Query 011568
Match_columns 483
No_of_seqs 388 out of 2891
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 10:51:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011568.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011568hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.2E-49 7.4E-54 410.9 22.5 309 143-475 131-470 (549)
2 1vt4_I APAF-1 related killer D 100.0 3.1E-41 1.1E-45 355.4 19.1 284 142-470 130-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 6.4E-40 2.2E-44 372.9 28.0 308 139-474 123-450 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 6.2E-38 2.1E-42 329.2 26.3 304 139-472 123-448 (591)
5 2qen_A Walker-type ATPase; unk 99.8 3.8E-17 1.3E-21 159.5 22.9 293 138-470 10-349 (350)
6 2fna_A Conserved hypothetical 99.8 1.6E-16 5.4E-21 155.5 23.9 286 138-469 11-356 (357)
7 1w5s_A Origin recognition comp 99.7 3.4E-16 1.2E-20 156.4 17.7 303 140-465 22-387 (412)
8 2v1u_A Cell division control p 99.6 2.3E-13 8E-18 134.4 21.7 289 140-453 19-351 (387)
9 2qby_B CDC6 homolog 3, cell di 99.5 1.3E-12 4.5E-17 129.0 23.4 287 139-453 19-339 (384)
10 3qfl_A MLA10; coiled-coil, (CC 99.5 2.1E-14 7.1E-19 114.9 7.6 80 5-91 1-80 (115)
11 1fnn_A CDC6P, cell division co 99.5 1.3E-12 4.5E-17 129.2 20.4 289 140-454 17-352 (389)
12 2qby_A CDC6 homolog 1, cell di 99.5 1.9E-12 6.6E-17 127.7 21.4 292 139-453 19-348 (386)
13 1njg_A DNA polymerase III subu 99.3 1.1E-11 3.9E-16 113.8 14.5 194 140-347 23-231 (250)
14 2chg_A Replication factor C sm 99.3 1.7E-11 5.6E-16 111.0 14.5 182 140-344 17-204 (226)
15 1hqc_A RUVB; extended AAA-ATPa 99.3 2.4E-11 8.2E-16 117.0 12.1 172 140-347 12-214 (324)
16 1sxj_B Activator 1 37 kDa subu 99.1 2.4E-10 8.3E-15 109.7 12.2 185 140-346 21-212 (323)
17 3te6_A Regulatory protein SIR3 99.0 3.2E-09 1.1E-13 100.5 15.2 170 141-312 21-212 (318)
18 1iqp_A RFCS; clamp loader, ext 99.0 1.5E-09 5.2E-14 104.3 9.5 183 140-345 25-213 (327)
19 2chq_A Replication factor C sm 98.9 2E-08 6.8E-13 96.1 14.3 179 140-343 17-203 (319)
20 1jr3_A DNA polymerase III subu 98.8 2.3E-08 7.7E-13 98.0 13.2 191 140-344 16-221 (373)
21 1sxj_D Activator 1 41 kDa subu 98.7 9.5E-08 3.2E-12 92.8 13.5 191 140-343 37-234 (353)
22 1jbk_A CLPB protein; beta barr 98.7 1.6E-08 5.6E-13 88.8 6.7 46 140-187 22-67 (195)
23 3bos_A Putative DNA replicatio 98.6 2.4E-08 8.2E-13 91.3 5.9 173 140-344 28-217 (242)
24 3pfi_A Holliday junction ATP-d 98.6 1.1E-06 3.8E-11 84.7 17.5 168 140-344 29-227 (338)
25 3pvs_A Replication-associated 98.6 2.8E-07 9.6E-12 92.0 13.6 174 140-343 26-214 (447)
26 1sxj_E Activator 1 40 kDa subu 98.6 3.1E-07 1.1E-11 89.2 12.7 193 140-344 14-237 (354)
27 3h4m_A Proteasome-activating n 98.6 2.2E-07 7.6E-12 87.3 11.0 177 139-343 16-230 (285)
28 2z4s_A Chromosomal replication 98.6 5.8E-07 2E-11 89.8 14.2 183 140-342 105-304 (440)
29 3uk6_A RUVB-like 2; hexameric 98.5 6.6E-07 2.3E-11 87.4 12.9 195 139-343 43-302 (368)
30 1d2n_A N-ethylmaleimide-sensit 98.5 2.8E-06 9.5E-11 79.2 16.4 172 160-364 61-262 (272)
31 1sxj_A Activator 1 95 kDa subu 98.5 7.8E-07 2.7E-11 90.8 12.8 187 140-344 39-253 (516)
32 1xwi_A SKD1 protein; VPS4B, AA 98.5 9.9E-06 3.4E-10 77.4 19.5 179 140-345 12-224 (322)
33 3d8b_A Fidgetin-like protein 1 98.5 4E-06 1.4E-10 81.4 17.0 178 140-345 84-296 (357)
34 3syl_A Protein CBBX; photosynt 98.5 3E-07 1E-11 87.5 8.8 150 141-313 32-219 (309)
35 3b9p_A CG5977-PA, isoform A; A 98.5 1.2E-05 4E-10 75.9 19.6 177 140-344 21-233 (297)
36 3eie_A Vacuolar protein sortin 98.4 1.3E-06 4.5E-11 83.6 12.5 177 140-344 18-228 (322)
37 3vfd_A Spastin; ATPase, microt 98.4 7.6E-06 2.6E-10 80.4 18.3 177 140-344 115-326 (389)
38 3u61_B DNA polymerase accessor 98.4 2.2E-06 7.5E-11 82.1 13.8 170 140-340 26-212 (324)
39 1l8q_A Chromosomal replication 98.4 2.6E-06 8.8E-11 81.6 12.7 175 141-340 12-204 (324)
40 1a5t_A Delta prime, HOLB; zinc 98.4 7.6E-06 2.6E-10 78.7 15.8 169 149-343 9-204 (334)
41 2qz4_A Paraplegin; AAA+, SPG7, 98.3 8.6E-06 2.9E-10 75.2 14.7 178 140-343 6-221 (262)
42 2qp9_X Vacuolar protein sortin 98.3 4.1E-06 1.4E-10 81.2 12.7 177 140-344 51-261 (355)
43 1sxj_C Activator 1 40 kDa subu 98.3 5.4E-06 1.9E-10 79.9 13.5 177 141-340 26-208 (340)
44 2zan_A Vacuolar protein sortin 98.3 1.2E-05 4E-10 80.4 15.8 179 140-344 134-345 (444)
45 2p65_A Hypothetical protein PF 98.3 1E-06 3.6E-11 76.6 6.7 46 140-187 22-67 (187)
46 3n70_A Transport activator; si 98.3 4.6E-07 1.6E-11 75.8 3.7 44 141-186 2-47 (145)
47 3pxg_A Negative regulator of g 98.2 9.2E-06 3.2E-10 81.8 13.2 149 140-313 180-340 (468)
48 1in4_A RUVB, holliday junction 98.2 4.8E-05 1.6E-09 73.0 16.3 50 292-344 174-223 (334)
49 1qvr_A CLPB protein; coiled co 98.1 6.4E-06 2.2E-10 89.4 10.0 177 140-334 170-369 (854)
50 2gno_A DNA polymerase III, gam 98.1 1.3E-05 4.6E-10 75.6 10.0 145 149-311 4-152 (305)
51 3pxi_A Negative regulator of g 98.0 4.6E-05 1.6E-09 81.6 13.2 151 140-313 180-340 (758)
52 1r6b_X CLPA protein; AAA+, N-t 98.0 0.00013 4.5E-09 78.2 16.5 154 140-311 186-362 (758)
53 4b4t_J 26S protease regulatory 98.0 0.00035 1.2E-08 67.7 17.7 150 162-337 181-354 (405)
54 3cf0_A Transitional endoplasmi 98.0 5.5E-05 1.9E-09 71.4 11.9 171 140-338 15-222 (301)
55 4b4t_L 26S protease subunit RP 97.9 0.00024 8.4E-09 69.9 15.8 150 162-337 214-387 (437)
56 1ofh_A ATP-dependent HSL prote 97.9 6.4E-05 2.2E-09 71.1 11.0 45 141-187 16-74 (310)
57 3ec2_A DNA replication protein 97.8 7E-06 2.4E-10 71.2 3.3 114 149-281 21-142 (180)
58 2bjv_A PSP operon transcriptio 97.8 5.2E-05 1.8E-09 70.2 9.2 44 141-186 7-52 (265)
59 1ojl_A Transcriptional regulat 97.8 3.9E-05 1.3E-09 72.6 8.2 44 141-186 3-48 (304)
60 3hu3_A Transitional endoplasmi 97.8 0.00026 9E-09 71.2 14.4 175 141-343 205-414 (489)
61 4b4t_I 26S protease regulatory 97.8 0.00025 8.6E-09 69.0 13.6 148 163-336 216-387 (437)
62 4b4t_K 26S protease regulatory 97.8 0.00036 1.2E-08 68.6 14.7 149 162-336 205-378 (428)
63 3co5_A Putative two-component 97.8 6.1E-06 2.1E-10 68.7 1.5 44 141-186 5-50 (143)
64 4fcw_A Chaperone protein CLPB; 97.7 3.5E-05 1.2E-09 73.1 6.5 105 141-256 18-131 (311)
65 4b4t_M 26S protease regulatory 97.7 0.0001 3.4E-09 72.6 9.7 149 162-336 214-386 (434)
66 2ce7_A Cell division protein F 97.7 0.00027 9.2E-09 70.6 12.8 172 140-337 16-221 (476)
67 4b4t_H 26S protease regulatory 97.7 0.00063 2.2E-08 66.9 14.9 149 162-336 242-414 (467)
68 1lv7_A FTSH; alpha/beta domain 97.7 0.00032 1.1E-08 64.4 12.2 174 140-341 12-222 (257)
69 2w58_A DNAI, primosome compone 97.7 5.7E-05 1.9E-09 66.7 6.8 95 141-255 26-126 (202)
70 2r62_A Cell division protease 97.7 4.2E-05 1.4E-09 70.9 5.9 47 140-186 11-67 (268)
71 2c9o_A RUVB-like 1; hexameric 97.6 0.00049 1.7E-08 68.9 13.0 46 140-187 37-87 (456)
72 3pxi_A Negative regulator of g 97.5 5.2E-05 1.8E-09 81.2 3.8 144 141-310 492-674 (758)
73 3cf2_A TER ATPase, transitiona 97.4 0.00066 2.2E-08 71.9 10.8 149 163-337 238-407 (806)
74 3m6a_A ATP-dependent protease 97.3 0.0023 7.8E-08 65.4 13.3 45 141-187 82-132 (543)
75 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00027 9.2E-09 66.2 5.0 70 163-256 123-194 (331)
76 2z43_A DNA repair and recombin 97.2 0.0016 5.4E-08 62.0 10.4 90 163-254 107-213 (324)
77 2cvh_A DNA repair and recombin 97.2 0.0021 7.1E-08 57.1 10.5 85 163-255 20-116 (220)
78 3hr8_A Protein RECA; alpha and 97.2 0.0012 3.9E-08 63.4 8.9 86 163-256 61-151 (356)
79 1v5w_A DMC1, meiotic recombina 97.2 0.0023 8E-08 61.3 11.2 92 162-255 121-230 (343)
80 1n0w_A DNA repair protein RAD5 97.2 0.0016 5.6E-08 58.9 9.7 91 163-255 24-130 (243)
81 2dhr_A FTSH; AAA+ protein, hex 97.1 0.0046 1.6E-07 62.1 13.4 169 140-337 31-236 (499)
82 3io5_A Recombination and repai 97.1 0.0017 5.8E-08 60.6 9.0 87 164-256 29-123 (333)
83 2kjq_A DNAA-related protein; s 97.1 0.00056 1.9E-08 57.0 5.2 40 162-204 35-74 (149)
84 1r6b_X CLPA protein; AAA+, N-t 97.0 0.00091 3.1E-08 71.6 7.5 45 141-187 459-512 (758)
85 1ypw_A Transitional endoplasmi 97.0 0.0022 7.5E-08 68.8 10.4 150 140-313 204-387 (806)
86 2i1q_A DNA repair and recombin 97.0 0.0016 5.6E-08 61.9 8.4 90 163-254 98-214 (322)
87 1xp8_A RECA protein, recombina 97.0 0.0018 6.2E-08 62.5 8.7 85 163-255 74-163 (366)
88 2zr9_A Protein RECA, recombina 97.0 0.002 6.7E-08 61.9 8.5 85 163-255 61-150 (349)
89 1u94_A RECA protein, recombina 96.8 0.002 7E-08 61.9 7.5 85 163-255 63-152 (356)
90 3t15_A Ribulose bisphosphate c 96.8 0.00067 2.3E-08 63.6 4.0 25 163-187 36-60 (293)
91 2x8a_A Nuclear valosin-contain 96.8 0.0027 9.2E-08 58.8 8.0 125 166-312 47-192 (274)
92 2qgz_A Helicase loader, putati 96.8 0.0012 4.1E-08 62.3 5.5 50 150-202 136-189 (308)
93 1qvr_A CLPB protein; coiled co 96.8 0.00099 3.4E-08 72.2 5.4 45 141-187 559-612 (854)
94 1jr3_D DNA polymerase III, del 96.8 0.0071 2.4E-07 57.9 10.7 155 161-342 16-183 (343)
95 3c8u_A Fructokinase; YP_612366 96.7 0.002 6.9E-08 56.9 5.6 38 150-187 7-46 (208)
96 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0037 1.3E-07 56.0 7.4 39 163-204 23-61 (235)
97 4a74_A DNA repair and recombin 96.6 0.0081 2.8E-07 53.6 9.5 92 163-255 25-136 (231)
98 3lda_A DNA repair protein RAD5 96.6 0.0071 2.4E-07 59.0 9.7 90 163-254 178-283 (400)
99 3bh0_A DNAB-like replicative h 96.6 0.01 3.5E-07 56.1 10.5 62 150-218 57-118 (315)
100 3dm5_A SRP54, signal recogniti 96.6 0.012 4.2E-07 57.8 11.2 25 163-187 100-124 (443)
101 2px0_A Flagellar biosynthesis 96.4 0.0097 3.3E-07 55.6 9.0 87 162-253 104-191 (296)
102 1vma_A Cell division protein F 96.3 0.011 3.8E-07 55.4 8.5 88 163-254 104-196 (306)
103 3ice_A Transcription terminati 96.3 0.0042 1.4E-07 59.5 5.5 92 161-254 172-271 (422)
104 2dr3_A UPF0273 protein PH0284; 96.3 0.011 3.8E-07 53.3 8.3 39 163-204 23-61 (247)
105 1qhx_A CPT, protein (chloramph 96.3 0.0024 8.2E-08 54.7 3.5 23 164-186 4-26 (178)
106 3kb2_A SPBC2 prophage-derived 96.3 0.0025 8.6E-08 54.2 3.5 24 164-187 2-25 (173)
107 1rz3_A Hypothetical protein rb 96.2 0.0042 1.4E-07 54.5 5.0 39 149-187 5-46 (201)
108 1ex7_A Guanylate kinase; subst 96.2 0.0025 8.5E-08 55.1 3.3 23 164-186 2-24 (186)
109 3kl4_A SRP54, signal recogniti 96.2 0.019 6.6E-07 56.4 9.9 26 163-188 97-122 (433)
110 2r6a_A DNAB helicase, replicat 96.2 0.3 1E-05 48.5 18.8 61 150-216 192-252 (454)
111 3lw7_A Adenylate kinase relate 96.2 0.0026 8.9E-08 54.1 3.2 22 164-186 2-23 (179)
112 4a1f_A DNAB helicase, replicat 96.2 0.021 7.1E-07 54.2 9.7 61 150-217 35-95 (338)
113 1kgd_A CASK, peripheral plasma 96.1 0.0033 1.1E-07 54.1 3.4 24 163-186 5-28 (180)
114 1zp6_A Hypothetical protein AT 96.1 0.0037 1.3E-07 54.2 3.7 24 163-186 9-32 (191)
115 3uie_A Adenylyl-sulfate kinase 96.1 0.004 1.4E-07 54.6 4.0 29 159-187 21-49 (200)
116 1pzn_A RAD51, DNA repair and r 96.1 0.019 6.6E-07 55.0 9.1 92 162-255 130-242 (349)
117 1ly1_A Polynucleotide kinase; 96.1 0.0036 1.2E-07 53.6 3.5 22 164-185 3-24 (181)
118 3vaa_A Shikimate kinase, SK; s 96.0 0.0037 1.3E-07 54.7 3.5 25 163-187 25-49 (199)
119 1kag_A SKI, shikimate kinase I 96.0 0.0033 1.1E-07 53.5 3.1 23 164-186 5-27 (173)
120 3cmu_A Protein RECA, recombina 96.0 0.013 4.3E-07 67.8 8.6 85 162-254 1426-1515(2050)
121 3trf_A Shikimate kinase, SK; a 96.0 0.004 1.4E-07 53.7 3.6 25 163-187 5-29 (185)
122 4eun_A Thermoresistant glucoki 96.0 0.0045 1.5E-07 54.3 3.7 26 161-186 27-52 (200)
123 1sky_E F1-ATPase, F1-ATP synth 95.9 0.014 4.8E-07 57.6 7.6 89 164-254 152-255 (473)
124 1g8p_A Magnesium-chelatase 38 95.9 0.0038 1.3E-07 59.9 3.4 46 140-187 24-69 (350)
125 3tau_A Guanylate kinase, GMP k 95.9 0.0053 1.8E-07 54.2 4.0 26 161-186 6-31 (208)
126 1nks_A Adenylate kinase; therm 95.9 0.0047 1.6E-07 53.5 3.5 24 164-187 2-25 (194)
127 3t61_A Gluconokinase; PSI-biol 95.9 0.004 1.4E-07 54.6 3.1 25 163-187 18-42 (202)
128 2r44_A Uncharacterized protein 95.9 0.0046 1.6E-07 58.9 3.6 42 141-186 28-69 (331)
129 2xxa_A Signal recognition part 95.8 0.054 1.8E-06 53.4 11.2 90 162-253 99-192 (433)
130 1ixz_A ATP-dependent metallopr 95.8 0.011 3.7E-07 53.9 5.8 146 166-337 52-221 (254)
131 3tr0_A Guanylate kinase, GMP k 95.8 0.0051 1.8E-07 53.9 3.5 24 163-186 7-30 (205)
132 1kht_A Adenylate kinase; phosp 95.8 0.0054 1.8E-07 53.1 3.5 24 164-187 4-27 (192)
133 2ck3_D ATP synthase subunit be 95.8 0.044 1.5E-06 54.0 10.2 91 162-254 152-263 (482)
134 1j8m_F SRP54, signal recogniti 95.8 0.029 9.9E-07 52.4 8.6 88 163-253 98-189 (297)
135 2rhm_A Putative kinase; P-loop 95.8 0.0063 2.1E-07 52.7 3.9 25 163-187 5-29 (193)
136 1knq_A Gluconate kinase; ALFA/ 95.8 0.0061 2.1E-07 52.0 3.7 24 163-186 8-31 (175)
137 3iij_A Coilin-interacting nucl 95.8 0.0051 1.7E-07 52.8 3.1 24 163-186 11-34 (180)
138 2ze6_A Isopentenyl transferase 95.7 0.0058 2E-07 55.8 3.6 24 164-187 2-25 (253)
139 2qor_A Guanylate kinase; phosp 95.7 0.0054 1.8E-07 53.9 3.3 24 163-186 12-35 (204)
140 3hws_A ATP-dependent CLP prote 95.7 0.0096 3.3E-07 57.5 5.4 43 142-186 17-74 (363)
141 3a00_A Guanylate kinase, GMP k 95.7 0.005 1.7E-07 53.3 3.0 23 164-186 2-24 (186)
142 2yvu_A Probable adenylyl-sulfa 95.7 0.0073 2.5E-07 52.1 4.1 26 162-187 12-37 (186)
143 2ffh_A Protein (FFH); SRP54, s 95.7 0.033 1.1E-06 54.6 9.1 25 163-187 98-122 (425)
144 1via_A Shikimate kinase; struc 95.7 0.0054 1.8E-07 52.4 3.1 24 164-187 5-28 (175)
145 4gp7_A Metallophosphoesterase; 95.7 0.0053 1.8E-07 52.3 3.0 22 163-184 9-30 (171)
146 3nbx_X ATPase RAVA; AAA+ ATPas 95.7 0.0066 2.3E-07 61.0 4.1 42 141-186 23-64 (500)
147 2q6t_A DNAB replication FORK h 95.7 0.036 1.2E-06 55.1 9.4 63 150-218 189-251 (444)
148 2hf9_A Probable hydrogenase ni 95.7 0.0094 3.2E-07 53.1 4.7 36 151-186 26-61 (226)
149 2bdt_A BH3686; alpha-beta prot 95.7 0.0067 2.3E-07 52.5 3.6 23 164-186 3-25 (189)
150 2b8t_A Thymidine kinase; deoxy 95.6 0.0028 9.7E-08 56.5 1.1 111 162-281 11-125 (223)
151 2iyv_A Shikimate kinase, SK; t 95.6 0.0056 1.9E-07 52.7 3.0 23 164-186 3-25 (184)
152 3asz_A Uridine kinase; cytidin 95.6 0.007 2.4E-07 53.4 3.7 25 162-186 5-29 (211)
153 2j41_A Guanylate kinase; GMP, 95.6 0.0075 2.6E-07 52.9 3.8 24 163-186 6-29 (207)
154 2wsm_A Hydrogenase expression/ 95.6 0.008 2.7E-07 53.4 4.0 37 150-186 17-53 (221)
155 1ye8_A Protein THEP1, hypothet 95.6 0.0071 2.4E-07 51.9 3.4 23 165-187 2-24 (178)
156 1zuh_A Shikimate kinase; alpha 95.6 0.0074 2.5E-07 51.1 3.5 25 163-187 7-31 (168)
157 1q57_A DNA primase/helicase; d 95.6 0.057 1.9E-06 54.6 10.7 51 163-217 242-292 (503)
158 1y63_A LMAJ004144AAA protein; 95.6 0.0089 3E-07 51.5 4.1 24 163-186 10-33 (184)
159 1fx0_B ATP synthase beta chain 95.6 0.048 1.6E-06 54.0 9.7 91 162-254 164-276 (498)
160 2jaq_A Deoxyguanosine kinase; 95.6 0.0074 2.5E-07 52.8 3.5 23 165-187 2-24 (205)
161 3ney_A 55 kDa erythrocyte memb 95.6 0.0081 2.8E-07 52.3 3.7 25 162-186 18-42 (197)
162 2c95_A Adenylate kinase 1; tra 95.6 0.0077 2.6E-07 52.3 3.6 24 163-186 9-32 (196)
163 1lvg_A Guanylate kinase, GMP k 95.6 0.0063 2.1E-07 53.3 3.0 24 163-186 4-27 (198)
164 3e70_C DPA, signal recognition 95.6 0.052 1.8E-06 51.4 9.6 58 161-221 127-185 (328)
165 1ukz_A Uridylate kinase; trans 95.6 0.0093 3.2E-07 52.2 4.2 25 162-186 14-38 (203)
166 1uf9_A TT1252 protein; P-loop, 95.5 0.0083 2.9E-07 52.4 3.8 26 161-186 6-31 (203)
167 1tev_A UMP-CMP kinase; ploop, 95.5 0.0081 2.8E-07 52.1 3.7 24 163-186 3-26 (196)
168 1g5t_A COB(I)alamin adenosyltr 95.5 0.016 5.3E-07 50.2 5.3 118 163-283 28-164 (196)
169 1e6c_A Shikimate kinase; phosp 95.5 0.0069 2.4E-07 51.4 3.1 24 164-187 3-26 (173)
170 1um8_A ATP-dependent CLP prote 95.5 0.013 4.4E-07 56.9 5.4 24 163-186 72-95 (376)
171 1cke_A CK, MSSA, protein (cyti 95.5 0.0078 2.7E-07 53.7 3.5 23 164-186 6-28 (227)
172 3umf_A Adenylate kinase; rossm 95.5 0.0088 3E-07 53.0 3.8 26 162-187 28-53 (217)
173 3cm0_A Adenylate kinase; ATP-b 95.5 0.0086 2.9E-07 51.6 3.6 24 163-186 4-27 (186)
174 2bwj_A Adenylate kinase 5; pho 95.5 0.008 2.8E-07 52.3 3.4 25 163-187 12-36 (199)
175 1odf_A YGR205W, hypothetical 3 95.5 0.014 4.9E-07 54.3 5.3 27 161-187 29-55 (290)
176 1gvn_B Zeta; postsegregational 95.5 0.014 4.6E-07 54.4 5.1 25 162-186 32-56 (287)
177 1ls1_A Signal recognition part 95.5 0.032 1.1E-06 52.1 7.7 87 163-253 98-189 (295)
178 1iy2_A ATP-dependent metallopr 95.4 0.017 5.9E-07 53.4 5.8 21 166-186 76-96 (278)
179 2if2_A Dephospho-COA kinase; a 95.4 0.0082 2.8E-07 52.6 3.3 22 164-185 2-23 (204)
180 2plr_A DTMP kinase, probable t 95.4 0.0091 3.1E-07 52.5 3.6 24 164-187 5-28 (213)
181 2qt1_A Nicotinamide riboside k 95.4 0.0097 3.3E-07 52.3 3.8 24 163-186 21-44 (207)
182 1qf9_A UMP/CMP kinase, protein 95.4 0.0093 3.2E-07 51.6 3.6 24 163-186 6-29 (194)
183 1jjv_A Dephospho-COA kinase; P 95.4 0.0086 2.9E-07 52.6 3.4 22 164-185 3-24 (206)
184 1xjc_A MOBB protein homolog; s 95.4 0.01 3.5E-07 50.2 3.6 26 162-187 3-28 (169)
185 2j37_W Signal recognition part 95.4 0.11 3.9E-06 52.0 11.8 27 162-188 100-126 (504)
186 3a4m_A L-seryl-tRNA(SEC) kinas 95.3 0.01 3.6E-07 54.3 3.8 25 163-187 4-28 (260)
187 3cmu_A Protein RECA, recombina 95.3 0.034 1.2E-06 64.3 8.6 86 162-255 382-472 (2050)
188 1znw_A Guanylate kinase, GMP k 95.3 0.0095 3.3E-07 52.5 3.4 24 163-186 20-43 (207)
189 2pt5_A Shikimate kinase, SK; a 95.3 0.01 3.6E-07 50.1 3.5 22 165-186 2-23 (168)
190 2cdn_A Adenylate kinase; phosp 95.3 0.01 3.5E-07 51.9 3.5 24 163-186 20-43 (201)
191 1aky_A Adenylate kinase; ATP:A 95.3 0.011 3.8E-07 52.5 3.7 25 163-187 4-28 (220)
192 2pbr_A DTMP kinase, thymidylat 95.3 0.01 3.6E-07 51.3 3.5 23 165-187 2-24 (195)
193 2vli_A Antibiotic resistance p 95.3 0.0069 2.4E-07 52.0 2.3 24 163-186 5-28 (183)
194 2ga8_A Hypothetical 39.9 kDa p 95.3 0.018 6.2E-07 54.7 5.3 38 150-187 7-48 (359)
195 2bbw_A Adenylate kinase 4, AK4 95.2 0.01 3.5E-07 53.8 3.4 24 163-186 27-50 (246)
196 1z6g_A Guanylate kinase; struc 95.2 0.0093 3.2E-07 53.0 3.0 24 163-186 23-46 (218)
197 2wwf_A Thymidilate kinase, put 95.2 0.012 4E-07 51.9 3.7 25 163-187 10-34 (212)
198 2z0h_A DTMP kinase, thymidylat 95.2 0.011 3.9E-07 51.2 3.5 23 165-187 2-24 (197)
199 2jeo_A Uridine-cytidine kinase 95.2 0.013 4.3E-07 53.2 3.9 26 162-187 24-49 (245)
200 1tue_A Replication protein E1; 95.2 0.014 4.7E-07 50.8 3.9 37 151-187 45-82 (212)
201 1nn5_A Similar to deoxythymidy 95.2 0.013 4.4E-07 51.7 3.8 25 163-187 9-33 (215)
202 2grj_A Dephospho-COA kinase; T 95.2 0.012 4.2E-07 51.1 3.5 25 162-186 11-35 (192)
203 3fb4_A Adenylate kinase; psych 95.2 0.012 4E-07 52.1 3.5 22 165-186 2-23 (216)
204 1s96_A Guanylate kinase, GMP k 95.1 0.013 4.4E-07 52.2 3.7 24 163-186 16-39 (219)
205 3aez_A Pantothenate kinase; tr 95.1 0.013 4.5E-07 55.2 3.9 27 161-187 88-114 (312)
206 1htw_A HI0065; nucleotide-bind 95.1 0.013 4.6E-07 49.0 3.6 27 161-187 31-57 (158)
207 3bgw_A DNAB-like replicative h 95.1 0.049 1.7E-06 54.0 8.0 51 149-204 185-235 (444)
208 1zd8_A GTP:AMP phosphotransfer 95.1 0.013 4.3E-07 52.5 3.4 24 163-186 7-30 (227)
209 3dl0_A Adenylate kinase; phosp 95.1 0.013 4.5E-07 51.8 3.5 22 165-186 2-23 (216)
210 4e22_A Cytidylate kinase; P-lo 95.1 0.013 4.4E-07 53.4 3.5 25 162-186 26-50 (252)
211 2zts_A Putative uncharacterize 95.0 0.039 1.3E-06 49.8 6.7 49 163-215 30-78 (251)
212 2v54_A DTMP kinase, thymidylat 95.0 0.014 4.6E-07 51.1 3.5 24 163-186 4-27 (204)
213 1rj9_A FTSY, signal recognitio 95.0 0.015 5.1E-07 54.5 3.9 26 162-187 101-126 (304)
214 1gtv_A TMK, thymidylate kinase 95.0 0.0073 2.5E-07 53.3 1.6 23 165-187 2-24 (214)
215 3cmw_A Protein RECA, recombina 95.0 0.037 1.3E-06 63.2 7.5 87 162-256 382-473 (1706)
216 2p5t_B PEZT; postsegregational 95.0 0.018 6.2E-07 52.4 4.3 24 163-186 32-55 (253)
217 3fwy_A Light-independent proto 95.0 0.014 5E-07 54.9 3.7 41 161-204 46-86 (314)
218 1uj2_A Uridine-cytidine kinase 95.0 0.015 5.3E-07 52.9 3.8 26 161-186 20-45 (252)
219 1zak_A Adenylate kinase; ATP:A 94.9 0.014 4.9E-07 51.9 3.4 25 163-187 5-29 (222)
220 2pez_A Bifunctional 3'-phospho 94.9 0.018 6.1E-07 49.2 3.8 25 163-187 5-29 (179)
221 2ehv_A Hypothetical protein PH 94.9 0.015 5.1E-07 52.6 3.4 23 163-185 30-52 (251)
222 3tlx_A Adenylate kinase 2; str 94.9 0.018 6.1E-07 52.2 3.8 25 162-186 28-52 (243)
223 3sr0_A Adenylate kinase; phosp 94.8 0.017 5.8E-07 50.8 3.5 22 165-186 2-23 (206)
224 2i3b_A HCR-ntpase, human cance 94.8 0.015 5.1E-07 50.4 3.0 24 164-187 2-25 (189)
225 3lnc_A Guanylate kinase, GMP k 94.8 0.011 3.7E-07 53.1 2.1 24 163-186 27-51 (231)
226 1m7g_A Adenylylsulfate kinase; 94.8 0.019 6.4E-07 50.7 3.7 27 161-187 23-49 (211)
227 1g41_A Heat shock protein HSLU 94.8 0.019 6.5E-07 56.5 4.0 24 163-186 50-73 (444)
228 3l0o_A Transcription terminati 94.8 0.0051 1.7E-07 58.9 -0.1 51 153-204 164-215 (427)
229 1np6_A Molybdopterin-guanine d 94.7 0.02 6.7E-07 48.9 3.6 25 163-187 6-30 (174)
230 3tqc_A Pantothenate kinase; bi 94.7 0.021 7E-07 53.9 4.1 25 163-187 92-116 (321)
231 2f1r_A Molybdopterin-guanine d 94.7 0.011 3.7E-07 50.4 1.9 24 164-187 3-26 (171)
232 2onk_A Molybdate/tungstate ABC 94.7 0.019 6.6E-07 51.8 3.6 23 164-186 25-47 (240)
233 4tmk_A Protein (thymidylate ki 94.7 0.045 1.5E-06 48.3 5.9 52 164-217 4-55 (213)
234 3r20_A Cytidylate kinase; stru 94.7 0.019 6.6E-07 51.4 3.5 24 163-186 9-32 (233)
235 3tif_A Uncharacterized ABC tra 94.7 0.018 6.2E-07 51.8 3.4 25 162-186 30-54 (235)
236 3ake_A Cytidylate kinase; CMP 94.6 0.02 6.8E-07 50.1 3.5 23 164-186 3-25 (208)
237 3d3q_A TRNA delta(2)-isopenten 94.6 0.02 6.8E-07 54.2 3.7 23 164-186 8-30 (340)
238 1vht_A Dephospho-COA kinase; s 94.6 0.019 6.6E-07 50.8 3.4 23 163-185 4-26 (218)
239 4eaq_A DTMP kinase, thymidylat 94.6 0.036 1.2E-06 49.6 5.2 26 162-187 25-50 (229)
240 2pcj_A ABC transporter, lipopr 94.6 0.017 5.8E-07 51.6 3.0 24 163-186 30-53 (224)
241 3lv8_A DTMP kinase, thymidylat 94.6 0.045 1.5E-06 49.1 5.7 52 163-216 27-78 (236)
242 2xb4_A Adenylate kinase; ATP-b 94.6 0.021 7.1E-07 50.9 3.5 22 165-186 2-23 (223)
243 1a7j_A Phosphoribulokinase; tr 94.6 0.011 3.9E-07 55.0 1.8 26 162-187 4-29 (290)
244 3cmw_A Protein RECA, recombina 94.6 0.054 1.9E-06 61.9 7.5 84 163-254 1431-1519(1706)
245 3exa_A TRNA delta(2)-isopenten 94.5 0.022 7.4E-07 53.2 3.6 24 163-186 3-26 (322)
246 1sq5_A Pantothenate kinase; P- 94.5 0.023 7.7E-07 53.5 3.8 25 162-186 79-103 (308)
247 1e4v_A Adenylate kinase; trans 94.5 0.021 7.3E-07 50.4 3.4 22 165-186 2-23 (214)
248 3nwj_A ATSK2; P loop, shikimat 94.5 0.018 6.3E-07 52.2 3.0 24 163-186 48-71 (250)
249 3crm_A TRNA delta(2)-isopenten 94.5 0.022 7.5E-07 53.5 3.6 23 164-186 6-28 (323)
250 2f6r_A COA synthase, bifunctio 94.5 0.024 8.3E-07 52.5 3.9 24 162-185 74-97 (281)
251 3b9q_A Chloroplast SRP recepto 94.5 0.024 8.1E-07 53.1 3.8 25 163-187 100-124 (302)
252 3k1j_A LON protease, ATP-depen 94.5 0.055 1.9E-06 56.0 6.9 43 140-186 41-83 (604)
253 3be4_A Adenylate kinase; malar 94.5 0.022 7.5E-07 50.5 3.4 24 164-187 6-29 (217)
254 3a8t_A Adenylate isopentenyltr 94.4 0.023 7.7E-07 53.7 3.5 25 163-187 40-64 (339)
255 3cf2_A TER ATPase, transitiona 94.4 0.013 4.6E-07 62.0 2.1 71 163-255 511-581 (806)
256 2cbz_A Multidrug resistance-as 94.4 0.023 7.7E-07 51.2 3.4 24 163-186 31-54 (237)
257 3p32_A Probable GTPase RV1496/ 94.4 0.046 1.6E-06 52.5 5.8 37 151-187 65-103 (355)
258 3b85_A Phosphate starvation-in 94.4 0.017 5.8E-07 50.9 2.5 24 163-186 22-45 (208)
259 3vr4_D V-type sodium ATPase su 94.4 0.05 1.7E-06 53.3 5.9 91 163-254 151-258 (465)
260 2qe7_A ATP synthase subunit al 94.4 0.056 1.9E-06 53.5 6.3 88 162-254 161-264 (502)
261 2r9v_A ATP synthase subunit al 94.3 0.061 2.1E-06 53.4 6.5 87 163-254 175-277 (515)
262 1b0u_A Histidine permease; ABC 94.3 0.023 8E-07 52.0 3.4 25 162-186 31-55 (262)
263 2eyu_A Twitching motility prot 94.3 0.036 1.2E-06 50.7 4.6 109 161-283 23-134 (261)
264 1cr0_A DNA primase/helicase; R 94.3 0.052 1.8E-06 50.6 5.8 40 162-203 34-73 (296)
265 1ak2_A Adenylate kinase isoenz 94.3 0.026 8.9E-07 50.6 3.5 25 163-187 16-40 (233)
266 3foz_A TRNA delta(2)-isopenten 94.3 0.027 9.3E-07 52.4 3.6 24 163-186 10-33 (316)
267 3gfo_A Cobalt import ATP-bindi 94.3 0.022 7.5E-07 52.5 3.0 24 163-186 34-57 (275)
268 2qmh_A HPR kinase/phosphorylas 94.2 0.026 8.8E-07 48.9 3.2 24 163-186 34-57 (205)
269 2d2e_A SUFC protein; ABC-ATPas 94.2 0.026 8.8E-07 51.3 3.4 24 163-186 29-52 (250)
270 1sgw_A Putative ABC transporte 94.2 0.02 7E-07 50.6 2.6 24 163-186 35-58 (214)
271 1ji0_A ABC transporter; ATP bi 94.2 0.023 8E-07 51.2 3.1 24 163-186 32-55 (240)
272 1oix_A RAS-related protein RAB 94.2 0.027 9.1E-07 48.7 3.3 24 163-186 29-52 (191)
273 4g1u_C Hemin import ATP-bindin 94.2 0.023 8E-07 52.1 3.0 24 163-186 37-60 (266)
274 2olj_A Amino acid ABC transpor 94.2 0.026 9E-07 51.6 3.4 25 162-186 49-73 (263)
275 1g6h_A High-affinity branched- 94.2 0.024 8.2E-07 51.8 3.1 24 163-186 33-56 (257)
276 2pze_A Cystic fibrosis transme 94.2 0.024 8.3E-07 50.7 3.0 24 163-186 34-57 (229)
277 1mv5_A LMRA, multidrug resista 94.2 0.028 9.6E-07 50.8 3.5 24 163-186 28-51 (243)
278 4edh_A DTMP kinase, thymidylat 94.1 0.071 2.4E-06 47.0 6.0 25 163-187 6-30 (213)
279 1ltq_A Polynucleotide kinase; 94.1 0.028 9.6E-07 52.5 3.5 23 164-186 3-25 (301)
280 2ff7_A Alpha-hemolysin translo 94.1 0.025 8.6E-07 51.3 3.1 24 163-186 35-58 (247)
281 2zu0_C Probable ATP-dependent 94.1 0.031 1.1E-06 51.3 3.7 25 162-186 45-69 (267)
282 3upu_A ATP-dependent DNA helic 94.1 0.1 3.4E-06 52.1 7.6 39 149-188 32-70 (459)
283 1vpl_A ABC transporter, ATP-bi 94.1 0.029 9.9E-07 51.1 3.4 25 162-186 40-64 (256)
284 3zvl_A Bifunctional polynucleo 94.1 0.03 1E-06 55.1 3.7 26 161-186 256-281 (416)
285 2og2_A Putative signal recogni 94.1 0.033 1.1E-06 53.4 3.9 25 163-187 157-181 (359)
286 2v9p_A Replication protein E1; 94.0 0.032 1.1E-06 52.1 3.7 26 161-186 124-149 (305)
287 2ghi_A Transport protein; mult 94.0 0.031 1E-06 51.1 3.4 24 163-186 46-69 (260)
288 2ixe_A Antigen peptide transpo 94.0 0.031 1E-06 51.5 3.4 25 162-186 44-68 (271)
289 2zej_A Dardarin, leucine-rich 94.0 0.025 8.6E-07 48.5 2.7 22 165-186 4-25 (184)
290 2f9l_A RAB11B, member RAS onco 94.0 0.03 1E-06 48.6 3.2 23 164-186 6-28 (199)
291 2wji_A Ferrous iron transport 94.0 0.032 1.1E-06 46.8 3.2 23 164-186 4-26 (165)
292 1u0j_A DNA replication protein 94.0 0.078 2.7E-06 48.2 6.0 38 149-186 88-127 (267)
293 2dyk_A GTP-binding protein; GT 94.0 0.035 1.2E-06 46.0 3.5 23 164-186 2-24 (161)
294 2qi9_C Vitamin B12 import ATP- 93.9 0.028 9.7E-07 50.9 3.0 24 163-186 26-49 (249)
295 1nlf_A Regulatory protein REPA 93.9 0.03 1E-06 51.7 3.2 24 163-186 30-53 (279)
296 2yz2_A Putative ABC transporte 93.9 0.033 1.1E-06 51.1 3.4 24 163-186 33-56 (266)
297 3ld9_A DTMP kinase, thymidylat 93.9 0.065 2.2E-06 47.6 5.1 58 159-217 17-74 (223)
298 2nq2_C Hypothetical ABC transp 93.8 0.03 1E-06 50.9 3.0 24 163-186 31-54 (253)
299 2ihy_A ABC transporter, ATP-bi 93.8 0.031 1.1E-06 51.7 3.0 24 163-186 47-70 (279)
300 1zu4_A FTSY; GTPase, signal re 93.7 0.043 1.5E-06 51.8 3.9 26 163-188 105-130 (320)
301 2yhs_A FTSY, cell division pro 93.6 0.044 1.5E-06 54.5 3.9 26 162-187 292-317 (503)
302 3gqb_B V-type ATP synthase bet 93.6 0.083 2.9E-06 51.7 5.8 91 163-254 147-261 (464)
303 2ce2_X GTPase HRAS; signaling 93.6 0.037 1.3E-06 45.9 3.0 22 165-186 5-26 (166)
304 1zj6_A ADP-ribosylation factor 93.6 0.076 2.6E-06 45.4 5.1 35 151-186 5-39 (187)
305 1svm_A Large T antigen; AAA+ f 93.6 0.044 1.5E-06 52.9 3.8 26 161-186 167-192 (377)
306 2vp4_A Deoxynucleoside kinase; 93.6 0.033 1.1E-06 49.8 2.8 25 162-186 19-43 (230)
307 1yrb_A ATP(GTP)binding protein 93.5 0.046 1.6E-06 49.8 3.8 25 163-187 14-38 (262)
308 1fzq_A ADP-ribosylation factor 93.5 0.048 1.6E-06 46.5 3.6 26 161-186 14-39 (181)
309 1fx0_A ATP synthase alpha chai 93.5 0.06 2.1E-06 53.4 4.7 87 163-254 163-265 (507)
310 1z2a_A RAS-related protein RAB 93.5 0.04 1.4E-06 45.9 3.1 23 164-186 6-28 (168)
311 3mfy_A V-type ATP synthase alp 93.5 0.15 5.2E-06 51.0 7.4 49 162-215 226-275 (588)
312 1q3t_A Cytidylate kinase; nucl 93.5 0.05 1.7E-06 48.8 3.8 25 162-186 15-39 (236)
313 3eph_A TRNA isopentenyltransfe 93.5 0.043 1.5E-06 53.0 3.5 24 164-187 3-26 (409)
314 2ocp_A DGK, deoxyguanosine kin 93.4 0.05 1.7E-06 49.0 3.7 25 163-187 2-26 (241)
315 3sop_A Neuronal-specific septi 93.4 0.042 1.4E-06 50.5 3.3 22 165-186 4-25 (270)
316 2orw_A Thymidine kinase; TMTK, 93.4 0.048 1.7E-06 46.9 3.5 23 164-186 4-26 (184)
317 2wjg_A FEOB, ferrous iron tran 93.4 0.046 1.6E-06 46.7 3.4 23 164-186 8-30 (188)
318 2pjz_A Hypothetical protein ST 93.4 0.04 1.4E-06 50.4 3.0 24 163-186 30-53 (263)
319 1p9r_A General secretion pathw 93.4 0.14 4.8E-06 50.1 7.1 28 160-187 164-191 (418)
320 3fvq_A Fe(3+) IONS import ATP- 93.3 0.049 1.7E-06 52.0 3.6 24 163-186 30-53 (359)
321 2lkc_A Translation initiation 93.3 0.061 2.1E-06 45.4 3.9 25 162-186 7-31 (178)
322 2yv5_A YJEQ protein; hydrolase 93.3 0.077 2.6E-06 49.6 4.9 32 151-186 156-187 (302)
323 3hjn_A DTMP kinase, thymidylat 93.3 0.099 3.4E-06 45.5 5.3 50 165-217 2-51 (197)
324 3jvv_A Twitching mobility prot 93.3 0.057 1.9E-06 51.7 4.0 113 162-285 122-234 (356)
325 2nzj_A GTP-binding protein REM 93.3 0.044 1.5E-06 46.1 3.0 24 163-186 4-27 (175)
326 4hlc_A DTMP kinase, thymidylat 93.3 0.16 5.4E-06 44.5 6.6 49 164-216 3-51 (205)
327 3iqw_A Tail-anchored protein t 93.3 0.11 3.9E-06 49.2 6.0 49 158-209 11-59 (334)
328 2ged_A SR-beta, signal recogni 93.2 0.046 1.6E-06 47.0 3.1 25 162-186 47-71 (193)
329 1u8z_A RAS-related protein RAL 93.2 0.048 1.6E-06 45.4 3.1 23 164-186 5-27 (168)
330 2ck3_A ATP synthase subunit al 93.2 0.1 3.4E-06 51.9 5.7 92 162-254 161-272 (510)
331 3end_A Light-independent proto 93.2 0.12 4.2E-06 48.2 6.3 42 160-204 38-79 (307)
332 1moz_A ARL1, ADP-ribosylation 93.2 0.062 2.1E-06 45.6 3.8 36 151-186 5-41 (183)
333 3io3_A DEHA2D07832P; chaperone 93.2 0.1 3.4E-06 49.8 5.6 50 158-208 13-62 (348)
334 2bbs_A Cystic fibrosis transme 93.2 0.048 1.7E-06 50.6 3.3 25 162-186 63-87 (290)
