Query 011571
Match_columns 483
No_of_seqs 297 out of 590
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:55:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011571.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011571hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 98.9 1.1E-09 3.8E-14 84.1 5.0 53 118-171 3-56 (58)
2 1n2d_C IQ2 and IQ3 motifs from 98.6 2.6E-08 8.8E-13 73.6 4.1 42 120-161 3-47 (48)
3 2dfs_A Myosin-5A; myosin-V, in 98.5 1.8E-07 6.2E-12 107.4 7.9 66 120-186 768-834 (1080)
4 2dfs_A Myosin-5A; myosin-V, in 98.4 1.4E-07 4.6E-12 108.5 6.3 69 117-186 813-882 (1080)
5 2l53_B CAM, voltage-gated sodi 98.0 3.2E-06 1.1E-10 58.4 2.5 25 116-140 2-26 (31)
6 2kxw_B Sodium channel protein 97.9 4.4E-06 1.5E-10 56.1 1.6 23 117-139 3-25 (27)
7 1n2d_C IQ2 and IQ3 motifs from 97.6 8E-05 2.7E-09 54.7 4.7 42 143-185 4-45 (48)
8 2ix7_C Myosin-5A; contractIle 96.6 0.0019 6.4E-08 49.1 4.3 41 143-186 6-46 (58)
9 1wdc_A Scallop myosin; calcium 96.6 0.0017 5.9E-08 50.5 4.1 22 120-141 6-27 (64)
10 2bl0_A Major plasmodial myosin 96.5 0.0017 5.8E-08 50.5 3.6 43 121-185 5-47 (63)
11 1kk8_A Myosin heavy chain, str 96.2 0.0026 8.8E-08 71.7 4.1 43 119-161 778-824 (837)
12 1wdc_A Scallop myosin; calcium 96.2 0.0047 1.6E-07 48.0 4.4 42 145-186 9-50 (64)
13 2bl0_A Major plasmodial myosin 96.1 0.0041 1.4E-07 48.3 3.8 15 146-160 8-22 (63)
14 3gn4_A Myosin-VI; unconvention 96.1 0.0043 1.5E-07 56.7 4.5 34 119-152 44-78 (148)
15 1i84_S Smooth muscle myosin he 95.4 0.075 2.6E-06 61.7 11.9 42 120-161 792-837 (1184)
16 4dck_A Sodium channel protein 92.0 0.085 2.9E-06 49.0 3.2 25 117-141 127-151 (168)
17 1kk8_A Myosin heavy chain, str 91.2 0.22 7.5E-06 56.2 6.0 43 144-186 781-823 (837)
18 1i84_S Smooth muscle myosin he 86.7 0.62 2.1E-05 54.1 5.7 44 142-185 791-835 (1184)
19 1w7j_A Myosin VA; motor protei 86.2 0.38 1.3E-05 54.0 3.5 26 119-144 767-792 (795)
20 4anj_A Unconventional myosin-V 74.3 2.1 7.2E-05 49.5 4.3 36 119-155 774-810 (1052)
21 3gn4_A Myosin-VI; unconvention 47.7 18 0.0006 33.0 4.3 29 144-175 47-75 (148)
22 3dvk_B Voltage-dependent R-typ 29.8 21 0.00071 23.1 1.3 19 119-137 5-23 (23)
23 4anj_A Unconventional myosin-V 25.5 50 0.0017 38.3 4.4 41 142-185 774-814 (1052)
24 3bxl_B CAM, voltage-dependent 25.4 39 0.0013 22.4 2.0 19 120-138 2-20 (26)
25 3dve_B Voltage-dependent N-typ 23.4 22 0.00074 23.0 0.5 19 119-137 4-22 (23)
26 2f3y_B Voltage-dependent L-typ 21.8 45 0.0015 22.0 1.7 19 122-140 4-22 (26)
27 2be6_D Voltage-dependent L-typ 20.1 61 0.0021 23.1 2.3 21 119-139 10-30 (37)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.90 E-value=1.1e-09 Score=84.09 Aligned_cols=53 Identities=23% Similarity=0.403 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHhhhhcccchhhhHHHhHHhhhhH
Q 011571 118 QEEIAVIKIQTAFRGYLARRALRALR-GLVRLKSLIQGHSVKRQATTTLRCMQTL 171 (483)
Q Consensus 118 ree~AAI~IQsafRGylARRalraLk-giVrLQAlvRG~~VRrqa~~tlr~~qA~ 171 (483)
