Query 011571
Match_columns 483
No_of_seqs 297 out of 590
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 02:51:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13178 DUF4005: Protein of u 99.5 1.4E-14 2.9E-19 125.9 6.4 57 411-467 34-91 (102)
2 PF00612 IQ: IQ calmodulin-bin 97.9 9.8E-06 2.1E-10 51.6 2.9 21 120-140 1-21 (21)
3 smart00015 IQ Short calmodulin 97.4 0.00013 2.8E-09 48.6 2.6 22 119-140 2-23 (26)
4 KOG0160 Myosin class V heavy c 97.2 0.00063 1.4E-08 77.9 6.6 64 118-185 671-735 (862)
5 KOG0520 Uncharacterized conser 96.5 0.0017 3.8E-08 74.9 3.7 73 117-189 807-887 (975)
6 PTZ00014 myosin-A; Provisional 95.6 0.0097 2.1E-07 68.6 3.8 41 121-161 778-819 (821)
7 KOG0160 Myosin class V heavy c 95.2 0.031 6.6E-07 64.6 6.3 65 118-185 694-758 (862)
8 COG5022 Myosin heavy chain [Cy 93.0 0.18 4E-06 60.8 6.5 66 118-184 743-809 (1463)
9 KOG2128 Ras GTPase-activating 90.2 0.41 8.8E-06 57.7 5.5 67 119-185 564-639 (1401)
10 KOG0520 Uncharacterized conser 89.9 0.86 1.9E-05 53.6 7.6 64 121-184 834-930 (975)
11 PF00612 IQ: IQ calmodulin-bin 89.9 0.16 3.5E-06 32.2 1.1 19 143-161 2-20 (21)
12 KOG0164 Myosin class I heavy c 88.6 0.7 1.5E-05 52.8 5.5 55 120-185 696-751 (1001)
13 KOG0163 Myosin class VI heavy 83.8 12 0.00026 43.6 12.0 34 119-152 812-846 (1259)
14 smart00015 IQ Short calmodulin 81.8 0.73 1.6E-05 30.5 1.1 19 143-161 4-22 (26)
15 PTZ00014 myosin-A; Provisional 81.1 2.2 4.9E-05 49.7 5.3 38 145-185 780-817 (821)
16 KOG4427 E3 ubiquitin protein l 79.8 1.6 3.4E-05 50.4 3.4 24 118-141 28-51 (1096)
17 KOG0942 E3 ubiquitin protein l 74.9 1.8 3.9E-05 50.6 2.2 25 117-141 26-50 (1001)
18 KOG0377 Protein serine/threoni 69.5 5.1 0.00011 44.0 3.9 43 118-160 15-58 (631)
19 KOG2128 Ras GTPase-activating 59.6 14 0.0003 45.3 5.4 61 124-187 539-611 (1401)
20 KOG0161 Myosin class II heavy 58.0 42 0.00091 43.0 9.2 39 121-159 774-816 (1930)
21 KOG0162 Myosin class I heavy c 57.1 8.1 0.00017 44.8 2.8 38 121-161 697-735 (1106)
22 KOG0161 Myosin class II heavy 46.0 19 0.0004 46.0 3.7 41 145-185 776-816 (1930)
23 PF08763 Ca_chan_IQ: Voltage g 38.4 29 0.00063 25.5 2.3 21 119-139 8-28 (35)
24 PF15157 IQ-like: IQ-like 29.0 41 0.00088 29.5 2.1 21 119-139 46-66 (97)
25 COG5022 Myosin heavy chain [Cy 24.7 1.6E+02 0.0035 36.9 6.6 67 117-184 790-858 (1463)
26 KOG0165 Microtubule-associated 24.5 68 0.0015 37.8 3.4 24 118-141 941-964 (1023)
27 PRK10984 DNA-binding transcrip 21.9 26 0.00057 32.4 -0.4 7 271-278 53-59 (127)
No 1
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=99.52 E-value=1.4e-14 Score=125.91 Aligned_cols=57 Identities=44% Similarity=0.633 Sum_probs=49.5
Q ss_pred CCCCCCCCccccccccCCCCCCC-CCCCCCCCcCCccCcccCCCCCCCCCCCCCCCCc
Q 011571 411 VPSYMAPTQSTKARSRGTSPLGL-NGTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRV 467 (483)
Q Consensus 411 ~PsYMa~TeSAKAK~R~qs~p~~-~~t~e~~~~~~~kkRlS~p~s~~~~rr~s~~pk~ 467 (483)
+|||||+|||||||+|+||+|++ ++++|.+....++||||||.+.......+..++.
