Query 011569
Match_columns 483
No_of_seqs 254 out of 527
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 10:52:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011569.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011569hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ra3_B P2F; coiled coil domain 78.9 1.6 5.6E-05 27.5 2.8 21 27-47 8-28 (28)
2 1kd8_A GABH AIV, GCN4 acid bas 73.4 5.5 0.00019 27.3 4.4 27 24-50 6-32 (36)
3 3m48_A General control protein 69.6 4.7 0.00016 27.2 3.4 24 24-47 5-28 (33)
4 2wq1_A General control protein 69.4 4.8 0.00017 27.1 3.4 24 24-47 5-28 (33)
5 3he5_A Synzip1; heterodimeric 65.3 12 0.00043 26.3 5.0 20 35-54 5-24 (49)
6 1uo4_A General control protein 62.8 7.7 0.00026 26.3 3.4 24 24-47 6-29 (34)
7 4dzn_A Coiled-coil peptide CC- 62.0 15 0.00051 24.0 4.5 26 30-55 6-31 (33)
8 3ra3_A P1C; coiled coil domain 59.7 4.4 0.00015 25.6 1.6 24 34-57 1-24 (28)
9 1g6u_A Domain swapped dimer; d 58.9 13 0.00044 26.2 4.1 24 33-56 20-43 (48)
10 3c3f_A Alpha/beta peptide with 58.0 10 0.00036 25.6 3.4 24 24-47 6-29 (34)
11 1ci6_A Transcription factor AT 54.9 24 0.00084 26.8 5.6 29 26-54 30-58 (63)
12 4dzn_A Coiled-coil peptide CC- 54.6 18 0.00061 23.6 4.0 25 33-57 2-26 (33)
13 1t2k_D Cyclic-AMP-dependent tr 53.8 23 0.00078 26.6 5.3 30 27-56 30-59 (61)
14 1kd8_B GABH BLL, GCN4 acid bas 53.6 19 0.00063 24.7 4.1 27 24-50 6-32 (36)
15 2xus_A Breast cancer metastasi 53.0 14 0.00046 27.2 3.6 22 41-62 14-35 (49)
16 2oxj_A Hybrid alpha/beta pepti 49.3 18 0.0006 24.5 3.4 24 24-47 6-29 (34)
17 3c3g_A Alpha/beta peptide with 48.8 18 0.00062 24.3 3.4 24 24-47 5-28 (33)
18 2l5g_B Putative uncharacterize 48.4 30 0.001 24.5 4.6 28 29-56 5-32 (42)
19 1uii_A Geminin; human, DNA rep 48.0 36 0.0012 27.6 5.7 27 27-53 47-73 (83)
20 2e50_A Protein SET; histone ch 45.9 32 0.0011 32.7 6.1 41 22-62 22-73 (225)
21 2r2v_A GCN4 leucine zipper; co 44.7 23 0.00078 24.0 3.4 24 24-47 6-29 (34)
22 2aze_B Transcription factor E2 44.6 28 0.00095 29.4 4.9 37 22-58 2-38 (106)
23 3fs3_A Nucleosome assembly pro 43.5 41 0.0014 34.3 6.7 41 22-62 45-96 (359)
24 2yy0_A C-MYC-binding protein; 40.3 57 0.002 24.1 5.4 33 24-56 17-49 (53)
25 1nkp_B MAX protein, MYC proto- 39.9 46 0.0016 26.3 5.3 29 28-56 49-77 (83)
26 1zme_C Proline utilization tra 39.5 26 0.00089 26.2 3.6 21 35-55 46-66 (70)
27 3he4_A Synzip6; heterodimeric 38.6 30 0.001 25.0 3.4 19 36-54 34-52 (56)
28 2bni_A General control protein 37.0 35 0.0012 23.1 3.4 24 24-47 6-29 (34)
29 2wvr_A Geminin; DNA replicatio 36.4 53 0.0018 30.8 5.7 37 4-54 107-143 (209)
30 2hy6_A General control protein 36.3 51 0.0018 22.3 4.1 25 24-48 6-30 (34)
31 2lw9_A Unconventionnal myosin- 35.5 26 0.00089 25.6 2.7 17 40-56 6-22 (51)
32 3kyp_A Pfnaps, nucleosome asse 33.9 66 0.0023 29.7 6.1 36 27-62 4-43 (193)
33 1hjb_A Ccaat/enhancer binding 33.4 54 0.0018 26.7 4.7 31 27-57 44-74 (87)
34 2dgc_A Protein (GCN4); basic d 33.2 52 0.0018 25.0 4.3 31 27-57 31-61 (63)
35 2wuj_A Septum site-determining 32.9 23 0.00078 26.5 2.2 20 34-53 35-54 (57)
36 1jnm_A Proto-oncogene C-JUN; B 32.7 30 0.001 26.0 2.9 25 29-53 25-49 (62)
37 1wlq_A Geminin; coiled-coil; 2 32.7 52 0.0018 26.7 4.4 28 27-54 39-66 (83)
38 4dac_A Computationally designe 32.3 44 0.0015 21.1 3.0 22 29-50 4-25 (28)