+.+.|||.||+.||||++|+.|..++ +++.||+.+||+++|+.+.. ++...|+
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~-~r~~~aA 56 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKF-LRRTKAA 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCc
Confidence 57889999999999999999999955 69999999999999999943 4444443
No 2
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.61 E-value=2.6e-08 Score=73.57 Aligned_cols=42 Identities=19% Similarity=0.376 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHH---HHHHHhhhhcccchhhhH
Q 011571 120 EIAVIKIQTAFRGYLARRALRALR---GLVRLKSLIQGHSVKRQA 161 (483)
Q Consensus 120 e~AAI~IQsafRGylARRalraLk---giVrLQAlvRG~~VRrqa 161 (483)
..|||.||+.||||++|+.|..++ ..+.||+.+||+++|+.+
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 458999999999999999998843 678888888888888865
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.46 E-value=1.8e-07 Score=107.44 Aligned_cols=66 Identities=27% Similarity=0.404 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHH-HHHHHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhhh
Q 011571 120 EIAVIKIQTAFRGYLARRALRA-LRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMS 186 (483)
Q Consensus 120 e~AAI~IQsafRGylARRalra-LkgiVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~~ 186 (483)
..||++||+.||||++|+.|+. ..+++.||+.+||+++|+.+. .++...|++.||+.+|++..|+.
T Consensus 768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~-~lr~~~AAi~IQs~~Rg~~~Rk~ 834 (1080)
T 2dfs_A 768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYAT-FLRRTRAAIIIQKFQRMYVVRKR 834 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhccc-ccccchhHHHHHHHHhhHHHHHH
Confidence 5799999999999999999999 456899999999999999984 57788999999999999999875
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.44 E-value=1.4e-07 Score=108.51 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=54.4
Q ss_pred chhHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhhh
Q 011571 117 SQEEIAVIKIQTAFRGYLARRALRA-LRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMS 186 (483)
Q Consensus 117 ~ree~AAI~IQsafRGylARRalra-LkgiVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~~ 186 (483)
.+++.||++||+.||||++|+.|.. +.+++.||+.+||+++|+++.. ++...+++.||+.+|++..|+.
T Consensus 813 lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~-lr~~~aav~IQ~~~Rg~l~R~~ 882 (1080)
T 2dfs_A 813 LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQM-MLREHKSIIIQKHVRGWLARVH 882 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTHHHHH
T ss_pred cccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999998 5558999999999999998843 4555667777777776666654
No 5
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=97.97 E-value=3.2e-06 Score=58.44 Aligned_cols=25 Identities=40% Similarity=0.620 Sum_probs=22.2
Q ss_pred CchhHHHHHHHHHHhhhhhhHHHHH
Q 011571 116 KSQEEIAVIKIQTAFRGYLARRALR 140 (483)
Q Consensus 116 ~~ree~AAI~IQsafRGylARRalr 140 (483)
..+||.||+.||.|||+||.|+.+.
