444555
Q ss_pred HHHHHhcCCeEEEEEeCCCCccC---ccccccCCCCCCCCcEEEEecCChhHh
Q 011568 236 LLRMLKAKEKFVLILDDMWEAFP---LEEVGIPEPNEENGCKLVITTRSCRVC 285 (483)
Q Consensus 236 l~~~l~~~~~~LlVlDdv~~~~~---~~~l~~~l~~~~~~s~ilvTtR~~~v~ 285 (483)
+.+.+.. ++-++++|+--..-+ ...+...+... +..+|++|.+....
T Consensus 102 laral~~-~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 102 FARLLLH-KPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHc-CCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 6677777 788999998753222 22222222111 35577777776554
No 237
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.65 E-value=0.15 Score=50.06 Aligned_cols=88 Identities=23% Similarity=0.225 Sum_probs=52.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeC-CCCCHHHHHHHHHHHhcccCCC---CCCHHHHHHHHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVS-QPLDLIKLQTEIATALKQSLPE---NEDKVSRAGRLL 237 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~il~~l~~~~~~---~~~~~~~~~~l~ 237 (483)
...+|..+|.-|+||||-+-.+++.+.+ ..+. +.-|++. ..+...+-++.+..+.+.+.-. ..++.+....-.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk--~~~k-vllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al 175 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK--KGKK-VLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAAL 175 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH--cCCc-eEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHH
Confidence 3678999999999999999999998543 2222 3344432 2455667778888887764322 233444444333
Q ss_pred HHHhcCCeEEEEEeC
Q 011568 238 RMLKAKEKFVLILDD 252 (483)
Q Consensus 238 ~~l~~~~~~LlVlDd 252 (483)
+..+....=++|+|-
T Consensus 176 ~~ak~~~~DvvIvDT 190 (451)
T COG0541 176 EKAKEEGYDVVIVDT 190 (451)
T ss_pred HHHHHcCCCEEEEeC
Confidence 333332233444444
No 238
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.64 E-value=0.012 Score=54.78 Aligned_cols=89 Identities=19% Similarity=0.280 Sum_probs=55.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhccc------CCCCCCHH----
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFN-DVIWVTVSQPL-DLIKLQTEIATALKQS------LPENEDKV---- 230 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~il~~l~~~------~~~~~~~~---- 230 (483)
-.-++|.|.+|+|||||++.+++. ...+|. .++++-+++.. .+.++..++...-... ...+....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~---i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN---IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH---HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 467899999999999999999998 333444 35666666644 4666766665431110 01111111
Q ss_pred --HHHHHHHHHHhc--CCeEEEEEeCCC
Q 011568 231 --SRAGRLLRMLKA--KEKFVLILDDMW 254 (483)
Q Consensus 231 --~~~~~l~~~l~~--~~~~LlVlDdv~ 254 (483)
...-.+.+++.+ ++.+||++||+-
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 122234455532 489999999985
No 239
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.63 E-value=0.015 Score=51.75 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=47.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCC--------CeEEEEEeCCCCCHHHHHHHHHHHhccc-------------
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKF--------NDVIWVTVSQPLDLIKLQTEIATALKQS------------- 222 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f--------~~~~wv~~~~~~~~~~~~~~il~~l~~~------------- 222 (483)
.++.|.|++|+|||+++.++...+.. ...| ..++|++..... .++.+.+.......
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~-g~~~~g~~~~~~~~Vl~i~~E~~~--~~~~~rl~~~~~~~~~~~~~~~~~~~~ 109 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALAT-GRPFLGELPPRPGRVLYISLEDSE--SQIARRLRALLQDYDDDANLFFVDLSN 109 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT----TT---------EEEEESSS-H--HHHHHHHHHHHTTS-HHHHHHHHHH--
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHh-CCccCCcccccCceEEEEeccCCH--HHHHHHHHHHhcccCCccceEEeeccc
Confidence 58999999999999999999887432 2222 248888876653 23333332211110
Q ss_pred ---------CCCCCCHHHHHHHHHHHHhc-CCeEEEEEeCCC
Q 011568 223 ---------LPENEDKVSRAGRLLRMLKA-KEKFVLILDDMW 254 (483)
Q Consensus 223 ---------~~~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~ 254 (483)
.............+.+.+.. .+.-++|||++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~ 151 (193)
T PF13481_consen 110 WGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQ 151 (193)
T ss_dssp E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GG
T ss_pred cccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHH
Confidence 00011123445566666665 456799999875
No 240
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.63 E-value=0.0024 Score=64.96 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=39.3
Q ss_pred cccccchHHHHHHHHHHh------cCCCceEEEEEcCCCCcHHHHHHHHHhhhc
Q 011568 141 NLAGKRTGKIVKEIWEDL------MGDKVSKIGVWGMGGIGKTTIMSNINNKLH 188 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 188 (483)
.++|.+ +.+++|++.| .+...+++.++||+|+||||||+.+.+-+.
T Consensus 77 d~yGle--e~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 77 EFYGME--EAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cccCcH--HHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 488988 8899999888 345678999999999999999999998743
No 241
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.62 E-value=0.009 Score=52.31 Aligned_cols=111 Identities=15% Similarity=0.065 Sum_probs=59.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE------eCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVT------VSQPLDLIKLQTEIATALKQSLPENEDKVSRAGR 235 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~ 235 (483)
...+++|.|+.|+|||||++.+..-+ . .....+++. +.+... -..-+...-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~-p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~ 81 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL---I-PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVA 81 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC---C-CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHH
Confidence 35799999999999999999988752 1 122222221 111110 1222334445
Q ss_pred HHHHHhcCCeEEEEEeCCCCccC---ccccccCCCC--CCCCcEEEEecCChhHhhhcCCceEec
Q 011568 236 LLRMLKAKEKFVLILDDMWEAFP---LEEVGIPEPN--EENGCKLVITTRSCRVCRSMKCKQVEI 295 (483)
Q Consensus 236 l~~~l~~~~~~LlVlDdv~~~~~---~~~l~~~l~~--~~~~s~ilvTtR~~~v~~~~~~~~~~l 295 (483)
+.+.+.. ++-++++|+.-..-+ ...+...+.. ...+..||++|.+...........+.+
T Consensus 82 laral~~-~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 145 (177)
T cd03222 82 IAAALLR-NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVF 145 (177)
T ss_pred HHHHHhc-CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEE
Confidence 6666766 788999998753322 1111111111 112256777777765554433333333
No 242
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.62 E-value=0.019 Score=51.57 Aligned_cols=46 Identities=20% Similarity=0.407 Sum_probs=34.9
Q ss_pred ccccccchHHHHHHHH----HHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 140 RNLAGKRTGKIVKEIW----EDLMGDKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~----~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..++|-+ +.++.++ .++.+....-|.+||.-|+|||+|++.+.+.+
T Consensus 60 ~~l~Gvd--~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVD--RQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCch--HHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 3588877 4454444 34555566779999999999999999999983
No 243
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.61 E-value=0.013 Score=55.01 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccC------------------
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSL------------------ 223 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~------------------ 223 (483)
..+++.|+|.+|+|||+++.++... .......++||+.... ..++.+...+ ++...
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~---~~~~ge~vlyvs~~e~--~~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~~ 95 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYE---GAREGEPVLYVSTEES--PEELLENARS-FGWDLEVYIEKGKLAILDAFLSE 95 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH---HHhcCCcEEEEEecCC--HHHHHHHHHH-cCCCHHHHhhcCCEEEEEccccc
Confidence 4689999999999999999999988 3344778999998764 3333333322 22100
Q ss_pred -C-------CCCCHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 011568 224 -P-------ENEDKVSRAGRLLRMLKAKEKFVLILDDMW 254 (483)
Q Consensus 224 -~-------~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~ 254 (483)
. ...+...+...+.+....-+..-+|+|.+-
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~ 134 (260)
T COG0467 96 KGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSIT 134 (260)
T ss_pred cccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 0 012345566666666665457788899875
No 244
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.61 E-value=0.0017 Score=53.45 Aligned_cols=21 Identities=43% Similarity=0.760 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 011568 166 IGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 166 i~I~G~~GiGKTtLa~~v~~~ 186 (483)
|+|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999988
No 245
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.60 E-value=0.014 Score=59.92 Aligned_cols=48 Identities=27% Similarity=0.345 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE
Q 011568 149 KIVKEIWEDLMG-----DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVT 201 (483)
Q Consensus 149 ~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 201 (483)
+-++++..||.. ...+++.++||+|+||||.++.+++.+ .|+..=|.+
T Consensus 26 kKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 26 KKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 567777788753 235799999999999999999999883 355555654
No 246
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.60 E-value=0.011 Score=54.24 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=33.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEI 215 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 215 (483)
..++.|.|++|+|||||+.+++....+ .. ..+++++... +..++++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~--~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQ--NG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh--CC-CcEEEEeCCC--CHHHHHHHH
Confidence 469999999999999999877766322 22 3467777433 455666665
No 247
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.59 E-value=0.0048 Score=54.62 Aligned_cols=45 Identities=20% Similarity=0.115 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHH
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTE 214 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 214 (483)
++.|.|++|+|||+|+.++.....+ .=..++|++... +..++...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEECCC--CHHHHHHH
Confidence 3689999999999999998877322 123478887754 34444433
No 248
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.58 E-value=0.0083 Score=52.36 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+++|.|+.|.|||||.+.++.-
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3478999999999999999999876
No 249
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.58 E-value=0.0041 Score=54.43 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.|.|.|++|+||||+|+.+.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999883
No 250
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.57 E-value=0.014 Score=53.65 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=72.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-----CCCHHHHHHHHHHHhcccC------CCC-CCH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-----PLDLIKLQTEIATALKQSL------PEN-EDK 229 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~il~~l~~~~------~~~-~~~ 229 (483)
...+++|+|.+|+|||||++.+..- ...... .++..-.+ .....+-..+++..++... +.. ...
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L---~~pt~G-~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGL---EEPTSG-EILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcC---cCCCCc-eEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 3578999999999999999999876 222222 33333211 2223445666666666421 212 222
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCCccCc---cc---cccCCCCCCCCcEEEEecCChhHhhhcCCc
Q 011568 230 VSRAGRLLRMLKAKEKFVLILDDMWEAFPL---EE---VGIPEPNEENGCKLVITTRSCRVCRSMKCK 291 (483)
Q Consensus 230 ~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~---~~---l~~~l~~~~~~s~ilvTtR~~~v~~~~~~~ 291 (483)
....-.+.+.+.- ++-|+|.|..-+..+. .. +...+. ...|-..++.|.+-.+...+...
T Consensus 114 QrQRi~IARALal-~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~isdr 179 (268)
T COG4608 114 QRQRIGIARALAL-NPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYISDR 179 (268)
T ss_pred hhhhHHHHHHHhh-CCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhccc
Confidence 3333446677777 8999999987643221 11 111111 23455678888887777776653
No 251
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.56 E-value=0.15 Score=49.02 Aligned_cols=49 Identities=22% Similarity=0.228 Sum_probs=35.1
Q ss_pred eEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHH
Q 011568 292 QVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAI 340 (483)
Q Consensus 292 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 340 (483)
++++++++.+|+..++...............+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 6899999999999999988766622211124556667777779999643
No 252
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0072 Score=58.47 Aligned_cols=87 Identities=20% Similarity=0.235 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCC-CCCHHHHHHHHHHHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPE-NEDKVSRAGRLLRML 240 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l 240 (483)
..++|.|-|.+|+|||||..+++.++... - .+++|+-....... +--+..|+...+. ..-.+...+.+.+.+
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~---~-~vLYVsGEES~~Qi---klRA~RL~~~~~~l~l~aEt~~e~I~~~l 164 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKR---G-KVLYVSGEESLQQI---KLRADRLGLPTNNLYLLAETNLEDIIAEL 164 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhc---C-cEEEEeCCcCHHHH---HHHHHHhCCCccceEEehhcCHHHHHHHH
Confidence 35799999999999999999999984322 2 68888865543222 2224455543221 111233344555566
Q ss_pred hcCCeEEEEEeCCCC
Q 011568 241 KAKEKFVLILDDMWE 255 (483)
Q Consensus 241 ~~~~~~LlVlDdv~~ 255 (483)
...++-|+|+|.+..
T Consensus 165 ~~~~p~lvVIDSIQT 179 (456)
T COG1066 165 EQEKPDLVVIDSIQT 179 (456)
T ss_pred HhcCCCEEEEeccce
Confidence 656899999999863
No 253
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.031 Score=50.30 Aligned_cols=130 Identities=13% Similarity=0.199 Sum_probs=71.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRML 240 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 240 (483)
.+.+=+.++|++|.|||-||+.++++ ..+.|+.+|.. ++.+..+. ........++-.-
T Consensus 179 aQPKGvlLygppgtGktLlaraVahh--------t~c~firvsgs----elvqk~ig----------egsrmvrelfvma 236 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHH--------TDCTFIRVSGS----ELVQKYIG----------EGSRMVRELFVMA 236 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhh--------cceEEEEechH----HHHHHHhh----------hhHHHHHHHHHHH
Confidence 35677899999999999999999987 23556666653 22222111 1122333333333
Q ss_pred hcCCeEEEEEeCCCCccC------------c----cccccCCCC--CCCCcEEEEecCChhHhhh----cCC--ceEecc
Q 011568 241 KAKEKFVLILDDMWEAFP------------L----EEVGIPEPN--EENGCKLVITTRSCRVCRS----MKC--KQVEIE 296 (483)
Q Consensus 241 ~~~~~~LlVlDdv~~~~~------------~----~~l~~~l~~--~~~~s~ilvTtR~~~v~~~----~~~--~~~~l~ 296 (483)
+..-+.+|+.|.+++.-. . -++...+.. ..+.-+||+.|..-++... .+. ..|+.+
T Consensus 237 rehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp 316 (404)
T KOG0728|consen 237 REHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFP 316 (404)
T ss_pred HhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCC
Confidence 344788889998874210 0 011111111 1345577776643333221 111 237777
Q ss_pred CCChHHHHHHHHHhhC
Q 011568 297 LLSKKEALNLFIDKVG 312 (483)
Q Consensus 297 ~L~~~ea~~Lf~~~~~ 312 (483)
+-+.+.-.++++-+..
T Consensus 317 ~p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 317 PPNEEARLDILKIHSR 332 (404)
T ss_pred CCCHHHHHHHHHHhhh
Confidence 7777766777765543
No 254
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.52 E-value=0.017 Score=57.84 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..++.++|++|+||||.+..++..+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 5799999999999999999888773
No 255
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.52 E-value=0.0085 Score=50.32 Aligned_cols=44 Identities=27% Similarity=0.339 Sum_probs=32.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccc
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQS 222 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~ 222 (483)
+|.|.|++|+||||+|+.+.+++ . +. .+ +...+++++++..|.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---g--l~---~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---G--LK---LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---C--Cc---ee------eccHHHHHHHHHcCCC
Confidence 68999999999999999999983 1 11 11 2346788888877763
No 256
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.011 Score=59.73 Aligned_cols=129 Identities=16% Similarity=0.226 Sum_probs=72.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
..=|.++||+|+|||-||++|+|. -+-+ |+++-.+ ++++..- + ..+...+.+++.-+.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE---ag~N-----FisVKGP--------ELlNkYV-----G-ESErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE---AGAN-----FISVKGP--------ELLNKYV-----G-ESERAVRQVFQRARA 602 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh---ccCc-----eEeecCH--------HHHHHHh-----h-hHHHHHHHHHHHhhc
Confidence 456889999999999999999998 3333 3444332 1222211 1 123344445555444
Q ss_pred CCeEEEEEeCCCCc-------cC------ccccccCCCC--CCCCcEEEEec-CChhHhhhc---CC--ceEeccCCChH
Q 011568 243 KEKFVLILDDMWEA-------FP------LEEVGIPEPN--EENGCKLVITT-RSCRVCRSM---KC--KQVEIELLSKK 301 (483)
Q Consensus 243 ~~~~LlVlDdv~~~-------~~------~~~l~~~l~~--~~~~s~ilvTt-R~~~v~~~~---~~--~~~~l~~L~~~ 301 (483)
.-+|+|+||.++.. .. ...+...+.. ...|.-||-.| |..-+...+ +- +.+.++.-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 58999999999732 11 1222222221 12344455544 443332221 11 23566667778
Q ss_pred HHHHHHHHhhCC
Q 011568 302 EALNLFIDKVGS 313 (483)
Q Consensus 302 ea~~Lf~~~~~~ 313 (483)
|-.++++.....
T Consensus 683 eR~~ILK~~tkn 694 (802)
T KOG0733|consen 683 ERVAILKTITKN 694 (802)
T ss_pred HHHHHHHHHhcc
Confidence 888888887763
No 257
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.51 E-value=0.0081 Score=59.07 Aligned_cols=87 Identities=20% Similarity=0.202 Sum_probs=51.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENE-DKVSRAGRLLRMLK 241 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~-~~~~~~~~l~~~l~ 241 (483)
..++.|.|.+|+|||||+.+++..+. ..-..++|++.... ..++ ..-+..++...+... ........+.+.+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 47999999999999999999988732 22246788876543 3332 222344554221100 00111233444444
Q ss_pred cCCeEEEEEeCCCC
Q 011568 242 AKEKFVLILDDMWE 255 (483)
Q Consensus 242 ~~~~~LlVlDdv~~ 255 (483)
..++-+||+|.+..
T Consensus 156 ~~~~~lVVIDSIq~ 169 (372)
T cd01121 156 ELKPDLVIIDSIQT 169 (372)
T ss_pred hcCCcEEEEcchHH
Confidence 44778999999853
No 258
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.50 E-value=0.0024 Score=53.83 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+|.+.|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999877
No 259
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.50 E-value=0.0024 Score=46.30 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+|+|.|.+|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999884
No 260
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.50 E-value=0.0099 Score=51.98 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=60.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccC--CCC---CC--eEEEEEeCCCCCHHHHHHHHHHHhcccCC---C---C-C
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEK--PNK---FN--DVIWVTVSQPLDLIKLQTEIATALKQSLP---E---N-E 227 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~---f~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~---~---~-~ 227 (483)
...+++|+|+.|+|||||.+.+..+-..+ ... |. .+.|+ .+ .+.+..++.... . . .
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 34789999999999999999885320011 111 11 12232 11 345666654221 1 1 1
Q ss_pred CHHHHHHHHHHHHhcCC--eEEEEEeCCCCccC---ccccccCCCC-CCCCcEEEEecCChhHhh
Q 011568 228 DKVSRAGRLLRMLKAKE--KFVLILDDMWEAFP---LEEVGIPEPN-EENGCKLVITTRSCRVCR 286 (483)
Q Consensus 228 ~~~~~~~~l~~~l~~~~--~~LlVlDdv~~~~~---~~~l~~~l~~-~~~~s~ilvTtR~~~v~~ 286 (483)
.-....-.+.+.+.. + +-++++|+.-..-+ ...+...+.. ...|..||++|.+.....