T Consensus 34 ~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~~~~~~~~~~~~~~~~~ 91 (102)
T PF13178_consen 34 LPSYMAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSLPGSSNSGSSSSRSPRT 91 (102)
T ss_pred CCCccchhhhhhhhhhccCCcccCCCccccccccccccccccCCCCCCCcCCCCCCcc
Confidence 89999999999999999999999 8887776667889999999887777777777664
No 2
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.91 E-value=9.8e-06 Score=51.62 Aligned_cols=21 Identities=48% Similarity=0.751 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHH
Q 011571 120 EIAVIKIQTAFRGYLARRALR 140 (483)
Q Consensus 120 e~AAI~IQsafRGylARRalr 140 (483)
+.|||.||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999985
No 3
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.39 E-value=0.00013 Score=48.64 Aligned_cols=22 Identities=50% Similarity=0.718 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHhhhhhhHHHHH
Q 011571 119 EEIAVIKIQTAFRGYLARRALR 140 (483)
Q Consensus 119 ee~AAI~IQsafRGylARRalr 140 (483)
++.+|++||+.||||++|+.|+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5789999999999999999984
No 4
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.17 E-value=0.00063 Score=77.93 Aligned_cols=64 Identities=23% Similarity=0.288 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhh
Q 011571 118 QEEIAVIKIQTAFRGYLARRALRA-LRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM 185 (483)
Q Consensus 118 ree~AAI~IQsafRGylARRalra-LkgiVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~ 185 (483)
....+++.||..||||+.|+.|.. .++++-+|+++||.++|+. ++ ...|++.+|..+|+...|+
T Consensus 671 vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~---~~-~~~aai~~q~~~r~~~~r~ 735 (862)
T KOG0160|consen 671 VLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRE---TE-REAAAIGIQKECRSYLNRR 735 (862)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh---hH-HHHHHHHhHHHHHHHHHHH
Confidence 445678889999999999999998 5558899999999999981 11 3444444555544444443
No 5
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.55 E-value=0.0017 Score=74.90 Aligned_cols=73 Identities=23% Similarity=0.375 Sum_probs=60.2
Q ss_pred chhHHHHHHHHHHhhhhhhHHHHHHHHH-HHHHhhhhcccchhhhHHHh------HH-hhhhHHHHHHHHHHHHHhhhhh
Q 011571 117 SQEEIAVIKIQTAFRGYLARRALRALRG-LVRLKSLIQGHSVKRQATTT------LR-CMQTLARVQSQIRARRIRMSEE 188 (483)
Q Consensus 117 ~ree~AAI~IQsafRGylARRalraLkg-iVrLQAlvRG~~VRrqa~~t------lr-~~qA~vriQs~vR~rr~R~~~~ 188 (483)
...-.||..||.-||||+.|+.|..++. +|++|+-|||+.+|+++... ++ -+-++-++|+.+|+++.|...|
T Consensus 807 r~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e 886 (975)
T KOG0520|consen 807 RSDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFE 886 (975)
T ss_pred ccchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchh
Confidence 3556789999999999999999999666 99999999999999999632 22 3456677999999998887654
Q ss_pred h
Q 011571 189 N 189 (483)
Q Consensus 189 ~ 189 (483)
.
T Consensus 887 ~ 887 (975)
T KOG0520|consen 887 E 887 (975)
T ss_pred c
Confidence 4
No 6
>PTZ00014 myosin-A; Provisional
Probab=95.60 E-value=0.0097 Score=68.59 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHH-HHHHHHHhhhhcccchhhhH
Q 011571 121 IAVIKIQTAFRGYLARRALRA-LRGLVRLKSLIQGHSVKRQA 161 (483)
Q Consensus 121 ~AAI~IQsafRGylARRalra-LkgiVrLQAlvRG~~VRrqa 161 (483)
..++.||++||||++|+.|.. +.++++||+.+||+++++..
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 368899999999999999998 66789999999999988764
No 7
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=95.25 E-value=0.031 Score=64.59 Aligned_cols=65 Identities=28% Similarity=0.238 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhh
Q 011571 118 QEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM 185 (483)
Q Consensus 118 ree~AAI~IQsafRGylARRalraLkgiVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~ 185 (483)
....+++.||+.+||+++|+........+.+|..+|+++.|+++. ....+++.+|+.+|+..+|.