T Consensus 2 rk~Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 2 PGSEEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3579999999999999999998764
No 6
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=97.86 E-value=4.4e-06 Score=56.09 Aligned_cols=23 Identities=43% Similarity=0.732 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHhhhhhhHHHH
Q 011571 117 SQEEIAVIKIQTAFRGYLARRAL 139 (483)
Q Consensus 117 ~ree~AAI~IQsafRGylARRal 139 (483)
.+||.||+.||.|||+||.|+.+
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~~~ 25 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQKV 25 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 57999999999999999998753
No 7
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=97.55 E-value=8e-05 Score=54.66 Aligned_cols=42 Identities=17% Similarity=0.274 Sum_probs=37.1
Q ss_pred HHHHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhh
Q 011571 143 RGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM 185 (483)
Q Consensus 143 kgiVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~ 185 (483)
+.++.||+.+||+++|+++. .++...|++.||+.+||..+|.
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~-~~~~~~aai~IQ~~~Rg~~~Rk 45 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVN-DEMKVNCATLLQAAYRGHSIRA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHH
Confidence 56899999999999999994 4666789999999999998875
No 8
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=96.60 E-value=0.0019 Score=49.13 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=35.4
Q ss_pred HHHHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhhh
Q 011571 143 RGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMS 186 (483)
Q Consensus 143 kgiVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~~ 186 (483)
...+.||+.+||+++|+.+.. ...+++.||+.+||+.+|..
T Consensus 6 ~aai~IQ~~~Rg~~~Rk~~~~---~r~aai~IQ~~~Rg~~aR~~ 46 (58)
T 2ix7_C 6 AACIRIQKTIRGWLLRKRYLC---MQRAAITVQRYVRGYQARCY 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999943 34699999999999988874
No 9
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.60 E-value=0.0017 Score=50.53 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHH
Q 011571 120 EIAVIKIQTAFRGYLARRALRA 141 (483)
Q Consensus 120 e~AAI~IQsafRGylARRalra 141 (483)
...++.||+..|||++|+.|..
T Consensus 6 ~~i~t~~Qa~~RG~l~R~~~~k 27 (64)
T 1wdc_A 6 SKIISMFQAHIRGYLIRKAYKK 27 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666654
No 10
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.52 E-value=0.0017 Score=50.49 Aligned_cols=43 Identities=26% Similarity=0.235 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhh
Q 011571 121 IAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM 185 (483)
Q Consensus 121 ~AAI~IQsafRGylARRalraLkgiVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~ 185 (483)
..++.||+..|||++|+.|.. .+....|+..||..+|++..++
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k----------------------~~~~~~A~~iIQrn~R~~~~lr 47 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQ----------------------AREKSVSARIIQDNIRAYLEFK 47 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHhhc
Confidence 345566666666666666554 3334445556666666665544
No 11
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.20 E-value=0.0026 Score=71.72 Aligned_cols=43 Identities=30% Similarity=0.375 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhhhhhhHHHHHHH----HHHHHHhhhhcccchhhhH
Q 011571 119 EEIAVIKIQTAFRGYLARRALRAL----RGLVRLKSLIQGHSVKRQA 161 (483)
Q Consensus 119 ee~AAI~IQsafRGylARRalraL----kgiVrLQAlvRG~~VRrqa 161 (483)
-..+|+.||++|||||+|+.|+.+ ..++.||..+||+++||..
T Consensus 778 l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 778 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 345788999999999999999875 3467777777777777665
No 12
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.19 E-value=0.0047 Score=48.03 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=38.0
Q ss_pred HHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhhh
Q 011571 145 LVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMS 186 (483)
Q Consensus 145 iVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~~ 186 (483)
++.+||.+||+++|+.+...+....|+..||..+|++..++.
T Consensus 9 ~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 9 ISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 789999999999999999888888999999999999887653
No 13
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.13 E-value=0.0041 Score=48.31 Aligned_cols=15 Identities=7% Similarity=0.217 Sum_probs=7.6
Q ss_pred HHHhhhhcccchhhh
Q 011571 146 VRLKSLIQGHSVKRQ 160 (483)
Q Consensus 146 VrLQAlvRG~~VRrq 160 (483)
+.+||.+||+++|+.