T Consensus 90 gGq~qrl~laral~~-~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 90 GGELQRVKLASELFS-EPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHHhh-CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 122333445566666 6 88999998753222 2222111111 123667888888766553
No 261
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.50 E-value=0.011 Score=62.90 Aligned_cols=147 Identities=13% Similarity=0.122 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAK 243 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 243 (483)
+-|.|+|++|+|||++|+.+++. ....| +.++.+. +.. ... ..... ....+.......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~---~~~~f---~~is~~~------~~~----~~~-----g~~~~-~~~~~f~~a~~~ 243 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGE---AKVPF---FTISGSD------FVE----MFV-----GVGAS-RVRDMFEQAKKA 243 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH---cCCCE---EEEehHH------hHH----hhh-----cccHH-HHHHHHHHHHhc
Confidence 34999999999999999999887 22222 2222221 110 000 01111 222223333333
Q ss_pred CeEEEEEeCCCCccC----------------ccccccCCC--CCCCCcEEEEecCChhHhhh----cC-C-ceEeccCCC
Q 011568 244 EKFVLILDDMWEAFP----------------LEEVGIPEP--NEENGCKLVITTRSCRVCRS----MK-C-KQVEIELLS 299 (483)
Q Consensus 244 ~~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~~s~ilvTtR~~~v~~~----~~-~-~~~~l~~L~ 299 (483)
.+++|+||+++.... +..+...+. ....+..+|.||........ .+ . ..+.++..+
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 789999999974310 111111111 11234445556655432221 11 1 357888888
Q ss_pred hHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCc
Q 011568 300 KKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRL 336 (483)
Q Consensus 300 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 336 (483)
.++-.+++..+........ ......+++.+.|.
T Consensus 324 ~~~R~~Il~~~~~~~~l~~----~~d~~~la~~t~G~ 356 (644)
T PRK10733 324 VRGREQILKVHMRRVPLAP----DIDAAIIARGTPGF 356 (644)
T ss_pred HHHHHHHHHHHhhcCCCCC----cCCHHHHHhhCCCC
Confidence 8888888887765432211 11234567777663
No 262
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.49 E-value=0.0022 Score=57.28 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
||+|.|++|+||||+|+.+...+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999985
No 263
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.49 E-value=0.0071 Score=50.71 Aligned_cols=42 Identities=26% Similarity=0.227 Sum_probs=31.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHH
Q 011568 166 IGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQT 213 (483)
Q Consensus 166 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 213 (483)
|.|+|++|+|||+||+.+++.+ =....-++++...+..+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~------~~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL------GRPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH------TCEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh------hcceEEEEecccccccccee
Confidence 6799999999999999999983 11244567777777766653
No 264
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.48 E-value=0.0035 Score=52.53 Aligned_cols=24 Identities=46% Similarity=0.596 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
--|.|+|++|+||||+++.+.+.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468999999999999999999884
No 265
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.47 E-value=0.026 Score=51.87 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+...+|+|.|++|+|||||++.+...+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999874
No 266
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.013 Score=59.48 Aligned_cols=88 Identities=20% Similarity=0.233 Sum_probs=49.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK 241 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (483)
..+|+|+|++|+||||++..++..+.. ......+..++... .....+.+....+.++.......+...+.. +.+.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~-~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~-aL~~l~ 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAA-QHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLD-LLERLR 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHH-HHHHhc
Confidence 479999999999999999998876322 11123455555432 222233344444444443332233333333 333333
Q ss_pred cCCeEEEEEeCCC
Q 011568 242 AKEKFVLILDDMW 254 (483)
Q Consensus 242 ~~~~~LlVlDdv~ 254 (483)
..-+|++|..-
T Consensus 428 --~~DLVLIDTaG 438 (559)
T PRK12727 428 --DYKLVLIDTAG 438 (559)
T ss_pred --cCCEEEecCCC
Confidence 35688899874
No 267
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.45 E-value=0.022 Score=53.65 Aligned_cols=89 Identities=24% Similarity=0.265 Sum_probs=50.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcccC---CCCCCHHHHH-HHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQSL---PENEDKVSRA-GRL 236 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~---~~~~~~~~~~-~~l 236 (483)
+.++|.++|++|+||||++..++..+.. .-..+.+++... .....+-+....+..+.+. ....+..... ..+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~---~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKK---QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 3579999999999999999999887421 223466666543 1112233344445544321 1122333322 333
Q ss_pred HHHHhcCCeEEEEEeCCC
Q 011568 237 LRMLKAKEKFVLILDDMW 254 (483)
Q Consensus 237 ~~~l~~~~~~LlVlDdv~ 254 (483)
...... ..-++++|-.-
T Consensus 148 ~~~~~~-~~D~ViIDT~G 164 (272)
T TIGR00064 148 QKAKAR-NIDVVLIDTAG 164 (272)
T ss_pred HHHHHC-CCCEEEEeCCC
Confidence 333333 55688899764
No 268
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.45 E-value=0.0025 Score=58.54 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhccc---------------CCC-
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQS---------------LPE- 225 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~---------------~~~- 225 (483)
..+++.|.|++|+|||+|+.++.....+. .=..++|++...+ ..++.+.+- .++.+ .+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~--~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN--FGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH--HT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh--cCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 35799999999999999999977552111 0235788887654 344444332 22210 000
Q ss_pred ----CCCHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 011568 226 ----NEDKVSRAGRLLRMLKAKEKFVLILDDMW 254 (483)
Q Consensus 226 ----~~~~~~~~~~l~~~l~~~~~~LlVlDdv~ 254 (483)
..+.......+.+.+...+...+|+|.+.
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 24567777777777766466899999874
No 269
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.45 E-value=0.011 Score=60.59 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=58.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccC---------------CCC
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSL---------------PEN 226 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~---------------~~~ 226 (483)
..+++.|.|++|+|||||+.+++....+ +=..+++++... +..++...+ +.++.+. +..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~---~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~ 335 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACA---NKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPES 335 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEccccc
Confidence 4589999999999999999999887322 224577777655 344555443 3444311 122
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 011568 227 EDKVSRAGRLLRMLKAKEKFVLILDDMW 254 (483)
Q Consensus 227 ~~~~~~~~~l~~~l~~~~~~LlVlDdv~ 254 (483)
...++....+.+.+...+.-++|+|.+.
T Consensus 336 ~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 336 AGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred CChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 2346677777777766567789999986
No 270
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.44 E-value=0.0026 Score=58.17 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.|.|.|++|+||||+|+.+.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999887
No 271
>PRK10867 signal recognition particle protein; Provisional
Probab=96.44 E-value=0.017 Score=57.77 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...+|.++|++|+||||.+..++..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999998888764
No 272
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.44 E-value=0.0031 Score=57.09 Aligned_cols=27 Identities=44% Similarity=0.556 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
....+|+|.|++|+|||||++.+...+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999883
No 273
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.41 E-value=0.0063 Score=58.11 Aligned_cols=85 Identities=14% Similarity=0.169 Sum_probs=53.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCC-----CCCCHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLP-----ENEDKVSRAGRLL 237 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 237 (483)
.+++-|+|+.|+||||||..+.....+ .-..++||...+.++. ..+..+|.+.+ .....++......
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~---~g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQK---QGGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---TT-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhc---ccceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHHH
Confidence 479999999999999999999887322 2345899998876654 33444444221 1234455556566
Q ss_pred HHHhcCCeEEEEEeCCCC
Q 011568 238 RMLKAKEKFVLILDDMWE 255 (483)
Q Consensus 238 ~~l~~~~~~LlVlDdv~~ 255 (483)
+.++.+..-++|+|.|-.
T Consensus 125 ~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHTTSESEEEEE-CTT
T ss_pred HHhhcccccEEEEecCcc
Confidence 666665667999999864
No 274
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.41 E-value=0.017 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+|+|.|++|+||||||+.+...+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999884
No 275
>PRK14974 cell division protein FtsY; Provisional
Probab=96.41 E-value=0.02 Score=55.33 Aligned_cols=90 Identities=24% Similarity=0.240 Sum_probs=50.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcccCCC---CCCHHHHHHHHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQSLPE---NEDKVSRAGRLL 237 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~---~~~~~~~~~~l~ 237 (483)
...+|.++|++|+||||++..++..+.. ..+ .++.+.... .....+-++.....++.+... ..+.........
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~--~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK--NGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH--cCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 3679999999999999999988877422 223 344444321 123344556667777653321 223333222222
Q ss_pred HHHhcCCeEEEEEeCCC
Q 011568 238 RMLKAKEKFVLILDDMW 254 (483)
Q Consensus 238 ~~l~~~~~~LlVlDdv~ 254 (483)
+.....+.-++++|..-
T Consensus 216 ~~~~~~~~DvVLIDTaG 232 (336)
T PRK14974 216 EHAKARGIDVVLIDTAG 232 (336)
T ss_pred HHHHhCCCCEEEEECCC
Confidence 22222133499999875
No 276
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.40 E-value=0.016 Score=52.22 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCC---c---cCccccccCCCCCCCCcEEEEecCChhHhhhcC
Q 011568 229 KVSRAGRLLRMLKAKEKFVLILDDMWE---A---FPLEEVGIPEPNEENGCKLVITTRSCRVCRSMK 289 (483)
Q Consensus 229 ~~~~~~~l~~~l~~~~~~LlVlDdv~~---~---~~~~~l~~~l~~~~~~s~ilvTtR~~~v~~~~~ 289 (483)
-+...-.+.+.+.. .+-+|+-|+--. . ...-.+...+ ....|..||+.|.+..++..+.
T Consensus 146 GqqQRVAIARAL~~-~P~iilADEPTgnLD~~t~~~V~~ll~~~-~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 146 GQQQRVAIARALIN-NPKIILADEPTGNLDSKTAKEVLELLREL-NKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHHhc-CCCeEEeeCccccCChHHHHHHHHHHHHH-HHhcCCEEEEEcCCHHHHHhCC
Confidence 34555667788888 899999997531 1 1111111111 1244778999999999988544
No 277
>PRK08233 hypothetical protein; Provisional
Probab=96.40 E-value=0.003 Score=55.68 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+|+|.|++|+||||||..+...+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999999874
No 278
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.38 E-value=0.07 Score=55.27 Aligned_cols=62 Identities=10% Similarity=0.247 Sum_probs=41.4
Q ss_pred cccccccchHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCC
Q 011568 139 TRNLAGKRTGKIVKEIWEDLMG--DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQP 205 (483)
Q Consensus 139 ~~~~vGr~~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 205 (483)
...++|.. ..+.++.+.+.. .....|.|+|..|+|||++|+.+.+. ... .-...+.|++...
T Consensus 186 ~~~iig~s--~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~-s~r--~~~p~v~v~c~~~ 249 (509)
T PRK05022 186 EGEMIGQS--PAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA-SPR--ADKPLVYLNCAAL 249 (509)
T ss_pred CCceeecC--HHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh-CCc--CCCCeEEEEcccC
Confidence 34589988 566665555532 23467889999999999999999887 221 1123455666553
No 279
>PTZ00301 uridine kinase; Provisional
Probab=96.37 E-value=0.0032 Score=56.70 Aligned_cols=25 Identities=36% Similarity=0.650 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+|+|.|++|+||||||+.+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999998774
No 280
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.36 E-value=0.034 Score=54.24 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCC----CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcccCC
Q 011568 150 IVKEIWEDLMGD----KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQSLP 224 (483)
Q Consensus 150 ~~~~l~~~L~~~----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~ 224 (483)
....+..++..+ +.++|.++||.|+||||-...++.++. ....-..+..|+... .-...+-++...+-++.+..
T Consensus 186 ~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~ 264 (407)
T COG1419 186 KLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE 264 (407)
T ss_pred HHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE
Confidence 444555555544 479999999999999765555554423 123334577787655 44566667777777877665
Q ss_pred CCCCHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 011568 225 ENEDKVSRAGRLLRMLKAKEKFVLILDDMW 254 (483)
Q Consensus 225 ~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~ 254 (483)
-..+..+....+.. +.+ +=+|.+|-+-
T Consensus 265 vv~~~~el~~ai~~-l~~--~d~ILVDTaG 291 (407)
T COG1419 265 VVYSPKELAEAIEA-LRD--CDVILVDTAG 291 (407)
T ss_pred EecCHHHHHHHHHH-hhc--CCEEEEeCCC
Confidence 55566665554443 332 3466667663
No 281
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.36 E-value=0.012 Score=62.59 Aligned_cols=84 Identities=13% Similarity=0.142 Sum_probs=57.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCC-----CCCCHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLP-----ENEDKVSRAGRLL 237 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 237 (483)
.+++-|+|++|+|||||+.+++.... ..=..++|+.....++. ..+++++.+.. ...+.+.....+.
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 58899999999999999988776522 12245799998776663 35666665332 1234455555555
Q ss_pred HHHhcCCeEEEEEeCCC
Q 011568 238 RMLKAKEKFVLILDDMW 254 (483)
Q Consensus 238 ~~l~~~~~~LlVlDdv~ 254 (483)
..+..++.-|||+|.+.
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 55655578899999986
No 282
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.35 E-value=0.014 Score=53.69 Aligned_cols=130 Identities=18% Similarity=0.217 Sum_probs=69.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCC----------C------CeEEEEE----------------eCCC----
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNK----------F------NDVIWVT----------------VSQP---- 205 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~----------f------~~~~wv~----------------~~~~---- 205 (483)
...+++|.|+.|+|||||.+.++.-+.-..+. + ..+.++. .++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 35799999999999999999998863211100 0 0122221 0110
Q ss_pred ----CC--HHHHHHHHHHHhccc------CCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccCcc------ccccCCC
Q 011568 206 ----LD--LIKLQTEIATALKQS------LPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFPLE------EVGIPEP 267 (483)
Q Consensus 206 ----~~--~~~~~~~il~~l~~~------~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~------~l~~~l~ 267 (483)
.+ -.+...+.++.++.. ...-..-+...-.+.+.|.. ++=+|+||.--+.-++. ++...+.
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ-~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~ 185 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQ-ETPILLLDEPTSHLDIAHQIEVLELLRDLN 185 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhc-CCCEEEeCCCccccCHHHHHHHHHHHHHHH
Confidence 01 112334445544431 11122233344455667777 78889999864332211 1111111
Q ss_pred CCCCCcEEEEecCChhHhhhcCCceE
Q 011568 268 NEENGCKLVITTRSCRVCRSMKCKQV 293 (483)
Q Consensus 268 ~~~~~s~ilvTtR~~~v~~~~~~~~~ 293 (483)
...|.-||+++.+.+.|...+.+.+
T Consensus 186 -~~~~~tvv~vlHDlN~A~ryad~~i 210 (258)
T COG1120 186 -REKGLTVVMVLHDLNLAARYADHLI 210 (258)
T ss_pred -HhcCCEEEEEecCHHHHHHhCCEEE
Confidence 2446779999999888877665443
No 283
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.34 E-value=0.007 Score=52.37 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=62.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC--CCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ--PLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRML 240 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 240 (483)
..+++|.|+.|+|||||.+.++... ......+++.-.. ..+..+.. -+.++.. .+-..-+...-.+.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~-~qLS~G~~qrl~laral 97 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDAR---RAGIAMV-YQLSVGERQMVEIARAL 97 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHHH---hcCeEEE-EecCHHHHHHHHHHHHH
Confidence 4689999999999999999998762 2233444443211 11111111 1112211 11222334444566667
Q ss_pred hcCCeEEEEEeCCCCccC---ccccccCCCC-CCCCcEEEEecCChhHhhhc
Q 011568 241 KAKEKFVLILDDMWEAFP---LEEVGIPEPN-EENGCKLVITTRSCRVCRSM 288 (483)
Q Consensus 241 ~~~~~~LlVlDdv~~~~~---~~~l~~~l~~-~~~~s~ilvTtR~~~v~~~~ 288 (483)
.. ++-++++|+.-..-+ ...+...+.. ...+..||++|.+.......
T Consensus 98 ~~-~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 148 (163)
T cd03216 98 AR-NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI 148 (163)
T ss_pred hc-CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 77 788999999753322 2222222211 12356788888876644433
No 284
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.33 E-value=0.027 Score=56.01 Aligned_cols=87 Identities=17% Similarity=0.169 Sum_probs=49.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK 241 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (483)
..+++++|+.|+||||++..+...+. .......+..+.... .....+-+....+.++.+.....+..+.... ...+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~-~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~a-l~~l~ 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAV-IRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLM-LHELR 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHH-HHHhc
Confidence 47999999999999999998876521 112223344554433 2234444555666666554433444443322 22333
Q ss_pred cCCeEEEEEeCC
Q 011568 242 AKEKFVLILDDM 253 (483)
Q Consensus 242 ~~~~~LlVlDdv 253 (483)
..-++++|..
T Consensus 269 --~~d~VLIDTa 278 (420)
T PRK14721 269 --GKHMVLIDTV 278 (420)
T ss_pred --CCCEEEecCC
Confidence 3456777765
No 285
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.32 E-value=0.012 Score=51.37 Aligned_cols=119 Identities=18% Similarity=0.143 Sum_probs=60.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcc--cCC---C---------CCC
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQ--SLP---E---------NED 228 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~--~~~---~---------~~~ 228 (483)
..+++|+|+.|+|||||++.++.... .....+++.-....+.. ..+-..++. +.+ . -..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK----PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 46899999999999999999987621 12333433211100000 011111111 000 0 011
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCCccC---ccccccCCCC-CCCCcEEEEecCChhHhhhcC
Q 011568 229 KVSRAGRLLRMLKAKEKFVLILDDMWEAFP---LEEVGIPEPN-EENGCKLVITTRSCRVCRSMK 289 (483)
Q Consensus 229 ~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~---~~~l~~~l~~-~~~~s~ilvTtR~~~v~~~~~ 289 (483)
-+...-.+.+.+.. ++-++++|+.-..-+ ...+...+.. ...|..+|++|.+........
T Consensus 99 G~~qrv~laral~~-~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~ 162 (173)
T cd03230 99 GMKQRLALAQALLH-DPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLC 162 (173)
T ss_pred HHHHHHHHHHHHHc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhC
Confidence 22233346666776 889999999754322 1112111111 122567888888766555433
No 286
>PRK07667 uridine kinase; Provisional
Probab=96.32 E-value=0.0052 Score=54.80 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=27.8
Q ss_pred HHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 152 KEIWEDLMG--DKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 152 ~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+.|.+.+.. +...+|+|.|.+|+||||+|+.+...+
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344455533 335799999999999999999999884
No 287
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.31 E-value=0.01 Score=55.59 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=63.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccC-C------CCCCHHHH
Q 011568 160 GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSL-P------ENEDKVSR 232 (483)
Q Consensus 160 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-~------~~~~~~~~ 232 (483)
..+..-++|.|+.|+|||||.+.+...+ . .....+++.-..- ...+-..++......-. . ...+....