335 3f9v_A Minichromosome maintena 93.2 0.031 1.1E-06 57.6 2.1 22 165-186 329-350 (595)
336 3con_A GTPase NRAS; structural 93.2 0.049 1.7E-06 46.7 3.1 23 164-186 22-44 (190)
337 3nh6_A ATP-binding cassette SU 93.1 0.039 1.3E-06 51.6 2.6 25 162-186 79-103 (306)
338 2www_A Methylmalonic aciduria 93.1 0.097 3.3E-06 50.1 5.4 25 162-186 73-97 (349)
339 1r8s_A ADP-ribosylation factor 93.1 0.055 1.9E-06 45.0 3.3 21 166-186 3-23 (164)
340 1z08_A RAS-related protein RAB 93.1 0.05 1.7E-06 45.5 3.1 23 164-186 7-29 (170)
341 1ek0_A Protein (GTP-binding pr 93.1 0.051 1.8E-06 45.3 3.1 22 165-186 5-26 (170)
342 1kao_A RAP2A; GTP-binding prot 93.1 0.053 1.8E-06 45.0 3.2 22 165-186 5-26 (167)
343 2c61_A A-type ATP synthase non 93.1 0.088 3E-06 51.9 5.1 91 163-254 152-259 (469)
344 3kta_A Chromosome segregation 93.1 0.054 1.8E-06 46.3 3.2 23 164-186 27-49 (182)
345 2erx_A GTP-binding protein DI- 93.1 0.053 1.8E-06 45.4 3.1 23 164-186 4-26 (172)
346 2gj8_A MNME, tRNA modification 93.1 0.051 1.8E-06 45.9 3.0 23 164-186 5-27 (172)
347 1z0j_A RAB-22, RAS-related pro 93.1 0.052 1.8E-06 45.3 3.1 23 164-186 7-29 (170)
348 1z47_A CYSA, putative ABC-tran 93.0 0.053 1.8E-06 51.8 3.4 24 163-186 41-64 (355)
349 1c1y_A RAS-related protein RAP 93.0 0.055 1.9E-06 45.0 3.2 22 165-186 5-26 (167)
350 1svi_A GTP-binding protein YSX 93.0 0.061 2.1E-06 46.3 3.5 26 161-186 21-46 (195)
351 1nrj_B SR-beta, signal recogni 93.0 0.064 2.2E-06 47.2 3.7 25 162-186 11-35 (218)
352 1nij_A Hypothetical protein YJ 93.0 0.049 1.7E-06 51.4 3.1 25 162-186 3-27 (318)
353 3ihw_A Centg3; RAS, centaurin, 93.0 0.053 1.8E-06 46.5 3.1 23 164-186 21-43 (184)
354 3q85_A GTP-binding protein REM 93.0 0.052 1.8E-06 45.4 3.0 23 164-186 3-25 (169)
355 1ky3_A GTP-binding protein YPT 93.0 0.053 1.8E-06 45.9 3.1 24 163-186 8-31 (182)
356 3tui_C Methionine import ATP-b 93.0 0.06 2.1E-06 51.5 3.7 25 162-186 53-77 (366)
357 1m7b_A RND3/RHOE small GTP-bin 93.0 0.052 1.8E-06 46.4 3.0 23 164-186 8-30 (184)
358 1f6b_A SAR1; gtpases, N-termin 93.0 0.069 2.4E-06 46.3 3.8 25 162-186 24-48 (198)
359 2yyz_A Sugar ABC transporter, 93.0 0.061 2.1E-06 51.5 3.7 25 162-186 28-52 (359)
360 2hxs_A RAB-26, RAS-related pro 92.9 0.061 2.1E-06 45.4 3.4 23 164-186 7-29 (178)
361 1wms_A RAB-9, RAB9, RAS-relate 92.9 0.056 1.9E-06 45.6 3.1 23 164-186 8-30 (177)
362 2it1_A 362AA long hypothetical 92.9 0.063 2.1E-06 51.5 3.7 25 162-186 28-52 (362)
363 3rlf_A Maltose/maltodextrin im 92.9 0.063 2.2E-06 51.7 3.7 24 163-186 29-52 (381)
364 3v9p_A DTMP kinase, thymidylat 92.9 0.069 2.4E-06 47.6 3.7 25 163-187 25-49 (227)
365 3vr4_A V-type sodium ATPase ca 92.9 0.22 7.6E-06 50.1 7.6 49 162-215 231-280 (600)
366 1g16_A RAS-related protein SEC 92.9 0.056 1.9E-06 45.1 3.0 23 164-186 4-26 (170)
367 3q72_A GTP-binding protein RAD 92.8 0.055 1.9E-06 45.1 2.9 22 165-186 4-25 (166)
368 1p5z_B DCK, deoxycytidine kina 92.8 0.042 1.4E-06 50.3 2.2 25 162-186 23-47 (263)
369 4gzl_A RAS-related C3 botulinu 92.8 0.065 2.2E-06 46.7 3.4 27 160-186 27-53 (204)
370 2ewv_A Twitching motility prot 92.8 0.085 2.9E-06 50.9 4.5 27 161-187 134-160 (372)
371 3c5c_A RAS-like protein 12; GD 92.8 0.059 2E-06 46.2 3.1 23 164-186 22-44 (187)
372 2fn4_A P23, RAS-related protei 92.8 0.058 2E-06 45.6 3.0 24 163-186 9-32 (181)
373 2r8r_A Sensor protein; KDPD, P 92.8 0.07 2.4E-06 47.2 3.5 37 165-204 8-44 (228)
374 1g29_1 MALK, maltose transport 92.7 0.062 2.1E-06 51.8 3.4 24 163-186 29-52 (372)
375 1v43_A Sugar-binding transport 92.7 0.068 2.3E-06 51.4 3.7 25 162-186 36-60 (372)
376 1r2q_A RAS-related protein RAB 92.7 0.066 2.3E-06 44.6 3.2 23 164-186 7-29 (170)
377 1tf7_A KAIC; homohexamer, hexa 92.7 0.16 5.5E-06 51.5 6.6 25 163-187 281-305 (525)
378 1upt_A ARL1, ADP-ribosylation 92.6 0.066 2.2E-06 44.8 3.1 23 164-186 8-30 (171)
379 1m2o_B GTP-binding protein SAR 92.6 0.065 2.2E-06 46.1 3.1 24 163-186 23-46 (190)
380 2cxx_A Probable GTP-binding pr 92.6 0.057 1.9E-06 46.2 2.7 22 165-186 3-24 (190)
381 3d31_A Sulfate/molybdate ABC t 92.6 0.057 1.9E-06 51.5 2.9 24 163-186 26-49 (348)
382 1z0f_A RAB14, member RAS oncog 92.6 0.067 2.3E-06 45.1 3.1 24 163-186 15-38 (179)
383 3pqc_A Probable GTP-binding pr 92.6 0.078 2.7E-06 45.5 3.6 24 163-186 23-46 (195)
384 3kkq_A RAS-related protein M-R 92.6 0.067 2.3E-06 45.5 3.1 24 163-186 18-41 (183)
385 2qm8_A GTPase/ATPase; G protei 92.6 0.088 3E-06 50.1 4.2 26 161-186 53-78 (337)
386 2cjw_A GTP-binding protein GEM 92.5 0.071 2.4E-06 46.0 3.3 23 164-186 7-29 (192)
387 4dsu_A GTPase KRAS, isoform 2B 92.5 0.066 2.3E-06 45.6 3.1 22 165-186 6-27 (189)
388 2h92_A Cytidylate kinase; ross 92.5 0.065 2.2E-06 47.3 3.1 23 164-186 4-26 (219)
389 3oaa_A ATP synthase subunit al 92.5 0.49 1.7E-05 46.8 9.5 88 162-254 161-264 (513)
390 2bme_A RAB4A, RAS-related prot 92.5 0.066 2.3E-06 45.6 3.0 24 163-186 10-33 (186)
391 2y8e_A RAB-protein 6, GH09086P 92.5 0.067 2.3E-06 45.1 3.0 23 164-186 15-37 (179)
392 1u0l_A Probable GTPase ENGC; p 92.5 0.11 3.8E-06 48.5 4.7 33 151-186 160-192 (301)
393 1lw7_A Transcriptional regulat 92.5 0.068 2.3E-06 51.5 3.3 24 163-186 170-193 (365)
394 3tqf_A HPR(Ser) kinase; transf 92.5 0.074 2.5E-06 44.8 3.1 23 164-186 17-39 (181)
395 2iwr_A Centaurin gamma 1; ANK 92.5 0.052 1.8E-06 45.9 2.3 23 164-186 8-30 (178)
396 3bc1_A RAS-related protein RAB 92.4 0.074 2.5E-06 45.5 3.2 23 164-186 12-34 (195)
397 2oil_A CATX-8, RAS-related pro 92.4 0.072 2.5E-06 45.8 3.1 24 163-186 25-48 (193)
398 2v3c_C SRP54, signal recogniti 92.4 0.055 1.9E-06 53.3 2.6 25 163-187 99-123 (432)
399 1mh1_A RAC1; GTP-binding, GTPa 92.4 0.073 2.5E-06 45.2 3.1 22 165-186 7-28 (186)
400 4akg_A Glutathione S-transfera 92.4 0.31 1.1E-05 58.4 9.3 79 164-254 1268-1346(2695)
401 3tw8_B RAS-related protein RAB 92.4 0.056 1.9E-06 45.7 2.4 24 163-186 9-32 (181)
402 3fdi_A Uncharacterized protein 92.4 0.083 2.8E-06 46.1 3.4 24 164-187 7-30 (201)
403 2a9k_A RAS-related protein RAL 92.3 0.074 2.5E-06 45.2 3.1 24 163-186 18-41 (187)
404 3bwd_D RAC-like GTP-binding pr 92.3 0.074 2.5E-06 45.0 3.1 23 164-186 9-31 (182)
405 2efe_B Small GTP-binding prote 92.3 0.074 2.5E-06 45.0 3.1 23 164-186 13-35 (181)
406 1ksh_A ARF-like protein 2; sma 92.3 0.079 2.7E-06 45.2 3.3 26 161-186 16-41 (186)
407 3t5g_A GTP-binding protein RHE 92.3 0.073 2.5E-06 45.1 3.0 24 163-186 6-29 (181)
408 3gmt_A Adenylate kinase; ssgci 92.3 0.08 2.7E-06 47.1 3.3 24 164-187 9-32 (230)
409 3t1o_A Gliding protein MGLA; G 92.3 0.078 2.7E-06 45.5 3.2 23 164-186 15-37 (198)
410 3dz8_A RAS-related protein RAB 92.3 0.079 2.7E-06 45.5 3.2 23 164-186 24-46 (191)
411 2bov_A RAla, RAS-related prote 92.2 0.076 2.6E-06 46.1 3.1 24 163-186 14-37 (206)
412 3cbq_A GTP-binding protein REM 92.2 0.061 2.1E-06 46.6 2.4 23 163-185 23-45 (195)
413 2atv_A RERG, RAS-like estrogen 92.2 0.076 2.6E-06 45.8 3.1 25 162-186 27-51 (196)
414 1oxx_K GLCV, glucose, ABC tran 92.2 0.054 1.8E-06 51.8 2.2 25 162-186 30-54 (353)
415 2b6h_A ADP-ribosylation factor 92.2 0.076 2.6E-06 45.8 3.0 27 160-186 26-52 (192)
416 2g6b_A RAS-related protein RAB 92.2 0.08 2.7E-06 44.8 3.1 23 164-186 11-33 (180)
417 1vg8_A RAS-related protein RAB 92.1 0.079 2.7E-06 46.1 3.1 24 163-186 8-31 (207)
418 3gd7_A Fusion complex of cysti 92.1 0.087 3E-06 51.0 3.6 25 162-186 46-70 (390)
419 1pui_A ENGB, probable GTP-bind 92.1 0.056 1.9E-06 47.2 2.1 26 161-186 24-49 (210)
420 1gwn_A RHO-related GTP-binding 92.1 0.078 2.7E-06 46.3 3.0 24 163-186 28-51 (205)
421 1cp2_A CP2, nitrogenase iron p 92.1 0.14 4.7E-06 46.8 4.8 38 164-204 2-39 (269)
422 2axn_A 6-phosphofructo-2-kinas 92.1 0.096 3.3E-06 53.0 4.0 26 162-187 34-59 (520)
423 3clv_A RAB5 protein, putative; 92.1 0.081 2.8E-06 45.6 3.1 24 163-186 7-30 (208)
424 2ew1_A RAS-related protein RAB 92.1 0.083 2.8E-06 46.0 3.1 24 163-186 26-49 (201)
425 2gza_A Type IV secretion syste 92.1 0.07 2.4E-06 51.3 2.8 24 163-186 175-198 (361)
426 2fh5_B SR-beta, signal recogni 92.0 0.082 2.8E-06 46.3 3.1 24 163-186 7-30 (214)
427 2fg5_A RAB-22B, RAS-related pr 92.0 0.08 2.7E-06 45.5 3.0 23 164-186 24-46 (192)
428 2gf9_A RAS-related protein RAB 92.0 0.084 2.9E-06 45.2 3.1 24 163-186 22-45 (189)
429 3tmk_A Thymidylate kinase; pho 92.0 0.22 7.6E-06 43.8 5.9 25 163-187 5-29 (216)
430 4dkx_A RAS-related protein RAB 92.0 0.083 2.9E-06 46.7 3.1 22 165-186 15-36 (216)
431 1zd9_A ADP-ribosylation factor 92.0 0.085 2.9E-06 45.2 3.1 23 164-186 23-45 (188)
432 1tq4_A IIGP1, interferon-induc 92.0 0.099 3.4E-06 51.0 3.8 25 162-186 68-92 (413)
433 1zbd_A Rabphilin-3A; G protein 92.0 0.082 2.8E-06 45.8 3.0 23 164-186 9-31 (203)
434 2a5j_A RAS-related protein RAB 92.0 0.087 3E-06 45.2 3.1 23 164-186 22-44 (191)
435 1g8f_A Sulfate adenylyltransfe 92.0 0.15 5E-06 51.2 5.1 27 162-188 394-420 (511)
436 3reg_A RHO-like small GTPase; 91.9 0.087 3E-06 45.3 3.1 23 164-186 24-46 (194)
437 3oes_A GTPase rhebl1; small GT 91.9 0.088 3E-06 45.7 3.1 24 163-186 24-47 (201)
438 3tkl_A RAS-related protein RAB 91.9 0.09 3.1E-06 45.2 3.1 24 163-186 16-39 (196)
439 2qnr_A Septin-2, protein NEDD5 91.8 0.073 2.5E-06 49.7 2.6 21 165-185 20-40 (301)
440 2g3y_A GTP-binding protein GEM 91.8 0.091 3.1E-06 46.2 3.1 23 163-185 37-59 (211)
441 1c9k_A COBU, adenosylcobinamid 91.8 0.079 2.7E-06 45.2 2.6 22 165-186 1-22 (180)
442 2p5s_A RAS and EF-hand domain 91.8 0.091 3.1E-06 45.5 3.1 25 162-186 27-51 (199)
443 3llu_A RAS-related GTP-binding 91.8 0.083 2.8E-06 45.6 2.8 24 163-186 20-43 (196)
444 1z06_A RAS-related protein RAB 91.8 0.093 3.2E-06 44.9 3.1 24 163-186 20-43 (189)
445 2q3h_A RAS homolog gene family 91.8 0.089 3E-06 45.5 3.0 24 163-186 20-43 (201)
446 2o52_A RAS-related protein RAB 91.7 0.088 3E-06 45.7 2.9 24 163-186 25-48 (200)
447 2obl_A ESCN; ATPase, hydrolase 91.7 0.096 3.3E-06 50.0 3.4 26 161-186 69-94 (347)
448 1x3s_A RAS-related protein RAB 91.7 0.096 3.3E-06 44.9 3.1 23 164-186 16-38 (195)
449 3kjh_A CO dehydrogenase/acetyl 91.7 0.19 6.6E-06 45.1 5.3 41 166-209 3-43 (254)
450 2gf0_A GTP-binding protein DI- 91.7 0.096 3.3E-06 45.1 3.1 24 163-186 8-31 (199)
451 2qu8_A Putative nucleolar GTP- 91.7 0.12 3.9E-06 46.0 3.7 25 162-186 28-52 (228)
452 2h17_A ADP-ribosylation factor 91.6 0.086 3E-06 44.8 2.7 23 164-186 22-44 (181)
453 2bcg_Y Protein YP2, GTP-bindin 91.6 0.095 3.3E-06 45.6 3.0 23 164-186 9-31 (206)
454 1ega_A Protein (GTP-binding pr 91.6 0.1 3.5E-06 48.8 3.3 24 163-186 8-31 (301)
455 2p67_A LAO/AO transport system 91.6 0.11 3.8E-06 49.4 3.7 28 160-187 53-80 (341)
456 4b3f_X DNA-binding protein smu 91.6 0.24 8.1E-06 51.7 6.4 61 150-216 194-254 (646)
457 2afh_E Nitrogenase iron protei 91.5 0.13 4.5E-06 47.6 4.0 39 163-204 2-40 (289)
458 2pt7_A CAG-ALFA; ATPase, prote 91.5 0.077 2.6E-06 50.3 2.4 86 163-260 171-256 (330)
459 2rcn_A Probable GTPase ENGC; Y 91.5 0.1 3.6E-06 49.8 3.3 23 164-186 216-238 (358)
460 2j1l_A RHO-related GTP-binding 91.4 0.097 3.3E-06 46.0 2.9 23 164-186 35-57 (214)
461 3lxx_A GTPase IMAP family memb 91.4 0.1 3.5E-06 46.8 3.0 25 162-186 28-52 (239)
462 2il1_A RAB12; G-protein, GDP, 91.4 0.087 3E-06 45.3 2.5 23 164-186 27-49 (192)
463 4bas_A ADP-ribosylation factor 91.4 0.085 2.9E-06 45.5 2.4 24 163-186 17-40 (199)
464 2atx_A Small GTP binding prote 91.3 0.11 3.6E-06 44.7 3.0 23 164-186 19-41 (194)
465 1f2t_A RAD50 ABC-ATPase; DNA d 91.3 0.14 4.7E-06 42.3 3.5 24 163-186 23-46 (149)
466 1bif_A 6-phosphofructo-2-kinas 91.3 0.11 3.9E-06 51.8 3.5 26 162-187 38-63 (469)
467 2hup_A RAS-related protein RAB 91.3 0.11 3.7E-06 45.1 3.0 24 163-186 29-52 (201)
468 2npi_A Protein CLP1; CLP1-PCF1 91.2 0.098 3.3E-06 52.0 3.0 25 162-186 137-161 (460)
469 2fv8_A H6, RHO-related GTP-bin 91.2 0.11 3.9E-06 45.2 3.1 23 164-186 26-48 (207)
470 2j0v_A RAC-like GTP-binding pr 91.2 0.11 3.8E-06 45.4 3.0 23 164-186 10-32 (212)
471 3cph_A RAS-related protein SEC 91.2 0.11 3.9E-06 45.3 3.1 24 163-186 20-43 (213)
472 3cr8_A Sulfate adenylyltranfer 91.2 0.092 3.1E-06 53.4 2.8 26 162-187 368-393 (552)
473 2fu5_C RAS-related protein RAB 91.1 0.069 2.4E-06 45.4 1.6 23 164-186 9-31 (183)
474 2gco_A H9, RHO-related GTP-bin 91.1 0.12 4E-06 44.9 3.0 23 164-186 26-48 (201)
475 3q3j_B RHO-related GTP-binding 91.1 0.12 4.1E-06 45.4 3.1 23 164-186 28-50 (214)
476 1m8p_A Sulfate adenylyltransfe 91.1 0.15 5.3E-06 52.1 4.3 26 162-187 395-420 (573)
477 2qag_B Septin-6, protein NEDD5 91.0 0.11 3.6E-06 50.9 2.9 21 166-186 45-65 (427)
478 2h57_A ADP-ribosylation factor 91.0 0.084 2.9E-06 45.2 2.0 23 164-186 22-44 (190)
479 3hdt_A Putative kinase; struct 91.0 0.16 5.6E-06 45.0 3.9 25 163-187 14-38 (223)
480 3ch4_B Pmkase, phosphomevalona 90.9 0.19 6.4E-06 43.6 4.1 26 161-186 9-34 (202)
481 3k53_A Ferrous iron transport 90.9 0.14 4.8E-06 46.9 3.6 23 164-186 4-26 (271)
482 3gqb_A V-type ATP synthase alp 90.9 0.2 7E-06 50.1 4.8 48 163-215 221-269 (578)
483 4dzz_A Plasmid partitioning pr 90.8 0.18 6.3E-06 43.7 4.0 43 164-209 2-45 (206)
484 2f7s_A C25KG, RAS-related prot 90.7 0.13 4.3E-06 45.2 2.9 24 163-186 25-48 (217)
485 2dpy_A FLII, flagellum-specifi 90.6 0.14 4.7E-06 50.5 3.4 26 161-186 155-180 (438)
486 1x6v_B Bifunctional 3'-phospho 90.6 0.16 5.5E-06 52.2 3.9 26 162-187 51-76 (630)
487 2qag_C Septin-7; cell cycle, c 90.5 0.12 4.2E-06 50.5 2.8 21 166-186 34-54 (418)
488 3geh_A MNME, tRNA modification 90.5 0.97 3.3E-05 44.8 9.3 22 165-186 226-247 (462)
489 3euj_A Chromosome partition pr 90.4 0.15 5E-06 50.8 3.3 23 164-186 30-52 (483)
490 1ypw_A Transitional endoplasmi 90.4 0.099 3.4E-06 56.0 2.3 45 141-187 478-535 (806)
491 3cpj_B GTP-binding protein YPT 90.3 0.15 5.2E-06 45.0 3.1 23 164-186 14-36 (223)
492 2xtp_A GTPase IMAP family memb 90.2 0.14 4.9E-06 46.4 2.9 24 163-186 22-45 (260)
493 4dhe_A Probable GTP-binding pr 90.2 0.11 3.6E-06 45.9 1.9 26 161-186 27-52 (223)
494 3cwq_A Para family chromosome 90.1 0.36 1.2E-05 42.2 5.3 42 165-210 2-44 (209)
495 3zq6_A Putative arsenical pump 90.1 0.25 8.6E-06 46.6 4.5 46 163-211 14-59 (324)
496 2aka_B Dynamin-1; fusion prote 90.0 0.32 1.1E-05 45.1 5.2 25 162-186 25-49 (299)
497 3iby_A Ferrous iron transport 90.0 0.18 6.2E-06 45.8 3.3 23 164-186 2-24 (256)
498 4i1u_A Dephospho-COA kinase; s 90.0 0.18 6.2E-06 44.1 3.2 23 163-185 9-31 (210)
499 1mky_A Probable GTP-binding pr 89.9 0.42 1.4E-05 47.2 6.2 24 163-186 180-203 (439)
500 3iev_A GTP-binding protein ERA 89.9 0.18 6.1E-06 47.2 3.3 24 163-186 10-33 (308)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.2e-49 Score=410.92 Aligned_cols=309 Identities=17% Similarity=0.186 Sum_probs=244.9
Q ss_pred cccchHHHHHHHHHHhcCC---CceEEEEEcCCCCcHHHHHHHHHh--hhccCCCCCCeEEEEEeCCCC--CHHHHHHHH
Q 011568 143 AGKRTGKIVKEIWEDLMGD---KVSKIGVWGMGGIGKTTIMSNINN--KLHEKPNKFNDVIWVTVSQPL--DLIKLQTEI 215 (483)
Q Consensus 143 vGr~~~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i 215 (483)
+||+ +++++|.++|..+ +.++|+|+||||+||||||+++|+ + .+++.+|+.++||++++.+ +...++..|
T Consensus 131 ~GR~--~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~-~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIRE--YHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSD-QLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCH--HHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCS-STBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCch--HHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhh-HHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 6999 8999999998643 579999999999999999999998 4 4588999999999999875 799999999
Q ss_pred HHHhcccCC-------CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccCccccccCCCCCCCCcEEEEecCChhHhhhc
Q 011568 216 ATALKQSLP-------ENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFPLEEVGIPEPNEENGCKLVITTRSCRVCRSM 288 (483)
Q Consensus 216 l~~l~~~~~-------~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~ilvTtR~~~v~~~~ 288 (483)
+.+++.... ...+...+...+.+.+.+++|+||||||||+...+ .+ + ..+||+||||||+..++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~-~~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A-QELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H-HHTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----c-ccCCCEEEEEcCCHHHHHHc
Confidence 999986421 12244566788889998823999999999987654 11 1 12799999999999999887
Q ss_pred CC--ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHhhcCCCChHHHHHHHHHHhhh
Q 011568 289 KC--KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAASMSGEEEIYEWQNALNELRGR 366 (483)
Q Consensus 289 ~~--~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~ 366 (483)
+. ..|+|++|+.++||+||.+.++.... ++.+.+++.+|+++|+|+||||+++|+.++.+ + |... +.+...
T Consensus 282 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~--~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~ 354 (549)
T 2a5y_B 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPV--GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNK 354 (549)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHH
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHH
Confidence 53 35999999999999999999876532 23478899999999999999999999999764 3 4333 334333
Q ss_pred hccCCCchhhHHhHHHhhhcCCCCcchhHHHH-----------HhcccCCCccccHHHHHHHHHHc--CCCCCcccHHHH
Q 011568 367 LRSLNDVDAKVLGRLEFSYHRLKDEKLRQCFL-----------DCALYPEDFPILKDELIEYWIAE--GFIEEVKDVQAK 433 (483)
Q Consensus 367 ~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~~-----------~~s~fp~~~~i~~~~li~~w~ae--g~i~~~~~~~~~ 433 (483)
++.. ....+..++.+||+.| |.++|.||+ |||+||+++.|+ +.+|+|+ ||+.+.......
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L-~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~ 427 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSL-AMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLD 427 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSH-HHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCT
T ss_pred hhcc--cHHHHHHHHhcccccc-cHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCH
Confidence 3322 2356888999999999 999999999 999999999998 8999999 999765422334
Q ss_pred HHHHHHHHHHHHHcCccccccC--CCeEEeChHHHHHHhhcCcC
Q 011568 434 YDRGHTILNRLVNCCLLESAED--GSCVKMHDLIRDMQGRTPCM 475 (483)
Q Consensus 434 ~~~~~~~l~~L~~~sll~~~~~--~~~~~mH~lvr~~a~~~~~~ 475 (483)
++.++ +|++|+++|||++... ..+|+|||+||+||++++..
T Consensus 428 ~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~ 470 (549)
T 2a5y_B 428 DEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDA 470 (549)
T ss_dssp HHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCT
T ss_pred HHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHH
Confidence 45666 9999999999998653 45799999999999987743
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3.1e-41 Score=355.43 Aligned_cols=284 Identities=18% Similarity=0.209 Sum_probs=225.8
Q ss_pred ccccchHHHHHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCe-EEEEEeCCCCCHHHHHHHHHHHh
Q 011568 142 LAGKRTGKIVKEIWEDLMG-DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFND-VIWVTVSQPLDLIKLQTEIATAL 219 (483)
Q Consensus 142 ~vGr~~~~~~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~il~~l 219 (483)
.|||+ +++++|.++|.+ ++.++|+|+||||+||||||++++++ .++..+|+. ++|+++++.++...++..|+..+
T Consensus 130 ~VGRe--~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d-~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 130 NVSRL--QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS-YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CCCCH--HHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHH-CHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCcH--HHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHh-hHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 59999 899999999875 55799999999999999999999987 556778987 99999999989888888888765
Q ss_pred cccC---CCC--------CCHHHHHHHHHHHHh--cCCeEEEEEeCCCCccCccccccCCCCCCCCcEEEEecCChhHhh
Q 011568 220 KQSL---PEN--------EDKVSRAGRLLRMLK--AKEKFVLILDDMWEAFPLEEVGIPEPNEENGCKLVITTRSCRVCR 286 (483)
Q Consensus 220 ~~~~---~~~--------~~~~~~~~~l~~~l~--~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~ilvTtR~~~v~~ 286 (483)
+... ... .+.......+.+.+. .++|+||||||+|+...|+.+ .+||+||||||+..++.
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHH
Confidence 4321 111 112344556666552 239999999999998777654 26899999999999886
Q ss_pred hcCC-ceEecc------CCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHhhcCCC-ChHHHHH
Q 011568 287 SMKC-KQVEIE------LLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAASMSGEE-EIYEWQN 358 (483)
Q Consensus 287 ~~~~-~~~~l~------~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~-~~~~w~~ 358 (483)
.+.. ..+.++ +|+.+||++||.+..... ..+...++ |+|+||||+++|+.|+.+. +..+|..
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 4432 245566 899999999999984332 12233333 9999999999999998753 6777864
Q ss_pred HHHHHhhhhccCCCchhhHHhHHHhhhcCCCCcch-hHHHHHhcccCCCccccHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 011568 359 ALNELRGRLRSLNDVDAKVLGRLEFSYHRLKDEKL-RQCFLDCALYPEDFPILKDELIEYWIAEGFIEEVKDVQAKYDRG 437 (483)
Q Consensus 359 ~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~ 437 (483)
. ....+..+|.+||+.| |++. |.||++||+||+++.|+.+.++.+|+++|. +.+
T Consensus 350 ~-------------~~~~I~aaLelSYd~L-p~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe-----------edA 404 (1221)
T 1vt4_I 350 V-------------NCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-----------SDV 404 (1221)
T ss_dssp C-------------SCHHHHHHHHHHHHHS-CTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-----------HHH
T ss_pred C-------------ChhHHHHHHHHHHHhC-CHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-----------HHH
Confidence 2 1367999999999999 7778 999999999999999999999999988861 357
Q ss_pred HHHHHHHHHcCccccccCCCeEEeChHHHHHHh
Q 011568 438 HTILNRLVNCCLLESAEDGSCVKMHDLIRDMQG 470 (483)
Q Consensus 438 ~~~l~~L~~~sll~~~~~~~~~~mH~lvr~~a~ 470 (483)
+.+|++|+++||++......+|+||||+++++.
T Consensus 405 e~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 889999999999998644678999999999663
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.4e-40 Score=372.92 Aligned_cols=308 Identities=21% Similarity=0.337 Sum_probs=245.9
Q ss_pred cccccccchHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC-CeEEEEEeCCCCC--HHHHHH
Q 011568 139 TRNLAGKRTGKIVKEIWEDLM--GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKF-NDVIWVTVSQPLD--LIKLQT 213 (483)
Q Consensus 139 ~~~~vGr~~~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~~~~~~--~~~~~~ 213 (483)
+..||||+ +++++|.++|. +++.++|+|+||||+||||||++++++......+| +.++|++++.... ....+.
T Consensus 123 ~~~~vgR~--~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 123 PVIFVTRK--KLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CSSCCCCH--HHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CceeccHH--HHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence 45699999 89999999985 35689999999999999999999998833334545 5678999988543 455577
Q ss_pred HHHHHhcccCC----CCCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCccCccccccCCCCCCCCcEEEEecCChhHhhhc
Q 011568 214 EIATALKQSLP----ENEDKVSRAGRLLRMLKA-KEKFVLILDDMWEAFPLEEVGIPEPNEENGCKLVITTRSCRVCRSM 288 (483)
Q Consensus 214 ~il~~l~~~~~----~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~ilvTtR~~~v~~~~ 288 (483)
.++..+..... ...+.......+...+.+ ++|+||||||+|+...|..+ .+||+||||||++.++..+
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~ 273 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSV 273 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTC
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhh
Confidence 77777765332 234567777788888876 13999999999988766643 5689999999999988543
Q ss_pred -CC-ceEeccC-CChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHhhcCCCChHHHHHHHHHHhh
Q 011568 289 -KC-KQVEIEL-LSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAASMSGEEEIYEWQNALNELRG 365 (483)
Q Consensus 289 -~~-~~~~l~~-L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l~~l~~ 365 (483)
.. ..+++.+ |+.+++++||...++... +. .++.+++|+++|+|+||||+++|++|+.+. ..|...++.+..
T Consensus 274 ~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-~~---~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~ 347 (1249)
T 3sfz_A 274 MGPKHVVPVESGLGREKGLEILSLFVNMKK-ED---LPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQN 347 (1249)
T ss_dssp CSCBCCEECCSSCCHHHHHHHHHHHHTSCS-TT---CCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHS
T ss_pred cCCceEEEecCCCCHHHHHHHHHHhhCCCh-hh---CcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhh
Confidence 33 4589986 999999999999885442 22 556799999999999999999999998744 469999988875
Q ss_pred hhccC-----CCchhhHHhHHHhhhcCCCCcchhHHHHHhcccCCCccccHHHHHHHHHHcCCCCCcccHHHHHHHHHHH
Q 011568 366 RLRSL-----NDVDAKVLGRLEFSYHRLKDEKLRQCFLDCALYPEDFPILKDELIEYWIAEGFIEEVKDVQAKYDRGHTI 440 (483)
Q Consensus 366 ~~~~~-----~~~~~~i~~~l~~sy~~L~~~~~k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~ 440 (483)
..+.. ......+..+|.+||+.| +++.|.||+|||+||+++.|+++.++.+|.++ .+.++.+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~s~~~L-~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~ 414 (1249)
T 3sfz_A 348 KQFKRIRKSSSYDYEALDEAMSISVEML-REDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDI 414 (1249)
T ss_dssp CCCCCSSCTTCTTHHHHHHHHHHHHHTS-CTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHH
T ss_pred hhhhhcccccccchHHHHHHHHHHHHhC-CHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHH
Confidence 44221 122357999999999999 88899999999999999999999999999554 2568899
Q ss_pred HHHHHHcCccccccCC--CeEEeChHHHHHHhhcCc
Q 011568 441 LNRLVNCCLLESAEDG--SCVKMHDLIRDMQGRTPC 474 (483)
Q Consensus 441 l~~L~~~sll~~~~~~--~~~~mH~lvr~~a~~~~~ 474 (483)
|++|+++|||+....+ .+|+||++||++|++.+.
T Consensus 415 l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~ 450 (1249)
T 3sfz_A 415 LQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNR 450 (1249)
T ss_dssp HHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTG
T ss_pred HHHHHhccceEEecCCCceEEEecHHHHHHHHhhhh
Confidence 9999999999976543 369999999999998754
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6.2e-38 Score=329.24 Aligned_cols=304 Identities=22% Similarity=0.327 Sum_probs=235.9
Q ss_pred cccccccchHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhhccC-CCCCC-eEEEEEeCCCCCHHHHHHH
Q 011568 139 TRNLAGKRTGKIVKEIWEDLMG--DKVSKIGVWGMGGIGKTTIMSNINNKLHEK-PNKFN-DVIWVTVSQPLDLIKLQTE 214 (483)
Q Consensus 139 ~~~~vGr~~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~~f~-~~~wv~~~~~~~~~~~~~~ 214 (483)
+..||||+ +++++|.++|.. ++.++|+|+||||+||||||.+++++ ... ..+|+ .++|++++.. +...++..
T Consensus 123 ~~~~vGR~--~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~-~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 123 PVVFVTRK--KLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD-HSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CSSCCCCH--HHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC-HHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCeecccH--HHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc-hhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 45699999 899999999873 46789999999999999999999987 333 56785 7999999765 33334433
Q ss_pred ---HHHHhccc----CCCCCCHHHHHHHHHHHHhcC-CeEEEEEeCCCCccCccccccCCCCCCCCcEEEEecCChhHhh
Q 011568 215 ---IATALKQS----LPENEDKVSRAGRLLRMLKAK-EKFVLILDDMWEAFPLEEVGIPEPNEENGCKLVITTRSCRVCR 286 (483)
Q Consensus 215 ---il~~l~~~----~~~~~~~~~~~~~l~~~l~~~-~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~ilvTtR~~~v~~ 286 (483)
++..++.. .....+.......+...+.+. +++||||||+|+...+..+ .++++||||||+..++.
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHH
Confidence 34455531 122345667777777777763 6899999999987655432 45899999999998877
Q ss_pred hcCCceEec---cCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHhhcCCCChHHHHHHHHHH
Q 011568 287 SMKCKQVEI---ELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAASMSGEEEIYEWQNALNEL 363 (483)
Q Consensus 287 ~~~~~~~~l---~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l~~l 363 (483)
.+....+++ ++|+.+++++||...++.... . ..+.+.+|+++|+|+||||.++|+.++... ..|...++.+
T Consensus 272 ~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~-~---~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l 345 (591)
T 1z6t_A 272 SVMGPKYVVPVESSLGKEKGLEILSLFVNMKKA-D---LPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQL 345 (591)
T ss_dssp TCCSCEEEEECCSSCCHHHHHHHHHHHHTSCGG-G---SCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHH
T ss_pred hcCCCceEeecCCCCCHHHHHHHHHHHhCCCcc-c---ccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHH
Confidence 655444444 589999999999998865321 1 345789999999999999999999998643 4698888887
Q ss_pred hhhhcc-----CCCchhhHHhHHHhhhcCCCCcchhHHHHHhcccCCCccccHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 011568 364 RGRLRS-----LNDVDAKVLGRLEFSYHRLKDEKLRQCFLDCALYPEDFPILKDELIEYWIAEGFIEEVKDVQAKYDRGH 438 (483)
Q Consensus 364 ~~~~~~-----~~~~~~~i~~~l~~sy~~L~~~~~k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~ 438 (483)
...... .......+..++..||+.| |+..|.||++||+||+++.|+.+.+..+|.++ .+.+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L-~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~ 412 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEML-REDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVE 412 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTS-CTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHH
T ss_pred HHhHHHHhhhccccchHHHHHHHHHHHHhC-CHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHH
Confidence 754321 1223457999999999999 88899999999999999999999999999543 13578
Q ss_pred HHHHHHHHcCccccccC--CCeEEeChHHHHHHhhc
Q 011568 439 TILNRLVNCCLLESAED--GSCVKMHDLIRDMQGRT 472 (483)
Q Consensus 439 ~~l~~L~~~sll~~~~~--~~~~~mH~lvr~~a~~~ 472 (483)
.+|++|+++||++...+ ..+|+||++||+++++.