39 1ci6_A Transcription factor AT 31.3 84 0.0029 23.7 5.3 31 27-57 24-54 (63)
40 3viq_B Mating-type switching p 29.5 41 0.0014 27.4 3.4 29 29-57 4-32 (85)
41 2zd7_A VPS75, vacuolar protein 28.7 88 0.003 30.3 6.2 36 27-62 10-49 (264)
42 2pnv_A Small conductance calci 28.4 1.1E+02 0.0037 21.7 5.0 27 30-56 9-39 (43)
43 2wt7_A Proto-oncogene protein 27.7 1.2E+02 0.0042 22.7 5.6 28 28-55 25-52 (63)
44 1zme_C Proline utilization tra 26.5 56 0.0019 24.3 3.5 23 27-49 45-67 (70)
45 2wt7_A Proto-oncogene protein 25.9 1.2E+02 0.0041 22.8 5.3 28 27-54 31-58 (63)
46 1gu4_A CAAT/enhancer binding p 25.8 46 0.0016 26.6 3.0 27 27-53 44-70 (78)
47 1t2k_D Cyclic-AMP-dependent tr 25.4 1.4E+02 0.0046 22.2 5.5 29 28-56 24-52 (61)
48 3he5_A Synzip1; heterodimeric 25.2 1.1E+02 0.0039 21.5 4.5 28 29-56 6-47 (49)
49 4etp_A Kinesin-like protein KA 25.1 1.1E+02 0.0037 31.4 6.4 38 27-64 11-48 (403)
50 2ve7_A Kinetochore protein HEC 24.4 1.1E+02 0.0039 30.2 6.3 30 25-54 184-213 (315)
51 1jnm_A Proto-oncogene C-JUN; B 23.7 1.3E+02 0.0045 22.4 5.1 30 27-56 30-59 (62)
52 2er8_A Regulatory protein Leu3 23.5 36 0.0012 25.7 1.9 21 33-53 49-69 (72)
53 1lq7_A Alpha3W; three helix bu 23.4 40 0.0014 25.2 2.0 18 34-51 49-66 (67)
54 1a93_B MAX protein, coiled coi 23.4 1E+02 0.0035 20.9 3.8 27 26-52 7-33 (34)
55 2wuj_A Septum site-determining 23.3 59 0.002 24.1 3.0 23 27-49 35-57 (57)
56 1dh3_A Transcription factor CR 22.8 1.3E+02 0.0044 22.2 4.7 26 28-53 24-49 (55)
57 2zvf_A Alanyl-tRNA synthetase; 22.5 78 0.0027 27.8 4.2 41 11-51 16-57 (171)
58 2ayu_A Nucleosome assembly pro 22.1 1.1E+02 0.0037 31.8 5.8 41 23-63 87-138 (417)
59 2lw1_A ABC transporter ATP-bin 21.8 92 0.0031 24.9 4.1 24 33-56 22-45 (89)
60 2zqm_A Prefoldin beta subunit 21.4 1.5E+02 0.0052 24.2 5.6 30 29-58 80-109 (117)
61 2k48_A Nucleoprotein; viral pr 21.3 1.2E+02 0.0043 25.5 4.8 29 31-59 33-61 (107)
62 1t3j_A Mitofusin 1; coiled coi 21.2 1.1E+02 0.0038 25.4 4.5 26 28-53 49-74 (96)
63 1joc_A EEA1, early endosomal a 20.9 1.1E+02 0.0039 26.0 4.8 32 27-58 5-36 (125)
64 4dzo_A Mitotic spindle assembl 20.7 1.3E+02 0.0043 25.9 5.0 28 33-61 4-31 (123)
65 3ph0_C ASCG; type III secretio 20.6 1.2E+02 0.0042 23.0 4.1 13 26-38 3-15 (61)
66 2z5i_A TM, general control pro 20.4 1.5E+02 0.005 21.7 4.6 23 39-61 11-33 (52)
67 4g1a_A AQ-C16C19 peptide; heli 20.1 37 0.0013 22.0 1.1 18 35-52 2-19 (32)
68 3he4_A Synzip6; heterodimeric 20.1 2E+02 0.0067 20.7 5.0 22 35-56 26-47 (56)
No 1
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=78.87 E-value=1.6 Score=27.54 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011569 27 EAQELLSNIALLETTVSKLEQ 47 (483)
Q Consensus 27 ~~~eLl~eia~lE~eV~~LE~ 47 (483)
+.-.|-.|||.||-||.-|||
T Consensus 8 knarlkqeiaaleyeiaaleq 28 (28)
T 3ra3_B 8 KNARLKQEIAALEYEIAALEQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHHHhcC
Confidence 445688999999999999986
No 2
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=73.38 E-value=5.5 Score=27.30 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 24 FSHEAQELLSNIALLETTVSKLEQEMV 50 (483)
Q Consensus 24 lp~~~~eLl~eia~lE~eV~~LE~~v~ 50 (483)
|-.++.|||.|-..||.||.+|.+-+-
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 346788999999999999999887553
No 3