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~---~-~~~G~i~~~g~~v-~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k 182 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARIL---S-TGISQLGLRGKKV-GIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPK 182 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCcc---C-CCCceEEECCEEe-ecchhHHHHHHHhcccccccccccccccccchH
Confidence 3445789999999999999999998873 2 2223344321110 00111123322221100 0 00111112
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCCccCccccccCCCCCCCCcEEEEecCChhHh
Q 011568 233 AGRLLRMLKAKEKFVLILDDMWEAFPLEEVGIPEPNEENGCKLVITTRSCRVC 285 (483)
Q Consensus 233 ~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~ilvTtR~~~v~ 285 (483)
...+...+....+-++++|.+-....+..+...+ ..|..+|+||....+.
T Consensus 183 ~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 183 AEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 2334444443378899999987665555443333 2477799999875553
No 288
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.31 E-value=0.0097 Score=50.75 Aligned_cols=116 Identities=20% Similarity=0.161 Sum_probs=62.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC---CCCHHHHHHHHHHHh-----cccC-CCCCCHHH---
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ---PLDLIKLQTEIATAL-----KQSL-PENEDKVS--- 231 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~il~~l-----~~~~-~~~~~~~~--- 231 (483)
..|-|++..|.||||+|...+-+. ....+ .+.++.+-+ ......++..+ ..+ +... ....+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra--~~~g~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA--LGHGY-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH--HHCCC-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHH
Confidence 478888999999999999887762 12222 355555433 33444444443 111 1100 00011111
Q ss_pred ----HHHHHHHHHhcCCeEEEEEeCCCCc-----cCccccccCCCCCCCCcEEEEecCChh
Q 011568 232 ----RAGRLLRMLKAKEKFVLILDDMWEA-----FPLEEVGIPEPNEENGCKLVITTRSCR 283 (483)
Q Consensus 232 ----~~~~l~~~l~~~~~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~s~ilvTtR~~~ 283 (483)
......+.+..+.-=|||||++-.. -..+.+...+.....+.-+|+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 2222334444446679999998532 222333333444455678999999854
No 289
>PRK06762 hypothetical protein; Provisional
Probab=96.29 E-value=0.0038 Score=54.22 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+|.|+|++|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999988
No 290
>PRK14527 adenylate kinase; Provisional
Probab=96.29 E-value=0.0066 Score=54.05 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+|.|+|++|+||||+|+.+++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999877
No 291
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.27 E-value=0.019 Score=48.76 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+|.|+|.+|+||||||+.+...+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998874
No 292
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.27 E-value=0.0038 Score=55.33 Aligned_cols=25 Identities=36% Similarity=0.296 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+.++|+|.|++|+||||+++.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999999877
No 293
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.27 E-value=0.021 Score=56.89 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...+|.++|++|+||||++..++..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998774
No 294
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.26 E-value=0.0039 Score=58.48 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcc
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHE 189 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 189 (483)
+.|.|+|.+|+||||+|+++...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999988543
No 295
>PF13245 AAA_19: Part of AAA domain
Probab=96.26 E-value=0.011 Score=43.67 Aligned_cols=25 Identities=28% Similarity=0.224 Sum_probs=19.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+.+++.|.|++|+|||+++......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3578889999999999665555544
No 296
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.23 E-value=0.0033 Score=50.11 Aligned_cols=22 Identities=36% Similarity=0.683 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 011568 166 IGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 166 i~I~G~~GiGKTtLa~~v~~~~ 187 (483)
|.|+|++|+|||+||..++..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999988875
No 297
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.22 E-value=0.0043 Score=56.06 Aligned_cols=26 Identities=42% Similarity=0.524 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...+|+|+|++|+|||||++.+...+
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999873
No 298
>PRK06217 hypothetical protein; Validated
Probab=96.21 E-value=0.0083 Score=53.01 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.|.|.|.+|+||||+|+.+...+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999883
No 299
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.20 E-value=0.014 Score=57.69 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=45.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK 241 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (483)
..++.|+|++|+||||++..++..+. ....+ .+..++... .....+.+....+.++.+.....+ ...+...+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~-~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~----~~~l~~~l~ 296 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYF-LHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD----IKKFKETLA 296 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-HhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeehHH----HHHHHHHHH
Confidence 46899999999999999999987621 11122 244444332 122333444444555543321111 223444443
Q ss_pred cCCeEEEEEeCC
Q 011568 242 AKEKFVLILDDM 253 (483)
Q Consensus 242 ~~~~~LlVlDdv 253 (483)
..+.-+|++|-.
T Consensus 297 ~~~~D~VLIDTa 308 (432)
T PRK12724 297 RDGSELILIDTA 308 (432)
T ss_pred hCCCCEEEEeCC
Confidence 324456889943
No 300
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.16 E-value=0.0072 Score=50.69 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ 204 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 204 (483)
++|.|+|+.|+|||||++.+.+.+. +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 5899999999999999999999953 24555555666554
No 301
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.03 Score=50.52 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=46.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 011568 160 GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRM 239 (483)
Q Consensus 160 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 239 (483)
-+..+-|.++|++|+|||-||+.++++ ....| +.+... ++.+.. ||. .......+++.
T Consensus 186 idpprgvllygppg~gktml~kava~~---t~a~f-----irvvgs----efvqky---lge-------gprmvrdvfrl 243 (408)
T KOG0727|consen 186 IDPPRGVLLYGPPGTGKTMLAKAVANH---TTAAF-----IRVVGS----EFVQKY---LGE-------GPRMVRDVFRL 243 (408)
T ss_pred CCCCcceEEeCCCCCcHHHHHHHHhhc---cchhe-----eeeccH----HHHHHH---hcc-------CcHHHHHHHHH
Confidence 355678899999999999999999998 44333 333221 122111 221 12334455555
Q ss_pred HhcCCeEEEEEeCCCC
Q 011568 240 LKAKEKFVLILDDMWE 255 (483)
Q Consensus 240 l~~~~~~LlVlDdv~~ 255 (483)
-+.+.+.+|++|.++.
T Consensus 244 akenapsiifideida 259 (408)
T KOG0727|consen 244 AKENAPSIIFIDEIDA 259 (408)
T ss_pred HhccCCcEEEeehhhh
Confidence 5556889999998873
No 302
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.14 E-value=0.024 Score=52.65 Aligned_cols=130 Identities=18% Similarity=0.183 Sum_probs=65.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCC--CC--eEEEEEeC----CCCCHHHHH--------------HHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNK--FN--DVIWVTVS----QPLDLIKLQ--------------TEIATALK 220 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f~--~~~wv~~~----~~~~~~~~~--------------~~il~~l~ 220 (483)
..+++|+|+.|+|||||++.+...+....+. ++ .+.++.-. ...++.+.+ .++++.++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 4689999999999999999998763211111 11 12222211 011233322 22333333
Q ss_pred ccC------CCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccCc---cccccCCCC--CCCCcEEEEecCChhHhhhcC
Q 011568 221 QSL------PENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFPL---EEVGIPEPN--EENGCKLVITTRSCRVCRSMK 289 (483)
Q Consensus 221 ~~~------~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~---~~l~~~l~~--~~~~s~ilvTtR~~~v~~~~~ 289 (483)
... ..-..-+...-.+...+.. ++-+++||+.-..-+. ..+...+.. ...+..||++|.+........
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~-~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~ 183 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSK-DADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLA 183 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhc-CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 211 0011122333345666666 8899999987543221 111111111 123567888888766555443
Q ss_pred CceE
Q 011568 290 CKQV 293 (483)
Q Consensus 290 ~~~~ 293 (483)
...+
T Consensus 184 d~i~ 187 (246)
T cd03237 184 DRLI 187 (246)
T ss_pred CEEE
Confidence 3333
No 303
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.13 E-value=0.015 Score=55.35 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHH
Q 011568 150 IVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNIN 184 (483)
Q Consensus 150 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~ 184 (483)
+-.--++.|.+++...|.+.|.+|+|||.||....
T Consensus 232 eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 232 EQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred HHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHH
Confidence 34445678889999999999999999999997654
No 304
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.12 E-value=0.0062 Score=51.71 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=26.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVT 201 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 201 (483)
..+|.|+|.+|+||||||+.+.+.+.. .-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~---~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFA---RGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHH---TTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEec
Confidence 368999999999999999999998532 223455655
No 305
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.12 E-value=0.024 Score=49.18 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=47.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC-
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAK- 243 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~- 243 (483)
++.|.|.+|+|||++|.++... ....++++.-...++. ++...|.+.-... +......+....+.+.+...
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~-em~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDD-EMAERIARHRKRR-PAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCH-HHHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcC
Confidence 3689999999999999999765 1235677776666544 3444443322222 22222233334444545331
Q ss_pred CeEEEEEeCCC
Q 011568 244 EKFVLILDDMW 254 (483)
Q Consensus 244 ~~~LlVlDdv~ 254 (483)
+.-.+++|.+.
T Consensus 73 ~~~~VLIDclt 83 (169)
T cd00544 73 PGDVVLIDCLT 83 (169)
T ss_pred CCCEEEEEcHh
Confidence 33479999873
No 306
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.12 E-value=0.045 Score=58.28 Aligned_cols=60 Identities=13% Similarity=0.209 Sum_probs=36.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcccC
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQSL 223 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~ 223 (483)
..+|+++|+.|+||||++..++..+... .....+..++... .....+-++...+.++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~-~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAR-EGADQLALLTTDSFRIGALEQLRIYGRILGVPV 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHH-cCCCeEEEecCcccchHHHHHHHHHHHhCCCCc
Confidence 4799999999999999999998773211 1112455555432 2224455555555555433
No 307
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.11 E-value=0.041 Score=50.48 Aligned_cols=40 Identities=28% Similarity=0.247 Sum_probs=30.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ 204 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 204 (483)
...++.|.|++|+|||+|+.++...... .-..++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~---~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR---DGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 3579999999999999999998765221 234678888744
No 308
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.10 E-value=0.011 Score=61.97 Aligned_cols=75 Identities=12% Similarity=0.144 Sum_probs=54.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATAL 219 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 219 (483)
..++|.+ +.++.+...+... +.+.|+|++|+||||+|+.+.+.+ ...+++..+|..- ...+...+++.+..++
T Consensus 31 ~~vigq~--~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l--~~~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 31 DQVIGQE--HAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELL--PKEELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred HHcCChH--HHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHc--ChHhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 3588887 6667666666555 479999999999999999999874 2334677888665 3446777777777665
Q ss_pred cc
Q 011568 220 KQ 221 (483)
Q Consensus 220 ~~ 221 (483)
|.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 54
No 309
>PRK03839 putative kinase; Provisional
Probab=96.09 E-value=0.005 Score=54.23 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.|.|.|++|+||||+++.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999998
No 310
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.07 E-value=0.0052 Score=57.85 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 152 KEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 152 ~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++.+...+ +-+.++|+.|+|||++++.+...
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhcc
Confidence 44555555443 56689999999999999998876
No 311
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.06 E-value=0.0087 Score=60.81 Aligned_cols=90 Identities=19% Similarity=0.168 Sum_probs=48.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeE-EEEEeCCC-CCHHHHHHHHHHHhcc-cCCCCCC----HHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDV-IWVTVSQP-LDLIKLQTEIATALKQ-SLPENED----KVSRAGR 235 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~-~wv~~~~~-~~~~~~~~~il~~l~~-~~~~~~~----~~~~~~~ 235 (483)
-.-.+|+|++|+|||||++.+++.+.. .+-++. +.+-+... -.+.++.+.+-..+-. ..+.... .....-.
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~--n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITT--NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhh--cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999997322 222333 34445543 3344443333111111 1111110 1122233
Q ss_pred HHHHHh-cCCeEEEEEeCCC
Q 011568 236 LLRMLK-AKEKFVLILDDMW 254 (483)
Q Consensus 236 l~~~l~-~~~~~LlVlDdv~ 254 (483)
+.+++. .++.+||++|++-
T Consensus 494 ~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHcCCCEEEEEeCch
Confidence 344443 3699999999985
No 312
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.06 E-value=0.0095 Score=59.82 Aligned_cols=42 Identities=14% Similarity=0.191 Sum_probs=35.9
Q ss_pred cccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 141 NLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.++|++ +.++.+...+..+ .-|.|.|++|+|||+||+.+...
T Consensus 21 ~i~gre--~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 21 GLYERS--HAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hccCcH--HHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHH
Confidence 389998 7788887777665 57889999999999999999987
No 313
>PRK05973 replicative DNA helicase; Provisional
Probab=96.06 E-value=0.034 Score=50.93 Aligned_cols=48 Identities=10% Similarity=0.040 Sum_probs=33.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEI 215 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 215 (483)
..++.|.|.+|+|||+++.++..... +. =..+++++.... ..++...+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a--~~-Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAM--KS-GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHH--hc-CCeEEEEEEeCC--HHHHHHHH
Confidence 47899999999999999999887622 22 235777776553 34444443
No 314
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.06 E-value=0.026 Score=56.17 Aligned_cols=89 Identities=13% Similarity=0.284 Sum_probs=53.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcccC------CCCCCHH----
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPL-DLIKLQTEIATALKQSL------PENEDKV---- 230 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~------~~~~~~~---- 230 (483)
....++|.|+.|+|||||++.+++. . ..+.++.+-++... .+.++..+++..-+... ..+....
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~---~--~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRG---T--TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccC---C--CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 3467999999999999999998865 1 22455556666543 45667776655422100 1111111
Q ss_pred --HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 011568 231 --SRAGRLLRMLKA-KEKFVLILDDMWE 255 (483)
Q Consensus 231 --~~~~~l~~~l~~-~~~~LlVlDdv~~ 255 (483)
...-.+.+++.+ ++++||++||+-.
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 112234455533 5999999999853
No 315
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.024 Score=59.08 Aligned_cols=90 Identities=17% Similarity=0.305 Sum_probs=56.3
Q ss_pred ccccchHHHHHHHHHHhcC---------CC---ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHH
Q 011568 142 LAGKRTGKIVKEIWEDLMG---------DK---VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLI 209 (483)
Q Consensus 142 ~vGr~~~~~~~~l~~~L~~---------~~---~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 209 (483)
+=|-+ +.+.+|++-+.- .+ .+=|.++|++|+|||-||++|+-.+ ..-|++|-.+
T Consensus 674 VGGLe--evK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--------sL~FlSVKGP---- 739 (953)
T KOG0736|consen 674 VGGLE--EVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--------SLNFLSVKGP---- 739 (953)
T ss_pred ccCHH--HHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc--------eeeEEeecCH----
Confidence 44444 566677765532 22 4568899999999999999999872 1345665443
Q ss_pred HHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 011568 210 KLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWE 255 (483)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~ 255 (483)
+++..-+ +.+ ++..+++.+.-+.-.+|+|.||.+++
T Consensus 740 ELLNMYV---------GqS-E~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ELLNMYV---------GQS-EENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHHHh---------cch-HHHHHHHHHHhhccCCeEEEeccccc
Confidence 2222111 122 34444555554445999999999985
No 316
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.04 E-value=0.059 Score=43.68 Aligned_cols=47 Identities=28% Similarity=0.345 Sum_probs=32.3
Q ss_pred cccccchH--HHHHHHHHHhcCC---CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 141 NLAGKRTG--KIVKEIWEDLMGD---KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 141 ~~vGr~~~--~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+++|.... ..++.|.+.+.+. ..=|++.+|.+|+|||.+++.+++.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 47776521 2234444455442 35688999999999999999998885
No 317
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.02 E-value=0.0091 Score=53.27 Aligned_cols=26 Identities=42% Similarity=0.634 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.+-+|+|.|.+|+||||+|+.++..+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999983
No 318
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.02 E-value=0.019 Score=51.78 Aligned_cols=87 Identities=18% Similarity=0.378 Sum_probs=52.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhccc------CCCCCCHHH----
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQP-LDLIKLQTEIATALKQS------LPENEDKVS---- 231 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~------~~~~~~~~~---- 231 (483)
..-++|.|.+|+|||+|+..+.+. . .-+.++++-+++. ..+.++.+++...-... ...+.....
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~---~--~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANN---Q--DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH---C--TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhc---c--cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 367899999999999999999998 2 2344577878764 45666666664431110 001111111
Q ss_pred --HHHHHHHHHhc-CCeEEEEEeCCC
Q 011568 232 --RAGRLLRMLKA-KEKFVLILDDMW 254 (483)
Q Consensus 232 --~~~~l~~~l~~-~~~~LlVlDdv~ 254 (483)
..-.+.+.+.+ ++++|+++||+-
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred hccchhhhHHHhhcCCceeehhhhhH
Confidence 11222333332 599999999984
No 319
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.00 E-value=0.021 Score=49.89 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|.|+.|+|||||.+.++..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999876
No 320
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.98 E-value=0.041 Score=52.03 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....+|+|.|+.|+||||+|+.+..-
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999887665
No 321
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.98 E-value=0.0042 Score=50.41 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhccCCCCCC
Q 011568 166 IGVWGMGGIGKTTIMSNINNKLHEKPNKFN 195 (483)
Q Consensus 166 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~ 195 (483)
|.|+|.+|+|||++|+.++.. ....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~---~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS---LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH---TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH---cCCcee
Confidence 679999999999999999988 555564
No 322
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.97 E-value=0.051 Score=50.30 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=34.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIA 216 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 216 (483)
..++.|.|++|+|||+++.+++.+... .+=..++|++... +..++...++
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~--~~g~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAK--KQGKPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCceEEEeCCC--CHHHHHHHHH
Confidence 469999999999999999998877322 1123577877655 3445555444
No 323
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.97 E-value=0.028 Score=52.37 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=58.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccC--CCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcccC------CCCCCH---
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEK--PNKFNDVIWVTVSQPL-DLIKLQTEIATALKQSL------PENEDK--- 229 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~------~~~~~~--- 229 (483)
.-.-++|.|.+|+|||+|+..+.++ ... +.+-+.++++-+++.. ...++..++...=.... ..++..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~-~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQ-AGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHh-hhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 3467899999999999999998877 221 1234668888887744 56777777765421100 011111
Q ss_pred ---HHHHHHHHHHHhc--CCeEEEEEeCCCC
Q 011568 230 ---VSRAGRLLRMLKA--KEKFVLILDDMWE 255 (483)
Q Consensus 230 ---~~~~~~l~~~l~~--~~~~LlVlDdv~~ 255 (483)
....-.+.+++.+ ++++|+++||+-.