T Consensus 8 t~~Qa~~RG~l~R~~ 22 (63)
T 2bl0_A 8 KVVQAAARGWVERKH 22 (63)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555543
No 14
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=96.13 E-value=0.0043 Score=56.69 Aligned_cols=34 Identities=32% Similarity=0.542 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHhhhh
Q 011571 119 EEIAVIKIQTAFRGYLARRALRA-LRGLVRLKSLI 152 (483)
Q Consensus 119 ee~AAI~IQsafRGylARRalra-LkgiVrLQAlv 152 (483)
...|+|+||++.||||+|+.++- +.|++++.+|.
T Consensus 44 R~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 57789999999999999999998 89999998874
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.38 E-value=0.075 Score=61.66 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHH----HHHHHHhhhhcccchhhhH
Q 011571 120 EIAVIKIQTAFRGYLARRALRAL----RGLVRLKSLIQGHSVKRQA 161 (483)
Q Consensus 120 e~AAI~IQsafRGylARRalraL----kgiVrLQAlvRG~~VRrqa 161 (483)
..+|+.||+.||||++|+.|..+ .+++.||..+||++.++..
T Consensus 792 ~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 792 TDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 36799999999999999999884 4689999999999999874
No 16
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=92.00 E-value=0.085 Score=49.02 Aligned_cols=25 Identities=40% Similarity=0.627 Sum_probs=22.4
Q ss_pred chhHHHHHHHHHHhhhhhhHHHHHH
Q 011571 117 SQEEIAVIKIQTAFRGYLARRALRA 141 (483)
Q Consensus 117 ~ree~AAI~IQsafRGylARRalra 141 (483)
.+|+.||+.||.+||.|+.|+.+..
T Consensus 127 ~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 127 KHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 4789999999999999999988765
No 17
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=91.22 E-value=0.22 Score=56.25 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=37.4
Q ss_pred HHHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhhh
Q 011571 144 GLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMS 186 (483)
Q Consensus 144 giVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~~ 186 (483)
-++.||+.+||+++|+.+...+....|++.||..+|++..|+.
T Consensus 781 ~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~ 823 (837)
T 1kk8_A 781 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 823 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3688999999999999997766667899999999999988763
No 18
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=86.74 E-value=0.62 Score=54.07 Aligned_cols=44 Identities=7% Similarity=0.157 Sum_probs=38.0
Q ss_pred HHH-HHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhh
Q 011571 142 LRG-LVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM 185 (483)
Q Consensus 142 Lkg-iVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~ 185 (483)
+.. ++.||+.+||+++|+.+...+....|++.||+.+|++..++
T Consensus 791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k 835 (1184)
T 1i84_S 791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVX 835 (1184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444 68899999999999999876667789999999999998775
No 19
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=86.25 E-value=0.38 Score=54.03 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHH
Q 011571 119 EEIAVIKIQTAFRGYLARRALRALRG 144 (483)
Q Consensus 119 ee~AAI~IQsafRGylARRalraLkg 144 (483)
...+|+.||++||||++|+.|+.++.
T Consensus 767 l~~~~~~iQ~~~Rg~l~R~~~~~~r~ 792 (795)
T 1w7j_A 767 LRAACIRIQKTIRGWLMRKKYMRMRR 792 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999998654
No 20
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=74.35 E-value=2.1 Score=49.53 Aligned_cols=36 Identities=6% Similarity=0.033 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHhhhhccc
Q 011571 119 EEIAVIKIQTAFRGYLARRALRALR-GLVRLKSLIQGH 155 (483)
Q Consensus 119 ee~AAI~IQsafRGylARRalraLk-giVrLQAlvRG~ 155 (483)
.+.+|+.||. +|||++|+.|+.++ ..+.+|.+-|+.