T Consensus 413 ~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 413 DILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 89999999999986543 34799999999999986
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.77 E-value=3.8e-17 Score=159.53 Aligned_cols=293 Identities=12% Similarity=0.120 Sum_probs=177.4
Q ss_pred ccccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCC------CHHHH
Q 011568 138 TTRNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPL------DLIKL 211 (483)
Q Consensus 138 ~~~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~------~~~~~ 211 (483)
.+..++||+ ++++.+.+++..+ +++.|+|++|+|||||++++++. . . .+|+++.... +...+
T Consensus 10 ~~~~~~gR~--~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~---~----~-~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 10 RREDIFDRE--EESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNE---R----P-GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp SGGGSCSCH--HHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHH---S----S-EEEEEHHHHHHTTTCBCHHHH
T ss_pred ChHhcCChH--HHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHH---c----C-cEEEEeecccccccCCCHHHH
Confidence 345699999 8899998888654 79999999999999999999988 2 1 6788765432 56666
Q ss_pred HHHHHHHhcc-----------------cCC-CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC---------cccccc
Q 011568 212 QTEIATALKQ-----------------SLP-ENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP---------LEEVGI 264 (483)
Q Consensus 212 ~~~il~~l~~-----------------~~~-~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~---------~~~l~~ 264 (483)
+..+...+.. ..+ ...+.......+.+.....++++|||||++.... +..+..
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 7766665532 000 0123444555555554432489999999976432 121211
Q ss_pred CCCCCCCCcEEEEecCChhH-hhh---------c-C--CceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHH
Q 011568 265 PEPNEENGCKLVITTRSCRV-CRS---------M-K--CKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVE 331 (483)
Q Consensus 265 ~l~~~~~~s~ilvTtR~~~v-~~~---------~-~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~ 331 (483)
.. ....+..+|+|++.... ... . + ...+.+.+|+.+|+.+++........... .++.+..|+.
T Consensus 158 ~~-~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~---~~~~~~~i~~ 233 (350)
T 2qen_A 158 AY-DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV---PENEIEEAVE 233 (350)
T ss_dssp HH-HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHH
T ss_pred HH-HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHH
Confidence 11 11246789999887543 111 1 1 13589999999999999987543222222 3567889999
Q ss_pred HcCCchHHHHHHHHhhcCCCChHHHH-HHHHHHhhhhccCCCchhhHHhHHHhhhcCCCCcchhHHHHHhcccCCCcccc
Q 011568 332 ECGRLPLAIVTVAASMSGEEEIYEWQ-NALNELRGRLRSLNDVDAKVLGRLEFSYHRLKDEKLRQCFLDCALYPEDFPIL 410 (483)
Q Consensus 332 ~~~G~Plai~~~~~~l~~~~~~~~w~-~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~~~~s~fp~~~~i~ 410 (483)
.|+|+|+++..++..+....+...+. ...+..... ....+.. +.++ ++..+..+..+|. .. .+
T Consensus 234 ~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~---l~~~---~~~~~~~l~~la~--g~--~~ 297 (350)
T 2qen_A 234 LLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGL------IMGELEE---LRRR---SPRYVDILRAIAL--GY--NR 297 (350)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------HHHHHHH---HHHH---CHHHHHHHHHHHT--TC--CS
T ss_pred HhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHH------HHHHHHH---HHhC---ChhHHHHHHHHHh--CC--CC
Confidence 99999999999887643212222221 111111100 0011111 1111 4667888888887 22 34
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHcCccccccCCCeEEeChHHHHHHh
Q 011568 411 KDELIEYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESAEDGSCVKMHDLIRDMQG 470 (483)
Q Consensus 411 ~~~li~~w~aeg~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~mH~lvr~~a~ 470 (483)
...+....-.. .- .. .......+++.|++.+||...+ +.+..-|++++++.+
T Consensus 298 ~~~l~~~~~~~-~~-~~-----~~~~~~~~l~~L~~~gli~~~~-~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 298 WSLIRDYLAVK-GT-KI-----PEPRLYALLENLKKMNWIVEED-NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHHT-TC-CC-----CHHHHHHHHHHHHHTTSEEEET-TEEEESSHHHHHHHT
T ss_pred HHHHHHHHHHH-hC-CC-----CHHHHHHHHHHHHhCCCEEecC-CEEEEecHHHHHHHc
Confidence 44444333221 10 00 1135678999999999998763 333345889998865
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.75 E-value=1.6e-16 Score=155.51 Aligned_cols=286 Identities=14% Similarity=0.130 Sum_probs=170.1
Q ss_pred ccccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCC-----CCHHHHH
Q 011568 138 TTRNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQP-----LDLIKLQ 212 (483)
Q Consensus 138 ~~~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~ 212 (483)
.+..++||+ ++++.|.+ +.. +++.|+|++|+|||+|++++.+.. .. ..+|+++... .+...++
T Consensus 11 ~~~~~~gR~--~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 11 NRKDFFDRE--KEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL---NL---PYIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp SGGGSCCCH--HHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH---TC---CEEEEEGGGGTTCSCCCHHHHH
T ss_pred CHHHhcChH--HHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc---CC---CEEEEEchhhccccCCCHHHHH
Confidence 345699999 89999988 765 699999999999999999999883 21 2688887642 3455555
Q ss_pred HHHHHHhcc------------------cCC-----------CCCCHHHHHHHHHHHHhc-C-CeEEEEEeCCCCcc----
Q 011568 213 TEIATALKQ------------------SLP-----------ENEDKVSRAGRLLRMLKA-K-EKFVLILDDMWEAF---- 257 (483)
Q Consensus 213 ~~il~~l~~------------------~~~-----------~~~~~~~~~~~l~~~l~~-~-~~~LlVlDdv~~~~---- 257 (483)
..+...+.. ..+ ...... .+.+.+.. . ++++|||||++...
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~l~~~~~~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFA----NLLESFEQASKDNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHH----HHHHHHHHTCSSCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHH----HHHHHHHhcCCCCeEEEEECHHHhhccCc
Confidence 555544321 000 011222 33333332 1 48999999997532
Q ss_pred -CccccccCCCCCCCCcEEEEecCChhHhhh----------cC---CceEeccCCChHHHHHHHHHhhCCCCCCCCCcch
Q 011568 258 -PLEEVGIPEPNEENGCKLVITTRSCRVCRS----------MK---CKQVEIELLSKKEALNLFIDKVGSSILQVPTLNE 323 (483)
Q Consensus 258 -~~~~l~~~l~~~~~~s~ilvTtR~~~v~~~----------~~---~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~ 323 (483)
.+..+...+.....+..+|+|++....... .. ...+.+.+|+.+++.+++.........+. .
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~----~ 230 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF----K 230 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC----C
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC----C
Confidence 221111111111246789999987643211 11 13589999999999999987542111111 1
Q ss_pred HHHHHHHHHcCCchHHHHHHHHhhcCCCChHHHHHH-HHHHhhhhccCCCchhhHHhHHH-hhh--cCCCCcchhHHHHH
Q 011568 324 GIINEVVEECGRLPLAIVTVAASMSGEEEIYEWQNA-LNELRGRLRSLNDVDAKVLGRLE-FSY--HRLKDEKLRQCFLD 399 (483)
Q Consensus 324 ~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~-l~~l~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~~k~c~~~ 399 (483)
+ ...|+..|+|+|+++..++..+....+...|... .+... ..+..-+. +.+ ..| ++..+..+..
T Consensus 231 ~-~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~l-~~~~~~~l~~ 298 (357)
T 2fna_A 231 D-YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----------KLILKEFENFLHGREIA-RKRYLNIMRT 298 (357)
T ss_dssp C-HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----------HHHHHHHHHHHTTCGGG-HHHHHHHHHH
T ss_pred c-HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----------HHHHHHHHHHhhccccc-cHHHHHHHHH
Confidence 1 2789999999999999998776432333333211 11110 11111121 111 157 7788999999
Q ss_pred hcccCCCccccHHHHHHHHH-HcCCCCCcccHHHHHHHHHHHHHHHHHcCccccccCCCeEE-eChHHHHHH
Q 011568 400 CALYPEDFPILKDELIEYWI-AEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESAEDGSCVK-MHDLIRDMQ 469 (483)
Q Consensus 400 ~s~fp~~~~i~~~~li~~w~-aeg~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~-mH~lvr~~a 469 (483)
+|. +. +...+....- ..|. + ........+++.|++.+||...+ + .|+ -|++++++.
T Consensus 299 la~---g~--~~~~l~~~~~~~~g~--~-----~~~~~~~~~L~~L~~~gli~~~~-~-~y~f~~~~~~~~l 356 (357)
T 2fna_A 299 LSK---CG--KWSDVKRALELEEGI--E-----ISDSEIYNYLTQLTKHSWIIKEG-E-KYCPSEPLISLAF 356 (357)
T ss_dssp HTT---CB--CHHHHHHHHHHHHCS--C-----CCHHHHHHHHHHHHHTTSEEESS-S-CEEESSHHHHHHT
T ss_pred HHc---CC--CHHHHHHHHHHhcCC--C-----CCHHHHHHHHHHHHhCCCEEecC-C-EEEecCHHHHHhh
Confidence 988 21 3344432211 1121 0 01135678899999999998764 3 455 589999875
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.70 E-value=3.4e-16 Score=156.38 Aligned_cols=303 Identities=13% Similarity=0.086 Sum_probs=181.3
Q ss_pred ccccccchHHHHHHHHHHh-c----C--CCceEEEE--EcCCCCcHHHHHHHHHhhhccC--CCCCC-eEEEEEeCCCCC
Q 011568 140 RNLAGKRTGKIVKEIWEDL-M----G--DKVSKIGV--WGMGGIGKTTIMSNINNKLHEK--PNKFN-DVIWVTVSQPLD 207 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L-~----~--~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~--~~~f~-~~~wv~~~~~~~ 207 (483)
..++||+ ++++.+..++ . + .....+.| +|++|+|||||++.+++.+... ...+. .++|+++....+
T Consensus 22 ~~l~gR~--~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 22 PELRVRR--GEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp SSCSSSC--HHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCChH--HHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 5699999 7888887777 3 2 34567777 9999999999999999874221 01122 367888777778
Q ss_pred HHHHHHHHHHHhcccCCC-CCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc--------CccccccCC---CCCC--CC
Q 011568 208 LIKLQTEIATALKQSLPE-NEDKVSRAGRLLRMLKA-KEKFVLILDDMWEAF--------PLEEVGIPE---PNEE--NG 272 (483)
Q Consensus 208 ~~~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~--------~~~~l~~~l---~~~~--~~ 272 (483)
...++..++.+++...+. ..+.......+...+.. +++++|||||++... .+..+...+ +..+ ..
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 999999999999875432 23455566666666652 379999999997532 122121111 1112 34
Q ss_pred cEEEEecCChhHh-----------hhcCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcC------C
Q 011568 273 CKLVITTRSCRVC-----------RSMKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECG------R 335 (483)
Q Consensus 273 s~ilvTtR~~~v~-----------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~------G 335 (483)
..+|+||+...+. .... ..+.+.+|+.++++++|...+.....+ ....++....|++.|+ |
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~-~~i~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIG-FKLHLPAYKSRELYTILEQRAELGLRD-TVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCS-EEEECCCCCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHHHHHCGGGTSCC
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcC-CeeeeCCCCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHhccCCC
Confidence 4577788654422 1111 238999999999999997654211110 1114678889999999 9
Q ss_pred chHHHHHHHHhh-----cCC---CChHHHHHHHHHHhhhhccCCCchhhHHhHHHhhhcCCCCcchhHHHHHhcccC--C
Q 011568 336 LPLAIVTVAASM-----SGE---EEIYEWQNALNELRGRLRSLNDVDAKVLGRLEFSYHRLKDEKLRQCFLDCALYP--E 405 (483)
Q Consensus 336 ~Plai~~~~~~l-----~~~---~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~~~~s~fp--~ 405 (483)
+|..+..+.... ... -+...+...+.... . ...+.-++..| |...+.++..++.+. .
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~----------~--~~~~~~~l~~l-~~~~~~~l~aia~l~~~~ 324 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE----------A--ASIQTHELEAL-SIHELIILRLIAEATLGG 324 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSS-CHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh----------c--cchHHHHHHcC-CHHHHHHHHHHHHHHhcC
Confidence 997665544321 111 12233332222210 0 22344567788 888899988888753 2
Q ss_pred CccccHHHHHHHHH--H---cCCCCCcccHHHHHHHHHHHHHHHHHcCccccccC----CCeEEeChHH
Q 011568 406 DFPILKDELIEYWI--A---EGFIEEVKDVQAKYDRGHTILNRLVNCCLLESAED----GSCVKMHDLI 465 (483)
Q Consensus 406 ~~~i~~~~li~~w~--a---eg~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~----~~~~~mH~lv 465 (483)
+..+....+...+. + .|. .+. .......+++.|...+||..... ..+|++|.+.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 325 MEWINAGLLRQRYEDASLTMYNV-KPR-----GYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp CSSBCHHHHHHHHHHHHHHHSCC-CCC-----CHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CCCccHHHHHHHHHHHHHhhcCC-CCC-----CHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 33455555544332 2 121 110 11346678999999999987532 2345555443
No 8
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.56 E-value=2.3e-13 Score=134.43 Aligned_cols=289 Identities=16% Similarity=0.141 Sum_probs=179.5
Q ss_pred ccccccchHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHhhhccCC---CCCCeEEEEEeCCCCCHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLM----GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKP---NKFNDVIWVTVSQPLDLIKLQ 212 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~ 212 (483)
..++||+ ++++.+..++. ....+.+.|+|++|+||||||+.+++.+.... +.-...+|+++....+...++
T Consensus 19 ~~~~gr~--~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHRE--AELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCH--HHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHH--HHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 5699999 78899888873 34567899999999999999999998842210 001246788888888899999
Q ss_pred HHHHHHhcccCCC-CCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCccC----cccc---ccCCCCC--CCCcEEEEecCC
Q 011568 213 TEIATALKQSLPE-NEDKVSRAGRLLRMLKA-KEKFVLILDDMWEAFP----LEEV---GIPEPNE--ENGCKLVITTRS 281 (483)
Q Consensus 213 ~~il~~l~~~~~~-~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~~----~~~l---~~~l~~~--~~~s~ilvTtR~ 281 (483)
..++.+++...+. ..+.......+...+.. +++.+||||+++.... .+.+ ....... ..+..+|+||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 9999999775433 23355666777777754 3689999999985321 1111 1111111 345567777765
Q ss_pred hh--------HhhhcCCceEeccCCChHHHHHHHHHhhCC--CCCCCCCcchHHHHHHHHHcC---CchHH-HHHHHHhh
Q 011568 282 CR--------VCRSMKCKQVEIELLSKKEALNLFIDKVGS--SILQVPTLNEGIINEVVEECG---RLPLA-IVTVAASM 347 (483)
Q Consensus 282 ~~--------v~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~~~---G~Pla-i~~~~~~l 347 (483)
.. +...+....+.+++++.++..+++...+.. ..... .++....+++.++ |.|.. +..+..+.
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVL---DPDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTB---CSSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCC---CHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 42 222333346899999999999999887532 11111 3456778888888 99943 33333222
Q ss_pred c-----C--CCChHHHHHHHHHHhhhhccCCCchhhHHhHHHhhhcCCCCcchhHHHHHhc-ccCCCccccHHHHHHHH-
Q 011568 348 S-----G--EEEIYEWQNALNELRGRLRSLNDVDAKVLGRLEFSYHRLKDEKLRQCFLDCA-LYPEDFPILKDELIEYW- 418 (483)
Q Consensus 348 ~-----~--~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~~~~s-~fp~~~~i~~~~li~~w- 418 (483)
. + .-+.+.+..+++... ...+.-++..| +...+..+..++ ++.....+....+.+..
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l-~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIE-------------RDRVSEVVRTL-PLHAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHH-------------HHHHHHHHHSS-CHHHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHh-------------hchHHHHHHcC-CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 1 1 124566666655532 12345567788 776666665555 34322345455444332
Q ss_pred ---HHcCCCCCcccHHHHHHHHHHHHHHHHHcCccccc
Q 011568 419 ---IAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESA 453 (483)
Q Consensus 419 ---~aeg~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~ 453 (483)
-..| ..+. ....+..+++.|...|+++..
T Consensus 320 ~~~~~~~-~~~~-----~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 320 ELTSTLG-LEHV-----TLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHTT-CCCC-----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhcC-CCCC-----CHHHHHHHHHHHHhCCCeEEE
Confidence 2223 1111 124667899999999999874
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=1.3e-12 Score=129.01 Aligned_cols=287 Identities=11% Similarity=0.060 Sum_probs=176.0
Q ss_pred cccccccchHHHHHHHHHHh----cCCCceEEEEEcCCCCcHHHHHHHHHhhhccC---CCC--CCeEEEEEeCCCC-CH
Q 011568 139 TRNLAGKRTGKIVKEIWEDL----MGDKVSKIGVWGMGGIGKTTIMSNINNKLHEK---PNK--FNDVIWVTVSQPL-DL 208 (483)
Q Consensus 139 ~~~~vGr~~~~~~~~l~~~L----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~--f~~~~wv~~~~~~-~~ 208 (483)
+..++||+ ++++.+..++ ..+..+.+.|+|++|+|||+||+.+++.+... ... ....+|+++.... +.
T Consensus 19 p~~l~gr~--~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFRE--DILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCH--HHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChH--HHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 35699998 6777776555 34456789999999999999999999874221 111 2346788877766 88
Q ss_pred HHHHHHHHHHhcc-cCC-CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC---ccccccCCCCCCCCcEEEEecCChh
Q 011568 209 IKLQTEIATALKQ-SLP-ENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP---LEEVGIPEPNEENGCKLVITTRSCR 283 (483)
Q Consensus 209 ~~~~~~il~~l~~-~~~-~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~---~~~l~~~l~~~~~~s~ilvTtR~~~ 283 (483)
..++..++.++.. ..+ ...+.......+...+.. .+.+|||||++.... .+.+...+.....+..+|+||+...
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~ 175 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCc
Confidence 8999999988833 221 123345667777777777 445999999974321 1110111111115778888887642
Q ss_pred H--------hhhcCCceEeccCCChHHHHHHHHHhhCCC--CCCCCCcchHHHHHHHHHcC---CchH-HHHHHHHhh--
Q 011568 284 V--------CRSMKCKQVEIELLSKKEALNLFIDKVGSS--ILQVPTLNEGIINEVVEECG---RLPL-AIVTVAASM-- 347 (483)
Q Consensus 284 v--------~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~~~---G~Pl-ai~~~~~~l-- 347 (483)
. ..... ..+.+++++.++..++|...+... .... .++....+++.|+ |.|. ++..+-...
T Consensus 176 ~~~~l~~~l~sr~~-~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 176 VRDYMEPRVLSSLG-PSVIFKPYDAEQLKFILSKYAEYGLIKGTY---DDEILSYIAAISAKEHGDARKAVNLLFRAAQL 251 (384)
T ss_dssp TTTTSCHHHHHTCC-CEEEECCCCHHHHHHHHHHHHHHTSCTTSC---CSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCC-CeEEECCCCHHHHHHHHHHHHHhhcccCCc---CHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 1 12222 278999999999999999875321 1111 3567788888888 9887 444433322
Q ss_pred c---CCCChHHHHHHHHHHhhhhccCCCchhhHHhHHHhhhcCCCCcchhHHHHHhcccCCCccccHHHHHHHHHHcCCC
Q 011568 348 S---GEEEIYEWQNALNELRGRLRSLNDVDAKVLGRLEFSYHRLKDEKLRQCFLDCALYPEDFPILKDELIEYWIAEGFI 424 (483)
Q Consensus 348 ~---~~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~~~~s~fp~~~~i~~~~li~~w~aeg~i 424 (483)
. ..-+.+.+..+++.... ..+..+++.| +...+..+..++....+-.+. .......-..| .
T Consensus 252 a~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~~~l-~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~ 315 (384)
T 2qby_B 252 ASGGGIIRKEHVDKAIVDYEQ-------------ERLIEAVKAL-PFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q 315 (384)
T ss_dssp TTSSSCCCHHHHHHHHHHHHH-------------HHHHHHHHSS-CHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C
T ss_pred hcCCCccCHHHHHHHHHHHhc-------------chHHHHHHcC-CHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C
Confidence 1 12456677666665431 2356677788 776666666566511101111 11112222223 1
Q ss_pred CCcccHHHHHHHHHHHHHHHHHcCccccc
Q 011568 425 EEVKDVQAKYDRGHTILNRLVNCCLLESA 453 (483)
Q Consensus 425 ~~~~~~~~~~~~~~~~l~~L~~~sll~~~ 453 (483)
.+. .......+++.|...||++..
T Consensus 316 ~~~-----~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 316 KPL-----SYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CCC-----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCC-----CHHHHHHHHHHHHhCCCEEEE
Confidence 111 114567889999999999874
No 10
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.52 E-value=2.1e-14 Score=114.92 Aligned_cols=80 Identities=16% Similarity=0.264 Sum_probs=67.9
Q ss_pred ccHHHHHHHhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHH
Q 011568 5 GPISEIFKCLCSPICEYFEYYRKLDENMKKLDRVLRELENKKKYIEATLSRAKREQGKEPSNEVSDWLQNVRRINTKAES 84 (483)
Q Consensus 5 ~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~l~~ae~~~~~~~~~~~~~Wl~~l~~~a~~~ed 84 (483)
+++++++++|.+++.+++.++.++++++++|+++|+.|+++ |.+|+.++....+++++.|+++||+++||+||
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~-------L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED 73 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAA-------LIKIGEVPREQLDSQDKLWADEVRELSYVIED 73 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH-------HHHHHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999996555 55566532123588999999999999999999
Q ss_pred HHHHhhh
Q 011568 85 FKQEVEK 91 (483)
Q Consensus 85 ~~d~~~~ 91 (483)
++|+|.+
T Consensus 74 ~iD~f~~ 80 (115)
T 3qfl_A 74 VVDKFLV 80 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999964
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.49 E-value=1.3e-12 Score=129.19 Aligned_cols=289 Identities=15% Similarity=0.124 Sum_probs=178.0
Q ss_pred ccccccchHHHHHHHHHHhcC----CCce--EEEEEcCCCCcHHHHHHHHHhhhccCCCC-CCeEEEEEeCCCCCHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMG----DKVS--KIGVWGMGGIGKTTIMSNINNKLHEKPNK-FNDVIWVTVSQPLDLIKLQ 212 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~----~~~~--vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~ 212 (483)
..++||+ ++++.+..++.. .... .+.|+|++|+|||||++.+++.+ ... -..++|++++...+...++
T Consensus 17 ~~l~gr~--~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~ 91 (389)
T 1fnn_A 17 KRLPHRE--QQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAII 91 (389)
T ss_dssp SCCTTCH--HHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHH
T ss_pred CCCCChH--HHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHH
Confidence 5699999 778887777753 3334 89999999999999999999883 222 1246788887877888999
Q ss_pred HHHHHHhcccCCC-CCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCc--cCccccccCCCCC-C---CCcEEEEecCChhH
Q 011568 213 TEIATALKQSLPE-NEDKVSRAGRLLRMLKA-KEKFVLILDDMWEA--FPLEEVGIPEPNE-E---NGCKLVITTRSCRV 284 (483)
Q Consensus 213 ~~il~~l~~~~~~-~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~--~~~~~l~~~l~~~-~---~~s~ilvTtR~~~v 284 (483)
..++..++...+. ..+.......+...+.. +++.+||||+++.. ..+..+...+... . .+..+|++|+....
T Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 92 GEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 9999998764432 23455666666666653 36899999999754 2223332222111 1 36677777776533
Q ss_pred hhh--------cCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHc---------CCchHHHHHHHHh-
Q 011568 285 CRS--------MKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEEC---------GRLPLAIVTVAAS- 346 (483)
Q Consensus 285 ~~~--------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~---------~G~Plai~~~~~~- 346 (483)
... +....+.+++++.++..+++...+...... ....++....+++.+ +|.|..+..+...
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE-GSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT-TSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 222 222368999999999999998875421100 122467888999999 7887655444332
Q ss_pred hc-----CC--CChHHHHHHHHHHhhhhccCCCchhhHHhHHHhhhcCCCCcchhHHHHHhcccC---CCccccHHHHHH
Q 011568 347 MS-----GE--EEIYEWQNALNELRGRLRSLNDVDAKVLGRLEFSYHRLKDEKLRQCFLDCALYP---EDFPILKDELIE 416 (483)
Q Consensus 347 l~-----~~--~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~~~~s~fp---~~~~i~~~~li~ 416 (483)
.. +. -+.+....++.... ...+.-.+..| +.+.+.++..++.+. .+..+....+..
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~-------------~~~~~~~l~~l-~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 316 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVL-------------FGISEEVLIGL-PLHEKLFLLAIVRSLKISHTPYITFGDAEE 316 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHS-------------CCCCHHHHHHS-CHHHHHHHHHHHHHHHHHCSSCEEHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHh-------------hhhHHHHHHcC-CHHHHHHHHHHHHHHhhccCCCccHHHHHH
Confidence 11 11 22333333333221 11122334556 677777777676553 222455566655
Q ss_pred HHHH----cCCCCCcccHHHHHHHHHHHHHHHHHcCcccccc
Q 011568 417 YWIA----EGFIEEVKDVQAKYDRGHTILNRLVNCCLLESAE 454 (483)
Q Consensus 417 ~w~a----eg~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~ 454 (483)
.+-. .|. .+. .......+++.|...++|....
T Consensus 317 ~~~~~~~~~~~-~~~-----~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 317 SYKIVCEEYGE-RPR-----VHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHHHHHHHTTC-CCC-----CHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHcCC-CCC-----CHHHHHHHHHHHHhCCCeEEee
Confidence 4432 232 111 1135678899999999998743
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=1.9e-12 Score=127.70 Aligned_cols=292 Identities=14% Similarity=0.156 Sum_probs=175.2
Q ss_pred cccccccchHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHH
Q 011568 139 TRNLAGKRTGKIVKEIWEDLM----GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTE 214 (483)
Q Consensus 139 ~~~~vGr~~~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 214 (483)
+..++||+ ++++.+.+++. ......+.|+|++|+|||||++.+++.+......-...+|+++....+...++..
T Consensus 19 p~~~~gr~--~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 19 PDELPHRE--DQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CSCCTTCH--HHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCCChH--HHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 35699999 88999888886 4456789999999999999999999874221110224678887766677888888
Q ss_pred HHHHhcccCCC-CCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc------CccccccCCCC-CCCCcEEEEecCChhHh
Q 011568 215 IATALKQSLPE-NEDKVSRAGRLLRMLKA-KEKFVLILDDMWEAF------PLEEVGIPEPN-EENGCKLVITTRSCRVC 285 (483)
Q Consensus 215 il~~l~~~~~~-~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~------~~~~l~~~l~~-~~~~s~ilvTtR~~~v~ 285 (483)
++.+++...+. ..+.......+...+.. +++.+||||+++... .+..+...+.. ...+..+|+||+.....
T Consensus 97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 97 LLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp HTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 88887654332 23455556667777664 248999999997421 12222111111 23355677777765332
Q ss_pred --------hhcCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcC---CchHHHH-HHHHhhc-----
Q 011568 286 --------RSMKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECG---RLPLAIV-TVAASMS----- 348 (483)
Q Consensus 286 --------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~Plai~-~~~~~l~----- 348 (483)
..+....+.+++++.++..+++...+..... .....++....+++.++ |.|..+. ++.....
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~ 255 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK-PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERM 255 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC-SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 2222246899999999999999886432110 01124567788888888 9998443 3332221
Q ss_pred C--CCChHHHHHHHHHHhhhhccCCCchhhHHhHHHhhhcCCCCcchhHHHHHhcccCC-C-ccccHHHHHHHH----HH
Q 011568 349 G--EEEIYEWQNALNELRGRLRSLNDVDAKVLGRLEFSYHRLKDEKLRQCFLDCALYPE-D-FPILKDELIEYW----IA 420 (483)
Q Consensus 349 ~--~~~~~~w~~~l~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~c~~~~s~fp~-~-~~i~~~~li~~w----~a 420 (483)
+ .-+.+.+..+++... ...+.-++..+ +...+..+..++.+.+ + ..+....+.+.. -.
T Consensus 256 ~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l-~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 256 KDTKVKEEYVYMAKEEIE-------------RDRVRDIILTL-PFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp TCSSCCHHHHHHHHHHHH-------------HHHHHHHHHTS-CHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHh-------------hchHHHHHHcC-CHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 124555555554432 12455566778 7666666665653221 1 223343332221 11
Q ss_pred cCCCCCcccHHHHHHHHHHHHHHHHHcCccccc
Q 011568 421 EGFIEEVKDVQAKYDRGHTILNRLVNCCLLESA 453 (483)
Q Consensus 421 eg~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~ 453 (483)
.|. .+. .......+++.|...|+++..
T Consensus 322 ~g~-~~~-----~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 322 LGV-EAV-----TQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HTC-CCC-----CHHHHHHHHHHHHHHTSEEEE
T ss_pred cCC-CCC-----CHHHHHHHHHHHHhCCCEEEE
Confidence 231 111 113466789999999999764
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.34 E-value=1.1e-11 Score=113.77 Aligned_cols=194 Identities=11% Similarity=0.136 Sum_probs=113.0
Q ss_pred ccccccchHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDK-VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
..++|++ +.++.+..++.... .+.+.|+|++|+||||||+.+++.+... ..+.. ..+ ..... ...+...
T Consensus 23 ~~~~g~~--~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~-~~~~~---~~~---~~~~~-~~~~~~~ 92 (250)
T 1njg_A 23 ADVVGQE--HVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE-TGITA---TPC---GVCDN-CREIEQG 92 (250)
T ss_dssp GGCCSCH--HHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCT-TCSCS---SCC---SCSHH-HHHHHTT
T ss_pred HHHhCcH--HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC-CCCCC---CCC---cccHH-HHHHhcc
Confidence 4599998 78888888886653 3589999999999999999999874211 11100 000 00000 0000000
Q ss_pred -----hcccCCCCCCHHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEEecCChhHh-h
Q 011568 219 -----LKQSLPENEDKVSRAGRLLRMLK----AKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVITTRSCRVC-R 286 (483)
Q Consensus 219 -----l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilvTtR~~~v~-~ 286 (483)
+..... ..........+.+.+. .+++.+|||||++.. ..+..+...+.....+..+|+||+..... .
T Consensus 93 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 93 RFVDLIEIDAA-SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp CCSSEEEEETT-CGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred CCcceEEecCc-ccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCH
Confidence 000000 0011111222222221 136899999999753 33444433333334567888888654321 1
Q ss_pred h--cCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHhh
Q 011568 287 S--MKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAASM 347 (483)
Q Consensus 287 ~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 347 (483)
. .....+.+++++.++..+++...+....... .++....|++.|+|+|..+..+...+
T Consensus 172 ~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 172 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 1124689999999999999998764332222 45678899999999999888776543
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.33 E-value=1.7e-11 Score=111.04 Aligned_cols=182 Identities=10% Similarity=0.182 Sum_probs=112.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEeCCCCCHHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFN-DVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
..++|++ +.++.+..++.....+.+.|+|++|+|||+||+.+++.+.. ..+. ..+.++.+...+...+...+ ..
T Consensus 17 ~~~~g~~--~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 91 (226)
T 2chg_A 17 DEVVGQD--EVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG--ENWRDNFIEMNASDERGIDVVRHKI-KE 91 (226)
T ss_dssp GGCCSCH--HHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHG--GGGGGGEEEEETTCTTCHHHHHHHH-HH
T ss_pred HHHcCcH--HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhc--cccccceEEeccccccChHHHHHHH-HH
Confidence 4589998 78899999998776666999999999999999999987421 1122 23344444333332222221 11
Q ss_pred hcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEEecCChhHh-hh--cCCceE
Q 011568 219 LKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVITTRSCRVC-RS--MKCKQV 293 (483)
Q Consensus 219 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilvTtR~~~v~-~~--~~~~~~ 293 (483)
+..... ....++.+|||||++.. .....+...+.....+..+|+||+..... .. .....+
T Consensus 92 ~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i 156 (226)
T 2chg_A 92 FARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (226)
T ss_dssp HHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCcee
Confidence 111000 11137899999999754 22333332222234567888888764311 11 112368
Q ss_pred eccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHH
Q 011568 294 EIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVA 344 (483)
Q Consensus 294 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 344 (483)
.+.+++.++..+++...+....... .++....|++.++|+|..+..+.
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 157 RFKPVPKEAMKKRLLEICEKEGVKI---TEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999988764322222 45678889999999998654433
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.26 E-value=2.4e-11 Score=117.00 Aligned_cols=172 Identities=13% Similarity=0.119 Sum_probs=103.2
Q ss_pred ccccccchHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLM-----GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTE 214 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 214 (483)
..++|++ ..+..+..++. ......+.|+|++|+|||+||+.+++.+ .. ..++++.+......++..
T Consensus 12 ~~~ig~~--~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~---~~~~~~~~~~~~~~~l~~- 82 (324)
T 1hqc_A 12 DEYIGQE--RLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GV---NLRVTSGPAIEKPGDLAA- 82 (324)
T ss_dssp TTCCSCH--HHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TC---CEEEECTTTCCSHHHHHH-
T ss_pred HHhhCHH--HHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEeccccCChHHHHH-
Confidence 4599998 66666666653 2344678999999999999999999883 11 234555443322222211
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHhc--CCeEEEEEeCCCCcc--CccccccCCC---------C---------CCCC
Q 011568 215 IATALKQSLPENEDKVSRAGRLLRMLKA--KEKFVLILDDMWEAF--PLEEVGIPEP---------N---------EENG 272 (483)
Q Consensus 215 il~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~~LlVlDdv~~~~--~~~~l~~~l~---------~---------~~~~ 272 (483)
.+.. .++.+|+||+++... ....+...+. . ...+
T Consensus 83 ------------------------~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 83 ------------------------ILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ------------------------HHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ------------------------HHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 1111 256688888887532 1111100000 0 0123
Q ss_pred cEEEEecCChh-Hhhhc--CC-ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHHhh
Q 011568 273 CKLVITTRSCR-VCRSM--KC-KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAASM 347 (483)
Q Consensus 273 s~ilvTtR~~~-v~~~~--~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l 347 (483)
..+|.||.... +.... .. ..+.+.+++.++...++...+....... .++....+++.++|+|..+..+...+
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI---TEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 45666665322 21111 11 3589999999999999988765433222 46788999999999998887666544
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.13 E-value=2.4e-10 Score=109.75 Aligned_cols=185 Identities=13% Similarity=0.182 Sum_probs=113.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEeCCCCCHHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFN-DVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
..++|++ ..++.+..++..+..+.+.|+|++|+|||++|+.+++.+.. ..+. ..++++.+...+. +.+++++..
T Consensus 21 ~~~~g~~--~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~--~~~~~~~~~~~~~~~~~~-~~i~~~~~~ 95 (323)
T 1sxj_B 21 SDIVGNK--ETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG--RSYADGVLELNASDDRGI-DVVRNQIKH 95 (323)
T ss_dssp GGCCSCT--HHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHG--GGHHHHEEEECTTSCCSH-HHHHTHHHH
T ss_pred HHHHCCH--HHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC--CcccCCEEEecCccccCh-HHHHHHHHH
Confidence 4599999 78899999998876656999999999999999999988421 1111 2344444333232 222233332
Q ss_pred hcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEEecCChhH-hhh--cCCceE
Q 011568 219 LKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVITTRSCRV-CRS--MKCKQV 293 (483)
Q Consensus 219 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilvTtR~~~v-~~~--~~~~~~ 293 (483)
+..... .+..+++.++|+||++.. .....+...+.....++.+|+||....- ... ..+..+
T Consensus 96 ~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i 161 (323)
T 1sxj_B 96 FAQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAIL 161 (323)
T ss_dssp HHHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEE
Confidence 221000 010225899999999853 2233332222222456778887765321 111 122468
Q ss_pred eccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchH-HHHHHHHh
Q 011568 294 EIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPL-AIVTVAAS 346 (483)
Q Consensus 294 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~~~ 346 (483)
.+.+++.++..+++...+....... .++....|++.|+|.|. ++..+...
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 162 RYSKLSDEDVLKRLLQIIKLEDVKY---TNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999988654322222 45678899999999995 45555443
No 17
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.04 E-value=3.2e-09 Score=100.46 Aligned_cols=170 Identities=10% Similarity=0.123 Sum_probs=105.1
Q ss_pred cccccchHHHHHHHHHHh----cCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCC--CCC--eEEEEEeCCCCCHHHHH
Q 011568 141 NLAGKRTGKIVKEIWEDL----MGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPN--KFN--DVIWVTVSQPLDLIKLQ 212 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--~f~--~~~wv~~~~~~~~~~~~ 212 (483)
.+.||+ ++.+.|...| .++..+.+.|+|++|+|||++++.+++.+..... ..+ ..+.+++....+...++
T Consensus 21 ~L~~Re--~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQV--EDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHH--HHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 488998 6777766555 4567789999999999999999999998643221 111 35677777778889999
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHH--hcCCeEEEEEeCCCCccCccccccCC--C-CCCCCcEEEEec-CCh--h-
Q 011568 213 TEIATALKQSLPENEDKVSRAGRLLRML--KAKEKFVLILDDMWEAFPLEEVGIPE--P-NEENGCKLVITT-RSC--R- 283 (483)
Q Consensus 213 ~~il~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~~LlVlDdv~~~~~~~~l~~~l--~-~~~~~s~ilvTt-R~~--~- 283 (483)
..|++++................+...+ ..+++++++||+++....-+.+...+ + .......||.++ ..+ .
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 9999999653221222233344444443 22378999999998654222221111 1 111112233333 321 1
Q ss_pred -----HhhhcCCceEeccCCChHHHHHHHHHhhC
Q 011568 284 -----VCRSMKCKQVEIELLSKKEALNLFIDKVG 312 (483)
Q Consensus 284 -----v~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 312 (483)
+...+....+.+.+++.+|..+++.+++.
T Consensus 179 ~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 179 QINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 12344445689999999999999988764
No 18
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=1.5e-09 Score=104.31 Aligned_cols=183 Identities=10% Similarity=0.138 Sum_probs=110.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEeCCCCCHHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFN-DVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
..++|++ +.++.+..++..+..+.+.|+|++|+|||++|+.+++.+... .+. ..+.++.+..... +.+...+..
T Consensus 25 ~~~~g~~--~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~ 99 (327)
T 1iqp_A 25 DDIVGQE--HIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE--NWRHNFLELNASDERGI-NVIREKVKE 99 (327)
T ss_dssp TTCCSCH--HHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGG--GHHHHEEEEETTCHHHH-HTTHHHHHH
T ss_pred HHhhCCH--HHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCC--cccCceEEeeccccCch-HHHHHHHHH
Confidence 3589998 788888888887766669999999999999999999874211 111 1333333221111 111111111
Q ss_pred hcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEEecCChhH-hhh--cCCceE
Q 011568 219 LKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVITTRSCRV-CRS--MKCKQV 293 (483)
Q Consensus 219 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilvTtR~~~v-~~~--~~~~~~ 293 (483)
+.... .+..+++.++|+|+++.. .....+...+.....++++|+||....- ... ..+..+
T Consensus 100 ~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~ 164 (327)
T 1iqp_A 100 FARTK---------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 164 (327)
T ss_dssp HHHSC---------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred HHhhC---------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEE
Confidence 10000 011126889999999753 2233332222222456778888865421 111 112358
Q ss_pred eccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHHH
Q 011568 294 EIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVAA 345 (483)
Q Consensus 294 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 345 (483)
.+.+++.++...++...+....... .++....|++.++|.|..+..+..
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 165 RFRPLRDEDIAKRLRYIAENEGLEL---TEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCEE---CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 9999999999999988764432222 456788999999999986554443
No 19
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.88 E-value=2e-08 Score=96.06 Aligned_cols=179 Identities=9% Similarity=0.161 Sum_probs=110.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEeCCCCCHHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFN-DVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
..++|++ ..++.+..++..+..+.+.|+|++|+|||++|+.+++.+. ...+. ..+.++.+......
T Consensus 17 ~~~~g~~--~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~--------- 83 (319)
T 2chq_A 17 DEVVGQD--EVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGID--------- 83 (319)
T ss_dssp GGSCSCH--HHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTCTT---------
T ss_pred HHHhCCH--HHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccChH---------
Confidence 4589998 7888888888877666699999999999999999998742 11211 12334433321110
Q ss_pred hcccCCCCCCHHHHHHHHHHH--HhcCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEEecCChh-Hhhh--cCCc
Q 011568 219 LKQSLPENEDKVSRAGRLLRM--LKAKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVITTRSCR-VCRS--MKCK 291 (483)
Q Consensus 219 l~~~~~~~~~~~~~~~~l~~~--l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilvTtR~~~-v~~~--~~~~ 291 (483)
........+... +..+++.++|+|+++.. .....+...+.....++.+|+||.... +... ..+.
T Consensus 84 ---------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 84 ---------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp ---------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred ---------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 001111111100 11136889999999753 223334333333345677777776533 1111 1224
Q ss_pred eEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHH
Q 011568 292 QVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTV 343 (483)
Q Consensus 292 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 343 (483)
.+.+.+++.++...++...+....... .++....+++.++|.|..+...
