Query 011569
Match_columns 483
No_of_seqs 254 out of 527
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 02:49:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011569.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011569hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04784 DUF547: Protein of un 100.0 2.1E-39 4.5E-44 286.4 10.6 112 262-399 1-117 (117)
2 PF14389 Lzipper-MIP1: Leucine 99.7 1.8E-16 3.8E-21 133.8 6.7 60 1-60 28-88 (88)
3 KOG4010 Coiled-coil protein TP 55.7 19 0.00041 34.9 4.6 18 28-45 46-63 (208)
4 PRK14127 cell division protein 54.9 22 0.00047 31.6 4.5 28 29-56 40-67 (109)
5 PF06698 DUF1192: Protein of u 53.4 19 0.00041 28.5 3.5 25 27-51 22-46 (59)
6 PF09457 RBD-FIP: FIP domain ; 51.1 30 0.00064 26.3 4.1 29 29-57 3-38 (48)
7 PF04201 TPD52: Tumour protein 44.9 41 0.00089 31.9 5.0 24 22-45 25-48 (162)
8 PF07716 bZIP_2: Basic region 39.6 76 0.0016 24.0 5.0 27 28-54 27-53 (54)
9 PRK01203 prefoldin subunit alp 38.3 54 0.0012 30.0 4.6 29 28-56 2-30 (130)
10 smart00338 BRLZ basic region l 36.4 88 0.0019 24.4 5.0 26 29-54 29-54 (65)
11 PF07106 TBPIP: Tat binding pr 33.4 56 0.0012 30.5 4.0 27 28-54 111-137 (169)
12 COG3937 Uncharacterized conser 32.9 68 0.0015 28.4 4.1 35 22-56 64-106 (108)
13 PF13107 DUF3964: Protein of u 31.2 22 0.00048 30.7 0.8 16 263-279 89-104 (109)
14 smart00338 BRLZ basic region l 30.3 1.5E+02 0.0033 23.1 5.5 24 34-57 27-50 (65)
15 PF11932 DUF3450: Protein of u 28.9 1.3E+02 0.0027 30.0 5.9 36 25-60 48-83 (251)
16 PF06428 Sec2p: GDP/GTP exchan 28.5 1.5E+02 0.0033 25.8 5.6 30 33-62 8-37 (100)
17 PF11544 Spc42p: Spindle pole 26.1 1.7E+02 0.0037 24.4 5.1 33 25-57 4-36 (76)
18 PF06005 DUF904: Protein of un 25.9 3.6E+02 0.0078 22.1 7.0 29 25-53 10-38 (72)
19 PRK10265 chaperone-modulator p 24.3 1.2E+02 0.0025 26.2 4.1 23 28-50 73-95 (101)
20 PRK11239 hypothetical protein; 24.1 85 0.0018 31.1 3.5 22 35-56 185-206 (215)
21 PF09340 NuA4: Histone acetylt 23.5 1.5E+02 0.0032 24.7 4.4 32 27-58 3-34 (80)
22 PF11853 DUF3373: Protein of u 23.2 85 0.0019 34.8 3.7 28 29-56 27-54 (489)
23 PTZ00008 (NAP-S) nucleosome as 23.0 1E+02 0.0022 29.7 3.8 27 37-63 6-32 (185)
24 cd06890 PX_Bem1p The phosphoin 23.0 1.1E+02 0.0025 26.6 3.9 51 2-53 40-93 (112)
25 PF09006 Surfac_D-trimer: Lung 21.9 2.3E+02 0.005 21.5 4.6 27 35-61 1-27 (46)
26 PTZ00007 (NAP-L) nucleosome as 21.9 1.9E+02 0.004 30.7 5.8 41 23-63 34-85 (337)
27 KOG3749 Phosphoenolpyruvate ca 21.6 37 0.00079 37.4 0.6 31 410-440 523-564 (640)
28 PF08946 Osmo_CC: Osmosensory 21.3 1.2E+02 0.0027 22.8 3.1 23 26-48 4-34 (46)
29 PTZ00264 circumsporozoite-rela 20.9 1.5E+02 0.0032 27.0 4.1 27 27-53 47-73 (148)
30 PF03087 DUF241: Arabidopsis p 20.5 2.3E+02 0.0049 28.1 5.8 37 26-62 191-227 (231)
31 PRK05097 Ter macrodomain organ 20.4 1.3E+02 0.0029 27.8 3.8 30 427-456 51-80 (150)
32 KOG3856 Uncharacterized conser 20.3 1.7E+02 0.0038 26.6 4.4 26 28-53 19-44 (135)
33 PF04977 DivIC: Septum formati 20.2 2.4E+02 0.0052 22.2 5.0 28 29-56 20-47 (80)
No 1
>PF04784 DUF547: Protein of unknown function, DUF547; InterPro: IPR006869 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans and Arabidopsis thaliana (Mouse-ear cress).