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1222335566654 4899999999853
No 324
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.97 E-value=0.052 Score=51.25 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=36.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
..++.|.|++|+||||++.+++.... ..+=..++|++... +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 46899999999999999999987732 12124588888765 345566555554
No 325
>PRK04040 adenylate kinase; Provisional
Probab=95.96 E-value=0.0066 Score=53.79 Aligned_cols=24 Identities=38% Similarity=0.572 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.+|+|+|++|+||||+++.+.+.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999883
No 326
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.95 E-value=0.011 Score=52.21 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=29.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTV 202 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 202 (483)
.++|.|+|+.|+|||||+..+... ....|..+++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~---~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQE---FPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH---STTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh---cccccccceeecc
Confidence 478999999999999999999988 5566755555543
No 327
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.94 E-value=0.0054 Score=54.96 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+|+|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998873
No 328
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.93 E-value=0.31 Score=46.43 Aligned_cols=166 Identities=11% Similarity=0.067 Sum_probs=88.8
Q ss_pred HHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhhccC-------CCCCCeEEEEEe-CCCCCHHHHHHHHHHHhcc
Q 011568 151 VKEIWEDLMGDK-VSKIGVWGMGGIGKTTIMSNINNKLHEK-------PNKFNDVIWVTV-SQPLDLIKLQTEIATALKQ 221 (483)
Q Consensus 151 ~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------~~~f~~~~wv~~-~~~~~~~~~~~~il~~l~~ 221 (483)
++.+...+..+. .++..++|+.|.||+++|..+.+.+... ..+-+...++.. +....+.++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 444555565554 5678899999999999999998885111 111112333321 1122222222 33333322
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--ccccccCCCCCCCCcEEEEec-CChhHhhhc--CCceEecc
Q 011568 222 SLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP--LEEVGIPEPNEENGCKLVITT-RSCRVCRSM--KCKQVEIE 296 (483)
Q Consensus 222 ~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~--~~~l~~~l~~~~~~s~ilvTt-R~~~v~~~~--~~~~~~l~ 296 (483)
.. ...+++=++|+|+++.... ...+...+-....++.+|++| ....+.... .+..+++.
T Consensus 84 ~~----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~ 147 (299)
T PRK07132 84 SS----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVK 147 (299)
T ss_pred CC----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECC
Confidence 11 0112677888999864422 222322232223455555544 444444322 24568999
Q ss_pred CCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHH
Q 011568 297 LLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVT 342 (483)
Q Consensus 297 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 342 (483)
++++++..+.+... + . .++.+..++...+|.=.|+..
T Consensus 148 ~l~~~~l~~~l~~~--~--~-----~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 148 EPDQQKILAKLLSK--N--K-----EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCHHHHHHHHHHc--C--C-----ChhHHHHHHHHcCCHHHHHHH
Confidence 99999999887764 1 1 234466666667763345544
No 329
>PRK08149 ATP synthase SpaL; Validated
Probab=95.89 E-value=0.028 Score=55.99 Aligned_cols=89 Identities=12% Similarity=0.264 Sum_probs=53.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhccc-----C-CCCCCH-----
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQS-----L-PENEDK----- 229 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~-----~-~~~~~~----- 229 (483)
....++|+|.+|+|||||+..++.. . .-+.++...+.. ..++.++..+.+...... . ..+...
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~-~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEH-S----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcC-C----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 3468999999999999999988876 1 223333444443 445667777776643211 0 111111
Q ss_pred -HHHHHHHHHHHhc-CCeEEEEEeCCCC
Q 011568 230 -VSRAGRLLRMLKA-KEKFVLILDDMWE 255 (483)
Q Consensus 230 -~~~~~~l~~~l~~-~~~~LlVlDdv~~ 255 (483)
......+.+++.+ ++++||++||+-.
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 1222334444433 5999999999853
No 330
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.88 E-value=0.0079 Score=52.51 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...|.|+|++|+||||+|+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999988
No 331
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.87 E-value=0.041 Score=55.72 Aligned_cols=88 Identities=16% Similarity=0.178 Sum_probs=48.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK 241 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (483)
..|++++|+.|+||||++..++..+....+ ...+..++... .....+-++...+.++.......+..+....+ ..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G-~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHG-ASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELR 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcC-CCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhcc
Confidence 479999999999999999999987422211 12355565433 22344445555566555432222222222222 2233
Q ss_pred cCCeEEEEEeCCC
Q 011568 242 AKEKFVLILDDMW 254 (483)
Q Consensus 242 ~~~~~LlVlDdv~ 254 (483)
+ .-.+++|..-
T Consensus 334 d--~d~VLIDTaG 344 (484)
T PRK06995 334 N--KHIVLIDTIG 344 (484)
T ss_pred C--CCeEEeCCCC
Confidence 2 3467777753
No 332
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.87 E-value=0.039 Score=53.36 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 011568 166 IGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 166 i~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+++.|++|+||||+++.+.+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999884
No 333
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.86 E-value=0.03 Score=56.26 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=49.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPL-DLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK 241 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (483)
.+++.++|++|+||||++..++..+.. ...-..+..|+..... ...+-+....+.++.+.....+..+....+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~-~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYAL-LYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC
Confidence 369999999999999999998876320 1222346677754321 12233444444455443333333444333332 22
Q ss_pred cCCeEEEEEeCC
Q 011568 242 AKEKFVLILDDM 253 (483)
Q Consensus 242 ~~~~~LlVlDdv 253 (483)
..=+|++|..
T Consensus 299 --~~DlVlIDt~ 308 (424)
T PRK05703 299 --DCDVILIDTA 308 (424)
T ss_pred --CCCEEEEeCC
Confidence 3568899976
No 334
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.86 E-value=0.037 Score=51.59 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+++|+|+.|+|||||++.++..
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3478999999999999999999876
No 335
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.85 E-value=0.0075 Score=52.85 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999887
No 336
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.85 E-value=0.024 Score=57.47 Aligned_cols=82 Identities=17% Similarity=0.274 Sum_probs=51.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCC-----CCCCHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLP-----ENEDKVSRAGRLL 237 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 237 (483)
..++.|.|++|+|||||+.+++....+ .-..++|++.... ..++... ++.++.... ...+. ..+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~---~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l----~~i~ 149 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAA---AGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNL----EAIL 149 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCH----HHHH
Confidence 479999999999999999999887331 2235788886543 3333222 444543211 11222 3344
Q ss_pred HHHhcCCeEEEEEeCCC
Q 011568 238 RMLKAKEKFVLILDDMW 254 (483)
Q Consensus 238 ~~l~~~~~~LlVlDdv~ 254 (483)
+.+...+.-++|+|.+.
T Consensus 150 ~~i~~~~~~lVVIDSIq 166 (446)
T PRK11823 150 ATIEEEKPDLVVIDSIQ 166 (446)
T ss_pred HHHHhhCCCEEEEechh
Confidence 44444467799999986
No 337
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.85 E-value=0.015 Score=56.91 Aligned_cols=109 Identities=19% Similarity=0.218 Sum_probs=59.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK 241 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (483)
....|.|.|+.|+||||++..+.+.+ .......++. +..+... ..... ..+-.......+.......+...+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~evg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIEY--VHRNK-RSLINQREVGLDTLSFANALRAALR 193 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChhh--hccCc-cceEEccccCCCCcCHHHHHHHhhc
Confidence 35789999999999999999988873 2233334443 2222111 00000 0000000111122334555667777
Q ss_pred cCCeEEEEEeCCCCccCccccccCCCCCCCCcEEEEecCC
Q 011568 242 AKEKFVLILDDMWEAFPLEEVGIPEPNEENGCKLVITTRS 281 (483)
Q Consensus 242 ~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~ilvTtR~ 281 (483)
. .+=.|++|.+.+.+.+..... ....|..++.|...
T Consensus 194 ~-~pd~i~vgEird~~~~~~~l~---aa~tGh~v~~T~Ha 229 (343)
T TIGR01420 194 E-DPDVILIGEMRDLETVELALT---AAETGHLVFGTLHT 229 (343)
T ss_pred c-CCCEEEEeCCCCHHHHHHHHH---HHHcCCcEEEEEcC
Confidence 7 889999999987665543211 22345556656554
No 338
>PF13479 AAA_24: AAA domain
Probab=95.85 E-value=0.031 Score=50.68 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCC
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQP 205 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 205 (483)
-.+.|+|++|+||||+|..+ +..+++.....
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~-----------~k~l~id~E~g 34 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL-----------PKPLFIDTENG 34 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC-----------CCeEEEEeCCC
Confidence 46889999999999999866 34566666554
No 339
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.84 E-value=0.0075 Score=53.06 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+++|+|++|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999887
No 340
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.84 E-value=0.017 Score=53.64 Aligned_cols=63 Identities=22% Similarity=0.342 Sum_probs=43.6
Q ss_pred HHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 011568 152 KEIWEDLM--GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEI 215 (483)
Q Consensus 152 ~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 215 (483)
.+++..+. .++..+|+|+|.||+|||||.-.+...+ ...++--.++=|.-|.+++--.++-+=
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccccccH
Confidence 34555443 3567899999999999999999998884 334444456666667777655555433
No 341
>PRK00625 shikimate kinase; Provisional
Probab=95.81 E-value=0.0076 Score=52.55 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.|.|+|++|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999888
No 342
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.81 E-value=0.023 Score=50.63 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=65.8
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCe--EEEEEeCCCCCHHHHHHHH-HHHhcccCCCCCCHH
Q 011568 154 IWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFND--VIWVTVSQPLDLIKLQTEI-ATALKQSLPENEDKV 230 (483)
Q Consensus 154 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~i-l~~l~~~~~~~~~~~ 230 (483)
++..|-.....-..|.|++|+|||||.+.+++-+..-..+|.. +.-|.-+.. +..-+... ...++...+ ..+..
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersE--Iag~~~gvpq~~~g~R~d-Vld~c 204 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSE--IAGCLNGVPQHGRGRRMD-VLDPC 204 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccch--hhccccCCchhhhhhhhh-hcccc
Confidence 5555555555567899999999999999998875433345554 222221110 00000000 000011000 01111
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCCccCccccccCCCCCCCCcEEEEecCChhHhh
Q 011568 231 SRAGRLLRMLKAKEKFVLILDDMWEAFPLEEVGIPEPNEENGCKLVITTRSCRVCR 286 (483)
Q Consensus 231 ~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~ilvTtR~~~v~~ 286 (483)
-...-+.....+-.+=.+|+|.+-...+...+...+ ..|.+++.|..-..+..
T Consensus 205 pk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~ied 257 (308)
T COG3854 205 PKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGIED 257 (308)
T ss_pred hHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccHHH
Confidence 222223333333367899999998766655544433 45778877776544433
No 343
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.80 E-value=0.007 Score=53.36 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999987
No 344
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.80 E-value=0.007 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.512 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999876
No 345
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.0082 Score=54.43 Aligned_cols=72 Identities=18% Similarity=0.333 Sum_probs=47.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRML 240 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 240 (483)
+..+=|.++|++|.|||-+|+.|+|+ ... .|+.+-. .++....- .........|++.-
T Consensus 209 dppkgvllygppgtgktl~aravanr---tda-----cfirvig--------selvqkyv------gegarmvrelf~ma 266 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVANR---TDA-----CFIRVIG--------SELVQKYV------GEGARMVRELFEMA 266 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhcc---cCc-----eEEeehh--------HHHHHHHh------hhhHHHHHHHHHHh
Confidence 34567899999999999999999998 333 3333321 12222111 11234455666666
Q ss_pred hcCCeEEEEEeCCC
Q 011568 241 KAKEKFVLILDDMW 254 (483)
Q Consensus 241 ~~~~~~LlVlDdv~ 254 (483)
+.+|-|+|+||.++
T Consensus 267 rtkkaciiffdeid 280 (435)
T KOG0729|consen 267 RTKKACIIFFDEID 280 (435)
T ss_pred cccceEEEEeeccc
Confidence 66788999999886
No 346
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.79 E-value=0.045 Score=51.00 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=50.6
Q ss_pred ceEEEEEcCCCCcHHHHH-HHHHhhhccCCCCCCeE-EEEEeCCC-CCHHHHHHHHHHHhccc------CCCCCCHHH--
Q 011568 163 VSKIGVWGMGGIGKTTIM-SNINNKLHEKPNKFNDV-IWVTVSQP-LDLIKLQTEIATALKQS------LPENEDKVS-- 231 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~~~~~-~~~~~~~~~il~~l~~~------~~~~~~~~~-- 231 (483)
-.-++|.|.+|+|||+|| ..+.+. . +-+.+ +++-++.. ..+.++..++...-... ...+.....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~---~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ---K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh---c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 467899999999999996 555554 2 22333 56666654 44666777666432110 011111111
Q ss_pred ----HHHHHHHHHhc-CCeEEEEEeCCCC
Q 011568 232 ----RAGRLLRMLKA-KEKFVLILDDMWE 255 (483)
Q Consensus 232 ----~~~~l~~~l~~-~~~~LlVlDdv~~ 255 (483)
..-.+.+++.. ++.+||++||+-.
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr 172 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHH
Confidence 12233444443 5899999999854
No 347
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.78 E-value=0.021 Score=56.25 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+-|.++|++|+|||++|+.+...
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 367899999999999999999988
No 348
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.78 E-value=0.008 Score=52.99 Aligned_cols=25 Identities=32% Similarity=0.435 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+|+|-||-|+||||||+.+.+++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4789999999999999999999983
No 349
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.76 E-value=0.064 Score=53.57 Aligned_cols=88 Identities=8% Similarity=0.185 Sum_probs=52.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhccc------CCCCCCHH----
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPL-DLIKLQTEIATALKQS------LPENEDKV---- 230 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~------~~~~~~~~---- 230 (483)
....++|+|..|+|||||++.+++. . ..+.++++-++... .+.++..+.+..-+.. ...+....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~---~--~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARN---A--DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc---c--CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 3568999999999999999998876 2 22345556665533 4556666555432210 01111111
Q ss_pred --HHHHHHHHHHhc-CCeEEEEEeCCC
Q 011568 231 --SRAGRLLRMLKA-KEKFVLILDDMW 254 (483)
Q Consensus 231 --~~~~~l~~~l~~-~~~~LlVlDdv~ 254 (483)
...-.+.+++.+ ++++|+++||+-
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 222234455533 599999999985
No 350
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.75 E-value=0.011 Score=51.85 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...+|+|+|++|+||||+|+.+...+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999999884
No 351
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.75 E-value=0.038 Score=56.07 Aligned_cols=84 Identities=19% Similarity=0.278 Sum_probs=50.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCC-----CCCCHHHHHHHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLP-----ENEDKVSRAGRL 236 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 236 (483)
...++.|.|.+|+|||||+.+++..+... -..++|++.... ..++... +..++.... ...+. ..+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~EEs--~~qi~~r-a~rlg~~~~~l~~~~e~~~----~~I 162 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSGEES--LQQIKMR-AIRLGLPEPNLYVLSETNW----EQI 162 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECcCC--HHHHHHH-HHHcCCChHHeEEcCCCCH----HHH
Confidence 35799999999999999999998773221 135788876543 3333221 233332111 11222 334
Q ss_pred HHHHhcCCeEEEEEeCCCC
Q 011568 237 LRMLKAKEKFVLILDDMWE 255 (483)
Q Consensus 237 ~~~l~~~~~~LlVlDdv~~ 255 (483)
...+...+.-++|+|.+..
T Consensus 163 ~~~i~~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 163 CANIEEENPQACVIDSIQT 181 (454)
T ss_pred HHHHHhcCCcEEEEecchh
Confidence 4444444677999999863
No 352
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.74 E-value=0.0078 Score=50.84 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+|.|.|++|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999987
No 353
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.72 E-value=0.0084 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
++|+|+|+.|+|||||++.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 58999999999999999999886
No 354
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.71 E-value=0.021 Score=52.25 Aligned_cols=61 Identities=28% Similarity=0.367 Sum_probs=35.3
Q ss_pred HHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHH
Q 011568 151 VKEIWEDLM--GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQ 212 (483)
Q Consensus 151 ~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 212 (483)
..++++.+. ..+..+|+|+|+||+|||||...+...+.. +++--.++=|.-+.+++--.++
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~-~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRE-RGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHH-TT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhh-cCCceEEEEECCCCCCCCCccc
Confidence 334444443 246789999999999999999999888432 3333345555555555544443
No 355
>PRK14529 adenylate kinase; Provisional
Probab=95.69 E-value=0.041 Score=49.95 Aligned_cols=82 Identities=20% Similarity=0.149 Sum_probs=44.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhccCCCCCCe--EEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 011568 166 IGVWGMGGIGKTTIMSNINNKLHEKPNKFND--VIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAK 243 (483)
Q Consensus 166 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 243 (483)
|.|.|++|+||||+++.+...+. -.+.+. .+.-.+..........++++.+ +. ....+.....+.+.+...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~--~~~is~gdllr~~i~~~t~lg~~i~~~i~~-G~----lvpdei~~~lv~~~l~~~ 75 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD--LAHIESGAIFREHIGGGTELGKKAKEYIDR-GD----LVPDDITIPMILETLKQD 75 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC--CCCcccchhhhhhccCCChHHHHHHHHHhc-cC----cchHHHHHHHHHHHHhcc
Confidence 78899999999999999988831 122221 1111222233344444444433 11 122333444455555542
Q ss_pred CeEEEEEeCCC
Q 011568 244 EKFVLILDDMW 254 (483)
Q Consensus 244 ~~~LlVlDdv~ 254 (483)
..-=+|||+.-
T Consensus 76 ~~~g~iLDGfP 86 (223)
T PRK14529 76 GKNGWLLDGFP 86 (223)
T ss_pred CCCcEEEeCCC
Confidence 23458899874
No 356
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.69 E-value=0.0099 Score=49.74 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+|+|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999887
No 357
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.68 E-value=0.05 Score=47.02 Aligned_cols=118 Identities=19% Similarity=0.125 Sum_probs=62.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe---CCCCCHHHHHHHHHH---HhcccC-CCCCC-------
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTV---SQPLDLIKLQTEIAT---ALKQSL-PENED------- 228 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---~~~~~~~~~~~~il~---~l~~~~-~~~~~------- 228 (483)
...|-|++..|.||||.|.-.+-+. ....+. ++.+.+ ........++..+.- +++... ....+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra--~~~g~~-v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA--LGHGKK-VGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH--HHCCCe-EEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHH
Confidence 3678888889999999999887763 222333 333333 323344444444300 011110 00011
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCCc-----cCccccccCCCCCCCCcEEEEecCChh
Q 011568 229 KVSRAGRLLRMLKAKEKFVLILDDMWEA-----FPLEEVGIPEPNEENGCKLVITTRSCR 283 (483)
Q Consensus 229 ~~~~~~~l~~~l~~~~~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~s~ilvTtR~~~ 283 (483)
.........+.+..+.--|+|||.+-.. -..+.+...+.....+.-||+|-|+.+
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 1122233344455546679999998532 222233333334455678999999753
No 358
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.68 E-value=0.037 Score=55.51 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=30.6
Q ss_pred HHHHHHHHHhc-----CC--CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 149 KIVKEIWEDLM-----GD--KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 149 ~~~~~l~~~L~-----~~--~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+-+.++..||. .+ +.+++.|+||+|+||||.++.++..