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=69.60 E-value=4.7 Score=27.17 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 011569 24 FSHEAQELLSNIALLETTVSKLEQ 47 (483)
Q Consensus 24 lp~~~~eLl~eia~lE~eV~~LE~ 47 (483)
|-.++.|||.|-..||.||.+|-.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 446889999999999999999854
No 4
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=69.38 E-value=4.8 Score=27.06 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 011569 24 FSHEAQELLSNIALLETTVSKLEQ 47 (483)
Q Consensus 24 lp~~~~eLl~eia~lE~eV~~LE~ 47 (483)
|-.++.|||.+...||.||.+|-+
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 346889999999999999999854
No 5
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=65.27 E-value=12 Score=26.35 Aligned_cols=20 Identities=40% Similarity=0.453 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011569 35 IALLETTVSKLEQEMVSLHF 54 (483)
Q Consensus 35 ia~lE~eV~~LE~~v~~l~~ 54 (483)
+|.||.||..||.+-..|+.
T Consensus 5 vaqlenevaslenenetlkk 24 (49)
T 3he5_A 5 VAQLENEVASLENENETLKK 24 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHH
Confidence 34455555555555444443
No 6
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=62.77 E-value=7.7 Score=26.30 Aligned_cols=24 Identities=17% Similarity=0.487 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 011569 24 FSHEAQELLSNIALLETTVSKLEQ 47 (483)
Q Consensus 24 lp~~~~eLl~eia~lE~eV~~LE~ 47 (483)
|-.++.|||.+-..||.||.+|-+
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 446889999999999999999854
No 7
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=62.01 E-value=15 Score=23.99 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 30 ELLSNIALLETTVSKLEQEMVSLHFQ 55 (483)
Q Consensus 30 eLl~eia~lE~eV~~LE~~v~~l~~~ 55 (483)
.|-.|||.|..||.-|.-++-.|+|+
T Consensus 6 alkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34455555555555555555555544
No 8
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=59.71 E-value=4.4 Score=25.62 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 34 NIALLETTVSKLEQEMVSLHFQLS 57 (483)
Q Consensus 34 eia~lE~eV~~LE~~v~~l~~~l~ 57 (483)
||..||.|---|||++-.|++++-
T Consensus 1 eidalefendaleqkiaalkqkia 24 (28)
T 3ra3_A 1 EIDALEFENDALEQKIAALKQKIA 24 (28)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHhccHHHHHHHHHHHHHHH
Confidence 456788888889999988888764
No 9
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=58.90 E-value=13 Score=26.16 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 33 SNIALLETTVSKLEQEMVSLHFQL 56 (483)
Q Consensus 33 ~eia~lE~eV~~LE~~v~~l~~~l 56 (483)
.|+|.||.|..-||+++-.|+.+|
T Consensus 20 eelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999998765
No 10
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=58.01 E-value=10 Score=25.57 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 011569 24 FSHEAQELLSNIALLETTVSKLEQ 47 (483)
Q Consensus 24 lp~~~~eLl~eia~lE~eV~~LE~ 47 (483)
|-.++.|||.|-..||.||.+|-.
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 346789999999999999999854
No 11
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=54.93 E-value=24 Score=26.81 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 26 HEAQELLSNIALLETTVSKLEQEMVSLHF 54 (483)
Q Consensus 26 ~~~~eLl~eia~lE~eV~~LE~~v~~l~~ 54 (483)
.++++|-.+.+.|+.+|..|+.++..|+.