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~i---~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKI---TEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCCCB---CHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 689999999999999988765433222 4667888999999999865443
No 20
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.84 E-value=2.3e-08 Score=98.02 Aligned_cols=191 Identities=12% Similarity=0.166 Sum_probs=106.8
Q ss_pred ccccccchHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDK-VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
..++|++ +.++.+..++..+. ...+.|+|++|+||||+|+.+++.+.... .+. ...+........+...
T Consensus 16 ~~~vg~~--~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~-------~~~~~~~~~~~~~~~~ 85 (373)
T 1jr3_A 16 ADVVGQE--HVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GIT-------ATPCGVCDNCREIEQG 85 (373)
T ss_dssp TTSCSCH--HHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTT-CSC-------SSCCSSSHHHHHHHTS
T ss_pred hhccCcH--HHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCC-CCC-------CCCCcccHHHHHHhcc
Confidence 3599998 78888888886654 45789999999999999999998742111 100 0000000011111100
Q ss_pred -----hcccCCCCCCHHHHHHHHHHHHh----cCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEEecCChh-Hhh
Q 011568 219 -----LKQSLPENEDKVSRAGRLLRMLK----AKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVITTRSCR-VCR 286 (483)
Q Consensus 219 -----l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilvTtR~~~-v~~ 286 (483)
+......... ......+...+. .+++.++|+||++.. .....+...+.....+..+|++|.... +..
T Consensus 86 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 164 (373)
T 1jr3_A 86 RFVDLIEIDAASRTK-VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (373)
T ss_dssp CCSSCEEEETTCSCC-SSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCH
T ss_pred CCCceEEecccccCC-HHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcH
Confidence 0000000000 011122333322 136789999999743 223333222222234566777765432 111
Q ss_pred h--cCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHH
Q 011568 287 S--MKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVA 344 (483)
Q Consensus 287 ~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 344 (483)
. ..+..+.+.+++.++...++...+....... .++....|++.++|.|..+..+.
T Consensus 165 ~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~---~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 165 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHCCCCHHHHHHHH
Confidence 1 1235689999999999999987653322222 45677889999999998776554
No 21
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.73 E-value=9.5e-08 Score=92.78 Aligned_cols=191 Identities=10% Similarity=0.151 Sum_probs=109.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccC-CCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEK-PNKFNDVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
..++|++ +.++.+..++..+..+.+.|+|++|+||||+|+.+++.+... ...+ ....++.+....... +.+.+..
T Consensus 37 ~~i~g~~--~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~ 112 (353)
T 1sxj_D 37 DEVTAQD--HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISI-VREKVKN 112 (353)
T ss_dssp TTCCSCC--TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHH-HTTHHHH
T ss_pred HHhhCCH--HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHH-HHHHHHH
Confidence 4589998 788899999887765559999999999999999998874210 0111 233344443323322 2222222
Q ss_pred hccc-CCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEEEecCChh-Hhhhc--CCce
Q 011568 219 LKQS-LPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLVITTRSCR-VCRSM--KCKQ 292 (483)
Q Consensus 219 l~~~-~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ilvTtR~~~-v~~~~--~~~~ 292 (483)
+... ....... .......+++-+|++|+++... ....+...+.......++|++|.... +.... ....
T Consensus 113 ~~~~~~~~~~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~ 186 (353)
T 1sxj_D 113 FARLTVSKPSKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSK 186 (353)
T ss_dssp HHHSCCCCCCTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEE
T ss_pred Hhhhcccccchh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCce
Confidence 2211 1100000 0011112256799999987432 12222222222233556776664432 11111 1235
Q ss_pred EeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHH
Q 011568 293 VEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTV 343 (483)
Q Consensus 293 ~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 343 (483)
+.+.+++.++....+...+....... .++....|++.++|.|..+..+
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~~i---~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENVKC---DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHTSSCHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 89999999999999988764432222 4678899999999999865443
No 22
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.71 E-value=1.6e-08 Score=88.76 Aligned_cols=46 Identities=17% Similarity=0.337 Sum_probs=40.8
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..++|++ +.++.+.+++.....+.+.|+|++|+|||+||+.+++.+
T Consensus 22 ~~~~g~~--~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRD--EEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCH--HHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccch--HHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3589998 789999999988777788999999999999999999885
No 23
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.64 E-value=2.4e-08 Score=91.27 Aligned_cols=173 Identities=14% Similarity=0.162 Sum_probs=101.5
Q ss_pred ccccccc-hHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 011568 140 RNLAGKR-TGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~-~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
.+++|.. ....++.+..++.....+.+.|+|++|+||||||+.+++.+... ...+.|++++.....
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~---~~~~~~~~~~~~~~~---------- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL---ERRSFYIPLGIHASI---------- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEGGGGGGS----------
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHH----------
Confidence 3477632 12456666666666567889999999999999999999884322 234667775431100
Q ss_pred hcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----ccccccCCCC-CCCC-cEEEEecCChh---------
Q 011568 219 LKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP----LEEVGIPEPN-EENG-CKLVITTRSCR--------- 283 (483)
Q Consensus 219 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~----~~~l~~~l~~-~~~~-s~ilvTtR~~~--------- 283 (483)
+. ...+.+ . ++.+|||||++.... ...+...+.. ...+ ..+|+||+...
T Consensus 95 ~~--------------~~~~~~-~-~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 95 ST--------------ALLEGL-E-QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp CG--------------GGGTTG-G-GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHH
T ss_pred HH--------------HHHHhc-c-CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhh
Confidence 00 000111 2 567999999974322 1212111100 0112 24777776322
Q ss_pred HhhhcC-CceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHH
Q 011568 284 VCRSMK-CKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVA 344 (483)
Q Consensus 284 v~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 344 (483)
+...+. ...+.+.+++.++..+++...+....... .++....+++.++|.+-.+..+.
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL---PEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC---CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHccCCHHHHHHHH
Confidence 111111 14589999999999999988764322222 46778889999999887665443
No 24
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.63 E-value=1.1e-06 Score=84.74 Aligned_cols=168 Identities=15% Similarity=0.102 Sum_probs=98.0
Q ss_pred ccccccchHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLM-----GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTE 214 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 214 (483)
..++|++ ..++.+..++. ......+.|+|++|+|||+||+.+++. .... .+.++.+.......
T Consensus 29 ~~iiG~~--~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~---~~~~---~~~~~~~~~~~~~~---- 96 (338)
T 3pfi_A 29 DGYIGQE--SIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE---MSAN---IKTTAAPMIEKSGD---- 96 (338)
T ss_dssp GGCCSCH--HHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH---TTCC---EEEEEGGGCCSHHH----
T ss_pred HHhCChH--HHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH---hCCC---eEEecchhccchhH----
Confidence 4599998 67777776664 234567899999999999999999887 2222 23333322211111
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc--CccccccCC------------------CCCCCCc
Q 011568 215 IATALKQSLPENEDKVSRAGRLLRMLKA-KEKFVLILDDMWEAF--PLEEVGIPE------------------PNEENGC 273 (483)
Q Consensus 215 il~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~--~~~~l~~~l------------------~~~~~~s 273 (483)
+...+.. .+..+|+||+++... ....+...+ ....++.
T Consensus 97 ---------------------~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 97 ---------------------LAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp ---------------------HHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred ---------------------HHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 1111111 256788899887431 111110000 0011134
Q ss_pred EEEEecCChh-----HhhhcCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHH
Q 011568 274 KLVITTRSCR-----VCRSMKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVA 344 (483)
Q Consensus 274 ~ilvTtR~~~-----v~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 344 (483)
.+|.+|.... +...+ ...+.+.+++.++...++...+....... .++....|++.+.|+|-.+..+.
T Consensus 156 ~~i~atn~~~~l~~~L~~R~-~~~i~l~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRF-GMQFRLEFYKDSELALILQKAALKLNKTC---EEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTC-SEEEECCCCCHHHHHHHHHHHHHHTTCEE---CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhc-CEEeeCCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHCcCHHHHHHHH
Confidence 5666665422 12221 14589999999999999987764332222 45678889999999996554443
No 25
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.63 E-value=2.8e-07 Score=91.96 Aligned_cols=174 Identities=13% Similarity=0.130 Sum_probs=101.7
Q ss_pred ccccccchHHHH---HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCC-CCHHHHHHHH
Q 011568 140 RNLAGKRTGKIV---KEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQP-LDLIKLQTEI 215 (483)
Q Consensus 140 ~~~vGr~~~~~~---~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i 215 (483)
..++|.+ ..+ ..+...+..+..+.+.|+|++|+||||||+.+++.+ ... ++.++.. ....+ ++.+
T Consensus 26 ~~ivGq~--~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~-----f~~l~a~~~~~~~-ir~~ 94 (447)
T 3pvs_A 26 AQYIGQQ--HLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NAD-----VERISAVTSGVKE-IREA 94 (447)
T ss_dssp TTCCSCH--HHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCE-----EEEEETTTCCHHH-HHHH
T ss_pred HHhCCcH--HHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCC-----eEEEEeccCCHHH-HHHH
Confidence 4588987 555 667777777777889999999999999999999882 222 2232221 12221 1222
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEE-EecCChhH--hh--hc
Q 011568 216 ATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLV-ITTRSCRV--CR--SM 288 (483)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~il-vTtR~~~v--~~--~~ 288 (483)
+. ........+++.+|+||+++.. ...+.+...+.. + ...+| .||.+... .. ..
T Consensus 95 ~~-----------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 95 IE-----------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp HH-----------------HHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHT
T ss_pred HH-----------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhC
Confidence 11 1111111237899999999853 223333322222 2 23333 35554321 11 11
Q ss_pred CCceEeccCCChHHHHHHHHHhhCCCC----CCCCCcchHHHHHHHHHcCCchHHHHHH
Q 011568 289 KCKQVEIELLSKKEALNLFIDKVGSSI----LQVPTLNEGIINEVVEECGRLPLAIVTV 343 (483)
Q Consensus 289 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~----~~~~~~~~~~~~~i~~~~~G~Plai~~~ 343 (483)
....+.+.+++.++...++.+.+.... .......++....|++.++|.+-.+..+
T Consensus 156 R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 224588999999999999988765421 0111225677888999999988755433
No 26
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.59 E-value=3.1e-07 Score=89.18 Aligned_cols=193 Identities=11% Similarity=0.091 Sum_probs=103.5
Q ss_pred ccccccchHHHHHHHHHHh-cCCCceEEEEEcCCCCcHHHHHHHHHhhhccCC-CC--CC--------------------
Q 011568 140 RNLAGKRTGKIVKEIWEDL-MGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKP-NK--FN-------------------- 195 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~--f~-------------------- 195 (483)
..++|.+ ..++.+..++ ..+..+.+.|+|++|+||||+++.++..+.... +. ++
T Consensus 14 ~~~vg~~--~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 14 NALSHNE--ELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp GGCCSCH--HHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred HHhcCCH--HHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 4589988 7788888888 665555599999999999999999988531111 00 00
Q ss_pred eEEEEEeCCC-CCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccccCCCCCCCC
Q 011568 196 DVIWVTVSQP-LDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF--PLEEVGIPEPNEENG 272 (483)
Q Consensus 196 ~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~ 272 (483)
..+.+..+.. .......++++..+.....-. ... .+. .+.. ++-++|||++.... ....+...+.....+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~-~ls-~l~~-~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQVD----FQD-SKD-GLAH-RYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhcccc----ccc-ccc-ccCC-CCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 0111111110 000012233333332211000 000 000 0223 67799999997531 112222222111235
Q ss_pred cEEEEecCCh-hHhhh--cCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcc-hHHHHHHHHHcCCchHHHHHHH
Q 011568 273 CKLVITTRSC-RVCRS--MKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLN-EGIINEVVEECGRLPLAIVTVA 344 (483)
Q Consensus 273 s~ilvTtR~~-~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~-~~~~~~i~~~~~G~Plai~~~~ 344 (483)
..+|++|... .+... ..+..+.+.+++.++...++...+....... . ++.+..|++.++|.+..+..+.
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQL---ETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEE---CCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCC---CcHHHHHHHHHHcCCCHHHHHHHH
Confidence 6777777542 22111 1225689999999999999987764322111 3 4678889999999987655444
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.59 E-value=2.2e-07 Score=87.30 Aligned_cols=177 Identities=15% Similarity=0.172 Sum_probs=99.8
Q ss_pred cccccccchHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCC
Q 011568 139 TRNLAGKRTGKIVKEIWEDLMG-------------DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQP 205 (483)
Q Consensus 139 ~~~~vGr~~~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 205 (483)
...++|.+ +.++.+...+.. .....+.|+|++|+|||+||+.+++.+ .. ..+.++.+.-
T Consensus 16 ~~~i~G~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~---~~~~v~~~~~ 87 (285)
T 3h4m_A 16 YEDIGGLE--KQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NA---TFIRVVGSEL 87 (285)
T ss_dssp GGGSCSCH--HHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TC---EEEEEEGGGG
T ss_pred HHHhcCHH--HHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CC---CEEEEehHHH
Confidence 34589988 677777666522 345679999999999999999999882 21 2233333221
Q ss_pred CCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc----------------CccccccCCC--
Q 011568 206 LDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF----------------PLEEVGIPEP-- 267 (483)
Q Consensus 206 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~----------------~~~~l~~~l~-- 267 (483)
.+ . ...........+........+.+|+||+++... .+..+...+.
T Consensus 88 ~~--------------~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 88 VK--------------K--FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp CC--------------C--STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred HH--------------h--ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 10 0 011122233333343333377899999996421 0111111110
Q ss_pred CCCCCcEEEEecCChhHhh-----hcCC-ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCC-chHHH
Q 011568 268 NEENGCKLVITTRSCRVCR-----SMKC-KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGR-LPLAI 340 (483)
Q Consensus 268 ~~~~~s~ilvTtR~~~v~~-----~~~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai 340 (483)
....+..||.||....... .... ..+.++..+.++..++|........... ......++..+.| .|-.+
T Consensus 152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~----~~~~~~l~~~~~g~~~~~i 227 (285)
T 3h4m_A 152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE----DVNLEEIAKMTEGCVGAEL 227 (285)
T ss_dssp CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT----TCCHHHHHHHCTTCCHHHH
T ss_pred CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC----cCCHHHHHHHcCCCCHHHH
Confidence 1233566777776532211 1011 2489999999999999998875542221 1125677888877 45444
Q ss_pred HHH
Q 011568 341 VTV 343 (483)
Q Consensus 341 ~~~ 343 (483)
..+
T Consensus 228 ~~l 230 (285)
T 3h4m_A 228 KAI 230 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 28
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.58 E-value=5.8e-07 Score=89.78 Aligned_cols=183 Identities=14% Similarity=0.183 Sum_probs=106.1
Q ss_pred cccc-ccchHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 011568 140 RNLA-GKRTGKIVKEIWEDLMGDK-VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIAT 217 (483)
Q Consensus 140 ~~~v-Gr~~~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 217 (483)
.+|+ |.........+........ ...+.|+|++|+||||||+.+++.+....... .+++++.. .+...+..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~-~v~~v~~~------~~~~~~~~ 177 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDL-RVMYITSE------KFLNDLVD 177 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSS-CEEEEEHH------HHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCC-eEEEeeHH------HHHHHHHH
Confidence 3466 6543233444445554443 67899999999999999999998842211111 24555533 34444544
Q ss_pred HhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----ccccccCCCC-CCCCcEEEEecCChh---------
Q 011568 218 ALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP----LEEVGIPEPN-EENGCKLVITTRSCR--------- 283 (483)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~----~~~l~~~l~~-~~~~s~ilvTtR~~~--------- 283 (483)
.+... . ...+...+.. ++.+|+|||++.... .+.+...+.. ...|..||+||.+..
T Consensus 178 ~~~~~-----~----~~~~~~~~~~-~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 178 SMKEG-----K----LNEFREKYRK-KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HHHTT-----C----HHHHHHHHTT-TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred HHHcc-----c----HHHHHHHhcC-CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 44321 1 1223344443 577999999974332 1222222110 134667888887521
Q ss_pred HhhhcC-CceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHH
Q 011568 284 VCRSMK-CKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVT 342 (483)
Q Consensus 284 v~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 342 (483)
+...+. ...+.+.+++.++...++...+....... .++....|++.++|.+--+.-
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i---~~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGEL---PEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCC---CTTHHHHHHHHCCSCHHHHHH
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHHH
Confidence 222222 13578999999999999988764322122 335678899999999875543
No 29
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.53 E-value=6.6e-07 Score=87.37 Aligned_cols=195 Identities=12% Similarity=0.084 Sum_probs=102.5
Q ss_pred cccccccchH-HHHHHHHHHhcCCCc--eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe----CCCCCHHHH
Q 011568 139 TRNLAGKRTG-KIVKEIWEDLMGDKV--SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTV----SQPLDLIKL 211 (483)
Q Consensus 139 ~~~~vGr~~~-~~~~~l~~~L~~~~~--~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~----~~~~~~~~~ 211 (483)
...++|++.. +.+..+...+..... +.+.|+|++|+|||+||+.+++.+. ...+ .+.++. +......+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~---~~~~-~~~~~~~~~~~~~~~~~~~ 118 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG---PDTP-FTAIAGSEIFSLEMSKTEA 118 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC---SSCC-EEEEEGGGGSCSSSCHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc---ccCC-cccccchhhhhcccchhHH
Confidence 3469999822 223345566655543 5899999999999999999999842 2111 122221 223344444
Q ss_pred HHHHHHHhcc-cC---------------------------CC--CCCHHHHHHHHHHHH----hcCC----eEEEEEeCC
Q 011568 212 QTEIATALKQ-SL---------------------------PE--NEDKVSRAGRLLRML----KAKE----KFVLILDDM 253 (483)
Q Consensus 212 ~~~il~~l~~-~~---------------------------~~--~~~~~~~~~~l~~~l----~~~~----~~LlVlDdv 253 (483)
+.+.+..... .. .. ..........+.... ..++ +.+|+||++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi 198 (368)
T 3uk6_A 119 LTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEV 198 (368)
T ss_dssp HHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESG
T ss_pred HHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhc
Confidence 4444443111 00 00 000112222221111 1123 459999999
Q ss_pred CCc--cCccccccCCCCCCCCcEEEEecCC-----------------hhHhhhcCCceEeccCCChHHHHHHHHHhhCCC
Q 011568 254 WEA--FPLEEVGIPEPNEENGCKLVITTRS-----------------CRVCRSMKCKQVEIELLSKKEALNLFIDKVGSS 314 (483)
Q Consensus 254 ~~~--~~~~~l~~~l~~~~~~s~ilvTtR~-----------------~~v~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 314 (483)
+.. .....+...+...... .++++|.. ..+... ...+.+.+++.++..+++...+...
T Consensus 199 ~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR--~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 199 HMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDR--LLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp GGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTT--EEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred cccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhh--ccEEEecCCCHHHHHHHHHHHHHHc
Confidence 753 2222222222221222 34434321 112222 2348999999999999999776543
Q ss_pred CCCCCCcchHHHHHHHHHcC-CchHHHHHH
Q 011568 315 ILQVPTLNEGIINEVVEECG-RLPLAIVTV 343 (483)
Q Consensus 315 ~~~~~~~~~~~~~~i~~~~~-G~Plai~~~ 343 (483)
.... .++....|++.+. |.|..+..+
T Consensus 276 ~~~~---~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 276 DVEM---SEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp TCCB---CHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCCC---CHHHHHHHHHHhcCCCHHHHHHH
Confidence 2222 5677888999997 777655443
No 30
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.52 E-value=2.8e-06 Score=79.19 Aligned_cols=172 Identities=11% Similarity=0.138 Sum_probs=91.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHH---HHHHHH
Q 011568 160 GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKV---SRAGRL 236 (483)
Q Consensus 160 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~---~~~~~l 236 (483)
......+.|+|++|+|||+||+.+++.. . .+ .+.++.+... + ..... .....+
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~---~--~~-~~~i~~~~~~------------~------g~~~~~~~~~~~~~ 116 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES---N--FP-FIKICSPDKM------------I------GFSETAKCQAMKKI 116 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH---T--CS-EEEEECGGGC------------T------TCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh---C--CC-EEEEeCHHHh------------c------CCchHHHHHHHHHH
Confidence 4456789999999999999999999872 1 22 2223322110 0 01111 111222
Q ss_pred HHHHhcCCeEEEEEeCCCCcc------------CccccccCCC---CCCCCcEEEEecCChhHhhh---cC--CceEecc
Q 011568 237 LRMLKAKEKFVLILDDMWEAF------------PLEEVGIPEP---NEENGCKLVITTRSCRVCRS---MK--CKQVEIE 296 (483)
Q Consensus 237 ~~~l~~~~~~LlVlDdv~~~~------------~~~~l~~~l~---~~~~~s~ilvTtR~~~v~~~---~~--~~~~~l~ 296 (483)
.......++.+|+||+++... .+..+...+. .......||.||........ .+ ...+.++
T Consensus 117 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p 196 (272)
T 1d2n_A 117 FDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVP 196 (272)
T ss_dssp HHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECC
T ss_pred HHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCC
Confidence 222222378999999986420 0111111111 12233446667766543322 11 2348899
Q ss_pred CCCh-HHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCC------chHHHHHHHHhhcCCCChHHHHHHHHHHh
Q 011568 297 LLSK-KEALNLFIDKVGSSILQVPTLNEGIINEVVEECGR------LPLAIVTVAASMSGEEEIYEWQNALNELR 364 (483)
Q Consensus 297 ~L~~-~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G------~Plai~~~~~~l~~~~~~~~w~~~l~~l~ 364 (483)
+++. ++...++..... . .++....|++.+.| .+-++..+-.... ......+..++..+.
T Consensus 197 ~l~~r~~i~~i~~~~~~-----~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~-~~~~~~~~~~~~~l~ 262 (272)
T 1d2n_A 197 NIATGEQLLEALELLGN-----F---KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ-MDPEYRVRKFLALLR 262 (272)
T ss_dssp CEEEHHHHHHHHHHHTC-----S---CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT-SCGGGHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhcCC-----C---CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh-hchHHHHHHHHHHHH
Confidence 9988 777777665321 1 35667888989888 3444444433322 233455666555544
No 31
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.49 E-value=7.8e-07 Score=90.84 Aligned_cols=187 Identities=12% Similarity=0.126 Sum_probs=103.5
Q ss_pred ccccccchHHHHHHHHHHhcC-----------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe
Q 011568 140 RNLAGKRTGKIVKEIWEDLMG-----------------DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTV 202 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~-----------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 202 (483)
..++|++ +.++.+..++.. +..+.+.|+|++|+|||++|+.+++.+ .+ .++.+++
T Consensus 39 ~dliG~~--~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-----~~-~~i~in~ 110 (516)
T 1sxj_A 39 QQVCGNK--GSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-----GY-DILEQNA 110 (516)
T ss_dssp GGCCSCH--HHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----TC-EEEEECT
T ss_pred HHhcCCH--HHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-----CC-CEEEEeC
Confidence 4699998 788888888864 134789999999999999999999983 12 2445555
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH-HhcCCeEEEEEeCCCCccC-----ccccccCCCCCCCCcEEE
Q 011568 203 SQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRM-LKAKEKFVLILDDMWEAFP-----LEEVGIPEPNEENGCKLV 276 (483)
Q Consensus 203 ~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~~LlVlDdv~~~~~-----~~~l~~~l~~~~~~s~il 276 (483)
+...+.. ++...+........ .. ......... ....++.+|+||+++.... +..+...+.. . +..||
T Consensus 111 s~~~~~~-~~~~~i~~~~~~~~-~~---~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-~-~~~iI 183 (516)
T 1sxj_A 111 SDVRSKT-LLNAGVKNALDNMS-VV---GYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-T-STPLI 183 (516)
T ss_dssp TSCCCHH-HHHHTGGGGTTBCC-ST---TTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-C-SSCEE
T ss_pred CCcchHH-HHHHHHHHHhcccc-HH---HHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-c-CCCEE
Confidence 5443332 22222222111100 00 000000000 1123789999999975321 1222211111 1 22344
Q ss_pred EecCChh---HhhhcC-CceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCch-HHHHHHH
Q 011568 277 ITTRSCR---VCRSMK-CKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLP-LAIVTVA 344 (483)
Q Consensus 277 vTtR~~~---v~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai~~~~ 344 (483)
+++.... +..... +..+.+.+++.++..+++...+....... .++....|++.++|.+ .++..+.
T Consensus 184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i---~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL---DPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC---CTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4443211 211111 24589999999999999877654322222 3456788999999954 4555543
No 32
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.48 E-value=9.9e-06 Score=77.35 Aligned_cols=179 Identities=13% Similarity=0.170 Sum_probs=100.3
Q ss_pred ccccccchHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCC
Q 011568 140 RNLAGKRTGKIVKEIWEDLM------------GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLD 207 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 207 (483)
..++|.+ +.++.|.+.+. ....+-|.|+|++|+|||+||+.+++.+. .. ..+.++.+.-.+
T Consensus 12 ~di~G~~--~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~---~~~~i~~~~l~~ 84 (322)
T 1xwi_A 12 SDVAGLE--GAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NS---TFFSISSSDLVS 84 (322)
T ss_dssp GGSCSCH--HHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SC---EEEEEECCSSCC
T ss_pred HHhcCHH--HHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--CC---cEEEEEhHHHHh
Confidence 4588877 55555555441 12246799999999999999999998820 11 223344332110
Q ss_pred HHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------ccccccC---CCCCCC
Q 011568 208 LIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP-------------LEEVGIP---EPNEEN 271 (483)
Q Consensus 208 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~~~---l~~~~~ 271 (483)
.. . .........+.......++.+|+||+++.... ...+... +.....
T Consensus 85 --------------~~-~-g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 85 --------------KW-L-GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp --------------SS-C-CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred --------------hh-h-hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 00 1 11233344444444434789999999975311 0011111 111133
Q ss_pred CcEEEEecCChh-----HhhhcCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCc-hHHHHHHHH
Q 011568 272 GCKLVITTRSCR-----VCRSMKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRL-PLAIVTVAA 345 (483)
Q Consensus 272 ~s~ilvTtR~~~-----v~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~~~ 345 (483)
+..||.||.... +...+ ...+.++..+.++-.++|........... .......|++.+.|. +-.|..+..
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf-~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRF-EKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTC-CEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHhhc-CeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445555664321 12211 13478888899999999988765442222 345678899999886 545655543
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.48 E-value=4e-06 Score=81.42 Aligned_cols=178 Identities=16% Similarity=0.162 Sum_probs=100.9
Q ss_pred ccccccchHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCC
Q 011568 140 RNLAGKRTGKIVKEIWEDLM------------GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLD 207 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 207 (483)
..++|.+ ..++.+.+.+. ....+.|.|+|++|+|||+||+.+++.+ .. ..+.++.+.-.+
T Consensus 84 ~~i~G~~--~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~ 155 (357)
T 3d8b_A 84 EDIAGVE--FAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTS 155 (357)
T ss_dssp GGSCSCH--HHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCC
T ss_pred HHhCChH--HHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhc
Confidence 3588987 66666666552 2335679999999999999999999882 11 234455432111
Q ss_pred HHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------ccccccCCC----CCC
Q 011568 208 LIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP-------------LEEVGIPEP----NEE 270 (483)
Q Consensus 208 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~~~l~----~~~ 270 (483)
.. ..........+.......++.+|+||+++.... ...+...+. ...
T Consensus 156 --------------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 156 --------------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp --------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred --------------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 00 011122233333333333789999999953210 111111111 112
Q ss_pred CCcEEEEecCChh-----HhhhcCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCC-chHHHHHHH
Q 011568 271 NGCKLVITTRSCR-----VCRSMKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGR-LPLAIVTVA 344 (483)
Q Consensus 271 ~~s~ilvTtR~~~-----v~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~~ 344 (483)
.+..||.||.... +...+. ..+.+...+.++..+++...+....... .++....|++.+.| .|-.|..+.
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~-~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLV-KRLYIPLPEASARKQIVINLMSKEQCCL---SEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCC-EEEECCCCCHHHHHHHHHHHHHTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCc-eEEEeCCcCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3445555665422 112111 3478888899999998887764332222 35678889999988 555666555
Q ss_pred H
Q 011568 345 A 345 (483)
Q Consensus 345 ~ 345 (483)
.
T Consensus 296 ~ 296 (357)
T 3d8b_A 296 R 296 (357)
T ss_dssp H
T ss_pred H
Confidence 4
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.48 E-value=3e-07 Score=87.46 Aligned_cols=150 Identities=17% Similarity=0.194 Sum_probs=81.1
Q ss_pred cccccchHHHHHHHHHHhc---------------CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC--eEEEEEeC
Q 011568 141 NLAGKRTGKIVKEIWEDLM---------------GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFN--DVIWVTVS 203 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~---------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~~ 203 (483)
.++|.+ ..++.+.+.+. ......+.|+|++|+|||+||+.+++.+... .... ..+.++.+
T Consensus 32 ~i~G~~--~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~-~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 32 ELIGLK--PVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRL-GYVRKGHLVSVTRD 108 (309)
T ss_dssp HSSSCH--HHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHT-TSSSSCCEEEECGG
T ss_pred HccChH--HHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCcCCCcEEEEcHH
Confidence 478887 45555544332 2344579999999999999999988874322 1111 12333321
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc-----------cCccccccCCCCCCCC
Q 011568 204 QPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEA-----------FPLEEVGIPEPNEENG 272 (483)
Q Consensus 204 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~ 272 (483)
. +..... .........+.... +..+|+||+++.. .....+...+.....+
T Consensus 109 ~--------------l~~~~~--g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 169 (309)
T 3syl_A 109 D--------------LVGQYI--GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD 169 (309)
T ss_dssp G--------------TCCSST--TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred H--------------hhhhcc--cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence 1 111000 11111122222222 3459999999833 1112222222223345
Q ss_pred cEEEEecCChhH----------hhhcCCceEeccCCChHHHHHHHHHhhCC
Q 011568 273 CKLVITTRSCRV----------CRSMKCKQVEIELLSKKEALNLFIDKVGS 313 (483)
Q Consensus 273 s~ilvTtR~~~v----------~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 313 (483)
..+|+||..... ...+. ..+.+++++.++...++...+..
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRSRIA-HHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHHHEE-EEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHHhCC-eEEEcCCcCHHHHHHHHHHHHHH
Confidence 677777754321 11111 35899999999999999877643
No 35
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.47 E-value=1.2e-05 Score=75.93 Aligned_cols=177 Identities=11% Similarity=0.135 Sum_probs=99.4
Q ss_pred ccccccchHHHHHHHHHHhcC------------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCC
Q 011568 140 RNLAGKRTGKIVKEIWEDLMG------------DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLD 207 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 207 (483)
..++|.+ ..++.+.+.+.. ...+.+.|+|++|+|||++|+.+++.+ .. ..+.++.+...+
T Consensus 21 ~~i~G~~--~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~---~~~~i~~~~l~~ 92 (297)
T 3b9p_A 21 TDIAGQD--VAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SA---TFLNISAASLTS 92 (297)
T ss_dssp GGSCCCH--HHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TC---EEEEEESTTTSS
T ss_pred HHhCChH--HHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CC---CeEEeeHHHHhh
Confidence 4589988 667777665521 234689999999999999999999882 11 233444433110
Q ss_pred HHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccCc---------c----ccc---cCCCC--C
Q 011568 208 LIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFPL---------E----EVG---IPEPN--E 269 (483)
Q Consensus 208 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~---------~----~l~---~~l~~--~ 269 (483)
.. ..........+........+.+|+||+++....- . .+. ..++. .
T Consensus 93 --------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 --------------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp --------------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred --------------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 00 1122333333443333337899999999743110 0 010 01111 1
Q ss_pred CCCcEEEEecCChh-----HhhhcCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchH-HHHHH
Q 011568 270 ENGCKLVITTRSCR-----VCRSMKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPL-AIVTV 343 (483)
Q Consensus 270 ~~~s~ilvTtR~~~-----v~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~ 343 (483)
+.+..||.||.... +...+. ..+.+...+.++...++...+....... ..+....+++.+.|.+- .+..+
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~-~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFT-KRVYVSLPDEQTRELLLNRLLQKQGSPL---DTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCC-EEEECCCCCHHHHHHHHHHHHGGGSCCS---CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhhCC-eEEEeCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 13445666666432 222221 3467777788888888877654332222 35567889999998775 55444
Q ss_pred H
Q 011568 344 A 344 (483)
Q Consensus 344 ~ 344 (483)
.
T Consensus 233 ~ 233 (297)
T 3b9p_A 233 A 233 (297)
T ss_dssp H
T ss_pred H
Confidence 4
No 36
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.45 E-value=1.3e-06 Score=83.56 Aligned_cols=177 Identities=16% Similarity=0.173 Sum_probs=102.3
Q ss_pred ccccccchHHHHHHHHHHhc----------C--CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCC
Q 011568 140 RNLAGKRTGKIVKEIWEDLM----------G--DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLD 207 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~----------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 207 (483)
..++|.+ ..++.|...+. . ...+-+.|+|++|+|||+||+.+++.+ .. ..+.++.+
T Consensus 18 ~di~G~~--~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~v~~~---- 85 (322)
T 3eie_A 18 EDVAGLE--GAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NS---TFFSVSSS---- 85 (322)
T ss_dssp GGSCSCH--HHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TC---EEEEEEHH----
T ss_pred HHhcChH--HHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CC---CEEEEchH----
Confidence 4588987 67777766651 1 124579999999999999999999883 21 12333321
Q ss_pred HHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------ccccccC---CCCCCC
Q 011568 208 LIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP-------------LEEVGIP---EPNEEN 271 (483)
Q Consensus 208 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~~~---l~~~~~ 271 (483)
++ .... ..........+.......++.+|+||+++.... ...+... +.....
T Consensus 86 --~l----~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 --DL----VSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp --HH----HTTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred --HH----hhcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 11 1100 112233344444444444789999999974321 1111111 112234
Q ss_pred CcEEEEecCChhH-----hhhcCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCC-chHHHHHHH
Q 011568 272 GCKLVITTRSCRV-----CRSMKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGR-LPLAIVTVA 344 (483)
Q Consensus 272 ~s~ilvTtR~~~v-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~~ 344 (483)
+..||.||..... ...+ ...+.+...+.++-.++|...+....... .......|++.+.| .+-.|..+.
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf-~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRF-ERRIYIPLPDLAARTTMFEINVGDTPCVL---TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHC-CEEEECCCCCHHHHHHHHHHHHTTCCCCC---CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHccc-CeEEEeCCCCHHHHHHHHHHHhccCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5556666654321 2211 13478888999999999998876543222 34567888888887 455555444
No 37
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.45 E-value=7.6e-06 Score=80.43 Aligned_cols=177 Identities=12% Similarity=0.130 Sum_probs=99.0
Q ss_pred ccccccchHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCC
Q 011568 140 RNLAGKRTGKIVKEIWEDLM------------GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLD 207 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 207 (483)
..++|.+ ..++.+..++. ....+-|.|+|++|+|||+||+.+++.+ .. ..+.++++.-.+
T Consensus 115 ~~iiG~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~ 186 (389)
T 3vfd_A 115 DDIAGQD--LAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTS 186 (389)
T ss_dssp GGSCSCH--HHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC--
T ss_pred HHhCCHH--HHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhc
Confidence 4589988 67777776661 1224689999999999999999998872 11 233444333211
Q ss_pred HHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC---------c----cccccCC---C-CCC
Q 011568 208 LIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP---------L----EEVGIPE---P-NEE 270 (483)
Q Consensus 208 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~---------~----~~l~~~l---~-~~~ 270 (483)
. . .... ......+........+.+|+||+++.... . ..+...+ . ...
T Consensus 187 ~--~-------------~g~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 187 K--Y-------------VGEG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp --------------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred c--c-------------cchH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 0 0 0011 22233333333333678999999974310 0 0111000 0 112
Q ss_pred CCcEEEEecCChh-----HhhhcCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchH-HHHHHH
Q 011568 271 NGCKLVITTRSCR-----VCRSMKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPL-AIVTVA 344 (483)
Q Consensus 271 ~~s~ilvTtR~~~-----v~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~ 344 (483)
....||.||.... +...+. ..+.+...+.++...++...+....... ..+....|++.+.|..- ++..+.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~-~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFI-KRVYVSLPNEETRLLLLKNLLCKQGSPL---TQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCC-EEEECCCCCHHHHHHHHHHHHTTSCCCS---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcc-eEEEcCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2345555665422 112111 3478888999999999988775543333 45677889999988543 555544
No 38
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.44 E-value=2.2e-06 Score=82.07 Aligned_cols=170 Identities=11% Similarity=0.122 Sum_probs=99.0
Q ss_pred ccccccchHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKV-SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
..++|.+ +.++.+..++..+.. .++.+.|++|+|||++|+.+++.+ . ...+.++.+.. . .+.++..+..
T Consensus 26 ~~ivg~~--~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~-~~~i~~~~~~ 95 (324)
T 3u61_B 26 DECILPA--FDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-K-IDFVRGPLTN 95 (324)
T ss_dssp TTSCCCH--HHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-C-HHHHHTHHHH
T ss_pred HHHhCcH--HHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-C-HHHHHHHHHH
Confidence 4589998 788888888887654 677888889999999999999883 1 23455554332 2 2222332222
Q ss_pred hcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc---CccccccCCCCCCCCcEEEEecCChh-----HhhhcCC
Q 011568 219 LKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF---PLEEVGIPEPNEENGCKLVITTRSCR-----VCRSMKC 290 (483)
Q Consensus 219 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~---~~~~l~~~l~~~~~~s~ilvTtR~~~-----v~~~~~~ 290 (483)
.....+ .. +++.+|+||+++... ....+...+.....+..+|+||.... +... .
T Consensus 96 ~~~~~~---------------~~-~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR--~ 157 (324)
T 3u61_B 96 FASAAS---------------FD-GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR--C 157 (324)
T ss_dssp HHHBCC---------------CS-SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH--S
T ss_pred HHhhcc---------------cC-CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh--C
Confidence 211111 01 268899999998543 22222222211123567777776532 1122 1
Q ss_pred ceEeccCCChHHHHHHH-------HHhhCCCCCCCCCcch-HHHHHHHHHcCCchHHH
Q 011568 291 KQVEIELLSKKEALNLF-------IDKVGSSILQVPTLNE-GIINEVVEECGRLPLAI 340 (483)
Q Consensus 291 ~~~~l~~L~~~ea~~Lf-------~~~~~~~~~~~~~~~~-~~~~~i~~~~~G~Plai 340 (483)
..+.+.+++.++-.+++ ...+....... .+ +....|++.++|.+..+
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~---~~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAI---ADMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCB---SCHHHHHHHHHHTCSCTTHH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC---CcHHHHHHHHHhCCCCHHHH
Confidence 35899999988843332 22221111111 24 67888999998877643
No 39
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.38 E-value=2.6e-06 Score=81.60 Aligned_cols=175 Identities=19% Similarity=0.218 Sum_probs=99.6
Q ss_pred ccc-ccchHHHHHHHHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 011568 141 NLA-GKRTGKIVKEIWEDLMGD--KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIAT 217 (483)
Q Consensus 141 ~~v-Gr~~~~~~~~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 217 (483)
+|+ |.........+..++... ....+.|+|++|+||||||+.+++.+... .+ .+++++. .++...+..
T Consensus 12 ~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~-~~~~i~~------~~~~~~~~~ 82 (324)
T 1l8q_A 12 NFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GY-RVIYSSA------DDFAQAMVE 82 (324)
T ss_dssp SCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TC-CEEEEEH------HHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CC-EEEEEEH------HHHHHHHHH
Confidence 455 544223344455555443 35689999999999999999999884322 12 2455553 333444444
Q ss_pred HhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----ccccccCCCC-CCCCcEEEEecCChh---------
Q 011568 218 ALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP----LEEVGIPEPN-EENGCKLVITTRSCR--------- 283 (483)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~----~~~l~~~l~~-~~~~s~ilvTtR~~~--------- 283 (483)
.+... . ...+...+. ++.+|+|||++.... ...+...+.. ...+..+|+||.+..
T Consensus 83 ~~~~~-----~----~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~ 151 (324)
T 1l8q_A 83 HLKKG-----T----INEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDR 151 (324)
T ss_dssp HHHHT-----C----HHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHH
T ss_pred HHHcC-----c----HHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhH
Confidence 43221 1 112223333 467999999975431 1222211110 123556777775422
Q ss_pred HhhhcCC-ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHH
Q 011568 284 VCRSMKC-KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAI 340 (483)
Q Consensus 284 v~~~~~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 340 (483)
+...+.. ..+.+++ +.++...++...+....... .++....|++.+ |.+-.+
T Consensus 152 L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l---~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 152 LVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLEL---RKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp HHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCC---CHHHHHHHHHHC-SSHHHH
T ss_pred hhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHhC-CCHHHH
Confidence 1222222 3489999 99999999988764332222 456788899999 876543
No 40
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.37 E-value=7.6e-06 Score=78.65 Aligned_cols=169 Identities=9% Similarity=0.091 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhhccCCC------------------CCCeEEEEEeC---CCC
Q 011568 149 KIVKEIWEDLMGDK-VSKIGVWGMGGIGKTTIMSNINNKLHEKPN------------------KFNDVIWVTVS---QPL 206 (483)
Q Consensus 149 ~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~~~---~~~ 206 (483)
+..+.+...+.++. .+.+.++|++|+|||++|+.+.+.+..... .+....++... ...
T Consensus 9 ~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~ 88 (334)
T 1a5t_A 9 PDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTL 88 (334)
T ss_dssp HHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSB
T ss_pred HHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCC
Confidence 45667777777665 457999999999999999999988522111 01123333322 111
Q ss_pred CHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEEEecCChh-
Q 011568 207 DLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLVITTRSCR- 283 (483)
Q Consensus 207 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ilvTtR~~~- 283 (483)
.+. ..+++.+.+.... .. +++-++|+|+++... ..+.+...+-....++.+|++|.+..