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLske 133 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKE 133 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHh
Confidence 34567777876 33 3569999999999999999998877
No 359
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.023 Score=52.92 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=42.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
...++|||++|.|||-||+.|+.. ..-+|- .+..+. |... .......+++...+...+
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~---mg~nfl---~v~ss~----------lv~k------yiGEsaRlIRemf~yA~~ 223 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAAT---MGVNFL---KVVSSA----------LVDK------YIGESARLIRDMFRYARE 223 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHh---cCCceE---EeeHhh----------hhhh------hcccHHHHHHHHHHHHhh
Confidence 567999999999999999999988 333332 111111 0000 011223444444444444
Q ss_pred CCeEEEEEeCCC
Q 011568 243 KEKFVLILDDMW 254 (483)
Q Consensus 243 ~~~~LlVlDdv~ 254 (483)
..+|.|.+|+++
T Consensus 224 ~~pciifmdeiD 235 (388)
T KOG0651|consen 224 VIPCIIFMDEID 235 (388)
T ss_pred hCceEEeehhhh
Confidence 478999999987
No 360
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.68 E-value=0.019 Score=47.37 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+|.+.|.-|+||||+++.+++.+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999984
No 361
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.66 E-value=0.016 Score=51.62 Aligned_cols=49 Identities=22% Similarity=0.240 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEE
Q 011568 150 IVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVT 201 (483)
Q Consensus 150 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 201 (483)
+-...++.|. +..++.+.|++|+|||.||...+-+.. ..+.|+.++++.
T Consensus 8 ~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v-~~g~~~kiii~R 56 (205)
T PF02562_consen 8 EQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELV-KEGEYDKIIITR 56 (205)
T ss_dssp HHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHH-HTTS-SEEEEEE
T ss_pred HHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHH-HhCCCcEEEEEe
Confidence 3444555555 457999999999999999999887633 347888877765
No 362
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.66 E-value=0.015 Score=52.40 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+++|+|++|+|||||++.+.--
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 3578999999999999999998764
No 363
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.65 E-value=0.0097 Score=51.60 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 011568 166 IGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 166 i~I~G~~GiGKTtLa~~v~~~~ 187 (483)
|.|+|.+|+|||||++.+++.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999999885
No 364
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.63 E-value=0.0088 Score=52.59 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+|+|.|.+|+||||||+.+...+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999884
No 365
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.63 E-value=0.031 Score=57.94 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=30.7
Q ss_pred cccccchHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 141 NLAGKRTGKIVKEIWEDLM--GDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.++|.. ..+.++++.+. ...-..|.|+|..|+||+.+|+.+.+.
T Consensus 205 ~~ig~s--~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 205 QIVAVS--PKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred ceeECC--HHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 578876 45555554442 122355889999999999999997655
No 366
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.63 E-value=0.03 Score=56.11 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=25.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKF 194 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f 194 (483)
.+-.+|+|++|+||||+.+.++....-...++
T Consensus 101 g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~ 132 (614)
T KOG0927|consen 101 GRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI 132 (614)
T ss_pred CceEEEEcCCCCcHhHHHHHHhcCCCCCCccc
Confidence 46789999999999999999998743333333
No 367
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.63 E-value=0.033 Score=57.07 Aligned_cols=122 Identities=17% Similarity=0.208 Sum_probs=66.3
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCC--CHHHHHHHHHHHhcccCCC---
Q 011568 151 VKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPL--DLIKLQTEIATALKQSLPE--- 225 (483)
Q Consensus 151 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~--- 225 (483)
.++|++.+.++ .||.|+|..|+||||-..++... +.|...--|-+.++- ....+.+.+...++.....
T Consensus 361 R~~ll~~ir~n--~vvvivgETGSGKTTQl~QyL~e-----dGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924|consen 361 RDQLLSVIREN--QVVVIVGETGSGKTTQLAQYLYE-----DGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred HHHHHHHHhhC--cEEEEEecCCCCchhhhHHHHHh-----cccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence 45666666554 79999999999998865555443 123322244444443 3444556666666432211
Q ss_pred ---------C--------CCHHHHHHHHHHHHhcCCeEEEEEeCCCCccCcccc-----ccCCCCCCCCcEEEEecCC
Q 011568 226 ---------N--------EDKVSRAGRLLRMLKAKEKFVLILDDMWEAFPLEEV-----GIPEPNEENGCKLVITTRS 281 (483)
Q Consensus 226 ---------~--------~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l-----~~~l~~~~~~s~ilvTtR~ 281 (483)
. .+..-+.+.|...... +-..||+|.+++...-..+ ... ......-++||||-.
T Consensus 434 YsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~-kYSviImDEAHERslNtDilfGllk~~-larRrdlKliVtSAT 509 (1042)
T KOG0924|consen 434 YSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLD-KYSVIIMDEAHERSLNTDILFGLLKKV-LARRRDLKLIVTSAT 509 (1042)
T ss_pred eEEEeeecCCCceeEEEeccchHHHHHhhhhhhh-heeEEEechhhhcccchHHHHHHHHHH-HHhhccceEEEeecc
Confidence 0 1222333444444444 6779999999754321111 111 122346688888753
No 368
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.62 E-value=0.0093 Score=50.76 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 011568 165 KIGVWGMGGIGKTTIMSNIN 184 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~ 184 (483)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999987
No 369
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.62 E-value=0.098 Score=55.97 Aligned_cols=44 Identities=14% Similarity=0.200 Sum_probs=30.7
Q ss_pred cccccchHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 141 NLAGKRTGKIVKEIWEDLMG--DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.++|.. ..+.++.+.+.. .....|.|+|..|+||+++|+.+.+.
T Consensus 326 ~l~g~s--~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 326 HMPQDS--PQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred ceEECC--HHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 477776 445544444321 22344789999999999999999876
No 370
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.61 E-value=0.022 Score=51.79 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.|.|.|++|+||||+|+.++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999877
No 371
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.61 E-value=0.022 Score=48.72 Aligned_cols=30 Identities=40% Similarity=0.557 Sum_probs=26.1
Q ss_pred hcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 158 LMGDKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 158 L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+..+...+|.++|.+|+||||+|..+...+
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 345566899999999999999999999985
No 372
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.61 E-value=0.019 Score=49.01 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 149 KIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 149 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+.+++|..++.+ ++++++|..|+|||||+..+...
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhh
Confidence 356677777766 79999999999999999999877
No 373
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.61 E-value=0.011 Score=48.00 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 011568 166 IGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 166 i~I~G~~GiGKTtLa~~v~~~ 186 (483)
|.|+|..|+|||||.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999877
No 374
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.60 E-value=0.013 Score=52.86 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=27.1
Q ss_pred HHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 156 EDLMGDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 156 ~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+.+.+.++++|+++|+.|+|||||..++.+.
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3455668999999999999999999999887
No 375
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.60 E-value=0.012 Score=52.94 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+|+|+|++|+|||||++.++..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3578999999999999999999887
No 376
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.59 E-value=0.054 Score=54.15 Aligned_cols=88 Identities=16% Similarity=0.241 Sum_probs=50.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh-----cccCCCCCCHH------H
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATAL-----KQSLPENEDKV------S 231 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l-----~~~~~~~~~~~------~ 231 (483)
...++|+|+.|+|||||++.+... . .....+++..-....++.++....+... +.-...+.... .
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l---~-~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARA---D-AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC---C-CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 468999999999999999888765 1 1222344544334455665555444432 11111112111 1
Q ss_pred HHHHHHHHHhc-CCeEEEEEeCCC
Q 011568 232 RAGRLLRMLKA-KEKFVLILDDMW 254 (483)
Q Consensus 232 ~~~~l~~~l~~-~~~~LlVlDdv~ 254 (483)
....+.+++.+ ++.+||++||+-
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchH
Confidence 22233444433 589999999985
No 377
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.59 E-value=0.12 Score=49.81 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=36.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCC-CCHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQP-LDLIKLQTEIA 216 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il 216 (483)
...++|.|..|+|||+|++++.+. . +-+.++++-++.. ..+.+++.++-
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~-~----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKY-S----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhC-C----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 458999999999999999999887 2 3346788888764 34566666653
No 378
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.58 E-value=0.069 Score=53.31 Aligned_cols=89 Identities=9% Similarity=0.224 Sum_probs=54.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhccc------CCCCCCHH----
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQP-LDLIKLQTEIATALKQS------LPENEDKV---- 230 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~------~~~~~~~~---- 230 (483)
....++|.|..|+|||||.+.+++. . .-+.++++-++.. ..+.++....+..-+.. ...+....
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~---~--~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRS---A--EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcC---C--CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 3568999999999999999999887 2 2245677777664 34556665544331110 01111111
Q ss_pred --HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 011568 231 --SRAGRLLRMLKA-KEKFVLILDDMWE 255 (483)
Q Consensus 231 --~~~~~l~~~l~~-~~~~LlVlDdv~~ 255 (483)
.....+.+++.+ ++++||++||+-.
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 112234455533 5999999999853
No 379
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.58 E-value=0.014 Score=53.22 Aligned_cols=60 Identities=27% Similarity=0.338 Sum_probs=38.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe---------CCCCCHHHH--HHHHHHHhcccCC
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTV---------SQPLDLIKL--QTEIATALKQSLP 224 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---------~~~~~~~~~--~~~il~~l~~~~~ 224 (483)
...+|.++||+|+||||..++++.++. ..+....-|++ ..+.++.+. .++.+++.+....
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~---~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLH---AKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHh---hccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 356889999999999999999998842 22332233332 223345443 4677777665443
No 380
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.56 E-value=0.012 Score=50.92 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..++++|+|+.|+|||||++.+...+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45799999999999999999999884
No 381
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.55 E-value=0.011 Score=57.90 Aligned_cols=74 Identities=20% Similarity=0.311 Sum_probs=45.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcc---CCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHE---KPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLR 238 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~ 238 (483)
..+=+-|||..|.|||.|.-.+|+.++. .+-||. ++..++-+.+..-.... .....+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~----~~l~~va~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQD----DPLPQVAD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCC----ccHHHHHH
Confidence 3567899999999999999999998432 112232 34444443333211111 12334445
Q ss_pred HHhcCCeEEEEEeCCC
Q 011568 239 MLKAKEKFVLILDDMW 254 (483)
Q Consensus 239 ~l~~~~~~LlVlDdv~ 254 (483)
.+.+ +..||.||.+.
T Consensus 123 ~l~~-~~~lLcfDEF~ 137 (362)
T PF03969_consen 123 ELAK-ESRLLCFDEFQ 137 (362)
T ss_pred HHHh-cCCEEEEeeee
Confidence 5665 67799999875
No 382
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.081 Score=47.39 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCCccCcccccc------CCCCCCCCcEEEEecCChhHhhhcCC
Q 011568 229 KVSRAGRLLRMLKAKEKFVLILDDMWEAFPLEEVGI------PEPNEENGCKLVITTRSCRVCRSMKC 290 (483)
Q Consensus 229 ~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~------~l~~~~~~s~ilvTtR~~~v~~~~~~ 290 (483)
-+.....+.+.+.- ++-|.|||..++--+.+.+.. .+. ..++-+|+.|..+.++.....
T Consensus 148 GEkKR~EilQ~~~l-ePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~p 212 (251)
T COG0396 148 GEKKRNEILQLLLL-EPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKP 212 (251)
T ss_pred chHHHHHHHHHHhc-CCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCC
Confidence 34556667777777 899999999987655544321 122 346668888888888776654
No 383
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.54 E-value=0.061 Score=53.58 Aligned_cols=90 Identities=13% Similarity=0.221 Sum_probs=51.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccC------CCCCCHH-----
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSL------PENEDKV----- 230 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~------~~~~~~~----- 230 (483)
....++|.|..|+|||||++.+... .. ....++...-.+...+.++....+..-+... ..+....
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~---~~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARN---TD-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCC---CC-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 3468999999999999999888776 22 1222333333334456666665554322110 1111111
Q ss_pred -HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 011568 231 -SRAGRLLRMLKA-KEKFVLILDDMWE 255 (483)
Q Consensus 231 -~~~~~l~~~l~~-~~~~LlVlDdv~~ 255 (483)
.....+.+++.+ ++++||++||+-.
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122234555533 5899999999853
No 384
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.54 E-value=0.015 Score=52.74 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINN 185 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~ 185 (483)
.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 385
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.54 E-value=0.032 Score=52.46 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=28.8
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 153 EIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 153 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+..+++...+..+|.|.|.+|+|||||+..+.+.
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444556677899999999999999999999988
No 386
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.54 E-value=3.1 Score=42.00 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhc
Q 011568 150 IVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALK 220 (483)
Q Consensus 150 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 220 (483)
.++++..-+ ....++.|.|.+|+|||++|..++.... .... ..++|++.. .+..++...++....
T Consensus 183 ~LD~~~~G~--~~g~liviag~pg~GKT~~al~ia~~~a-~~~g-~~v~~fSlE--m~~~~l~~Rl~~~~~ 247 (421)
T TIGR03600 183 KLDRLTNGL--VKGDLIVIGARPSMGKTTLALNIAENVA-LREG-KPVLFFSLE--MSAEQLGERLLASKS 247 (421)
T ss_pred hHHHHhcCC--CCCceEEEEeCCCCCHHHHHHHHHHHHH-HhCC-CcEEEEECC--CCHHHHHHHHHHHHc
Confidence 455554322 2346899999999999999999987632 1222 346677654 467777777766543
No 387
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.53 E-value=0.044 Score=57.72 Aligned_cols=75 Identities=13% Similarity=0.197 Sum_probs=48.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATAL 219 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 219 (483)
..++|.+ +.++.+...+... +-+.++|++|+||||+++.+.+.+. ...|...+++.-+ ..+..++++.+...+
T Consensus 18 ~~viG~~--~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n~-~~~~~~~~~~v~~~~ 90 (608)
T TIGR00764 18 DQVIGQE--EAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPNP-EDPNMPRIVEVPAGE 90 (608)
T ss_pred hhccCHH--HHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeCC-CCCchHHHHHHHHhh
Confidence 3478887 5566565555554 3566999999999999999998842 2234444444333 234555677776666
Q ss_pred cc
Q 011568 220 KQ 221 (483)
Q Consensus 220 ~~ 221 (483)
+.
T Consensus 91 g~ 92 (608)
T TIGR00764 91 GR 92 (608)
T ss_pred ch
Confidence 53
No 388
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.51 E-value=0.071 Score=53.23 Aligned_cols=89 Identities=12% Similarity=0.272 Sum_probs=52.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcc------cCCCCCCHH----
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQ------SLPENEDKV---- 230 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~------~~~~~~~~~---- 230 (483)
....++|.|..|+|||||++.+.+. . ..+..++..++. ...+.+++.+....=.. -...+....
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~---~--~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNA---P--DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCC---C--CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 4568999999999999999988876 2 234455555554 44455666665431100 000111111
Q ss_pred --HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 011568 231 --SRAGRLLRMLKA-KEKFVLILDDMWE 255 (483)
Q Consensus 231 --~~~~~l~~~l~~-~~~~LlVlDdv~~ 255 (483)
.....+.+++.+ ++++||++||+-.
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 112234455543 5899999999853
No 389
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.044 Score=52.35 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+-|.++||+|+|||-||+.++.+
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Ake 150 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKE 150 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHH
Confidence 3567899999999999999999988
No 390
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.51 E-value=0.065 Score=55.61 Aligned_cols=86 Identities=17% Similarity=0.132 Sum_probs=55.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccC---------------CCCC
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSL---------------PENE 227 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~---------------~~~~ 227 (483)
..++.|.|++|+|||+|+.+++.... ..-..++|++.... ..++.+.+ ..++.+. +...
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~---~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 346 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAAC---RRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESY 346 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCcccC
Confidence 57899999999999999999987722 22356888887653 44444433 3443211 1112
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 011568 228 DKVSRAGRLLRMLKAKEKFVLILDDMW 254 (483)
Q Consensus 228 ~~~~~~~~l~~~l~~~~~~LlVlDdv~ 254 (483)
...+....+...+...+.-++|+|.+.
T Consensus 347 ~~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 347 GLEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 334556666666655466689999985
No 391
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.49 E-value=0.03 Score=55.18 Aligned_cols=45 Identities=20% Similarity=0.283 Sum_probs=33.0
Q ss_pred cccccchHHHHHHHHHHhcC---------C-----CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 141 NLAGKRTGKIVKEIWEDLMG---------D-----KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~---------~-----~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.++|.+ +.++.+..++.. . ...-|.++|++|+|||+||+.+...+
T Consensus 16 ~IiGQe--~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 16 YIIGQD--DAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ccCCHH--HHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 478887 555555544422 0 13678999999999999999999883
No 392
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.029 Score=51.71 Aligned_cols=70 Identities=19% Similarity=0.315 Sum_probs=46.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
.+=|.++|.+|.|||-||++|+|+ ....|-.+ +-.+++...- .+...+.+.+++.-..
T Consensus 219 PKGVIlyG~PGTGKTLLAKAVANq---TSATFlRv-------------vGseLiQkyl------GdGpklvRqlF~vA~e 276 (440)
T KOG0726|consen 219 PKGVILYGEPGTGKTLLAKAVANQ---TSATFLRV-------------VGSELIQKYL------GDGPKLVRELFRVAEE 276 (440)
T ss_pred CCeeEEeCCCCCchhHHHHHHhcc---cchhhhhh-------------hhHHHHHHHh------ccchHHHHHHHHHHHh
Confidence 566889999999999999999998 43333211 1122222211 1224566667776666
Q ss_pred CCeEEEEEeCCC
Q 011568 243 KEKFVLILDDMW 254 (483)
Q Consensus 243 ~~~~LlVlDdv~ 254 (483)
.-+.++++|.++
T Consensus 277 ~apSIvFiDEId 288 (440)
T KOG0726|consen 277 HAPSIVFIDEID 288 (440)
T ss_pred cCCceEEeehhh
Confidence 678899999886
No 393
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.49 E-value=0.053 Score=55.84 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCCccCc---cccccCCCCCCCCcEEEEecCChhHhhhcCCceEec
Q 011568 230 VSRAGRLLRMLKAKEKFVLILDDMWEAFPL---EEVGIPEPNEENGCKLVITTRSCRVCRSMKCKQVEI 295 (483)
Q Consensus 230 ~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~---~~l~~~l~~~~~~s~ilvTtR~~~v~~~~~~~~~~l 295 (483)
+...-.|.+.|-. ++=+|+||.--+.-+. .++...+. .-+| .+||.|.++.....+.+..+.+
T Consensus 158 ~r~Rv~LA~aL~~-~pDlLLLDEPTNHLD~~~i~WLe~~L~-~~~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 158 WRRRVALARALLE-EPDLLLLDEPTNHLDLESIEWLEDYLK-RYPG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred HHHHHHHHHHHhc-CCCEEEEcCCCcccCHHHHHHHHHHHH-hCCC-cEEEEeCCHHHHHHHhhheEEe
Confidence 3444556677777 8899999987654332 22333332 2345 6899999988777665544433
No 394
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.48 E-value=0.11 Score=52.47 Aligned_cols=92 Identities=15% Similarity=0.106 Sum_probs=53.9
Q ss_pred ceEEEEEcCCCCcHHHHH-HHHHhhhccC-----CCCCCeEEEEEeCCCCCHHHHHHHHHHHhcc-cC------CCCCCH
Q 011568 163 VSKIGVWGMGGIGKTTIM-SNINNKLHEK-----PNKFNDVIWVTVSQPLDLIKLQTEIATALKQ-SL------PENEDK 229 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~-~~------~~~~~~ 229 (483)
..-++|.|..|+|||+|| ..+.++ ..+ .++-..++++-+++..+...-+...+++-+. .. ..++..
