Query 011569
Match_columns 483
No_of_seqs 254 out of 527
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 10:52:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011569.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011569hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2azeb1 e.63.1.2 (B:201-301) T 34.4 30 0.0022 26.9 5.5 32 27-58 2-33 (101)
2 d1wu9a1 a.245.1.1 (A:191-249) 27.3 44 0.0032 23.5 4.8 27 27-54 2-28 (59)
3 d1nlwa_ a.38.1.1 (A:) Mad prot 25.7 52 0.0038 23.7 5.3 29 28-56 49-77 (79)
4 d1hywa_ d.186.1.1 (A:) Head-to 19.8 23 0.0017 24.9 1.8 29 235-263 25-53 (58)
5 d2bz1a1 c.144.1.1 (A:1-174) GT 19.6 46 0.0033 27.9 4.3 46 360-405 26-85 (174)
6 d1nkpa_ a.38.1.1 (A:) Myc prot 18.1 1E+02 0.0074 22.5 5.6 24 32-55 51-74 (88)
7 d1seta1 a.2.7.1 (A:1-110) Sery 17.7 79 0.0057 24.0 5.0 36 25-60 63-98 (110)
8 d1fxkc_ a.2.5.1 (C:) Prefoldin 17.0 70 0.0051 25.0 4.6 31 27-57 2-32 (133)
9 d1v74b_ a.24.20.1 (B:) Colicin 16.5 34 0.0025 26.0 2.3 18 133-150 37-54 (87)
10 d2e50a1 d.305.1.1 (A:1-222) Pr 13.3 1.4E+02 0.01 25.7 6.1 41 22-62 22-73 (222)
No 1
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.41 E-value=30 Score=26.92 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 27 EAQELLSNIALLETTVSKLEQEMVSLHFQLSQ 58 (483)
Q Consensus 27 ~~~eLl~eia~lE~eV~~LE~~v~~l~~~l~~ 58 (483)
+.+.|-+||+-|+.+--.|++++..+.++|..
T Consensus 2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~~ 33 (101)
T d2azeb1 2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRL 33 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999998865
No 2
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.27 E-value=44 Score=23.54 Aligned_cols=27 Identities=41% Similarity=0.620 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 27 EAQELLSNIALLETTVSKLEQEMVSLHF 54 (483)
Q Consensus 27 ~~~eLl~eia~lE~eV~~LE~~v~~l~~ 54 (483)
++.+|-+||+.|...|..||++ -+||+
T Consensus 2 e~~~L~~ei~elk~~v~~lEkE-RdFYF 28 (59)
T d1wu9a1 2 EAAELMQQVNVLKLTVEDLEKE-RDFYF 28 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 5778999999999999999988 56665
No 3
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.66 E-value=52 Score=23.69 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 28 AQELLSNIALLETTVSKLEQEMVSLHFQL 56 (483)
Q Consensus 28 ~~eLl~eia~lE~eV~~LE~~v~~l~~~l 56 (483)
.+.|-.+++.++.++..|.++...|+++|
T Consensus 49 I~~L~~~~~~l~~~~~~L~~~~~~L~~~l 77 (79)
T d1nlwa_ 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555555555555443
No 4
>d1hywa_ d.186.1.1 (A:) Head-to-tail joining protein W, gpW {Bacteriophage lambda [TaxId: 10710]}
Probab=19.80 E-value=23 Score=24.93 Aligned_cols=29 Identities=7% Similarity=0.267 Sum_probs=23.9
Q ss_pred eeecCccchhhhhhHHHHHHHHHHHHhcc
Q 011569 235 WMSVGKQQLEYASGALKTFRTLVEQLAKV 263 (483)
Q Consensus 235 ~~s~d~~~~~ya~~~l~~fr~lv~~L~~V 263 (483)
.+.-|+.++.|...-+..++.++++|+.+
T Consensus 25 svqKDGr~Veytaasi~eL~~yI~~lE~~ 53 (58)
T d1hywa_ 25 TVQKDGRRVEFTATSVSDLKKYIAELEVQ 53 (58)
T ss_dssp EEECSSCEEEECTTTHHHHHHHHHHHHHH
T ss_pred EEecCCcEEEEeccCHHHHHHHHHHHHHH
Confidence 34678899999888888889999999864
No 5
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]}
Probab=19.58 E-value=46 Score=27.93 Aligned_cols=46 Identities=17% Similarity=0.098 Sum_probs=30.7