Probab=100.00 E-value=2.1e-39 Score=286.40 Aligned_cols=112 Identities=46% Similarity=0.756 Sum_probs=105.3
Q ss_pred ccCCCCCCcchhHHHHHHHHHHHHHHHHHHhCCCCCchhh---hccccceeEEECCeEeeHHHHHHHhcccCCCCCChhH
Q 011569 262 KVNPVHLSSNEKLAFWINLYNALIMHAYLAYGVPRNDLKL---FSLMQKAAYTVGGHSYNAAAIEYMILKMKPPLHRPQI 338 (483)
Q Consensus 262 ~Vd~~~Ls~~EkLAFWINiYNalvmHa~L~~G~P~s~~k~---~~~~~k~~y~VGG~~~Sl~dIEh~ILR~~~p~~rp~~ 338 (483)
+||++.|+++||+|||||+||+|+||+++++|+|.+..++ ..+|.+..|+|||+.+||+||||+|||++.+
T Consensus 1 ~v~~~~l~~~e~lAFwIN~yNal~~h~~l~~~~~~s~~~~~~~~~~~~~~~y~Igg~~~SL~dIe~~ILR~~~~------ 74 (117)
T PF04784_consen 1 RVDLSSLSREEKLAFWINLYNALVLHAILENGPPKSILDRKLGGSFFSKVRYNIGGQRFSLDDIEHGILRGNRP------ 74 (117)
T ss_pred CcChHHCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhcccccccceEEEECCEEecHHHHHHhhccCCCC------
Confidence 5899999999999999999999999999999999888776 6899999999999999999999999998632
Q ss_pred HHHHHhhcccchhHHhhhccCCCCCeEEEEeccCCCCCCCcc--eeccchHHHHHHHHHHHHH
Q 011569 339 ALLLALQKLKVTEEQRKCAIDEYEPLVAFALSCGMYSSPAIS--IYTAKNVREELQEAQRDFI 399 (483)
Q Consensus 339 ~ll~~~~~~k~~d~r~~~~L~~~dPrvhFAL~cGs~S~P~lr--vYta~~v~~qLe~a~~efl 399 (483)
.++||||||||+||++|||+|| +|||++|++||++|+++||
T Consensus 75 --------------------~~~DprihFaL~cgs~s~P~lr~~~yt~~~l~~qL~~a~~~fi 117 (117)
T PF04784_consen 75 --------------------PWPDPRIHFALNCGSKSCPPLRREAYTAENLDEQLEEAAREFI 117 (117)
T ss_pred --------------------CCCCCceeeeeecCCCCChhhhhhccCHHHHHHHHHHHHHhhC
Confidence 1689999999999999999999 9999999999999999996
No 2
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=99.65 E-value=1.8e-16 Score=133.76 Aligned_cols=60 Identities=48% Similarity=0.600 Sum_probs=57.3
Q ss_pred ChhHHHHHHHhccCCcCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 1 MVLHVSLENAIKKNTMKL-SSPSCFSHEAQELLSNIALLETTVSKLEQEMVSLHFQLSQER 60 (483)
Q Consensus 1 ~~~h~aLerA~~r~~~~L-~~~~~lp~~~~eLl~eia~lE~eV~~LE~~v~~l~~~l~~E~ 60 (483)
++||.|||+|++++.|++ +.|.+||++|+|||+|||+||+||++||+||++||+++|+||
T Consensus 28 ~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~~q~ 88 (88)
T PF14389_consen 28 QDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQLFQQR 88 (88)
T ss_pred HHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 379999999999999988 788999999999999999999999999999999999999985
No 3
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=55.74 E-value=19 Score=34.85 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011569 28 AQELLSNIALLETTVSKL 45 (483)
Q Consensus 28 ~~eLl~eia~lE~eV~~L 45 (483)
-.||-+|++-+||||+-|
T Consensus 46 keelr~EL~kvEeEI~TL 63 (208)
T KOG4010|consen 46 KEELRTELAKVEEEIVTL 63 (208)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346777888888887766
No 4
>PRK14127 cell division protein GpsB; Provisional
Probab=54.86 E-value=22 Score=31.57 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 29 QELLSNIALLETTVSKLEQEMVSLHFQL 56 (483)
Q Consensus 29 ~eLl~eia~lE~eV~~LE~~v~~l~~~l 56 (483)
..|.+|++.|++|+.+||+++..+..++
T Consensus 40 e~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 40 EAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555566666666666666655433
No 5
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=53.41 E-value=19 Score=28.54 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 27 EAQELLSNIALLETTVSKLEQEMVS 51 (483)
Q Consensus 27 ~~~eLl~eia~lE~eV~~LE~~v~~ 51 (483)
.+.||=.=||.||.||.|+|.++..