T Consensus 89 ~i~-~ir~l~~~~~~~~----------------~~-~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~ 150 (334)
T 1a5t_A 89 GVD-AVREVTEKLNEHA----------------RL-GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPER 150 (334)
T ss_dssp CHH-HHHHHHHHTTSCC----------------TT-SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred CHH-HHHHHHHHHhhcc----------------cc-CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHh
Confidence 111 1222322222110 01 267899999998532 22223222222234566666665532
Q ss_pred Hhhh--cCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHH
Q 011568 284 VCRS--MKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTV 343 (483)
Q Consensus 284 v~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 343 (483)
+... ..+..+.+.+++.++..+.+.... .. .++.+..+++.++|.|..+..+
T Consensus 151 l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~---~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 151 LLATLRSRCRLHYLAPPPEQYAVTWLSREV-----TM---SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHC-----CC---CHHHHHHHHHHTTTCHHHHHHT
T ss_pred CcHHHhhcceeeeCCCCCHHHHHHHHHHhc-----CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 2221 123468999999999999998875 11 3456688999999999766443
No 41
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.33 E-value=8.6e-06 Score=75.23 Aligned_cols=178 Identities=14% Similarity=0.170 Sum_probs=92.7
Q ss_pred ccccccchHHHHHHH---HHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCC
Q 011568 140 RNLAGKRTGKIVKEI---WEDLMG---------DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLD 207 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l---~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 207 (483)
..++|.+ ..++.+ +.++.. ...+.+.|+|++|+|||++|+.+++.+ .. ..+.++.+.-.+
T Consensus 6 ~~i~G~~--~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~---~~~~~~~~~~~~ 77 (262)
T 2qz4_A 6 KDVAGMH--EAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QV---PFLAMAGAEFVE 77 (262)
T ss_dssp TSSCSCH--HHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TC---CEEEEETTTTSS
T ss_pred HHhCCHH--HHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CC---CEEEechHHHHh
Confidence 3488887 444444 333332 224568899999999999999999883 11 234444433111
Q ss_pred HHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc-------------C----ccccccCCC--C
Q 011568 208 LIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF-------------P----LEEVGIPEP--N 268 (483)
Q Consensus 208 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~-------------~----~~~l~~~l~--~ 268 (483)
. .. .........+........+.+|+||+++... . +..+...+. .
T Consensus 78 ~---------------~~-~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 78 V---------------IG-GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp S---------------ST-THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred h---------------cc-ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 0 00 0111222233333333368999999998531 0 111111111 1
Q ss_pred CCCCcEEEEecCChhHh-hh-c---CC-ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchH-HHH
Q 011568 269 EENGCKLVITTRSCRVC-RS-M---KC-KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPL-AIV 341 (483)
Q Consensus 269 ~~~~s~ilvTtR~~~v~-~~-~---~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~ 341 (483)
...+..+|.||...... .. . .. ..+.++..+.++-.+++...+........ .......+++.+.|.+- .+.
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~l~ 219 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQS--STFYSQRLAELTPGFSGADIA 219 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBT--HHHHHHHHHHTCTTCCHHHHH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcc--hhhHHHHHHHHCCCCCHHHHH
Confidence 12345566666543321 11 1 11 34788899999999999887643322210 12234678888888653 444
Q ss_pred HH
Q 011568 342 TV 343 (483)
Q Consensus 342 ~~ 343 (483)
.+
T Consensus 220 ~l 221 (262)
T 2qz4_A 220 NI 221 (262)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 42
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.33 E-value=4.1e-06 Score=81.20 Aligned_cols=177 Identities=16% Similarity=0.166 Sum_probs=99.0
Q ss_pred ccccccchHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCC
Q 011568 140 RNLAGKRTGKIVKEIWEDLM------------GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLD 207 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 207 (483)
..++|.+ ..++.|...+. ....+-|.|+|++|+|||+||+.+++.+ .. ..+.++.+
T Consensus 51 ~di~G~~--~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~---~~~~v~~~---- 118 (355)
T 2qp9_X 51 EDVAGLE--GAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NS---TFFSVSSS---- 118 (355)
T ss_dssp GGSCCGG--GHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TC---EEEEEEHH----
T ss_pred HHhCCHH--HHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CC---CEEEeeHH----
Confidence 4588988 56666666551 1123468899999999999999999983 11 12333322
Q ss_pred HHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------ccccccCC---CCCCC
Q 011568 208 LIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP-------------LEEVGIPE---PNEEN 271 (483)
Q Consensus 208 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~~~l---~~~~~ 271 (483)
++. ... ... .......+.......++.+|+||+++.... ...+...+ .....
T Consensus 119 --~l~--------~~~-~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 119 --DLV--------SKW-MGE-SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp --HHH--------SCC-----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred --HHh--------hhh-cch-HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 111 110 011 123333444444333789999999984321 11111111 11123
Q ss_pred CcEEEEecCChh-----HhhhcCCceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCC-chHHHHHHH
Q 011568 272 GCKLVITTRSCR-----VCRSMKCKQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGR-LPLAIVTVA 344 (483)
Q Consensus 272 ~s~ilvTtR~~~-----v~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~~ 344 (483)
+..||.||.... +...+ ...+.+...+.++-.++|........... .......|++.+.| .|-.|..+.
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf-~~~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRF-ERRIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTC-CEEEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHccc-CEEEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455565665432 22211 13478888999999999988775442222 34567889999988 454555544
No 43
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=5.4e-06 Score=79.91 Aligned_cols=177 Identities=9% Similarity=0.150 Sum_probs=100.4
Q ss_pred cccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCC-eEEEEEeCCCCCHHHHHHHHHHHh
Q 011568 141 NLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFN-DVIWVTVSQPLDLIKLQTEIATAL 219 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~il~~l 219 (483)
.++|.+ ..++.+..++..+..+-+.++|++|+||||+|+.+++.+. ...+. .+.-++.+.......+ ++++..+
T Consensus 26 ~~~g~~--~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~~i-r~~i~~~ 100 (340)
T 1sxj_C 26 EVYGQN--EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGIDVV-RNQIKDF 100 (340)
T ss_dssp GCCSCH--HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCSHHHH-HTHHHHH
T ss_pred HhcCcH--HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCcccccHHHH-HHHHHHH
Confidence 477876 6788888888877665599999999999999999998842 11111 1222333222222111 1122211
Q ss_pred cccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccccCCCCCCCCcEEEEecCChh-Hhhh--cCCceEe
Q 011568 220 KQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF--PLEEVGIPEPNEENGCKLVITTRSCR-VCRS--MKCKQVE 294 (483)
Q Consensus 220 ~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~s~ilvTtR~~~-v~~~--~~~~~~~ 294 (483)
..... .+.+ ++-++|+|+++... ..+.+...+......+.++++|.... +... ..+..+.
T Consensus 101 ~~~~~--------------~~~~-~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~ 165 (340)
T 1sxj_C 101 ASTRQ--------------IFSK-GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFR 165 (340)
T ss_dssp HHBCC--------------SSSC-SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred Hhhcc--------------cCCC-CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEe
Confidence 10000 0112 47889999987431 12222111111123456666664422 1111 1124589
Q ss_pred ccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHH
Q 011568 295 IELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAI 340 (483)
Q Consensus 295 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 340 (483)
+.+++.++..+.+...+....... .++....|++.++|.+--+
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~~i---~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 166 FQPLPQEAIERRIANVLVHEKLKL---SPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCCB---CHHHHHHHHHHHTTCHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 999999999998887663322222 4567888999999988744
No 44
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.30 E-value=1.2e-05 Score=80.43 Aligned_cols=179 Identities=15% Similarity=0.201 Sum_probs=97.9
Q ss_pred ccccccchHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCC
Q 011568 140 RNLAGKRTGKIVKEIWEDLM------------GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLD 207 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 207 (483)
..++|.+ ..++.|...+. ....+-|.|+|++|+|||+||+.+++.+ . ..-++.++...
T Consensus 134 ~di~G~~--~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~---~----~~~~~~v~~~~- 203 (444)
T 2zan_A 134 SDVAGLE--GAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---N----NSTFFSISSSD- 203 (444)
T ss_dssp GGSCSCH--HHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---C----SSEEEEECCC--
T ss_pred HHhcCHH--HHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---C----CCCEEEEeHHH-
Confidence 4588887 56666666552 1234679999999999999999999982 1 11233333221
Q ss_pred HHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------ccccccCCCC---CCC
Q 011568 208 LIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP-------------LEEVGIPEPN---EEN 271 (483)
Q Consensus 208 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~~~l~~---~~~ 271 (483)
+.... .+. .. .....+........+.+|+||+++.... ...+...+.. ...
T Consensus 204 ---l~~~~---~g~---~~----~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 204 ---LVSKW---LGE---SE----KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp -----------------CC----CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred ---HHhhh---cch---HH----HHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 11000 111 01 1122333333333789999999985310 1111111111 134
Q ss_pred CcEEEEecCChhHh-h--hcCC-ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCc-hHHHHHHH
Q 011568 272 GCKLVITTRSCRVC-R--SMKC-KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRL-PLAIVTVA 344 (483)
Q Consensus 272 ~s~ilvTtR~~~v~-~--~~~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~~ 344 (483)
+..||.||...... . .-.. ..+.++..+.++...+|...+....... .......|++.+.|. +-.|..+.
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 55666666543211 1 0122 3477888888889999988765432221 345678899999884 54555544
No 45
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.28 E-value=1e-06 Score=76.63 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=40.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..++|++ .+++.+.+.+.....+.+.|+|++|+|||+||+.+++.+
T Consensus 22 ~~~~g~~--~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRD--TEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCH--HHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcch--HHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3589998 789999999988767788999999999999999999884
No 46
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.25 E-value=4.6e-07 Score=75.81 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=32.2
Q ss_pred cccccchHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 141 NLAGKRTGKIVKEIWEDLMG--DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.++|+. ..+.++.+.+.. ....-|.|+|++|+|||++|+.+++.
T Consensus 2 ~iiG~s--~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRS--EWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSS--HHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCC--HHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 478888 666666665531 23345789999999999999999887
No 47
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.23 E-value=9.2e-06 Score=81.75 Aligned_cols=149 Identities=13% Similarity=0.212 Sum_probs=81.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccC--CCCCCe--EEEEEeCCCCCHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEK--PNKFND--VIWVTVSQPLDLIKLQTEI 215 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~f~~--~~wv~~~~~~~~~~~~~~i 215 (483)
.+++|++ .+++.+...+......-+.|+|++|+|||++|+.+++.+..- ...... .+.++++
T Consensus 180 d~iiGr~--~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------ 245 (468)
T 3pxg_A 180 DPVIGRS--KEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------ 245 (468)
T ss_dssp CCCCCCH--HHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCccCcH--HHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------------
Confidence 3599999 889999999977666677899999999999999999884221 111111 2223322
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccCccccccCCCCCCCCcEEEEecCChhH---hhhc----
Q 011568 216 ATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFPLEEVGIPEPNEENGCKLVITTRSCRV---CRSM---- 288 (483)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~ilvTtR~~~v---~~~~---- 288 (483)
..... ........+...+...++.+|++|. .......+...+. ....++|.+|..... ....
T Consensus 246 -~~~~g------~~e~~~~~~~~~~~~~~~~iLfiD~--~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 246 -TKYRG------EFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred -ccccc------hHHHHHHHHHHHHHhcCCeEEEEeC--chhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHH
Confidence 00000 0011222333333333788999992 1111222222222 223455555544331 1111
Q ss_pred -CCceEeccCCChHHHHHHHHHhhCC
Q 011568 289 -KCKQVEIELLSKKEALNLFIDKVGS 313 (483)
Q Consensus 289 -~~~~~~l~~L~~~ea~~Lf~~~~~~ 313 (483)
....+.+++.+.++...++......
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHHHH
Confidence 1235899999999999999876543
No 48
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.17 E-value=4.8e-05 Score=73.00 Aligned_cols=50 Identities=8% Similarity=0.189 Sum_probs=36.9
Q ss_pred eEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHHHH
Q 011568 292 QVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVTVA 344 (483)
Q Consensus 292 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 344 (483)
.+.+++.+.++..+++.+.+....... .++.+..|++.+.|.|-.+..+.
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~~~~---~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMDVEI---EDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHTSTTCHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHhcCCChHHHHHHH
Confidence 378999999999999988764322222 46778999999999997554433
No 49
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.12 E-value=6.4e-06 Score=89.36 Aligned_cols=177 Identities=10% Similarity=0.185 Sum_probs=93.6
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcc--CCCCC--CeEEEEEeCCCCCHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHE--KPNKF--NDVIWVTVSQPLDLIKLQTEI 215 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~~f--~~~~wv~~~~~~~~~~~~~~i 215 (483)
.+++||+ +++..++..+......-+.|+|++|+|||+||+.+++.+.. +.... ..+++++++.-..
T Consensus 170 d~viGr~--~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------- 239 (854)
T 1qvr_A 170 DPVIGRD--EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------- 239 (854)
T ss_dssp CCCCSCH--HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------
T ss_pred cccCCcH--HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc--------
Confidence 3589999 89999999988776667899999999999999999988422 11111 1244444322100
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCccC-------cc---ccccCCCCCCCCcEEEEecCChhH
Q 011568 216 ATALKQSLPENEDKVSRAGRLLRMLKA-KEKFVLILDDMWEAFP-------LE---EVGIPEPNEENGCKLVITTRSCRV 284 (483)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~~LlVlDdv~~~~~-------~~---~l~~~l~~~~~~s~ilvTtR~~~v 284 (483)
+.. ...........+...+.. +++.+|+||+++.... ++ .+...+. ..+..+|.+|.....
T Consensus 240 ----g~~--~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 240 ----GAK--YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEY 311 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHH
T ss_pred ----cCc--cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCchHH
Confidence 000 011233334444444443 3689999999975320 11 1111111 123345555543322
Q ss_pred -----hhhc--CCceEeccCCChHHHHHHHHHhhCCC-CCCCCCcchHHHHHHHHHcC
Q 011568 285 -----CRSM--KCKQVEIELLSKKEALNLFIDKVGSS-ILQVPTLNEGIINEVVEECG 334 (483)
Q Consensus 285 -----~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~-~~~~~~~~~~~~~~i~~~~~ 334 (483)
.... ....+.+++++.++..+++....... ........++....+++.+.
T Consensus 312 ~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~ 369 (854)
T 1qvr_A 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSH 369 (854)
T ss_dssp HHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHH
T ss_pred hhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHh
Confidence 1111 11348999999999999987543211 00011123455666666653
No 50
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.07 E-value=1.3e-05 Score=75.60 Aligned_cols=145 Identities=13% Similarity=0.065 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcccCCCCC
Q 011568 149 KIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQSLPENE 227 (483)
Q Consensus 149 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~ 227 (483)
+.++.+...+.+++.+.+.++|++|+||||+|..+.+.+...........+++.+. ..++.+ .++++..+.....
T Consensus 4 ~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~~~p~--- 79 (305)
T 2gno_A 4 DQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLNYSPE--- 79 (305)
T ss_dssp CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHTSCCS---
T ss_pred HHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHhhccc---
Confidence 35667777777777789999999999999999999876321222234456665543 223322 3445444432110
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEEecCCh-hHhhhcCCceEeccCCChHHHH
Q 011568 228 DKVSRAGRLLRMLKAKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVITTRSC-RVCRSMKCKQVEIELLSKKEAL 304 (483)
Q Consensus 228 ~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilvTtR~~-~v~~~~~~~~~~l~~L~~~ea~ 304 (483)
. +++-++|+|+++.. ...+.+...+-...+.+.+|++|.+. .+........+++.+++.++..
T Consensus 80 -------------~-~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~l~~~~i~ 145 (305)
T 2gno_A 80 -------------L-YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFR 145 (305)
T ss_dssp -------------S-SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHHHH
T ss_pred -------------c-CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCCCCHHHHH
Confidence 1 25779999999753 22333332222223456666666443 2222211127899999999999
Q ss_pred HHHHHhh
Q 011568 305 NLFIDKV 311 (483)
Q Consensus 305 ~Lf~~~~ 311 (483)
+.+.+..
T Consensus 146 ~~L~~~~ 152 (305)
T 2gno_A 146 DLVKEKI 152 (305)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998876
No 51
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.98 E-value=4.6e-05 Score=81.63 Aligned_cols=151 Identities=12% Similarity=0.156 Sum_probs=82.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCC--CCCCeEEEEEeCCCCCHHHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKP--NKFNDVIWVTVSQPLDLIKLQTEIAT 217 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~il~ 217 (483)
..++|++ ++++.+...+......-+.++|++|+|||++|+.+++.+.... ......-++.++.
T Consensus 180 d~iiG~~--~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 180 DPVIGRS--KEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CCCCCCH--HHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCccCch--HHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 3599999 8999999999776666789999999999999999998852211 1111111222111
Q ss_pred HhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccCccccccCCCCCCCCcEEEEecCChhHh---hhc-----C
Q 011568 218 ALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFPLEEVGIPEPNEENGCKLVITTRSCRVC---RSM-----K 289 (483)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~ilvTtR~~~v~---~~~-----~ 289 (483)
+.... ...+.....+.......++.+|++|.- ......+...+. ....++|.||...... ... .
T Consensus 245 --g~~~~--G~~e~~l~~~~~~~~~~~~~iLfiD~~--~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rR 316 (758)
T 3pxi_A 245 --GTKYR--GEFEDRLKKVMDEIRQAGNIILFIDAA--IDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERR 316 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred --ccccc--chHHHHHHHHHHHHHhcCCEEEEEcCc--hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhh
Confidence 11000 011112223333333337889999921 111222222222 2234566665543310 100 1
Q ss_pred CceEeccCCChHHHHHHHHHhhCC
Q 011568 290 CKQVEIELLSKKEALNLFIDKVGS 313 (483)
Q Consensus 290 ~~~~~l~~L~~~ea~~Lf~~~~~~ 313 (483)
...+.++..+.++..+++......
T Consensus 317 f~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 317 FQPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp EEEEECCCCCHHHHHHHHHHTTTT
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHH
Confidence 145899999999999999876543
No 52
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.96 E-value=0.00013 Score=78.15 Aligned_cols=154 Identities=15% Similarity=0.189 Sum_probs=90.8
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCC---CCeEEE-EEeCCCCCHHHHHHHH
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNK---FNDVIW-VTVSQPLDLIKLQTEI 215 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~---f~~~~w-v~~~~~~~~~~~~~~i 215 (483)
..++||+ .++..+.+.|......-+.|+|++|+|||++|+.+++.+....-. ....+| ++.+.-
T Consensus 186 d~~iGr~--~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------- 253 (758)
T 1r6b_X 186 DPLIGRE--KELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------- 253 (758)
T ss_dssp CCCCSCH--HHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCccCCH--HHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------
Confidence 3589998 889999999987767778999999999999999999874221100 122222 221110
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--------C---ccccccCCCCCCCCcEEEEecCChhH
Q 011568 216 ATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF--------P---LEEVGIPEPNEENGCKLVITTRSCRV 284 (483)
Q Consensus 216 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--------~---~~~l~~~l~~~~~~s~ilvTtR~~~v 284 (483)
+.. .......+.....+.+.+...++.+|+||+++... . ...+...+. ..+..+|.+|.....
T Consensus 254 ---~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~ 327 (758)
T 1r6b_X 254 ---LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEF 327 (758)
T ss_dssp ----CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHH
T ss_pred ---hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHH
Confidence 000 01122344445555555554467999999997541 1 111222222 234456666654332
Q ss_pred hhhc--------CCceEeccCCChHHHHHHHHHhh
Q 011568 285 CRSM--------KCKQVEIELLSKKEALNLFIDKV 311 (483)
Q Consensus 285 ~~~~--------~~~~~~l~~L~~~ea~~Lf~~~~ 311 (483)
.... ....+.+...+.++..+++....
T Consensus 328 ~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 1111 11348899999999998887654
No 53
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=0.00035 Score=67.71 Aligned_cols=150 Identities=12% Similarity=0.102 Sum_probs=84.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK 241 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (483)
..+=|.++||+|+|||.||+.+++.. .. ..+.++.+.-.+ . .....+.....+...-.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~---~~---~f~~v~~s~l~s--------------k--~vGese~~vr~lF~~Ar 238 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT---DC---KFIRVSGAELVQ--------------K--YIGEGSRMVRELFVMAR 238 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH---TC---EEEEEEGGGGSC--------------S--STTHHHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh---CC---CceEEEhHHhhc--------------c--ccchHHHHHHHHHHHHH
Confidence 34678999999999999999999982 22 234444332110 0 01122334444444444
Q ss_pred cCCeEEEEEeCCCCccC----------------ccccccCCC--CCCCCcEEEEecCChh-Hh---hhcC-C-ceEeccC
Q 011568 242 AKEKFVLILDDMWEAFP----------------LEEVGIPEP--NEENGCKLVITTRSCR-VC---RSMK-C-KQVEIEL 297 (483)
Q Consensus 242 ~~~~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~~s~ilvTtR~~~-v~---~~~~-~-~~~~l~~ 297 (483)
...+++|+||+++.... +..+...+. ....+..||.||.... +. ...+ . ..+.++.
T Consensus 239 ~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~l 318 (405)
T 4b4t_J 239 EHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPP 318 (405)
T ss_dssp HTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCC
T ss_pred HhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCC
Confidence 44899999999984210 011111111 1233445666664332 21 1112 1 3588888
Q ss_pred CChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCch
Q 011568 298 LSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLP 337 (483)
Q Consensus 298 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 337 (483)
-+.++-.++|+.+......... . ....|++.+.|.-
T Consensus 319 Pd~~~R~~Il~~~~~~~~l~~d--v--dl~~lA~~t~G~S 354 (405)
T 4b4t_J 319 PSVAARAEILRIHSRKMNLTRG--I--NLRKVAEKMNGCS 354 (405)
T ss_dssp CCHHHHHHHHHHHHTTSBCCSS--C--CHHHHHHHCCSCC
T ss_pred cCHHHHHHHHHHHhcCCCCCcc--C--CHHHHHHHCCCCC
Confidence 8888889999877654422211 1 2567888888753
No 54
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.95 E-value=5.5e-05 Score=71.42 Aligned_cols=171 Identities=13% Similarity=0.155 Sum_probs=91.5
Q ss_pred ccccccchHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCC
Q 011568 140 RNLAGKRTGKIVKEIWEDLM-------------GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPL 206 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 206 (483)
..++|.+ ..++.+.+++. -...+.+.|+|++|+|||+||+.+++.+ .. ..+.++
T Consensus 15 ~di~G~~--~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~---~~i~v~----- 81 (301)
T 3cf0_A 15 EDIGGLE--DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QA---NFISIK----- 81 (301)
T ss_dssp GGSCSCH--HHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---EEEEEC-----
T ss_pred HHhCCHH--HHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CC---CEEEEE-----
Confidence 4588887 55555555442 1345679999999999999999999882 21 122222
Q ss_pred CHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc------------C----ccccccCCC--C
Q 011568 207 DLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF------------P----LEEVGIPEP--N 268 (483)
Q Consensus 207 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~------------~----~~~l~~~l~--~ 268 (483)
..++.... .+.. ......+........+.+|+||+++... . ...+...+. .
T Consensus 82 -~~~l~~~~---~g~~-------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 82 -GPELLTMW---FGES-------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp -HHHHHHHH---HTTC-------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred -hHHHHhhh---cCch-------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 22222221 1111 1112233333332378999999997311 0 111111111 1
Q ss_pred CCCCcEEEEecCChhHh-hh-cC---C-ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCchH
Q 011568 269 EENGCKLVITTRSCRVC-RS-MK---C-KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLPL 338 (483)
Q Consensus 269 ~~~~s~ilvTtR~~~v~-~~-~~---~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 338 (483)
...+..||.||...... .. .. . ..+.++..+.++-.+++............ . ....++..+.|.|-
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~--~--~~~~la~~~~g~sg 222 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD--V--DLEFLAKMTNGFSG 222 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSS--C--CHHHHHHTCSSCCH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCcc--c--hHHHHHHHcCCCCH
Confidence 12355667677543221 11 11 2 34789999999999999887654321111 1 13456666777664
No 55
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.00024 Score=69.89 Aligned_cols=150 Identities=15% Similarity=0.156 Sum_probs=82.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK 241 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (483)
..+=|.++||+|+|||+||+.+++.+ .. ..+.++.+.-.+ . ...........+.....
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~---~~---~~~~v~~s~l~s--------------k--~~Gese~~ir~~F~~A~ 271 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATI---GA---NFIFSPASGIVD--------------K--YIGESARIIREMFAYAK 271 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH---TC---EEEEEEGGGTCC--------------S--SSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh---CC---CEEEEehhhhcc--------------c--cchHHHHHHHHHHHHHH
Confidence 35779999999999999999999983 21 234444433111 0 01122333444444444
Q ss_pred cCCeEEEEEeCCCCccC----------------ccccccCC--CCCCCCcEEEEecCChhHh-hhc---C-C-ceEeccC
Q 011568 242 AKEKFVLILDDMWEAFP----------------LEEVGIPE--PNEENGCKLVITTRSCRVC-RSM---K-C-KQVEIEL 297 (483)
Q Consensus 242 ~~~~~LlVlDdv~~~~~----------------~~~l~~~l--~~~~~~s~ilvTtR~~~v~-~~~---~-~-~~~~l~~ 297 (483)
...+++|++|+++.... +..+...+ .....+..||.||...... ..+ + . ..|.++.
T Consensus 272 ~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~l 351 (437)
T 4b4t_L 272 EHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPL 351 (437)
T ss_dssp HSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCC
T ss_pred hcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCC
Confidence 44899999999984210 00111111 1123345667777543322 111 1 1 2478887
Q ss_pred CChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCch
Q 011568 298 LSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLP 337 (483)
Q Consensus 298 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 337 (483)
-+.++-.++|+.+......... . ....|++.+.|.-
T Consensus 352 Pd~~~R~~Il~~~~~~~~~~~d--~--dl~~lA~~t~G~s 387 (437)
T 4b4t_L 352 PNEAGRLEIFKIHTAKVKKTGE--F--DFEAAVKMSDGFN 387 (437)
T ss_dssp CCHHHHHHHHHHHHHTSCBCSC--C--CHHHHHHTCCSCC
T ss_pred cCHHHHHHHHHHHhcCCCCCcc--c--CHHHHHHhCCCCC
Confidence 7888888888877644321110 1 1466788888753
No 56
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.88 E-value=6.4e-05 Score=71.08 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=34.7
Q ss_pred cccccchHHHHHHHHHHhcC--------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 141 NLAGKRTGKIVKEIWEDLMG--------------DKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.++|.+ +.++.+...+.. .....+.|+|++|+|||++|+.+++.+
T Consensus 16 ~i~G~~--~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 16 HIIGQA--DAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TCCSCH--HHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcCChH--HHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 488988 666666665532 234578899999999999999999883
No 57
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.85 E-value=7e-06 Score=71.25 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCC
Q 011568 149 KIVKEIWEDLMG---DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPE 225 (483)
Q Consensus 149 ~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~ 225 (483)
+.++.+.+++.+ .....+.|+|++|+|||||++.+++.+... ..+. +++++ ..++...+.........
T Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-~g~~-~~~~~------~~~~~~~~~~~~~~~~~- 91 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK-KGIR-GYFFD------TKDLIFRLKHLMDEGKD- 91 (180)
T ss_dssp HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH-SCCC-CCEEE------HHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH-cCCe-EEEEE------HHHHHHHHHHHhcCchH-
Confidence 344444444433 235789999999999999999999884211 1111 23333 44555555444432211
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc--cCcc--ccccCCCC-CCCCcEEEEecCC
Q 011568 226 NEDKVSRAGRLLRMLKAKEKFVLILDDMWEA--FPLE--EVGIPEPN-EENGCKLVITTRS 281 (483)
Q Consensus 226 ~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~--~~~~--~l~~~l~~-~~~~s~ilvTtR~ 281 (483)
. .+...+. ++-+|||||++.. ..+. .+...+.. ...+..+|+||..
T Consensus 92 --~------~~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 92 --T------KFLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp --S------HHHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred --H------HHHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1 2223333 4678999999732 2221 11111111 1245678888864
No 58
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.83 E-value=5.2e-05 Score=70.16 Aligned_cols=44 Identities=25% Similarity=0.293 Sum_probs=30.4
Q ss_pred cccccchHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 141 NLAGKRTGKIVKEIWEDLMG--DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+++|.. ..+..+.+.+.. .....|.|+|++|+|||+||+.+++.
T Consensus 7 ~~ig~~--~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 7 NLLGEA--NSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ---CCC--HHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred cceeCC--HHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 478887 566655544421 22356889999999999999999987
No 59
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.82 E-value=3.9e-05 Score=72.55 Aligned_cols=44 Identities=11% Similarity=0.274 Sum_probs=33.1
Q ss_pred cccccchHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 141 NLAGKRTGKIVKEIWEDLMG--DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.++|+. ..+.++.+.+.. .....|.|+|++|+|||++|+.+.+.
T Consensus 3 ~iig~s--~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 3 HMIGSS--PAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp CCCCCS--HHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CcEECC--HHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 478887 566666555432 33456789999999999999999987
No 60
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.80 E-value=0.00026 Score=71.21 Aligned_cols=175 Identities=14% Similarity=0.174 Sum_probs=93.5
Q ss_pred cccccchHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCC
Q 011568 141 NLAGKRTGKIVKEIWEDLM-------------GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLD 207 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 207 (483)
.++|.+ ..++++.+++. .....-|.|+|++|+|||+||+.+++. ... ..+.++++.
T Consensus 205 ~i~G~~--~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~---~~~---~fv~vn~~~--- 273 (489)
T 3hu3_A 205 DIGGCR--KQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE---TGA---FFFLINGPE--- 273 (489)
T ss_dssp GCCSCH--HHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH---CSS---EEEEEEHHH---
T ss_pred HcCCHH--HHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH---hCC---CEEEEEchH---
Confidence 478877 56666665553 233467999999999999999999887 221 233444211
Q ss_pred HHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------ccccccCCC--CCCCC
Q 011568 208 LIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP-------------LEEVGIPEP--NEENG 272 (483)
Q Consensus 208 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~~~l~--~~~~~ 272 (483)
+ . .... .........+......+++.+|+||+++.... ...+...+. ....+
T Consensus 274 ---l----~----~~~~--g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 274 ---I----M----SKLA--GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp ---H----H----TSCT--THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred ---h----h----hhhc--chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 1 1 1100 11112222223323333789999999952110 011111111 12334
Q ss_pred cEEEEecCChhH-hhhc----CC-ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCc-hHHHHHH
Q 011568 273 CKLVITTRSCRV-CRSM----KC-KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRL-PLAIVTV 343 (483)
Q Consensus 273 s~ilvTtR~~~v-~~~~----~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~ 343 (483)
..||.||..... .... .. ..+.+...+.++-.++|...+....... ......++..+.|. +-.+..+
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~----~~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD----DVDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT----TCCHHHHHHTCTTCCHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc----hhhHHHHHHHccCCcHHHHHHH
Confidence 556666654321 1111 12 2488999999999999998865432221 11245667777764 4444433
No 61
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00025 Score=69.04 Aligned_cols=148 Identities=11% Similarity=0.114 Sum_probs=82.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
.+=|.++||+|+|||.||+.+++.. ... .+.++.+.- ... .....+.....++.....
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~---~~~---fi~v~~s~l--------------~sk--~vGesek~ir~lF~~Ar~ 273 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT---SAT---FLRIVGSEL--------------IQK--YLGDGPRLCRQIFKVAGE 273 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH---TCE---EEEEESGGG--------------CCS--SSSHHHHHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHh---CCC---EEEEEHHHh--------------hhc--cCchHHHHHHHHHHHHHh
Confidence 5679999999999999999999982 221 233443221 110 112233444444444444
Q ss_pred CCeEEEEEeCCCCccC----------------ccccccCC--CCCCCCcEEEEecCChhHh-hhc---CC--ceEeccCC
Q 011568 243 KEKFVLILDDMWEAFP----------------LEEVGIPE--PNEENGCKLVITTRSCRVC-RSM---KC--KQVEIELL 298 (483)
Q Consensus 243 ~~~~LlVlDdv~~~~~----------------~~~l~~~l--~~~~~~s~ilvTtR~~~v~-~~~---~~--~~~~l~~L 298 (483)
..+++|++|+++.... +..+...+ .....+..||.||...... ..+ +- ..|.++.-
T Consensus 274 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lP 353 (437)
T 4b4t_I 274 NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENP 353 (437)
T ss_dssp TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCC
T ss_pred cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCc
Confidence 4899999999874210 00011111 1123344566666443322 111 11 24778878
Q ss_pred ChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCc
Q 011568 299 SKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRL 336 (483)
Q Consensus 299 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 336 (483)
+.++-.++|..+......... . ....|++.+.|.
T Consensus 354 d~~~R~~Il~~~l~~~~l~~d--v--dl~~LA~~T~Gf 387 (437)
T 4b4t_I 354 DLSTKKKILGIHTSKMNLSED--V--NLETLVTTKDDL 387 (437)
T ss_dssp CHHHHHHHHHHHHTTSCBCSC--C--CHHHHHHHCCSC
T ss_pred CHHHHHHHHHHHhcCCCCCCc--C--CHHHHHHhCCCC
Confidence 888888898877654322111 1 256778888875
No 62
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00036 Score=68.56 Aligned_cols=149 Identities=15% Similarity=0.189 Sum_probs=77.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK 241 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (483)
..+-|.++||+|+|||+||+.+++.+ .. ..+.++.+.-.+ . ...........++....
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~---~~---~~~~v~~~~l~~--------------~--~~Ge~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANST---KA---AFIRVNGSEFVH--------------K--YLGEGPRMVRDVFRLAR 262 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHH---TC---EEEEEEGGGTCC--------------S--SCSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CC---CeEEEecchhhc--------------c--ccchhHHHHHHHHHHHH
Confidence 35669999999999999999999983 21 234444433111 0 01122333444444444
Q ss_pred cCCeEEEEEeCCCCcc--------C--------ccccccCCC--CCCCCcEEEEecCChh-H--h-hhcCC--ceEeccC
Q 011568 242 AKEKFVLILDDMWEAF--------P--------LEEVGIPEP--NEENGCKLVITTRSCR-V--C-RSMKC--KQVEIEL 297 (483)
Q Consensus 242 ~~~~~LlVlDdv~~~~--------~--------~~~l~~~l~--~~~~~s~ilvTtR~~~-v--~-~~~~~--~~~~l~~ 297 (483)
...+++|++|+++... . +..+...+. ....+..||.||.... + + ...+- ..|.++.
T Consensus 263 ~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~ 342 (428)
T 4b4t_K 263 ENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPS 342 (428)
T ss_dssp HTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCS
T ss_pred HcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCC
Confidence 4489999999986210 0 011111110 1234555666775332 1 1 11121 2477876
Q ss_pred CCh-HHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCc
Q 011568 298 LSK-KEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRL 336 (483)
Q Consensus 298 L~~-~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 336 (483)
++. ++-..+|..+........ ......|++.+.|.
T Consensus 343 lPd~~~R~~Il~~~~~~~~l~~----~~dl~~lA~~t~G~ 378 (428)
T 4b4t_K 343 LRDRRERRLIFGTIASKMSLAP----EADLDSLIIRNDSL 378 (428)
T ss_dssp SCCHHHHHHHHHHHHHSSCBCT----TCCHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHhcCCCCCc----ccCHHHHHHHCCCC
Confidence 654 445556665543321111 01256778888775
No 63
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.77 E-value=6.1e-06 Score=68.71 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=30.0
Q ss_pred cccccchHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 141 NLAGKRTGKIVKEIWEDLMG--DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.++|++ ..+.++.+.+.. ....-|.|+|++|+|||++|+.+++.
T Consensus 5 ~~iG~s--~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNS--AAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCC--HHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCC--HHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 478887 556665555432 22345789999999999999999876
No 64
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.74 E-value=3.5e-05 Score=73.10 Aligned_cols=105 Identities=12% Similarity=0.261 Sum_probs=56.3
Q ss_pred cccccchHHHHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHH
Q 011568 141 NLAGKRTGKIVKEIWEDLMGD---------KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKL 211 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 211 (483)
.++|.+ ..++.+...+... ....+.|+|++|+|||++|+.+++.+.. .-...+.++++...... .
T Consensus 18 ~i~G~~--~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~---~~~~~~~~~~~~~~~~~-~ 91 (311)
T 4fcw_A 18 RVVGQD--EAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD---TEEAMIRIDMTEYMEKH-A 91 (311)
T ss_dssp TCCSCH--HHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS---CGGGEEEEEGGGCCSTT-H
T ss_pred hcCCHH--HHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC---CCcceEEeecccccccc-c
Confidence 377877 5566655555321 1357999999999999999999988421 11224555654422211 1
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 011568 212 QTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEA 256 (483)
Q Consensus 212 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~ 256 (483)
...+ ++..... .... ....+...+......+|+||+++..
T Consensus 92 ~~~l---~g~~~~~-~~~~-~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 92 VSRL---IGAPPGY-VGYE-EGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp HHHH---HCCCTTS-TTTT-TCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred HHHh---cCCCCcc-cccc-ccchHHHHHHhCCCeEEEEeChhhc
Confidence 1111 2221110 0000 0012334444435579999999743
No 65
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.0001 Score=72.56 Aligned_cols=149 Identities=11% Similarity=0.102 Sum_probs=80.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK 241 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (483)
..+-|.++||+|+|||.||+.+++.+ .. ..+.++.+.-. .. .....+.....+.....
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~---~~---~f~~v~~s~l~--------------~~--~vGese~~ir~lF~~A~ 271 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQT---NA---TFLKLAAPQLV--------------QM--YIGEGAKLVRDAFALAK 271 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH---TC---EEEEEEGGGGC--------------SS--CSSHHHHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHh---CC---CEEEEehhhhh--------------hc--ccchHHHHHHHHHHHHH
Confidence 35679999999999999999999983 21 23344433211 10 01122333444444333
Q ss_pred cCCeEEEEEeCCCCc-------cC---------ccccccCCC--CCCCCcEEEEecCChh-Hhhhc---CC--ceEeccC
Q 011568 242 AKEKFVLILDDMWEA-------FP---------LEEVGIPEP--NEENGCKLVITTRSCR-VCRSM---KC--KQVEIEL 297 (483)
Q Consensus 242 ~~~~~LlVlDdv~~~-------~~---------~~~l~~~l~--~~~~~s~ilvTtR~~~-v~~~~---~~--~~~~l~~ 297 (483)
...+++|++|+++.. .. +..+...+. ....+..||.||.... +...+ +- ..+.++.
T Consensus 272 ~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~l 351 (434)
T 4b4t_M 272 EKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPL 351 (434)
T ss_dssp HHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCC
T ss_pred hcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCC
Confidence 337999999998731 00 011111111 1223445666664433 22211 11 2478888
Q ss_pred CChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCc
Q 011568 298 LSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRL 336 (483)
Q Consensus 298 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 336 (483)
-+.++-.++|+.+......... . ....|++.+.|.
T Consensus 352 Pd~~~R~~Il~~~~~~~~~~~d--v--dl~~lA~~t~G~ 386 (434)
T 4b4t_M 352 PSEDSRAQILQIHSRKMTTDDD--I--NWQELARSTDEF 386 (434)
T ss_dssp CCHHHHHHHHHHHHHHSCBCSC--C--CHHHHHHHCSSC
T ss_pred cCHHHHHHHHHHHhcCCCCCCc--C--CHHHHHHhCCCC
Confidence 8888888888766533211110 1 146778888875
No 66
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.72 E-value=0.00027 Score=70.63 Aligned_cols=172 Identities=13% Similarity=0.161 Sum_probs=90.7
Q ss_pred ccccccchH-HHHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHH
Q 011568 140 RNLAGKRTG-KIVKEIWEDLMGD---------KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLI 209 (483)
Q Consensus 140 ~~~vGr~~~-~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 209 (483)
..++|.+.. +++.+++..+... -.+-|.|+|++|+|||+||+.+++.. ... .+.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~---f~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVP---FFHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCC---EEEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCC---eeeCCHHHHHHH-
Confidence 458888722 3344444444321 13458899999999999999999882 211 234443321110
Q ss_pred HHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------------ccccccCCC--CCCC
Q 011568 210 KLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP----------------LEEVGIPEP--NEEN 271 (483)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~ 271 (483)
. .. ........+........+.+|+||+++.... +..+...+. ....
T Consensus 89 -------------~-~g-~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 89 -------------F-VG-VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp -------------C-TT-HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred -------------H-hc-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 0 00 0112222233333223799999999964211 111111110 1123
Q ss_pred CcEEEEecCChhHhh-h-cC---C-ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCch
Q 011568 272 GCKLVITTRSCRVCR-S-MK---C-KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLP 337 (483)
Q Consensus 272 ~s~ilvTtR~~~v~~-~-~~---~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 337 (483)
+..||.||....... . .. . ..+.++..+.++-.+++..+......... . ....|++.+.|..
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~--v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAED--V--NLEIIAKRTPGFV 221 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT--C--CHHHHHHTCTTCC
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcch--h--hHHHHHHhcCCCc
Confidence 556666776543321 1 11 1 25788888888888888777654321110 1 1455788888876
No 67
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00063 Score=66.90 Aligned_cols=149 Identities=17% Similarity=0.138 Sum_probs=82.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK 241 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (483)
..+-|.++|++|+|||.||+.+++.+ .. ..+.++.+.-. .. .....+.....++....
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~---~~---~fi~vs~s~L~--------------sk--~vGesek~ir~lF~~Ar 299 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT---DA---TFIRVIGSELV--------------QK--YVGEGARMVRELFEMAR 299 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH---TC---EEEEEEGGGGC--------------CC--SSSHHHHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc---CC---CeEEEEhHHhh--------------cc--cCCHHHHHHHHHHHHHH
Confidence 45779999999999999999999983 22 23444433211 00 01122333444444444
Q ss_pred cCCeEEEEEeCCCCccC----------------ccccccCC--CCCCCCcEEEEecCChh-Hh---hhcC-C-ceEeccC
Q 011568 242 AKEKFVLILDDMWEAFP----------------LEEVGIPE--PNEENGCKLVITTRSCR-VC---RSMK-C-KQVEIEL 297 (483)
Q Consensus 242 ~~~~~LlVlDdv~~~~~----------------~~~l~~~l--~~~~~~s~ilvTtR~~~-v~---~~~~-~-~~~~l~~ 297 (483)
...+++|++|+++.... ...+...+ .....+..||.||.... +. ...+ . ..+.++.
