BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011572
(483 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SGQ0|VOZ1_ARATH Transcription factor VOZ1 OS=Arabidopsis thaliana GN=VOZ1 PE=1 SV=1
Length = 486
Score = 485 bits (1248), Expect = e-136, Method: Compositional matrix adjust.
Identities = 268/491 (54%), Positives = 319/491 (64%), Gaps = 27/491 (5%)
Query: 5 SKSKCASASHQFLLDSAKNRLNDLQEKFANLRVARKEGRANDVAVLEEQVNQILREWNSE 64
SK+ C SASH+ D AKNR++DLQ +L+ ARKE R DV +LEEQVNQ+LREW SE
Sbjct: 6 SKTNCRSASHKLFKDKAKNRVDDLQGMLLDLQFARKESRPTDVTLLEEQVNQMLREWKSE 65
Query: 65 LSAPSPASSLL-GGSLGLFPNDIDRLLQLGDEQDDATSPLAGFAEMKPQP-DVQGHPGTM 122
L+ PSPASSL GG+LG F +DI RLLQL DE+DDATS LA KP+P D G
Sbjct: 66 LNEPSPASSLQQGGTLGSFSSDICRLLQLCDEEDDATSKLAA---PKPEPADQNLEAGKA 122
Query: 123 MAFQEDYVVNNELQGHCFQGFDKCEDSASGLHNPTVGISGLTTQLDYSHLIFRQELENLL 182
FQ Y + H D C+D + N G + L Y +QE E
Sbjct: 123 AVFQRGYNLVQGKSEHGLPLVDNCKDLSLAAGNNFDGTAPLEYHQQYD---LQQEFEPNF 179
Query: 183 LDGVNGTEECEKDIGP----NSLPIIHPPPSAFMGPKCALWDCTRPALGSELFEDYCSNF 238
G N GP N +P I PPPSAF+GPKCALWDC RPA G + F+DYCS+F
Sbjct: 180 NGGFNNCPSYGVVEGPIHISNFIPTICPPPSAFLGPKCALWDCPRPAQGFDWFQDYCSSF 239
Query: 239 HATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARAQGKRVGIPHCEGAATTKSPWNAT 298
HA LA +E PG+ PV+RPGGI LKD LLF A++A+A GK VGIP CEGAAT KSPWNA
Sbjct: 240 HAALAFNEGPPGMNPVVRPGGIGLKDGLLFAALSAKAGGKDVGIPECEGAATAKSPWNAP 299
Query: 299 ELFDLALLEGETIREWLFFDKHRKAFESGTRKQRSLPDHSGRGWHESRKLVMKEFGGQKR 358
ELFDL +LE ET+REWLFFDK R+AFESG RKQRSLPD++GRGWHESRK +M EFGG KR
Sbjct: 300 ELFDLTVLESETLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQIMVEFGGLKR 359
Query: 359 SYYMDPQPSDGLEWHLYEYEIIGFDAYALYRLEVKLASEKKSPKVKVTKDSLADLQKKMG 418
SYYMDPQP EWHLYEYEI DA ALYRLE+KL KK+ K KV+ DS+ADLQK+MG
Sbjct: 360 SYYMDPQPLHHFEWHLYEYEINKCDACALYRLELKLVDGKKTSKGKVSNDSVADLQKQMG 419
Query: 419 RLTADVPVD---------NKSSFKGKIETNGKVDSANVNSSQNEMTSATEILHHGSSSPY 469
RLTA+ P + NK KG+ + + KV + NV QN + A + +G +
Sbjct: 420 RLTAEFPPENNTTNTTNNNKRCIKGRPKVSTKVATGNV---QNTVEQAND---YGVGEEF 473
Query: 470 KYLADNSADYY 480
YL N +DYY
Sbjct: 474 NYLVGNLSDYY 484
>sp|Q9SLB9|VOZ2_ARATH Transcription factor VOZ2 OS=Arabidopsis thaliana GN=VOZ2 PE=1 SV=2
Length = 450
Score = 430 bits (1105), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/439 (52%), Positives = 297/439 (67%), Gaps = 29/439 (6%)
Query: 11 SASHQFLLDSAKNRLNDLQEKFANLRVARKEGRANDVAVLEEQVNQILREWNSELSAPSP 70
+++HQ + + +L +LQE+F +L+ ARKEGR D+A+LE Q++Q +REW +EL+APSP
Sbjct: 8 TSAHQ----NVEEKLRELQERFCHLQAARKEGRHGDLALLEAQISQNIREWQAELTAPSP 63
Query: 71 ASSLLGGSLGLFPNDIDRLLQLGDEQDDATSPLAGFAEMKPQPD---------------V 115
SSLLG + F + LL+L DE+DDATS L A KP P+
Sbjct: 64 ESSLLGEGISQFLEEFAPLLKL-DEEDDATSTLKEHAGAKPDPEGFSQSLCPPEWTSENF 122
Query: 116 QGHP--GTMMAFQEDYVVNNELQG----HCFQGFDKCEDSASGLHNPTVGIS-GLTTQLD 168
P G ED + + E G + ++GFD +SA H+ + + +T+Q D
Sbjct: 123 SQSPFNGNFSCGFEDALNSTETHGQQLHYGYEGFDPSINSAPDFHDQKLSSNLDITSQYD 182
Query: 169 YSHLIFRQELENLLLDGVNGTEECEKDIGPNSLPIIHPPPSAFMGPKCALWDCTRPALGS 228