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888899999999999988753
No 6
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=51.11 E-value=30 Score=26.30 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 011569 29 QELLSNIALLETTVSK-------LEQEMVSLHFQLS 57 (483)
Q Consensus 29 ~eLl~eia~lE~eV~~-------LE~~v~~l~~~l~ 57 (483)
.||+.++.-.|+++.+ ||.|+.+|=.++-
T Consensus 3 eeL~~~l~~~e~~~~~k~~~v~eLe~YiD~LL~rVm 38 (48)
T PF09457_consen 3 EELISLLKKQEEENARKDSRVRELEDYIDNLLVRVM 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999 7777777655443
No 7
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=44.92 E-value=41 Score=31.86 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=17.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 011569 22 SCFSHEAQELLSNIALLETTVSKL 45 (483)
Q Consensus 22 ~~lp~~~~eLl~eia~lE~eV~~L 45 (483)
..-..+-.||-.|++-+|+||.-|
T Consensus 25 ~LsEeE~eeLr~EL~KvEeEI~TL 48 (162)
T PF04201_consen 25 GLSEEEREELRSELAKVEEEIQTL 48 (162)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334456678888888888887755
No 8
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=39.63 E-value=76 Score=24.05 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 28 AQELLSNIALLETTVSKLEQEMVSLHF 54 (483)
Q Consensus 28 ~~eLl~eia~lE~eV~~LE~~v~~l~~ 54 (483)
.++|-.+|..|+.|+..|++++..|.+
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456666667777777777776666653
No 9
>PRK01203 prefoldin subunit alpha; Provisional
Probab=38.28 E-value=54 Score=29.96 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 28 AQELLSNIALLETTVSKLEQEMVSLHFQL 56 (483)
Q Consensus 28 ~~eLl~eia~lE~eV~~LE~~v~~l~~~l 56 (483)
+.+|++|+.+++++|..|.+++..|+..+
T Consensus 2 ~~~~~~~~~~~~~q~e~l~~ql~~L~~a~ 30 (130)
T PRK01203 2 ARDVEAQLNYIESLISSVDSQIDSLNKTL 30 (130)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998654
No 10
>smart00338 BRLZ basic region leucin zipper.
Probab=36.38 E-value=88 Score=24.44 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 29 QELLSNIALLETTVSKLEQEMVSLHF 54 (483)
Q Consensus 29 ~eLl~eia~lE~eV~~LE~~v~~l~~ 54 (483)
.+|=.++..|+.|+..|..+|..|..
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~ 54 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRR 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 11
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=33.35 E-value=56 Score=30.46 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 28 AQELLSNIALLETTVSKLEQEMVSLHF 54 (483)
Q Consensus 28 ~~eLl~eia~lE~eV~~LE~~v~~l~~ 54 (483)
+.||..+|+.|+.|+..||.++..|+.