T Consensus 300 ~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~l 379 (467)
T 4b4t_H 300 TKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSL 379 (467)
T ss_dssp HTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCC
T ss_pred hcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCC
Confidence 44899999999974210 00011111 11233445566664322 21 1111 2 3578888
Q ss_pred CChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCc
Q 011568 298 LSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRL 336 (483)
Q Consensus 298 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 336 (483)
-+.++-.++|+.+......... . ....|++.|.|.
T Consensus 380 Pd~~~R~~Ilk~~l~~~~l~~d--v--dl~~LA~~T~Gf 414 (467)
T 4b4t_H 380 PDLEGRANIFRIHSKSMSVERG--I--RWELISRLCPNS 414 (467)
T ss_dssp CCHHHHHHHHHHHHTTSCBCSS--C--CHHHHHHHCCSC
T ss_pred cCHHHHHHHHHHHhcCCCCCCC--C--CHHHHHHHCCCC
Confidence 8888889999877654422211 1 246688888885
No 68
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.70 E-value=0.00032 Score=64.40 Aligned_cols=174 Identities=13% Similarity=0.120 Sum_probs=87.8
Q ss_pred ccccccchHHHHH---HHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCC
Q 011568 140 RNLAGKRTGKIVK---EIWEDLMG---------DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLD 207 (483)
Q Consensus 140 ~~~vGr~~~~~~~---~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 207 (483)
..++|.+ ..++ +++.++.. ...+-+.|+|++|+||||||+.+++.+ ... .+.++.+.-.+
T Consensus 12 ~~i~G~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~i~~~~~~~ 83 (257)
T 1lv7_A 12 ADVAGCD--EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVP---FFTISGSDFVE 83 (257)
T ss_dssp GGSCSCH--HHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCC---EEEECSCSSTT
T ss_pred HHhcCcH--HHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCC---EEEEeHHHHHH
Confidence 4588887 3443 34444432 123458899999999999999999883 211 23343322110
Q ss_pred HHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------------ccccccCCC--CC
Q 011568 208 LIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP----------------LEEVGIPEP--NE 269 (483)
Q Consensus 208 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~----------------~~~l~~~l~--~~ 269 (483)
.. .... ......+.+......+.++++|+++.... ...+...+. ..
T Consensus 84 --------------~~-~~~~-~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 84 --------------MF-VGVG-ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp --------------SC-CCCC-HHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred --------------Hh-hhhh-HHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc
Confidence 00 0111 22223333333333678999999852110 000100000 11
Q ss_pred CCCcEEEEecCChh-Hhhhc----CC-ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCC-chHHHH
Q 011568 270 ENGCKLVITTRSCR-VCRSM----KC-KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGR-LPLAIV 341 (483)
Q Consensus 270 ~~~s~ilvTtR~~~-v~~~~----~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~ 341 (483)
..+..||.||.... +.... .. ..+.+...+.++-.+++........... ......++..+.| .+--+.
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~----~~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP----DIDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCT----TCCHHHHHHTCTTCCHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCc----cccHHHHHHHcCCCCHHHHH
Confidence 33455666665432 21111 11 3467777788888888877654331111 1113456677777 564444
No 69
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.69 E-value=5.7e-05 Score=66.71 Aligned_cols=95 Identities=24% Similarity=0.292 Sum_probs=53.2
Q ss_pred cccccchH--HHHHHHHHHhcCC----CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHH
Q 011568 141 NLAGKRTG--KIVKEIWEDLMGD----KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTE 214 (483)
Q Consensus 141 ~~vGr~~~--~~~~~l~~~L~~~----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 214 (483)
+|++.... ..++.+..++... ....+.|+|++|+|||+||+.+++.+. .....++|++++ ++...
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~~------~~~~~ 96 (202)
T 2w58_A 26 DVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYVP------ELFRE 96 (202)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEHH------HHHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEhH------HHHHH
Confidence 36654311 2344555555432 127899999999999999999999842 222346666643 34444
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 011568 215 IATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWE 255 (483)
Q Consensus 215 il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~ 255 (483)
+...+.. .... .+...+.. .-+|||||++.
T Consensus 97 ~~~~~~~-----~~~~----~~~~~~~~--~~~lilDei~~ 126 (202)
T 2w58_A 97 LKHSLQD-----QTMN----EKLDYIKK--VPVLMLDDLGA 126 (202)
T ss_dssp HHHC--------CCCH----HHHHHHHH--SSEEEEEEECC
T ss_pred HHHHhcc-----chHH----HHHHHhcC--CCEEEEcCCCC
Confidence 3332211 1111 22333443 23999999964
No 70
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.68 E-value=4.2e-05 Score=70.86 Aligned_cols=47 Identities=23% Similarity=0.283 Sum_probs=31.3
Q ss_pred ccccccchH-HHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 140 RNLAGKRTG-KIVKEIWEDLMG---------DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 140 ~~~vGr~~~-~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..++|.+.. +.+.+++.++.. ...+-+.|+|++|+|||+||+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 458888722 233333333321 12344789999999999999999988
No 71
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.61 E-value=0.00049 Score=68.92 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=34.1
Q ss_pred ccccccchHHHHH---HHHHHhcCCC--ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 140 RNLAGKRTGKIVK---EIWEDLMGDK--VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 140 ~~~vGr~~~~~~~---~l~~~L~~~~--~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..++|.+ +.++ .++.++..+. .+-+.++|++|+|||+||+.+++.+
T Consensus 37 ~~iiG~~--~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQE--NAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCH--HHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHH--HHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 5699988 4444 4444554432 3578999999999999999999884
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.47 E-value=5.2e-05 Score=81.18 Aligned_cols=144 Identities=15% Similarity=0.206 Sum_probs=76.4
Q ss_pred cccccchHHHHHHHHHHhcC-------C--CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHH
Q 011568 141 NLAGKRTGKIVKEIWEDLMG-------D--KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKL 211 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 211 (483)
.++|.+ ..++.+...+.. . ....+.++|++|+|||++|+.+++.+.. .-...+.++++.-...
T Consensus 492 ~viGq~--~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~---~~~~~i~i~~s~~~~~--- 563 (758)
T 3pxi_A 492 RVIGQD--EAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG---DEESMIRIDMSEYMEK--- 563 (758)
T ss_dssp TSCSCH--HHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS---CTTCEEEEEGGGGCSS---
T ss_pred cCcChH--HHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC---CCcceEEEechhcccc---
Confidence 488887 566666555531 1 1236999999999999999999988421 1223455665432110
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--CccccccCC-----CC------CCCCcEEEEe
Q 011568 212 QTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAF--PLEEVGIPE-----PN------EENGCKLVIT 278 (483)
Q Consensus 212 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~--~~~~l~~~l-----~~------~~~~s~ilvT 278 (483)
. ... ...+...+......+|+||+++... ....+...+ .. ......||+|
T Consensus 564 -----------~--~~~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 564 -----------H--STS----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp -----------C--CCC-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred -----------c--ccc----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 0 000 1112222333245699999997431 111111111 00 1234678888
Q ss_pred cCCh-----------------hHhhhcCCceEeccCCChHHHHHHHHHh
Q 011568 279 TRSC-----------------RVCRSMKCKQVEIELLSKKEALNLFIDK 310 (483)
Q Consensus 279 tR~~-----------------~v~~~~~~~~~~l~~L~~~ea~~Lf~~~ 310 (483)
|... .+...+. ..+.+.+++.++...++...
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~Rl~-~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINRID-EIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTTSS-EEEECC--CHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhhCC-eEEecCCCCHHHHHHHHHHH
Confidence 8631 1112221 35789999998888887665
No 73
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.38 E-value=0.00066 Score=71.92 Aligned_cols=149 Identities=13% Similarity=0.164 Sum_probs=81.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
.+-|.++|++|+|||+||+.+++.+ .. ..+.++.+. +.... ....+.....+.+....
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el---g~---~~~~v~~~~--------------l~sk~--~gese~~lr~lF~~A~~ 295 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET---GA---FFFLINGPE--------------IMSKL--AGESESNLRKAFEEAEK 295 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT---TC---EEEEEEHHH--------------HHSSC--TTHHHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---CC---eEEEEEhHH--------------hhccc--chHHHHHHHHHHHHHHH
Confidence 4679999999999999999999882 22 234444321 11111 11223334444444444
Q ss_pred CCeEEEEEeCCCCccC-------------ccccccCCC--CCCCCcEEEEecCC-hhHhhhcC----C-ceEeccCCChH
Q 011568 243 KEKFVLILDDMWEAFP-------------LEEVGIPEP--NEENGCKLVITTRS-CRVCRSMK----C-KQVEIELLSKK 301 (483)
Q Consensus 243 ~~~~LlVlDdv~~~~~-------------~~~l~~~l~--~~~~~s~ilvTtR~-~~v~~~~~----~-~~~~l~~L~~~ 301 (483)
..+++|+||+++.... ...+...+. ....+..||.||.. ..+...+. . ..+.+...+.+
T Consensus 296 ~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~ 375 (806)
T 3cf2_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375 (806)
T ss_dssp SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHH
T ss_pred cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHH
Confidence 4899999999974210 001111110 11223344555543 33222211 1 34888888888
Q ss_pred HHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCch
Q 011568 302 EALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLP 337 (483)
Q Consensus 302 ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 337 (483)
+-.++|..+........ ......|++.+.|.-
T Consensus 376 ~R~~IL~~~l~~~~~~~----dvdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 376 GRLEILQIHTKNMKLAD----DVDLEQVANETHGHV 407 (806)
T ss_dssp HHHHHHHHTCSSSEECT----TCCHHHHHHHCCSCC
T ss_pred HHHHHHHHHhcCCCCCc----ccCHHHHHHhcCCCC
Confidence 88899887765442211 112567888888864
No 74
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.29 E-value=0.0023 Score=65.44 Aligned_cols=45 Identities=29% Similarity=0.352 Sum_probs=31.6
Q ss_pred cccccchHHHHHHHHHHh------cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 141 NLAGKRTGKIVKEIWEDL------MGDKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.++|.+ +..+.+.+.+ .......+.|+|++|+||||||+.++..+
T Consensus 82 di~G~~--~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 82 EHHGLE--KVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HCSSCH--HHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhccHH--HHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 467765 4444443322 12245789999999999999999999883
No 75
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.22 E-value=0.00027 Score=66.23 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=46.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEe--CCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTV--SQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRML 240 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 240 (483)
.+++.|+|++|+|||+||.+++.. .. ..++|++. ....+. . ..+.+.....+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-~G-----~~VlyIs~~~eE~v~~---------------~-~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-LG-----GKDKYATVRFGEPLSG---------------Y-NTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-HH-----TTSCCEEEEBSCSSTT---------------C-BCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-CC-----CCEEEEEecchhhhhh---------------h-hcCHHHHHHHHHHHH
Confidence 367889999999999999999875 11 12456666 222110 0 034556666667777
Q ss_pred hcCCeEEEEEeCCCCc
Q 011568 241 KAKEKFVLILDDMWEA 256 (483)
Q Consensus 241 ~~~~~~LlVlDdv~~~ 256 (483)
.. .+ +||+|++...
T Consensus 181 ~~-~~-LLVIDsI~aL 194 (331)
T 2vhj_A 181 LQ-HR-VIVIDSLKNV 194 (331)
T ss_dssp HH-CS-EEEEECCTTT
T ss_pred hh-CC-EEEEeccccc
Confidence 76 55 9999998753
No 76
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.20 E-value=0.0016 Score=62.00 Aligned_cols=90 Identities=12% Similarity=0.225 Sum_probs=57.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCC----CCCeEEEEEeCCCCCHHHHHHHHHHHhcccC---------CCCCCH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPN----KFNDVIWVTVSQPLDLIKLQTEIATALKQSL---------PENEDK 229 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~---------~~~~~~ 229 (483)
..++.|+|++|+|||+||.+++... .... .-..++|++....++..++.. ++..++... ....+.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~-~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNV-QLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 4799999999999999999998762 1111 023689999888777666543 345554321 011222
Q ss_pred H---HHHHHHHHHHhc-CCeEEEEEeCCC
Q 011568 230 V---SRAGRLLRMLKA-KEKFVLILDDMW 254 (483)
Q Consensus 230 ~---~~~~~l~~~l~~-~~~~LlVlDdv~ 254 (483)
+ .....+...+.. .+.-+||+|.+.
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 2 234445555543 478899999986
No 77
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.19 E-value=0.0021 Score=57.15 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=51.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHh-----------cccCCCC-CCHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATAL-----------KQSLPEN-EDKV 230 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l-----------~~~~~~~-~~~~ 230 (483)
..++.|+|++|+|||||+..++.. . -..++|++.....+..++.. +...+ ....... ....
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~-~-----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLL-S-----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH-H-----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH-c-----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 469999999999999999999872 1 13588888776555554443 32222 1111111 1112
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCC
Q 011568 231 SRAGRLLRMLKAKEKFVLILDDMWE 255 (483)
Q Consensus 231 ~~~~~l~~~l~~~~~~LlVlDdv~~ 255 (483)
.....+...+.. ++-+||||.+..
T Consensus 93 ~~~~~~~~l~~~-~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDS-NFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCT-TEEEEEEECCCC
T ss_pred HHHHHHHHHhhc-CCCEEEEcCcHH
Confidence 233333333333 588999999864
No 78
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.16 E-value=0.0012 Score=63.39 Aligned_cols=86 Identities=13% Similarity=0.162 Sum_probs=57.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCC-----CCCCHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLP-----ENEDKVSRAGRLL 237 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 237 (483)
.+++.|+|++|+|||||+.+++..+... =..++|++....++.. .++.++.... ...+.++....+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4799999999999999999998874321 1247888877766654 4555554221 1234555555555
Q ss_pred HHHhcCCeEEEEEeCCCCc
Q 011568 238 RMLKAKEKFVLILDDMWEA 256 (483)
Q Consensus 238 ~~l~~~~~~LlVlDdv~~~ 256 (483)
..+...+.-++|+|.+...
T Consensus 133 ~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHHTSCCSEEEEECTTTC
T ss_pred HHhhhcCCCeEEehHhhhh
Confidence 5555446679999998643
No 79
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.16 E-value=0.0023 Score=61.31 Aligned_cols=92 Identities=14% Similarity=0.181 Sum_probs=57.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCC----CCCeEEEEEeCCCCCHHHHHHHHHHHhcccC------------CC
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPN----KFNDVIWVTVSQPLDLIKLQTEIATALKQSL------------PE 225 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~------------~~ 225 (483)
...++.|+|++|+||||||.+++... .... .-..++|++....++..++.. ++..++... ..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCC
Confidence 34799999999999999999998762 1111 124689999888777665543 344444321 11
Q ss_pred CCCHHHHHHHHHHHHhc--CCeEEEEEeCCCC
Q 011568 226 NEDKVSRAGRLLRMLKA--KEKFVLILDDMWE 255 (483)
Q Consensus 226 ~~~~~~~~~~l~~~l~~--~~~~LlVlDdv~~ 255 (483)
..........+...+.. .+.-+||+|.+..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 11222333444455543 3778999999853
No 80
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.16 E-value=0.0016 Score=58.86 Aligned_cols=91 Identities=15% Similarity=0.091 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCC----CCCeEEEEEeCCCCCHHHHHHHHHHHhcccC---------CCCCCH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPN----KFNDVIWVTVSQPLDLIKLQTEIATALKQSL---------PENEDK 229 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~---------~~~~~~ 229 (483)
..++.|+|++|+|||||+..++... .... .-..++|++....++..++. .++..++... ....+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 4799999999999999999998751 1111 12468899877655544433 3444444321 011222
Q ss_pred HH---HHHHHHHHHhcCCeEEEEEeCCCC
Q 011568 230 VS---RAGRLLRMLKAKEKFVLILDDMWE 255 (483)
Q Consensus 230 ~~---~~~~l~~~l~~~~~~LlVlDdv~~ 255 (483)
.+ ....+...+...+.-+||||++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 22 233344555444788999999864
No 81
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.13 E-value=0.0046 Score=62.11 Aligned_cols=169 Identities=14% Similarity=0.147 Sum_probs=88.0
Q ss_pred ccccccchH-HHHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHH
Q 011568 140 RNLAGKRTG-KIVKEIWEDLMGD---------KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLI 209 (483)
Q Consensus 140 ~~~vGr~~~-~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 209 (483)
..++|.+.. ..+.++...+... -.+-+.|+|++|+|||+||+.++... . ...+.++.+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~---~~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---R---VPFITASGSDFVE-- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---T---CCEEEEEGGGGTS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---C---CCEEEEehhHHHH--
Confidence 458888722 3344455554331 12348999999999999999999882 2 2234444332110
Q ss_pred HHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc---CCeEEEEEeCCCCccC----------------ccccccCCCC--
Q 011568 210 KLQTEIATALKQSLPENEDKVSRAGRLLRMLKA---KEKFVLILDDMWEAFP----------------LEEVGIPEPN-- 268 (483)
Q Consensus 210 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~---~~~~LlVlDdv~~~~~----------------~~~l~~~l~~-- 268 (483)
. ........+...++. ..+.++++|+++.... +..+...+..
T Consensus 103 ------------~-----~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 103 ------------M-----FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp ------------S-----CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred ------------h-----hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 0 000111223333332 2468999999963210 0111111111
Q ss_pred CCCCcEEEEecCChhHhhh-c----CC-ceEeccCCChHHHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCch
Q 011568 269 EENGCKLVITTRSCRVCRS-M----KC-KQVEIELLSKKEALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLP 337 (483)
Q Consensus 269 ~~~~s~ilvTtR~~~v~~~-~----~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 337 (483)
......++.||........ . .. ..+.++..+.++-.+++..++....... ......|+..+.|+.
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~----dv~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE----DVDLALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCC----SSTTHHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCCh----HHHHHHHHHhcCCCC
Confidence 1223445556655443221 1 11 3478888888888888887654321111 112456777888875
No 82
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.09 E-value=0.0017 Score=60.58 Aligned_cols=87 Identities=8% Similarity=-0.007 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCC-----CCCHHHHHHHHHH
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPE-----NEDKVSRAGRLLR 238 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-----~~~~~~~~~~l~~ 238 (483)
.++.|.|++|+|||||+.+++....+. ..=..++|++....++.. .+++++...+. ..+.++..-.+.+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~-g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQ-YPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHH-CTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 378999999999999999988773221 112358999988877753 36667654321 2234443122333
Q ss_pred HH---hcCCeEEEEEeCCCCc
Q 011568 239 ML---KAKEKFVLILDDMWEA 256 (483)
Q Consensus 239 ~l---~~~~~~LlVlDdv~~~ 256 (483)
.+ ...++-|||+|.+...
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHhhccCceEEEEeccccc
Confidence 33 4457899999998654
No 83
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.08 E-value=0.00056 Score=57.04 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=29.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ 204 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 204 (483)
....+.|+|+.|+|||||++.+++.+.. ..+ .+++++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCC-cEEEEcHHH
Confidence 4578999999999999999999998432 122 256666543
No 84
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.02 E-value=0.00091 Score=71.60 Aligned_cols=45 Identities=22% Similarity=0.325 Sum_probs=33.0
Q ss_pred cccccchHHHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 141 NLAGKRTGKIVKEIWEDLMG---------DKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.++|.+ ..++.+...+.. .....+.++|++|+|||++|+.+.+.+
T Consensus 459 ~v~g~~--~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 459 LVFGQD--KAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TSCSCH--HHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hccCHH--HHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 477877 556555554421 123479999999999999999999883
No 85
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.02 E-value=0.0022 Score=68.78 Aligned_cols=150 Identities=14% Similarity=0.200 Sum_probs=77.9
Q ss_pred ccccccchHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCC
Q 011568 140 RNLAGKRTGKIVKEIWEDLM-------------GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPL 206 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 206 (483)
..++|.+ +.++++.+++. -.....|.|+|++|+||||||+.++.. .... .+.++.+.
T Consensus 204 ~di~G~~--~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~---l~~~---~i~v~~~~-- 273 (806)
T 1ypw_A 204 DDVGGCR--KQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE---TGAF---FFLINGPE-- 273 (806)
T ss_dssp GGCCSCS--GGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT---TTCE---EEEEEHHH--
T ss_pred HHhCChH--HHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH---cCCc---EEEEEchH--
Confidence 3578877 45555554442 123467999999999999999999887 2222 23343211
Q ss_pred CHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------ccccccCCC--CCCC
Q 011568 207 DLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEKFVLILDDMWEAFP-------------LEEVGIPEP--NEEN 271 (483)
Q Consensus 207 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlVlDdv~~~~~-------------~~~l~~~l~--~~~~ 271 (483)
+.... ..........+.+......+.++++|+++.... ...+...+. ....
T Consensus 274 ------------l~~~~--~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~ 339 (806)
T 1ypw_A 274 ------------IMSKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp ------------HSSSS--TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTS
T ss_pred ------------hhhhh--hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccc
Confidence 11100 011122223333333222789999999953211 011111110 1122
Q ss_pred CcEEEEecCChh-HhhhcC----C-ceEeccCCChHHHHHHHHHhhCC
Q 011568 272 GCKLVITTRSCR-VCRSMK----C-KQVEIELLSKKEALNLFIDKVGS 313 (483)
Q Consensus 272 ~s~ilvTtR~~~-v~~~~~----~-~~~~l~~L~~~ea~~Lf~~~~~~ 313 (483)
+..+|.||.... +..... . ..+.+...+.++-.+++...+..
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~ 387 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhc
Confidence 345555554422 211111 1 23678888889988998876543
No 86
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.01 E-value=0.0016 Score=61.86 Aligned_cols=90 Identities=14% Similarity=0.200 Sum_probs=57.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCC------------CCC--CeEEEEEeCCCCCHHHHHHHHHHHhcccC-----
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKP------------NKF--NDVIWVTVSQPLDLIKLQTEIATALKQSL----- 223 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~----- 223 (483)
..++.|+|++|+|||+||.+++... ... +.. ..++|++....++..++.. ++..++...
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~-~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNL-QNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHT-TCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-hccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 4799999999999999999998751 111 111 4689999888777666653 345554321
Q ss_pred ----CCCCCHH---HHHHHHHHHHhc-CCeEEEEEeCCC
Q 011568 224 ----PENEDKV---SRAGRLLRMLKA-KEKFVLILDDMW 254 (483)
Q Consensus 224 ----~~~~~~~---~~~~~l~~~l~~-~~~~LlVlDdv~ 254 (483)
....+.+ .....+...+.. .+.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0112222 234445555554 467799999985
No 87
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.00 E-value=0.0018 Score=62.45 Aligned_cols=85 Identities=15% Similarity=0.175 Sum_probs=56.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCC-----CCCCHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLP-----ENEDKVSRAGRLL 237 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 237 (483)
..++.|.|++|+||||||.+++...... -..++|++....++.. .+..++.... ...+.++....+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 4689999999999999999998773221 2368999988766643 2444543211 1234555555555
Q ss_pred HHHhcCCeEEEEEeCCCC
Q 011568 238 RMLKAKEKFVLILDDMWE 255 (483)
Q Consensus 238 ~~l~~~~~~LlVlDdv~~ 255 (483)
......+.-+||+|.+..
T Consensus 146 ~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHTTTCCSEEEEECTTT
T ss_pred HHHhcCCCCEEEEeChHH
Confidence 555444567999999853
No 88
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.96 E-value=0.002 Score=61.89 Aligned_cols=85 Identities=13% Similarity=0.117 Sum_probs=54.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCC-----CCCCHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLP-----ENEDKVSRAGRLL 237 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 237 (483)
..++.|+|++|+||||||.+++...... =..++|++....++.. ....++.... ...+.++....+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4799999999999999999998763221 1358899988766543 2445553211 1223444444444
Q ss_pred HHHhcCCeEEEEEeCCCC
Q 011568 238 RMLKAKEKFVLILDDMWE 255 (483)
Q Consensus 238 ~~l~~~~~~LlVlDdv~~ 255 (483)
......+.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 444444677999999864
No 89
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.84 E-value=0.002 Score=61.86 Aligned_cols=85 Identities=14% Similarity=0.173 Sum_probs=53.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCC-----CCCCHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLP-----ENEDKVSRAGRLL 237 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 237 (483)
..++.|.|++|+||||||.+++...... -..++|++....++.. .+..++.... ...+.++....+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 4799999999999999999998773221 1358899988766643 2344543211 1123344444443
Q ss_pred HHHhcCCeEEEEEeCCCC
Q 011568 238 RMLKAKEKFVLILDDMWE 255 (483)
Q Consensus 238 ~~l~~~~~~LlVlDdv~~ 255 (483)
......+.-+||+|.+..
T Consensus 135 ~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHTCCSEEEEECGGG
T ss_pred HHHhccCCCEEEEcCHHH
Confidence 333333567999999853
No 90
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.84 E-value=0.00067 Score=63.61 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...+.++|++|+|||+||+.+++.+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999999983
No 91
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.83 E-value=0.0027 Score=58.79 Aligned_cols=125 Identities=14% Similarity=0.138 Sum_probs=66.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCe
Q 011568 166 IGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEK 245 (483)
Q Consensus 166 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 245 (483)
+.|+|++|+||||||+.++..+ .. ..+.++...-.+. ...........+.+......+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~---~~---~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES---GL---NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT---TC---EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCS
T ss_pred EEEECCCCCcHHHHHHHHHHHc---CC---CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999872 11 2444443221110 000011222333333322268
Q ss_pred EEEEEeCCCCccCc-------------cccccCCCCC--CCCcEEEEecCChhHhhh----c-CC-ceEeccCCChHHHH
Q 011568 246 FVLILDDMWEAFPL-------------EEVGIPEPNE--ENGCKLVITTRSCRVCRS----M-KC-KQVEIELLSKKEAL 304 (483)
Q Consensus 246 ~LlVlDdv~~~~~~-------------~~l~~~l~~~--~~~s~ilvTtR~~~v~~~----~-~~-~~~~l~~L~~~ea~ 304 (483)
+++++|+++..... ..+...+..+ .....++.+|....+... . .. ..+.++..+.++-.
T Consensus 105 ~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~ 184 (274)
T 2x8a_A 105 CVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRL 184 (274)
T ss_dssp EEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHH
T ss_pred CeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHH
Confidence 99999999742110 0010111111 123344556655443221 1 11 34788888888888
Q ss_pred HHHHHhhC
Q 011568 305 NLFIDKVG 312 (483)
Q Consensus 305 ~Lf~~~~~ 312 (483)
++|+....
T Consensus 185 ~il~~~~~ 192 (274)
T 2x8a_A 185 AILKTITK 192 (274)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 88887653
No 92
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.80 E-value=0.0012 Score=62.28 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCC---CceEEEEEcCCCCcHHHHHHHHHhhhc-cCCCCCCeEEEEEe
Q 011568 150 IVKEIWEDLMGD---KVSKIGVWGMGGIGKTTIMSNINNKLH-EKPNKFNDVIWVTV 202 (483)
Q Consensus 150 ~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~~f~~~~wv~~ 202 (483)
.+..+.+++..- ....+.|+|++|+|||+||..+++.+. .. . ..+.++++
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~--g-~~v~~~~~ 189 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK--G-VSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS--C-CCEEEEEH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc--C-CcEEEEEH
Confidence 344455555431 247889999999999999999999843 22 2 23555654
No 93
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.79 E-value=0.00099 Score=72.20 Aligned_cols=45 Identities=16% Similarity=0.375 Sum_probs=33.0
Q ss_pred cccccchHHHHHHHHHHhcC-------C--CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 141 NLAGKRTGKIVKEIWEDLMG-------D--KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.++|.+ ..++.+...+.. . ....+.|+|++|+|||++|+.+.+.+
T Consensus 559 ~viG~~--~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQD--EAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCH--HHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcH--HHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 468887 556665554421 1 23579999999999999999999884
No 94
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.75 E-value=0.0071 Score=57.92 Aligned_cols=155 Identities=10% Similarity=-0.010 Sum_probs=92.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH-
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRM- 239 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~- 239 (483)
.-.++..++|+.|.||++.+..+.+.+. ...|+....+.+....++.++... +...
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~---------------------~~~~p 72 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIFSL---------------------CQAMS 72 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHHHH---------------------HHHHH
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHHHH---------------------hcCcC
Confidence 4467999999999999999999988742 123433222233333333333222 1111
Q ss_pred HhcCCeEEEEEeCCCC-c--cCccccccCCCCCCCCcEEEEecCC-------hhHhhhc--CCceEeccCCChHHHHHHH
Q 011568 240 LKAKEKFVLILDDMWE-A--FPLEEVGIPEPNEENGCKLVITTRS-------CRVCRSM--KCKQVEIELLSKKEALNLF 307 (483)
Q Consensus 240 l~~~~~~LlVlDdv~~-~--~~~~~l~~~l~~~~~~s~ilvTtR~-------~~v~~~~--~~~~~~l~~L~~~ea~~Lf 307 (483)
+-+ ++-++|+|+++. . ...+.+...+....+++.+|++|.. ..+.... .+..++..+++.++....+
T Consensus 73 lf~-~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 73 LFA-SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWV 151 (343)
T ss_dssp HCC-SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHH
T ss_pred Ccc-CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHH
Confidence 223 677889999865 2 2333343333322446666665532 2333332 2346899999999999888
Q ss_pred HHhhCCCCCCCCCcchHHHHHHHHHcCCchHHHHH
Q 011568 308 IDKVGSSILQVPTLNEGIINEVVEECGRLPLAIVT 342 (483)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 342 (483)
...+....... .++.+..+++.++|.+..+..
T Consensus 152 ~~~~~~~g~~i---~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 152 AARAKQLNLEL---DDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHTTCEE---CHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHcCCCC---CHHHHHHHHHHhchHHHHHHH
Confidence 77764332222 457788899999998877654
No 95
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.66 E-value=0.002 Score=56.92 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=30.1
Q ss_pred HHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 150 IVKEIWEDLMG--DKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 150 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.+++|.+.+.. ....+|+|+|+.|+|||||++.+...+
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45566666653 456799999999999999999998874
No 96
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.65 E-value=0.0037 Score=55.96 Aligned_cols=39 Identities=26% Similarity=0.179 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ 204 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 204 (483)
..+++|.|++|+|||||+..++...... -..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~ 61 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEE 61 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEccc
Confidence 4689999999999999999998663221 12466766543
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.63 E-value=0.0081 Score=53.62 Aligned_cols=92 Identities=17% Similarity=0.194 Sum_probs=50.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcc--CCC-CCCeEEEEEeCCCCCHHHHHHHHHHHhcccCC---------CCCCH-
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHE--KPN-KFNDVIWVTVSQPLDLIKLQTEIATALKQSLP---------ENEDK- 229 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~-~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~~~~- 229 (483)
..+++|+|++|+|||||++.++..... -.. .-..++|+.......... +..+...++.... .....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSN 103 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCChH
Confidence 479999999999999999999874211 001 133478887655433322 2233333322100 01111
Q ss_pred --HHHHHHHHHHHh-----cCCeEEEEEeCCCC
Q 011568 230 --VSRAGRLLRMLK-----AKEKFVLILDDMWE 255 (483)
Q Consensus 230 --~~~~~~l~~~l~-----~~~~~LlVlDdv~~ 255 (483)
......+...+. ..++-+||||....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 104 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 112233444444 34788999998753
No 98
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.63 E-value=0.0071 Score=58.98 Aligned_cols=90 Identities=11% Similarity=0.167 Sum_probs=53.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCC----CCCCeEEEEEeCCCCCHHHHHHHHHHHhcccC---------CCCCCH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKP----NKFNDVIWVTVSQPLDLIKLQTEIATALKQSL---------PENEDK 229 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~---------~~~~~~ 229 (483)
..++.|+|++|+|||||+..++-... .. ..-..++|++....+....+ ..+.+.++... ....+.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~-~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQ-IPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTT-SCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhc-cCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 47999999999999999998764311 11 12345889887766655443 33555554321 011122
Q ss_pred H---HHHHHHHHHHhcCCeEEEEEeCCC
Q 011568 230 V---SRAGRLLRMLKAKEKFVLILDDMW 254 (483)
Q Consensus 230 ~---~~~~~l~~~l~~~~~~LlVlDdv~ 254 (483)
. .....+...+...+.-+||+|.+.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 2 233333444444478899999875
No 99
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.62 E-value=0.01 Score=56.07 Aligned_cols=62 Identities=6% Similarity=0.045 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 011568 150 IVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 150 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
.++.+..-+ ....++.|.|.+|+||||||.+++.... ..+ ..++|++.. .+..++...++..
T Consensus 57 ~LD~~lgGl--~~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 57 ELDRMTYGY--KRRNFVLIAARPSMGKTAFALKQAKNMS-DND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp HHHHHHSSB--CTTCEEEEECCTTSSHHHHHHHHHHHHH-TTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred HHHhhcCCC--CCCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 566654212 2347999999999999999999987732 222 568888865 3455555555443
No 100
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.60 E-value=0.012 Score=57.78 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+|.++|++|+||||++..++..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998874
No 101
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.44 E-value=0.0097 Score=55.60 Aligned_cols=87 Identities=16% Similarity=0.183 Sum_probs=48.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRML 240 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 240 (483)
...+++|+|++|+||||++..++..+....+ ..+..+.... .....+.+....+..+.+.....+.......+. .+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LF 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-Hh
Confidence 3579999999999999999999887432122 2355555433 233444444444434433222223333333333 33
Q ss_pred hcCCeEEEEEeCC
Q 011568 241 KAKEKFVLILDDM 253 (483)
Q Consensus 241 ~~~~~~LlVlDdv 253 (483)
. +.=++|+|-.
T Consensus 181 -~-~~dlvIiDT~ 191 (296)
T 2px0_A 181 -S-EYDHVFVDTA 191 (296)
T ss_dssp -G-GSSEEEEECC
T ss_pred -c-CCCEEEEeCC
Confidence 3 4568889944
No 102
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.31 E-value=0.011 Score=55.45 Aligned_cols=88 Identities=19% Similarity=0.178 Sum_probs=49.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHhcccC---CCCCCHHHH-HHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQP-LDLIKLQTEIATALKQSL---PENEDKVSR-AGRLL 237 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~---~~~~~~~~~-~~~l~ 237 (483)
..+|.|+|++|+||||++..++..+... -..+.++..... ....+-+...++.++... ....+.... ...+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 5799999999999999999999874321 123555554321 112222344455544321 112233322 23445
Q ss_pred HHHhcCCeEEEEEeCCC
Q 011568 238 RMLKAKEKFVLILDDMW 254 (483)
Q Consensus 238 ~~l~~~~~~LlVlDdv~ 254 (483)
..+.. +.-++|+|..-
T Consensus 181 ~a~~~-~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALAR-NKDVVIIDTAG 196 (306)
T ss_dssp HHHHT-TCSEEEEEECC
T ss_pred HHHhc-CCCEEEEECCC
Confidence 54555 55588889653
No 103
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.28 E-value=0.0042 Score=59.48 Aligned_cols=92 Identities=13% Similarity=0.153 Sum_probs=49.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCC-HHHHHHHHHHHhcccCCCCCCHHHHH------
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLD-LIKLQTEIATALKQSLPENEDKVSRA------ 233 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~~~~~~~~~~~------ 233 (483)
.....++|+|++|+|||||++.+.+.+.+....+. ++++-+++... +.++.+.+-..+-... .+.......
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~~~~~~~~~~vV~at-adep~~~r~~~a~~a 249 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTEMQRLVKGEVVAST-FDEPASRHVQVAEMV 249 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHHHHHTTCSSEEEEEC-TTSCHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHHHHHHHhCeEEEEeC-CCCCHHHHHHHHHHH
Confidence 34578999999999999999998887433223343 34566765432 3333322200000011 111211111
Q ss_pred HHHHHHHh-cCCeEEEEEeCCC
Q 011568 234 GRLLRMLK-AKEKFVLILDDMW 254 (483)
Q Consensus 234 ~~l~~~l~-~~~~~LlVlDdv~ 254 (483)
-.+.+.+. .++.+||++||+.
T Consensus 250 lt~AEyfrd~G~dVLil~DslT 271 (422)
T 3ice_A 250 IEKAKRLVEHKKDVIILLDSIT 271 (422)
T ss_dssp HHHHHHHHHTSCEEEEEEECHH
T ss_pred HHHHHHHHhcCCCEEEEEeCch
Confidence 11223333 2599999999985
No 104
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.28 E-value=0.011 Score=53.31 Aligned_cols=39 Identities=18% Similarity=0.090 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ 204 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 204 (483)
..++.|.|++|+|||||+.+++...... =..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccC
Confidence 4689999999999999999887663221 13577887654
No 105
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.28 E-value=0.0024 Score=54.71 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+|.|.|++|+||||+|+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999987
No 106
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.25 E-value=0.0025 Score=54.16 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.+|+|.|++|+||||+++.+...+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998873
No 107
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.23 E-value=0.0042 Score=54.51 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 149 KIVKEIWEDLMG---DKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 149 ~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+.++.+.+.+.. ....+|+|.|++|+|||||++.+...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455666666654 345799999999999999999998763
No 108
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.23 E-value=0.0025 Score=55.10 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+.|.|+||+|+|||||++.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999999877
No 109
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.19 E-value=0.019 Score=56.36 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLH 188 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 188 (483)
..+|.++|++|+||||++..++..+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999988753
No 110
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.19 E-value=0.3 Score=48.50 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 011568 150 IVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIA 216 (483)
Q Consensus 150 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 216 (483)
.++.+..-+. ...++.|.|.+|+|||||+..++....... =..++|++... +..++...++
T Consensus 192 ~LD~~~gGl~--~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 192 ELDRMTSGFQ--RSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp HHHHHHSSBC--TTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESSS--CHHHHHHHHH
T ss_pred HHHhhcCCCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECCC--CHHHHHHHHH
Confidence 5566542222 346999999999999999999988742211 12577877654 3445555443
No 111
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.17 E-value=0.0026 Score=54.14 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+|+|.|++|+||||+|+.+ ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47999999999999999999 55
No 112
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.17 E-value=0.021 Score=54.25 Aligned_cols=61 Identities=15% Similarity=0.118 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 011568 150 IVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIAT 217 (483)
Q Consensus 150 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 217 (483)
.++++..-+ ....++.|.|.+|+||||||..++..... .=..++|++.. .+..++...++.
T Consensus 35 ~LD~~~gGl--~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE--ms~~ql~~Rlls 95 (338)
T 4a1f_A 35 QLDNYTSGF--NKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE--MSAEQLALRALS 95 (338)
T ss_dssp HHHHHHCSB--CTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS--SCHHHHHHHHHH
T ss_pred HHHHHhcCC--CCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC--CCHHHHHHHHHH
Confidence 566654322 23469999999999999999999887432 12357777764 345566555544
No 113
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.08 E-value=0.0033 Score=54.09 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|++|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999876
No 114
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.07 E-value=0.0037 Score=54.22 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 478999999999999999999765
No 115
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.07 E-value=0.004 Score=54.55 Aligned_cols=29 Identities=34% Similarity=0.486 Sum_probs=25.1
Q ss_pred cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 159 MGDKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 159 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
......+|+|+|++|+|||||++.+...+
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34456899999999999999999999874
No 116
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.07 E-value=0.019 Score=54.96 Aligned_cols=92 Identities=18% Similarity=0.255 Sum_probs=52.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCC----CeEEEEEeCCCCCHHHHHHHHHHHhcccC---------CCCCC
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKF----NDVIWVTVSQPLDLIKLQTEIATALKQSL---------PENED 228 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~il~~l~~~~---------~~~~~ 228 (483)
...++.|+|++|+|||||+..++... ...... ..++|++....+...++ ..+...++... ....+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~-~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-ccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 35799999999999999999998772 111111 24589887665433332 22333322110 00011
Q ss_pred ---HHHHHHHHHHHHhc-----CCeEEEEEeCCCC
Q 011568 229 ---KVSRAGRLLRMLKA-----KEKFVLILDDMWE 255 (483)
Q Consensus 229 ---~~~~~~~l~~~l~~-----~~~~LlVlDdv~~ 255 (483)
.......+...+.. .++-+||+|.+-.
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 12233333444432 3788999999864
No 117
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.06 E-value=0.0036 Score=53.61 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINN 185 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~ 185 (483)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 118
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.03 E-value=0.0037 Score=54.74 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+|.|+|++|+||||+++.+...+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999873
No 119
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.03 E-value=0.0033 Score=53.55 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+|+|+|++|+|||||++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999887
No 120
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.02 E-value=0.013 Score=67.78 Aligned_cols=85 Identities=14% Similarity=0.173 Sum_probs=57.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCC-----CCCCHHHHHHHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLP-----ENEDKVSRAGRL 236 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 236 (483)
..++|.|+|++|+|||+||.++.... .. .=..++|+++....+... ++.++.+.. .....+.....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea-~~--~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA-QR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH-HT--TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HH--cCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 45799999999999999999998872 22 223478888887766555 445553221 122344555555
Q ss_pred HHHHhcCCeEEEEEeCCC
Q 011568 237 LRMLKAKEKFVLILDDMW 254 (483)
Q Consensus 237 ~~~l~~~~~~LlVlDdv~ 254 (483)
.+.....+..+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 555555578899999985
No 121
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.99 E-value=0.004 Score=53.68 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.+.|.|+|++|+||||+++.+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999999873
No 122
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.96 E-value=0.0045 Score=54.27 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....+|+|+|+.|+|||||++.+...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 34579999999999999999999887
No 123
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.95 E-value=0.014 Score=57.61 Aligned_cols=89 Identities=19% Similarity=0.302 Sum_probs=50.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhccc------CCCCCCHHHH----
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPL-DLIKLQTEIATALKQS------LPENEDKVSR---- 232 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~------~~~~~~~~~~---- 232 (483)
..++|+|++|+|||||+..+....... .-..++++.+++.. ...+++.++...-... ....+.....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~--~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE--HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH--TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc--cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 468999999999999999998773211 12334666666543 3455555554320000 0011111111
Q ss_pred --HHHHHHHHhc--CCeEEEEEeCCC
Q 011568 233 --AGRLLRMLKA--KEKFVLILDDMW 254 (483)
Q Consensus 233 --~~~l~~~l~~--~~~~LlVlDdv~ 254 (483)
.-.+.+.+.. ++++||++||+.