Q ss_pred CCCCeEEEEeccCCCC--CCC-cceeccchH-----------HHHHHHHHHHHHHhcccc
Q 011569 360 EYEPLVAFALSCGMYS--SPA-ISIYTAKNV-----------REELQEAQRDFIRASVGF 405 (483)
Q Consensus 360 ~~dPrvhFAL~cGs~S--~P~-lrvYta~~v-----------~~qLe~a~~efl~~~v~v 405 (483)
..|..+||||+.|.++ .|+ |||-....+ ..+|+.|.+..-....||
T Consensus 26 ~~~~~~HlALvkG~i~~~~~vlVRVHs~~~~~Dv~~~~~~~~~~~L~~al~~I~~~g~Gv 85 (174)
T d2bz1a1 26 LATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLRCDCGFQLEAALTQIAEEGRGI 85 (174)
T ss_dssp TTTCCEEEEEEESCCCSSSCEEEEEEECCHHHHTSCCSSCSHHHHHHHHHHHHHHHTSEE
T ss_pred CCCCeEEEEEEEcCcccccceeEEeeecccccceecccccccchhHHHHHHHHHHcCCcE
Confidence 4578899999999764 344 587654433 357877777665555443
No 6
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.08 E-value=1e+02 Score=22.45 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 32 LSNIALLETTVSKLEQEMVSLHFQ 55 (483)
Q Consensus 32 l~eia~lE~eV~~LE~~v~~l~~~ 55 (483)
+.-|-.|+.++..|++++..|+.+
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~ 74 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKR 74 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666665543
No 7
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=17.67 E-value=79 Score=24.02 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 25 SHEAQELLSNIALLETTVSKLEQEMVSLHFQLSQER 60 (483)
Q Consensus 25 p~~~~eLl~eia~lE~eV~~LE~~v~~l~~~l~~E~ 60 (483)
+..+.+|++|+..|-.+|..||+++..+...+..-.
T Consensus 63 ~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~l 98 (110)
T d1seta1 63 PEEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999988887766443
No 8
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=16.96 E-value=70 Score=24.99 Aligned_cols=31 Identities=16% Similarity=0.389 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011569 27 EAQELLSNIALLETTVSKLEQEMVSLHFQLS 57 (483)
Q Consensus 27 ~~~eLl~eia~lE~eV~~LE~~v~~l~~~l~ 57 (483)
+-+||.+++.+|+.++..|++++..|...+-
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~ 32 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATIS 32 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999987664
No 9
>d1v74b_ a.24.20.1 (B:) Colicin D immunity protein {Escherichia coli [TaxId: 562]}
Probab=16.48 E-value=34 Score=25.97 Aligned_cols=18 Identities=28% Similarity=0.674 Sum_probs=15.7
Q ss_pred CccccHHHHHHHHHHHHH
Q 011569 133 PNQLSEEMVRCMKNIFMS 150 (483)
Q Consensus 133 Pn~LSE~mvrc~~~Iy~~ 150 (483)
-++++.++-.|++.|||-
T Consensus 37 ~~~~~~~l~eClssiF~~ 54 (87)
T d1v74b_ 37 VKDLSPNILNCGEELFMA 54 (87)
T ss_dssp CSSCCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHH
Confidence 457788999999999996
No 10
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.31 E-value=1.4e+02 Score=25.70 Aligned_cols=41 Identities=27% Similarity=0.326 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHh
Q 011569 22 SCFSHEAQELLSNIALLE-----------TTVSKLEQEMVSLHFQLSQERNE 62 (483)
Q Consensus 22 ~~lp~~~~eLl~eia~lE-----------~eV~~LE~~v~~l~~~l~~E~~~ 62 (483)
..++...++-|.++..+. +|+..||++...+|+-+|++|.+
T Consensus 22 ~~~~~~~~~~i~~L~~iQ~e~~~l~~e~~~e~~~le~k~~~~~~ply~~R~~ 73 (222)
T d2e50a1 22 ETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSE 73 (222)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 345566665555444433 35677777778888888888864
Done!