T Consensus 694 ~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~---~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 694 QLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYR---ALIPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcc
Confidence 567899999999999999983223445788999999999999994 46678999999999999998
No 8
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=92.96 E-value=0.18 Score=60.76 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHh
Q 011571 118 QEEIAVIKIQTAFRGYLARRALRA-LRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIR 184 (483)
Q Consensus 118 ree~AAI~IQsafRGylARRalra-LkgiVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R 184 (483)
.-...+++||++|||++.||+|.. ++.+..+|.+.+|..+++.... ---....+.+|..++...-|
T Consensus 743 ~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~r 809 (1463)
T COG5022 743 KLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDY-ELKWRLFIKLQPLLSLLGSR 809 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhccc-chHHHhHHHhhHHhHHHhhH
Confidence 456789999999999999999888 8888889999999988876643 22345566667666554433
No 9
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=90.22 E-value=0.41 Score=57.69 Aligned_cols=67 Identities=25% Similarity=0.358 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHhhhhhh---HHHHH-H-HHHHHHHhhhhcccchhhhHHH----hHHhhhhHHHHHHHHHHHHHhh
Q 011571 119 EEIAVIKIQTAFRGYLA---RRALR-A-LRGLVRLKSLIQGHSVKRQATT----TLRCMQTLARVQSQIRARRIRM 185 (483)
Q Consensus 119 ee~AAI~IQsafRGylA---RRalr-a-LkgiVrLQAlvRG~~VRrqa~~----tlr~~qA~vriQs~vR~rr~R~ 185 (483)
..-..+.||.++|||+. +..+. . .+-+|.+|++.||+++|+.+.. -..||...+.+|+.+|++..|.
T Consensus 564 ~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~ 639 (1401)
T KOG2128|consen 564 QTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRK 639 (1401)
T ss_pred cCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccch
Confidence 55678899999999993 22222 2 6779999999999999999863 3458999999999999998876
No 10
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=89.92 E-value=0.86 Score=53.56 Aligned_cols=64 Identities=28% Similarity=0.408 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHH-------HH-H---HHHhhhhcccchhhhHH----------------------HhHHh
Q 011571 121 IAVIKIQTAFRGYLARRALRAL-------RG-L---VRLKSLIQGHSVKRQAT----------------------TTLRC 167 (483)
Q Consensus 121 ~AAI~IQsafRGylARRalraL-------kg-i---VrLQAlvRG~~VRrqa~----------------------~tlr~ 167 (483)
.=+|+||+++|||-.|+.|+.| +- + -++|+-+||+..|+-.. .+.+-
T Consensus 834 ~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~ 913 (975)
T KOG0520|consen 834 QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERL 913 (975)
T ss_pred CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 3489999999999999999862 11 1 22367778877665432 12233
Q ss_pred hhhHHHHHHHHHHHHHh
Q 011571 168 MQTLARVQSQIRARRIR 184 (483)
Q Consensus 168 ~qA~vriQs~vR~rr~R 184 (483)
-+|+++||+.+|....+
T Consensus 914 ~~A~~~VQsm~rs~~a~ 930 (975)
T KOG0520|consen 914 TRAVVRVQSMFRSPKAQ 930 (975)
T ss_pred HHHHHHHHHHhcCHHHH
Confidence 47899999999887766
No 11
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=89.91 E-value=0.16 Score=32.22 Aligned_cols=19 Identities=11% Similarity=0.282 Sum_probs=14.3
Q ss_pred HHHHHHhhhhcccchhhhH
Q 011571 143 RGLVRLKSLIQGHSVKRQA 161 (483)
Q Consensus 143 kgiVrLQAlvRG~~VRrqa 161 (483)
+.+|.||+.+||+++|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4567788888888888775
No 12
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=88.61 E-value=0.7 Score=52.82 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHH-HHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhh
Q 011571 120 EIAVIKIQTAFRGYLARRALRALRGL-VRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM 185 (483)
Q Consensus 120 e~AAI~IQsafRGylARRalraLkgi-VrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~ 185 (483)
-.-++.||.+|||+++|..|+.++.. +.++ ..|.+-+ -..+..||..+|+.+.++
T Consensus 696 ~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~----------ks~v~el~~~~rg~k~~r 751 (1001)
T KOG0164|consen 696 PSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKL----------KSYVQELQRRFRGAKQMR 751 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----------HHHHHHHHHHHHhhhhcc
Confidence 45688999999999999999997764 4444 4442222 234566888888887665
No 13
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=83.81 E-value=12 Score=43.57 Aligned_cols=34 Identities=35% Similarity=0.642 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHhhhh
Q 011571 119 EEIAVIKIQTAFRGYLARRALRA-LRGLVRLKSLI 152 (483)
Q Consensus 119 ee~AAI~IQsafRGylARRalra-LkgiVrLQAlv 152 (483)
...+.+++|...||||+|++++- +-|++++-+|.