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1234444443 589999999985
No 124
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.93 E-value=0.0038 Score=59.89 Aligned_cols=46 Identities=17% Similarity=0.313 Sum_probs=33.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..++|.+ ..+..+...+......-+.|+|++|+|||+||+.+++.+
T Consensus 24 ~~i~G~~--~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQE--DMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCH--HHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChH--HHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 4589987 444444444433333459999999999999999999873
No 125
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.89 E-value=0.0053 Score=54.19 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....+|+|+|++|+|||||++.+...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 34579999999999999999999877
No 126
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.89 E-value=0.0047 Score=53.49 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.+|.|.|++|+||||+++.+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999884
No 127
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.88 E-value=0.004 Score=54.63 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+|+|.|++|+||||+|+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998873
No 128
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.86 E-value=0.0046 Score=58.91 Aligned_cols=42 Identities=14% Similarity=0.313 Sum_probs=34.5
Q ss_pred cccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 141 NLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.++|++ +.++.+...+..+ .-+.++|++|+|||+||+.+.+.
T Consensus 28 ~i~g~~--~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 28 VVVGQK--YMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TCCSCH--HHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHH
T ss_pred ceeCcH--HHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHH
Confidence 388887 6777777666554 46889999999999999999987
No 129
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.83 E-value=0.054 Score=53.38 Aligned_cols=90 Identities=24% Similarity=0.241 Sum_probs=48.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcccC---CCCCCHHHHHHHHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQSL---PENEDKVSRAGRLL 237 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~---~~~~~~~~~~~~l~ 237 (483)
..++|.|+|.+|+||||++..++..+... ... .+..+.+.. .....+.+.......+.+. ....+.........
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~-~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l 176 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK-HKK-KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAAL 176 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT-SCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh-cCC-eEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHH
Confidence 35799999999999999999999885332 122 355555543 2333333333333333321 11234444434444
Q ss_pred HHHhcCCeEEEEEeCC
Q 011568 238 RMLKAKEKFVLILDDM 253 (483)
Q Consensus 238 ~~l~~~~~~LlVlDdv 253 (483)
..+.....=++|+|-.
T Consensus 177 ~~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 177 KEAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHhCCCCEEEEECC
Confidence 4444212335666764
No 130
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.80 E-value=0.011 Score=53.89 Aligned_cols=146 Identities=12% Similarity=0.127 Sum_probs=72.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCe
Q 011568 166 IGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAKEK 245 (483)
Q Consensus 166 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 245 (483)
+.|+|++|+|||||++.++..+ . ...+.++.. ++ ... . ..........+.+......+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~---~---~~~i~~~~~------~~----~~~----~--~~~~~~~i~~~~~~~~~~~~ 109 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA---R---VPFITASGS------DF----VEM----F--VGVGAARVRDLFETAKRHAP 109 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT---T---CCEEEEEHH------HH----HHS----C--TTHHHHHHHHHHHHHTTSSS
T ss_pred EEEECCCCCCHHHHHHHHHHHh---C---CCEEEeeHH------HH----HHH----H--hhHHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999882 2 123333321 11 100 0 00111222333444332257
Q ss_pred EEEEEeCCCCccC----------------ccccccCCCCCC--CCcEEEEecCChhHhhh-c----CC-ceEeccCCChH
Q 011568 246 FVLILDDMWEAFP----------------LEEVGIPEPNEE--NGCKLVITTRSCRVCRS-M----KC-KQVEIELLSKK 301 (483)
Q Consensus 246 ~LlVlDdv~~~~~----------------~~~l~~~l~~~~--~~s~ilvTtR~~~v~~~-~----~~-~~~~l~~L~~~ 301 (483)
.++++|+++.... ...+...+..+. ....++.||........ . .. ..+.++..+.+
T Consensus 110 ~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~ 189 (254)
T 1ixz_A 110 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 189 (254)
T ss_dssp EEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHH
T ss_pred eEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHH
Confidence 8999999952110 111111111111 12334445555433211 1 11 24788888888
Q ss_pred HHHHHHHHhhCCCCCCCCCcchHHHHHHHHHcCCch
Q 011568 302 EALNLFIDKVGSSILQVPTLNEGIINEVVEECGRLP 337 (483)
Q Consensus 302 ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 337 (483)
+-.+++........... ......+++.+.|.-
T Consensus 190 ~r~~il~~~~~~~~~~~----~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 190 GREQILRIHARGKPLAE----DVDLALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHHHTTSCBCT----TCCHHHHHHTCTTCC
T ss_pred HHHHHHHHHHcCCCCCc----ccCHHHHHHHcCCCC
Confidence 88888876653321111 111345666666643
No 131
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.80 E-value=0.0051 Score=53.92 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||++.+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 368999999999999999999876
No 132
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.80 E-value=0.0054 Score=53.06 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.+|.|.|++|+||||+++.+...+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999874
No 133
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.78 E-value=0.044 Score=54.01 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=57.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhccc------------CCCCCC
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPL-DLIKLQTEIATALKQS------------LPENED 228 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~------------~~~~~~ 228 (483)
.-.-++|.|.+|+|||+|+..+.+.. .+.+-+.++++-++... .+.++.+++...=... ...+..
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~--~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p 229 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNV--AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEP 229 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHT--TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSC
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhh--HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCC
Confidence 34689999999999999999998872 12333556777777644 4667777776542211 001111
Q ss_pred HH------HHHHHHHHHHhc--CCeEEEEEeCCC
Q 011568 229 KV------SRAGRLLRMLKA--KEKFVLILDDMW 254 (483)
Q Consensus 229 ~~------~~~~~l~~~l~~--~~~~LlVlDdv~ 254 (483)
.. ...-.+.+++.+ ++.+||++||+-
T Consensus 230 ~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 230 PGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 11 222234455544 699999999984
No 134
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.77 E-value=0.029 Score=52.36 Aligned_cols=88 Identities=19% Similarity=0.190 Sum_probs=52.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcccC---CCCCCHHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQSL---PENEDKVSRAGRLLR 238 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~---~~~~~~~~~~~~l~~ 238 (483)
..+++++|++|+||||++..++..+... -..+.++.... .....+.+.......+.+. +...+.........+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 4689999999999999999998874322 12356666543 2233334444555554421 122455555555555
Q ss_pred HHhcCCeEEEEEeCC
Q 011568 239 MLKAKEKFVLILDDM 253 (483)
Q Consensus 239 ~l~~~~~~LlVlDdv 253 (483)
.+.....=++++|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 554213447888875
No 135
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.77 E-value=0.0063 Score=52.73 Aligned_cols=25 Identities=32% Similarity=0.298 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+|.|.|++|+||||+++.+...+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998873
No 136
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.75 E-value=0.0061 Score=51.98 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+|+|+|++|+||||+++.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 137
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.75 E-value=0.0051 Score=52.81 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.++|.|+|++|+||||+++.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 467899999999999999999887
No 138
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.74 E-value=0.0058 Score=55.80 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.+|.|.|++|+||||||+.++..+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998873
No 139
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.74 E-value=0.0054 Score=53.93 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+|+|+|++|+|||||++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999887
No 140
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.73 E-value=0.0096 Score=57.49 Aligned_cols=43 Identities=23% Similarity=0.259 Sum_probs=32.9
Q ss_pred ccccchHHHHHHHHHHhc-------------C--CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 142 LAGKRTGKIVKEIWEDLM-------------G--DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 142 ~vGr~~~~~~~~l~~~L~-------------~--~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
++|.+ ..++.+...+. . .....+.++|++|+|||++|+.+++.
T Consensus 17 i~G~~--~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 17 VIGQE--QAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCSCH--HHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCHH--HHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 68877 56666666551 1 12457899999999999999999988
No 141
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.72 E-value=0.005 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
++++|.|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999999876
No 142
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.72 E-value=0.0073 Score=52.13 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...+|.|.|++|+||||+++.+...+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999884
No 143
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.72 E-value=0.033 Score=54.64 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+|.|+|++|+||||++..++..+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999874
No 144
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.71 E-value=0.0054 Score=52.40 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+.|.|.|++|+||||+|+.+...+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999873
No 145
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.70 E-value=0.0053 Score=52.33 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNIN 184 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~ 184 (483)
..+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999643
No 146
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.69 E-value=0.0066 Score=61.02 Aligned_cols=42 Identities=14% Similarity=0.191 Sum_probs=34.5
Q ss_pred cccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 141 NLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.++|.+ +.++.+...+..+ .-|.|+|++|+|||+||+.+++.
T Consensus 23 ~ivGq~--~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERS--HAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCH--HHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHH--HHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHH
Confidence 388888 6777777666554 47889999999999999999987
No 147
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.67 E-value=0.036 Score=55.05 Aligned_cols=63 Identities=14% Similarity=0.053 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 011568 150 IVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATA 218 (483)
Q Consensus 150 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 218 (483)
.++.++.-+ ....++.|.|.+|+||||||.+++...... . =..++|++.. .+..++...++..
T Consensus 189 ~LD~~lgGl--~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~-g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 189 ELDQLIGTL--GPGSLNIIAARPAMGKTAFALTIAQNAALK-E-GVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp HHHHHHCCC--CTTCEEEEEECTTSCHHHHHHHHHHHHHHT-T-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred hhhhhcCCc--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-C-CCeEEEEECC--CCHHHHHHHHHHH
Confidence 455554212 234699999999999999999998873221 1 1247787765 3455666666543
No 148
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.66 E-value=0.0094 Score=53.09 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 151 VKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 151 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+.+...+.......|+|+|.+|+|||||+..+...
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 334444444456788999999999999999999887
No 149
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.66 E-value=0.0067 Score=52.50 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+++|+|++|+|||||++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 57899999999999999999764
No 150
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.63 E-value=0.0028 Score=56.45 Aligned_cols=111 Identities=15% Similarity=-0.009 Sum_probs=58.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCC--CCCHHHHHHHHHHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPE--NEDKVSRAGRLLRM 239 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~ 239 (483)
...++.|+|+.|+||||++..+.+++... . ..++.++...... ....++..++...+. .....+....+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~--g-~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA--D-VKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT--T-CCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc--C-CEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 35789999999999999999988874221 1 2344444332211 112334444432211 11223333333333
Q ss_pred HhcCCeEEEEEeCCCCc--cCccccccCCCCCCCCcEEEEecCC
Q 011568 240 LKAKEKFVLILDDMWEA--FPLEEVGIPEPNEENGCKLVITTRS 281 (483)
Q Consensus 240 l~~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~s~ilvTtR~ 281 (483)
+..++.-+||+|.+... ..++.+. .+.+ .+..||+|.+.
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLD 125 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCS
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecc
Confidence 33334559999999742 2222221 1111 26778888885
No 151
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.63 E-value=0.0056 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
++|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999887
No 152
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.63 E-value=0.007 Score=53.39 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+|+|+|+.|+|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999886
No 153
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.63 E-value=0.0075 Score=52.91 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+|+|+|++|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 154
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.61 E-value=0.008 Score=53.37 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 150 IVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 150 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+.+...+.....++|+|+|.+|+|||||+..+...
T Consensus 17 ~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 17 LAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4444555554456789999999999999999999887
No 155
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.60 E-value=0.0071 Score=51.91 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.++|+|+.|+|||||++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998774
No 156
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.59 E-value=0.0074 Score=51.07 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+|+|.|++|+||||+++.+...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998873
No 157
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.59 E-value=0.057 Score=54.55 Aligned_cols=51 Identities=10% Similarity=-0.016 Sum_probs=35.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIAT 217 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 217 (483)
..++.|.|.+|+||||||.+++..... .+=..++|++... +..++...++.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~--~~g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGT--AMGKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTT--TSCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHH--hcCCcEEEEeccC--CHHHHHHHHHH
Confidence 478999999999999999999887321 1113578887654 45566655543
No 158
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.59 E-value=0.0089 Score=51.54 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...|+|+|++|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 159
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.59 E-value=0.048 Score=53.98 Aligned_cols=91 Identities=19% Similarity=0.278 Sum_probs=59.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHhccc-------C------CCCC
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPL-DLIKLQTEIATALKQS-------L------PENE 227 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~-------~------~~~~ 227 (483)
.-.-++|.|.+|+|||+|+..+.+.. .+.+-+.++++-++... ...++.+++...=... . ..+.
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~--a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~ 241 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNI--AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 241 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHT--TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTS
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHH--HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCC
Confidence 34679999999999999999998872 12334677888887755 4667777776531111 0 0011
Q ss_pred C------HHHHHHHHHHHHhc--CCeEEEEEeCCC
Q 011568 228 D------KVSRAGRLLRMLKA--KEKFVLILDDMW 254 (483)
Q Consensus 228 ~------~~~~~~~l~~~l~~--~~~~LlVlDdv~ 254 (483)
. .....-.+.+++.+ ++.+||++||+-
T Consensus 242 p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 242 PPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp CHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1 11223345566665 689999999984
No 160
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.56 E-value=0.0074 Score=52.77 Aligned_cols=23 Identities=48% Similarity=0.785 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.|+|.|+.|+||||+++.+...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999874
No 161
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.56 E-value=0.0081 Score=52.29 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..++|+|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4578999999999999999999876
No 162
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.56 E-value=0.0077 Score=52.29 Aligned_cols=24 Identities=38% Similarity=0.277 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+|+|.|++|+||||+++.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999887
No 163
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.56 E-value=0.0063 Score=53.26 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.++++|+|+.|+|||||++.+...
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999876
No 164
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.55 E-value=0.052 Score=51.35 Aligned_cols=58 Identities=24% Similarity=0.248 Sum_probs=36.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHhcc
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIATALKQ 221 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~ 221 (483)
....+++|+|+.|+||||+++.++..+... . ..+.++...- .....+-+....+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~--~-g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH--G-FSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT--T-CCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc--C-CEEEEEeecccccchHHHHHHHHHHcCc
Confidence 346799999999999999999998874322 1 1344544332 23344445555555553
No 165
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.55 E-value=0.0093 Score=52.21 Aligned_cols=25 Identities=36% Similarity=0.341 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+|+|.|++|+||||+++.+.+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999877
No 166
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.55 E-value=0.0083 Score=52.40 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999998764
No 167
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.54 E-value=0.0081 Score=52.06 Aligned_cols=24 Identities=33% Similarity=0.252 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+|+|.|++|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999887
No 168
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.54 E-value=0.016 Score=50.20 Aligned_cols=118 Identities=22% Similarity=0.180 Sum_probs=61.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC---CCCHHHHHHHHHH---HhcccCC-CCCC-------
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ---PLDLIKLQTEIAT---ALKQSLP-ENED------- 228 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~il~---~l~~~~~-~~~~------- 228 (483)
...|.|++..|.||||+|--..-+.. ...+ .+.++.+.+ ..+...++..+.- +.+.... ...+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~--g~G~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV--GHGK-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH--HTTC-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--HCCC-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 35677777777999999998877632 2222 356665543 2334444444310 0000000 0111
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCC-----ccCccccccCCCCCCCCcEEEEecCChh
Q 011568 229 KVSRAGRLLRMLKAKEKFVLILDDMWE-----AFPLEEVGIPEPNEENGCKLVITTRSCR 283 (483)
Q Consensus 229 ~~~~~~~l~~~l~~~~~~LlVlDdv~~-----~~~~~~l~~~l~~~~~~s~ilvTtR~~~ 283 (483)
.........+.+.+++-=|||||++-. ....+.+...+........||+|+|...
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 112233344555554566999999842 2222333333333345678999999853
No 169
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.52 E-value=0.0069 Score=51.42 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.+|.|.|++|+||||+|+.+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998873
No 170
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.51 E-value=0.013 Score=56.90 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+.++|++|+|||++|+.+++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999988
No 171
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.50 E-value=0.0078 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+|+|+|++|+||||+++.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999876
No 172
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.50 E-value=0.0088 Score=53.00 Aligned_cols=26 Identities=35% Similarity=0.327 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..++|.|.|++|+||||.|+.+.+.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999883
No 173
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.49 E-value=0.0086 Score=51.55 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...|+|.|++|+||||+++.+.+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999876
No 174
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.47 E-value=0.008 Score=52.32 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+|+|.|++|+||||+|+.+...+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999873
No 175
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.47 E-value=0.014 Score=54.26 Aligned_cols=27 Identities=30% Similarity=0.139 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
....+|+|.|+.|+|||||++.+...+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999999988774
No 176
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.47 E-value=0.014 Score=54.39 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+|.|.|++|+||||+|+.+...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999887
No 177
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.46 E-value=0.032 Score=52.06 Aligned_cols=87 Identities=14% Similarity=0.085 Sum_probs=48.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCC-HHHHHHHHHHHhcccC---CCCCCHHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLD-LIKLQTEIATALKQSL---PENEDKVSRAGRLLR 238 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~---~~~~~~~~~~~~l~~ 238 (483)
..+++|+|.+|+||||++..++..+... -..+.++....... ....+..+....+... ....++.++......
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999998874322 12355555432211 1122334444444321 122345455443444
Q ss_pred HH-hcCCeEEEEEeCC
Q 011568 239 ML-KAKEKFVLILDDM 253 (483)
Q Consensus 239 ~l-~~~~~~LlVlDdv 253 (483)
.+ .. +.=++|+|-.
T Consensus 175 ~~~~~-~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLE-ARDLILVDTA 189 (295)
T ss_dssp HHHHH-TCCEEEEECC
T ss_pred HHHhC-CCCEEEEeCC
Confidence 44 34 4567888976
No 178
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.44 E-value=0.017 Score=53.36 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 011568 166 IGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 166 i~I~G~~GiGKTtLa~~v~~~ 186 (483)
+.|+|++|+|||||++.++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999988
No 179
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.42 E-value=0.0082 Score=52.63 Aligned_cols=22 Identities=32% Similarity=0.509 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINN 185 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~ 185 (483)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999976
No 180
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.42 E-value=0.0091 Score=52.53 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.+|+|.|++|+||||+++.+...+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999884
No 181
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.41 E-value=0.0097 Score=52.33 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+|+|+|++|+||||+++.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 182
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.40 E-value=0.0093 Score=51.56 Aligned_cols=24 Identities=33% Similarity=0.282 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+|+|.|++|+||||+++.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999887
No 183
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.40 E-value=0.0086 Score=52.60 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINN 185 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~ 185 (483)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 184
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.38 E-value=0.01 Score=50.24 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+++.|.|+.|+|||||+..+...+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999999874
No 185
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.38 E-value=0.11 Score=51.98 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhc
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLH 188 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 188 (483)
...+|.|+|.+|+||||++..++..+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999997743
No 186
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.34 E-value=0.01 Score=54.32 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+|.|.|++|+||||+|+.+...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998874
No 187
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.33 E-value=0.034 Score=64.33 Aligned_cols=86 Identities=14% Similarity=0.160 Sum_probs=58.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCC-----CCCCHHHHHHHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLP-----ENEDKVSRAGRL 236 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 236 (483)
..+++.|+|++|+||||||.+++..... .=..++|++.....+... ++.++.+.. ...+..+....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~---~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 3479999999999999999999888322 123588999888776542 555655322 123455555555
Q ss_pred HHHHhcCCeEEEEEeCCCC
Q 011568 237 LRMLKAKEKFVLILDDMWE 255 (483)
Q Consensus 237 ~~~l~~~~~~LlVlDdv~~ 255 (483)
.......+.-+||+|.+..
T Consensus 454 ~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGG
T ss_pred HHHHHhcCCcEEEECCHHH
Confidence 5444444677999999863
No 188
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.32 E-value=0.0095 Score=52.45 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999877
No 189
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.31 E-value=0.01 Score=50.06 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.|+|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999887
No 190
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.30 E-value=0.01 Score=51.91 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+|+|.|++|+||||+|+.+...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999887
No 191
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.29 E-value=0.011 Score=52.55 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...|.|.|++|+||||+++.+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998873
No 192
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.28 E-value=0.01 Score=51.30 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+|+|.|+.|+||||+++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999874
No 193
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.28 E-value=0.0069 Score=51.96 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=17.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999877
No 194
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.27 E-value=0.018 Score=54.70 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=28.5
Q ss_pred HHHHHHHHh----cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 150 IVKEIWEDL----MGDKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 150 ~~~~l~~~L----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+.+++.+ ..+....|.|+|++|+||||+++.++..+
T Consensus 7 L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 7 LADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 444444444 34556779999999999999999988873
No 195
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.23 E-value=0.01 Score=53.79 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+|+|+|++|+|||||++.+...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999976
No 196
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.23 E-value=0.0093 Score=53.04 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||++.+...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999886
No 197
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.23 E-value=0.012 Score=51.90 Aligned_cols=25 Identities=24% Similarity=0.105 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+|+|.|+.|+||||+++.+...+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999874
No 198
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.20 E-value=0.011 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.|+|.|+.|+||||+++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999884
No 199
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.20 E-value=0.013 Score=53.18 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...+|+|.|+.|+|||||++.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998763
No 200
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.19 E-value=0.014 Score=50.84 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=27.4
Q ss_pred HHHHHHHhcCC-CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 151 VKEIWEDLMGD-KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 151 ~~~l~~~L~~~-~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+..+..++.+- ....+.|+|++|+||||+|..+++.+
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 44455555432 23479999999999999999998883
No 201
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.18 E-value=0.013 Score=51.72 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+|+|.|+.|+||||+++.+...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999874
No 202
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.17 E-value=0.012 Score=51.08 Aligned_cols=25 Identities=40% Similarity=0.490 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+|+|+|+.|+||||+++.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999876
No 203
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.16 E-value=0.012 Score=52.12 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999887
No 204
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.14 E-value=0.013 Score=52.16 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 479999999999999999999877
No 205
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.14 E-value=0.013 Score=55.16 Aligned_cols=27 Identities=30% Similarity=0.273 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
....+|+|.|+.|+|||||++.+..-+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345799999999999999999998874
No 206
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.13 E-value=0.013 Score=49.04 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
....+++|.|+.|+|||||++.++.-+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345799999999999999999998874
No 207
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.08 E-value=0.049 Score=53.97 Aligned_cols=51 Identities=8% Similarity=0.043 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 011568 149 KIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ 204 (483)
Q Consensus 149 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 204 (483)
..++++..-+ ....++.|.|.+|+||||||.+++...... =..++|++...
T Consensus 185 ~~LD~~lgGl--~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEm 235 (444)
T 3bgw_A 185 TELDRMTYGY--KRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEM 235 (444)
T ss_dssp HHHHHHHSSB--CSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSS
T ss_pred HHHHhhcCCC--CCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCC
Confidence 3555554212 234789999999999999999998874322 13577877654
No 208
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.07 E-value=0.013 Score=52.47 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...|.|.|++|+||||+++.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999887
No 209
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.07 E-value=0.013 Score=51.83 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999877
No 210
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.06 E-value=0.013 Score=53.40 Aligned_cols=25 Identities=28% Similarity=0.330 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+|+|.|+.|+||||+++.+...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3469999999999999999999976
No 211
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.03 E-value=0.039 Score=49.75 Aligned_cols=49 Identities=22% Similarity=0.213 Sum_probs=31.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEI 215 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 215 (483)
..++.|.|.+|+|||+||.+++.... . ..-..+++++... +..++...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~-~-~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGA-E-EYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHH-H-HHCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH-H-hcCCCceeecccC--CHHHHHHHH
Confidence 47999999999999999998765411 1 1123466776543 344444443
No 212
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.02 E-value=0.014 Score=51.10 Aligned_cols=24 Identities=33% Similarity=0.224 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+|+|.|+.|+||||+++.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999887
No 213
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.00 E-value=0.015 Score=54.49 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...+++|+|++|+|||||++.++..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999999998774
No 214
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.99 E-value=0.0073 Score=53.30 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
+|+|.|+.|+||||+++.+...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998874
No 215
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.98 E-value=0.037 Score=63.20 Aligned_cols=87 Identities=14% Similarity=0.159 Sum_probs=58.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCC-----CCCCHHHHHHHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLP-----ENEDKVSRAGRL 236 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 236 (483)
..+++.|.|++|+||||||.+++...... =..++|++.....+.. .++.++.+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~---G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 35799999999999999999998873321 2368999988877653 2455554321 123445555555
Q ss_pred HHHHhcCCeEEEEEeCCCCc
Q 011568 237 LRMLKAKEKFVLILDDMWEA 256 (483)
Q Consensus 237 ~~~l~~~~~~LlVlDdv~~~ 256 (483)
.......+.-+||+|.+...
T Consensus 454 ~~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTC
T ss_pred HHHHHhcCCCEEEECCHHHh
Confidence 54444446779999998643
No 216
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.98 E-value=0.018 Score=52.41 Aligned_cols=24 Identities=33% Similarity=0.283 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+|.|.|++|+||||+|+.+...
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999999887
No 217
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.97 E-value=0.014 Score=54.88 Aligned_cols=41 Identities=27% Similarity=0.418 Sum_probs=30.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ 204 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 204 (483)
++.+||+|.|-||+||||.+..+..-+.+... .+.-|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~Gk---kVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGK---RVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCC---eEEEEecCC
Confidence 46799999999999999999988877543221 366666653
No 218
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.96 E-value=0.015 Score=52.85 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....+|+|.|++|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999886
No 219
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.92 E-value=0.014 Score=51.87 Aligned_cols=25 Identities=28% Similarity=0.212 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...|.|.|++|+||||+++.+...+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999873
No 220
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.87 E-value=0.018 Score=49.23 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+|+|.|+.|+||||+++.+...+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998874
No 221
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.86 E-value=0.015 Score=52.64 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINN 185 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~ 185 (483)
..+++|+|++|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 47999999999999999999874
No 222
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.85 E-value=0.018 Score=52.15 Aligned_cols=25 Identities=24% Similarity=0.229 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....|+|.|++|+||||+|+.+.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999887
No 223
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.83 E-value=0.017 Score=50.77 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+|.|.|++|+||||.|+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999988
No 224
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.79 E-value=0.015 Score=50.38 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.+++|+|+.|+|||||++.++..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 478999999999999999998874
No 225
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.77 E-value=0.011 Score=53.07 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH-hh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNIN-NK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~-~~ 186 (483)
..+++|+|+.|+|||||++.+. ..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999999999998 65
No 226
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.76 E-value=0.019 Score=50.68 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
....+|.|.|+.|+||||+++.+...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998874
No 227
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.76 E-value=0.019 Score=56.50 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+-|.++|++|+|||++|+.++..
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999999988
No 228
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.76 E-value=0.0051 Score=58.86 Aligned_cols=51 Identities=20% Similarity=0.163 Sum_probs=33.4
Q ss_pred HHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 011568 153 EIWEDLMG-DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ 204 (483)
Q Consensus 153 ~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 204 (483)
++++.+.. ....-++|+|.+|+|||+|+..+.+........+. ++++-+++
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGE 215 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDE 215 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEecc
Confidence 44455533 34568899999999999999999887432223333 34566554
No 229
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.75 E-value=0.02 Score=48.86 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.++++|.|+.|+|||||+..+...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998874
No 230
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.74 E-value=0.021 Score=53.87 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+|+|.|+.|+|||||++.+...+
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999987763
No 231
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.72 E-value=0.011 Score=50.36 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
++++|+|+.|+|||||++.+...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998774
No 232
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.67 E-value=0.019 Score=51.76 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+++|+|+.|+|||||.+.++.-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 79999999999999999998865
No 233
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.67 E-value=0.045 Score=48.32 Aligned_cols=52 Identities=19% Similarity=0.242 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIAT 217 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 217 (483)
..|+|.|+.|+||||+++.+.+.+.. ..+..+.+..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~--~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ--LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH--cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 58999999999999999999988532 23433444443333334555555554
No 234
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.67 E-value=0.019 Score=51.36 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+|+|.|++|+||||+++.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999887
No 235
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.67 E-value=0.018 Score=51.77 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+++|+|+.|+|||||++.+..-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3468999999999999999998765
No 236
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.63 E-value=0.02 Score=50.14 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
++|+|.|+.|+||||+++.+...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 38999999999999999999887
No 237
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.63 E-value=0.02 Score=54.21 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+|+|.|+.|+||||||..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999999988
No 238
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.62 E-value=0.019 Score=50.83 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINN 185 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~ 185 (483)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 239
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.62 E-value=0.036 Score=49.56 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...+|+|.|++|+||||+++.+...+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34789999999999999999999984
No 240
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.59 E-value=0.017 Score=51.56 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||.+.++.-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998765
No 241
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.57 E-value=0.045 Score=49.12 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=33.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIA 216 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 216 (483)
...|.|.|+.|+||||+++.+...+.. ..+..+....-.......+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~--~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ--NGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH--TTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--cCCCeeeeecCCCCCHHHHHHHHHH
Confidence 468999999999999999999988532 3455344444333323334444443
No 242
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.57 E-value=0.021 Score=50.92 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.|.|.|++|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999887
No 243
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.56 E-value=0.011 Score=55.00 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...+|+|.|+.|+||||+|+.+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998863
No 244
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.56 E-value=0.054 Score=61.85 Aligned_cols=84 Identities=14% Similarity=0.169 Sum_probs=61.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCC-----CCCCHHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLP-----ENEDKVSRAGRLL 237 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 237 (483)
-++|-|+|+.|+||||||.++..... ..=..++|+...+..+..- ++.+|.+.+ .....++....+.
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~---~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH---hcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 47999999999999999999987622 2234588999888776653 777776443 2234466666677
Q ss_pred HHHhcCCeEEEEEeCCC
Q 011568 238 RMLKAKEKFVLILDDMW 254 (483)
Q Consensus 238 ~~l~~~~~~LlVlDdv~ 254 (483)
..++.+..-+||+|-|-
T Consensus 1503 ~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHTCCSEEEESCST
T ss_pred HHHHcCCCCEEEEccHH
Confidence 77777788899999884
No 245
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.53 E-value=0.022 Score=53.16 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.++|+|.|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 368999999999999999999887
No 246
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.52 E-value=0.023 Score=53.49 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+|+|.|+.|+|||||++.+...
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999876
No 247
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.52 E-value=0.021 Score=50.41 Aligned_cols=22 Identities=32% Similarity=0.231 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999887
No 248
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.51 E-value=0.018 Score=52.20 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+|+|+|+.|+||||+++.+...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999999987
No 249
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.51 E-value=0.022 Score=53.54 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
++|.|+|+.|+||||||..++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999988
No 250
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.51 E-value=0.024 Score=52.48 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINN 185 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~ 185 (483)
...+|+|.|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999983
No 251
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.48 E-value=0.024 Score=53.10 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+++|+|+.|+||||+++.++..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998874
No 252
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.48 E-value=0.055 Score=56.01 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=35.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 140 RNLAGKRTGKIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 140 ~~~vGr~~~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..++|.+ ..++.+...+..+ ..+.|+|++|+||||||+.++..
T Consensus 41 ~~i~G~~--~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQE--HAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCH--HHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECch--hhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhcc
Confidence 3588887 6677776666655 58999999999999999999987
No 253
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.47 E-value=0.022 Score=50.49 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..|.|.|++|+||||+|+.+...+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999873
No 254
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.44 E-value=0.023 Score=53.70 Aligned_cols=25 Identities=16% Similarity=0.334 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.++|.|+|+.|+|||||+..++..+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3689999999999999999999873
No 255
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.43 E-value=0.013 Score=62.03 Aligned_cols=71 Identities=18% Similarity=0.269 Sum_probs=44.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
.+-|.++|++|+|||.||+.+++.+ .. -++.++. . +++. .. -... +.....+.+.-+.
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~---~~-----~f~~v~~----~----~l~s----~~-vGes-e~~vr~lF~~Ar~ 568 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANEC---QA-----NFISIKG----P----ELLT----MW-FGES-EANVREIFDKARQ 568 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTT---TC-----EEEECCH----H----HHHT----TT-CSSC-HHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCchHHHHHHHHHh---CC-----ceEEecc----c----hhhc----cc-cchH-HHHHHHHHHHHHH
Confidence 3458899999999999999999982 11 2233321 1 1111 11 1222 3455555555554
Q ss_pred CCeEEEEEeCCCC
Q 011568 243 KEKFVLILDDMWE 255 (483)
Q Consensus 243 ~~~~LlVlDdv~~ 255 (483)
..+++|+||+++.
T Consensus 569 ~~P~IifiDEiDs 581 (806)
T 3cf2_A 569 AAPCVLFFDELDS 581 (806)
T ss_dssp TCSEEEECSCGGG
T ss_pred cCCceeechhhhH
Confidence 4899999999974
No 256
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.42 E-value=0.023 Score=51.23 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||++.++.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999765
No 257
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.41 E-value=0.046 Score=52.47 Aligned_cols=37 Identities=22% Similarity=0.538 Sum_probs=28.4
Q ss_pred HHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 151 VKEIWEDLM--GDKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 151 ~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...++..+. .....+|+|+|.+|+|||||+..+...+
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 334444443 3467899999999999999999998774
No 258
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.40 E-value=0.017 Score=50.86 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||++.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998764
No 259
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.39 E-value=0.05 Score=53.32 Aligned_cols=91 Identities=12% Similarity=0.156 Sum_probs=54.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCC-CCCC-eEEEEEeCCC-CCHHHHHHHHHHH--hcc----cCCCCCCHH---
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKP-NKFN-DVIWVTVSQP-LDLIKLQTEIATA--LKQ----SLPENEDKV--- 230 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~f~-~~~wv~~~~~-~~~~~~~~~il~~--l~~----~~~~~~~~~--- 230 (483)
-.-++|.|.+|+|||+|+.++++. .... ++-+ .++++-++.. ..+.++.+++... +.. ....+....
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~-~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQ-ATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHH-CBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHH-HHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 345789999999999999999988 3221 1111 4566666653 3466777766543 111 001112211
Q ss_pred ---HHHHHHHHHHhc--CCeEEEEEeCCC
Q 011568 231 ---SRAGRLLRMLKA--KEKFVLILDDMW 254 (483)
Q Consensus 231 ---~~~~~l~~~l~~--~~~~LlVlDdv~ 254 (483)
...-.+.+++.+ ++.+||++||+-
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 122345566663 689999999984
No 260
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.36 E-value=0.056 Score=53.55 Aligned_cols=88 Identities=16% Similarity=0.132 Sum_probs=52.4
Q ss_pred CceEEEEEcCCCCcHHHHHH-HHHhhhccCCCCCCe-EEEEEeCCCC-CHHHHHHHHHHHhccc------CCCCCCHHHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMS-NINNKLHEKPNKFND-VIWVTVSQPL-DLIKLQTEIATALKQS------LPENEDKVSR 232 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~-~v~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~il~~l~~~------~~~~~~~~~~ 232 (483)
...-++|.|.+|+|||+||. .+.+. . +-+. ++++-+++.. .+.++.+++...=... ...+......
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~-~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r 235 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQ-K----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLL 235 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGG-G----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHh-h----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHH
Confidence 34678999999999999964 66666 2 2343 4677777644 4566666665421110 0111221111
Q ss_pred ------HHHHHHHHhc-CCeEEEEEeCCC
Q 011568 233 ------AGRLLRMLKA-KEKFVLILDDMW 254 (483)
Q Consensus 233 ------~~~l~~~l~~-~~~~LlVlDdv~ 254 (483)
...+.+++.+ ++.+||++||+-
T Consensus 236 ~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 236 YLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 1234445544 589999999984
No 261
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.34 E-value=0.061 Score=53.37 Aligned_cols=87 Identities=15% Similarity=0.138 Sum_probs=52.1
Q ss_pred ceEEEEEcCCCCcHHHHHH-HHHhhhccCCCCCCe-EEEEEeCCCC-CHHHHHHHHHHHhcc------cCCCCCCHHH--
Q 011568 163 VSKIGVWGMGGIGKTTIMS-NINNKLHEKPNKFND-VIWVTVSQPL-DLIKLQTEIATALKQ------SLPENEDKVS-- 231 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~-~v~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~il~~l~~------~~~~~~~~~~-- 231 (483)
..-++|.|.+|+|||+||. .+.+. . .-+. ++++-+++.. .+.++.+.+...=.. ....+.....
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~---~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQ---K--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTT---T--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHh---h--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 4578999999999999964 66666 2 2443 4677777644 466666666553111 0011122111
Q ss_pred ----HHHHHHHHHhc-CCeEEEEEeCCC
Q 011568 232 ----RAGRLLRMLKA-KEKFVLILDDMW 254 (483)
Q Consensus 232 ----~~~~l~~~l~~-~~~~LlVlDdv~ 254 (483)
....+.+++.+ ++.+||++||+-
T Consensus 250 ~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 12234444544 589999999984
No 262
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.33 E-value=0.023 Score=51.97 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+++|+|+.|+|||||++.++.-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998765
No 263
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.31 E-value=0.036 Score=50.66 Aligned_cols=109 Identities=19% Similarity=0.169 Sum_probs=56.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC-CCCHHHHHHHHHH--HhcccCCCCCCHHHHHHHHH
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ-PLDLIKLQTEIAT--ALKQSLPENEDKVSRAGRLL 237 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~--~l~~~~~~~~~~~~~~~~l~ 237 (483)
....+++|+|+.|+|||||++.+...+... +...+++.-.. .+-.... ..++. .++. +.......+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~---~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl------~~~~l~~~la 92 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQT---KSYHIITIEDPIEYVFKHK-KSIVNQREVGE------DTKSFADALR 92 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHH---CCCEEEEEESSCCSCCCCS-SSEEEEEEBTT------TBSCHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCC---CCCEEEEcCCcceeecCCc-ceeeeHHHhCC------CHHHHHHHHH
Confidence 345799999999999999999988763211 12223222111 0000000 00000 0000 1112345666
Q ss_pred HHHhcCCeEEEEEeCCCCccCccccccCCCCCCCCcEEEEecCChh
Q 011568 238 RMLKAKEKFVLILDDMWEAFPLEEVGIPEPNEENGCKLVITTRSCR 283 (483)
Q Consensus 238 ~~l~~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~ilvTtR~~~ 283 (483)
+.+.. ++-+|++|+.-+......+... ...|.-|++||....
T Consensus 93 ~aL~~-~p~illlDEp~D~~~~~~~l~~---~~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 93 AALRE-DPDVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNT 134 (261)
T ss_dssp HHHHH-CCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEECCSS
T ss_pred HHHhh-CCCEEEeCCCCCHHHHHHHHHH---HccCCEEEEEeCcch
Confidence 77776 6778889998654333222111 123556788887644
No 264
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.31 E-value=0.052 Score=50.60 Aligned_cols=40 Identities=18% Similarity=0.090 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeC
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVS 203 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 203 (483)
...+++|.|++|+|||||+..++..+....+ ..++|++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G--~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMG--KKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSC--CCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC--CeEEEEeCc
Confidence 3479999999999999999999887422211 146676653
No 265
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.29 E-value=0.026 Score=50.61 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...|.|.|++|+||||+|+.+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999883
No 266
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.28 E-value=0.027 Score=52.40 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.++|.|.|+.|+||||||..++..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 468999999999999999999987
No 267
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.27 E-value=0.022 Score=52.52 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||++.+..-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999998765
No 268
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.25 E-value=0.026 Score=48.86 Aligned_cols=24 Identities=17% Similarity=0.255 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+.|.|.|++|+||||||..+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 367899999999999999999877
No 269
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.23 E-value=0.026 Score=51.30 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 270
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.23 E-value=0.02 Score=50.58 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||++.++.-
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998765
No 271
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.23 E-value=0.023 Score=51.24 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||.+.++.-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998765
No 272
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.22 E-value=0.027 Score=48.73 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.-.|+|+|++|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999876
No 273
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.19 E-value=0.023 Score=52.07 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||++.+..-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 468999999999999999999765
No 274
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.19 E-value=0.026 Score=51.61 Aligned_cols=25 Identities=28% Similarity=0.326 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+++|+|+.|+|||||++.++.-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3478999999999999999998765
No 275
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.18 E-value=0.024 Score=51.77 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998765
No 276
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.18 E-value=0.024 Score=50.73 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||.+.++.-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999776
No 277
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.15 E-value=0.028 Score=50.80 Aligned_cols=24 Identities=38% Similarity=0.347 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999998765
No 278
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.14 E-value=0.071 Score=47.04 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...|+|.|+.|+||||+++.+.+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999885
No 279
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.13 E-value=0.028 Score=52.51 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999875
No 280
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.12 E-value=0.025 Score=51.26 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||++.++.-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998765
No 281
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.11 E-value=0.031 Score=51.32 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998874
No 282
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.07 E-value=0.1 Score=52.07 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhc
Q 011568 149 KIVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLH 188 (483)
Q Consensus 149 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 188 (483)
+.+..+..++.+++ +.+.|.|++|+|||+++..+...+.
T Consensus 32 ~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 32 NAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp HHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34555556665543 4899999999999999999998853
No 283
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.07 E-value=0.029 Score=51.13 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+++|+|+.|+|||||.+.++.-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3469999999999999999998765
No 284
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.07 E-value=0.03 Score=55.07 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999999999999999877
No 285
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.06 E-value=0.033 Score=53.36 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+++|+|+.|+||||+++.++..+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4699999999999999999998874
No 286
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.04 E-value=0.032 Score=52.08 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....+++|+|+.|+|||||++.+..-
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 34579999999999999999999876
No 287
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.00 E-value=0.031 Score=51.13 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||++.+..-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999998765
No 288
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.98 E-value=0.031 Score=51.46 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+++|+|+.|+|||||++.++.-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998765
No 289
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.98 E-value=0.025 Score=48.48 Aligned_cols=22 Identities=32% Similarity=0.515 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999763
No 290
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.97 E-value=0.03 Score=48.64 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
-.|+|+|++|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 291
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.97 E-value=0.032 Score=46.85 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 292
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.97 E-value=0.078 Score=48.22 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCC-C-ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 149 KIVKEIWEDLMGD-K-VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 149 ~~~~~l~~~L~~~-~-~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....-+..|+... . ...|.++|++|+|||.+|..+++.