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666654
No 12
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=54.65 E-value=18 Score=23.63 Aligned_cols=25 Identities=28% Similarity=0.622 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 33 SNIALLETTVSKLEQEMVSLHFQLS 57 (483)
Q Consensus 33 ~eia~lE~eV~~LE~~v~~l~~~l~ 57 (483)
.|||.|..||.-|.+++-.|+..+-
T Consensus 2 geiaalkqeiaalkkeiaalkfeia 26 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIA 26 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888888888888887653
No 13
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=53.84 E-value=23 Score=26.59 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 27 EAQELLSNIALLETTVSKLEQEMVSLHFQL 56 (483)
Q Consensus 27 ~~~eLl~eia~lE~eV~~LE~~v~~l~~~l 56 (483)
++.+|-.|-..|..+|..|++++..|++.|
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555443
No 14
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=53.59 E-value=19 Score=24.70 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 24 FSHEAQELLSNIALLETTVSKLEQEMV 50 (483)
Q Consensus 24 lp~~~~eLl~eia~lE~eV~~LE~~v~ 50 (483)
|-.++.|||.+-..||.||.+|-+-+-
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 346789999999999999999866543
No 15
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=53.00 E-value=14 Score=27.23 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 011569 41 TVSKLEQEMVSLHFQLSQERNE 62 (483)
Q Consensus 41 eV~~LE~~v~~l~~~l~~E~~~ 62 (483)
+.+.||+|-..|+-++|+||-.
T Consensus 14 ~l~~LEkqF~~LkEqlY~ERl~ 35 (49)
T 2xus_A 14 EMLDLEKQFSELKEKLFRERLS 35 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566779999999999999853
No 16
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=49.29 E-value=18 Score=24.52 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 011569 24 FSHEAQELLSNIALLETTVSKLEQ 47 (483)
Q Consensus 24 lp~~~~eLl~eia~lE~eV~~LE~ 47 (483)
|-.++.|||+|=..||.||.+|-.
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 346789999999999999999854
No 17
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=48.83 E-value=18 Score=24.29 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 011569 24 FSHEAQELLSNIALLETTVSKLEQ 47 (483)
Q Consensus 24 lp~~~~eLl~eia~lE~eV~~LE~ 47 (483)
|-.++.|||.+=..||.||.+|-.
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 346789999999999999999854
No 18
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=48.41 E-value=30 Score=24.54 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 29 QELLSNIALLETTVSKLEQEMVSLHFQL 56 (483)
Q Consensus 29 ~eLl~eia~lE~eV~~LE~~v~~l~~~l 56 (483)
.|||.-|.-+.-||.+-|+++..|+-++
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999888655
No 19
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=48.00 E-value=36 Score=27.59 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 27 EAQELLSNIALLETTVSKLEQEMVSLH 53 (483)
Q Consensus 27 ~~~eLl~eia~lE~eV~~LE~~v~~l~ 53 (483)
..++|-.+|..|++||..|.+....|+
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888889999988888887776
No 20
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=45.90 E-value=32 Score=32.70 Aligned_cols=41 Identities=27% Similarity=0.326 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHh
Q 011569 22 SCFSHEAQELLSNIALLE-----------TTVSKLEQEMVSLHFQLSQERNE 62 (483)
Q Consensus 22 ~~lp~~~~eLl~eia~lE-----------~eV~~LE~~v~~l~~~l~~E~~~ 62 (483)
..+|...++.|.+|..+. +||..||++-..+|+-||++|++
T Consensus 22 ~~~~~~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~e 73 (225)
T 2e50_A 22 ETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSE 73 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence 445666666666555443 46667777777888889999864
No 21
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=44.74 E-value=23 Score=24.01 Aligned_cols=24 Identities=8% Similarity=0.217 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 011569 24 FSHEAQELLSNIALLETTVSKLEQ 47 (483)
Q Consensus 24 lp~~~~eLl~eia~lE~eV~~LE~ 47 (483)
|-.++.|||.+-.-||.||.+|-+
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 446889999999999999999854
No 22
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=44.64 E-value=28 Score=29.36 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 22 SCFSHEAQELLSNIALLETTVSKLEQEMVSLHFQLSQ 58 (483)
Q Consensus 22 ~~lp~~~~eLl~eia~lE~eV~~LE~~v~~l~~~l~~ 58 (483)
+.+..+...|-+||+.|+.+=..|.+++..++++|-.
T Consensus 2 ~~~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~ 38 (106)
T 2aze_B 2 SHMGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRL 38 (106)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788999999999999999999999999988864
No 23
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=43.51 E-value=41 Score=34.34 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHh
Q 011569 22 SCFSHEAQELLSNIALLET-----------TVSKLEQEMVSLHFQLSQERNE 62 (483)
Q Consensus 22 ~~lp~~~~eLl~eia~lE~-----------eV~~LE~~v~~l~~~l~~E~~~ 62 (483)
..||+.+++=|..+..|+. ||..||++-..+|+-||++|.+
T Consensus 45 ~sLp~~v~~rI~aLk~lQ~E~~~le~ef~eEv~~LE~KY~kl~qPLyeKR~e 96 (359)
T 3fs3_A 45 TDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRRE 96 (359)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 6799988855555544443 5566777777788889988864
No 24
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=40.28 E-value=57 Score=24.05 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 24 FSHEAQELLSNIALLETTVSKLEQEMVSLHFQL 56 (483)
Q Consensus 24 lp~~~~eLl~eia~lE~eV~~LE~~v~~l~~~l 56 (483)
-+..+..|..|++-|-.+|..|.+++..|+.+|
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999999998776
No 25
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=39.86 E-value=46 Score=26.30 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 28 AQELLSNIALLETTVSKLEQEMVSLHFQL 56 (483)
Q Consensus 28 ~~eLl~eia~lE~eV~~LE~~v~~l~~~l 56 (483)
++.|-.++..|+.|+..|.++...|..+|
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777777777777777766655
No 26
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=39.55 E-value=26 Score=26.21 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011569 35 IALLETTVSKLEQEMVSLHFQ 55 (483)
Q Consensus 35 ia~lE~eV~~LE~~v~~l~~~ 55 (483)
|..||.+|..||++|..|+..