T Consensus 774 ~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~ 810 (1052)
T 4anj_A 774 PDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKI 810 (1052)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777775 68899988887643 345555444443
No 21
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=47.74 E-value=18 Score=33.00 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=20.1
Q ss_pred HHHHHhhhhcccchhhhHHHhHHhhhhHHHHH
Q 011571 144 GLVRLKSLIQGHSVKRQATTTLRCMQTLARVQ 175 (483)
Q Consensus 144 giVrLQAlvRG~~VRrqa~~tlr~~qA~vriQ 175 (483)
.++++|..|||+++|++..- ++.+++++-
T Consensus 47 ~~i~iQktvR~~L~rkkhkP---Ri~g~~kv~ 75 (148)
T 3gn4_A 47 ACIKMQKTIRMWLCKRRHKP---RIDGLVKVG 75 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhh---HHHHHHHHH
Confidence 47888999999999998853 344444433
No 22
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=29.80 E-value=21 Score=23.08 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHhhhhhhHH...
Q 011571 119 EEIAVIKIQTAFRGYLARR... 137 (483)
Q Consensus 119 ee~AAI~IQsafRGylARR... 137 (483)
+--|+..||-.||-+..|+
T Consensus 5 KiYA~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 5 KIYAAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHHHHhccC...
Confidence 4568999999999887663
No 23
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=25.47 E-value=50 Score=38.30 Aligned_cols=41 Identities=10% Similarity=-0.061 Sum_probs=29.5
Q ss_pred HHHHHHHhhhhcccchhhhHHHhHHhhhhHHHHHHHHHHHHHhh
Q 011571 142 LRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM 185 (483)
Q Consensus 142 LkgiVrLQAlvRG~~VRrqa~~tlr~~qA~vriQs~vR~rr~R~ 185 (483)
+..++.+|..+||.++|+++.. -.++++.||...|.++.|.
T Consensus 774 ~~~~~~~iq~~r~~l~r~~~~k---~~~~a~~i~~~~r~~~~r~ 814 (1052)
T 4anj_A 774 PDHLAELVKRVNHWLICSRWKK---VQWCSLSVIKLKNKIKYRA 814 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 5566667667899999999843 3457777777767666554
No 24
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=25.39 E-value=39 Score=22.38 Aligned_cols=19 Identities=11% Similarity=0.161 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhhhhhHHH
Q 011571 120 EIAVIKIQTAFRGYLARRA 138 (483)
Q Consensus 120 e~AAI~IQsafRGylARRa 138 (483)
.-||.+||-.||-+..||.
T Consensus 2 vYAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 2 IYAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred hhHHHHHHHHHHHHHhhhh
Confidence 3589999999999988875
No 25
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=23.40 E-value=22 Score=23.00 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHhhhhhhHH
Q 011571 119 EEIAVIKIQTAFRGYLARR 137 (483)
Q Consensus 119 ee~AAI~IQsafRGylARR 137 (483)
+--||.+||-.||-+..|+
T Consensus 4 KiYAallI~d~~r~~k~~~ 22 (23)
T 3dve_B 4 KVYAALMIFDFYKQNKTSR 22 (26)
T ss_dssp HHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3568999999999887654
No 26
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=21.78 E-value=45 Score=22.05 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=15.6
Q ss_pred HHHHHHHHhhhhhhHHHHH
Q 011571 122 AVIKIQTAFRGYLARRALR 140 (483)
Q Consensus 122 AAI~IQsafRGylARRalr 140 (483)
|-..||-.||.|..|+.-.
T Consensus 4 at~LIqdyfRkfkkrke~~ 22 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQX 22 (26)
T ss_pred hhhhHHHHHHHHHHhHHhh
Confidence 5678999999999887643
No 27
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=20.15 E-value=61 Score=23.09 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHhhhhhhHHHH
Q 011571 119 EEIAVIKIQTAFRGYLARRAL 139 (483)
Q Consensus 119 ee~AAI~IQsafRGylARRal 139 (483)
+=-|-..||-.||-|..|+.-
T Consensus 10 KfYatfLIQdyFRkfkkrke~ 30 (37)
T 2be6_D 10 KFYATFLIQEYFRKFKKRKEQ 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999998874
Done!