T Consensus 88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3445567777664 3 457999999999999999999986
No 293
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.95 E-value=0.035 Score=46.00 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 294
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.94 E-value=0.028 Score=50.94 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||.+.++.-
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999998765
No 295
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.91 E-value=0.03 Score=51.72 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..++.|+|++|+|||||+..++..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 479999999999999999999875
No 296
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.87 E-value=0.033 Score=51.09 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||++.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999998765
No 297
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.86 E-value=0.065 Score=47.56 Aligned_cols=58 Identities=22% Similarity=0.142 Sum_probs=34.6
Q ss_pred cCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 011568 159 MGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIAT 217 (483)
Q Consensus 159 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 217 (483)
.......|.|.|+.|+||||+++.+.+.+... ..+..+....-+......+.+++++.
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~-~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEI-YGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHHHHHHH-HCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-cCceeeEeeeCCCCChHHHHHHHHHh
Confidence 33456789999999999999999999885320 22333331223333334444555544
No 298
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.83 E-value=0.03 Score=50.94 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||.+.++.-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998765
No 299
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.80 E-value=0.031 Score=51.65 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||++.++.-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999998765
No 300
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.72 E-value=0.043 Score=51.77 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLH 188 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 188 (483)
..+|+|+|++|+||||++..++..+.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999988743
No 301
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.64 E-value=0.044 Score=54.53 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...+++|+|+.|+|||||++.++..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 35799999999999999999998874
No 302
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.63 E-value=0.083 Score=51.74 Aligned_cols=91 Identities=15% Similarity=0.194 Sum_probs=53.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCC--------CCCC-eEEEEEeCCC-CCHHHHHHHHHHH--hcc-----cCCC
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKP--------NKFN-DVIWVTVSQP-LDLIKLQTEIATA--LKQ-----SLPE 225 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------~~f~-~~~wv~~~~~-~~~~~~~~~il~~--l~~-----~~~~ 225 (483)
-.-++|.|.+|+|||+|+.++++. .... ++-+ .++++-++.. ..+.++.+++... +.. ....
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~-~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d 225 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQ-ATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKAD 225 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHH-CBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETT
T ss_pred CCEEEEecCCCCCchHHHHHHHHH-HHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCC
Confidence 356789999999999999999888 3321 1122 4566666654 3466666665442 110 1111
Q ss_pred CCCHH-----HHHHHHHHHHhc--CCeEEEEEeCCC
Q 011568 226 NEDKV-----SRAGRLLRMLKA--KEKFVLILDDMW 254 (483)
Q Consensus 226 ~~~~~-----~~~~~l~~~l~~--~~~~LlVlDdv~ 254 (483)
..... ...-.+.+++.. ++.+||++||+-
T Consensus 226 ~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 226 DPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 11111 222345566663 589999999984
No 303
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.60 E-value=0.037 Score=45.91 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
-|.|+|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999865
No 304
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.60 E-value=0.076 Score=45.38 Aligned_cols=35 Identities=29% Similarity=0.546 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 151 VKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 151 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+.+ +.....--|+|+|.+|+|||||...+...
T Consensus 5 ~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 345555 44455677899999999999999999854
No 305
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.58 E-value=0.044 Score=52.90 Aligned_cols=26 Identities=23% Similarity=0.044 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....+++|+|++|+|||||++.+...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44579999999999999999999876
No 306
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.57 E-value=0.033 Score=49.81 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+|+|.|+.|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3579999999999999999988654
No 307
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.54 E-value=0.046 Score=49.77 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..++.+.|.||+||||++..+...+
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5788999999999999999998774
No 308
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.52 E-value=0.048 Score=46.52 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.....|+|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998765
No 309
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.51 E-value=0.06 Score=53.42 Aligned_cols=87 Identities=16% Similarity=0.193 Sum_probs=49.8
Q ss_pred ceEEEEEcCCCCcHHHHHH-HHHhhhccCCCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhcc-------cCCCCCC----
Q 011568 163 VSKIGVWGMGGIGKTTIMS-NINNKLHEKPNKFN-DVIWVTVSQPL-DLIKLQTEIATALKQ-------SLPENED---- 228 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~-~v~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~il~~l~~-------~~~~~~~---- 228 (483)
..-++|.|.+|+|||+||. .+.+. . .-+ .++++-+++.. .+.++.+++...=.. .......
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~---~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQ---Q--GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTC---C--TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred CCEEEEecCCCCCccHHHHHHHHHh---h--cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 3568899999999999964 66665 2 234 35677777644 355565555442110 1001110
Q ss_pred -HHHHHHHHHHHHhc-CCeEEEEEeCCC
Q 011568 229 -KVSRAGRLLRMLKA-KEKFVLILDDMW 254 (483)
Q Consensus 229 -~~~~~~~l~~~l~~-~~~~LlVlDdv~ 254 (483)
.......+.+++.+ ++.+||++||+-
T Consensus 238 ~a~~~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 238 LAPYTGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 11222233344433 599999999974
No 310
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.51 E-value=0.04 Score=45.95 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|.|+|.+|+|||||+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999999875
No 311
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.47 E-value=0.15 Score=51.02 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=37.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCC-HHHHHHHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLD-LIKLQTEI 215 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 215 (483)
...-++|.|..|+|||+|+.++.+. . +-+.++++-+++..+ +.++++++
T Consensus 226 kGqr~~I~g~~g~GKT~L~~~ia~~-~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 226 KGGTAAIPGPAGSGKTVTQHQLAKW-S----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp TTCEEEECSCCSHHHHHHHHHHHHH-S----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred cCCeEEeecCCCCCHHHHHHHHHhc-c----CCCEEEEEEecccHHHHHHHHHHH
Confidence 3467899999999999999999876 1 235678888887554 56666665
No 312
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.47 E-value=0.05 Score=48.80 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+|+|.|+.|+||||+++.+...
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999886
No 313
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.46 E-value=0.043 Score=53.04 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
++|+|.|+.|+||||||..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 689999999999999999999873
No 314
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.44 E-value=0.05 Score=49.01 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...|+|.|..|+||||+++.+.+.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999999883
No 315
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.44 E-value=0.042 Score=50.48 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.++|+|+.|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999876
No 316
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.43 E-value=0.048 Score=46.89 Aligned_cols=23 Identities=22% Similarity=0.001 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.++.|+|+.|+||||++..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 58899999999999999777766
No 317
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.42 E-value=0.046 Score=46.73 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 318
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.39 E-value=0.04 Score=50.41 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998765
No 319
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.36 E-value=0.14 Score=50.08 Aligned_cols=28 Identities=29% Similarity=0.167 Sum_probs=24.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 160 GDKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 160 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.....+++|+|+.|+|||||.+.+...+
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 4556799999999999999999998873
No 320
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.32 E-value=0.049 Score=52.05 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|.|+.|+|||||.+.++--
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 468999999999999999999865
No 321
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.31 E-value=0.061 Score=45.39 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999765
No 322
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.30 E-value=0.077 Score=49.62 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 151 VKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 151 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
++++...+.+ .+++|+|++|+|||||.+.+. .
T Consensus 156 i~~L~~~l~G---~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 156 IDELVDYLEG---FICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp HHHHHHHTTT---CEEEEECSTTSSHHHHHHHHH-S
T ss_pred HHHHHhhccC---cEEEEECCCCCCHHHHHHHHH-H
Confidence 5566666653 589999999999999999998 6
No 323
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.30 E-value=0.099 Score=45.46 Aligned_cols=50 Identities=20% Similarity=0.152 Sum_probs=33.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIAT 217 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 217 (483)
.|+|-|.-|+||||.++.+.+.+... .. .+++..-+......+..+.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~--g~-~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR--GK-KVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT--TC-CEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CC-cEEEEECCCCCcHHHHHHHHhh
Confidence 47889999999999999999885332 22 3444444444445555555553
No 324
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.29 E-value=0.057 Score=51.73 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=59.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLK 241 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 241 (483)
...+++|+|+.|+|||||.+.+...+..... ..++.+.-.-.+..... ..++.+.. ...+.......+...|.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~--~~i~t~ed~~e~~~~~~-~~~v~q~~----~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKY--HHILTIEDPIEFVHESK-KCLVNQRE----VHRDTLGFSEALRSALR 194 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCC--CEEEEEESSCCSCCCCS-SSEEEEEE----BTTTBSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCC--cEEEEccCcHHhhhhcc-ccceeeee----eccccCCHHHHHHHHhh
Confidence 3459999999999999999998776422110 11222211111000000 00000000 01111233446777888
Q ss_pred cCCeEEEEEeCCCCccCccccccCCCCCCCCcEEEEecCChhHh
Q 011568 242 AKEKFVLILDDMWEAFPLEEVGIPEPNEENGCKLVITTRSCRVC 285 (483)
Q Consensus 242 ~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~s~ilvTtR~~~v~ 285 (483)
. .+=+|++|++.+.+.+..+... ...|..||+||......
T Consensus 195 ~-~PdvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 E-DPDIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp S-CCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHH
T ss_pred h-CcCEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHH
Confidence 7 8889999999865554433222 12355688888765443
No 325
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.29 E-value=0.044 Score=46.13 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.--|+|+|.+|+|||||+..+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346899999999999999998765
No 326
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.28 E-value=0.16 Score=44.47 Aligned_cols=49 Identities=22% Similarity=0.288 Sum_probs=31.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIA 216 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 216 (483)
+.|+|-|+.|+||||+++.+.+.+. ..++ ++...-+......+.+++++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~---~~~~-v~~~~eP~~t~~g~~ir~~l 51 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV---KDYD-VIMTREPGGVPTGEEIRKIV 51 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT---TTSC-EEEEESSTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH---CCCC-EEEeeCCCCChHHHHHHHHH
Confidence 4689999999999999999999852 2343 33333333333444444444
No 327
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.26 E-value=0.11 Score=49.17 Aligned_cols=49 Identities=27% Similarity=0.306 Sum_probs=34.6
Q ss_pred hcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHH
Q 011568 158 LMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLI 209 (483)
Q Consensus 158 L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 209 (483)
+.+...+++.+.|-||+||||+|..++..+.+. =..++-|+.....++.
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~---g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV---RRSVLLLSTDPAHNLS 59 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTS---SSCEEEEECCSSCHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhC---CCcEEEEECCCCCChh
Confidence 344556889999999999999999998885322 2346777766544433
No 328
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.25 E-value=0.046 Score=47.02 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999876
No 329
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.24 E-value=0.048 Score=45.37 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999999865
No 330
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.23 E-value=0.1 Score=51.88 Aligned_cols=92 Identities=18% Similarity=0.206 Sum_probs=53.0
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHhhhccC----CCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhcc------cCCCCCC
Q 011568 162 KVSKIGVWGMGGIGKTTIM-SNINNKLHEK----PNKFN-DVIWVTVSQPL-DLIKLQTEIATALKQ------SLPENED 228 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~----~~~f~-~~~wv~~~~~~-~~~~~~~~il~~l~~------~~~~~~~ 228 (483)
...-++|.|.+|+|||+|| ..+.+. ... .++-+ .++++-+++.. .+.++.+.+...=.. ....+..
T Consensus 161 rGQR~~I~g~~g~GKT~Lal~~I~~q-~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p 239 (510)
T 2ck3_A 161 RGQRELIIGDRQTGKTSIAIDTIINQ-KRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDA 239 (510)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHHT-HHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSC
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHH-HhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCC
Confidence 3467899999999999995 466666 221 12233 36777777644 466666666552111 0011122
Q ss_pred HHH------HHHHHHHHHhc-CCeEEEEEeCCC
Q 011568 229 KVS------RAGRLLRMLKA-KEKFVLILDDMW 254 (483)
Q Consensus 229 ~~~------~~~~l~~~l~~-~~~~LlVlDdv~ 254 (483)
... ....+.+++.+ ++.+||++||+-
T Consensus 240 ~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 240 APLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 111 11234444543 589999999984
No 331
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.22 E-value=0.12 Score=48.24 Aligned_cols=42 Identities=26% Similarity=0.344 Sum_probs=30.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 011568 160 GDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ 204 (483)
Q Consensus 160 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 204 (483)
....++|+|+|-||+||||+|..++..+.+. .. .++-|....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~--G~-~VlliD~D~ 79 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GK-RVLQIGCDP 79 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TC-CEEEEEESS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHC--CC-eEEEEeCCC
Confidence 3457899999999999999999998885432 11 466676654
No 332
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.21 E-value=0.062 Score=45.63 Aligned_cols=36 Identities=31% Similarity=0.559 Sum_probs=26.5
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 151 VKEIWEDLMG-DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 151 ~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..++++.+.. ....-|+|+|.+|+|||||...+...
T Consensus 5 ~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 5 FSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp HHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred HHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3444554444 45667899999999999999988743
No 333
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.21 E-value=0.1 Score=49.84 Aligned_cols=50 Identities=26% Similarity=0.334 Sum_probs=33.8
Q ss_pred hcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCH
Q 011568 158 LMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDL 208 (483)
Q Consensus 158 L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 208 (483)
+.....+++.+.|-||+||||+|..++..+.... .=..++-|+.....++
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~-~g~~vllid~D~~~~l 62 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQ-PNEQFLLISTDPAHNL 62 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHC-TTSCEEEEECCSSCHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhc-CCCeEEEEECCCCCCh
Confidence 3445568999999999999999999988743101 1123666666544433
No 334
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.19 E-value=0.048 Score=50.61 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+++|+|+.|+|||||.+.++.-
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3468999999999999999998765
No 335
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.16 E-value=0.031 Score=57.61 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
-|.++|++|+|||+||+.+++.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 5889999999999999999876
No 336
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.16 E-value=0.049 Score=46.71 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999865
No 337
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.14 E-value=0.039 Score=51.62 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+++|+|+.|+|||||++.+..-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 3578999999999999999998764
No 338
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.14 E-value=0.097 Score=50.05 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+..+|+|+|++|+|||||...+...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999875
No 339
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.11 E-value=0.055 Score=44.96 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 011568 166 IGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 166 i~I~G~~GiGKTtLa~~v~~~ 186 (483)
|+|+|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999765
No 340
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.11 E-value=0.05 Score=45.49 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999865
No 341
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.11 E-value=0.051 Score=45.34 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999865
No 342
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.11 E-value=0.053 Score=45.04 Aligned_cols=22 Identities=32% Similarity=0.595 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
-|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998765
No 343
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.08 E-value=0.088 Score=51.85 Aligned_cols=91 Identities=13% Similarity=0.158 Sum_probs=54.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCC-CC-CeEEEEEeCCC-CCHHHHHHHHHHHhccc------CCCCCCHH---
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPN-KF-NDVIWVTVSQP-LDLIKLQTEIATALKQS------LPENEDKV--- 230 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f-~~~~wv~~~~~-~~~~~~~~~il~~l~~~------~~~~~~~~--- 230 (483)
-.-++|.|.+|+|||+|+.++++. ....+ .- +.++++-++.. ..+.++.+++...=... ...+....
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~-~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~ 230 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQ-ASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERI 230 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHH-CBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH-HhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHH
Confidence 356778899999999999999988 32211 11 24566666654 34667777776541110 00111111
Q ss_pred ---HHHHHHHHHHh--cCCeEEEEEeCCC
Q 011568 231 ---SRAGRLLRMLK--AKEKFVLILDDMW 254 (483)
Q Consensus 231 ---~~~~~l~~~l~--~~~~~LlVlDdv~ 254 (483)
...-.+.+++. .++.+||++||+-
T Consensus 231 ~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 231 VTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 22233455555 2699999999974
No 344
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.08 E-value=0.054 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+.+|+|+.|+|||||+..++--
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 48899999999999999998765
No 345
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.06 E-value=0.053 Score=45.37 Aligned_cols=23 Identities=26% Similarity=0.689 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 346
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.06 E-value=0.051 Score=45.95 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999865
No 347
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.05 E-value=0.052 Score=45.33 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999999876
No 348
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.04 E-value=0.053 Score=51.80 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|.|+.|+|||||.+.++--
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999998765
No 349
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.04 E-value=0.055 Score=45.02 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
No 350
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.03 E-value=0.061 Score=46.28 Aligned_cols=26 Identities=19% Similarity=0.495 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34577999999999999999999865
No 351
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.03 E-value=0.064 Score=47.21 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....|.|+|++|+|||||+..+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999876
No 352
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.01 E-value=0.049 Score=51.40 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..++++|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999999865
No 353
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.01 E-value=0.053 Score=46.45 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999888765
No 354
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.00 E-value=0.052 Score=45.38 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 35889999999999999998643
No 355
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.00 E-value=0.053 Score=45.88 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..-|+|+|.+|+|||||+..+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998775
No 356
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.00 E-value=0.06 Score=51.52 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+++|+|+.|+|||||++.+..-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 3478999999999999999998765
No 357
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.00 E-value=0.052 Score=46.36 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999876
No 358
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.97 E-value=0.069 Score=46.32 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....|+|+|.+|+|||||...+...
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998754
No 359
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.97 E-value=0.061 Score=51.47 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+++|.|+.|+|||||.+.++.-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 3468999999999999999999865
No 360
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.94 E-value=0.061 Score=45.40 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999998765
No 361
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.93 E-value=0.056 Score=45.61 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||...+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999865
No 362
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.91 E-value=0.063 Score=51.47 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+++|+|+.|+|||||.+.++.-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 3468999999999999999998865
No 363
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.89 E-value=0.063 Score=51.72 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||.+.++.-
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcC
Confidence 468999999999999999999865
No 364
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.89 E-value=0.069 Score=47.56 Aligned_cols=25 Identities=32% Similarity=0.366 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...|+|.|+.|+||||+++.+.+.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999885
No 365
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=92.88 E-value=0.22 Score=50.06 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=35.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCC-CCHHHHHHHH
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQP-LDLIKLQTEI 215 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i 215 (483)
.-.-++|.|..|+|||+|+.++.+. . +-+.++++-++.. ..+.++++++
T Consensus 231 rGqr~~Ifgg~g~GKT~L~~~ia~~-~----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 231 KGGAAAVPGPFGAGKTVVQHQIAKW-S----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHH-S----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred CCCEEeeecCCCccHHHHHHHHHhc-c----CCCEEEEEEecccHHHHHHHHHHH
Confidence 3468999999999999999999887 2 2356777777764 3455555544
No 366
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.85 E-value=0.056 Score=45.13 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35889999999999999999865
No 367
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.82 E-value=0.055 Score=45.07 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
-|+|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999988654
No 368
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.82 E-value=0.042 Score=50.29 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....|+|.|+.|+||||+++.+.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999887
No 369
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.82 E-value=0.065 Score=46.74 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=21.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 160 GDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 160 ~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....--|+|+|.+|+|||||+..+.+.
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 344457899999999999999998865
No 370
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.80 E-value=0.085 Score=50.92 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
....+++|+|+.|+|||||++.+...+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445799999999999999999998763
No 371
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.79 E-value=0.059 Score=46.22 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+.+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 46889999999999999998875
No 372
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.78 E-value=0.058 Score=45.60 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..-|+|+|.+|+|||||...+...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999876
No 373
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.78 E-value=0.07 Score=47.19 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 011568 165 KIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ 204 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 204 (483)
.|.+.|.||+||||++..+...+.. ..++ +..+.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~--~G~~-V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR--QGVR-VMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH--TTCC-EEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH--CCCC-EEEEEeCC
Confidence 4888999999999999998888432 2233 45555544
No 374
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.73 E-value=0.062 Score=51.78 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||.+.++.-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcC
Confidence 468999999999999999998865
No 375
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.73 E-value=0.068 Score=51.42 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+++|.|+.|+|||||.+.++.-
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 3478999999999999999998864
No 376
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.70 E-value=0.066 Score=44.64 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999864
No 377
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.67 E-value=0.16 Score=51.48 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+++|.|++|+|||||++.++...
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999998773
No 378
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.63 E-value=0.066 Score=44.81 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.-|+|+|.+|+|||||...+...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999765
No 379
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.63 E-value=0.065 Score=46.15 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999875
No 380
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.60 E-value=0.057 Score=46.18 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
-|+|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998875
No 381
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.59 E-value=0.057 Score=51.48 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||.+.++.-
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCccHHHHHHHHHcC
Confidence 468999999999999999999865
No 382
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.58 E-value=0.067 Score=45.11 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..-|.|+|.+|+|||||+..+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999876
No 383
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.58 E-value=0.078 Score=45.46 Aligned_cols=24 Identities=17% Similarity=0.487 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...|+|+|.+|+|||||+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999876
No 384
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.56 E-value=0.067 Score=45.45 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.--|.|+|.+|+|||||+..+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999865
No 385
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.55 E-value=0.088 Score=50.07 Aligned_cols=26 Identities=23% Similarity=0.607 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....+++|+|++|+|||||.+.+...
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999999865
No 386
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.55 E-value=0.071 Score=46.00 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||...+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998753
No 387
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.55 E-value=0.066 Score=45.63 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
-|+|+|.+|+|||||+..+.+.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999875
No 388
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.53 E-value=0.065 Score=47.30 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+|+|.|+.|+||||+++.+...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999876
No 389
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.53 E-value=0.49 Score=46.79 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=51.5
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHhhhccCCCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhccc------CCCCCCHHH-
Q 011568 162 KVSKIGVWGMGGIGKTTIM-SNINNKLHEKPNKFN-DVIWVTVSQPL-DLIKLQTEIATALKQS------LPENEDKVS- 231 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~il~~l~~~------~~~~~~~~~- 231 (483)
...-++|.|..|+|||+|+ ..+.+. . +-+ .++++-+++.. .+.++.+++...=... ...+.....
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n~---~--~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r 235 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIINQ---R--DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQ 235 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHTT---S--SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHH
T ss_pred cCCEEEeecCCCCCcchHHHHHHHhh---c--cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHH
Confidence 3457889999999999996 456554 2 223 35788887754 4666666655431110 011112111
Q ss_pred -----HHHHHHHHHhc-CCeEEEEEeCCC
Q 011568 232 -----RAGRLLRMLKA-KEKFVLILDDMW 254 (483)
Q Consensus 232 -----~~~~l~~~l~~-~~~~LlVlDdv~ 254 (483)
....+.+++.+ ++.+||++||+-
T Consensus 236 ~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 236 YLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 11223344433 599999999984
No 390
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.52 E-value=0.066 Score=45.61 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.--|.|+|.+|+|||||+..+.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346889999999999999999865
No 391
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.51 E-value=0.067 Score=45.11 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999865
No 392
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.49 E-value=0.11 Score=48.53 Aligned_cols=33 Identities=30% Similarity=0.552 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 151 VKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 151 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
++++..++.. .+++|+|++|+|||||.+.+...
T Consensus 160 v~~lf~~l~g---eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLKG---KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHSS---SEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhcC---CeEEEECCCCCcHHHHHHHhccc
Confidence 5566666654 58999999999999999999765
No 393
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.48 E-value=0.068 Score=51.51 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...++|+|+.|+|||||++.+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 394
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.48 E-value=0.074 Score=44.79 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.-|.|.|++|+||||||..+..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 56889999999999999999875
No 395
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.46 E-value=0.052 Score=45.92 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999999875
No 396
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.41 E-value=0.074 Score=45.51 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999875
No 397
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.40 E-value=0.072 Score=45.80 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.--|+|+|.+|+|||||+..+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999998875
No 398
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.38 E-value=0.055 Score=53.31 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+|.|+|++|+||||++..++..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998874
No 399
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.38 E-value=0.073 Score=45.24 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
-|+|+|.+|+|||||...+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999998765
No 400
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.37 E-value=0.31 Score=58.42 Aligned_cols=79 Identities=20% Similarity=0.204 Sum_probs=47.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKAK 243 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 243 (483)
+-+.++|++|+|||++|+.+... . ..+ ..+.++.+...+...+...+-..+......... +..--..+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~---~-~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~-------~~~P~~~g 1335 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRN---S-SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGL-------TLLPKSDI 1335 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS---C-SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTE-------EEEEBSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhc---C-CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCc-------cccCCCCC
Confidence 67889999999999999888766 1 122 356677777777766655555444321000000 00000023
Q ss_pred CeEEEEEeCCC
Q 011568 244 EKFVLILDDMW 254 (483)
Q Consensus 244 ~~~LlVlDdv~ 254 (483)
+++++.+||++
T Consensus 1336 k~~VlFiDEin 1346 (2695)
T 4akg_A 1336 KNLVLFCDEIN 1346 (2695)
T ss_dssp SCEEEEEETTT
T ss_pred ceEEEEecccc
Confidence 78999999975
No 401
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.36 E-value=0.056 Score=45.68 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.--|+|+|.+|+|||||+..+...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998765
No 402
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.35 E-value=0.083 Score=46.13 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.+|+|.|+.|+||||+++.++..+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999983
No 403
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.35 E-value=0.074 Score=45.20 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..-|+|+|.+|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 346889999999999999999865
No 404
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.34 E-value=0.074 Score=45.04 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999998865
No 405
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.31 E-value=0.074 Score=45.00 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|.|+|.+|+|||||+..+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999998865
No 406
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.31 E-value=0.079 Score=45.17 Aligned_cols=26 Identities=27% Similarity=0.532 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...--|+|+|.+|+|||||...+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999876
No 407
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.30 E-value=0.073 Score=45.11 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..-|+|+|.+|+|||||+..+.+.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999999865
No 408
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.30 E-value=0.08 Score=47.10 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..++|.|++|+||||+|+.+...+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998873
No 409
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.29 E-value=0.078 Score=45.52 Aligned_cols=23 Identities=43% Similarity=0.388 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||++.+.+.
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999776655
No 410
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.25 E-value=0.079 Score=45.50 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 46889999999999999999876
No 411
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.24 E-value=0.076 Score=46.07 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..-|+|+|.+|+|||||+..+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999865
No 412
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.24 E-value=0.061 Score=46.58 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINN 185 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~ 185 (483)
.-.|+|+|.+|+|||||+..+..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 45789999999999999999853
No 413
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.23 E-value=0.076 Score=45.82 Aligned_cols=25 Identities=24% Similarity=0.565 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..--|+|+|.+|+|||||+..+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999999875
No 414
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.22 E-value=0.054 Score=51.81 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+++|+|+.|+|||||.+.++--
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3468999999999999999998864
No 415
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.20 E-value=0.076 Score=45.79 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=22.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 160 GDKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 160 ~~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....--|+|+|.+|+|||||+..+...
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhC
Confidence 334456999999999999999998654
No 416
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.20 E-value=0.08 Score=44.75 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||...+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999998875
No 417
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.14 E-value=0.079 Score=46.05 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.--|+|+|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999999876
No 418
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.14 E-value=0.087 Score=51.02 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+++|+|+.|+|||||.+.+..-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 3578999999999999999998764
No 419
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.13 E-value=0.056 Score=47.22 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.....|+|+|.+|+|||||.+.+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999988654
No 420
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.10 E-value=0.078 Score=46.32 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.--|+|+|.+|+|||||+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999876
No 421
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.10 E-value=0.14 Score=46.83 Aligned_cols=38 Identities=29% Similarity=0.598 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ 204 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 204 (483)
++|+|.|-||+||||+|..++..+.+. . ..++-|....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~--G-~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM--G-KTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT--T-CCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC--C-CcEEEEcCCC
Confidence 578889999999999999999885422 2 2466666643
No 422
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.08 E-value=0.096 Score=52.98 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...+|.++|++|+||||+|+.+...+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998874
No 423
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.07 E-value=0.081 Score=45.63 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.--|+|+|.+|+|||||+..+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345889999999999999999876
No 424
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.06 E-value=0.083 Score=46.01 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.--|+|+|.+|+|||||+..+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356899999999999999998765
No 425
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.05 E-value=0.07 Score=51.32 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+++|+|+.|+|||||++.+...
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999876
No 426
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.04 E-value=0.082 Score=46.31 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999875
No 427
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.04 E-value=0.08 Score=45.55 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||...+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999876
No 428
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.04 E-value=0.084 Score=45.19 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.--|+|+|.+|+|||||+..+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999876
No 429
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.04 E-value=0.22 Score=43.85 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...|.|.|+.|+||||+++.+.+.+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999984
No 430
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.04 E-value=0.083 Score=46.69 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
-|.|+|.+|+|||+|+..+.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4789999999999999998765
No 431
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.03 E-value=0.085 Score=45.21 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||...+.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999865
No 432
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.99 E-value=0.099 Score=51.02 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+++|+|+.|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 3469999999999999999999874
No 433
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.98 E-value=0.082 Score=45.83 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 434
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.97 E-value=0.087 Score=45.24 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||...+.+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45889999999999999999865
No 435
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.97 E-value=0.15 Score=51.21 Aligned_cols=27 Identities=4% Similarity=-0.074 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhc
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKLH 188 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 188 (483)
...+|.+.|++|+||||+|+.+...+.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999953
No 436
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.95 E-value=0.087 Score=45.32 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999876
No 437
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.92 E-value=0.088 Score=45.67 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..-|+|+|.+|+|||||+..+...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 456899999999999999999876
No 438
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.88 E-value=0.09 Score=45.18 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.--|+|+|.+|+|||||+..+...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999876
No 439
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.84 E-value=0.073 Score=49.75 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 011568 165 KIGVWGMGGIGKTTIMSNINN 185 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~ 185 (483)
-|+|+|++|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 359999999999999999764
No 440
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.81 E-value=0.091 Score=46.24 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINN 185 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~ 185 (483)
.--|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999999874
No 441
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.81 E-value=0.079 Score=45.16 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
++.|+|.+|+|||++|.++...
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3789999999999999998753
No 442
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.80 E-value=0.091 Score=45.47 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..--|+|+|.+|+|||||+..+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3467899999999999999999765
No 443
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.79 E-value=0.083 Score=45.63 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.--|.|+|.+|+|||||++.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 356899999999999999877664
No 444
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.79 E-value=0.093 Score=44.93 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.--|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999998765
No 445
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.78 E-value=0.089 Score=45.53 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.--|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999998865
No 446
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.75 E-value=0.088 Score=45.69 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.--|+|+|.+|+|||||+..+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356889999999999999998765
No 447
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.73 E-value=0.096 Score=49.96 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....+++|+|+.|+|||||.+.+...
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34579999999999999999999988
No 448
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.72 E-value=0.096 Score=44.91 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999876
No 449
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=91.71 E-value=0.19 Score=45.08 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=29.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHH
Q 011568 166 IGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLI 209 (483)
Q Consensus 166 i~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 209 (483)
|+|.|-||+||||+|..++..+.+. . ..++-|......+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~--g-~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASD--Y-DKIYAVDGDPDSCLG 43 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTT--C-SCEEEEEECTTSCHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHC--C-CeEEEEeCCCCcChH
Confidence 6679999999999999999885432 2 347777776544443
No 450
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.69 E-value=0.096 Score=45.12 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 346899999999999999999864
No 451
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.66 E-value=0.12 Score=46.01 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....|+|+|.+|+|||||+..+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999765
No 452
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.61 E-value=0.086 Score=44.79 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||...+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999865
No 453
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.60 E-value=0.095 Score=45.58 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999865
No 454
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=91.58 E-value=0.1 Score=48.77 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 468999999999999999999865
No 455
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.58 E-value=0.11 Score=49.44 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=24.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 160 GDKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 160 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+..+|+|+|.+|+|||||+..+...+
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999997663
No 456
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.56 E-value=0.24 Score=51.68 Aligned_cols=61 Identities=16% Similarity=0.124 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 011568 150 IVKEIWEDLMGDKVSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIA 216 (483)
Q Consensus 150 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 216 (483)
..+.+...|... .+..|+||+|+|||+.+.++...+... ...+.++......+..++..+.
T Consensus 194 Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~----~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 194 QKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQ----GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEcCchHHHHHHHHHHH
Confidence 445555556543 477899999999998777666554322 2356777666655666666553
No 457
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.53 E-value=0.13 Score=47.60 Aligned_cols=39 Identities=31% Similarity=0.520 Sum_probs=28.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCC
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQ 204 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 204 (483)
.++|+|.|-||+||||+|..++..+.+. . ..++-|....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~--G-~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM--G-KKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT--T-CCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC--C-CeEEEEecCC
Confidence 3678889999999999999999885432 1 2366666644
No 458
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.52 E-value=0.077 Score=50.29 Aligned_cols=86 Identities=17% Similarity=0.202 Sum_probs=47.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVSRAGRLLRMLKA 242 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 242 (483)
..+++|+|+.|+|||||++.+...+ .. -...+.+.-......... . +.++.-. . ........+...+..
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~---~~-~~g~i~i~~~~e~~~~~~-~---~~i~~~~-g--gg~~~r~~la~aL~~ 239 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI---PK-EERIISIEDTEEIVFKHH-K---NYTQLFF-G--GNITSADCLKSCLRM 239 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS---CT-TSCEEEEESSCCCCCSSC-S---SEEEEEC-B--TTBCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---cC-CCcEEEECCeeccccccc-h---hEEEEEe-C--CChhHHHHHHHHhhh
Confidence 3589999999999999999998762 21 234455442211110000 0 0000000 0 122334456667776
Q ss_pred CCeEEEEEeCCCCccCcc
Q 011568 243 KEKFVLILDDMWEAFPLE 260 (483)
Q Consensus 243 ~~~~LlVlDdv~~~~~~~ 260 (483)
++-+|++|++.+.+.++
T Consensus 240 -~p~ilildE~~~~e~~~ 256 (330)
T 2pt7_A 240 -RPDRIILGELRSSEAYD 256 (330)
T ss_dssp -CCSEEEECCCCSTHHHH
T ss_pred -CCCEEEEcCCChHHHHH
Confidence 77888999987644333
No 459
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.51 E-value=0.1 Score=49.76 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+++|+|++|+|||||++.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 58999999999999999999865
No 460
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.44 E-value=0.097 Score=46.00 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+...
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999764
No 461
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.39 E-value=0.1 Score=46.80 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 3567999999999999999999875
No 462
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.39 E-value=0.087 Score=45.34 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+...
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999998765
No 463
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.36 E-value=0.085 Score=45.47 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...|+|+|.+|+|||||...+...
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999998765
No 464
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.33 E-value=0.11 Score=44.71 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999876
No 465
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.29 E-value=0.14 Score=42.28 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..+.+|+|+.|+||||+...++--
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 368899999999999999988754
No 466
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.28 E-value=0.11 Score=51.80 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...+|.++|++|+||||+++.+...+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998874
No 467
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.26 E-value=0.11 Score=45.14 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.--|+|+|.+|+|||||+..+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 456899999999999999998765
No 468
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.25 E-value=0.098 Score=51.96 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...+++|+|+.|+|||||++.++.-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4578999999999999999998875
No 469
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.25 E-value=0.11 Score=45.22 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.-|+|+|.+|+|||||+..+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998875
No 470
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.23 E-value=0.11 Score=45.40 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+.+.
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999998865
No 471
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.22 E-value=0.11 Score=45.26 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..-|+|+|.+|+|||||+..+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999998865
No 472
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.21 E-value=0.092 Score=53.38 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...+|+|+|+.|+|||||++.+...+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 34789999999999999999999884
No 473
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.13 E-value=0.069 Score=45.36 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=9.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999988754
No 474
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.10 E-value=0.12 Score=44.90 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999998875
No 475
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.10 E-value=0.12 Score=45.44 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+...
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45889999999999999999875
No 476
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.08 E-value=0.15 Score=52.07 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...+|.|.|++|+||||+|+.+...+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998884
No 477
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.04 E-value=0.11 Score=50.90 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 011568 166 IGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 166 i~I~G~~GiGKTtLa~~v~~~ 186 (483)
++|+|+.|+|||||.+.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999998765
No 478
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.04 E-value=0.084 Score=45.24 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||...+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 56889999999999999999876
No 479
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.02 E-value=0.16 Score=45.00 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
..+|+|.|+.|+||||+|+.+...+
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 4699999999999999999999883
No 480
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=90.95 E-value=0.19 Score=43.63 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....+|+|+|++|+||+|+|..+.+.
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~ 34 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSR 34 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHH
Confidence 34579999999999999999988775
No 481
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.93 E-value=0.14 Score=46.91 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999765
No 482
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=90.91 E-value=0.2 Score=50.07 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=34.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCC-CCHHHHHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQP-LDLIKLQTEI 215 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i 215 (483)
..-++|.|..|+|||+|+.++.+. . +-+.++++-++.. ..+.+++.++
T Consensus 221 Gqr~~Ifg~~g~GKT~l~~~ia~~-~----~~~v~V~~~iGER~~Ev~e~~~~~ 269 (578)
T 3gqb_A 221 GGTAAIPGPFGSGKSVTQQSLAKW-S----NADVVVYVGSGERGNEMTDVLVEF 269 (578)
T ss_dssp TCEEEECCCTTSCHHHHHHHHHHH-S----SCSEEEEEEEEECHHHHHHHHTTG
T ss_pred CCEEeeeCCCCccHHHHHHHHHhc-c----CCCEEEEEEecccHHHHHHHHHHH
Confidence 467899999999999999999887 2 2356777777764 3344555443
No 483
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.78 E-value=0.18 Score=43.71 Aligned_cols=43 Identities=28% Similarity=0.369 Sum_probs=30.2
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHH
Q 011568 164 SKIGVW-GMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLI 209 (483)
Q Consensus 164 ~vi~I~-G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 209 (483)
++|+|+ +-||+||||+|..++..+.+. + ..++-+......+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~-g--~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRS-G--YNIAVVDTDPQMSLT 45 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHT-T--CCEEEEECCTTCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHC-C--CeEEEEECCCCCCHH
Confidence 577787 679999999999999885432 1 246777776544433
No 484
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.70 E-value=0.13 Score=45.21 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.--|+|+|.+|+|||||+..+...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999998765
No 485
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.64 E-value=0.14 Score=50.54 Aligned_cols=26 Identities=15% Similarity=0.507 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....+++|+|+.|+|||||++.+...
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44579999999999999999999887
No 486
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.61 E-value=0.16 Score=52.23 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
...+|.|.|++|+||||+|+.+...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998874
No 487
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.49 E-value=0.12 Score=50.51 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 011568 166 IGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 166 i~I~G~~GiGKTtLa~~v~~~ 186 (483)
|+|+|++|+|||||++.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 599999999999999999875
No 488
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=90.47 E-value=0.97 Score=44.79 Aligned_cols=22 Identities=18% Similarity=0.501 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 011568 165 KIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 165 vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.|+|+|.+|+|||||...+...
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4899999999999999999876
No 489
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.44 E-value=0.15 Score=50.80 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.+++|+|+.|+|||||.+.+..-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 79999999999999999998876
No 490
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.42 E-value=0.099 Score=55.96 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=32.7
Q ss_pred cccccchHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 011568 141 NLAGKRTGKIVKEIWEDLMG-------------DKVSKIGVWGMGGIGKTTIMSNINNKL 187 (483)
Q Consensus 141 ~~vGr~~~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 187 (483)
.++|.+ +.++.+.+.+.- .....+.++|++|+|||+||+.+++.+
T Consensus 478 di~gl~--~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 478 DIGGLE--DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp SSSCCC--CHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred ccccch--hhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 466766 456666555431 123568899999999999999999983
No 491
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=90.28 E-value=0.15 Score=44.99 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
--|+|+|.+|+|||||+..+...
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998865
No 492
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=90.24 E-value=0.14 Score=46.44 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...|+|+|.+|+|||||...+...
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999765
No 493
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=90.16 E-value=0.11 Score=45.91 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 161 DKVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 161 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
.....|+|+|.+|+|||||...+...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34567899999999999999999876
No 494
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.10 E-value=0.36 Score=42.20 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=30.0
Q ss_pred EEEE-EcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHH
Q 011568 165 KIGV-WGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIK 210 (483)
Q Consensus 165 vi~I-~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 210 (483)
+|+| -+-||+||||++..++..+.+. . .++-+......+...
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~--g--~VlliD~D~q~~~~~ 44 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQ--G--ETLLIDGDPNRSATG 44 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTT--S--CEEEEEECTTCHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhc--C--CEEEEECCCCCCHHH
Confidence 5666 4789999999999999885332 2 577788766554433
No 495
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.07 E-value=0.25 Score=46.60 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=31.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccCCCCCCeEEEEEeCCCCCHHHH
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNKLHEKPNKFNDVIWVTVSQPLDLIKL 211 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 211 (483)
..++.+.|-||+||||+|..++..+.+. =..++-|+.....++...
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~---G~rVLlvD~D~~~~l~~~ 59 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARS---GKKTLVISTDPAHSLSDS 59 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEECCSSCCHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHC---CCcEEEEeCCCCcCHHHH
Confidence 3677788999999999999998875432 123666776555554433
No 496
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=90.04 E-value=0.32 Score=45.06 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 162 KVSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 162 ~~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
....|+|+|.+|+|||||...+...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 3568999999999999999999865
No 497
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=89.99 E-value=0.18 Score=45.81 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 011568 164 SKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 164 ~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
+.|+|+|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999765
No 498
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=89.97 E-value=0.18 Score=44.11 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINN 185 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~ 185 (483)
.-.|+|+|..|+||||+++.+..
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998865
No 499
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=89.93 E-value=0.42 Score=47.16 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...|+|+|.+|+|||||...+...
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CceEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999865
No 500
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=89.91 E-value=0.18 Score=47.24 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 011568 163 VSKIGVWGMGGIGKTTIMSNINNK 186 (483)
Q Consensus 163 ~~vi~I~G~~GiGKTtLa~~v~~~ 186 (483)
...|+|+|.+|+|||||...+...
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 578999999999999999999865
Done!