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666543
No 27
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=38.64 E-value=30 Score=25.05 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011569 36 ALLETTVSKLEQEMVSLHF 54 (483)
Q Consensus 36 a~lE~eV~~LE~~v~~l~~ 54 (483)
|-||..|.+||+.+-+|-+
T Consensus 34 anlekdianlekdianler 52 (56)
T 3he4_A 34 ANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 28
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=37.00 E-value=35 Score=23.07 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 011569 24 FSHEAQELLSNIALLETTVSKLEQ 47 (483)
Q Consensus 24 lp~~~~eLl~eia~lE~eV~~LE~ 47 (483)
|-.++.|||.+=..||.||.+|-+
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 446789999999999999999854
No 29
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=36.42 E-value=53 Score=30.85 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=29.7
Q ss_pred HHHHHHHhccCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 4 HVSLENAIKKNTMKLSSPSCFSHEAQELLSNIALLETTVSKLEQEMVSLHF 54 (483)
Q Consensus 4 h~aLerA~~r~~~~L~~~~~lp~~~~eLl~eia~lE~eV~~LE~~v~~l~~ 54 (483)
|.||+.||. ..++|-.+|..|++||..|.+....|+-
T Consensus 107 R~AL~eaLe--------------EN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 107 RKALYEALK--------------ENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777665 4578889999999999999998888874
No 30
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=36.27 E-value=51 Score=22.26 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 24 FSHEAQELLSNIALLETTVSKLEQE 48 (483)
Q Consensus 24 lp~~~~eLl~eia~lE~eV~~LE~~ 48 (483)
|-.++.|||.+=..||.||.+|-+-
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4567899999999999999998653
No 31
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=35.53 E-value=26 Score=25.64 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011569 40 TTVSKLEQEMVSLHFQL 56 (483)
Q Consensus 40 ~eV~~LE~~v~~l~~~l 56 (483)
|||.+||+.+..|+++-
T Consensus 6 EEILRLErEIE~Lqrqk 22 (51)
T 2lw9_A 6 EEILRLEKEIEDLQRMK 22 (51)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57788888888877653
No 32
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=33.90 E-value=66 Score=29.67 Aligned_cols=36 Identities=14% Similarity=0.270 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Q 011569 27 EAQELLSNIALLET----TVSKLEQEMVSLHFQLSQERNE 62 (483)
Q Consensus 27 ~~~eLl~eia~lE~----eV~~LE~~v~~l~~~l~~E~~~ 62 (483)
..++|=.|+..||+ |+..||++-..+|+-+|++|++
T Consensus 4 ~L~~iQ~e~~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~ 43 (193)
T 3kyp_A 4 DFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDE 43 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 45667777777775 5899999999999999999975
No 33
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=33.40 E-value=54 Score=26.73 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 27 EAQELLSNIALLETTVSKLEQEMVSLHFQLS 57 (483)
Q Consensus 27 ~~~eLl~eia~lE~eV~~LE~~v~~l~~~l~ 57 (483)
.+.+|-+|=+.|+.+|..|++++..|+.-|.
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666664443
No 34
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=33.15 E-value=52 Score=25.05 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 27 EAQELLSNIALLETTVSKLEQEMVSLHFQLS 57 (483)
Q Consensus 27 ~~~eLl~eia~lE~eV~~LE~~v~~l~~~l~ 57 (483)
.+.+|=.+++.|+.|-..|+.+|..|+..+.
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777888888888888888888876553
No 35
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=32.93 E-value=23 Score=26.47 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 011569 34 NIALLETTVSKLEQEMVSLH 53 (483)
Q Consensus 34 eia~lE~eV~~LE~~v~~l~ 53 (483)
+++.|..|+..|++++..|.