Y RQEL+N ++ +EE + ++ + PPSAF+GPKCALWDCTRPA GS
Sbjct: 183 YIFSEVRQELDNSPSTKLDSSEEIDNFAEFSTPSSVRVPPSAFLGPKCALWDCTRPAQGS 242
Query: 229 ELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARAQGKRVGIPHCEGA 288
E + DYCSN+H TLA++EDSPG PVLRPGGI+LKD+LL +A+ A+ QGK VGIP CEGA
Sbjct: 243 EWYLDYCSNYHGTLALNEDSPGTAPVLRPGGISLKDNLLIDALRAKTQGKNVGIPVCEGA 302
Query: 289 ATTKSPWNATELFDLALLEGETIREWLFFDKHRKAFESGTRKQRSLPDHSGRGWHESRKL 348
TK PWNA ELF L L+EGETIREWLFFDK R+A++SG RKQRSLPD+SGRGWHESRK
Sbjct: 303 VNTKCPWNAAELFHLELVEGETIREWLFFDKPRRAYDSGNRKQRSLPDYSGRGWHESRKQ 362
Query: 349 VMKEFGGQKRSYYMDPQPSDGLEWHLYEYEIIGFDAYALYRLEVKLASEKKSPKVKVTKD 408
+MKE GQKRSYYMDPQP EWHL+EY+I DA ALYRLE+K+ + KKSPK K++KD
Sbjct: 363 LMKEQEGQKRSYYMDPQPPGPFEWHLFEYQINESDACALYRLELKVGNGKKSPKGKISKD 422
Query: 409 SLADLQKKMG--RLTADVP 425
LADLQKKMG ++ +D P
Sbjct: 423 PLADLQKKMGQFKVASDKP 441
>sp|Q01202|MYSP_BRUMA Paramyosin OS=Brugia malayi PE=2 SV=2
Length = 880
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 15/101 (14%)
Query: 382 FDAYALYRLEVK-LASEKKSPKV------KVTKDSLADLQKKMGRLTADVPVDNK-SSFK 433
D YAL + +V L++E + KV + K + DL++ GR+T V V+N ++ K
Sbjct: 601 LDQYALAQRKVSALSAELEECKVALDNAIRARKQAEIDLEEANGRITDLVSVNNNLTAIK 660
Query: 434 GKIETNGKVDSANVNSSQNEMTSATEILHHGSSSPYKYLAD 474
K+ET ++++Q ++ AT+ LH + LAD
Sbjct: 661 NKLET-------ELSTAQADLDEATKELHAADERANRALAD 694
>sp|A1CJ92|SRB8_ASPCL Mediator of RNA polymerase II transcription subunit 12
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=srb8 PE=3 SV=1
Length = 1591
Score = 32.7 bits (73), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 42 GRANDVAVLEEQVNQILREWNSELSAPSPASSLLGGSL----GLFPNDIDRLLQLGDEQD 97
G N VA+L + + +I E S ++APSP S + + LFP +D+LL G D
Sbjct: 892 GEFNTVALLRQDLGRI--ENKSSMAAPSPLSDHIPATFNETDSLFPEKLDQLLFSGGGMD 949
Query: 98 DAT 100
++T
Sbjct: 950 EST 952
>sp|Q9W799|CPSF2_XENLA Cleavage and polyadenylation specificity factor subunit 2
OS=Xenopus laevis GN=cpsf2 PE=1 SV=1
Length = 783
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 353 FGGQKRSYYMDPQPSDGLEWHLYEYEIIGFDAYALYRLEV------KLASEKKSPKVKVT 406
F K+SY M P P D ++W Y EII + + + L+V KL S + +
Sbjct: 454 FKQAKKSYPMFPAPEDRIKWDEYG-EIIKPEDFLVPELQVTEDEKTKLESGLTNGDEPMD 512
Query: 407 KDSLADLQKKMGRLTADVPVDNKSSFKGKIETNGKVDSANVNSSQNEMTSATEILHHGSS 466
+D L+D+ K T + + + ++ I+ G+ D ++ N+M I+ HG
Sbjct: 513 QD-LSDVPTKCVSTTESMEIKARVTY---IDYEGRSDGDSIKKIINQMKPRQLIIVHGPP 568
Query: 467 SPYKYLAD 474
+ LA+
Sbjct: 569 DATQDLAE 576
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,983,243
Number of Sequences: 539616
Number of extensions: 8408277
Number of successful extensions: 15365
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 15352
Number of HSP's gapped (non-prelim): 16
length of query: 483
length of database: 191,569,459
effective HSP length: 121
effective length of query: 362
effective length of database: 126,275,923
effective search space: 45711884126
effective search space used: 45711884126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)