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ-~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQ-VRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhh-hhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 467899999999999997 556666 321 1233567888888866543334444444431 10 011111
Q ss_pred H------HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 011568 230 V------SRAGRLLRMLKA-KEKFVLILDDMWE 255 (483)
Q Consensus 230 ~------~~~~~l~~~l~~-~~~~LlVlDdv~~ 255 (483)
. -....+.+.+.+ ++.+|+|+||+-.
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1 122234444433 5899999999853
No 395
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.025 Score=48.48 Aligned_cols=116 Identities=17% Similarity=0.147 Sum_probs=62.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCC--CHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPL--DLIKLQTEIATALKQSLPENEDKVSRAGRLLRML 240 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 240 (483)
..+++|+|+.|.|||||++.+...+ . .....+++...... ...+ ....++... +-..-+...-.+...+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~---~-~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~-qlS~G~~~r~~l~~~l 95 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL---K-PTSGEILIDGKDIAKLPLEE----LRRRIGYVP-QLSGGQRQRVALARAL 95 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---C-CCccEEEECCEEcccCCHHH----HHhceEEEe-eCCHHHHHHHHHHHHH
Confidence 3799999999999999999998762 1 23344444422111 1111 111122111 0122234444466666
Q ss_pred hcCCeEEEEEeCCCCccC---ccccccCCCC-CCCCcEEEEecCChhHhhhc
Q 011568 241 KAKEKFVLILDDMWEAFP---LEEVGIPEPN-EENGCKLVITTRSCRVCRSM 288 (483)
Q Consensus 241 ~~~~~~LlVlDdv~~~~~---~~~l~~~l~~-~~~~s~ilvTtR~~~v~~~~ 288 (483)
.. .+-++++|+.-..-+ ...+...+.. ...+..++++|.+.......
T Consensus 96 ~~-~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 96 LL-NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred hc-CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 66 788999999864322 2222111111 11245688888776665544
No 396
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.46 E-value=0.01 Score=51.36 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 011568 166 IGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 166 i~I~G~~GiGKTtLa~~v~~~ 186 (483)
|.|+|++|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999887
No 397
>PRK14530 adenylate kinase; Provisional
Probab=95.46 E-value=0.013 Score=53.36 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+.|.|+|++|+||||+|+.++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999887
No 398
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.45 E-value=0.02 Score=55.63 Aligned_cols=47 Identities=17% Similarity=0.353 Sum_probs=39.8
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhc
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLH 188 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 188 (483)
..+||.+ +.+..|+..+.+....-|.|.|+.|+||||+|+.+++-+.
T Consensus 17 ~~ivGq~--~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 17 TAIVGQE--EMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred HHHhChH--HHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4599998 7788888888887777788999999999999999987753
No 399
>PHA02244 ATPase-like protein
Probab=95.45 E-value=0.038 Score=53.64 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=30.1
Q ss_pred ccccchH--HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 142 LAGKRTG--KIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 142 ~vGr~~~--~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
++|.... .....+..++..+ ..|.|+|++|+|||+||+.+++.
T Consensus 98 ~ig~sp~~~~~~~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 98 KIASNPTFHYETADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred ccCCCHHHHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHH
Confidence 5554411 3444555565544 35778999999999999999987
No 400
>PRK05439 pantothenate kinase; Provisional
Probab=95.44 E-value=0.1 Score=49.91 Aligned_cols=27 Identities=26% Similarity=0.275 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...-+|+|.|.+|+||||+|+.+...+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999988763
No 401
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.44 E-value=0.11 Score=50.00 Aligned_cols=26 Identities=38% Similarity=0.519 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...+++++|++|+||||++..++..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999999884
No 402
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.44 E-value=0.03 Score=50.18 Aligned_cols=42 Identities=36% Similarity=0.550 Sum_probs=29.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCH
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDL 208 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 208 (483)
.|+|+|-||+||||+|..+...+.... .| .++-|....++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~-~~-~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKG-GY-NVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcC-Cc-eEEEEeCCCCCCh
Confidence 689999999999999999666643222 13 3566666655554
No 403
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.44 E-value=0.023 Score=52.04 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=22.7
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 152 KEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 152 ~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+.+...+.... +..|+|++|+|||+++..+...+
T Consensus 8 ~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 8 EAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 33434444332 78999999999998888887773
No 404
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.42 E-value=0.14 Score=46.19 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+++|.|+.|+|||||++.+..-
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3478999999999999999999765
No 405
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.41 E-value=0.015 Score=51.51 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3578999999999999999999877
No 406
>PRK06851 hypothetical protein; Provisional
Probab=95.41 E-value=0.21 Score=48.85 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=30.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeC
Q 011568 160 GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVS 203 (483)
Q Consensus 160 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 203 (483)
.+--+++.|.|++|+|||||+..++... ....++..++-|..
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a--~~~G~~v~~~hC~~ 252 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAA--EERGFDVEVYHCGF 252 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHH--HhCCCeEEEEeCCC
Confidence 4445889999999999999999999984 23445554444433
No 407
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.40 E-value=0.078 Score=53.40 Aligned_cols=91 Identities=22% Similarity=0.326 Sum_probs=57.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhccc------CCCCCCH-----
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQP-LDLIKLQTEIATALKQS------LPENEDK----- 229 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~------~~~~~~~----- 229 (483)
...-++|.|.+|+|||||+..+.+...+ .+-+.++++-++.. ..+.++..++...-... ...+.+.
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~--~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK--QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh--hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 3467999999999999999999887322 24566777777653 45667777765532110 0111221
Q ss_pred -HHHHHHHHHHHhc--CCeEEEEEeCCC
Q 011568 230 -VSRAGRLLRMLKA--KEKFVLILDDMW 254 (483)
Q Consensus 230 -~~~~~~l~~~l~~--~~~~LlVlDdv~ 254 (483)
......+.+++.+ ++++||++|++-
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 1223345556643 489999999984
No 408
>PRK13947 shikimate kinase; Provisional
Probab=95.39 E-value=0.014 Score=50.91 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
-|.|+|++|+||||+|+.+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999883
No 409
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.39 E-value=0.04 Score=59.64 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+..++.|+|+.|.|||||.+.+.-.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 3479999999999999999988655
No 410
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.39 E-value=0.015 Score=45.88 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNIN 184 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~ 184 (483)
...++|.|++|+|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999875
No 411
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.38 E-value=0.066 Score=48.94 Aligned_cols=47 Identities=17% Similarity=0.099 Sum_probs=33.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTE 214 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 214 (483)
..++.|.|.+|+|||+++.+++.... + .=..++|++...+ ..++.+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~--~-~g~~~~y~s~e~~--~~~l~~~ 62 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGL--K-NGEKAMYISLEER--EERILGY 62 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--h-CCCeEEEEECCCC--HHHHHHH
Confidence 57899999999999999999887621 1 2245788887653 4444433
No 412
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.38 E-value=0.013 Score=51.86 Aligned_cols=23 Identities=22% Similarity=0.470 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+++|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999776
No 413
>PRK05922 type III secretion system ATPase; Validated
Probab=95.37 E-value=0.12 Score=51.59 Aligned_cols=89 Identities=18% Similarity=0.285 Sum_probs=51.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcccC------CCCCCH-----
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQSL------PENEDK----- 229 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~------~~~~~~----- 229 (483)
....++|.|+.|+|||||.+.+... . ..+....+.++. .....+++.+....+.... ..+...
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~---~--~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKG---S--KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcc---C--CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 3467999999999999999999876 1 223334433433 3345556655554332211 011111
Q ss_pred -HHHHHHHHHHHhc-CCeEEEEEeCCCC
Q 011568 230 -VSRAGRLLRMLKA-KEKFVLILDDMWE 255 (483)
Q Consensus 230 -~~~~~~l~~~l~~-~~~~LlVlDdv~~ 255 (483)
....-.+.+++.+ ++++||++||+-.
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1222334555533 5999999999853
No 414
>PRK13949 shikimate kinase; Provisional
Probab=95.36 E-value=0.014 Score=50.80 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
-|.|+|++|+||||+++.+++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999988
No 415
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.35 E-value=0.016 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999987
No 416
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.34 E-value=0.06 Score=48.02 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+++|.|+.|+|||||.+.+..-
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3478999999999999999999876
No 417
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.32 E-value=0.044 Score=57.56 Aligned_cols=54 Identities=17% Similarity=0.114 Sum_probs=35.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIA 216 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 216 (483)
.++..|.|.+|+||||++..+...+.+....-...+.+.........++...+-
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 368999999999999999998877433221112356666555544555554443
No 418
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.32 E-value=0.023 Score=49.34 Aligned_cols=43 Identities=23% Similarity=0.306 Sum_probs=27.8
Q ss_pred ccccchHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 142 LAGKRTGKIVKEIWEDLMG--DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 142 ~vGr~~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+||.. ..+.++++.+.. .....|.|+|..|+||+.+|+.+.+.
T Consensus 1 liG~s--~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGES--PAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--S--HHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCC--HHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 35655 445555444421 22256779999999999999999886
No 419
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.32 E-value=0.082 Score=52.93 Aligned_cols=91 Identities=19% Similarity=0.296 Sum_probs=58.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhccc------CCCCCCH------
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPL-DLIKLQTEIATALKQS------LPENEDK------ 229 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~------~~~~~~~------ 229 (483)
..-++|.|.+|+|||+|+..+.+... +.+-+.++++-++... .+.+++.++...-... ...+...
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~--~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV--GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 46799999999999999999987722 2233667888887644 4666777766532110 0111111
Q ss_pred HHHHHHHHHHHhc--CCeEEEEEeCCCC
Q 011568 230 VSRAGRLLRMLKA--KEKFVLILDDMWE 255 (483)
Q Consensus 230 ~~~~~~l~~~l~~--~~~~LlVlDdv~~ 255 (483)
....-.+.+++++ ++++||++||+-.
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 1223345566654 5999999999853
No 420
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.30 E-value=0.082 Score=54.58 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=33.6
Q ss_pred cccccchHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 141 NLAGKRTGKIVKEIWEDLM--GDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.++|.. ..+.++.+.+. ......|.|.|..|+||+.+|+.+++.
T Consensus 213 ~iiG~S--~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 213 DLLGAS--APMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred heeeCC--HHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 488987 56666665553 223467899999999999999999876
No 421
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.29 E-value=0.015 Score=49.59 Aligned_cols=21 Identities=38% Similarity=0.445 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 011568 166 IGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 166 i~I~G~~GiGKTtLa~~v~~~ 186 (483)
|.|+|++|+||||+|+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999887
No 422
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.29 E-value=0.02 Score=52.69 Aligned_cols=33 Identities=33% Similarity=0.404 Sum_probs=22.4
Q ss_pred EEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeC
Q 011568 168 VWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVS 203 (483)
Q Consensus 168 I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 203 (483)
|+||+|+||||+++.+.+.+.. .-..++-|+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~---~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLES---NGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTT---T-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHh---ccCCceEEEcc
Confidence 6899999999999999998432 22345666653
No 423
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.28 E-value=0.046 Score=56.71 Aligned_cols=89 Identities=18% Similarity=0.091 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccC-----------------C
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSL-----------------P 224 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----------------~ 224 (483)
..+++.|.|.+|+|||+|+.++..... ...=..++|++.... ..++.+.+.. ++... .
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~--~~~ge~~lyis~ee~--~~~i~~~~~~-~g~d~~~~~~~g~l~~~~~~~~~ 104 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGI--KRFDEPGVFVTFEES--PEDIIRNVAS-FGWDLQKLIDEGKLFILDASPDP 104 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--HhcCCCEEEEEccCC--HHHHHHHHHH-cCCCHHHHhhCCeEEEEecCccc
Confidence 358999999999999999999876521 111245789887663 3444444322 22110 0
Q ss_pred ------CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 011568 225 ------ENEDKVSRAGRLLRMLKAKEKFVLILDDMWE 255 (483)
Q Consensus 225 ------~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~ 255 (483)
...+.......+.+.....+.-.+|+|.+..
T Consensus 105 ~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~ 141 (509)
T PRK09302 105 SEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEA 141 (509)
T ss_pred ccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHH
Confidence 0112344555666666554566799999863
No 424
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.28 E-value=0.017 Score=49.87 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..++.|.||+|+|||||++.+..+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999988
No 425
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.26 E-value=0.44 Score=48.13 Aligned_cols=118 Identities=15% Similarity=0.137 Sum_probs=62.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCC--------CC-----------eEEEEE-----eCCCCCHHHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNK--------FN-----------DVIWVT-----VSQPLDLIKLQTEIATA 218 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--------f~-----------~~~wv~-----~~~~~~~~~~~~~il~~ 218 (483)
-..|+++|+.|+|||||.+..+-++....+. |. ...|.. .-.+....+..+.++..
T Consensus 416 ~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgr 495 (614)
T KOG0927|consen 416 DSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGR 495 (614)
T ss_pred ccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHH
Confidence 4689999999999999999998875322221 11 000000 00012344556667777
Q ss_pred hcccCCCC------CCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC---ccccccCCCCCCCCcEEEEecCCh
Q 011568 219 LKQSLPEN------EDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP---LEEVGIPEPNEENGCKLVITTRSC 282 (483)
Q Consensus 219 l~~~~~~~------~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~---~~~l~~~l~~~~~~s~ilvTtR~~ 282 (483)
++...... .+..+....++.++.=..+-|||||.--+.-+ .+.+...+.. -.|. +|++|.+-
T Consensus 496 fgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe-~~Gg-vv~vSHDf 566 (614)
T KOG0927|consen 496 FGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINE-FPGG-VVLVSHDF 566 (614)
T ss_pred hCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhc-cCCc-eeeeechh
Confidence 66643221 12223333344444334899999998764433 2333333322 2343 56666553
No 426
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.25 E-value=0.12 Score=51.75 Aligned_cols=92 Identities=18% Similarity=0.285 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhcccC------CCCCCHH----
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQP-LDLIKLQTEIATALKQSL------PENEDKV---- 230 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~------~~~~~~~---- 230 (483)
...-++|.|.+|+|||||+..+..... .++=..++++-++.. ..+.+++.++...=.... ..+....
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 346799999999999999999887721 122235677777664 456777777754311100 1112211
Q ss_pred --HHHHHHHHHHhc--CCeEEEEEeCCCC
Q 011568 231 --SRAGRLLRMLKA--KEKFVLILDDMWE 255 (483)
Q Consensus 231 --~~~~~l~~~l~~--~~~~LlVlDdv~~ 255 (483)
...-.+.+++++ ++++||++||+-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 223345566644 5899999999853
No 427
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.23 E-value=0.11 Score=48.77 Aligned_cols=89 Identities=18% Similarity=0.268 Sum_probs=50.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPL-DLIKLQTEIATALKQSLPENEDKVSRAGRLLRML 240 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 240 (483)
+..+++++|++|+||||++..+...+.. .=..+.+++..... ....-+....+.++.+.....+.......+ +.+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~---~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l-~~l 149 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRAL-TYF 149 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHH-HHH
Confidence 4579999999999999999998877321 11245666654321 222223334444443332223444443333 333
Q ss_pred hc-CCeEEEEEeCCC
Q 011568 241 KA-KEKFVLILDDMW 254 (483)
Q Consensus 241 ~~-~~~~LlVlDdv~ 254 (483)
.. .+.-++++|..-
T Consensus 150 ~~~~~~D~ViIDt~G 164 (270)
T PRK06731 150 KEEARVDYILIDTAG 164 (270)
T ss_pred HhcCCCCEEEEECCC
Confidence 32 245788999874
No 428
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.22 E-value=0.12 Score=49.96 Aligned_cols=49 Identities=22% Similarity=0.269 Sum_probs=34.0
Q ss_pred ccccccccchHH-HHHHHHHHhcCCC--ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 138 TTRNLAGKRTGK-IVKEIWEDLMGDK--VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 138 ~~~~~vGr~~~~-~~~~l~~~L~~~~--~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....+||....+ ..--+++.+.+.. .+.|.|.|++|+|||+||..+.+.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~e 73 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKE 73 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHH
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHH
Confidence 345699987332 2334556666654 589999999999999999999998
No 429
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.22 E-value=0.047 Score=56.10 Aligned_cols=87 Identities=14% Similarity=0.049 Sum_probs=53.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccC------------------
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSL------------------ 223 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~------------------ 223 (483)
..+++.|.|++|+||||||.+++.. . ....=..++||+... +..++.+.+ ..++...
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~-g-~~~~ge~~lyvs~eE--~~~~l~~~~-~~~G~~~~~~~~~g~l~~~~~~~~~ 94 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYN-G-IIHFDEPGVFVTFEE--SPQDIIKNA-RSFGWDLQKLVDEGKLFILDASPDP 94 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH-H-HHhCCCCEEEEEEec--CHHHHHHHH-HHcCCCHHHHhhcCceEEEecCchh
Confidence 3589999999999999999998654 1 111114578888754 344444433 2222110
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCCeEEEEEeCC
Q 011568 224 -----PENEDKVSRAGRLLRMLKAKEKFVLILDDM 253 (483)
Q Consensus 224 -----~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv 253 (483)
....+.......+...+..+++-.+|||.+
T Consensus 95 ~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl 129 (484)
T TIGR02655 95 EGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSV 129 (484)
T ss_pred ccccccccCCHHHHHHHHHHHHHHhCCcEEEEeeh
Confidence 011234556666667776666778899954
No 430
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.21 E-value=0.04 Score=49.15 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+|+|.|+.|+||||+++.+.+.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999885
No 431
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.21 E-value=0.016 Score=52.50 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....|+|+|++|+|||||.+.++--
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998764
No 432
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.19 E-value=0.12 Score=47.80 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+..|+|++|+|||+|+..++..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5679999999999999999876
No 433
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.18 E-value=0.015 Score=50.18 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 011568 166 IGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 166 i~I~G~~GiGKTtLa~~v~~~ 186 (483)
|+|+|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999865
No 434
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.17 E-value=0.031 Score=54.16 Aligned_cols=44 Identities=18% Similarity=0.349 Sum_probs=36.5
Q ss_pred cccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 141 NLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+||.+ +.+..++-.+.+....-+.|.|++|+|||||++.+..-
T Consensus 5 ~ivgq~--~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~ 48 (337)
T TIGR02030 5 AIVGQD--EMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAAL 48 (337)
T ss_pred ccccHH--HHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHh
Confidence 488988 67777777777766667889999999999999999866
No 435
>PRK13975 thymidylate kinase; Provisional
Probab=95.17 E-value=0.018 Score=51.36 Aligned_cols=24 Identities=38% Similarity=0.379 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..|+|.|+.|+||||+++.+.+.+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999984
No 436
>PRK06761 hypothetical protein; Provisional
Probab=95.16 E-value=0.041 Score=51.73 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
++|.|.|++|+||||+++.+++.+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999984
No 437
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.16 E-value=0.0091 Score=53.64 Aligned_cols=24 Identities=21% Similarity=0.044 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..++.|.|+.|.||||+.+.+..-
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999988643
No 438
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.15 E-value=0.051 Score=52.90 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=43.9
Q ss_pred ccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHH
Q 011568 142 LAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQT 213 (483)
Q Consensus 142 ~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 213 (483)
++|.+ +....+...+..+ .-+.+.|++|+|||+||+.++..+ . ...++|.+.......++.-
T Consensus 26 ~~g~~--~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l---~---~~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 26 VVGDE--EVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL---G---LPFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeccH--HHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh---C---CCeEEEecCCCCCHHHhcC
Confidence 77766 5566655555544 568899999999999999999983 2 3356677776666655543
No 439
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.15 E-value=0.02 Score=51.68 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+|.|+|++|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4678999999999999999998754
No 440
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.15 E-value=0.039 Score=54.51 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 149 KIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 149 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+..+.+++.+.......+.|.|+||+|||+|.+.+.+.+
T Consensus 8 ~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 8 RVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 345566666666677889999999999999999999883
No 441
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.15 E-value=0.052 Score=50.89 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=51.4
Q ss_pred HHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHH
Q 011568 155 WEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAG 234 (483)
Q Consensus 155 ~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~ 234 (483)
+..+......+|.|.|+.|+||||++..+.+.+. ..-..++.+.-+....... ..++.... ........