T Consensus 35 ~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 35 DYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555544443
No 36
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=32.73 E-value=30 Score=26.02 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 29 QELLSNIALLETTVSKLEQEMVSLH 53 (483)
Q Consensus 29 ~eLl~eia~lE~eV~~LE~~v~~l~ 53 (483)
.+|-.++..||.+-..|..+|..|+
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 37
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=32.69 E-value=52 Score=26.66 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 27 EAQELLSNIALLETTVSKLEQEMVSLHF 54 (483)
Q Consensus 27 ~~~eLl~eia~lE~eV~~LE~~v~~l~~ 54 (483)
....|-.+|..+++||..|.+....|+-
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888888877763
No 38
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=32.28 E-value=44 Score=21.08 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011569 29 QELLSNIALLETTVSKLEQEMV 50 (483)
Q Consensus 29 ~eLl~eia~lE~eV~~LE~~v~ 50 (483)
-.|=|++.-||.||-+||-+|-
T Consensus 4 ykldanvkrlekevgklegeva 25 (28)
T 4dac_A 4 YKLDANVKRLEKEVGKLEGEVA 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred eeccccHHHHHHHHhhhhhhhh
Confidence 3456677777777777776653
No 39
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=31.32 E-value=84 Score=23.74 Aligned_cols=31 Identities=23% Similarity=0.224 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 27 EAQELLSNIALLETTVSKLEQEMVSLHFQLS 57 (483)
Q Consensus 27 ~~~eLl~eia~lE~eV~~LE~~v~~l~~~l~ 57 (483)
.+.+|-.++..||.+...|+.+|..|...+-
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777777776543
No 40
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=29.55 E-value=41 Score=27.38 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 29 QELLSNIALLETTVSKLEQEMVSLHFQLS 57 (483)
Q Consensus 29 ~eLl~eia~lE~eV~~LE~~v~~l~~~l~ 57 (483)
..|-++|+.|++++..||+++..+.-+|.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788999999999999999988876543
No 41
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=28.70 E-value=88 Score=30.31 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Q 011569 27 EAQELLSNIALLETTVSK----LEQEMVSLHFQLSQERNE 62 (483)
Q Consensus 27 ~~~eLl~eia~lE~eV~~----LE~~v~~l~~~l~~E~~~ 62 (483)
..++++.+++.||.|+.+ ||++-..+|+-||++|++
T Consensus 10 ~l~~~~~~l~~lq~e~~~~~~ele~ky~~~~~Ply~kR~e 49 (264)
T 2zd7_A 10 EHAKAFLGLAKCEEEVDAIEREVELYRLNKMKPVYEKRDA 49 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456777788777766554 777777888888999874
No 42
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=28.44 E-value=1.1e+02 Score=21.75 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=22.4
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 011569 30 ELLSNI----ALLETTVSKLEQEMVSLHFQL 56 (483)
Q Consensus 30 eLl~ei----a~lE~eV~~LE~~v~~l~~~l 56 (483)
||+.|+ ..||+-|..||.++.+|...+
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 556655 579999999999999999765
No 43
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=27.72 E-value=1.2e+02 Score=22.73 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 28 AQELLSNIALLETTVSKLEQEMVSLHFQ 55 (483)
Q Consensus 28 ~~eLl~eia~lE~eV~~LE~~v~~l~~~ 55 (483)
+.+|-.++..||.+-..|..+|..|+..
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554443
No 44
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=26.52 E-value=56 Score=24.27 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011569 27 EAQELLSNIALLETTVSKLEQEM 49 (483)
Q Consensus 27 ~~~eLl~eia~lE~eV~~LE~~v 49 (483)
.+.+|-.+|+.||.+|..|+..+
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999875
No 45
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=25.93 E-value=1.2e+02 Score=22.78 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 27 EAQELLSNIALLETTVSKLEQEMVSLHF 54 (483)
Q Consensus 27 ~~~eLl~eia~lE~eV~~LE~~v~~l~~ 54 (483)
++..|-.|-+.|..+|..|++++..|+.