T Consensus 111 ~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 111 NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666666666653
No 12
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=32.88 E-value=68 Score=28.42 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 011569 22 SCFSHEAQELLSNI--------ALLETTVSKLEQEMVSLHFQL 56 (483)
Q Consensus 22 ~~lp~~~~eLl~ei--------a~lE~eV~~LE~~v~~l~~~l 56 (483)
..+|.+.++++.+. ..|+++|-.||+||..|.-++
T Consensus 64 ~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 64 EKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred HhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 44677777777654 578889999999988887544
No 13
>PF13107 DUF3964: Protein of unknown function (DUF3964)
Probab=31.15 E-value=22 Score=30.73 Aligned_cols=16 Identities=44% Similarity=0.931 Sum_probs=11.8
Q ss_pred cCCCCCCcchhHHHHHH
Q 011569 263 VNPVHLSSNEKLAFWIN 279 (483)
Q Consensus 263 Vd~~~Ls~~EkLAFWIN 279 (483)
|++..+ .+|++|||+|
T Consensus 89 v~Lp~i-~~~~~AFW~N 104 (109)
T PF13107_consen 89 VNLPEI-ENQQMAFWFN 104 (109)
T ss_pred eeCchh-hHHHHHHHhh
Confidence 555554 4688999998
No 14
>smart00338 BRLZ basic region leucin zipper.
Probab=30.29 E-value=1.5e+02 Score=23.09 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 34 NIALLETTVSKLEQEMVSLHFQLS 57 (483)
Q Consensus 34 eia~lE~eV~~LE~~v~~l~~~l~ 57 (483)
.|..||.+|..|+.+...|+.++-
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~ 50 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIE 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544443
No 15
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=28.91 E-value=1.3e+02 Score=30.00 Aligned_cols=36 Identities=31% Similarity=0.349 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 25 SHEAQELLSNIALLETTVSKLEQEMVSLHFQLSQER 60 (483)
Q Consensus 25 p~~~~eLl~eia~lE~eV~~LE~~v~~l~~~l~~E~ 60 (483)
-.+.++|++|+..|+.|+..||.+...+...+-+++
T Consensus 48 ~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~ 83 (251)
T PF11932_consen 48 DDEKQELLAEYRQLEREIENLEVYNEQLERQVASQE 83 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788899999999999888888888887776543
No 16
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=28.48 E-value=1.5e+02 Score=25.79 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011569 33 SNIALLETTVSKLEQEMVSLHFQLSQERNE 62 (483)
Q Consensus 33 ~eia~lE~eV~~LE~~v~~l~~~l~~E~~~ 62 (483)
+.-+.+|.++..+|+.|.+|=-.||+|.|.
T Consensus 8 ~~r~~ae~~~~~ie~ElEeLTasLFeEAN~ 37 (100)
T PF06428_consen 8 ERREEAEQEKEQIESELEELTASLFEEANK 37 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344559999999999999999999999764
No 17
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=26.08 E-value=1.7e+02 Score=24.39 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 25 SHEAQELLSNIALLETTVSKLEQEMVSLHFQLS 57 (483)
Q Consensus 25 p~~~~eLl~eia~lE~eV~~LE~~v~~l~~~l~ 57 (483)
=.+.++|-..+.--++||-+|=..|-+||..|-
T Consensus 4 i~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLi 36 (76)
T PF11544_consen 4 IKQNKELKKKLNDKQEEIDRLNILVGSLRGKLI 36 (76)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999884
No 18
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=25.90 E-value=3.6e+02 Score=22.07 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 25 SHEAQELLSNIALLETTVSKLEQEMVSLH 53 (483)
Q Consensus 25 p~~~~eLl~eia~lE~eV~~LE~~v~~l~ 53 (483)
-.+++.+|.-|+.|..||..|.++...|.
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 35788899999999999999999866555
No 19
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=24.30 E-value=1.2e+02 Score=26.20 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011569 28 AQELLSNIALLETTVSKLEQEMV 50 (483)
Q Consensus 28 ~~eLl~eia~lE~eV~~LE~~v~ 50 (483)
+.+||.+|+-|+.|+-.|++++.