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~---~~~~~iitiEdp~E~~~~~-----~~q~~v~~---~~~~~~~~ 140 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN---TPEKNIITVEDPVEYQIPG-----INQVQVNE---KAGLTFAR 140 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEEEECCCceecCCC-----ceEEEeCC---cCCcCHHH
Confidence 3333344457899999999999999998877732 1111222222111111100 01111111 11123445
Q ss_pred HHHHHHhcCCeEEEEEeCCCCccCcc
Q 011568 235 RLLRMLKAKEKFVLILDDMWEAFPLE 260 (483)
Q Consensus 235 ~l~~~l~~~~~~LlVlDdv~~~~~~~ 260 (483)
.+...++. .+-.|+++++.+.+...
T Consensus 141 ~l~~~lR~-~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 141 GLRAILRQ-DPDIIMVGEIRDAETAE 165 (264)
T ss_pred HHHHHhcc-CCCEEEeccCCCHHHHH
Confidence 55666666 78899999998876543
No 442
>PLN02165 adenylate isopentenyltransferase
Probab=95.14 E-value=0.023 Score=54.44 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=25.6
Q ss_pred hcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 158 LMGDKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 158 L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+.+....+|+|+|+.|+|||+||..++..+
T Consensus 38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 38 EQNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred ccCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 355556799999999999999999998873
No 443
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.13 E-value=0.1 Score=60.23 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+=|.++|++|+|||.||++++..
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999999988
No 444
>PRK15453 phosphoribulokinase; Provisional
Probab=95.13 E-value=0.022 Score=53.13 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
....+|+|.|.+|+||||+++.+.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998763
No 445
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.086 Score=54.64 Aligned_cols=149 Identities=15% Similarity=0.205 Sum_probs=79.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAK 243 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 243 (483)
.=|.++|++|+|||-||.+++.. . ..-+|++-.+ +++...-+ . .++..+.+...-+.-
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~-~-------~~~fisvKGP--------ElL~KyIG-----a-SEq~vR~lF~rA~~a 759 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASN-S-------NLRFISVKGP--------ELLSKYIG-----A-SEQNVRDLFERAQSA 759 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhh-C-------CeeEEEecCH--------HHHHHHhc-----c-cHHHHHHHHHHhhcc
Confidence 45889999999999999999887 1 1345666443 22222111 1 234445555555555
Q ss_pred CeEEEEEeCCCCccC-------------ccccccCCC--CCCCCcEEEE-ecCChhHhhh---cCC-ce-EeccCCChHH
Q 011568 244 EKFVLILDDMWEAFP-------------LEEVGIPEP--NEENGCKLVI-TTRSCRVCRS---MKC-KQ-VEIELLSKKE 302 (483)
Q Consensus 244 ~~~LlVlDdv~~~~~-------------~~~l~~~l~--~~~~~s~ilv-TtR~~~v~~~---~~~-~~-~~l~~L~~~e 302 (483)
++|+|+||..++..- ..++...+. .+-.|.-|+- |||..-+... .+. .. +.-+.-++.+
T Consensus 760 ~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~e 839 (952)
T KOG0735|consen 760 KPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPE 839 (952)
T ss_pred CCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHH
Confidence 999999999875311 122222221 1223444443 5665433221 111 22 2333344566
Q ss_pred HHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchH
Q 011568 303 ALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPL 338 (483)
Q Consensus 303 a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 338 (483)
-.++|.........+ .....+.++.+.+|..-
T Consensus 840 Rl~il~~ls~s~~~~----~~vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 840 RLEILQVLSNSLLKD----TDVDLECLAQKTDGFTG 871 (952)
T ss_pred HHHHHHHHhhccCCc----cccchHHHhhhcCCCch
Confidence 667776654432211 12345677778777653
No 446
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.11 E-value=0.047 Score=48.67 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..|+|.|+.|+||||+++.+.+.+
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999884
No 447
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.11 E-value=0.14 Score=51.28 Aligned_cols=89 Identities=10% Similarity=0.269 Sum_probs=51.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcccC------CCCCCHH----
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQSL------PENEDKV---- 230 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~------~~~~~~~---- 230 (483)
....++|+|..|+|||||++.+... . ..+.++...+.. .....++...+...-+... ..+....
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~---~--~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRF---T--EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC---C--CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 3467999999999999999988765 1 123333444443 3345666655554422210 0111111
Q ss_pred --HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 011568 231 --SRAGRLLRMLKA-KEKFVLILDDMWE 255 (483)
Q Consensus 231 --~~~~~l~~~l~~-~~~~LlVlDdv~~ 255 (483)
.....+.+++.+ ++++||++||+-.
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 122234455543 5899999999853
No 448
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.11 E-value=0.022 Score=51.04 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
....+|+|+|++|+||||||+.+...+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998873
No 449
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=95.10 E-value=0.047 Score=52.16 Aligned_cols=91 Identities=16% Similarity=0.304 Sum_probs=57.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhcc----------cCCCCC--CH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPL-DLIKLQTEIATALKQ----------SLPENE--DK 229 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~----------~~~~~~--~~ 229 (483)
..-|++.|-+|+|||.|.+++.+.+.+ .|=...+|.-++... .-.++..++.+.--. +.+... ..
T Consensus 147 GgKiGLFGGAGVGKTVl~~ELI~Nia~--~h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RV 224 (468)
T COG0055 147 GGKIGLFGGAGVGKTVLIQELINNIAK--EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRV 224 (468)
T ss_pred CceeeeeccCCccceeeHHHHHHHHHH--HcCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeee
Confidence 457899999999999999999998533 344456787776643 467788888765211 111110 00
Q ss_pred HHHHHHHHHHHhc--CCeEEEEEeCCCC
Q 011568 230 VSRAGRLLRMLKA--KEKFVLILDDMWE 255 (483)
Q Consensus 230 ~~~~~~l~~~l~~--~~~~LlVlDdv~~ 255 (483)
.-..-.+.+++++ ++.+|+.+||+..
T Consensus 225 altGlT~AEyfRD~~gqdVLlFIDNIfR 252 (468)
T COG0055 225 ALTGLTMAEYFRDEEGQDVLLFIDNIFR 252 (468)
T ss_pred hhhhhhHHHHhhcccCCeEEEEehhhhH
Confidence 1111123344443 4899999999963
No 450
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=95.09 E-value=0.16 Score=53.12 Aligned_cols=24 Identities=29% Similarity=0.536 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||++.++..
T Consensus 27 Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 27 GNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999876
No 451
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.09 E-value=0.018 Score=50.90 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...|++|.|++|+|||||.+.+..-
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3479999999999999999987553
No 452
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.09 E-value=0.021 Score=49.81 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...|.|+|+.|+||||+++.+.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 356999999999999999999987
No 453
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.08 E-value=0.017 Score=47.72 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=40.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
.+-|.|.|-+|+|||||+.+++... . .-|++++.-..-..+....=+.... ...+.+.....|-..+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~---~~~i~isd~vkEn~l~~gyDE~y~c---~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----G---LEYIEISDLVKENNLYEGYDEEYKC---HILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----C---CceEehhhHHhhhcchhcccccccC---ccccHHHHHHHHHHHHhc
Confidence 4678999999999999999999761 1 3466665532222222222111111 123555666666666655
No 454
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.07 E-value=2.8 Score=42.53 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=37.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATAL 219 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 219 (483)
..++.|.|.+|+|||+++.+++.+... ... ..++|++... +..++...++...
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~-~~g-~~vl~~SlEm--~~~~i~~R~~~~~ 247 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAI-KEG-KPVAFFSLEM--SAEQLAMRMLSSE 247 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHH-hCC-CeEEEEeCcC--CHHHHHHHHHHHh
Confidence 468999999999999999999877322 122 2467776544 5666666666544
No 455
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.03 E-value=0.081 Score=54.48 Aligned_cols=132 Identities=12% Similarity=0.129 Sum_probs=70.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC-----CeEEEEEeCC-----CCCH------------HHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKF-----NDVIWVTVSQ-----PLDL------------IKLQTEIATALK 220 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f-----~~~~wv~~~~-----~~~~------------~~~~~~il~~l~ 220 (483)
...|+|+|+.|+|||||.+.+........+.. -.+.++.-.. ..++ ....+..+..++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 46799999999999999999966532221111 1122222111 0011 233444444444
Q ss_pred ccCCCC------CCHHHHHH-HHHHHHhcCCeEEEEEeCCCCccCcc---ccccCCCCCCCCcEEEEecCChhHhhhcCC
Q 011568 221 QSLPEN------EDKVSRAG-RLLRMLKAKEKFVLILDDMWEAFPLE---EVGIPEPNEENGCKLVITTRSCRVCRSMKC 290 (483)
Q Consensus 221 ~~~~~~------~~~~~~~~-~l~~~l~~~~~~LlVlDdv~~~~~~~---~l~~~l~~~~~~s~ilvTtR~~~v~~~~~~ 290 (483)
-+.+.. -+..+..+ .|...+.. ++-+||||.--+.-+.+ .+...+.. -.| .||+.|.++........
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~-~pNvLiLDEPTNhLDi~s~~aLe~aL~~-f~G-tvl~VSHDr~Fl~~va~ 504 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQ-PPNLLLLDEPTNHLDIESLEALEEALLD-FEG-TVLLVSHDRYFLDRVAT 504 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhcc-CCCEEEEcCCCccCCHHHHHHHHHHHHh-CCC-eEEEEeCCHHHHHhhcc
Confidence 322211 12223333 33444444 89999999876543332 22222221 234 48888998888777666
Q ss_pred ceEeccC
Q 011568 291 KQVEIEL 297 (483)
Q Consensus 291 ~~~~l~~ 297 (483)
..+.+.+
T Consensus 505 ~i~~~~~ 511 (530)
T COG0488 505 RIWLVED 511 (530)
T ss_pred eEEEEcC
Confidence 5555553
No 456
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.02 E-value=0.2 Score=48.23 Aligned_cols=88 Identities=13% Similarity=0.243 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeC-CCCCHHHHHHHHHHHhccc------CCCCCCHH----
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVS-QPLDLIKLQTEIATALKQS------LPENEDKV---- 230 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~il~~l~~~------~~~~~~~~---- 230 (483)
....++|.|..|+|||||.+.+... .. -+.....-++ ....+.++....+..-+.. ...+....
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~---~~--~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARG---TT--ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCC---CC--CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 3468899999999999999988876 21 2233344444 3445666666665542210 01111111
Q ss_pred --HHHHHHHHHHhc-CCeEEEEEeCCC
Q 011568 231 --SRAGRLLRMLKA-KEKFVLILDDMW 254 (483)
Q Consensus 231 --~~~~~l~~~l~~-~~~~LlVlDdv~ 254 (483)
...-.+.+++.+ ++.+||++||+-
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 112223344432 589999999985
No 457
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.01 E-value=0.12 Score=51.48 Aligned_cols=88 Identities=13% Similarity=0.267 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhccc------CCCCCCHH----
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQP-LDLIKLQTEIATALKQS------LPENEDKV---- 230 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~------~~~~~~~~---- 230 (483)
....++|.|..|+|||||+..+.+. .. .+..+...++.. ..+.++...+...=... ...+....
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~---~~--~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARY---TE--ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcC---CC--CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 3467999999999999999888876 21 233444455443 34555555554431110 01111111
Q ss_pred --HHHHHHHHHHhc-CCeEEEEEeCCC
Q 011568 231 --SRAGRLLRMLKA-KEKFVLILDDMW 254 (483)
Q Consensus 231 --~~~~~l~~~l~~-~~~~LlVlDdv~ 254 (483)
...-.+.+++.+ ++++||++||+-
T Consensus 211 a~~~a~tiAEyfr~~G~~Vll~~Dslt 237 (411)
T TIGR03496 211 AAFYATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeChH
Confidence 122233444433 589999999985
No 458
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.00 E-value=0.068 Score=57.65 Aligned_cols=127 Identities=18% Similarity=0.144 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCC--
Q 011568 149 KIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPEN-- 226 (483)
Q Consensus 149 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~-- 226 (483)
..+.+|.+.+... .++.|.|+.|+||||-.-+++.+. . -.....+-+.=...-....+-..+.+.++......
T Consensus 53 ~~~~~i~~ai~~~--~vvii~getGsGKTTqlP~~lle~-g--~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VG 127 (845)
T COG1643 53 AVRDEILKAIEQN--QVVIIVGETGSGKTTQLPQFLLEE-G--LGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVG 127 (845)
T ss_pred HHHHHHHHHHHhC--CEEEEeCCCCCChHHHHHHHHHhh-h--cccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceee
Confidence 5678888888765 799999999999999999888771 1 11222444443344456667777777777643210
Q ss_pred -----------------CCHHHHHHHHH-HHHhcCCeEEEEEeCCCCccCcccc-----ccCCCCCCCCcEEEEecCC
Q 011568 227 -----------------EDKVSRAGRLL-RMLKAKEKFVLILDDMWEAFPLEEV-----GIPEPNEENGCKLVITTRS 281 (483)
Q Consensus 227 -----------------~~~~~~~~~l~-~~l~~~~~~LlVlDdv~~~~~~~~l-----~~~l~~~~~~s~ilvTtR~ 281 (483)
.+...+.+.+. ..+.. +--.+|+|.+++..--.++ ...+....+.-||||+|-.
T Consensus 128 Y~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls-~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSAT 204 (845)
T COG1643 128 YSIRFESKVSPRTRIKVMTDGILLREIQNDPLLS-GYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSAT 204 (845)
T ss_pred EEEEeeccCCCCceeEEeccHHHHHHHhhCcccc-cCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 12223333333 22222 5668999999864322111 1111222234799999854
No 459
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.98 E-value=0.13 Score=51.68 Aligned_cols=91 Identities=19% Similarity=0.289 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhccc------CCCCCCHH----
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQS------LPENEDKV---- 230 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~------~~~~~~~~---- 230 (483)
...-++|.|.+|+|||||+..+...... ++=..++++-++. ...+.+++.++...=... ...+....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~--~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAK--EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3467999999999999999998776221 1113466777765 445677777776542110 01111111
Q ss_pred --HHHHHHHHHHhc--CCeEEEEEeCCC
Q 011568 231 --SRAGRLLRMLKA--KEKFVLILDDMW 254 (483)
Q Consensus 231 --~~~~~l~~~l~~--~~~~LlVlDdv~ 254 (483)
...-.+.+++++ ++++||++|++-
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchH
Confidence 222335556532 599999999985
No 460
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.025 Score=54.27 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+-|.++||+|.|||-||+.|+..
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHh
Confidence 45889999999999999999988
No 461
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.98 E-value=0.076 Score=53.20 Aligned_cols=90 Identities=13% Similarity=0.200 Sum_probs=52.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccC------CCCCCH------
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSL------PENEDK------ 229 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~------~~~~~~------ 229 (483)
....++|.|..|+|||||++.++.. ... -..+++..-.+...+.++.+.+...-+... ..+...
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~---~~~-d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARG---TQC-DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC---CCC-CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 4578999999999999999999876 211 123444333444556666666654422100 111111
Q ss_pred HHHHHHHHHHHhc-CCeEEEEEeCCCC
Q 011568 230 VSRAGRLLRMLKA-KEKFVLILDDMWE 255 (483)
Q Consensus 230 ~~~~~~l~~~l~~-~~~~LlVlDdv~~ 255 (483)
....-.+.+++.+ ++++|+++||+-.
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1222234455543 5899999999853
No 462
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.97 E-value=0.08 Score=55.30 Aligned_cols=25 Identities=20% Similarity=0.415 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....++|+|+.|+|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999765
No 463
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=94.97 E-value=0.074 Score=49.89 Aligned_cols=91 Identities=20% Similarity=0.292 Sum_probs=53.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCC-------CeEEEEEeCC-CCCHHHHHHHHHHHhcccCCCCC--------
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKF-------NDVIWVTVSQ-PLDLIKLQTEIATALKQSLPENE-------- 227 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f-------~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~-------- 227 (483)
-++.|+|.||+|||||+...+=.+..=++-| ..+++|++.. ..++.+=++.+..+++.+..+..
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~ 169 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVS 169 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheeccccc
Confidence 3456779999999999987765432222223 3478888765 44566666777777765332110
Q ss_pred ------C--HHHHHHHHHHHHhcCCeEEEEEeCCC
Q 011568 228 ------D--KVSRAGRLLRMLKAKEKFVLILDDMW 254 (483)
Q Consensus 228 ------~--~~~~~~~l~~~l~~~~~~LlVlDdv~ 254 (483)
+ ...+..+....+...++-++|+|-.-
T Consensus 170 Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v 204 (402)
T COG3598 170 GAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFV 204 (402)
T ss_pred cCCCccccccHHHHHHHHHHHHHhCCCeEEEcchh
Confidence 0 01223333334444467899999753
No 464
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=94.96 E-value=0.082 Score=53.27 Aligned_cols=91 Identities=11% Similarity=0.107 Sum_probs=56.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC--eEEEEEeCC-CCCHHHHHHHHHHHhcccC------CCCCCH----
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFN--DVIWVTVSQ-PLDLIKLQTEIATALKQSL------PENEDK---- 229 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~~~-~~~~~~~~~~il~~l~~~~------~~~~~~---- 229 (483)
-.-++|.|..|+|||+|+..+.+. ....+.+. .++++-+++ ...+.+++..+...=.... ..+...