T Consensus 31 ~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 31 ETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555544
No 46
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=25.82 E-value=46 Score=26.57 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 27 EAQELLSNIALLETTVSKLEQEMVSLH 53 (483)
Q Consensus 27 ~~~eLl~eia~lE~eV~~LE~~v~~l~ 53 (483)
.+.+|-+|=+.|+.+|..|++++..|+
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666665
No 47
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.43 E-value=1.4e+02 Score=22.20 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 28 AQELLSNIALLETTVSKLEQEMVSLHFQL 56 (483)
Q Consensus 28 ~~eLl~eia~lE~eV~~LE~~v~~l~~~l 56 (483)
+.+|=.++..||.+-..|+.+|..|+..+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666665544
No 48
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=25.19 E-value=1.1e+02 Score=21.46 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
Q 011569 29 QELLSNIALLETT--------------VSKLEQEMVSLHFQL 56 (483)
Q Consensus 29 ~eLl~eia~lE~e--------------V~~LE~~v~~l~~~l 56 (483)
-.|-.|+|.||.| |.+||+++-+||.++
T Consensus 6 aqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 6 AQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 4566799999987 566666666666543
No 49
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.09 E-value=1.1e+02 Score=31.41 Aligned_cols=38 Identities=29% Similarity=0.309 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011569 27 EAQELLSNIALLETTVSKLEQEMVSLHFQLSQERNERR 64 (483)
Q Consensus 27 ~~~eLl~eia~lE~eV~~LE~~v~~l~~~l~~E~~~~~ 64 (483)
+..+|-.+++.||++|..+|+++..+..++.+|...|+
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr 48 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRR 48 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777777655543
No 50
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=24.38 E-value=1.1e+02 Score=30.17 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 25 SHEAQELLSNIALLETTVSKLEQEMVSLHF 54 (483)
Q Consensus 25 p~~~~eLl~eia~lE~eV~~LE~~v~~l~~ 54 (483)
=.+..+|.+|++.|++|+..||+.+.++..
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456777778888888888888777766654
No 51
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=23.74 E-value=1.3e+02 Score=22.38 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 27 EAQELLSNIALLETTVSKLEQEMVSLHFQL 56 (483)
Q Consensus 27 ~~~eLl~eia~lE~eV~~LE~~v~~l~~~l 56 (483)
.+.+|-+|-+.|..+|..|++++..|++.|
T Consensus 30 ~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 30 KVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555554433
No 52
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=23.53 E-value=36 Score=25.66 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011569 33 SNIALLETTVSKLEQEMVSLH 53 (483)
Q Consensus 33 ~eia~lE~eV~~LE~~v~~l~ 53 (483)
..|+.||.+|..||+.|..|.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 677888888888888887653
No 53
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=23.42 E-value=40 Score=25.19 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011569 34 NIALLETTVSKLEQEMVS 51 (483)
Q Consensus 34 eia~lE~eV~~LE~~v~~ 51 (483)
|+.-+|+||-+||+.+..
T Consensus 49 evkkveeevkkleeeikk 66 (67)
T 1lq7_A 49 EVKKVEEEVKKLEEEIKK 66 (67)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhc
Confidence 455689999999998754
No 54
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=23.39 E-value=1e+02 Score=20.90 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 26 HEAQELLSNIALLETTVSKLEQEMVSL 52 (483)
Q Consensus 26 ~~~~eLl~eia~lE~eV~~LE~~v~~l 52 (483)
.+..+.-++|.-|+..-..||+||-.|
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 356677788888888888888887554
No 55
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=23.28 E-value=59 Score=24.14 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011569 27 EAQELLSNIALLETTVSKLEQEM 49 (483)
Q Consensus 27 ~~~eLl~eia~lE~eV~~LE~~v 49 (483)
...+|..|++.|++++..||+++
T Consensus 35 ~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 35 DYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556667777777776666653
No 56
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=22.80 E-value=1.3e+02 Score=22.17 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 28 AQELLSNIALLETTVSKLEQEMVSLH 53 (483)
Q Consensus 28 ~~eLl~eia~lE~eV~~LE~~v~~l~ 53 (483)
+.+|=.+++.||.|-..|.+++..|.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 57
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=22.47 E-value=78 Score=27.84 Aligned_cols=41 Identities=7% Similarity=0.243 Sum_probs=22.7
Q ss_pred hccCCcCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 11 IKKNTMKLS-SPSCFSHEAQELLSNIALLETTVSKLEQEMVS 51 (483)
Q Consensus 11 ~~r~~~~L~-~~~~lp~~~~eLl~eia~lE~eV~~LE~~v~~ 51 (483)
+..-+..|+ .+.-+|..+..|+.|+..||.|+..|.+++..