T Consensus 812 Rae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l~ 846 (1259)
T KOG0163|consen 812 RAECVLKAQRIARGYLARKRHRPRIAGIRKINALL 846 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Confidence 45678999999999999999988 77787776665
No 14
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=81.79 E-value=0.73 Score=30.52 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=15.7
Q ss_pred HHHHHHhhhhcccchhhhH
Q 011571 143 RGLVRLKSLIQGHSVKRQA 161 (483)
Q Consensus 143 kgiVrLQAlvRG~~VRrqa 161 (483)
+.++.||+.+||+++|+++
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4578889999999888886
No 15
>PTZ00014 myosin-A; Provisional
Probab=81.11 E-value=2.2 Score=49.69 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=33.0
Q ss_pred HHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhh
Q 011571 145 LVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM 185 (483)
Q Consensus 145 iVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~ 185 (483)
++.||+.+||++.|+.+. +..++++.||+.+|++..++
T Consensus 780 ~~~iq~~~r~~~~r~~~~---~~~~~~~~iQ~~~R~~l~~~ 817 (821)
T PTZ00014 780 VSVLEALILKIKKKRKVR---KNIKSLVRIQAHLRRHLVIA 817 (821)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999984 35789999999999988765
No 16
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.79 E-value=1.6 Score=50.35 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHHH
Q 011571 118 QEEIAVIKIQTAFRGYLARRALRA 141 (483)
Q Consensus 118 ree~AAI~IQsafRGylARRalra 141 (483)
+.+.||+.||..+|||++|+.+..
T Consensus 28 rr~~aa~~iq~~lrsyl~Rkk~~~ 51 (1096)
T KOG4427|consen 28 RREAAALFIQRVLRSYLVRKKAQI 51 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999874
No 17
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.89 E-value=1.8 Score=50.57 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.2
Q ss_pred chhHHHHHHHHHHhhhhhhHHHHHH
Q 011571 117 SQEEIAVIKIQTAFRGYLARRALRA 141 (483)
Q Consensus 117 ~ree~AAI~IQsafRGylARRalra 141 (483)
.++|.+||+||+.||||++|+..+.
T Consensus 26 rk~e~~av~vQs~~Rg~~~r~~~~~ 50 (1001)
T KOG0942|consen 26 RKQEKNAVKVQSFWRGFRVRHNQKL 50 (1001)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999987765
No 18
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=69.50 E-value=5.1 Score=44.00 Aligned_cols=43 Identities=28% Similarity=0.229 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh-cccchhhh
Q 011571 118 QEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLI-QGHSVKRQ 160 (483)
Q Consensus 118 ree~AAI~IQsafRGylARRalraLkgiVrLQAlv-RG~~VRrq 160 (483)
+--.|||.||.-||+|.||...+......-+|+|- -|++=.-+
T Consensus 15 raikaAilIQkWYRr~~ARle~rrr~twqIFqslEYA~eQdQ~k 58 (631)
T KOG0377|consen 15 RAIKAAILIQKWYRRYEARLEARRRCTWQIFQSLEYAGEQDQAK 58 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcCccchHH
Confidence 45789999999999999999988766677778873 45544333
No 19
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=59.58 E-value=14 Score=45.30 Aligned_cols=61 Identities=21% Similarity=0.255 Sum_probs=46.3
Q ss_pred HHHHHHhhhhhhHHHHHHHH--------HHHHHhhhhcccchhhhHH----HhHHhhhhHHHHHHHHHHHHHhhhh
Q 011571 124 IKIQTAFRGYLARRALRALR--------GLVRLKSLIQGHSVKRQAT----TTLRCMQTLARVQSQIRARRIRMSE 187 (483)
Q Consensus 124 I~IQsafRGylARRalraLk--------giVrLQAlvRG~~VRrqa~----~tlr~~qA~vriQs~vR~rr~R~~~ 187 (483)
.+||+-.|||..|-+++... -++.+|+++||.++ ++ .......-+|.+|+..|+...|.+.