T Consensus 73 vl~LLd~i~~Lr~el~~L~~~l~ 95 (101)
T PRK10265 73 ALTLLDEIAHLKQENRLLRQRLS 95 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999988888887543
No 20
>PRK11239 hypothetical protein; Provisional
Probab=24.07 E-value=85 Score=31.08 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011569 35 IALLETTVSKLEQEMVSLHFQL 56 (483)
Q Consensus 35 ia~lE~eV~~LE~~v~~l~~~l 56 (483)
++.||++|..||++|-.|+..+
T Consensus 185 ~~~Le~rv~~Le~eva~L~~~l 206 (215)
T PRK11239 185 DGDLQARVEALEIEVAELKQRL 206 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666666665544
No 21
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=23.50 E-value=1.5e+02 Score=24.73 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 27 EAQELLSNIALLETTVSKLEQEMVSLHFQLSQ 58 (483)
Q Consensus 27 ~~~eLl~eia~lE~eV~~LE~~v~~l~~~l~~ 58 (483)
+.++||+.=..||+++..||+||-++=-..++
T Consensus 3 ~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~ 34 (80)
T PF09340_consen 3 ELKELLQKKKKLEKDLAALEKQIYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888776654444
No 22
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=23.22 E-value=85 Score=34.76 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 29 QELLSNIALLETTVSKLEQEMVSLHFQL 56 (483)
Q Consensus 29 ~eLl~eia~lE~eV~~LE~~v~~l~~~l 56 (483)
.+|+.+|+.|+.||..||+|+..|..++
T Consensus 27 ~~~~qkie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 27 IDLLQKIEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 3566688888888888888888777665
No 23
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional
Probab=23.04 E-value=1e+02 Score=29.73 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011569 37 LLETTVSKLEQEMVSLHFQLSQERNER 63 (483)
Q Consensus 37 ~lE~eV~~LE~~v~~l~~~l~~E~~~~ 63 (483)
..++|+..||++-..+++-+|++|++-
T Consensus 6 e~~~e~~~le~ky~~~~~p~y~kR~~I 32 (185)
T PTZ00008 6 ECAKEQMNIQRQFDEKKKPLFEKRQEI 32 (185)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 467899999999999999999999753
No 24
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=22.98 E-value=1.1e+02 Score=26.64 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=36.8
Q ss_pred hhHHHHHHHhccCCcCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 2 VLHVSLENAIKKNTMKL---SSPSCFSHEAQELLSNIALLETTVSKLEQEMVSLH 53 (483)
Q Consensus 2 ~~h~aLerA~~r~~~~L---~~~~~lp~~~~eLl~eia~lE~eV~~LE~~v~~l~ 53 (483)
++|..|..-|...+|.. +..|.+|.++..- ...+.+|.-...|+.++..|=
T Consensus 40 ~Lh~~L~~~fp~eag~~~~~~~lP~lP~~~~~~-~~~~~~e~R~~~L~~Yl~~Ll 93 (112)
T cd06890 40 KLHIALLDLFPAEAGRNSSKRILPYLPGPVTDV-VNDSISLKRLNDLNEYLNELI 93 (112)
T ss_pred HHHHHHHHhCcHhhCCCCCCCcCCCCCCCccCc-chhHHHHHHHHHHHHHHHHHH
Confidence 58999999998776652 3346666666443 566778888888888887774
No 25
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=21.92 E-value=2.3e+02 Score=21.47 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 35 IALLETTVSKLEQEMVSLHFQLSQERN 61 (483)
Q Consensus 35 ia~lE~eV~~LE~~v~~l~~~l~~E~~ 61 (483)
|+.|...|.-||.||..|+..+.+-++
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999877766554
No 26
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=21.90 E-value=1.9e+02 Score=30.66 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhh
Q 011569 23 CFSHEAQELLSNIALLE-----------TTVSKLEQEMVSLHFQLSQERNER 63 (483)
Q Consensus 23 ~lp~~~~eLl~eia~lE-----------~eV~~LE~~v~~l~~~l~~E~~~~ 63 (483)
.||+..+.=+..|..|. .||..||++-..+|+-||++|++-
T Consensus 34 ~Lp~~~~~rv~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eI 85 (337)
T PTZ00007 34 HLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEA 85 (337)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 67887776665554433 346677777777888999998753
No 27
>KOG3749 consensus Phosphoenolpyruvate carboxykinase [Energy production and conversion]
Probab=21.64 E-value=37 Score=37.41 Aligned_cols=31 Identities=29% Similarity=0.516 Sum_probs=25.0
Q ss_pred eEEechhhh--hhhcCc---------CCchHHHHHHHhcCCH
Q 011569 410 KLLVPKMLH--CFCKGS---------VDDANLAVWISHYLPP 440 (483)
Q Consensus 410 kv~LpKi~~--wY~~DF---------~~~~~Ll~~I~~~Lp~ 440 (483)
+-.+||||+ ||++|- |++.-+++||++.+..