T Consensus 16 l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 16 LREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp HHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334564 33566666666666666665555555555443
No 58
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=22.09 E-value=1.1e+02 Score=31.75 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=30.3
Q ss_pred CCCHHHHHHH-------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhh
Q 011569 23 CFSHEAQELL-------SNIALLET----TVSKLEQEMVSLHFQLSQERNER 63 (483)
Q Consensus 23 ~lp~~~~eLl-------~eia~lE~----eV~~LE~~v~~l~~~l~~E~~~~ 63 (483)
.||+.++.-| .|+..||+ ||..||++-..+|+-||+.|++-
T Consensus 87 sLp~~v~~rI~aLk~lQ~e~~~le~ef~~ev~eLE~Ky~~~~~PLy~KR~eI 138 (417)
T 2ayu_A 87 GLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRI 138 (417)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888886554 44455554 78888889999999999999753
No 59
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=21.78 E-value=92 Score=24.94 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 33 SNIALLETTVSKLEQEMVSLHFQL 56 (483)
Q Consensus 33 ~eia~lE~eV~~LE~~v~~l~~~l 56 (483)
.|+..||.+|..||.++..|...|
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666555544
No 60
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.44 E-value=1.5e+02 Score=24.19 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 29 QELLSNIALLETTVSKLEQEMVSLHFQLSQ 58 (483)
Q Consensus 29 ~eLl~eia~lE~eV~~LE~~v~~l~~~l~~ 58 (483)
..|=.+|+.||..+.++++++..++..|++
T Consensus 80 e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 80 ETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555566655555553
No 61
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.26 E-value=1.2e+02 Score=25.49 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 31 LLSNIALLETTVSKLEQEMVSLHFQLSQE 59 (483)
Q Consensus 31 Ll~eia~lE~eV~~LE~~v~~l~~~l~~E 59 (483)
-.++|.-||+|+...|+|++.=+++|-++
T Consensus 33 tM~~ieeLQ~Ei~~~E~QL~iArQKLkdA 61 (107)
T 2k48_A 33 TMSTLQELQENITAHEQQLVTARQKLKDA 61 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778889999999999999999999764
No 62
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=21.15 E-value=1.1e+02 Score=25.41 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 28 AQELLSNIALLETTVSKLEQEMVSLH 53 (483)
Q Consensus 28 ~~eLl~eia~lE~eV~~LE~~v~~l~ 53 (483)
..||=.||+-||.||..||.-....+
T Consensus 49 ~~eL~~EI~~L~~eI~~LE~iqs~aK 74 (96)
T 1t3j_A 49 QKHLEEEIARLSKEIDQLEKMQNNSK 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 46778888888888888887555443
No 63
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=20.94 E-value=1.1e+02 Score=26.02 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 27 EAQELLSNIALLETTVSKLEQEMVSLHFQLSQ 58 (483)
Q Consensus 27 ~~~eLl~eia~lE~eV~~LE~~v~~l~~~l~~ 58 (483)
.-..|+....-.|.||..|.+++..|++.|-.
T Consensus 5 e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~ 36 (125)
T 1joc_A 5 ERRALLERCLKGEGEIEKLQTKVLELQRKLDN 36 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34678889999999999999999999998854
No 64
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=20.67 E-value=1.3e+02 Score=25.91 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 33 SNIALLETTVSKLEQEMVSLHFQLSQERN 61 (483)
Q Consensus 33 ~eia~lE~eV~~LE~~v~~l~~~l~~E~~ 61 (483)
.||+.|+.+|..+|++...|+ ++|.++.
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLK-evF~~ks 31 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLK-EVFQTKI 31 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 589999999999999998887 5666553
No 65
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=20.59 E-value=1.2e+02 Score=22.97 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q 011569 26 HEAQELLSNIALL 38 (483)
Q Consensus 26 ~~~~eLl~eia~l 38 (483)
.+.+.||||||+.
T Consensus 3 ~~l~~lLAe~AL~ 15 (61)
T 3ph0_C 3 VQLKKQLAELALA 15 (61)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4678899999986
No 66
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=20.41 E-value=1.5e+02 Score=21.74 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011569 39 ETTVSKLEQEMVSLHFQLSQERN 61 (483)
Q Consensus 39 E~eV~~LE~~v~~l~~~l~~E~~ 61 (483)
|-.|.+||+.|..|--.|+.|+-
T Consensus 11 ERsV~KLek~ID~LEdeL~~eKe 33 (52)
T 2z5i_A 11 ENEVARLKKLVDDLEDELYAQKL 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 67788888888888888887753
No 67
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=20.12 E-value=37 Score=21.99 Aligned_cols=18 Identities=39% Similarity=0.501 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011569 35 IALLETTVSKLEQEMVSL 52 (483)
Q Consensus 35 ia~lE~eV~~LE~~v~~l 52 (483)
||.||..|.-|||+--..
T Consensus 2 iaaleqkiaaleqkcaac 19 (32)
T 4g1a_A 2 IAALEQKIAALEQKCAAC 19 (32)
T ss_dssp CHHHHHHHHHHHHHTSSH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 566666666666654433
No 68
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=20.10 E-value=2e+02 Score=20.74 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 011569 35 IALLETTVSKLEQEMVSLHFQL 56 (483)
Q Consensus 35 ia~lE~eV~~LE~~v~~l~~~l 56 (483)
+|-||..-.+||+.+-+|-.++
T Consensus 26 varlendnanlekdianlekdi 47 (56)
T 3he4_A 26 VARLENDNANLEKDIANLEKDI 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHH
Confidence 4444555555555555554443
Done!