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~-~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQ-ATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHh-hcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 467899999999999999999887 32211111 456666665 4456777777764321100 011111
Q ss_pred --HHHHHHHHHHHh--cCCeEEEEEeCCC
Q 011568 230 --VSRAGRLLRMLK--AKEKFVLILDDMW 254 (483)
Q Consensus 230 --~~~~~~l~~~l~--~~~~~LlVlDdv~ 254 (483)
......+.++++ .++++||++||+-
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~DslT 248 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDMT 248 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcChh
Confidence 122334667776 3689999999985
No 465
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.96 E-value=0.023 Score=49.81 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+++|+|++|+|||||++.++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999987
No 466
>PLN02200 adenylate kinase family protein
Probab=94.95 E-value=0.024 Score=52.07 Aligned_cols=24 Identities=29% Similarity=0.123 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+|.|.|++|+||||+|+.+...
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999877
No 467
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.95 E-value=0.1 Score=45.30 Aligned_cols=82 Identities=17% Similarity=0.127 Sum_probs=44.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCC---CCCHHHHHHHHHHHH
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPE---NEDKVSRAGRLLRML 240 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~---~~~~~~~~~~l~~~l 240 (483)
.++.|.|.+|+|||++|..+...+ .. ..+++.-... .-.++.+.+.......... .+....+...+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~---~~---~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS---GL---QVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc---CC---CcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 368999999999999999998772 11 2344443333 3345555554443322111 111222333333223
Q ss_pred hcCCeEEEEEeCCC
Q 011568 241 KAKEKFVLILDDMW 254 (483)
Q Consensus 241 ~~~~~~LlVlDdv~ 254 (483)
. +.-++++|.+.
T Consensus 75 ~--~~~~VlID~Lt 86 (170)
T PRK05800 75 A--PGRCVLVDCLT 86 (170)
T ss_pred C--CCCEEEehhHH
Confidence 2 23378999873
No 468
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.059 Score=55.57 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=37.0
Q ss_pred ccccccchH-HHHHHHHHHhcCCC---------ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 140 RNLAGKRTG-KIVKEIWEDLMGDK---------VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 140 ~~~vGr~~~-~~~~~l~~~L~~~~---------~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+.|.+.. +++.+++++|.+.. ++=+.++|++|.|||.||++++..
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgE 206 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGE 206 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcc
Confidence 446776633 67788888887642 345889999999999999999988
No 469
>PRK00698 tmk thymidylate kinase; Validated
Probab=94.90 E-value=0.072 Score=47.85 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.+|+|.|+.|+||||+++.+.+.+
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999874
No 470
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=94.90 E-value=0.091 Score=52.48 Aligned_cols=89 Identities=13% Similarity=0.249 Sum_probs=48.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhccc------CCCCCC------
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQS------LPENED------ 228 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~------~~~~~~------ 228 (483)
....++|.|+.|+|||||+..+... . ..+..+...+.. ...+.++....+..-+.. .+.+..
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~-~----~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~ 228 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRY-T----QADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIK 228 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcc-c----CCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHH
Confidence 4578999999999999999988765 1 122222232322 333444444444332211 011111
Q ss_pred HHHHHHHHHHHHhc-CCeEEEEEeCCCC
Q 011568 229 KVSRAGRLLRMLKA-KEKFVLILDDMWE 255 (483)
Q Consensus 229 ~~~~~~~l~~~l~~-~~~~LlVlDdv~~ 255 (483)
.......+.+.+.. ++++||++||+-.
T Consensus 229 a~e~a~~iAEyfr~~g~~Vll~~Dsltr 256 (434)
T PRK07196 229 ATELCHAIATYYRDKGHDVLLLVDSLTR 256 (434)
T ss_pred HHHHHHHHHHHhhhccCCEEEeecchhH
Confidence 12223334444432 5899999999853
No 471
>PRK14532 adenylate kinase; Provisional
Probab=94.89 E-value=0.022 Score=50.52 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 011568 166 IGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 166 i~I~G~~GiGKTtLa~~v~~~ 186 (483)
|.|.|++|+||||+|+.++..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999999887
No 472
>PRK04182 cytidylate kinase; Provisional
Probab=94.89 E-value=0.024 Score=49.70 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999987
No 473
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.89 E-value=0.025 Score=49.21 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~ 23 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEK 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999887
No 474
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.88 E-value=0.026 Score=47.72 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+++.|+|.+|+||||+.+.+...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 579999999999999999988777
No 475
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.87 E-value=0.019 Score=63.00 Aligned_cols=195 Identities=18% Similarity=0.130 Sum_probs=95.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCC-CCCCeEEEEEeCCCC----CHH--HHHHHHHHHhcccCCCCCCHHHHHHHH
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKP-NKFNDVIWVTVSQPL----DLI--KLQTEIATALKQSLPENEDKVSRAGRL 236 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~~~----~~~--~~~~~il~~l~~~~~~~~~~~~~~~~l 236 (483)
.-+.|+|.+|+||||+...++-...... ..=+..+++.+.... ... .+..-+...+..... ........
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~----~~~~~~~~ 298 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI----AKQLIEAH 298 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC----cchhhHHH
Confidence 4789999999999999999887642211 111224455443111 111 122222222222211 11122222
Q ss_pred HHHHhcCCeEEEEEeCCCCccC------ccccccCCCCCCCCcEEEEecCChhHhhhcCC-ceEeccCCChHHHHHHHHH
Q 011568 237 LRMLKAKEKFVLILDDMWEAFP------LEEVGIPEPNEENGCKLVITTRSCRVCRSMKC-KQVEIELLSKKEALNLFID 309 (483)
Q Consensus 237 ~~~l~~~~~~LlVlDdv~~~~~------~~~l~~~l~~~~~~s~ilvTtR~~~v~~~~~~-~~~~l~~L~~~ea~~Lf~~ 309 (483)
.+.+.. .++++.+|.++.... ...+ ..+...-+.+.+|+|+|....-..... ..+++..+.++........
T Consensus 299 ~e~l~~-g~~llLlDGlDe~~~~~~~~~~~~i-~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~ 376 (824)
T COG5635 299 QELLKT-GKLLLLLDGLDELEPKNQRALIREI-NKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILY 376 (824)
T ss_pred HHHHhc-cchhhHhhccchhhhhhHHHHHHHH-HHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHH
Confidence 456666 899999999875321 1111 122233557899999987554333222 3356666665554433321
Q ss_pred hh-----CCC--CCCCC--Ccc---hHHHHHHHHHcCCchHHHHHHHHhhcC-----CCChHHHHHHHHHHh
Q 011568 310 KV-----GSS--ILQVP--TLN---EGIINEVVEECGRLPLAIVTVAASMSG-----EEEIYEWQNALNELR 364 (483)
Q Consensus 310 ~~-----~~~--~~~~~--~~~---~~~~~~i~~~~~G~Plai~~~~~~l~~-----~~~~~~w~~~l~~l~ 364 (483)
.. ... ....+ ... ..-...-.+.....|+.+.+.+..-.. .....-|+..++.+.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~ 448 (824)
T COG5635 377 QWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALL 448 (824)
T ss_pred HHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHH
Confidence 11 111 01110 000 001112233347789999888855442 123455666665554
No 476
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.86 E-value=0.022 Score=47.46 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||.+.++..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEEccCCCccccceeeeccc
Confidence 468999999999999999998776
No 477
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.86 E-value=0.032 Score=49.35 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.++|.|+|++|+||+||+..+...
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999887
No 478
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.86 E-value=0.043 Score=52.64 Aligned_cols=49 Identities=29% Similarity=0.285 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTE 214 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 214 (483)
.+++.+.|.||+||||+|...+-.+... ...++-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~---g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAES---GKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHc---CCcEEEEEeCCCCchHhhhcc
Confidence 4789999999999999999977663222 244777877776666666554
No 479
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.86 E-value=0.048 Score=52.34 Aligned_cols=94 Identities=17% Similarity=0.205 Sum_probs=60.9
Q ss_pred ccccccchHHHHHHHHHHhcC------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCC-------
Q 011568 140 RNLAGKRTGKIVKEIWEDLMG------DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPL------- 206 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~------- 206 (483)
..++|.+ +.++++++.+.. ..-+|+.++||.|.|||||+..+.+-+.+. .+|.-...+.
T Consensus 61 ~~~~G~~--~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y------~~Y~l~~~Pm~e~PL~L 132 (358)
T PF08298_consen 61 DEFYGME--ETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY------PIYTLKGCPMHEEPLHL 132 (358)
T ss_pred ccccCcH--HHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE------EEEEecCCccccChhhh
Confidence 3599988 889999988743 356899999999999999999998874322 3333221110
Q ss_pred CHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 207 DLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 207 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
=+.++-..+.+.++........+... .+|.+.+.+
T Consensus 133 ~P~~~r~~~~~~~~~~i~g~l~p~~~-~~L~~~y~G 167 (358)
T PF08298_consen 133 FPKELRREFEDELGIRIEGELCPWCR-KRLLEEYGG 167 (358)
T ss_pred CCHhHHHHHHHHhCcccCCCcCHHHH-HHHHHHhCC
Confidence 14455566677777755544444432 345455544
No 480
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.86 E-value=0.078 Score=49.32 Aligned_cols=77 Identities=17% Similarity=0.196 Sum_probs=44.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCH----HHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDK----VSRAGRLLR 238 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~----~~~~~~l~~ 238 (483)
.=+++.+|.+|+||.-.++.+++.+-+..-+-+.+- .....+ ..|..... +++..++..
T Consensus 110 PLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~---------------~fvat~--hFP~~~~ie~Yk~eL~~~v~~ 172 (344)
T KOG2170|consen 110 PLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVH---------------HFVATL--HFPHASKIEDYKEELKNRVRG 172 (344)
T ss_pred CeEEEecCCCCCchhHHHHHHHHHHHhccccchhHH---------------Hhhhhc--cCCChHHHHHHHHHHHHHHHH
Confidence 458999999999999999999988432221111111 111111 11122222 234444445
Q ss_pred HHhcCCeEEEEEeCCCCc
Q 011568 239 MLKAKEKFVLILDDMWEA 256 (483)
Q Consensus 239 ~l~~~~~~LlVlDdv~~~ 256 (483)
..+.-++.|+|+|+++..
T Consensus 173 ~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 173 TVQACQRSLFIFDEVDKL 190 (344)
T ss_pred HHHhcCCceEEechhhhc
Confidence 555458999999999853
No 481
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.84 E-value=0.023 Score=50.59 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 011568 166 IGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 166 i~I~G~~GiGKTtLa~~v~~~ 186 (483)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999887
No 482
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.84 E-value=0.023 Score=48.57 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
|++|+|+.|+|||||+..+...+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999984
No 483
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.82 E-value=0.72 Score=43.58 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 150 IVKEIWEDLMGDK-VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 150 ~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.-+.+...+..+. .....++|+.|+||+++|..++..+
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 3456666776665 4678899999999999999998885
No 484
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.81 E-value=0.021 Score=53.18 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.|.++|++|+||||+|+.+...+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999884
No 485
>PRK13695 putative NTPase; Provisional
Probab=94.80 E-value=0.04 Score=48.20 Aligned_cols=23 Identities=48% Similarity=0.726 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.|+|+|.+|+|||||++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998874
No 486
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.79 E-value=0.094 Score=52.39 Aligned_cols=92 Identities=13% Similarity=0.168 Sum_probs=57.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCC--CCCC---------eEEEEEeCCCCCHHHHHHHHHHHhc-ccC------
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKP--NKFN---------DVIWVTVSQPLDLIKLQTEIATALK-QSL------ 223 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~f~---------~~~wv~~~~~~~~~~~~~~il~~l~-~~~------ 223 (483)
...-++|.|.+|+|||||+..+.+. .... ...+ .+++.-++......+++...+..-+ ...
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~-~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQ-AGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHh-hccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 3467899999999999999999877 3210 0011 4667777777666776766666544 110
Q ss_pred CCCCCH------HHHHHHHHHHHh--cCCeEEEEEeCCC
Q 011568 224 PENEDK------VSRAGRLLRMLK--AKEKFVLILDDMW 254 (483)
Q Consensus 224 ~~~~~~------~~~~~~l~~~l~--~~~~~LlVlDdv~ 254 (483)
..+... ....-.+.+++. .++++||++||+-
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 111111 122233556666 2699999999985
No 487
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.79 E-value=0.17 Score=50.65 Aligned_cols=90 Identities=16% Similarity=0.221 Sum_probs=52.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccC------CCCCCH------
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSL------PENEDK------ 229 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~------~~~~~~------ 229 (483)
....++|.|..|+|||||+..++.. ... ...++...-.+...+.+++...+..-+... ..+.+.
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~---~~~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKN---AKA-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcc---CCC-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 3468899999999999999999876 211 122333322334667777776665532210 111111
Q ss_pred HHHHHHHHHHHhc-CCeEEEEEeCCCC
Q 011568 230 VSRAGRLLRMLKA-KEKFVLILDDMWE 255 (483)
Q Consensus 230 ~~~~~~l~~~l~~-~~~~LlVlDdv~~ 255 (483)
......+.+++.+ +++.||++||+-.
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchHH
Confidence 1122233344433 5899999999864
No 488
>PRK14531 adenylate kinase; Provisional
Probab=94.78 E-value=0.027 Score=49.70 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..|.|.|++|+||||+++.+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999887
No 489
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.76 E-value=0.26 Score=47.61 Aligned_cols=27 Identities=30% Similarity=0.629 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+...+|+|.|++|+|||||+..+...+
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999988874
No 490
>PRK13946 shikimate kinase; Provisional
Probab=94.75 E-value=0.031 Score=49.44 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+.|.++|++|+||||+++.+.+.+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999999883
No 491
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.74 E-value=0.044 Score=46.50 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+.|.||+|+|||||.+.+++-
T Consensus 29 Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhc
Confidence 357999999999999999999987
No 492
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.74 E-value=0.042 Score=49.10 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=25.5
Q ss_pred HHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 155 WEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 155 ~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+..+...+-+++.|.|++|+||||++..+...+
T Consensus 10 ~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 10 VRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 333433445789999999999999999988774
No 493
>PLN02796 D-glycerate 3-kinase
Probab=94.71 E-value=0.23 Score=47.92 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..-+|+|.|+.|+|||||++.+...+
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 34679999999999999999998874
No 494
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.71 E-value=0.13 Score=54.49 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....++|+|+.|+|||||++.+..-
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999998765
No 495
>PRK13948 shikimate kinase; Provisional
Probab=94.69 E-value=0.033 Score=48.99 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....|.++|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999988
No 496
>PRK13409 putative ATPase RIL; Provisional
Probab=94.68 E-value=0.094 Score=55.25 Aligned_cols=134 Identities=16% Similarity=0.149 Sum_probs=66.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCC--CC-eEEEEEeC----CCCCHHHHH-------------HHHHHHhcc
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNK--FN-DVIWVTVS----QPLDLIKLQ-------------TEIATALKQ 221 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--f~-~~~wv~~~----~~~~~~~~~-------------~~il~~l~~ 221 (483)
...+++|+|+.|+|||||++.++..+....+. ++ .+.++.-. ...++.+.+ .+++..++.
T Consensus 364 ~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l 443 (590)
T PRK13409 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQL 443 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCC
Confidence 34689999999999999999998762111111 11 01111100 011222222 233333332
Q ss_pred cC------CCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccCc---cccccCCCC--CCCCcEEEEecCChhHhhhcCC
Q 011568 222 SL------PENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFPL---EEVGIPEPN--EENGCKLVITTRSCRVCRSMKC 290 (483)
Q Consensus 222 ~~------~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~---~~l~~~l~~--~~~~s~ilvTtR~~~v~~~~~~ 290 (483)
.. ..-..-+...-.+.+.+.. ++-+++||+--..-+. ..+...+.. ...|..||++|.+...+.....
T Consensus 444 ~~~~~~~~~~LSGGe~QRvaiAraL~~-~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aD 522 (590)
T PRK13409 444 ERLLDKNVKDLSGGELQRVAIAACLSR-DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISD 522 (590)
T ss_pred HHHHhCCcccCCHHHHHHHHHHHHHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 10 0111223333345566666 8899999987533221 111111111 1235568888888766655544
Q ss_pred ceEecc
Q 011568 291 KQVEIE 296 (483)
Q Consensus 291 ~~~~l~ 296 (483)
..+-+.
T Consensus 523 rvivl~ 528 (590)
T PRK13409 523 RLMVFE 528 (590)
T ss_pred EEEEEc
Confidence 444443
No 497
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.68 E-value=0.04 Score=53.32 Aligned_cols=46 Identities=17% Similarity=0.335 Sum_probs=35.0
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..++|.+ +.++.+.-.+.+.+..=+.+.|++|+||||+|+.+..-+
T Consensus 8 ~~i~Gq~--~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQE--EMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHH--HHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3488988 666666655544444558999999999999999998774
No 498
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.68 E-value=0.051 Score=45.16 Aligned_cols=37 Identities=22% Similarity=0.413 Sum_probs=30.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCe--EEEEEe
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFND--VIWVTV 202 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~--~~wv~~ 202 (483)
..++.+.||+|+|||||..-+.-. ....|++ .+|++-
T Consensus 28 GeivtlMGPSGcGKSTLls~~~G~---La~~F~~~G~~~l~~ 66 (213)
T COG4136 28 GEIVTLMGPSGCGKSTLLSWMIGA---LAGQFSCTGELWLNE 66 (213)
T ss_pred CcEEEEECCCCccHHHHHHHHHhh---cccCcceeeEEEECC
Confidence 468999999999999999888777 4566765 788764
No 499
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=94.68 E-value=0.24 Score=49.64 Aligned_cols=89 Identities=11% Similarity=0.243 Sum_probs=51.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhccc------CCCCCCHH---
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQS------LPENEDKV--- 230 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~------~~~~~~~~--- 230 (483)
.....++|.|..|+|||||.+.+... .. .+......++. ...+.++..+........ ........
T Consensus 143 ~~Gq~~~I~G~sG~GKStLl~~I~~~---~~--~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~ 217 (422)
T TIGR02546 143 GEGQRIGIFAGAGVGKSTLLGMIARG---AS--ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERL 217 (422)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhCC---CC--CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHH
Confidence 34568899999999999999998876 22 23333344433 445656665554432110 01111111
Q ss_pred ---HHHHHHHHHHhc-CCeEEEEEeCCC
Q 011568 231 ---SRAGRLLRMLKA-KEKFVLILDDMW 254 (483)
Q Consensus 231 ---~~~~~l~~~l~~-~~~~LlVlDdv~ 254 (483)
.....+.+.+.+ +++.|+++|++-
T Consensus 218 ~~~~~a~~~AE~f~~~g~~Vl~~~Dslt 245 (422)
T TIGR02546 218 KAAYTATAIAEYFRDQGKRVLLMMDSLT 245 (422)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCch
Confidence 122233444433 589999999985
No 500
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.67 E-value=0.12 Score=50.79 Aligned_cols=41 Identities=24% Similarity=0.416 Sum_probs=30.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCC
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQP 205 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 205 (483)
.++.|.|.+|+|||.||..++..+ ..........+++....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l-~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL-QNSEEGKKVLYLCGNHP 42 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh-hccccCCceEEEEecch
Confidence 589999999999999999999984 11334555667766553
Done!