T Consensus 523 ~~~~PkIFhvNwfrk~~~gKfLWPGfgeN~RVlewI~rR~~g 564 (640)
T KOG3749|consen 523 KAKLPKIFHVNWFRKDKEGKFLWPGFGENARVLEWIFRRVAG 564 (640)
T ss_pred CCCCCcEEEeeeeeeccCCCccCCCCcchhHHHHHHHHHhcc
Confidence 467999986 899884 4567899999988876
No 28
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=21.35 E-value=1.2e+02 Score=22.81 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=6.3
Q ss_pred HHHHHHHHH--------HHHHHHHHHHHHHH
Q 011569 26 HEAQELLSN--------IALLETTVSKLEQE 48 (483)
Q Consensus 26 ~~~~eLl~e--------ia~lE~eV~~LE~~ 48 (483)
..|+|||.| |.-++++|..||++
T Consensus 4 ~EAkelLqe~~d~IEqkiedid~qIaeLe~K 34 (46)
T PF08946_consen 4 AEAKELLQEHYDNIEQKIEDIDEQIAELEAK 34 (46)
T ss_dssp -----------THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHhHHHHHHHHHHHHHH
Confidence 356777766 34444444444444
No 29
>PTZ00264 circumsporozoite-related antigen; Provisional
Probab=20.93 E-value=1.5e+02 Score=27.02 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 27 EAQELLSNIALLETTVSKLEQEMVSLH 53 (483)
Q Consensus 27 ~~~eLl~eia~lE~eV~~LE~~v~~l~ 53 (483)
.++|||.|+.-=|||++++-+.-..++
T Consensus 47 dv~elisdmvrkeeelv~~tk~k~~~~ 73 (148)
T PTZ00264 47 DVHELISEMVRKEEELVNVTKKKSKYK 73 (148)
T ss_pred eHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 589999999999999999988776665
No 30
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=20.49 E-value=2.3e+02 Score=28.10 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011569 26 HEAQELLSNIALLETTVSKLEQEMVSLHFQLSQERNE 62 (483)
Q Consensus 26 ~~~~eLl~eia~lE~eV~~LE~~v~~l~~~l~~E~~~ 62 (483)
.+.+.....+..||..|.-||.-+..++|.|.|-|.+
T Consensus 191 e~~~~~~~~Le~LE~~Ie~lE~glE~vFR~LIktRVS 227 (231)
T PF03087_consen 191 EEVQNAQKRLEELEECIEELEEGLECVFRRLIKTRVS 227 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888889999999999999999999999988863
No 31
>PRK05097 Ter macrodomain organizer matS-binding protein; Provisional
Probab=20.44 E-value=1.3e+02 Score=27.82 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=26.5
Q ss_pred chHHHHHHHhcCCHHHHHHHHHHHHhhhhc
Q 011569 427 DANLAVWISHYLPPLQAAFVEQCISQRRQS 456 (483)
Q Consensus 427 ~~~Ll~~I~~~Lp~~~~~~i~~~l~~~~~~ 456 (483)
+..+++||.+++.+++...+.+.+++++.|
T Consensus 51 P~~v~~WI~~hm~p~l~nklkQaIRArRKR 80 (150)
T PRK05097 51 PVKVLEWIDKHMNPELVNRMKQTIRARRKR 80 (150)
T ss_pred cHHHHHHHHHhcCHHHHHHHHHHHHHHHHc
Confidence 568999999999999999999999887655
No 32
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.29 E-value=1.7e+02 Score=26.64 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 28 AQELLSNIALLETTVSKLEQEMVSLH 53 (483)
Q Consensus 28 ~~eLl~eia~lE~eV~~LE~~v~~l~ 53 (483)
..|||.-=+.||+...+||++|-.|-
T Consensus 19 L~elikkrqe~eetl~nLe~qIY~~E 44 (135)
T KOG3856|consen 19 LAELIKKRQELEETLANLERQIYAFE 44 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555555555554443
No 33
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=20.15 E-value=2.4e+02 Score=22.23 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 29 QELLSNIALLETTVSKLEQEMVSLHFQL 56 (483)
Q Consensus 29 ~eLl~eia~lE~eV~~LE~~v~~l~~~l 56 (483)
..+-+||+.|+.++..++++...|...+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei 47 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEI 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554444
Done!