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~ 611 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKKY 611 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhhH
Confidence 44599999999999888732 25678999999986 22 1122346689999999999988763
No 20
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=58.03 E-value=42 Score=43.02 Aligned_cols=39 Identities=28% Similarity=0.425 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHH----HHHHHHHhhhhcccchhh
Q 011571 121 IAVIKIQTAFRGYLARRALRA----LRGLVRLKSLIQGHSVKR 159 (483)
Q Consensus 121 ~AAI~IQsafRGylARRalra----LkgiVrLQAlvRG~~VRr 159 (483)
.-.+.+|+++||||+|+.|.. +.+|..||.=+|-++..|
T Consensus 774 ~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr 816 (1930)
T KOG0161|consen 774 QIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLR 816 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345677888888888887775 445666666665554433
No 21
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=57.11 E-value=8.1 Score=44.79 Aligned_cols=38 Identities=29% Similarity=0.474 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHH-HHHhhhhcccchhhhH
Q 011571 121 IAVIKIQTAFRGYLARRALRALRGL-VRLKSLIQGHSVKRQA 161 (483)
Q Consensus 121 ~AAI~IQsafRGylARRalraLkgi-VrLQAlvRG~~VRrqa 161 (483)
-=|.+||.|||.|++||.|..+|-- .+ |+-|.--||.+
T Consensus 697 ~~A~~IQkAWRrfv~rrky~k~ree~t~---ll~gKKeRRr~ 735 (1106)
T KOG0162|consen 697 GMARRIQKAWRRFVARRKYEKMREEATK---LLLGKKERRRY 735 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHHH
Confidence 3588999999999999998876642 22 33444444444
No 22
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=46.03 E-value=19 Score=45.96 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=36.7
Q ss_pred HHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhh
Q 011571 145 LVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM 185 (483)
Q Consensus 145 iVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~ 185 (483)
|+.+||.+||+++|+.+..-...+.++..||..+|.+...+
T Consensus 776 i~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr 816 (1930)
T KOG0161|consen 776 ITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLR 816 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 67889999999999999988999999999999999985443
No 23
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=38.36 E-value=29 Score=25.49 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHhhhhhhHHHH
Q 011571 119 EEIAVIKIQTAFRGYLARRAL 139 (483)
Q Consensus 119 ee~AAI~IQsafRGylARRal 139 (483)
+--||.+||-.||-|.+|+.-
T Consensus 8 K~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 8 KFYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999988763
No 24
>PF15157 IQ-like: IQ-like
Probab=28.99 E-value=41 Score=29.52 Aligned_cols=21 Identities=43% Similarity=0.468 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHhhhhhhHHHH
Q 011571 119 EEIAVIKIQTAFRGYLARRAL 139 (483)
Q Consensus 119 ee~AAI~IQsafRGylARRal 139 (483)
-|.-+..||.+||-||+|...
T Consensus 46 Leskvkiiqrawre~lq~qd~ 66 (97)
T PF15157_consen 46 LESKVKIIQRAWREYLQRQDP 66 (97)
T ss_pred hhHHHHHHHHHHHHHHHhcCC
Confidence 355578899999999998653
No 25
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=24.67 E-value=1.6e+02 Score=36.94 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=46.2
Q ss_pred chhHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHh-hhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHh
Q 011571 117 SQEEIAVIKIQTAFRGYLARRALRA-LRGLVRLK-SLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIR 184 (483)
Q Consensus 117 ~ree~AAI~IQsafRGylARRalra-LkgiVrLQ-AlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R 184 (483)
.....++++||..+|.+.-|..++. +..|..|| .+.++..++-.. .--..+.+.+.+|..+|+...+
T Consensus 790 ~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~-e~~~~~~~~~L~~~~~rs~~~~ 858 (1463)
T COG5022 790 ELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETE-EVEFSLKAEVLIQKFGRSLKAK 858 (1463)
T ss_pred chHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHhhhhh
Confidence 3567789999999999999999998 66688888 555555555422 2233455666666666655443
No 26
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=24.55 E-value=68 Score=37.77 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHHH
Q 011571 118 QEEIAVIKIQTAFRGYLARRALRA 141 (483)
Q Consensus 118 ree~AAI~IQsafRGylARRalra 141 (483)
....||+.||.+.|||.+|+.|+.
T Consensus 941 nkKkaavviqkmirgfiarrkfqm 964 (1023)
T KOG0165|consen 941 NKKKAAVVIQKMIRGFIARRKFQM 964 (1023)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999985
No 27
>PRK10984 DNA-binding transcriptional regulator Crl; Provisional
Probab=21.91 E-value=26 Score=32.43 Aligned_cols=7 Identities=71% Similarity=2.637 Sum_probs=5.4
Q ss_pred CCCCchhh
Q 011571 271 HWGWSWLE 278 (483)
Q Consensus 271 ~wgWsWLE 278 (483)
=||| |||
T Consensus 53 FWGW-Wme 59 (127)
T PRK10984 53 FWGW-WME 59 (127)
T ss_pred hhhh-hee
Confidence 4999 776
Done!